Query 003690
Match_columns 802
No_of_seqs 132 out of 154
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 04:11:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12036 DUF3522: Protein of u 100.0 4.8E-47 1E-51 378.0 16.5 179 542-749 2-186 (186)
2 PF05875 Ceramidase: Ceramidas 98.0 6.7E-05 1.5E-09 78.8 13.6 52 551-610 29-88 (262)
3 PF12955 DUF3844: Domain of un 96.4 0.0025 5.4E-08 59.8 3.2 66 494-565 4-85 (103)
4 TIGR01065 hlyIII channel prote 96.4 0.042 9.1E-07 56.4 12.3 51 570-623 35-89 (204)
5 PF07974 EGF_2: EGF-like domai 96.1 0.0044 9.6E-08 46.7 2.7 26 501-534 7-32 (32)
6 PF03006 HlyIII: Haemolysin-II 95.9 0.11 2.3E-06 52.5 12.1 44 575-621 49-94 (222)
7 PRK15087 hemolysin; Provisiona 95.5 0.26 5.7E-06 51.4 13.6 46 574-623 54-103 (219)
8 PF04080 Per1: Per1-like ; In 93.7 1.2 2.5E-05 48.4 13.5 44 570-621 89-132 (267)
9 KOG2329 Alkaline ceramidase [L 93.0 0.36 7.8E-06 52.4 8.2 43 550-592 36-86 (276)
10 COG1272 Predicted membrane pro 92.4 1.1 2.4E-05 47.6 10.7 39 718-757 176-214 (226)
11 PF13965 SID-1_RNA_chan: dsRNA 91.9 3 6.4E-05 49.7 14.6 21 739-759 529-549 (570)
12 KOG1225 Teneurin-1 and related 89.6 0.21 4.5E-06 58.5 2.5 32 496-537 312-343 (525)
13 cd00053 EGF Epidermal growth f 89.5 0.37 8E-06 34.2 2.8 30 500-535 6-36 (36)
14 PF00008 EGF: EGF-like domain 88.2 0.37 8E-06 36.0 2.1 29 499-532 3-31 (32)
15 KOG2970 Predicted membrane pro 88.1 3.6 7.7E-05 45.5 10.3 142 570-751 141-295 (319)
16 PHA02887 EGF-like protein; Pro 87.0 0.39 8.5E-06 46.4 2.1 44 488-536 76-123 (126)
17 PF04863 EGF_alliinase: Alliin 86.9 0.25 5.4E-06 42.0 0.6 35 500-537 17-52 (56)
18 smart00179 EGF_CA Calcium-bind 86.4 0.84 1.8E-05 33.6 3.2 34 496-535 3-39 (39)
19 PF12036 DUF3522: Protein of u 86.2 3.1 6.8E-05 42.6 8.3 34 598-632 59-92 (186)
20 cd00054 EGF_CA Calcium-binding 86.1 0.7 1.5E-05 33.4 2.6 34 496-535 3-38 (38)
21 KOG4289 Cadherin EGF LAG seven 85.5 0.53 1.2E-05 60.0 2.7 36 496-537 1240-1276(2531)
22 PF12661 hEGF: Human growth fa 84.9 0.4 8.7E-06 29.8 0.7 13 522-534 1-13 (13)
23 KOG1225 Teneurin-1 and related 80.3 1.2 2.7E-05 52.3 2.9 59 468-536 218-280 (525)
24 smart00181 EGF Epidermal growt 78.2 2.1 4.6E-05 31.2 2.6 28 500-534 6-34 (35)
25 PHA03099 epidermal growth fact 78.0 2.2 4.7E-05 42.1 3.3 37 495-536 42-82 (139)
26 PF04151 PPC: Bacterial pre-pe 77.5 15 0.00033 31.2 8.0 66 395-480 4-69 (70)
27 KOG1226 Integrin beta subunit 76.6 1.7 3.6E-05 52.9 2.6 34 493-536 544-581 (783)
28 KOG3607 Meltrins, fertilins an 76.1 1.7 3.7E-05 53.0 2.5 35 494-537 624-658 (716)
29 KOG4260 Uncharacterized conser 70.6 2.6 5.5E-05 46.2 2.0 40 496-538 142-185 (350)
30 smart00051 DSL delta serrate l 60.1 7 0.00015 33.8 2.3 27 499-534 37-63 (63)
31 cd00055 EGF_Lam Laminin-type e 56.5 9.4 0.0002 31.0 2.4 28 501-536 3-34 (50)
32 COG5237 PER1 Predicted membran 56.4 23 0.0005 38.8 5.8 51 569-627 135-190 (319)
33 PF07645 EGF_CA: Calcium-bindi 55.8 9.2 0.0002 29.9 2.1 25 500-530 10-34 (42)
34 PF00053 Laminin_EGF: Laminin 53.4 7.7 0.00017 31.1 1.4 28 501-536 2-33 (49)
35 PF00954 S_locus_glycop: S-loc 51.2 15 0.00033 33.9 3.2 35 489-530 71-107 (110)
36 PF12947 EGF_3: EGF domain; I 48.1 9.7 0.00021 29.6 1.1 28 500-533 6-33 (36)
37 KOG3879 Predicted membrane pro 47.5 2.8E+02 0.006 30.4 11.9 22 777-798 213-234 (267)
38 KOG1219 Uncharacterized conser 38.2 23 0.0005 48.5 2.9 42 490-537 3898-3940(4289)
39 PF12662 cEGF: Complement Clr- 33.4 27 0.00059 25.2 1.4 15 522-536 3-21 (24)
40 KOG1219 Uncharacterized conser 31.4 36 0.00077 46.9 3.0 38 495-538 3942-3980(4289)
41 PF04151 PPC: Bacterial pre-pe 20.3 4.3E+02 0.0092 22.4 6.7 64 222-300 3-68 (70)
42 smart00180 EGF_Lam Laminin-typ 20.1 93 0.002 25.0 2.4 15 522-536 19-33 (46)
No 1
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=100.00 E-value=4.8e-47 Score=377.95 Aligned_cols=179 Identities=31% Similarity=0.426 Sum_probs=163.8
Q ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhccccc----eeeeccchhHhHhHhHHHHHHHHH
Q 003690 542 RGHVQQSVALIASNAAALLPAYQALRQKAFAEWVLFTASGISSGLYHACDVG----TWCALSFNVLQFMDFWLSFMAVVS 617 (802)
Q Consensus 542 ~~~~~q~llLtLSNLaflP~I~~A~kRr~~~Ea~Vy~fTmffS~fYHACD~g----~~Cim~ydvLQf~DF~gSi~Siwv 617 (802)
.+...|+++||+||++|+|+|++|+|||+++|++||+|||++|+||||||++ .+|+++||+||++||+++++++|+
T Consensus 2 ~~~~~~~l~l~lSnl~~lP~i~~a~rr~~~~Ea~v~~~tm~~S~~YHacd~~~~~~~lc~~~~~~L~~~~~~~s~~~~~v 81 (186)
T PF12036_consen 2 FEQLLQFLLLTLSNLAFLPTIYVAVRRRYHFEAFVYTFTMFFSTFYHACDSGPGEIFLCIMDWHRLQNIDFIGSFLSIWV 81 (186)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccCCCCceEEeechHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999964 499999999999999999999999
Q ss_pred HHHhhcCchhHHHHhhhhhhhHHHHHHHHhhccCC--ccchhhHHHHHHHHHHHHHhhhccccccceeeccccccccchh
Q 003690 618 TFIYLTTIDEALKRTIHTVVAILTAMMAITKATRS--SNIILVISIGAAGLLIGLLVELSTKFRSFSLRFGFCMNMVDRQ 695 (802)
Q Consensus 618 T~i~MA~~~~~lk~~~~~~~~Il~al~~~~q~~R~--wniiiPi~i~~l~i~i~Wl~~~~t~~R~~~~s~~~~~~yP~~~ 695 (802)
|+++|+++++++|+.+++++++++++. +|.||+ ||+++||++++++++++|++|++ +|+.+ ||+++
T Consensus 82 tl~~~a~~~~~~~~~l~~~~~~~~ai~--~~~~~~~~~~~~~Pi~~~~~i~~~~w~~r~~--~~~~~--------~~~~~ 149 (186)
T PF12036_consen 82 TLCAMARLDEPLKSVLHYFGALVIAIF--QQKDRWSLWNTIGPILIGLLILLVSWLYRCR--RRRRC--------YPPSW 149 (186)
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHH--HhhCcccchhhHHHHHHHHHHHHHHHheecc--cCCcc--------CChHH
Confidence 999999999999999999999998877 566655 59999999999999999999865 34434 77766
Q ss_pred HHHHHHHHHhHhhhhhcccchhhhHHHHHHHHHHhhhhcccCcceeEehhHHHH
Q 003690 696 QTIMEWLRNFMKTILRRFRWGFVLVGFAALAMAAISWKLETSQSYWIWHSIWHV 749 (802)
Q Consensus 696 ~~~~~~~~~~~k~l~rr~Rw~f~l~G~i~la~~aI~~flET~dnY~~~HSiWHi 749 (802)
+ ||++.+.||+++++.|+.+|+||+|||||+||+||+
T Consensus 150 ~-----------------~~~~~l~~g~~~~~~Gl~~f~et~dnY~~~HSlWHi 186 (186)
T PF12036_consen 150 R-----------------RWLFYLLPGIIFFILGLDLFLETNDNYRIVHSLWHI 186 (186)
T ss_pred H-----------------HHHHHHHHHHHHHHHHHhHhhcCCCcEEEEeeeeeC
Confidence 5 899999999999999999999999999999999996
No 2
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=98.03 E-value=6.7e-05 Score=78.77 Aligned_cols=52 Identities=29% Similarity=0.275 Sum_probs=35.5
Q ss_pred HHHhhhhhHHHHHHHHH---H-----hhHHHHHHHHHHHHHhhhhhccccceeeeccchhHhHhHhHH
Q 003690 551 LIASNAAALLPAYQALR---Q-----KAFAEWVLFTASGISSGLYHACDVGTWCALSFNVLQFMDFWL 610 (802)
Q Consensus 551 LtLSNLaflP~I~~A~k---R-----r~~~Ea~Vy~fTmffS~fYHACD~g~~Cim~ydvLQf~DF~g 610 (802)
=|+||++|+......++ | ++..-.+...+-++.|+.||+- +++. .|.+|=+-
T Consensus 29 NtlSNl~fi~~al~gl~~~~~~~~~~~~~l~~~~l~~VGiGS~~FHaT-------l~~~-~ql~DelP 88 (262)
T PF05875_consen 29 NTLSNLAFIVAALYGLYLARRRGLERRFALLYLGLALVGIGSFLFHAT-------LSYW-TQLLDELP 88 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHhHHHHHhC-------hhhh-HHHhhhhh
Confidence 36999998877654333 2 3444555566678999999995 5554 57788654
No 3
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=96.41 E-value=0.0025 Score=59.77 Aligned_cols=66 Identities=26% Similarity=0.432 Sum_probs=41.9
Q ss_pred Eecccc---cCCCCCcceeeecccCCceEeeeeeeCC-------------CCCCcCCCccccchhHHHHHHHHHHHhhhh
Q 003690 494 SLERCP---KRCSSHGQCRNAFDASGLTLYSFCACDR-------------DHGGFDCSVELVSHRGHVQQSVALIASNAA 557 (802)
Q Consensus 494 sl~~C~---~~Cg~~G~C~~l~~~sG~~~ys~C~C~~-------------G~~GwdCtd~~v~~~~~~~q~llLtLSNLa 557 (802)
+.+.|. |+|++||+|......+++ --=.|.|.+ .|+|.+|...-++ .+..|+..+-++
T Consensus 4 S~~aC~~~Tn~CsgHG~C~~~~~~~~~-~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKkDvS-----~~F~L~~~~ti~ 77 (103)
T PF12955_consen 4 SNDACENATNNCSGHGSCVKKYGSGGG-DCFACKCKPTVVKTGSGKGKTTHWGGPACQKKDVS-----VPFWLFAGFTIA 77 (103)
T ss_pred CHHHHHHhccCCCCCceEeeccCCCcc-ceEEEEeeccccccccccCceeeeccccccccccc-----chhhHHHHHHHH
Confidence 446675 799999999977543321 222799999 7999999864323 334455555555
Q ss_pred hHHHHHHH
Q 003690 558 ALLPAYQA 565 (802)
Q Consensus 558 flP~I~~A 565 (802)
++..+..+
T Consensus 78 lv~~~~~~ 85 (103)
T PF12955_consen 78 LVVLVAGA 85 (103)
T ss_pred HHHHHHHH
Confidence 44444333
No 4
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=96.40 E-value=0.042 Score=56.36 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHH----HhhhhhccccceeeeccchhHhHhHhHHHHHHHHHHHHhhc
Q 003690 570 AFAEWVLFTASGI----SSGLYHACDVGTWCALSFNVLQFMDFWLSFMAVVSTFIYLT 623 (802)
Q Consensus 570 ~~~Ea~Vy~fTmf----fS~fYHACD~g~~Cim~ydvLQf~DF~gSi~SiwvT~i~MA 623 (802)
......+|.+++. .|++||.=... .-..+.|+++|-.+=.+.|+.|++-.+
T Consensus 35 ~~~~~~vy~~~~~~~~~~St~yH~~~~s---~~~~~~~~rlD~~gI~~lIaGsytP~~ 89 (204)
T TIGR01065 35 AVLGFSIYGISLILLFLVSTLYHSIPKG---SKAKNWLRKIDHSMIYVLIAGTYTPFL 89 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcCc---hhHHHHHHHccHHHHHHHHHHhhHHHH
Confidence 3455666766654 59999976521 134568999999998888888765543
No 5
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=96.15 E-value=0.0044 Score=46.69 Aligned_cols=26 Identities=46% Similarity=1.049 Sum_probs=22.6
Q ss_pred CCCCCcceeeecccCCceEeeeeeeCCCCCCcCC
Q 003690 501 RCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDC 534 (802)
Q Consensus 501 ~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~GwdC 534 (802)
.|++||.|... .| .|.|++||.|.+|
T Consensus 7 ~C~~~G~C~~~---~g-----~C~C~~g~~G~~C 32 (32)
T PF07974_consen 7 ICSGHGTCVSP---CG-----RCVCDSGYTGPDC 32 (32)
T ss_pred ccCCCCEEeCC---CC-----EEECCCCCcCCCC
Confidence 59999999954 23 8999999999988
No 6
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=95.87 E-value=0.11 Score=52.52 Aligned_cols=44 Identities=16% Similarity=0.316 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhhhc--cccceeeeccchhHhHhHhHHHHHHHHHHHHh
Q 003690 575 VLFTASGISSGLYHA--CDVGTWCALSFNVLQFMDFWLSFMAVVSTFIY 621 (802)
Q Consensus 575 ~Vy~fTmffS~fYHA--CD~g~~Cim~ydvLQf~DF~gSi~SiwvT~i~ 621 (802)
+.....+++|++||. |-+.. -.++.|+++|-.|-.+.+..+.+.
T Consensus 49 ~~~~~~~~~St~yH~f~~~s~~---~~~~~~~~lD~~gI~l~i~gs~~p 94 (222)
T PF03006_consen 49 LSAILCFLCSTLYHLFSCHSEG---KVYHIFLRLDYAGIFLLIAGSYTP 94 (222)
T ss_pred HHHHHHHHhHHHhhCCCcCCcH---HHHHHHHhcchhhhhHhHhhhhhh
Confidence 334455788999999 43321 157899999999976666665443
No 7
>PRK15087 hemolysin; Provisional
Probab=95.51 E-value=0.26 Score=51.43 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=32.7
Q ss_pred HHHHHHH----HHHhhhhhccccceeeeccchhHhHhHhHHHHHHHHHHHHhhc
Q 003690 574 WVLFTAS----GISSGLYHACDVGTWCALSFNVLQFMDFWLSFMAVVSTFIYLT 623 (802)
Q Consensus 574 a~Vy~fT----mffS~fYHACD~g~~Cim~ydvLQf~DF~gSi~SiwvT~i~MA 623 (802)
..+|..+ +.+|++||.-... -..+.|+++|=.+=.+.|..|+.-++
T Consensus 54 ~~vy~~s~~~l~~~StlYH~~~~~----~~~~~~~rlDh~~I~llIaGsytP~~ 103 (219)
T PRK15087 54 YSLYGGSMILLFLASTLYHAIPHQ----RAKRWLKKFDHCAIYLLIAGTYTPFL 103 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCch----HHHHHHHHccHHHHHHHHHHhhHHHH
Confidence 3455554 4579999987631 23569999999998888888775543
No 8
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=93.72 E-value=1.2 Score=48.44 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHhhhhhccccceeeeccchhHhHhHhHHHHHHHHHHHHh
Q 003690 570 AFAEWVLFTASGISSGLYHACDVGTWCALSFNVLQFMDFWLSFMAVVSTFIY 621 (802)
Q Consensus 570 ~~~Ea~Vy~fTmffS~fYHACD~g~~Cim~ydvLQf~DF~gSi~SiwvT~i~ 621 (802)
+..-+++...+=++|+.+|+.|.. .=+.+|-+++.+.|...+.+
T Consensus 89 ~~~~~~v~~naW~wStvFH~RD~~--------~TE~lDYf~A~a~vl~~l~~ 132 (267)
T PF04080_consen 89 YIIYAIVSMNAWIWSTVFHTRDTP--------LTEKLDYFSAGATVLFGLYA 132 (267)
T ss_pred eehHHHHHHHHHHHHHHHHHhccc--------HhhHhHHhhhHHHHHHHHHH
Confidence 567889999999999999999974 11358999988777776654
No 9
>KOG2329 consensus Alkaline ceramidase [Lipid transport and metabolism]
Probab=92.99 E-value=0.36 Score=52.40 Aligned_cols=43 Identities=40% Similarity=0.421 Sum_probs=32.0
Q ss_pred HHHHhhhhhHHHH----HHHHHH----hhHHHHHHHHHHHHHhhhhhcccc
Q 003690 550 ALIASNAAALLPA----YQALRQ----KAFAEWVLFTASGISSGLYHACDV 592 (802)
Q Consensus 550 lLtLSNLaflP~I----~~A~kR----r~~~Ea~Vy~fTmffS~fYHACD~ 592 (802)
.=|.||+.|+..+ +-++|+ |++.-.+.+++-+++|..|||-=+
T Consensus 36 ~NT~sN~~fil~~~~~l~~~y~~~~e~~~~l~~v~~~ivgl~S~~fH~TL~ 86 (276)
T KOG2329|consen 36 ANTESNSPFILLAFIGLHCAYRQKLEKRAYLICVLFTIVGLGSMYFHMTLV 86 (276)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3477888877443 334443 578899999999999999999753
No 10
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=92.36 E-value=1.1 Score=47.58 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHhhhhcccCcceeEehhHHHHHHHhheeE
Q 003690 718 VLVGFAALAMAAISWKLETSQSYWIWHSIWHVSIYTSSFF 757 (802)
Q Consensus 718 ~l~G~i~la~~aI~~flET~dnY~~~HSiWHi~Ia~S~~F 757 (802)
+..||++..++++++-.+- |...+.|-+||+++-+++++
T Consensus 176 l~~GGv~YsvG~ifY~~~~-~~~~~~H~iwH~fVv~ga~~ 214 (226)
T COG1272 176 LALGGVLYSVGAIFYVLRI-DRIPYSHAIWHLFVVGGAAC 214 (226)
T ss_pred HHHHhHHheeeeEEEEEee-ccCCchHHHHHHHHHHHHHH
Confidence 5667776777666653332 78899999999998776654
No 11
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=91.88 E-value=3 Score=49.71 Aligned_cols=21 Identities=33% Similarity=0.885 Sum_probs=18.1
Q ss_pred ceeEehhHHHHHHHhheeEEe
Q 003690 739 SYWIWHSIWHVSIYTSSFFFL 759 (802)
Q Consensus 739 nY~~~HSiWHi~Ia~S~~FLL 759 (802)
+++=+|-+||++-|++.||.+
T Consensus 529 ~f~D~HDiwH~~SA~alffsf 549 (570)
T PF13965_consen 529 GFFDWHDIWHFLSAIALFFSF 549 (570)
T ss_pred CccccHHHHHHHHHHHHHHHH
Confidence 678899999999999988843
No 12
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=89.59 E-value=0.21 Score=58.49 Aligned_cols=32 Identities=44% Similarity=0.989 Sum_probs=27.9
Q ss_pred cccccCCCCCcceeeecccCCceEeeeeeeCCCCCCcCCCcc
Q 003690 496 ERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVE 537 (802)
Q Consensus 496 ~~C~~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~GwdCtd~ 537 (802)
..||.||.+||+|. .| .|.|++||.|.+|+..
T Consensus 312 ~~cpadC~g~G~Ci-----~G-----~C~C~~Gy~G~~C~~~ 343 (525)
T KOG1225|consen 312 RRCPADCSGHGKCI-----DG-----ECLCDEGYTGELCIQR 343 (525)
T ss_pred ccCCccCCCCCccc-----CC-----ceEeCCCCcCCccccc
Confidence 34999999999999 45 8999999999999873
No 13
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=89.45 E-value=0.37 Score=34.22 Aligned_cols=30 Identities=33% Similarity=0.687 Sum_probs=23.8
Q ss_pred cCCCCCcceeeecccCCceEeeeeeeCCCCCCc-CCC
Q 003690 500 KRCSSHGQCRNAFDASGLTLYSFCACDRDHGGF-DCS 535 (802)
Q Consensus 500 ~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~Gw-dCt 535 (802)
..|.++|+|.... |.+ .|.|..||.|+ .|.
T Consensus 6 ~~C~~~~~C~~~~---~~~---~C~C~~g~~g~~~C~ 36 (36)
T cd00053 6 NPCSNGGTCVNTP---GSY---RCVCPPGYTGDRSCE 36 (36)
T ss_pred CCCCCCCEEecCC---CCe---EeECCCCCcccCCcC
Confidence 6788899999653 223 79999999999 773
No 14
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=88.18 E-value=0.37 Score=35.98 Aligned_cols=29 Identities=24% Similarity=0.511 Sum_probs=23.3
Q ss_pred ccCCCCCcceeeecccCCceEeeeeeeCCCCCCc
Q 003690 499 PKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGF 532 (802)
Q Consensus 499 ~~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~Gw 532 (802)
++.|.++|.|.... .+.| .|.|.+||.|.
T Consensus 3 ~~~C~n~g~C~~~~--~~~y---~C~C~~G~~G~ 31 (32)
T PF00008_consen 3 SNPCQNGGTCIDLP--GGGY---TCECPPGYTGK 31 (32)
T ss_dssp TTSSTTTEEEEEES--TSEE---EEEEBTTEEST
T ss_pred CCcCCCCeEEEeCC--CCCE---EeECCCCCccC
Confidence 36899999999886 2334 89999999984
No 15
>KOG2970 consensus Predicted membrane protein [Function unknown]
Probab=88.07 E-value=3.6 Score=45.52 Aligned_cols=142 Identities=23% Similarity=0.273 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHhhhhhccccceeeeccchhHhHhHhHHHHHHH----HHHHHhhcCchhH-HHHhhhhhhhHHHHHH
Q 003690 570 AFAEWVLFTASGISSGLYHACDVGTWCALSFNVLQFMDFWLSFMAV----VSTFIYLTTIDEA-LKRTIHTVVAILTAMM 644 (802)
Q Consensus 570 ~~~Ea~Vy~fTmffS~fYHACD~g~~Cim~ydvLQf~DF~gSi~Si----wvT~i~MA~~~~~-lk~~~~~~~~Il~al~ 644 (802)
.+.-|.+...+-+.|+.+|.=|.. .=+.||-.++.+-+ -+.++-|-+++.. ..+- |+.++.+|..
T Consensus 141 ~~I~a~i~mnawiwSsvFH~rD~~--------lTEklDYf~A~~~vlf~ly~a~ir~~~i~~~~~~~~--~ita~fla~y 210 (319)
T KOG2970|consen 141 WLIYAYIGMNAWIWSSVFHIRDVP--------LTEKLDYFSAYLTVLFGLYVALIRMLSIQSLPALRG--MITAIFLAFY 210 (319)
T ss_pred hhhHHHHHHHHHHHHHhhhhcCCc--------hHhhhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhH--HHHHHHHHHH
Confidence 467788888899999999999873 12346766654433 3344444444332 2221 2233333333
Q ss_pred H--Hhh-----ccCCccchhhHHHHHHHHHHHHHhhhccccccceeeccccccccchhHHHHHHHHHhHhhhhhcccchh
Q 003690 645 A--ITK-----ATRSSNIILVISIGAAGLLIGLLVELSTKFRSFSLRFGFCMNMVDRQQTIMEWLRNFMKTILRRFRWGF 717 (802)
Q Consensus 645 ~--~~q-----~~R~wniiiPi~i~~l~i~i~Wl~~~~t~~R~~~~s~~~~~~yP~~~~~~~~~~~~~~k~l~rr~Rw~f 717 (802)
+ +.+ -|=.+|+..=+++|.+- ++.|++-. -|+|+ .|..|+ +|.+
T Consensus 211 a~Hi~yls~~~fdYgyNm~~~v~~g~iq-~vlw~~~~-~~~~~----------~~s~~~-----------------i~~~ 261 (319)
T KOG2970|consen 211 ANHILYLSFYNFDYGYNMIVCVAIGVIQ-LVLWLVWS-FKKRN----------LPSFWR-----------------IWPI 261 (319)
T ss_pred HHHHHHHhheecccccceeeehhhHHHH-HHHHHHHH-HHhhc----------Ccchhh-----------------hhHH
Confidence 2 111 23334766444555433 33444321 12343 333322 6777
Q ss_pred hhHHHHHHHHHHhhhhcc-cCcceeEehhHHHHHH
Q 003690 718 VLVGFAALAMAAISWKLE-TSQSYWIWHSIWHVSI 751 (802)
Q Consensus 718 ~l~G~i~la~~aI~~flE-T~dnY~~~HSiWHi~I 751 (802)
++.....+|++ +=.++. .=..|.=-|++||..-
T Consensus 262 ~i~~~~~LA~s-LEi~DFpPy~~~iDAHALWHlaT 295 (319)
T KOG2970|consen 262 LIVIFFFLAMS-LEIFDFPPYAWLIDAHALWHLAT 295 (319)
T ss_pred HHHHHHHHHHH-HHhhcCCchhhhcchHHHHHhhc
Confidence 77765554442 222332 2334444699999753
No 16
>PHA02887 EGF-like protein; Provisional
Probab=86.97 E-value=0.39 Score=46.40 Aligned_cols=44 Identities=30% Similarity=0.737 Sum_probs=34.4
Q ss_pred eEEEEEEecccc----cCCCCCcceeeecccCCceEeeeeeeCCCCCCcCCCc
Q 003690 488 ETVMSVSLERCP----KRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSV 536 (802)
Q Consensus 488 ~v~~sisl~~C~----~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~GwdCtd 536 (802)
+...+..-.||+ +=|= ||+|.++.+.. -.+|.|..||.|.-|..
T Consensus 76 ~rk~~~hf~pC~~eyk~YCi-HG~C~yI~dL~----epsCrC~~GYtG~RCE~ 123 (126)
T PHA02887 76 KRKNSMFFEKCKNDFNDFCI-NGECMNIIDLD----EKFCICNKGYTGIRCDE 123 (126)
T ss_pred hhccccCccccChHhhCEee-CCEEEccccCC----CceeECCCCcccCCCCc
Confidence 345556667998 4684 99999997654 35999999999999964
No 17
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=86.91 E-value=0.25 Score=41.98 Aligned_cols=35 Identities=34% Similarity=0.574 Sum_probs=19.1
Q ss_pred cCCCCCcceeeeccc-CCceEeeeeeeCCCCCCcCCCcc
Q 003690 500 KRCSSHGQCRNAFDA-SGLTLYSFCACDRDHGGFDCSVE 537 (802)
Q Consensus 500 ~~Cg~~G~C~~l~~~-sG~~~ys~C~C~~G~~GwdCtd~ 537 (802)
-.|++||+..+-.-. .| -..|.|...|+|.||+.-
T Consensus 17 i~CSGHGr~flDg~~~dG---~p~CECn~Cy~GpdCS~~ 52 (56)
T PF04863_consen 17 ISCSGHGRAFLDGLIADG---SPVCECNSCYGGPDCSTL 52 (56)
T ss_dssp S--TTSEE--TTS-EETT---EE--EE-TTEESTTS-EE
T ss_pred CCcCCCCeeeeccccccC---CccccccCCcCCCCcccC
Confidence 379999999853221 22 278999999999999853
No 18
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=86.37 E-value=0.84 Score=33.64 Aligned_cols=34 Identities=29% Similarity=0.788 Sum_probs=25.7
Q ss_pred cccc--cCCCCCcceeeecccCCceEeeeeeeCCCCC-CcCCC
Q 003690 496 ERCP--KRCSSHGQCRNAFDASGLTLYSFCACDRDHG-GFDCS 535 (802)
Q Consensus 496 ~~C~--~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~-GwdCt 535 (802)
..|. +.|..+|.|... .|.| .|.|..||. |..|.
T Consensus 3 ~~C~~~~~C~~~~~C~~~---~g~~---~C~C~~g~~~g~~C~ 39 (39)
T smart00179 3 DECASGNPCQNGGTCVNT---VGSY---RCECPPGYTDGRNCE 39 (39)
T ss_pred ccCcCCCCcCCCCEeECC---CCCe---EeECCCCCccCCcCC
Confidence 4565 479888999854 3434 699999999 98883
No 19
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=86.24 E-value=3.1 Score=42.64 Aligned_cols=34 Identities=12% Similarity=0.080 Sum_probs=29.1
Q ss_pred ccchhHhHhHhHHHHHHHHHHHHhhcCchhHHHHh
Q 003690 598 LSFNVLQFMDFWLSFMAVVSTFIYLTTIDEALKRT 632 (802)
Q Consensus 598 m~ydvLQf~DF~gSi~SiwvT~i~MA~~~~~lk~~ 632 (802)
+....||++||...+.++....+.|+++.+ ++..
T Consensus 59 lc~~~~~~L~~~~~~~s~~~~~vtl~~~a~-~~~~ 92 (186)
T PF12036_consen 59 LCIMDWHRLQNIDFIGSFLSIWVTLCAMAR-LDEP 92 (186)
T ss_pred EeechHHHHHHHHHHHHHHHHHHHHHHhcc-CCHH
Confidence 789999999999999999999999988775 3443
No 20
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=86.14 E-value=0.7 Score=33.37 Aligned_cols=34 Identities=29% Similarity=0.810 Sum_probs=25.3
Q ss_pred cccc--cCCCCCcceeeecccCCceEeeeeeeCCCCCCcCCC
Q 003690 496 ERCP--KRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCS 535 (802)
Q Consensus 496 ~~C~--~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~GwdCt 535 (802)
..|. ..|..+|.|.... |.| .|.|..||.|..|.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~---~~~---~C~C~~g~~g~~C~ 38 (38)
T cd00054 3 DECASGNPCQNGGTCVNTV---GSY---RCSCPPGYTGRNCE 38 (38)
T ss_pred ccCCCCCCcCCCCEeECCC---CCe---EeECCCCCcCCcCC
Confidence 4565 4788889998542 323 79999999998883
No 21
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=85.53 E-value=0.53 Score=59.96 Aligned_cols=36 Identities=31% Similarity=0.845 Sum_probs=28.5
Q ss_pred ccc-ccCCCCCcceeeecccCCceEeeeeeeCCCCCCcCCCcc
Q 003690 496 ERC-PKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVE 537 (802)
Q Consensus 496 ~~C-~~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~GwdCtd~ 537 (802)
+-| -+.||+||.|.- +.+| | +|.|++||.|.+|-.+
T Consensus 1240 DlCYs~pC~nng~C~s--rEgg-Y---tCeCrpg~tGehCEvs 1276 (2531)
T KOG4289|consen 1240 DLCYSGPCGNNGRCRS--REGG-Y---TCECRPGFTGEHCEVS 1276 (2531)
T ss_pred HhhhcCCCCCCCceEE--ecCc-e---eEEecCCccccceeee
Confidence 445 379999999994 3444 6 9999999999999643
No 22
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=84.93 E-value=0.4 Score=29.80 Aligned_cols=13 Identities=31% Similarity=0.864 Sum_probs=10.9
Q ss_pred eeeeCCCCCCcCC
Q 003690 522 FCACDRDHGGFDC 534 (802)
Q Consensus 522 ~C~C~~G~~GwdC 534 (802)
.|.|.+||.|..|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 4999999999988
No 23
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=80.27 E-value=1.2 Score=52.33 Aligned_cols=59 Identities=27% Similarity=0.428 Sum_probs=39.6
Q ss_pred ecccCCcEEEEEEeecC---C-CceEEEEEEecccccCCCCCcceeeecccCCceEeeeeeeCCCCCCcCCCc
Q 003690 468 LYVREGTWGFGIRHVNT---S-KSETVMSVSLERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSV 536 (802)
Q Consensus 468 pYPetGtWYLsL~~~n~---~-~~~v~~sisl~~C~~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~GwdCtd 536 (802)
-|-++|.|+...-..+. - ....-...+...||.+|.++|+|.. | .|.|+.||.|.||+.
T Consensus 218 ~r~~~~~~~~~~~~~~~ic~c~~~~~g~~c~~~~C~~~c~~~g~c~~-----G-----~CIC~~Gf~G~dC~e 280 (525)
T KOG1225|consen 218 GRCREGRCFCTAGFFDGICECPEGYFGPLCSTIYCPGGCTGRGQCVE-----G-----RCICPPGFTGDDCDE 280 (525)
T ss_pred cccccCcccccccccCceeecCCceeCCccccccCCCCCcccceEeC-----C-----eEeCCCCCcCCCCCc
Confidence 45667788775522111 0 1112222335689999999999993 4 899999999999986
No 24
>smart00181 EGF Epidermal growth factor-like domain.
Probab=78.16 E-value=2.1 Score=31.23 Aligned_cols=28 Identities=32% Similarity=0.706 Sum_probs=21.2
Q ss_pred cCCCCCcceeeecccCCceEeeeeeeCCCCCC-cCC
Q 003690 500 KRCSSHGQCRNAFDASGLTLYSFCACDRDHGG-FDC 534 (802)
Q Consensus 500 ~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~G-wdC 534 (802)
+.|..+ .|... .|.| .|.|..||.| ..|
T Consensus 6 ~~C~~~-~C~~~---~~~~---~C~C~~g~~g~~~C 34 (35)
T smart00181 6 GPCSNG-TCINT---PGSY---TCSCPPGYTGDKRC 34 (35)
T ss_pred CCCCCC-EEECC---CCCe---EeECCCCCccCCcc
Confidence 368777 89865 2323 8999999999 887
No 25
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=78.05 E-value=2.2 Score=42.06 Aligned_cols=37 Identities=32% Similarity=0.832 Sum_probs=29.5
Q ss_pred ecccc----cCCCCCcceeeecccCCceEeeeeeeCCCCCCcCCCc
Q 003690 495 LERCP----KRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSV 536 (802)
Q Consensus 495 l~~C~----~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~GwdCtd 536 (802)
.++|+ +=| =||+|..+.+... .+|.|..||.|.-|-.
T Consensus 42 i~~Cp~ey~~YC-lHG~C~yI~dl~~----~~CrC~~GYtGeRCEh 82 (139)
T PHA03099 42 IRLCGPEGDGYC-LHGDCIHARDIDG----MYCRCSHGYTGIRCQH 82 (139)
T ss_pred cccCChhhCCEe-ECCEEEeeccCCC----ceeECCCCcccccccc
Confidence 47887 346 5899999987653 4899999999999963
No 26
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=77.45 E-value=15 Score=31.17 Aligned_cols=66 Identities=23% Similarity=0.425 Sum_probs=37.6
Q ss_pred EEEeecCCCCCCceEEEEEeccceeeEEEEEeecCCCCCCcccccccccccccccccccccccCCccceeEEEecccCCc
Q 003690 395 YFLLDIPRGAAGGSIHIQLTSDTKIKHEIYAKSGGLPSLQSWDYYYANRTNNSVGSMFFKLYNSSEEKVDFYILYVREGT 474 (802)
Q Consensus 395 ~f~l~lp~gdSGG~L~i~L~~nks~~~~Vyar~g~~Ptlt~~d~~~~~~ts~s~~s~f~~~~nss~~~a~l~IpYPetGt 474 (802)
+|.+++| +|+.++|+|..... +..++.....-+++..+|. .+ .....+..+.+.-|++|+
T Consensus 4 ~y~f~v~---ag~~l~i~l~~~~~-d~dl~l~~~~g~~~~~~d~-----~~-----------~~~~~~~~i~~~~~~~Gt 63 (70)
T PF04151_consen 4 YYSFTVP---AGGTLTIDLSGGSG-DADLYLYDSNGNSLASYDD-----SS-----------QSGGNDESITFTAPAAGT 63 (70)
T ss_dssp EEEEEES---TTEEEEEEECETTS-SEEEEEEETTSSSCEECCC-----CT-----------CETTSEEEEEEEESSSEE
T ss_pred EEEEEEc---CCCEEEEEEcCCCC-CeEEEEEcCCCCchhhhee-----cC-----------CCCCCccEEEEEcCCCEE
Confidence 5777777 67779999865542 3334434432355544431 00 001123444566699999
Q ss_pred EEEEEE
Q 003690 475 WGFGIR 480 (802)
Q Consensus 475 WYLsL~ 480 (802)
||+.++
T Consensus 64 Yyi~V~ 69 (70)
T PF04151_consen 64 YYIRVY 69 (70)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999874
No 27
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=76.61 E-value=1.7 Score=52.88 Aligned_cols=34 Identities=29% Similarity=0.862 Sum_probs=27.7
Q ss_pred EEecccccC----CCCCcceeeecccCCceEeeeeeeCCCCCCcCCCc
Q 003690 493 VSLERCPKR----CSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSV 536 (802)
Q Consensus 493 isl~~C~~~----Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~GwdCtd 536 (802)
...-.|+.. ||+||+|. =| .|.|++||.|-.|.=
T Consensus 544 CDnfsC~r~~g~lC~g~G~C~-----CG-----~CvC~~GwtG~~C~C 581 (783)
T KOG1226|consen 544 CDNFSCERHKGVLCGGHGRCE-----CG-----RCVCNPGWTGSACNC 581 (783)
T ss_pred ccCcccccccCcccCCCCeEe-----CC-----cEEcCCCCccCCCCC
Confidence 334577876 99999999 34 899999999999963
No 28
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=76.09 E-value=1.7 Score=52.96 Aligned_cols=35 Identities=29% Similarity=0.663 Sum_probs=29.5
Q ss_pred EecccccCCCCCcceeeecccCCceEeeeeeeCCCCCCcCCCcc
Q 003690 494 SLERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVE 537 (802)
Q Consensus 494 sl~~C~~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~GwdCtd~ 537 (802)
..+-||.+|++||.|-.- + .|+|.+||.+.+|...
T Consensus 624 ~~~~~~~~C~g~GVCnn~----~-----~ChC~~gwapp~C~~~ 658 (716)
T KOG3607|consen 624 NSSCCPTTCNGHGVCNNE----L-----NCHCEPGWAPPFCFIF 658 (716)
T ss_pred cccccccccCCCcccCCC----c-----ceeeCCCCCCCccccc
Confidence 346789999999999943 2 8999999999999864
No 29
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.59 E-value=2.6 Score=46.21 Aligned_cols=40 Identities=25% Similarity=0.576 Sum_probs=29.7
Q ss_pred cccc----cCCCCCcceeeecccCCceEeeeeeeCCCCCCcCCCccc
Q 003690 496 ERCP----KRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVEL 538 (802)
Q Consensus 496 ~~C~----~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~GwdCtd~~ 538 (802)
.+|| +.|+++|+|+=-.+..| ...|.|..||+|.-|.+=-
T Consensus 142 l~Cpggser~C~GnG~C~GdGsR~G---sGkCkC~~GY~Gp~C~~Cg 185 (350)
T KOG4260|consen 142 LQCPGGSERPCFGNGSCHGDGSREG---SGKCKCETGYTGPLCRYCG 185 (350)
T ss_pred ccCCCCCcCCcCCCCcccCCCCCCC---CCcccccCCCCCccccccc
Confidence 3565 57999999985433322 2399999999999998743
No 30
>smart00051 DSL delta serrate ligand.
Probab=60.07 E-value=7 Score=33.81 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=21.6
Q ss_pred ccCCCCCcceeeecccCCceEeeeeeeCCCCCCcCC
Q 003690 499 PKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDC 534 (802)
Q Consensus 499 ~~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~GwdC 534 (802)
-+|+.+|..|.. .| .|.|.+||.|..|
T Consensus 37 ~~d~~~~~~Cd~----~G-----~~~C~~Gw~G~~C 63 (63)
T smart00051 37 RDDFFGHYTCDE----NG-----NKGCLEGWMGPYC 63 (63)
T ss_pred CccccCCccCCc----CC-----CEecCCCCcCCCC
Confidence 356778899962 34 7999999999988
No 31
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=56.46 E-value=9.4 Score=30.98 Aligned_cols=28 Identities=32% Similarity=0.929 Sum_probs=21.3
Q ss_pred CCCCCcc----eeeecccCCceEeeeeeeCCCCCCcCCCc
Q 003690 501 RCSSHGQ----CRNAFDASGLTLYSFCACDRDHGGFDCSV 536 (802)
Q Consensus 501 ~Cg~~G~----C~~l~~~sG~~~ys~C~C~~G~~GwdCtd 536 (802)
+|.++|. |... .| .|.|+.|+.|..|..
T Consensus 3 ~C~~~g~~~~~C~~~---~G-----~C~C~~~~~G~~C~~ 34 (50)
T cd00055 3 DCNGHGSLSGQCDPG---TG-----QCECKPNTTGRRCDR 34 (50)
T ss_pred cCcCCCCCCccccCC---CC-----EEeCCCcCCCCCCCC
Confidence 4666665 8742 45 899999999999963
No 32
>COG5237 PER1 Predicted membrane protein [Function unknown]
Probab=56.42 E-value=23 Score=38.77 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=30.4
Q ss_pred hhHHHH-HHHHHHHHHhhhhhccccceeeeccchhHhHhHhHHHHH----HHHHHHHhhcCchh
Q 003690 569 KAFAEW-VLFTASGISSGLYHACDVGTWCALSFNVLQFMDFWLSFM----AVVSTFIYLTTIDE 627 (802)
Q Consensus 569 r~~~Ea-~Vy~fTmffS~fYHACD~g~~Cim~ydvLQf~DF~gSi~----SiwvT~i~MA~~~~ 627 (802)
++...+ ++.-.+-..|+.+|.=|.- .=+-||-+.+.+ .+-++++-|-.+..
T Consensus 135 ~~~l~wv~igmlAwi~SsvFHird~~--------iTeklDYF~AgltVLfGfy~~lvrm~~~~~ 190 (319)
T COG5237 135 LYYLQWVYIGMLAWISSSVFHIRDNT--------ITEKLDYFLAGLTVLFGFYMALVRMILIVS 190 (319)
T ss_pred eEEeeHHHHHHHHHHHHhheeeeccc--------hhhhHHHHHhhHHHHHHHHHHHHHHHHhhc
Confidence 355666 6667777889999998862 111255555443 33445555555533
No 33
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=55.79 E-value=9.2 Score=29.95 Aligned_cols=25 Identities=28% Similarity=0.670 Sum_probs=21.0
Q ss_pred cCCCCCcceeeecccCCceEeeeeeeCCCCC
Q 003690 500 KRCSSHGQCRNAFDASGLTLYSFCACDRDHG 530 (802)
Q Consensus 500 ~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~ 530 (802)
+.|..++.|.-.. |.| .|.|++||.
T Consensus 10 ~~C~~~~~C~N~~---Gsy---~C~C~~Gy~ 34 (42)
T PF07645_consen 10 HNCPENGTCVNTE---GSY---SCSCPPGYE 34 (42)
T ss_dssp SSSSTTSEEEEET---TEE---EEEESTTEE
T ss_pred CcCCCCCEEEcCC---CCE---EeeCCCCcE
Confidence 5798899999873 546 799999998
No 34
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=53.43 E-value=7.7 Score=31.11 Aligned_cols=28 Identities=32% Similarity=0.909 Sum_probs=21.3
Q ss_pred CCCCCc----ceeeecccCCceEeeeeeeCCCCCCcCCCc
Q 003690 501 RCSSHG----QCRNAFDASGLTLYSFCACDRDHGGFDCSV 536 (802)
Q Consensus 501 ~Cg~~G----~C~~l~~~sG~~~ys~C~C~~G~~GwdCtd 536 (802)
+|.++| .|... .| .|.|++||.|..|..
T Consensus 2 ~C~~~~~~~~~C~~~---~G-----~C~C~~~~~G~~C~~ 33 (49)
T PF00053_consen 2 DCNPHGSSSQTCDPS---TG-----QCVCKPGTTGPRCDQ 33 (49)
T ss_dssp SSTTCCBCCSSEEET---CE-----EESBSTTEESTTS-E
T ss_pred cCcCCCCCCCcccCC---CC-----EEeccccccCCcCcC
Confidence 466666 88862 34 999999999999974
No 35
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=51.17 E-value=15 Score=33.94 Aligned_cols=35 Identities=20% Similarity=0.518 Sum_probs=25.2
Q ss_pred EEEEEEecccc--cCCCCCcceeeecccCCceEeeeeeeCCCCC
Q 003690 489 TVMSVSLERCP--KRCSSHGQCRNAFDASGLTLYSFCACDRDHG 530 (802)
Q Consensus 489 v~~sisl~~C~--~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~ 530 (802)
+..+.-.+.|- +.||.+|.|... . -..|+|-+||.
T Consensus 71 ~~~~~p~d~Cd~y~~CG~~g~C~~~--~-----~~~C~Cl~GF~ 107 (110)
T PF00954_consen 71 VFWSAPKDQCDVYGFCGPNGICNSN--N-----SPKCSCLPGFE 107 (110)
T ss_pred EEEEecccCCCCccccCCccEeCCC--C-----CCceECCCCcC
Confidence 33445557895 899999999632 1 22699999985
No 36
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=48.11 E-value=9.7 Score=29.57 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=20.0
Q ss_pred cCCCCCcceeeecccCCceEeeeeeeCCCCCCcC
Q 003690 500 KRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFD 533 (802)
Q Consensus 500 ~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~Gwd 533 (802)
..|+.+-+|..... .| .|.|++||.|-+
T Consensus 6 ~~C~~nA~C~~~~~---~~---~C~C~~Gy~GdG 33 (36)
T PF12947_consen 6 GGCHPNATCTNTGG---SY---TCTCKPGYEGDG 33 (36)
T ss_dssp GGS-TTCEEEE-TT---SE---EEEE-CEEECCS
T ss_pred CCCCCCcEeecCCC---CE---EeECCCCCccCC
Confidence 58999999997743 23 999999999864
No 37
>KOG3879 consensus Predicted membrane protein [Function unknown]
Probab=47.48 E-value=2.8e+02 Score=30.43 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=15.1
Q ss_pred CeeeeeccCCCCCCCCCCCCCC
Q 003690 777 TYELTRQDSMPRGDSEGRERPE 798 (802)
Q Consensus 777 ~~~~t~~d~~~r~~~~~~~~~~ 798 (802)
.|.+++.|+-+-.|.+.+|-|.
T Consensus 213 sy~th~~d~e~~ee~~~~~~~~ 234 (267)
T KOG3879|consen 213 SYDTHHEDNEPEEETEVPEEPK 234 (267)
T ss_pred ceecccccCCCCcccCCCCCcc
Confidence 5778888887776666555443
No 38
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=38.19 E-value=23 Score=48.47 Aligned_cols=42 Identities=26% Similarity=0.642 Sum_probs=33.8
Q ss_pred EEEEEeccc-ccCCCCCcceeeecccCCceEeeeeeeCCCCCCcCCCcc
Q 003690 490 VMSVSLERC-PKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVE 537 (802)
Q Consensus 490 ~~sisl~~C-~~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~GwdCtd~ 537 (802)
.-++.++|| ++.|-.-|+|... ++| | -|.|+.||.|--|-.+
T Consensus 3898 ~CEi~~epC~snPC~~GgtCip~--~n~-f---~CnC~~gyTG~~Ce~~ 3940 (4289)
T KOG1219|consen 3898 HCEIDLEPCASNPCLTGGTCIPF--YNG-F---LCNCPNGYTGKRCEAR 3940 (4289)
T ss_pred ccccccccccCCCCCCCCEEEec--CCC-e---eEeCCCCccCceeecc
Confidence 345778999 5999999999976 344 4 7999999999999643
No 39
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=33.36 E-value=27 Score=25.25 Aligned_cols=15 Identities=27% Similarity=0.665 Sum_probs=12.5
Q ss_pred eeeeCCCCC----CcCCCc
Q 003690 522 FCACDRDHG----GFDCSV 536 (802)
Q Consensus 522 ~C~C~~G~~----GwdCtd 536 (802)
.|+|.+||. |-.|.|
T Consensus 3 ~C~C~~Gy~l~~d~~~C~D 21 (24)
T PF12662_consen 3 TCSCPPGYQLSPDGRSCED 21 (24)
T ss_pred EeeCCCCCcCCCCCCcccc
Confidence 799999997 667775
No 40
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=31.38 E-value=36 Score=46.89 Aligned_cols=38 Identities=29% Similarity=0.654 Sum_probs=31.2
Q ss_pred ecccc-cCCCCCcceeeecccCCceEeeeeeeCCCCCCcCCCccc
Q 003690 495 LERCP-KRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVEL 538 (802)
Q Consensus 495 l~~C~-~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~GwdCtd~~ 538 (802)
.+.|- |-|+.-|+|...... | .|.|.+||.|-.|-++.
T Consensus 3942 i~eCs~n~C~~gg~C~n~~gs---f---~CncT~g~~gr~c~~~~ 3980 (4289)
T KOG1219|consen 3942 ISECSKNVCGTGGQCINIPGS---F---HCNCTPGILGRTCCAEK 3980 (4289)
T ss_pred ccccccccccCCceeeccCCc---e---EeccChhHhcccCcccc
Confidence 56687 789999999977533 3 89999999999997654
No 41
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=20.28 E-value=4.3e+02 Score=22.36 Aligned_cols=64 Identities=20% Similarity=0.302 Sum_probs=40.7
Q ss_pred eEEEEeecCchheeeEEeceeeeeccccCCcCCCCCceEEEEeecCCCCCccccccCC--CCCcceeeecCCCCcceEEE
Q 003690 222 KVFFLDVLGIAEQLIIMAMNVTFSMTQSNNTLNAGGANIVCFARHGAMPSEILHDYSG--DISNGPLIVDSPKVGRWYIT 299 (802)
Q Consensus 222 ~~y~l~v~~~a~~l~i~~~~~~~~~~~~~~~~~~~~cpl~~~~r~~alP~~~~~d~s~--d~~~c~L~l~sPpwgrW~~v 299 (802)
.+|++++|.-.. ++|++.+-. .+.-|-++-..| +.....|++. +...-.+.+..|.-|+||+.
T Consensus 3 D~y~f~v~ag~~-l~i~l~~~~------------~d~dl~l~~~~g--~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~ 67 (70)
T PF04151_consen 3 DYYSFTVPAGGT-LTIDLSGGS------------GDADLYLYDSNG--NSLASYDDSSQSGGNDESITFTAPAAGTYYIR 67 (70)
T ss_dssp EEEEEEESTTEE-EEEEECETT------------SSEEEEEEETTS--SSCEECCCCTCETTSEEEEEEEESSSEEEEEE
T ss_pred EEEEEEEcCCCE-EEEEEcCCC------------CCeEEEEEcCCC--CchhhheecCCCCCCccEEEEEcCCCEEEEEE
Confidence 579999997776 888874432 144455555554 4444444443 23445666777999999876
Q ss_pred E
Q 003690 300 I 300 (802)
Q Consensus 300 ~ 300 (802)
+
T Consensus 68 V 68 (70)
T PF04151_consen 68 V 68 (70)
T ss_dssp E
T ss_pred E
Confidence 4
No 42
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=20.10 E-value=93 Score=25.01 Aligned_cols=15 Identities=27% Similarity=0.716 Sum_probs=13.5
Q ss_pred eeeeCCCCCCcCCCc
Q 003690 522 FCACDRDHGGFDCSV 536 (802)
Q Consensus 522 ~C~C~~G~~GwdCtd 536 (802)
.|.|++|+.|..|..
T Consensus 19 ~C~C~~~~~G~~C~~ 33 (46)
T smart00180 19 QCECKPNVTGRRCDR 33 (46)
T ss_pred EEECCCCCCCCCCCc
Confidence 899999999999963
Done!