Query 003689
Match_columns 802
No_of_seqs 217 out of 767
Neff 4.4
Searched_HMMs 13730
Date Tue Mar 26 18:58:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003689.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1736-1740//hhsearch_scop/003689hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2h8pc1 f.14.1.1 (C:22-78) Pot 9.6 31 0.0023 10.2 1.3 40 342-383 15-54 (57)
2 d2yvxa3 f.57.1.1 (A:276-448) M 8.1 38 0.0027 9.7 2.0 61 341-411 11-73 (173)
3 d1dxja_ d.2.1.1 (A:) Plant cla 4.6 78 0.0057 7.6 0.2 14 325-338 108-121 (242)
4 d1iray2 b.1.1.4 (Y:102-204) Ty 4.5 80 0.0058 7.5 1.5 27 609-635 56-82 (103)
5 d1dx5i1 g.3.11.1 (I:345-387) T 3.8 94 0.0069 7.0 -0.1 30 610-642 11-40 (43)
6 d3e9oa1 c.55.3.14 (A:1835-2087 3.5 1.1E+02 0.0081 6.6 0.7 12 735-746 142-153 (253)
7 d1ppaa_ a.133.1.2 (A:) Snake p 3.5 1.1E+02 0.0081 6.6 1.3 25 303-327 1-27 (121)
8 d3enba1 c.55.3.14 (A:1771-1989 3.4 1.1E+02 0.0082 6.5 0.8 12 413-425 49-60 (219)
9 d2h9fa2 d.21.1.4 (A:187-395) H 3.0 1.3E+02 0.0094 6.1 2.0 49 383-433 133-209 (209)
10 d2bnma1 a.35.1.3 (A:6-76) Hydr 3.0 1.1E+02 0.0078 6.7 -0.4 12 130-141 40-51 (71)
No 1
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.62 E-value=31 Score=10.18 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=25.1
Q ss_pred HHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 889976113023320299875662201345743378999999
Q 003689 342 PALLAAYSGQAAYLRKFPNHVDDTFYKATPHALYWPQFVVAV 383 (802)
Q Consensus 342 P~LlL~Y~GQaA~Ll~~p~~~~n~Fy~siP~~l~wP~fvlAt 383 (802)
-++++--++-..|+.++.. ++.-|.++|+.+.|-.+-+.|
T Consensus 15 ~~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 15 LVIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCC--CCCCCCCCCHHHHHHEEEEEC
T ss_conf 9999999999999983589--975536450644645035431
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=8.13 E-value=38 Score=9.66 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=36.6
Q ss_pred HHHHHHHHCCC--HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 78899761130--233202998756622013457433789999999999998677662669999998679997
Q 003689 341 FPALLAAYSGQ--AAYLRKFPNHVDDTFYKATPHALYWPQFVVAVAAAIIASQAMISGAFSIVAQSLSLSCFP 411 (802)
Q Consensus 341 ~P~LlL~Y~GQ--aA~Ll~~p~~~~n~Fy~siP~~l~wP~fvlAtlAtIIASQA~ISg~FSii~Qai~Lg~fP 411 (802)
.|=|+++-+|+ +|+++.+-|+.-+.+-. =..|.|+ ++-++--+++|+.. ++-+++++|-.-
T Consensus 11 lpWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~ 73 (173)
T d2yvxa3 11 VRWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLD 73 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HHCCCCHHHHHHHH-----HHHHHHHCCCCC
T ss_conf 999999999999999999999999999999---9999999--92587639999999-----999998603433
No 3
>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia ensiformis) [TaxId: 3823]}
Probab=4.59 E-value=78 Score=7.58 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=9.5
Q ss_pred CCCCCCCEEHHHHH
Q ss_conf 98876440001367
Q 003689 325 GHFSVRAIQISFSG 338 (802)
Q Consensus 325 GHF~~~~Iqiaw~~ 338 (802)
-++||.+|||+|-.
T Consensus 108 ~Y~GRG~iQLTg~~ 121 (242)
T d1dxja_ 108 SYYGRGPIQLTHNY 121 (242)
T ss_dssp CCCCBTTTTBCSHH
T ss_pred CCCCCCCCCCCHHH
T ss_conf 52678832252567
No 4
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.51 E-value=80 Score=7.52 Aligned_cols=27 Identities=22% Similarity=0.577 Sum_probs=21.6
Q ss_pred CCCEEEEEEECCCCCCEEEEEEEEECC
Q ss_conf 982699987338999779999996304
Q 003689 609 LEERFLFRQVEPRDHRMFRCVARYGYK 635 (802)
Q Consensus 609 ~~eR~~v~~v~~~~~~~~r~v~ryGy~ 635 (802)
.+..+.+..+...+-|.|+|++++.+.
T Consensus 56 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 56 VKDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp ETTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCCEEEECCCCCCCCCEEEEEEEECCC
T ss_conf 499999901530339579999997769
No 5
>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.81 E-value=94 Score=7.04 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=22.6
Q ss_pred CCEEEEEEECCCCCCEEEEEEEEECCCCCCCHH
Q ss_conf 826999873389997799999963045789935
Q 003689 610 EERFLFRQVEPRDHRMFRCVARYGYKDKIEEPG 642 (802)
Q Consensus 610 ~eR~~v~~v~~~~~~~~r~v~ryGy~d~~~~~~ 642 (802)
.-.+.-..+++ +-|||+-+-||+-.++.|+
T Consensus 11 ~CE~qCqP~~~---~~Y~CiCaeGFaP~p~~Ph 40 (43)
T d1dx5i1 11 NCEYQCQPLDQ---TSYLCVCAEGFAPIPHEPH 40 (43)
T ss_dssp CCSSEEEECSS---SCEEEECCTTEEEETTEEE
T ss_pred CCCEEEEECCC---CCCEEEECCCCCCCCCCCC
T ss_conf 74034151798---7526781266545899866
No 6
>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=3.47 E-value=1.1e+02 Score=6.60 Aligned_cols=12 Identities=42% Similarity=0.421 Sum_probs=4.5
Q ss_pred HHHHHHHHCCEE
Q ss_conf 999998837909
Q 003689 735 QFVQKAMERGVV 746 (802)
Q Consensus 735 ~~l~~a~~~gvv 746 (802)
..+-+|.|...+
T Consensus 142 dlil~ate~qmv 153 (253)
T d3e9oa1 142 DVVMKATEPQMV 153 (253)
T ss_dssp HHHHHCSSCEEE
T ss_pred HHHHCCCCCCEE
T ss_conf 566505887289
No 7
>d1ppaa_ a.133.1.2 (A:) Snake phospholipase A2 {Eastern cottonmouth snake (Agkistrodon piscivorus piscivorus) [TaxId: 8716]}
Probab=3.46 E-value=1.1e+02 Score=6.58 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCHH--CCCCCCC
Q ss_conf 443242345522010000--1478988
Q 003689 303 GWISLGGIVLCITGTEAM--FADLGHF 327 (802)
Q Consensus 303 ~~~~LG~VvLciTG~EAL--fADlGHF 327 (802)
..+-||..+.|+||..|+ |.|-|.+
T Consensus 1 sl~qf~~MI~~~Tg~~~~~~Y~~YGCy 27 (121)
T d1ppaa_ 1 SVLELGKMILQETGKNAITSYGSYGCN 27 (121)
T ss_dssp CHHHHHHHHHHHHCSCHHHHHTTCTTT
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHCCCC
T ss_conf 978999999876488879999752877
No 8
>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.40 E-value=1.1e+02 Score=6.53 Aligned_cols=12 Identities=50% Similarity=0.983 Sum_probs=0.0
Q ss_pred CEEEECCCCCCCC
Q ss_conf 0487359876781
Q 003689 413 VKVVHTSAKYEGQ 425 (802)
Q Consensus 413 vkIvHTS~~~~GQ 425 (802)
+||+|||. ..||
T Consensus 49 lKiihtSv-waGQ 60 (219)
T d3enba1 49 LKIIHTSV-WAGQ 60 (219)
T ss_dssp EEEECGGG-CCSC
T ss_pred EEEEEEHH-CCCH
T ss_conf 99986012-0555
No 9
>d2h9fa2 d.21.1.4 (A:187-395) Hypothetical protein PA0793 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.04 E-value=1.3e+02 Score=6.14 Aligned_cols=49 Identities=29% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC----------------------------CCCCEEECHHHH
Q ss_conf 999999986776626699999986799975048735987----------------------------678133003479
Q 003689 383 VAAAIIASQAMISGAFSIVAQSLSLSCFPRVKVVHTSAK----------------------------YEGQVYIPEINY 433 (802)
Q Consensus 383 tlAtIIASQA~ISg~FSii~Qai~Lg~fPRvkIvHTS~~----------------------------~~GQIYIP~vNw 433 (802)
|.|--+|.-|.|.| |+.++...-+-=..++|-|.|-. ..|+||+|+=-|
T Consensus 133 Tgav~la~Aa~ipG--Tv~~~~~~~~~~~~v~I~HPsG~~~v~~~~~~~~~~~~v~~a~v~RTARrLm~G~V~vP~~~~ 209 (209)
T d2h9fa2 133 TAAVAIGTAAAIPG--TLVNLAAGGGERSAVRFGHPSGTLRVGAEASQANGEWTVTKAIMSRSARILMEGWVRVPGDAF 209 (209)
T ss_dssp HHHHHHHHHHHSTT--SHHHHHTTSSCCSEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEECEEEEEEEEEEEETTCC
T ss_pred HHHHHHHHHHCCCC--CHHHHHCCCCCCCEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEECCHHEEEEEECCCCCC
T ss_conf 77898777651689--668860378888759997699369999999736996479999999834020478897765569
No 10
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=3.03 E-value=1.1e+02 Score=6.69 Aligned_cols=12 Identities=50% Similarity=0.974 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHH
Q ss_conf 999749999996
Q 003689 130 NGDGGTFALYSL 141 (802)
Q Consensus 130 ~GEGGtfALysL 141 (802)
|||||-+.|..|
T Consensus 40 ngeggeltltql 51 (71)
T d2bnma1 40 NGEGGELTLTQL 51 (71)
T ss_dssp TTTCTTCBHHHH
T ss_pred CCCCCEEEHHHH
T ss_conf 588750529998
Done!