Query 003690
Match_columns 802
No_of_seqs 147 out of 154
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 17:41:03 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003690.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1741-1745//hhsearch_pdb/003690hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e26_A Reelin, reeler protein; 1.0 1 1 53.5 6.8 40 489-538 527-567 (725)
2 2e26_A Reelin, reeler protein; 1.0 1 1 52.7 1.9 10 160-169 162-171 (725)
3 2ddu_A Reelin; beta-jelly-roll 1.0 1 1 52.0 0.4 33 496-538 192-226 (387)
4 2ygo_A WIF-1, WNT inhibitory f 1.0 1 1 38.4 6.1 34 494-536 147-180 (188)
5 2wg3_C Hedgehog-interacting pr 1.0 1 1 30.8 0.2 32 495-536 392-423 (463)
6 2ygq_A WIF-1, WNT inhibitory f 1.0 1 1 30.7 2.1 34 496-538 277-310 (324)
7 1xdt_R Hbegf, heparin-binding 1.0 1 1 29.1 2.0 38 493-535 35-76 (79)
8 2p28_B Integrin beta-2; hybrid 1.0 1 1 28.9 1.8 32 496-537 178-215 (217)
9 3g5c_A ADAM 22; alpha/beta fol 1.0 1 1 28.5 1.9 33 496-537 445-482 (510)
10 1q4g_A Prostaglandin G/H synth 1.0 1 1 28.5 5.3 75 496-576 3-86 (553)
No 1
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*
Probab=1.00 E-value=1 Score=53.47 Aligned_cols=40 Identities=35% Similarity=0.813 Sum_probs=32.8
Q ss_pred EEEEEE-ECCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCC
Q ss_conf 899997-12666678888402430026896376543208999876789653
Q 003690 489 TVMSVS-LERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVEL 538 (802)
Q Consensus 489 v~~sis-l~~C~~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~GwdCtd~~ 538 (802)
..-..+ -..||++|++||.|. .| .|.|+.||.|.+|....
T Consensus 527 ~g~dc~i~~~Cp~~C~ghG~C~-----~G-----~C~Cd~G~~G~~C~~~~ 567 (725)
T 2e26_A 527 AIDNVYIGDGCLDMCSGHGRCV-----QG-----SCVCDEQWGGLYCDEPE 567 (725)
T ss_dssp EEEEEEEESCSSGGGGGSEEEE-----TT-----EEEECTTEESTTSCEES
T ss_pred CCCCCCCCCCCCCCCCCCCEEC-----CC-----CEEECCCCCCCCCCCCC
T ss_conf 4566435677786568985789-----99-----77618996588767667
No 2
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*
Probab=1.00 E-value=1 Score=52.72 Aligned_cols=10 Identities=40% Similarity=1.159 Sum_probs=6.9
Q ss_pred CEEEEEECCC
Q ss_conf 3489884478
Q 003690 160 AWYLGFFNGV 169 (802)
Q Consensus 160 ~Wyig~~~~~ 169 (802)
-|+.++++.-
T Consensus 162 rw~~~~~~~~ 171 (725)
T 2e26_A 162 RWYQGFYPAG 171 (725)
T ss_dssp EEEEEEECTT
T ss_pred EEECCCCCCC
T ss_conf 9961421577
No 3
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Probab=1.00 E-value=1 Score=52.00 Aligned_cols=33 Identities=42% Similarity=0.948 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCC--CCCCC
Q ss_conf 26666788884024300268963765432089998767--89653
Q 003690 496 ERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFD--CSVEL 538 (802)
Q Consensus 496 ~~C~~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~Gwd--Ctd~~ 538 (802)
.+||+.|++||.|. +| .|.|+.||.|-| |..+.
T Consensus 192 ~~Cp~~CsGhG~C~-----~g-----~C~Cd~G~~g~d~~C~~~~ 226 (387)
T 2ddu_A 192 EPCPSYCSGHGDCI-----SG-----VCFCDLGYTAAQGTCVSNT 226 (387)
T ss_dssp SCCGGGGGGSEEEE-----TT-----EEEECTTEEEETTEEEESS
T ss_pred CCCCCCCCCCCEEC-----CC-----EEEECCCCCCCCCCCCCCC
T ss_conf 56854467774466-----88-----1773588646777666655
No 4
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Probab=1.00 E-value=1 Score=38.45 Aligned_cols=34 Identities=26% Similarity=0.740 Sum_probs=28.8
Q ss_pred EECCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 7126666788884024300268963765432089998767896
Q 003690 494 SLERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSV 536 (802)
Q Consensus 494 sl~~C~~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~GwdCtd 536 (802)
...-|.+.|.+.|.|.. -+ .|+|.+||.|-+|..
T Consensus 147 ~~~~C~~~C~ngG~Cv~----P~-----~C~C~~Gw~G~~C~~ 180 (188)
T 2ygo_A 147 QQAECPGGCRNGGFCNE----RR-----ICECPDGFHGPHCEG 180 (188)
T ss_dssp CCCCCTTCCCTTCEECT----TS-----CEECCTTCBTTTTCB
T ss_pred CCCCCCCCCCCCCEECC----CC-----CCCCCCCCCCCCCCC
T ss_conf 57754887889889589----98-----125968987987737
No 5
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=1.00 E-value=1 Score=30.84 Aligned_cols=32 Identities=28% Similarity=0.779 Sum_probs=22.1
Q ss_pred ECCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 126666788884024300268963765432089998767896
Q 003690 495 LERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSV 536 (802)
Q Consensus 495 l~~C~~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~GwdCtd 536 (802)
...|...|. ||.|.. .+ .|.|.+||.|-.|..
T Consensus 392 ~~~C~~~C~-nG~C~~----~~-----~C~C~~G~~G~~C~~ 423 (463)
T 2wg3_C 392 TSECSRLCR-NGYCTP----TG-----KCCCSPGWEGDFCRT 423 (463)
T ss_dssp CCHHHHHCC-SEEECT----TS-----CEEECTTEESTTSCE
T ss_pred CCCCCCCCC-CCCCCC----CC-----EECCCCCCCCCCCCC
T ss_conf 363558888-975677----87-----688888828876876
No 6
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=1.00 E-value=1 Score=30.74 Aligned_cols=34 Identities=26% Similarity=0.783 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCC
Q ss_conf 2666678888402430026896376543208999876789653
Q 003690 496 ERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVEL 538 (802)
Q Consensus 496 ~~C~~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~GwdCtd~~ 538 (802)
..|...|+.+|.|.. .+ .|.|.+||.|-.|....
T Consensus 277 ~~C~~~C~~~g~C~~----~~-----~C~C~~G~~G~~C~~~~ 310 (324)
T 2ygq_A 277 PVCEPGCGAHGTCHE----PN-----KCQCQEGWHGRHCNKRY 310 (324)
T ss_dssp -------------------------------------------
T ss_pred CCCCCCCCCCCEECC----CC-----EEECCCCCCCCCCCCCC
T ss_conf 878898999899799----99-----86889988478888888
No 7
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1
Probab=1.00 E-value=1 Score=29.05 Aligned_cols=38 Identities=24% Similarity=0.607 Sum_probs=28.9
Q ss_pred EEECCCC----CCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 9712666----678888402430026896376543208999876789
Q 003690 493 VSLERCP----KRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCS 535 (802)
Q Consensus 493 isl~~C~----~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~GwdCt 535 (802)
...+||. +.| -||.|..+...+. + .|.|..||.|.-|-
T Consensus 35 ~~~~pC~~~~~~yC-lnG~C~~i~~~~~-~---~C~C~~GYtG~RCE 76 (79)
T 1xdt_R 35 KKRDPCLRKYKDFC-IHGECKYVKELRA-P---SCICHPGYHGERCH 76 (79)
T ss_dssp ----CTTTTTTTCC-SSEEECCBGGGTB-C---CEEECTTEESTTCC
T ss_pred CCCCCCCCCCCCCC-CCCEEEEECCCCC-E---EEECCCCCCCCCCC
T ss_conf 53787785235727-7999652358898-4---77739995664432
No 8
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=1.00 E-value=1 Score=28.93 Aligned_cols=32 Identities=28% Similarity=0.751 Sum_probs=25.7
Q ss_pred CCCCCC----CCCC--CCEEEECCCCCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 266667----8888--40243002689637654320899987678965
Q 003690 496 ERCPKR----CSSH--GQCRNAFDASGLTLYSFCACDRDHGGFDCSVE 537 (802)
Q Consensus 496 ~~C~~~----Cg~~--G~C~~l~~~sG~~~ys~C~C~~G~~GwdCtd~ 537 (802)
..|+.+ |++| |.|. .| .|.|.+||.|.+|..+
T Consensus 178 ~~C~~~~g~~C~~~~~G~C~-----~g-----~C~C~~G~~G~~C~~~ 215 (217)
T 2p28_B 178 INCERYNGQVCGGPGRGLCF-----CG-----KCRCHPGFEGSACQHH 215 (217)
T ss_dssp SCSCEETTEETTCTTTEEEE-----TT-----EEEECTTEESTTSCEE
T ss_pred CCCCCCCCCCCCCCCCCEEE-----CC-----EEECCCCCCCCCCCCC
T ss_conf 65779999878799973780-----99-----5488999846885888
No 9
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens}
Probab=1.00 E-value=1 Score=28.54 Aligned_cols=33 Identities=36% Similarity=0.788 Sum_probs=27.3
Q ss_pred CCCC-----CCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 2666-----67888840243002689637654320899987678965
Q 003690 496 ERCP-----KRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVE 537 (802)
Q Consensus 496 ~~C~-----~~Cg~~G~C~~l~~~sG~~~ys~C~C~~G~~GwdCtd~ 537 (802)
+.|+ ..|++||.|-.. + .|+|++||.+.+|...
T Consensus 445 ~~C~~~~~~~~C~~~GVCNn~----~-----~CHC~~GwaPP~C~~~ 482 (510)
T 3g5c_A 445 STCLSSKEGTICSGNGVCSNE----L-----KCVCNRHWIGSDCNTY 482 (510)
T ss_dssp CCCCCSSTTCSGGGTEEEBTT----S-----CEEECTTEESTTSCEE
T ss_pred CCCCCCCCCCCCCCCCEECCC----C-----CCCCCCCCCCCCCCCC
T ss_conf 579875441406888720889----8-----7688989899878777
No 10
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=1.00 E-value=1 Score=28.52 Aligned_cols=75 Identities=15% Similarity=0.303 Sum_probs=0.0
Q ss_pred CCCC-CCCCCCCCEEE-ECCCCCCEEEEEEEEC-CCCCCCCCCCCCCCHHHHHHH-----HHHHHHHHHHHHHHHH-HHH
Q ss_conf 2666-67888840243-0026896376543208-999876789653203589999-----9999973101378999-999
Q 003690 496 ERCP-KRCSSHGQCRN-AFDASGLTLYSFCACD-RDHGGFDCSVELVSHRGHVQQ-----SVALIASNAAALLPAY-QAL 566 (802)
Q Consensus 496 ~~C~-~~Cg~~G~C~~-l~~~sG~~~ys~C~C~-~G~~GwdCtd~~vs~~~~~~q-----~llLtLSNLaflP~I~-iA~ 566 (802)
.+|. +.|...|.|.. . .|+| .|.|. .||.|..|..+........+. .+...|+|..-+=.+. -..
T Consensus 3 d~C~~~PC~ngG~C~~~~---~~~y---~C~C~~~G~~G~~Ce~~~~~~~~~~~~~p~~~~~~~~~~~~~~~W~~in~~~ 76 (553)
T 1q4g_A 3 NPCCYYPCQHQGICVRFG---LDRY---QCDCTRTGYSGPNCTIPEIWTWLRTTLRPSPSFIHFLLTHGRWLWDFVNATF 76 (553)
T ss_dssp CGGGGCCCCTTCEEEEET---TTEE---EEECTTSSEETTTTCEECHHHHHHHHHCCCHHHHHHHHTSCHHHHHHHTTST
T ss_pred CCCCCCCCCCCCCCCCCC---CCCE---EEECCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHCCCCCEECCCCHH
T ss_conf 868787779989827899---9854---7667999867989888742134320468986887999864764112236677
Q ss_pred HHHHHHHHHH
Q ss_conf 8856788999
Q 003690 567 RQKAFAEWVL 576 (802)
Q Consensus 567 kRr~~~Ea~V 576 (802)
.|+.++..++
T Consensus 77 lr~~~~~~~~ 86 (553)
T 1q4g_A 77 IRDTLMRLVL 86 (553)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 8999999999
Done!