BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003690
(802 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6QLK4|TMM8B_BOVIN Transmembrane protein 8B OS=Bos taurus GN=TMEM8B PE=2 SV=1
Length = 472
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 140/331 (42%), Gaps = 46/331 (13%)
Query: 452 FFKLYNSSEEKVDFYILYVREGTW--------GFGIRHVN--TSKSETVMSVSLERCPKR 501
F +++ I + + GTW G G R V + +E + L C
Sbjct: 130 FLLTVSAASRVARLRIPFPQTGTWFLTLRSLCGVGPRFVRCRNATAEVRLRTFLSPCVDD 189
Query: 502 CSSHGQCRNAFDASGLTLYSFCACDRDHGGFDC--SVELVSHRGHVQQSVALIASNAAAL 559
C +GQC+ + LY+ C C G+ C S + +++ + ++ L SN L
Sbjct: 190 CGPYGQCK--LLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCLSNLMFL 247
Query: 560 LPAYQALRQKAFAEWVLFTASGISSGLYHACD---VGTWCALSFNVLQFMDFWLSFMAVV 616
P A+R + E ++T + S YHACD + +C + ++VLQF DF S M+V
Sbjct: 248 PPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVW 307
Query: 617 STFIYLTTIDEALKRTIHTVVAILTAMMAITKATRSSNIILVISIGAAGLLIGLLVELST 676
T I + + +K+ ++ + A+L + MA+ +L S+ A G+ L+T
Sbjct: 308 VTVIAMARLQPVVKQVLYLLGAMLLS-MALQLDRHGLWNLLGPSLFALGI-------LAT 359
Query: 677 KFRSFSLRFGFCMNMVDRQQTIMEWLRNFMKTILRRFRWGFVLVGFAALAMAAISWK--L 734
+ S+R C R RW F L + +A +AI +
Sbjct: 360 AWTVRSVRRRHCYPPTWR-------------------RWLFCLCPGSLIAGSAILLYAFV 400
Query: 735 ETSQSYWIWHSIWHVSIYTSSFFFLCSKVSS 765
ET +Y+ HSIWH+ I S F L + +
Sbjct: 401 ETRDNYFYIHSIWHMLIAGSVGFLLPPRAKT 431
>sp|A6NDV4|TMM8B_HUMAN Transmembrane protein 8B OS=Homo sapiens GN=TMEM8B PE=1 SV=2
Length = 472
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 142/329 (43%), Gaps = 43/329 (13%)
Query: 453 FKLYNSSEEKV-DFYILYVREGTW--------GFGIRHVN--TSKSETVMSVSLERCPKR 501
F L S+ +V I + + GTW G G R V + +E M L C
Sbjct: 130 FLLSVSATTRVARLRIPFPQTGTWFLALRSLCGVGPRFVRCRNATAEVRMRTFLSPCVDD 189
Query: 502 CSSHGQCRNAFDASGLTLYSFCACDRDHGGFDC--SVELVSHRGHVQQSVALIASNAAAL 559
C +GQC+ + LY+ C C G+ C S + +++ + ++ L SN L
Sbjct: 190 CGPYGQCK--LLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCLSNLMFL 247
Query: 560 LPAYQALRQKAFAEWVLFTASGISSGLYHACD---VGTWCALSFNVLQFMDFWLSFMAVV 616
P A+R + E ++T + S YHACD + +C + ++VLQF DF S M+V
Sbjct: 248 PPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVW 307
Query: 617 STFIYLTTIDEALKRTIHTVVAILTAMMAITKATRSSNIILVISIGAAGLLIGLLVELST 676
T I + + +K+ ++ + A+L + MA+ +L S+ A G+ L+T
Sbjct: 308 VTVIAMARLQPVVKQVLYLLGAMLLS-MALQLDRHGLWNLLGPSLFALGI-------LAT 359
Query: 677 KFRSFSLRFGFCMNMVDRQQTIMEWLRNFMKTILRRFRWGFVLVGFAALAMAAISWKLET 736
+ S+R C R+ WL G ++ G A L A + ET
Sbjct: 360 AWTVRSVRRRHCYPPTWRR-----WLFYLCP--------GSLIAGSAVLLYAFV----ET 402
Query: 737 SQSYWIWHSIWHVSIYTSSFFFLCSKVSS 765
+Y+ HSIWH+ I S F L + +
Sbjct: 403 RDNYFYIHSIWHMLIAGSVGFLLPPRAKT 431
>sp|B1AWJ5|TMM8B_MOUSE Transmembrane protein 8B OS=Mus musculus GN=Tmem8b PE=2 SV=1
Length = 472
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 142/329 (43%), Gaps = 43/329 (13%)
Query: 453 FKLYNSSEEKV-DFYILYVREGTW--------GFGIRHVN--TSKSETVMSVSLERCPKR 501
F L S+ +V I + + GTW G G R V + +E + L C
Sbjct: 130 FLLSVSATSRVARLRIPFPQTGTWFLTLRSLCGVGPRFVRCRNATAEVRLRTFLSPCVDD 189
Query: 502 CSSHGQCRNAFDASGLTLYSFCACDRDHGGFDC--SVELVSHRGHVQQSVALIASNAAAL 559
C +GQC+ + LY+ C C G+ C S + +++ + ++ L SN L
Sbjct: 190 CGPYGQCK--LLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCLSNLMFL 247
Query: 560 LPAYQALRQKAFAEWVLFTASGISSGLYHACD---VGTWCALSFNVLQFMDFWLSFMAVV 616
P A+R + E ++T + S YHACD + +C + ++VLQF DF S M+V
Sbjct: 248 PPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVW 307
Query: 617 STFIYLTTIDEALKRTIHTVVAILTAMMAITKATRSSNIILVISIGAAGLLIGLLVELST 676
T I + + +K+ ++ + A+L + MA+ +L S+ A G+ L+T
Sbjct: 308 VTVIAMARLQPVIKQVLYLLGAMLLS-MALQLDRHGLWNLLGPSLFALGI-------LAT 359
Query: 677 KFRSFSLRFGFCMNMVDRQQTIMEWLRNFMKTILRRFRWGFVLVGFAALAMAAISWKLET 736
+ S+R C R+ WL G ++ G A L A + ET
Sbjct: 360 AWTVRSVRRRHCYPPTWRR-----WLFYLCP--------GSLIAGSAVLLYAFV----ET 402
Query: 737 SQSYWIWHSIWHVSIYTSSFFFLCSKVSS 765
+Y+ HSIWH+ I S F L + +
Sbjct: 403 RDNYFYIHSIWHMLIAGSVGFLLPPRAKT 431
>sp|Q9HCN3|TMM8A_HUMAN Transmembrane protein 8A OS=Homo sapiens GN=TMEM8A PE=1 SV=3
Length = 771
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/368 (22%), Positives = 144/368 (39%), Gaps = 59/368 (16%)
Query: 405 AGGSIHIQLTSDTKIKHEIYAKSGGLPSLQSWDYYYANRTNNSVGSMFFKLYNSS----E 460
+GGS+ I L ++ K E+ ++ + + + + T+ + + FF+ Y S
Sbjct: 396 SGGSLTISLRAN---KTEMRNETVVVACVNAASPFLGFNTSLNCTTAFFQGYPLSLSAWS 452
Query: 461 EKVDFYILYVREGTWGFGIRHVNTSKSETV--------MSVSLERCPKRCSSHGQC---- 508
+ + I Y W ++ + +E ++ L C C +GQC
Sbjct: 453 RRANLIIPYPETDNWYLSLQLMCPENAEDCEQAVVHVETTLYLVPCLNDCGPYGQCLLLR 512
Query: 509 RNAFDASGLTLYSFCACDRDHGGFDCSVELVSHRGHVQQSVALIA--SNAAALLPAYQAL 566
R+++ LY+ C+C G+ C+ + Q++ L+ SN L P ++
Sbjct: 513 RHSY------LYASCSCKAGWRGWSCTDNSTAQTVAQQRAATLLLTLSNLMFLAPIAVSV 566
Query: 567 RQKAFAEWVLFTASGISSGLYHACDV---GTWCALSFNVLQFMDFWLSFMAVVSTFIYLT 623
R+ E ++ + S YHACD C LS++ LQ+ DF S A+ T + +
Sbjct: 567 RRFFLVEASVYAYTMFFSTFYHACDQPGEAVLCILSYDTLQYCDFLGSGAAIWVTILCMA 626
Query: 624 TIDEALKRTIHTVVAILTAMMAITKATRSSNIILVISIGAAGLLIGLLVELSTKFRSFSL 683
+ LK + ++ L M++ R G +L L ++
Sbjct: 627 RLKTVLKYVLF-LLGTLVIAMSLQLDRR----------GMWNMLGPCLFAFVIMASMWAY 675
Query: 684 RFGFCMNMVDRQQTIMEWLRNFMKTILRRFRWGFVLVGFAALAMA--AISWKLETSQSYW 741
R G RQ W RW F L+ ++A AI + TS +Y+
Sbjct: 676 RCGH-----RRQCYPTSWQ-----------RWAFYLLPGVSMASVGIAIYTSMMTSDNYY 719
Query: 742 IWHSIWHV 749
HSIWH+
Sbjct: 720 YTHSIWHI 727
>sp|Q9ESN3|TMM8A_MOUSE Transmembrane protein 8A OS=Mus musculus GN=Tmem8a PE=2 SV=1
Length = 769
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 113/285 (39%), Gaps = 46/285 (16%)
Query: 486 KSETVMSVSLERCPKRCSSHGQC----RNAFDASGLTLYSFCACDRDHGGFDCSVELVSH 541
+ ET++ L C C +GQC R + +Y+ C+C G+ C+ +
Sbjct: 486 RVETILY--LVPCLNDCGPYGQCLLLRRYGY------VYAGCSCKAGWRGWSCTDNSTAQ 537
Query: 542 RGHVQQSVALIA--SNAAALLPAYQALRQKAFAEWVLFTASGISSGLYHACDV---GTWC 596
Q++ AL+ SN L P +L + E ++ + S YHACD C
Sbjct: 538 TVAQQRAAALLLTLSNLMFLAPIAISLHRSFLVEASVYFYTMFFSTFYHACDQPGEAVLC 597
Query: 597 ALSFNVLQFMDFWLSFMAVVSTFIYLTTIDEALKRTIHTVVAILTAMMAITKATRSSNII 656
LS++ LQ+ DF S + T + + + LK+ + + ++ AM N++
Sbjct: 598 ILSYDTLQYCDFLGSGASTWVTILCMARLKTILKQVLLVLGTLVIAMSLQMDRRGIWNLM 657
Query: 657 LVISIGAAGLLIGLLVELSTKFRSFSLRFGFCMNMVDRQQTIMEWLRNFMKTILRRFRWG 716
G + V +++ + G C W RW
Sbjct: 658 --------GPCVFAFVIMASMWIYRCGHRGQCYP--------TSWQ-----------RWV 690
Query: 717 FVLVGFAALAMAAISW--KLETSQSYWIWHSIWHVSIYTSSFFFL 759
F L+ ++A I+ + TS +Y+ HSIWH+ + S+ F L
Sbjct: 691 FYLLPGISMASVGIAMYTSMMTSDNYYYTHSIWHILLAGSAAFLL 735
>sp|Q00546|TENR_CHICK Tenascin-R OS=Gallus gallus GN=TNR PE=1 SV=1
Length = 1353
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 10/42 (23%)
Query: 494 SLERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCS 535
S RCP+ CSS G C L C CD D+GG DCS
Sbjct: 199 SEPRCPRGCSSRGVC----------LEGQCVCDNDYGGEDCS 230
Score = 33.5 bits (75), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 44/130 (33%), Gaps = 35/130 (26%)
Query: 494 SLERCPKRCSSHG---------------------QCRNAFDASGLTLYSFCACDRDHGGF 532
S RCP+ CS G +C NA G+ C C+ +GG
Sbjct: 261 SQPRCPRDCSGRGHCDNGTCVCAEGYAGEDCGWLRCPNACSGRGVCQDGLCICEDGYGGQ 320
Query: 533 DCSV----ELVSHRGHVQQSVALIASNAAALL----------PAYQALRQKAFAEWVLFT 578
DCS E + G S+ L + A P L+Q+ +W T
Sbjct: 321 DCSAVAPPENLRVTGISDGSIELAWDSLGAATEYVVSYQPAGPGGSQLQQRVPGDWSTIT 380
Query: 579 ASGISSGLYH 588
+ + G+ +
Sbjct: 381 ITELEPGVAY 390
>sp|Q8BYI9|TENR_MOUSE Tenascin-R OS=Mus musculus GN=Tnr PE=1 SV=2
Length = 1358
Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 14/59 (23%)
Query: 497 RCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCS----VELVSHRGHVQQSVAL 551
RCP CS GQC N C C + G DCS + S RGH Q+ + +
Sbjct: 265 RCPGDCSGKGQCANG----------TCLCQEGYAGEDCSQRRCLNACSGRGHCQEGLCI 313
>sp|Q05546|TENR_RAT Tenascin-R OS=Rattus norvegicus GN=Tnr PE=1 SV=1
Length = 1356
Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 14/59 (23%)
Query: 497 RCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCS----VELVSHRGHVQQSVAL 551
RCP CS GQC N C C + G DCS + S RGH Q+ + +
Sbjct: 265 RCPGDCSGKGQCANG----------TCLCQEGYAGEDCSQRRCLNACSGRGHCQEGLCI 313
>sp|Q3ZJ93|RPOB_PSEAK DNA-directed RNA polymerase subunit beta OS=Pseudendoclonium akinetum
GN=rpoB PE=3 SV=1
Length = 2178
Score = 36.2 bits (82), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 398 LDIPRGAAGGSIHIQLTSDTKIK---HEIYAKSGGLPSLQ------SWDYYYANRTNNSV 448
L +PRG G IH+++ TK K I+AKS P Q S +Y+Y T
Sbjct: 1681 LRVPRGVTGRVIHVEIVETTKKKGNDSSIFAKSLKFPKKQKLKRVTSPEYWYPVNTKKDQ 1740
Query: 449 GSMFFKLYNSSEE 461
F N SE+
Sbjct: 1741 KVQSFSFKNKSEK 1753
>sp|P78509|RELN_HUMAN Reelin OS=Homo sapiens GN=RELN PE=1 SV=3
Length = 3460
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 9/41 (21%)
Query: 496 ERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSV 536
E CPK CS HG C T + C CD G DCSV
Sbjct: 3229 EACPKLCSGHGYC---------TTGAICICDESFQGDDCSV 3260
>sp|Q60841|RELN_MOUSE Reelin OS=Mus musculus GN=Reln PE=1 SV=3
Length = 3461
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 9/41 (21%)
Query: 496 ERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSV 536
E CPK CS HG C T + C CD G DCSV
Sbjct: 3230 EACPKLCSGHGYC---------TTGAVCICDESFQGDDCSV 3261
>sp|Q8I7T3|SADA_DICDI Substrate-adhesion molecule OS=Dictyostelium discoideum GN=sadA
PE=2 SV=1
Length = 952
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 10/41 (24%)
Query: 498 CPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVEL 538
CP CS HG+C Y C CD ++ G C EL
Sbjct: 376 CPSDCSGHGECN----------YGTCVCDHNYQGQGCEEEL 406
>sp|P58751|RELN_RAT Reelin OS=Rattus norvegicus GN=Reln PE=2 SV=1
Length = 3462
Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 9/41 (21%)
Query: 496 ERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSV 536
E CP+ CS HG C T + C CD G DCSV
Sbjct: 3231 EACPRLCSGHGYC---------TTGAVCICDESFQGDDCSV 3262
>sp|Q7Z7M0|MEGF8_HUMAN Multiple epidermal growth factor-like domains protein 8 OS=Homo
sapiens GN=MEGF8 PE=1 SV=2
Length = 2845
Score = 34.3 bits (77), Expect = 4.2, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 492 SVSLERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVELVS 540
S CP C SHGQC+ CAC+ GG DC ++ S
Sbjct: 136 SFRFSLCPGGCQSHGQCQPP---------GVCACEPGWGGPDCGLQECS 175
>sp|Q9DER5|TEN2_CHICK Teneurin-2 OS=Gallus gallus GN=TENM2 PE=1 SV=1
Length = 2802
Score = 33.9 bits (76), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 497 RCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVELVS 540
+CP +CS HG + L+ C+CD + G DCSVE+ S
Sbjct: 733 QCPDQCSGHG--------TYLSDTGLCSCDPNWMGPDCSVEVCS 768
>sp|Q38826|IAA8_ARATH Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=1
SV=1
Length = 321
Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 89/226 (39%), Gaps = 28/226 (12%)
Query: 309 LGETRNAGIQVCYSLEWQVLECPMGKAGLNCKWERYILQTVIRKETLFESYYIPVSEKVP 368
L E G+ C S++ + +GK+ LN K L + E+ + +S + P
Sbjct: 19 LKERNYLGLSDCSSVDSSTIPNVVGKSNLNFKATELRLGLPESQSPERETDFGLLSPRTP 78
Query: 369 SDSAAFPLEPLLSNSSYDEGQDN-----------TWTYFLLDIPRGAAGGSIHIQLTSDT 417
+ FPL P N S G N TW F GG I++ L+
Sbjct: 79 DEKLLFPLLPSKDNGSATTGHKNVVSGNKRGFADTWDEFSGVKGSVRPGGGINMMLSPKV 138
Query: 418 K-----IKHEIYAKSGGL---PSLQS----WDYYYANRTNNSVGSMFFKLYNSSEEKVDF 465
K I+ E GGL P+ ++ W + R N++ S K + + K
Sbjct: 139 KDVSKSIQEERSHAKGGLNNAPAAKAQVVGWPPIRSYR-KNTMASSTSKNTDEVDGKPGL 197
Query: 466 YILYVREGTWGFG-IRHVN--TSKSETVMSVSLERCPKRCSSHGQC 508
+L+V+ G +R V+ T S +S +LE+ C + GQC
Sbjct: 198 GVLFVKVSMDGAPYLRKVDLRTYTSYQQLSSALEKM-FSCFTLGQC 242
>sp|P24821|TENA_HUMAN Tenascin OS=Homo sapiens GN=TNC PE=1 SV=3
Length = 2201
Score = 33.1 bits (74), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 10/39 (25%)
Query: 497 RCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCS 535
+CP CS HG+C N C CD + G DCS
Sbjct: 407 KCPNGCSGHGRCVNG----------QCVCDEGYTGEDCS 435
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 285,053,547
Number of Sequences: 539616
Number of extensions: 11656999
Number of successful extensions: 23614
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 23437
Number of HSP's gapped (non-prelim): 186
length of query: 802
length of database: 191,569,459
effective HSP length: 126
effective length of query: 676
effective length of database: 123,577,843
effective search space: 83538621868
effective search space used: 83538621868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)