Query 003691
Match_columns 802
No_of_seqs 667 out of 5124
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:12:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0730 AAA+-type ATPase [Post 100.0 3E-118 7E-123 974.8 51.1 690 11-761 2-692 (693)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 8E-113 2E-117 915.8 49.0 551 199-765 185-791 (802)
3 TIGR01243 CDC48 AAA family ATP 100.0 1.6E-98 3E-103 896.1 72.7 722 26-764 3-731 (733)
4 KOG0736 Peroxisome assembly fa 100.0 7.5E-84 1.6E-88 708.9 52.1 614 129-763 303-952 (953)
5 KOG0735 AAA+-type ATPase [Post 100.0 2.5E-72 5.4E-77 611.9 55.8 499 236-766 429-939 (952)
6 COG0464 SpoVK ATPases of the A 100.0 4E-66 8.6E-71 593.9 43.1 489 222-758 2-492 (494)
7 KOG0741 AAA+-type ATPase [Post 100.0 6.1E-58 1.3E-62 484.9 36.5 602 26-658 10-683 (744)
8 COG1222 RPT1 ATP-dependent 26S 100.0 1.3E-58 2.8E-63 474.0 24.0 253 468-745 142-394 (406)
9 KOG0738 AAA+-type ATPase [Post 100.0 1.2E-53 2.5E-58 439.1 21.3 285 467-764 202-490 (491)
10 COG1222 RPT1 ATP-dependent 26S 100.0 5.3E-50 1.1E-54 410.7 25.0 247 196-459 143-392 (406)
11 KOG0739 AAA+-type ATPase [Post 100.0 7.2E-49 1.6E-53 390.1 15.9 293 467-765 123-438 (439)
12 KOG0727 26S proteasome regulat 100.0 2.1E-47 4.5E-52 371.5 18.8 250 470-744 148-397 (408)
13 KOG0730 AAA+-type ATPase [Post 100.0 2.3E-47 4.9E-52 418.5 18.7 252 197-463 427-678 (693)
14 KOG0728 26S proteasome regulat 100.0 4.7E-47 1E-51 368.6 18.7 252 470-746 140-391 (404)
15 CHL00195 ycf46 Ycf46; Provisio 100.0 5.6E-45 1.2E-49 408.1 36.8 398 297-761 81-483 (489)
16 KOG0733 Nuclear AAA ATPase (VC 100.0 2.3E-46 5.1E-51 403.5 23.6 272 191-463 498-773 (802)
17 KOG0734 AAA+-type ATPase conta 100.0 5.8E-47 1.2E-51 402.0 17.9 244 471-743 298-541 (752)
18 KOG0729 26S proteasome regulat 100.0 2.2E-45 4.9E-50 359.8 17.7 260 459-743 159-418 (435)
19 KOG0652 26S proteasome regulat 100.0 1.4E-45 3E-50 360.2 16.1 250 470-744 164-413 (424)
20 KOG0726 26S proteasome regulat 100.0 6.7E-46 1.4E-50 367.8 14.0 249 470-743 178-426 (440)
21 KOG0737 AAA+-type ATPase [Post 100.0 2.9E-43 6.3E-48 363.9 20.1 286 472-763 87-381 (386)
22 KOG0731 AAA+-type ATPase conta 100.0 2.7E-43 5.9E-48 398.7 21.8 249 472-746 306-556 (774)
23 PTZ00454 26S protease regulato 100.0 6E-43 1.3E-47 384.3 23.2 252 470-746 138-389 (398)
24 KOG0736 Peroxisome assembly fa 100.0 3.9E-42 8.5E-47 379.7 22.7 269 195-464 663-937 (953)
25 COG1223 Predicted ATPase (AAA+ 100.0 5.2E-42 1.1E-46 335.6 17.3 242 471-745 115-357 (368)
26 COG0465 HflB ATP-dependent Zn 100.0 5.6E-42 1.2E-46 382.7 18.7 247 471-743 144-390 (596)
27 PRK03992 proteasome-activating 100.0 4.9E-41 1.1E-45 371.7 23.9 257 468-749 122-378 (389)
28 KOG0741 AAA+-type ATPase [Post 100.0 1.1E-41 2.4E-46 361.6 16.7 297 471-778 213-536 (744)
29 PTZ00361 26 proteosome regulat 100.0 1.6E-40 3.5E-45 366.7 21.4 250 470-744 176-425 (438)
30 KOG0740 AAA+-type ATPase [Post 100.0 3.8E-40 8.3E-45 354.0 16.2 280 468-765 144-426 (428)
31 COG1223 Predicted ATPase (AAA+ 100.0 1.3E-38 2.8E-43 311.8 25.1 303 129-459 50-355 (368)
32 KOG0652 26S proteasome regulat 100.0 4.7E-39 1E-43 314.5 20.6 257 170-426 131-396 (424)
33 KOG0727 26S proteasome regulat 100.0 3.3E-39 7.2E-44 314.2 19.3 247 196-459 147-396 (408)
34 KOG0728 26S proteasome regulat 100.0 5E-39 1.1E-43 312.6 19.3 246 196-459 139-388 (404)
35 KOG0726 26S proteasome regulat 100.0 1.3E-39 2.7E-44 323.2 14.4 247 196-459 177-426 (440)
36 KOG0738 AAA+-type ATPase [Post 100.0 8.4E-39 1.8E-43 329.6 20.9 263 198-464 206-474 (491)
37 KOG0734 AAA+-type ATPase conta 100.0 7.9E-39 1.7E-43 340.2 20.3 245 197-459 297-541 (752)
38 KOG0651 26S proteasome regulat 100.0 2.1E-39 4.5E-44 325.5 12.4 248 472-744 127-374 (388)
39 TIGR01241 FtsH_fam ATP-depende 100.0 3.8E-38 8.2E-43 360.9 23.3 249 470-744 48-296 (495)
40 TIGR03689 pup_AAA proteasome A 100.0 8.9E-38 1.9E-42 348.9 22.4 251 469-742 174-477 (512)
41 KOG0732 AAA+-type ATPase conta 100.0 1.2E-37 2.5E-42 361.1 23.0 386 199-585 260-668 (1080)
42 TIGR01242 26Sp45 26S proteasom 100.0 1.9E-37 4.1E-42 342.2 23.1 250 469-743 114-363 (364)
43 KOG0729 26S proteasome regulat 100.0 1E-37 2.3E-42 305.9 16.8 230 196-426 169-402 (435)
44 KOG0735 AAA+-type ATPase [Post 100.0 4.5E-37 9.7E-42 336.5 22.8 228 200-427 663-890 (952)
45 CHL00176 ftsH cell division pr 100.0 1.3E-36 2.9E-41 350.9 22.7 246 472-743 178-423 (638)
46 PTZ00454 26S protease regulato 100.0 3.1E-35 6.7E-40 323.4 24.6 246 197-459 138-386 (398)
47 PRK10733 hflB ATP-dependent me 100.0 3.9E-35 8.4E-40 343.2 22.6 248 472-745 147-394 (644)
48 KOG0731 AAA+-type ATPase conta 100.0 5E-35 1.1E-39 331.7 21.4 228 199-427 306-538 (774)
49 KOG0739 AAA+-type ATPase [Post 100.0 1.8E-35 4E-40 294.6 15.4 228 197-427 126-355 (439)
50 KOG0737 AAA+-type ATPase [Post 100.0 4.8E-35 1E-39 302.9 18.4 228 199-428 87-317 (386)
51 CHL00206 ycf2 Ycf2; Provisiona 100.0 5.6E-35 1.2E-39 350.9 21.5 212 498-743 1617-1877(2281)
52 KOG0732 AAA+-type ATPase conta 100.0 1.9E-35 4E-40 342.9 15.3 266 471-748 259-530 (1080)
53 PTZ00361 26 proteosome regulat 100.0 5.4E-34 1.2E-38 314.9 22.8 247 196-459 175-424 (438)
54 TIGR01243 CDC48 AAA family ATP 100.0 7.6E-34 1.6E-38 339.8 25.6 267 198-464 447-715 (733)
55 PRK03992 proteasome-activating 100.0 1.6E-33 3.5E-38 311.8 24.1 251 197-464 124-377 (389)
56 COG0464 SpoVK ATPases of the A 100.0 3.2E-33 7E-38 321.4 24.5 249 198-462 236-486 (494)
57 TIGR02639 ClpA ATP-dependent C 100.0 3.2E-32 7E-37 324.6 32.0 444 199-703 177-716 (731)
58 PLN00020 ribulose bisphosphate 100.0 1.9E-33 4.2E-38 294.1 18.6 220 474-701 112-354 (413)
59 COG0465 HflB ATP-dependent Zn 100.0 4.6E-33 1E-37 311.3 19.1 229 198-427 144-375 (596)
60 PRK11034 clpA ATP-dependent Cl 100.0 2.6E-31 5.7E-36 311.9 31.1 448 201-703 183-720 (758)
61 TIGR01242 26Sp45 26S proteasom 100.0 8.3E-31 1.8E-35 289.3 26.9 245 197-458 115-362 (364)
62 CHL00195 ycf46 Ycf46; Provisio 100.0 5.3E-31 1.2E-35 295.5 24.8 242 199-463 223-467 (489)
63 TIGR01241 FtsH_fam ATP-depende 100.0 8.6E-31 1.9E-35 300.2 22.5 244 198-459 49-295 (495)
64 KOG0651 26S proteasome regulat 100.0 1.8E-31 3.9E-36 268.4 13.5 231 196-426 124-357 (388)
65 TIGR03689 pup_AAA proteasome A 100.0 3.3E-30 7.1E-35 288.3 22.4 222 196-423 174-411 (512)
66 CHL00176 ftsH cell division pr 100.0 1.3E-29 2.9E-34 292.8 22.0 243 199-459 178-423 (638)
67 TIGR03345 VI_ClpV1 type VI sec 100.0 3.9E-27 8.4E-32 282.3 33.9 455 199-703 182-835 (852)
68 CHL00095 clpC Clp protease ATP 100.0 2.5E-27 5.5E-32 285.7 31.9 459 200-703 175-786 (821)
69 KOG0740 AAA+-type ATPase [Post 100.0 1.1E-28 2.3E-33 265.8 17.0 261 197-464 146-409 (428)
70 PLN00020 ribulose bisphosphate 100.0 1E-27 2.2E-32 251.4 21.0 219 200-423 111-352 (413)
71 PRK10733 hflB ATP-dependent me 100.0 8.9E-28 1.9E-32 281.3 23.0 243 200-460 148-393 (644)
72 TIGR03346 chaperone_ClpB ATP-d 100.0 1.6E-26 3.5E-31 279.4 33.9 457 199-704 168-831 (852)
73 PRK10865 protein disaggregatio 100.0 2.7E-26 5.8E-31 276.1 34.6 454 199-703 173-833 (857)
74 CHL00206 ycf2 Ycf2; Provisiona 100.0 7.3E-28 1.6E-32 290.2 19.9 200 222-427 1614-1862(2281)
75 COG0542 clpA ATP-binding subun 100.0 2E-26 4.4E-31 264.1 28.0 455 200-702 166-758 (786)
76 KOG0744 AAA+-type ATPase [Post 99.9 3.2E-23 6.9E-28 210.0 11.1 188 475-664 140-343 (423)
77 CHL00181 cbbX CbbX; Provisiona 99.9 5.1E-22 1.1E-26 210.5 16.6 215 476-704 22-260 (287)
78 KOG0743 AAA+-type ATPase [Post 99.9 3.4E-22 7.3E-27 213.5 15.2 220 474-703 198-428 (457)
79 TIGR02881 spore_V_K stage V sp 99.9 2.9E-21 6.3E-26 203.5 16.5 214 476-703 5-243 (261)
80 TIGR02880 cbbX_cfxQ probable R 99.9 1.8E-21 3.9E-26 206.6 14.3 213 478-703 23-258 (284)
81 KOG0742 AAA+-type ATPase [Post 99.9 4.2E-21 9.2E-26 199.5 15.7 184 509-699 382-593 (630)
82 PF00004 AAA: ATPase family as 99.9 2.9E-21 6.3E-26 181.6 13.0 130 514-647 1-132 (132)
83 PF00004 AAA: ATPase family as 99.8 1.1E-18 2.4E-23 163.9 15.1 129 241-370 1-131 (132)
84 CHL00181 cbbX CbbX; Provisiona 99.8 2.7E-17 5.9E-22 174.4 20.2 213 203-425 22-257 (287)
85 PF05496 RuvB_N: Holliday junc 99.8 8.1E-18 1.8E-22 166.6 14.8 189 473-694 20-225 (233)
86 TIGR02880 cbbX_cfxQ probable R 99.7 3.5E-17 7.5E-22 173.9 17.9 210 205-424 23-255 (284)
87 TIGR02881 spore_V_K stage V sp 99.7 1.3E-16 2.9E-21 168.1 19.0 176 203-389 5-195 (261)
88 TIGR02639 ClpA ATP-dependent C 99.7 7.6E-17 1.6E-21 193.0 18.5 244 474-763 179-453 (731)
89 TIGR00763 lon ATP-dependent pr 99.7 4.1E-17 9E-22 196.2 16.0 164 477-661 320-505 (775)
90 COG2256 MGS1 ATPase related to 99.7 2.4E-16 5.2E-21 166.0 18.5 227 472-767 19-262 (436)
91 PRK00080 ruvB Holliday junctio 99.7 5.9E-16 1.3E-20 168.8 20.9 234 473-764 21-274 (328)
92 TIGR00635 ruvB Holliday juncti 99.7 7.9E-16 1.7E-20 166.5 20.8 230 475-762 2-251 (305)
93 COG2255 RuvB Holliday junction 99.7 1.8E-15 3.8E-20 152.3 19.0 196 473-701 22-234 (332)
94 KOG0743 AAA+-type ATPase [Post 99.7 5.3E-16 1.2E-20 166.3 16.1 179 201-387 198-385 (457)
95 KOG0744 AAA+-type ATPase [Post 99.7 9.2E-17 2E-21 163.4 9.5 173 211-385 149-340 (423)
96 PRK11034 clpA ATP-dependent Cl 99.7 7E-16 1.5E-20 182.1 17.0 199 475-698 184-409 (758)
97 KOG0742 AAA+-type ATPase [Post 99.7 1.1E-15 2.4E-20 159.4 15.7 174 238-416 384-586 (630)
98 PF05496 RuvB_N: Holliday junc 99.7 2.7E-15 5.8E-20 148.8 17.5 182 196-406 16-214 (233)
99 KOG2004 Mitochondrial ATP-depe 99.7 1.3E-15 2.8E-20 169.3 15.4 165 476-661 410-596 (906)
100 COG0466 Lon ATP-dependent Lon 99.6 2.4E-15 5.3E-20 168.4 16.5 207 476-712 322-555 (782)
101 KOG1051 Chaperone HSP104 and r 99.6 1E-13 2.2E-18 162.2 27.4 162 203-387 185-365 (898)
102 PRK05342 clpX ATP-dependent pr 99.6 1.6E-14 3.5E-19 159.8 17.2 223 478-702 72-382 (412)
103 PRK07003 DNA polymerase III su 99.6 3.8E-14 8.3E-19 162.3 19.8 187 473-697 12-227 (830)
104 PRK12323 DNA polymerase III su 99.6 1.6E-14 3.4E-19 163.5 16.4 187 472-696 11-231 (700)
105 PRK13342 recombination factor 99.6 6.1E-14 1.3E-18 157.5 19.7 180 473-695 8-201 (413)
106 PRK10865 protein disaggregatio 99.6 2E-14 4.3E-19 173.8 14.3 167 474-666 175-359 (857)
107 TIGR03345 VI_ClpV1 type VI sec 99.6 2.2E-14 4.7E-19 172.9 14.7 185 473-683 183-390 (852)
108 TIGR00390 hslU ATP-dependent p 99.6 2.9E-14 6.4E-19 154.1 13.9 177 478-658 13-343 (441)
109 TIGR00763 lon ATP-dependent pr 99.6 7.4E-14 1.6E-18 168.2 18.9 164 204-385 320-505 (775)
110 PRK10787 DNA-binding ATP-depen 99.6 6.6E-14 1.4E-18 166.9 18.0 204 477-702 322-559 (784)
111 PRK05201 hslU ATP-dependent pr 99.6 2E-14 4.2E-19 155.6 12.2 177 478-658 16-345 (443)
112 TIGR02902 spore_lonB ATP-depen 99.6 5.3E-14 1.1E-18 161.9 16.6 210 473-742 61-331 (531)
113 PRK14956 DNA polymerase III su 99.6 5.8E-14 1.3E-18 155.6 16.0 185 473-695 14-227 (484)
114 PRK14962 DNA polymerase III su 99.5 2.5E-13 5.3E-18 153.3 21.2 184 472-693 9-221 (472)
115 TIGR00382 clpX endopeptidase C 99.5 7.2E-14 1.6E-18 153.7 16.3 223 478-702 78-388 (413)
116 PRK07940 DNA polymerase III su 99.5 5.4E-14 1.2E-18 155.0 15.0 185 475-690 3-214 (394)
117 COG2255 RuvB Holliday junction 99.5 1.2E-13 2.6E-18 139.2 16.0 182 197-407 19-217 (332)
118 COG2256 MGS1 ATPase related to 99.5 1.4E-13 3E-18 145.4 16.4 175 196-408 16-207 (436)
119 PRK00080 ruvB Holliday junctio 99.5 3.3E-13 7.3E-18 147.2 20.1 192 197-418 18-226 (328)
120 PRK14960 DNA polymerase III su 99.5 2E-13 4.4E-18 155.0 18.6 186 473-696 11-225 (702)
121 TIGR02928 orc1/cdc6 family rep 99.5 2.3E-13 5E-18 151.2 18.7 202 477-701 15-257 (365)
122 PRK14949 DNA polymerase III su 99.5 2.8E-13 6.1E-18 158.2 19.7 185 473-695 12-225 (944)
123 PRK14961 DNA polymerase III su 99.5 4.4E-13 9.5E-18 147.9 20.2 186 473-696 12-226 (363)
124 PRK00149 dnaA chromosomal repl 99.5 1.3E-13 2.8E-18 156.7 16.2 173 512-701 149-333 (450)
125 TIGR00635 ruvB Holliday juncti 99.5 5.4E-13 1.2E-17 144.4 19.7 188 202-419 2-206 (305)
126 TIGR00362 DnaA chromosomal rep 99.5 1.7E-13 3.7E-18 153.9 16.3 174 511-701 136-321 (405)
127 CHL00095 clpC Clp protease ATP 99.5 6.7E-14 1.5E-18 169.6 13.6 185 474-684 176-382 (821)
128 PRK00411 cdc6 cell division co 99.5 4E-13 8.6E-18 150.9 18.6 203 477-701 30-265 (394)
129 TIGR03346 chaperone_ClpB ATP-d 99.5 1.2E-13 2.6E-18 167.9 15.1 185 473-683 169-376 (852)
130 PRK04195 replication factor C 99.5 2.4E-13 5.2E-18 155.7 16.7 191 473-698 10-207 (482)
131 PRK07994 DNA polymerase III su 99.5 6.5E-13 1.4E-17 153.3 19.9 186 473-696 12-226 (647)
132 PRK06645 DNA polymerase III su 99.5 9.3E-13 2E-17 149.1 19.3 189 472-698 16-237 (507)
133 PRK14964 DNA polymerase III su 99.5 1E-12 2.2E-17 147.6 18.0 188 473-698 9-225 (491)
134 PRK14958 DNA polymerase III su 99.5 8E-13 1.7E-17 150.7 17.0 187 473-697 12-227 (509)
135 PRK13341 recombination factor 99.5 6.7E-13 1.4E-17 156.4 16.8 181 473-695 24-222 (725)
136 PRK08691 DNA polymerase III su 99.5 1.3E-12 2.8E-17 150.0 18.7 188 472-697 11-227 (709)
137 PRK12422 chromosomal replicati 99.5 8.7E-13 1.9E-17 148.1 16.8 168 512-695 142-318 (445)
138 PRK07764 DNA polymerase III su 99.5 1.3E-12 2.8E-17 155.7 19.0 185 473-695 11-226 (824)
139 PRK14963 DNA polymerase III su 99.5 1.2E-12 2.6E-17 148.9 17.8 186 472-695 9-222 (504)
140 PRK05563 DNA polymerase III su 99.5 1.7E-12 3.8E-17 150.0 19.1 187 473-697 12-227 (559)
141 PTZ00112 origin recognition co 99.5 1.1E-12 2.3E-17 150.7 16.6 168 513-696 783-987 (1164)
142 PRK14088 dnaA chromosomal repl 99.5 9E-13 2E-17 148.4 15.7 173 512-701 131-316 (440)
143 PRK14952 DNA polymerase III su 99.4 2.3E-12 5E-17 148.1 19.2 187 473-697 9-226 (584)
144 PRK14951 DNA polymerase III su 99.4 2.8E-12 6.2E-17 147.8 19.9 187 473-697 12-232 (618)
145 PRK14086 dnaA chromosomal repl 99.4 1.4E-12 3.1E-17 148.4 16.9 173 513-701 316-499 (617)
146 KOG2028 ATPase related to the 99.4 1.9E-12 4.2E-17 133.8 16.1 208 512-769 163-394 (554)
147 PRK14959 DNA polymerase III su 99.4 1.5E-12 3.2E-17 149.0 16.6 184 472-693 11-223 (624)
148 PRK12402 replication factor C 99.4 2E-12 4.3E-17 142.0 17.2 190 473-698 11-231 (337)
149 PLN03025 replication factor C 99.4 1.9E-12 4.2E-17 140.6 16.1 181 473-695 9-202 (319)
150 PRK14957 DNA polymerase III su 99.4 2.7E-12 5.9E-17 146.2 18.0 187 473-697 12-227 (546)
151 TIGR02397 dnaX_nterm DNA polym 99.4 5.3E-12 1.2E-16 139.7 19.8 188 472-697 9-225 (355)
152 KOG2004 Mitochondrial ATP-depe 99.4 1.4E-12 3.1E-17 145.4 14.3 163 205-385 412-596 (906)
153 PRK05896 DNA polymerase III su 99.4 4.6E-12 1E-16 144.2 18.2 187 473-697 12-227 (605)
154 PRK14969 DNA polymerase III su 99.4 3.6E-12 7.8E-17 146.3 17.3 187 473-697 12-227 (527)
155 PRK07133 DNA polymerase III su 99.4 9.6E-12 2.1E-16 144.4 20.8 187 472-696 13-225 (725)
156 PRK06893 DNA replication initi 99.4 3.2E-12 6.9E-17 132.0 14.3 159 512-694 40-207 (229)
157 PHA02544 44 clamp loader, smal 99.4 3E-12 6.4E-17 139.3 14.7 156 473-661 17-173 (316)
158 TIGR03420 DnaA_homol_Hda DnaA 99.4 6.4E-12 1.4E-16 129.7 16.2 167 510-701 37-212 (226)
159 TIGR02903 spore_lon_C ATP-depe 99.4 2.8E-11 6.2E-16 141.5 23.3 223 473-744 150-431 (615)
160 COG0466 Lon ATP-dependent Lon 99.4 1.9E-12 4.1E-17 145.5 12.6 163 205-385 324-508 (782)
161 PRK14965 DNA polymerase III su 99.4 7E-12 1.5E-16 145.7 17.7 187 473-697 12-227 (576)
162 KOG0989 Replication factor C, 99.4 3.2E-12 6.9E-17 130.4 12.5 183 472-693 31-230 (346)
163 PRK06305 DNA polymerase III su 99.4 2.2E-11 4.9E-16 137.4 20.8 184 473-694 13-226 (451)
164 PRK14953 DNA polymerase III su 99.4 1.4E-11 3.1E-16 139.8 18.5 188 472-697 11-227 (486)
165 PRK04195 replication factor C 99.4 1.6E-11 3.4E-16 140.8 19.0 182 196-406 6-195 (482)
166 PRK14956 DNA polymerase III su 99.4 2.1E-11 4.6E-16 135.4 19.3 178 196-407 10-216 (484)
167 PRK07003 DNA polymerase III su 99.4 1.8E-11 3.8E-16 140.7 18.9 187 196-417 8-223 (830)
168 PRK14962 DNA polymerase III su 99.4 2E-11 4.2E-16 138.0 18.7 177 196-406 6-211 (472)
169 PF05673 DUF815: Protein of un 99.4 2.5E-11 5.4E-16 122.4 17.3 191 471-692 21-243 (249)
170 PRK12323 DNA polymerase III su 99.4 1.2E-11 2.5E-16 140.6 16.4 187 196-417 8-228 (700)
171 PRK06647 DNA polymerase III su 99.4 1.9E-11 4.1E-16 140.8 18.5 188 472-697 11-227 (563)
172 PRK08451 DNA polymerase III su 99.3 1.8E-11 3.9E-16 138.7 16.2 188 473-698 10-226 (535)
173 PRK08084 DNA replication initi 99.3 3.5E-11 7.7E-16 124.6 17.2 158 512-695 46-214 (235)
174 PRK08903 DnaA regulatory inact 99.3 3.6E-11 7.9E-16 124.2 17.2 175 510-741 41-224 (227)
175 PRK07940 DNA polymerase III su 99.3 3.4E-11 7.3E-16 133.0 17.9 185 202-414 3-214 (394)
176 PF05673 DUF815: Protein of un 99.3 5.3E-11 1.2E-15 120.0 17.6 167 197-391 20-213 (249)
177 PRK13342 recombination factor 99.3 4.2E-11 9.1E-16 134.7 18.9 172 196-406 4-189 (413)
178 PRK14087 dnaA chromosomal repl 99.3 2E-11 4.4E-16 137.6 15.7 173 512-701 142-330 (450)
179 COG1474 CDC6 Cdc6-related prot 99.3 3.8E-11 8.2E-16 131.3 17.1 178 510-702 41-249 (366)
180 PRK14954 DNA polymerase III su 99.3 8E-11 1.7E-15 136.4 20.4 189 472-698 11-236 (620)
181 COG0488 Uup ATPase components 99.3 2.6E-11 5.7E-16 137.9 16.1 63 283-359 157-219 (530)
182 PF02359 CDC48_N: Cell divisio 99.3 1E-11 2.2E-16 107.3 9.7 80 26-107 1-85 (87)
183 PRK14970 DNA polymerase III su 99.3 3.3E-11 7.2E-16 133.8 16.5 187 472-696 12-215 (367)
184 PRK14955 DNA polymerase III su 99.3 4.4E-11 9.5E-16 133.6 17.5 189 472-698 11-236 (397)
185 PRK14948 DNA polymerase III su 99.3 9.6E-11 2.1E-15 136.6 20.6 184 472-693 11-225 (620)
186 PRK09111 DNA polymerase III su 99.3 6.8E-11 1.5E-15 136.9 19.0 193 473-697 20-240 (598)
187 PLN03025 replication factor C 99.3 6.2E-11 1.3E-15 128.8 17.6 175 196-405 5-192 (319)
188 PRK05642 DNA replication initi 99.3 5.9E-11 1.3E-15 122.8 16.6 162 512-699 46-217 (234)
189 TIGR02902 spore_lonB ATP-depen 99.3 5.7E-11 1.2E-15 136.9 17.6 200 196-424 57-314 (531)
190 COG0593 DnaA ATPase involved i 99.3 4.8E-11 1E-15 129.9 15.9 176 511-703 113-299 (408)
191 PRK10787 DNA-binding ATP-depen 99.3 2.6E-10 5.7E-15 136.3 23.7 162 205-385 323-506 (784)
192 TIGR02928 orc1/cdc6 family rep 99.3 1.8E-10 3.8E-15 128.1 20.6 201 204-424 15-256 (365)
193 PRK14949 DNA polymerase III su 99.3 1.3E-10 2.7E-15 136.3 19.9 192 196-416 8-222 (944)
194 PRK14960 DNA polymerase III su 99.3 9.9E-11 2.1E-15 133.4 18.6 188 196-418 7-223 (702)
195 PRK14961 DNA polymerase III su 99.3 1E-10 2.2E-15 129.2 18.4 193 196-417 8-223 (363)
196 TIGR02640 gas_vesic_GvpN gas v 99.3 2.5E-11 5.5E-16 127.8 12.6 132 511-661 21-198 (262)
197 PRK14950 DNA polymerase III su 99.3 1E-10 2.2E-15 136.8 18.7 185 473-695 12-226 (585)
198 PRK00411 cdc6 cell division co 99.3 1.4E-10 2.9E-15 130.4 19.1 202 203-423 29-263 (394)
199 COG1219 ClpX ATP-dependent pro 99.3 1.8E-11 3.8E-16 125.2 10.6 132 477-611 61-203 (408)
200 PRK07994 DNA polymerase III su 99.3 1.6E-10 3.4E-15 133.8 19.6 187 196-417 8-223 (647)
201 PRK08727 hypothetical protein; 99.3 1.2E-10 2.7E-15 120.4 16.2 158 512-695 42-209 (233)
202 PF00308 Bac_DnaA: Bacterial d 99.3 3.6E-11 7.7E-16 123.0 11.9 170 512-698 35-216 (219)
203 PRK00440 rfc replication facto 99.2 1.1E-10 2.5E-15 127.0 16.2 184 473-695 13-208 (319)
204 PRK05342 clpX ATP-dependent pr 99.2 3.9E-10 8.4E-15 125.2 20.1 216 205-424 72-380 (412)
205 TIGR01650 PD_CobS cobaltochela 99.2 5.4E-11 1.2E-15 126.2 12.7 140 507-663 60-235 (327)
206 PRK14971 DNA polymerase III su 99.2 4.2E-10 9.1E-15 131.2 21.2 187 473-697 13-229 (614)
207 PRK06645 DNA polymerase III su 99.2 3.2E-10 6.9E-15 128.7 19.6 195 196-419 13-234 (507)
208 PHA02544 44 clamp loader, smal 99.2 1.3E-10 2.8E-15 126.4 15.9 159 196-384 13-172 (316)
209 KOG2028 ATPase related to the 99.2 2.3E-10 4.9E-15 118.8 16.3 191 196-424 130-347 (554)
210 PRK05201 hslU ATP-dependent pr 99.2 4.8E-11 1E-15 129.5 12.0 176 205-382 16-345 (443)
211 TIGR00390 hslU ATP-dependent p 99.2 5.9E-11 1.3E-15 128.8 12.5 176 205-382 13-343 (441)
212 TIGR03420 DnaA_homol_Hda DnaA 99.2 4.3E-10 9.4E-15 116.1 18.7 186 201-419 12-206 (226)
213 PRK14958 DNA polymerase III su 99.2 1.8E-10 3.9E-15 131.6 17.2 188 196-418 8-224 (509)
214 PRK12402 replication factor C 99.2 5.9E-10 1.3E-14 122.4 20.6 181 196-405 7-218 (337)
215 PRK14964 DNA polymerase III su 99.2 3.1E-10 6.7E-15 127.7 18.5 188 197-419 6-222 (491)
216 PRK06620 hypothetical protein; 99.2 1.2E-10 2.6E-15 118.6 13.9 143 512-694 45-193 (214)
217 PRK14963 DNA polymerase III su 99.2 5.5E-10 1.2E-14 127.3 19.9 178 196-407 6-211 (504)
218 PRK08691 DNA polymerase III su 99.2 3.5E-10 7.7E-15 130.2 18.1 195 196-419 8-225 (709)
219 PTZ00112 origin recognition co 99.2 4.2E-10 9.1E-15 129.8 18.5 181 204-404 755-969 (1164)
220 cd00009 AAA The AAA+ (ATPases 99.2 1.4E-10 3E-15 110.2 12.6 122 510-647 18-151 (151)
221 PRK00149 dnaA chromosomal repl 99.2 2.1E-10 4.6E-15 130.6 16.2 156 239-406 149-315 (450)
222 KOG0989 Replication factor C, 99.2 2.4E-10 5.2E-15 116.9 14.6 179 196-406 28-223 (346)
223 PRK14952 DNA polymerase III su 99.2 5.7E-10 1.2E-14 128.5 19.7 187 196-417 5-222 (584)
224 PRK07764 DNA polymerase III su 99.2 4E-10 8.7E-15 134.6 19.0 176 196-405 7-213 (824)
225 PRK13407 bchI magnesium chelat 99.2 1E-10 2.2E-15 126.0 12.7 160 473-661 4-216 (334)
226 COG1224 TIP49 DNA helicase TIP 99.2 6.3E-10 1.4E-14 115.6 17.7 112 571-702 292-416 (450)
227 TIGR00362 DnaA chromosomal rep 99.2 2.3E-10 5.1E-15 128.6 16.0 167 238-417 136-313 (405)
228 PRK14959 DNA polymerase III su 99.2 3.5E-10 7.5E-15 129.8 17.2 179 196-408 8-215 (624)
229 COG2812 DnaX DNA polymerase II 99.2 2E-10 4.4E-15 128.6 14.2 194 473-698 12-228 (515)
230 PRK06893 DNA replication initi 99.2 3.9E-10 8.4E-15 116.5 15.3 150 239-408 40-198 (229)
231 PRK14957 DNA polymerase III su 99.2 9.9E-10 2.1E-14 125.4 19.7 186 196-416 8-222 (546)
232 PRK05896 DNA polymerase III su 99.2 6.6E-10 1.4E-14 126.8 18.0 177 196-406 8-213 (605)
233 PRK14088 dnaA chromosomal repl 99.2 2.9E-10 6.2E-15 128.3 14.6 157 239-406 131-298 (440)
234 PRK14951 DNA polymerase III su 99.2 8.6E-10 1.9E-14 127.5 18.4 193 196-417 8-228 (618)
235 PRK05563 DNA polymerase III su 99.2 1E-09 2.2E-14 127.2 19.1 188 196-418 8-224 (559)
236 COG1123 ATPase components of v 99.2 7.2E-11 1.6E-15 131.9 9.1 112 232-353 29-218 (539)
237 PRK08084 DNA replication initi 99.1 1.7E-09 3.7E-14 112.0 18.5 176 200-408 18-204 (235)
238 TIGR00382 clpX endopeptidase C 99.1 1.3E-09 2.7E-14 120.4 17.8 217 205-423 78-385 (413)
239 PRK14969 DNA polymerase III su 99.1 6.9E-10 1.5E-14 127.6 16.4 188 196-418 8-224 (527)
240 COG5271 MDN1 AAA ATPase contai 99.1 1.9E-09 4.2E-14 127.9 19.9 133 237-385 887-1047(4600)
241 PRK13341 recombination factor 99.1 1.3E-09 2.7E-14 128.9 18.9 173 196-406 20-210 (725)
242 cd00009 AAA The AAA+ (ATPases 99.1 1.1E-09 2.3E-14 104.0 15.0 137 208-370 2-150 (151)
243 PRK07133 DNA polymerase III su 99.1 1.7E-09 3.8E-14 125.8 19.4 184 196-407 10-213 (725)
244 PF00308 Bac_DnaA: Bacterial d 99.1 2.5E-09 5.5E-14 109.4 18.6 157 239-405 35-200 (219)
245 PRK07471 DNA polymerase III su 99.1 3.1E-09 6.6E-14 116.6 20.3 184 473-691 15-239 (365)
246 TIGR02397 dnaX_nterm DNA polym 99.1 1.5E-09 3.2E-14 120.2 17.8 176 196-405 6-210 (355)
247 TIGR00678 holB DNA polymerase 99.1 7.1E-10 1.5E-14 111.1 13.7 144 509-681 12-183 (188)
248 TIGR02640 gas_vesic_GvpN gas v 99.1 1.7E-09 3.7E-14 114.0 17.2 133 237-385 20-198 (262)
249 CHL00081 chlI Mg-protoporyphyr 99.1 6.4E-10 1.4E-14 120.1 14.2 161 472-661 12-232 (350)
250 PRK14086 dnaA chromosomal repl 99.1 1E-09 2.2E-14 125.4 16.4 158 239-406 315-481 (617)
251 TIGR02030 BchI-ChlI magnesium 99.1 5.1E-10 1.1E-14 121.0 13.2 155 475-661 2-219 (337)
252 PRK09112 DNA polymerase III su 99.1 1.5E-09 3.2E-14 118.4 16.9 190 473-695 19-245 (351)
253 KOG0745 Putative ATP-dependent 99.1 1.9E-09 4.1E-14 114.5 16.4 100 512-611 227-332 (564)
254 COG0714 MoxR-like ATPases [Gen 99.1 5.3E-10 1.1E-14 122.1 12.9 132 510-661 42-203 (329)
255 PRK05564 DNA polymerase III su 99.1 1.1E-09 2.4E-14 118.7 15.4 169 475-681 2-182 (313)
256 PHA02244 ATPase-like protein 99.1 1.2E-09 2.7E-14 117.0 15.0 127 511-657 119-269 (383)
257 PRK12422 chromosomal replicati 99.1 1.4E-09 3E-14 122.4 16.2 157 239-407 142-307 (445)
258 PRK14953 DNA polymerase III su 99.1 3.1E-09 6.6E-14 120.9 18.9 182 196-405 8-212 (486)
259 PRK08727 hypothetical protein; 99.1 4.2E-09 9.1E-14 109.0 18.1 147 238-406 41-197 (233)
260 KOG1969 DNA replication checkp 99.1 2.2E-09 4.8E-14 120.8 16.8 173 509-702 324-519 (877)
261 PRK14965 DNA polymerase III su 99.1 2E-09 4.4E-14 125.3 17.4 177 196-406 8-213 (576)
262 PRK14970 DNA polymerase III su 99.1 3.5E-09 7.5E-14 117.7 18.6 182 196-405 9-201 (367)
263 PRK09087 hypothetical protein; 99.1 6.4E-10 1.4E-14 114.2 11.7 172 512-743 45-222 (226)
264 PRK06305 DNA polymerase III su 99.1 4E-09 8.6E-14 119.2 19.2 176 196-405 9-214 (451)
265 COG1220 HslU ATP-dependent pro 99.1 2.8E-09 6.1E-14 110.0 16.1 83 572-658 252-346 (444)
266 PRK08903 DnaA regulatory inact 99.1 5.3E-09 1.1E-13 108.1 18.6 169 200-405 14-191 (227)
267 PRK00440 rfc replication facto 99.1 3.7E-09 8E-14 115.1 18.4 176 196-406 9-196 (319)
268 PRK06647 DNA polymerase III su 99.1 3.8E-09 8.1E-14 122.0 19.0 186 196-416 8-222 (563)
269 PF07724 AAA_2: AAA domain (Cd 99.1 2.6E-10 5.7E-15 111.7 7.7 113 510-627 2-131 (171)
270 PF07728 AAA_5: AAA domain (dy 99.1 7.5E-11 1.6E-15 112.0 3.6 109 513-639 1-139 (139)
271 COG0542 clpA ATP-binding subun 99.1 9.2E-10 2E-14 127.9 12.9 170 473-667 166-352 (786)
272 TIGR02442 Cob-chelat-sub cobal 99.0 1.6E-09 3.4E-14 127.8 14.3 155 475-661 2-214 (633)
273 smart00382 AAA ATPases associa 99.0 1E-09 2.2E-14 103.2 10.4 127 511-648 2-147 (148)
274 TIGR02903 spore_lon_C ATP-depe 99.0 1.3E-08 2.9E-13 119.3 21.7 166 197-389 147-370 (615)
275 PRK08451 DNA polymerase III su 99.0 7.8E-09 1.7E-13 117.5 19.1 189 196-419 6-223 (535)
276 COG1474 CDC6 Cdc6-related prot 99.0 1.2E-08 2.7E-13 111.6 19.7 201 205-426 18-249 (366)
277 PRK11331 5-methylcytosine-spec 99.0 1.2E-09 2.7E-14 120.1 11.7 121 511-647 194-357 (459)
278 PRK09111 DNA polymerase III su 99.0 9.5E-09 2.1E-13 119.2 19.5 193 196-417 16-236 (598)
279 PRK14948 DNA polymerase III su 99.0 9.8E-09 2.1E-13 119.9 19.6 184 196-407 8-216 (620)
280 PRK05642 DNA replication initi 99.0 9.3E-09 2E-13 106.5 16.9 150 238-406 45-201 (234)
281 COG2607 Predicted ATPase (AAA+ 99.0 2.3E-08 5E-13 99.1 18.5 168 197-392 53-246 (287)
282 COG2607 Predicted ATPase (AAA+ 99.0 8.6E-09 1.9E-13 102.1 15.4 170 469-669 52-247 (287)
283 PRK14954 DNA polymerase III su 99.0 1.2E-08 2.6E-13 118.5 19.4 185 196-408 8-223 (620)
284 PRK14955 DNA polymerase III su 99.0 4.7E-09 1E-13 117.3 15.4 183 196-406 8-221 (397)
285 PRK07399 DNA polymerase III su 99.0 1.9E-09 4.2E-14 115.9 11.8 183 475-692 2-223 (314)
286 TIGR00764 lon_rel lon-related 99.0 3.9E-09 8.4E-14 123.3 14.5 55 469-538 10-64 (608)
287 COG0470 HolB ATPase involved i 99.0 3.2E-09 6.9E-14 115.9 12.7 127 511-658 24-178 (325)
288 PRK14087 dnaA chromosomal repl 99.0 8.2E-09 1.8E-13 116.7 16.2 170 239-419 142-324 (450)
289 TIGR01650 PD_CobS cobaltochela 99.0 2.8E-09 6.1E-14 113.2 11.4 137 236-386 62-234 (327)
290 PRK05707 DNA polymerase III su 99.0 5.8E-09 1.3E-13 112.8 14.1 148 509-681 20-195 (328)
291 TIGR03015 pepcterm_ATPase puta 99.0 5.5E-09 1.2E-13 110.9 13.7 190 513-744 45-267 (269)
292 KOG0927 Predicted transporter 99.0 2.3E-08 5.1E-13 109.6 18.3 30 233-262 96-125 (614)
293 COG5271 MDN1 AAA ATPase contai 99.0 1.4E-08 3.1E-13 120.8 17.7 136 508-661 1540-1703(4600)
294 PRK04132 replication factor C 99.0 9.9E-09 2.2E-13 121.9 16.7 155 514-694 567-735 (846)
295 PRK14950 DNA polymerase III su 99.0 1.8E-08 4E-13 117.9 18.7 182 196-405 8-213 (585)
296 PRK10636 putative ABC transpor 98.9 2.5E-09 5.5E-14 126.7 10.3 32 232-263 21-52 (638)
297 smart00382 AAA ATPases associa 98.9 5.2E-09 1.1E-13 98.4 10.1 128 238-372 2-147 (148)
298 PRK08058 DNA polymerase III su 98.9 5.2E-09 1.1E-13 113.9 11.1 149 475-659 3-180 (329)
299 PHA02244 ATPase-like protein 98.9 4.6E-08 1E-12 105.1 17.8 123 237-375 118-264 (383)
300 PRK06620 hypothetical protein; 98.9 2.6E-08 5.7E-13 101.4 15.0 136 239-407 45-183 (214)
301 PF01078 Mg_chelatase: Magnesi 98.9 1.2E-09 2.6E-14 108.2 4.8 139 476-651 2-205 (206)
302 PF06068 TIP49: TIP49 C-termin 98.9 1.4E-08 2.9E-13 107.9 12.2 66 476-549 23-90 (398)
303 PF07728 AAA_5: AAA domain (dy 98.9 1.5E-09 3.3E-14 103.0 4.6 109 240-363 1-139 (139)
304 PRK13407 bchI magnesium chelat 98.9 7.9E-09 1.7E-13 111.5 10.3 159 199-384 3-215 (334)
305 TIGR00368 Mg chelatase-related 98.9 3.5E-08 7.5E-13 112.3 15.9 144 474-651 189-394 (499)
306 COG2812 DnaX DNA polymerase II 98.9 1.5E-08 3.3E-13 113.7 12.7 195 197-420 9-226 (515)
307 PRK14971 DNA polymerase III su 98.9 7.9E-08 1.7E-12 112.4 19.1 176 196-405 9-214 (614)
308 PRK13549 xylose transporter AT 98.9 7.8E-09 1.7E-13 119.8 10.4 32 232-263 25-56 (506)
309 PF07726 AAA_3: ATPase family 98.9 1.2E-09 2.7E-14 99.2 2.8 105 513-640 1-130 (131)
310 KOG1969 DNA replication checkp 98.8 5.2E-08 1.1E-12 110.0 16.0 199 197-410 264-507 (877)
311 PRK09112 DNA polymerase III su 98.8 1.5E-07 3.3E-12 102.8 18.7 183 198-409 17-236 (351)
312 PRK06964 DNA polymerase III su 98.8 1.9E-08 4.1E-13 108.8 11.4 133 509-660 19-203 (342)
313 PRK11147 ABC transporter ATPas 98.8 9.6E-09 2.1E-13 122.1 9.9 32 232-263 23-54 (635)
314 KOG1514 Origin recognition com 98.8 9.3E-08 2E-12 107.9 16.9 207 513-750 424-662 (767)
315 smart00350 MCM minichromosome 98.8 4E-08 8.7E-13 113.2 14.6 163 479-662 205-401 (509)
316 COG4172 ABC-type uncharacteriz 98.8 1.6E-07 3.5E-12 99.6 17.6 124 508-689 310-434 (534)
317 COG0593 DnaA ATPase involved i 98.8 8.8E-08 1.9E-12 104.6 16.3 156 238-405 113-278 (408)
318 PRK13531 regulatory ATPase Rav 98.8 1.6E-08 3.5E-13 112.3 10.1 135 510-660 38-193 (498)
319 PRK09087 hypothetical protein; 98.8 5.2E-08 1.1E-12 100.1 13.2 140 238-405 44-187 (226)
320 COG0714 MoxR-like ATPases [Gen 98.8 2.3E-08 4.9E-13 109.3 11.1 128 237-381 42-199 (329)
321 TIGR03269 met_CoM_red_A2 methy 98.8 1.9E-08 4.2E-13 117.0 11.1 31 232-262 20-50 (520)
322 PRK11331 5-methylcytosine-spec 98.8 7E-08 1.5E-12 106.5 14.5 141 203-371 174-357 (459)
323 PF13177 DNA_pol3_delta2: DNA 98.8 2.2E-08 4.8E-13 97.5 9.5 134 481-648 1-161 (162)
324 PRK09700 D-allose transporter 98.8 1.3E-08 2.8E-13 118.1 8.9 32 232-263 25-56 (510)
325 TIGR02031 BchD-ChlD magnesium 98.8 7.6E-08 1.7E-12 112.4 15.2 135 512-662 17-175 (589)
326 PF07724 AAA_2: AAA domain (Cd 98.8 2.5E-08 5.4E-13 97.7 9.3 112 237-350 2-130 (171)
327 PRK15439 autoinducer 2 ABC tra 98.8 1.7E-08 3.8E-13 116.9 9.2 32 232-263 31-62 (510)
328 PRK15064 ABC transporter ATP-b 98.8 2.6E-08 5.6E-13 116.2 10.6 32 232-263 21-52 (530)
329 PRK10982 galactose/methyl gala 98.8 2.1E-08 4.6E-13 115.8 9.7 32 232-263 18-49 (491)
330 PRK10762 D-ribose transporter 98.8 1.9E-08 4.1E-13 116.5 9.2 32 232-263 24-55 (501)
331 TIGR00602 rad24 checkpoint pro 98.7 1.1E-07 2.3E-12 110.6 15.1 202 472-700 79-330 (637)
332 PRK10938 putative molybdenum t 98.7 2E-08 4.3E-13 116.1 9.2 32 232-263 23-54 (490)
333 PRK15134 microcin C ABC transp 98.7 2.3E-08 5E-13 116.6 9.8 32 232-263 29-60 (529)
334 TIGR00602 rad24 checkpoint pro 98.7 1.5E-07 3.3E-12 109.2 16.1 191 196-405 76-315 (637)
335 PRK06871 DNA polymerase III su 98.7 1.2E-07 2.5E-12 102.0 14.1 129 509-660 22-178 (325)
336 TIGR02030 BchI-ChlI magnesium 98.7 9.2E-08 2E-12 103.6 13.3 156 202-383 2-217 (337)
337 PLN03073 ABC transporter F fam 98.7 3.1E-08 6.8E-13 118.0 10.3 30 232-261 197-226 (718)
338 COG1224 TIP49 DNA helicase TIP 98.7 5E-07 1.1E-11 94.5 17.7 61 204-275 39-104 (450)
339 CHL00081 chlI Mg-protoporyphyr 98.7 8.9E-08 1.9E-12 103.6 12.5 160 199-384 12-231 (350)
340 KOG0991 Replication factor C, 98.7 9.2E-08 2E-12 94.1 11.1 136 196-359 19-162 (333)
341 TIGR02974 phageshock_pspF psp 98.7 9.3E-08 2E-12 103.9 12.4 169 511-698 22-233 (329)
342 smart00763 AAA_PrkA PrkA AAA d 98.7 1.2E-07 2.7E-12 101.9 13.1 161 478-663 52-329 (361)
343 TIGR00678 holB DNA polymerase 98.7 1.9E-07 4.2E-12 93.4 13.7 148 237-405 13-183 (188)
344 PRK05564 DNA polymerase III su 98.7 4.4E-07 9.6E-12 98.5 17.2 152 202-385 2-165 (313)
345 KOG0991 Replication factor C, 98.7 8.5E-08 1.8E-12 94.4 10.2 183 473-695 23-216 (333)
346 PRK07471 DNA polymerase III su 98.7 5.8E-07 1.3E-11 98.7 18.2 180 198-408 13-233 (365)
347 PRK07993 DNA polymerase III su 98.7 1.4E-07 3E-12 102.5 12.8 150 509-681 22-196 (334)
348 PRK08769 DNA polymerase III su 98.7 2.1E-07 4.4E-12 100.0 13.8 152 509-684 24-203 (319)
349 TIGR02633 xylG D-xylose ABC tr 98.7 6.5E-08 1.4E-12 112.1 10.5 32 232-263 21-52 (500)
350 PRK09862 putative ATP-dependen 98.7 2.7E-07 5.9E-12 104.6 14.7 123 510-651 209-391 (506)
351 PRK11608 pspF phage shock prot 98.7 1.1E-07 2.4E-12 103.5 11.2 193 476-698 5-240 (326)
352 PRK11819 putative ABC transpor 98.7 9.5E-08 2.1E-12 112.0 11.5 32 232-263 27-58 (556)
353 PF05621 TniB: Bacterial TniB 98.7 6.8E-07 1.5E-11 93.5 16.4 180 238-427 61-274 (302)
354 COG1221 PspF Transcriptional r 98.7 1.1E-07 2.3E-12 103.7 10.7 201 473-703 74-314 (403)
355 COG1220 HslU ATP-dependent pro 98.7 1.5E-07 3.3E-12 97.5 11.1 83 298-382 251-346 (444)
356 PRK08116 hypothetical protein; 98.7 6.3E-08 1.4E-12 102.1 8.6 130 511-659 114-258 (268)
357 PRK11288 araG L-arabinose tran 98.6 4.5E-08 9.7E-13 113.4 8.2 31 232-262 24-54 (501)
358 PRK13409 putative ATPase RIL; 98.6 6.1E-08 1.3E-12 113.4 9.0 30 235-264 96-125 (590)
359 KOG1942 DNA helicase, TBP-inte 98.6 5.1E-07 1.1E-11 91.7 14.1 40 510-549 63-104 (456)
360 PRK06090 DNA polymerase III su 98.6 2.8E-07 6E-12 98.9 12.8 129 509-659 23-178 (319)
361 KOG0062 ATPase component of AB 98.6 9.9E-07 2.1E-11 96.5 16.9 110 232-355 100-260 (582)
362 PRK10261 glutathione transport 98.6 1.2E-07 2.5E-12 112.5 10.8 46 502-547 339-388 (623)
363 PRK13531 regulatory ATPase Rav 98.6 2.4E-07 5.2E-12 103.1 12.2 134 236-383 37-192 (498)
364 TIGR01817 nifA Nif-specific re 98.6 1.8E-07 4E-12 109.0 11.9 198 473-700 192-430 (534)
365 COG1116 TauB ABC-type nitrate/ 98.6 1.7E-07 3.6E-12 94.8 9.8 32 232-263 23-54 (248)
366 TIGR03719 ABC_ABC_ChvD ATP-bin 98.6 1.7E-07 3.6E-12 109.8 11.4 32 232-263 25-56 (552)
367 KOG2227 Pre-initiation complex 98.6 1.8E-06 3.9E-11 93.6 17.9 236 479-745 152-417 (529)
368 COG0470 HolB ATPase involved i 98.6 6E-07 1.3E-11 98.0 14.8 148 205-381 2-177 (325)
369 PF07726 AAA_3: ATPase family 98.6 2.6E-08 5.7E-13 90.6 3.3 102 240-359 1-127 (131)
370 COG3829 RocR Transcriptional r 98.6 9.4E-08 2E-12 105.7 8.2 197 473-698 241-479 (560)
371 PRK11388 DNA-binding transcrip 98.6 2.6E-07 5.7E-12 110.1 12.6 195 474-698 322-554 (638)
372 PF05621 TniB: Bacterial TniB 98.6 1.1E-06 2.3E-11 92.0 15.3 198 480-702 37-273 (302)
373 PRK15424 propionate catabolism 98.6 2.1E-07 4.6E-12 106.6 11.1 197 474-698 216-465 (538)
374 COG1219 ClpX ATP-dependent pro 98.6 1.5E-07 3.3E-12 96.8 8.7 98 238-335 97-203 (408)
375 TIGR02655 circ_KaiC circadian 98.6 5.2E-06 1.1E-10 95.3 21.8 78 507-584 259-367 (484)
376 PRK07399 DNA polymerase III su 98.5 1.2E-06 2.7E-11 94.4 15.2 179 202-411 2-219 (314)
377 PRK05707 DNA polymerase III su 98.5 1.4E-06 3.1E-11 94.3 15.7 129 237-384 21-177 (328)
378 PF01078 Mg_chelatase: Magnesi 98.5 1.1E-07 2.3E-12 94.5 6.2 46 203-263 2-47 (206)
379 TIGR02329 propionate_PrpR prop 98.5 2.1E-07 4.6E-12 106.7 9.6 197 474-698 209-450 (526)
380 PRK04132 replication factor C 98.5 1.3E-06 2.8E-11 104.2 16.3 154 237-412 563-730 (846)
381 TIGR03015 pepcterm_ATPase puta 98.5 3E-06 6.4E-11 89.9 16.9 173 239-425 44-249 (269)
382 PRK05022 anaerobic nitric oxid 98.5 1.3E-06 2.8E-11 101.1 15.1 195 476-700 186-422 (509)
383 COG1120 FepC ABC-type cobalami 98.5 2.4E-07 5.3E-12 95.3 7.9 115 232-359 22-205 (258)
384 PRK08699 DNA polymerase III su 98.5 4.1E-07 8.9E-12 98.4 10.0 132 509-659 19-183 (325)
385 TIGR02442 Cob-chelat-sub cobal 98.5 5.9E-07 1.3E-11 106.2 11.9 156 202-383 2-212 (633)
386 PRK15429 formate hydrogenlyase 98.5 1.4E-06 3E-11 104.7 15.0 197 474-700 373-611 (686)
387 PRK08058 DNA polymerase III su 98.5 1.6E-06 3.4E-11 94.6 13.6 147 203-382 4-179 (329)
388 PRK10820 DNA-binding transcrip 98.5 1.5E-06 3.3E-11 100.5 14.0 197 473-699 200-438 (520)
389 PF00158 Sigma54_activat: Sigm 98.5 9E-07 2E-11 86.5 10.2 110 511-640 22-155 (168)
390 COG1121 ZnuC ABC-type Mn/Zn tr 98.4 4.7E-07 1E-11 92.8 8.0 115 232-357 24-206 (254)
391 KOG0745 Putative ATP-dependent 98.4 5.6E-07 1.2E-11 96.2 8.3 97 238-334 226-331 (564)
392 cd03216 ABC_Carb_Monos_I This 98.4 2.8E-07 6.1E-12 89.9 5.7 111 232-353 20-145 (163)
393 PRK08116 hypothetical protein; 98.4 1.3E-06 2.8E-11 92.2 10.9 100 238-349 114-220 (268)
394 PF03215 Rad17: Rad17 cell cyc 98.4 4.3E-06 9.3E-11 95.6 15.6 173 511-699 45-269 (519)
395 TIGR00764 lon_rel lon-related 98.4 4.4E-06 9.5E-11 97.9 16.1 53 198-265 12-64 (608)
396 PF13173 AAA_14: AAA domain 98.4 1.8E-06 3.8E-11 80.7 10.0 119 512-652 3-126 (128)
397 COG2204 AtoC Response regulato 98.4 2.1E-06 4.6E-11 95.4 12.2 199 475-703 139-379 (464)
398 PRK13765 ATP-dependent proteas 98.4 6E-06 1.3E-10 96.5 16.4 53 469-536 23-75 (637)
399 COG1124 DppF ABC-type dipeptid 98.4 1E-06 2.2E-11 88.4 8.4 111 232-352 27-204 (252)
400 PRK09183 transposase/IS protei 98.4 1.3E-06 2.9E-11 91.7 9.7 75 235-310 99-177 (259)
401 COG3604 FhlA Transcriptional r 98.4 1.2E-06 2.5E-11 95.9 9.4 195 473-698 219-456 (550)
402 KOG2680 DNA helicase TIP49, TB 98.4 8.7E-06 1.9E-10 83.2 14.6 98 618-743 319-429 (454)
403 PRK08181 transposase; Validate 98.4 1E-06 2.3E-11 92.4 8.3 71 511-583 106-180 (269)
404 PRK09302 circadian clock prote 98.4 2.9E-05 6.3E-10 90.1 21.2 78 507-584 269-377 (509)
405 COG3842 PotA ABC-type spermidi 98.4 6.3E-07 1.4E-11 96.4 6.8 110 232-351 25-198 (352)
406 PRK09183 transposase/IS protei 98.3 1.1E-06 2.4E-11 92.3 8.3 71 511-582 102-176 (259)
407 PF13401 AAA_22: AAA domain; P 98.3 2.6E-06 5.6E-11 79.6 10.1 98 238-347 4-125 (131)
408 KOG0066 eIF2-interacting prote 98.3 2E-06 4.3E-11 91.7 10.0 31 232-262 284-314 (807)
409 COG1126 GlnQ ABC-type polar am 98.3 1.6E-06 3.6E-11 85.3 8.7 108 232-350 22-196 (240)
410 COG1136 SalX ABC-type antimicr 98.3 1.9E-06 4.2E-11 87.0 9.4 121 232-369 25-215 (226)
411 COG1118 CysA ABC-type sulfate/ 98.3 1.3E-06 2.9E-11 90.1 8.2 110 232-351 22-199 (345)
412 cd03222 ABC_RNaseL_inhibitor T 98.3 9.7E-07 2.1E-11 87.0 7.0 109 233-351 20-133 (177)
413 PF01637 Arch_ATPase: Archaeal 98.3 1.8E-06 4E-11 89.0 9.4 165 511-688 20-232 (234)
414 PF13177 DNA_pol3_delta2: DNA 98.3 4.2E-06 9.1E-11 81.5 11.3 133 208-371 1-160 (162)
415 TIGR00368 Mg chelatase-related 98.3 4.9E-06 1.1E-10 94.9 13.6 48 201-263 189-236 (499)
416 PF00158 Sigma54_activat: Sigm 98.3 5.2E-06 1.1E-10 81.1 11.9 119 206-349 1-143 (168)
417 COG3839 MalK ABC-type sugar tr 98.3 1.1E-06 2.5E-11 94.0 7.7 109 232-350 23-194 (338)
418 PF13173 AAA_14: AAA domain 98.3 3.1E-06 6.8E-11 79.0 9.8 70 238-309 2-73 (128)
419 PRK08181 transposase; Validate 98.3 1.9E-06 4.1E-11 90.5 9.1 72 237-310 105-180 (269)
420 KOG2035 Replication factor C, 98.3 3.4E-05 7.3E-10 78.5 17.1 179 197-409 6-224 (351)
421 COG1122 CbiO ABC-type cobalt t 98.3 1.1E-07 2.4E-12 97.6 -0.6 97 232-328 24-123 (235)
422 COG1239 ChlI Mg-chelatase subu 98.3 8.8E-06 1.9E-10 88.1 13.6 159 200-384 13-231 (423)
423 COG4619 ABC-type uncharacteriz 98.3 1.9E-06 4.2E-11 81.1 7.5 33 232-264 23-55 (223)
424 COG0606 Predicted ATPase with 98.3 1.7E-07 3.8E-12 102.3 0.7 48 473-535 175-222 (490)
425 PRK06526 transposase; Provisio 98.3 1.1E-06 2.3E-11 91.9 6.4 71 511-583 98-172 (254)
426 PRK08939 primosomal protein Dn 98.3 1.5E-06 3.2E-11 93.3 7.6 101 510-626 155-261 (306)
427 COG2884 FtsE Predicted ATPase 98.3 3.8E-06 8.2E-11 80.9 9.3 109 232-351 22-198 (223)
428 PF01637 Arch_ATPase: Archaeal 98.3 7.5E-06 1.6E-10 84.4 12.5 181 207-407 2-228 (234)
429 PRK07952 DNA replication prote 98.3 2.5E-06 5.4E-11 88.3 8.7 100 512-626 100-205 (244)
430 COG1239 ChlI Mg-chelatase subu 98.3 7E-06 1.5E-10 88.8 12.1 161 473-663 13-234 (423)
431 PF01695 IstB_IS21: IstB-like 98.3 9.4E-07 2E-11 87.3 5.0 70 510-581 46-119 (178)
432 PRK12377 putative replication 98.3 5.2E-06 1.1E-10 86.1 10.7 70 238-309 101-175 (248)
433 PRK06526 transposase; Provisio 98.3 2.1E-06 4.6E-11 89.6 7.9 73 236-310 96-172 (254)
434 PRK06835 DNA replication prote 98.2 1.6E-06 3.5E-11 93.7 6.9 111 512-639 184-305 (329)
435 cd03214 ABC_Iron-Siderophores_ 98.2 1.7E-06 3.6E-11 86.0 6.5 112 232-353 19-161 (180)
436 PRK06871 DNA polymerase III su 98.2 2.2E-05 4.9E-10 84.5 15.5 127 238-384 24-178 (325)
437 PRK05917 DNA polymerase III su 98.2 6.8E-06 1.5E-10 86.6 11.2 118 509-648 17-154 (290)
438 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.2 2.2E-06 4.8E-11 81.7 6.8 77 232-308 20-99 (144)
439 PRK06964 DNA polymerase III su 98.2 9.4E-06 2E-10 88.1 12.3 132 236-383 19-202 (342)
440 COG1125 OpuBA ABC-type proline 98.2 1.7E-06 3.6E-11 87.0 5.9 42 232-273 21-64 (309)
441 PRK12377 putative replication 98.2 3.3E-06 7.1E-11 87.6 8.1 70 511-582 101-175 (248)
442 cd03228 ABCC_MRP_Like The MRP 98.2 3.1E-06 6.7E-11 83.3 7.5 110 232-353 22-158 (171)
443 COG1484 DnaC DNA replication p 98.2 9.5E-06 2.1E-10 84.8 11.4 72 237-309 104-179 (254)
444 smart00350 MCM minichromosome 98.2 6.3E-06 1.4E-10 95.2 11.1 132 237-385 235-400 (509)
445 COG3829 RocR Transcriptional r 98.2 3.5E-06 7.5E-11 93.6 8.4 155 200-382 241-427 (560)
446 PRK07952 DNA replication prote 98.2 8.6E-06 1.9E-10 84.3 10.7 69 239-309 100-174 (244)
447 PF13401 AAA_22: AAA domain; P 98.2 9.2E-06 2E-10 75.9 10.0 98 512-624 5-126 (131)
448 KOG0990 Replication factor C, 98.2 1.1E-05 2.3E-10 83.8 10.9 157 473-664 37-206 (360)
449 KOG2035 Replication factor C, 98.2 4.6E-05 1E-09 77.5 15.1 155 512-689 35-224 (351)
450 COG1484 DnaC DNA replication p 98.2 4.7E-06 1E-10 87.1 8.4 68 510-582 104-179 (254)
451 COG4608 AppF ABC-type oligopep 98.2 3.1E-06 6.6E-11 86.9 6.8 110 232-351 33-171 (268)
452 PRK07993 DNA polymerase III su 98.2 4.8E-05 1E-09 82.8 16.5 127 237-382 23-177 (334)
453 cd03247 ABCC_cytochrome_bd The 98.2 5.4E-06 1.2E-10 82.2 8.5 110 232-353 22-160 (178)
454 PTZ00111 DNA replication licen 98.2 5.4E-06 1.2E-10 98.5 9.7 161 479-659 452-655 (915)
455 PRK06835 DNA replication prote 98.2 9E-06 1.9E-10 88.0 10.7 99 238-348 183-287 (329)
456 PRK11608 pspF phage shock prot 98.2 7E-06 1.5E-10 89.4 10.0 149 203-379 5-184 (326)
457 TIGR02974 phageshock_pspF psp 98.2 8E-06 1.7E-10 88.9 10.4 147 207-381 2-179 (329)
458 PRK06921 hypothetical protein; 98.2 9.7E-06 2.1E-10 85.4 10.5 69 237-308 116-188 (266)
459 cd03230 ABC_DR_subfamily_A Thi 98.2 4.1E-06 8.8E-11 82.6 7.3 109 232-351 20-156 (173)
460 PRK06921 hypothetical protein; 98.2 3.3E-06 7.2E-11 88.9 6.9 69 510-581 116-188 (266)
461 cd03229 ABC_Class3 This class 98.2 2.6E-06 5.6E-11 84.5 5.7 112 232-353 20-164 (178)
462 cd03246 ABCC_Protease_Secretio 98.2 7.6E-06 1.6E-10 80.7 9.0 109 232-351 22-157 (173)
463 COG1245 Predicted ATPase, RNas 98.1 2.3E-05 5E-10 84.8 13.1 31 236-266 98-128 (591)
464 PRK05022 anaerobic nitric oxid 98.1 2.6E-05 5.7E-10 90.3 14.7 150 202-379 185-365 (509)
465 TIGR02031 BchD-ChlD magnesium 98.1 1.1E-05 2.5E-10 94.3 11.8 134 239-385 17-174 (589)
466 COG1221 PspF Transcriptional r 98.1 5.5E-06 1.2E-10 90.5 8.5 126 199-349 73-223 (403)
467 PF03215 Rad17: Rad17 cell cyc 98.1 4.7E-05 1E-09 87.2 16.4 65 196-268 11-75 (519)
468 cd00267 ABC_ATPase ABC (ATP-bi 98.1 3E-06 6.4E-11 82.2 5.8 78 232-309 19-110 (157)
469 PRK09862 putative ATP-dependen 98.1 9.7E-06 2.1E-10 92.1 10.2 125 235-375 207-391 (506)
470 cd01120 RecA-like_NTPases RecA 98.1 2.2E-05 4.7E-10 76.0 11.4 111 514-628 2-139 (165)
471 PRK07276 DNA polymerase III su 98.1 0.0002 4.3E-09 75.9 19.3 128 509-658 22-172 (290)
472 PRK15424 propionate catabolism 98.1 9E-06 1.9E-10 93.4 9.8 151 201-379 216-406 (538)
473 PRK08769 DNA polymerase III su 98.1 8.8E-05 1.9E-09 79.8 16.8 129 238-382 26-182 (319)
474 PF14532 Sigma54_activ_2: Sigm 98.1 2.5E-06 5.4E-11 80.8 4.4 106 511-647 21-137 (138)
475 COG1119 ModF ABC-type molybden 98.1 1.1E-05 2.4E-10 81.2 8.9 32 232-263 51-82 (257)
476 TIGR02915 PEP_resp_reg putativ 98.1 1.9E-05 4E-10 90.3 11.9 169 511-700 162-374 (445)
477 PRK08699 DNA polymerase III su 98.1 2E-05 4.3E-10 85.4 11.4 131 236-382 19-182 (325)
478 TIGR01817 nifA Nif-specific re 98.1 1.6E-05 3.5E-10 92.8 11.4 63 201-274 193-258 (534)
479 PRK15115 response regulator Gl 98.1 1.2E-05 2.7E-10 91.7 10.2 163 512-698 158-367 (444)
480 PRK06090 DNA polymerase III su 98.1 8E-05 1.7E-09 80.1 15.5 128 237-383 24-178 (319)
481 PRK11388 DNA-binding transcrip 98.1 5.6E-05 1.2E-09 90.3 15.9 152 200-379 321-500 (638)
482 PRK15429 formate hydrogenlyase 98.1 3.2E-05 6.9E-10 93.0 13.9 150 201-379 373-554 (686)
483 PF01695 IstB_IS21: IstB-like 98.1 4.4E-06 9.6E-11 82.6 5.4 71 236-308 45-119 (178)
484 PF05729 NACHT: NACHT domain 98.1 3.1E-05 6.8E-10 75.2 11.2 140 240-386 2-164 (166)
485 cd03213 ABCG_EPDR ABCG transpo 98.1 1.1E-05 2.3E-10 81.3 8.0 108 232-350 29-171 (194)
486 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.1 8E-06 1.7E-10 83.8 7.3 32 232-263 24-55 (218)
487 PRK13406 bchD magnesium chelat 98.1 2.4E-05 5.2E-10 90.8 11.9 122 512-652 26-173 (584)
488 COG1126 GlnQ ABC-type polar am 98.1 3.3E-06 7.3E-11 83.1 4.2 47 500-546 15-65 (240)
489 PRK11650 ugpC glycerol-3-phosp 98.0 6.3E-06 1.4E-10 90.7 6.7 32 232-263 24-55 (356)
490 smart00763 AAA_PrkA PrkA AAA d 98.0 1E-05 2.2E-10 87.2 8.1 81 205-293 52-144 (361)
491 cd03269 ABC_putative_ATPase Th 98.0 1E-05 2.2E-10 82.6 7.7 32 232-263 20-51 (210)
492 PRK06851 hypothetical protein; 98.0 0.00019 4E-09 78.4 17.6 35 511-545 214-251 (367)
493 cd03238 ABC_UvrA The excision 98.0 2.7E-05 5.9E-10 76.7 10.2 109 232-351 15-150 (176)
494 COG3840 ThiQ ABC-type thiamine 98.0 1.2E-05 2.7E-10 76.8 7.2 112 232-353 19-193 (231)
495 COG1131 CcmA ABC-type multidru 98.0 8E-06 1.7E-10 87.4 6.8 114 232-355 25-202 (293)
496 COG4167 SapF ABC-type antimicr 98.0 2.8E-06 6E-11 80.9 2.9 41 232-272 33-75 (267)
497 COG1117 PstB ABC-type phosphat 98.0 2.1E-05 4.6E-10 77.3 9.0 31 232-262 27-57 (253)
498 PRK11432 fbpC ferric transport 98.0 7.5E-06 1.6E-10 89.9 6.7 32 232-263 26-57 (351)
499 cd03223 ABCD_peroxisomal_ALDP 98.0 1.5E-05 3.3E-10 78.0 8.2 77 232-308 21-120 (166)
500 PRK10923 glnG nitrogen regulat 98.0 3.1E-05 6.7E-10 89.1 12.0 167 511-699 161-372 (469)
No 1
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-118 Score=974.84 Aligned_cols=690 Identities=61% Similarity=1.003 Sum_probs=642.2
Q ss_pred CccchhhhhcCCCCCeEEEecccCCCccEEEECHHHHhhcCCCCCCEEEEeccCCccEEEEEEecCCCCCCeEEEcHHhH
Q 003691 11 KDYSTAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEASKVRVNKVVR 90 (802)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r 90 (802)
.+.+++|...+..++.+.|.. .++..+.+.+++..|..+++..| |.+.|..+...++.+...+. ....+.++...|
T Consensus 2 ~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~l~~g--~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~r 77 (693)
T KOG0730|consen 2 ESPSTAILPVKCPQNNLVVLS-INDDASVVVLSEGAMDKLGLLRG--VLLDGKKRREPVDAVVQDET-SELIGRQTMVSR 77 (693)
T ss_pred CcccccccccccCCCCeEEec-CCCccchheecHHHHhhhcCCcc--eEEECccccCCccceeccCC-ccccchhhheec
Confidence 467889999999999999998 55555589999999999999999 99999876665554443344 778889999999
Q ss_pred hhccccCCCeEEEEeCCCCCCCceEEeccCCCcccCcchhhHHHHhhHhhhhcCcccccCcEEEEecCceeEEEEEEEec
Q 003691 91 SNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETD 170 (802)
Q Consensus 91 ~~~~~~~~~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~ 170 (802)
.++.++.|+.+.+++++.+..+.++.+.|+..+..++....++.+.+.++....+++..|+++ ..+..+.|+++...
T Consensus 78 ~~l~~~~~~~~~~~~~p~v~~~~~i~~l~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 154 (693)
T KOG0730|consen 78 SNLRLQLGRLLHSSDCPSVKRPARIAVLPVDDTSEGIAGELFDVLERPFLLEALRPLVKGDTF---AGLNPAEFKVLELD 154 (693)
T ss_pred cchhhcccceecccCCCCccccceeeeeehhhccccchhhhhhhhhhhhhhhhhCccccccch---hhhhhhhhhccccc
Confidence 999999999999998888888888999999988888888888889999998888999888887 44456678888887
Q ss_pred CCceEeeCCCceEEecCCCCccccccccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCc
Q 003691 171 PGEYCVVAPDTEIFCEGEPVKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSG 250 (802)
Q Consensus 171 p~~~~~v~~~t~i~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtG 250 (802)
|.. +++++|.+.+.+++.+....+ ..+++ +++||+..++..+++++++|+.+|..+.++|+.+|.++|+|||||||
T Consensus 155 ~~~--~v~~~t~~~~~~~~~~~~~~~-~~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~G 230 (693)
T KOG0730|consen 155 PSP--QVTPDTELSYLGEPAKREEEE-LPEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTG 230 (693)
T ss_pred cch--hcCccchhhhcCCCccccccc-ccccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCC
Confidence 776 778899998888887655444 57778 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEechhhhhhccchhHHHHHHHHHHHHhcC-CeEEEecccccccCCCCCCchhHHHHHHHHHH
Q 003691 251 KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDELDSIAPKREKTHGEVERRIVSQLL 329 (802)
Q Consensus 251 KTtLar~la~~l~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 329 (802)
||.+++++|++.++.++.++++++++++.|++++++|.+|+.+...+ |+++||||+|.+++++....+ +++|+..+|+
T Consensus 231 kt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqll 309 (693)
T KOG0730|consen 231 KTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLL 309 (693)
T ss_pred hHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 999999999999999887666 8899999999
Q ss_pred HhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchH
Q 003691 330 TLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGS 409 (802)
Q Consensus 330 ~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~ 409 (802)
++|+++....+++|+++||+|+.||++++| |||+++++++.|+..+|.+|++.+++++++.++.++..++..++||+|+
T Consensus 310 tL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGa 388 (693)
T KOG0730|consen 310 TLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGA 388 (693)
T ss_pred HHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHHHhHHhhccccccccchhhHHhhhhccccchhhhcccccCCCCccceeeecccccccccccccchhhhhh
Q 003691 410 DLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLDNVKREL 489 (802)
Q Consensus 410 dl~~l~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l 489 (802)
|+.++|++|++.+.++ +.++|..|+..++|+++++..++.|+++|+||||++++|.+|
T Consensus 389 DL~~l~~ea~~~~~r~----------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~el 446 (693)
T KOG0730|consen 389 DLAALCREASLQATRR----------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKREL 446 (693)
T ss_pred HHHHHHHHHHHHHhhh----------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHH
Confidence 9999999999988765 456788999999999999999999999999999999999999
Q ss_pred hhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhccCccHHHHHHHHHHHhhC
Q 003691 490 QETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS 569 (802)
Q Consensus 490 ~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~ 569 (802)
++.|.||+++++.|.++|+++++|||||||||||||++||++|++++.+|++|+|+++++||+|++|+.|+++|++|++.
T Consensus 447 q~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~ 526 (693)
T KOG0730|consen 447 QQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQV 526 (693)
T ss_pred HHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCC
Q 003691 570 APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD 649 (802)
Q Consensus 570 ~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~ 649 (802)
+|||+||||||+++..|+.+. +++.+||+++||++|||++..++|+||||||||+.||+|++||||||+.||||+||
T Consensus 527 aP~IiFfDEiDsi~~~R~g~~---~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD 603 (693)
T KOG0730|consen 527 APCIIFFDEIDALAGSRGGSS---SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPD 603 (693)
T ss_pred CCeEEehhhHHhHhhccCCCc---cchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCcc
Confidence 999999999999999997433 37899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcccccccccccc
Q 003691 650 EASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVD 729 (802)
Q Consensus 650 ~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (802)
.+.|++||+.+++++++.+++|+..||+.|+|||||||.++|++|+..|+++.++ ..
T Consensus 604 ~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~-----------------------a~ 660 (693)
T KOG0730|consen 604 LEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE-----------------------AT 660 (693)
T ss_pred HHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc-----------------------cc
Confidence 9999999999999999999999999999999999999999999999999999865 34
Q ss_pred cccHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 003691 730 EIKAVHFEESMKYARRSVSDADIRKYQLFAQT 761 (802)
Q Consensus 730 ~i~~~~f~~al~~~~~s~~~~~~~~y~~~~~~ 761 (802)
.|+.+||++|++.+++|++.+++++|++|.+.
T Consensus 661 ~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 661 EITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred cccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 79999999999999999999999999999864
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-113 Score=915.84 Aligned_cols=551 Identities=49% Similarity=0.861 Sum_probs=508.5
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhc
Q 003691 199 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKL 278 (802)
Q Consensus 199 ~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~~ 278 (802)
++++|.+|||+++.+.++.+++.. ++||+.|.++|+.|++|||||||||||||+||+++|++++.+|+.|+++++++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 478999999999999999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCC----CcEEEEEecCCCCCCC
Q 003691 279 AGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR----AHVIVMGATNRPNSID 354 (802)
Q Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~----~~vivI~~tn~~~~ld 354 (802)
.|+++++++.+|..|....|||+||||||++.+++...+.++++|++.||++.||++... ..|+|||+||+|+.+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD 343 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD 343 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999998765 5799999999999999
Q ss_pred HHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhcccccc--
Q 003691 355 PALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL-- 432 (802)
Q Consensus 355 ~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~-- 432 (802)
++|||.|||+++|.++.|++..|.+||+..++++.+..++++..||..|+||+|+||.+||.+|+..++++..+....
T Consensus 344 paLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~ 423 (802)
T KOG0733|consen 344 PALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPL 423 (802)
T ss_pred HHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999886552220
Q ss_pred --------------ccch--h---------------------------hHHhhhhccccchhhhcccccCCCCccceeee
Q 003691 433 --------------EDET--I---------------------------DAEVLNSMAVTNEHFQTALGTSNPSALRETVV 469 (802)
Q Consensus 433 --------------~~~~--~---------------------------~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~ 469 (802)
+.+. + ..+......+..+||..|+..++|++.|+.+.
T Consensus 424 ~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~ 503 (802)
T KOG0733|consen 424 TKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFA 503 (802)
T ss_pred ccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccce
Confidence 0000 0 01222345678899999999999999999999
Q ss_pred cccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhh
Q 003691 470 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 549 (802)
Q Consensus 470 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~ 549 (802)
.+|+++|+|||++++++.+|...|.||.++++.|+.+|+..|.|+||+||||||||+||||+|++.+.+|++|+|++|++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCC
Q 003691 550 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 629 (802)
Q Consensus 550 ~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 629 (802)
||||+||+.||.+|++||.+.||||||||+|+|++.|+... ...+.|++||||++|||++.+.+|+|||||||||.|
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 99999999999999999999999999999999999998754 457899999999999999999999999999999999
Q ss_pred CccccCCCCcceEEEecCCCHHHHHHHHHHHhc--cCCCCCccCHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHHHH
Q 003691 630 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLR--KSPISPDVDLSALARYTH--GFSGADITEVCQRACKYAIRENIEK 705 (802)
Q Consensus 630 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~--~~~~~~~~~~~~la~~t~--g~sg~di~~~~~~a~~~a~~~~~~~ 705 (802)
|||+|||||||+.+|+++|+.++|.+||+.+++ +.++++|+|++.+|+.+. |||||||..+|++|...|+++.+..
T Consensus 661 DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~ 740 (802)
T KOG0733|consen 661 DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFE 740 (802)
T ss_pred chhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 889999999999999887 9999999999999999999987652
Q ss_pred hHHHHHhhcCCCcccccccccc---cccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcc
Q 003691 706 DIERERRKMENPEAMEEDEVDD---VDEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQS 765 (802)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~f~~al~~~~~s~~~~~~~~y~~~~~~~~~~ 765 (802)
.. +..++... ...++..||++|++.++||+++.+.++|+...+++.-+
T Consensus 741 ~~------------~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L~ 791 (802)
T KOG0733|consen 741 ID------------SSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSLS 791 (802)
T ss_pred cc------------ccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhccc
Confidence 10 11111011 23588999999999999999999999999999887543
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.6e-98 Score=896.09 Aligned_cols=722 Identities=51% Similarity=0.850 Sum_probs=636.2
Q ss_pred eEEEecccC-C-CccEEEECHHHHhhcCCCCCCEEEEe-ccCCccEEEEEEe--cCCCCCCeEEEcHHhHhhccccCCCe
Q 003691 26 RLVVDEAIN-D-DNSVITMHPNTMEKLQFFRGDTVLVK-GKKRKDTVCVVLS--DELCEASKVRVNKVVRSNLRVRLGDV 100 (802)
Q Consensus 26 ~~~v~~~~~-~-~~~~v~~~~~~~~~l~~~~g~~v~i~-~~~~~~~~~~~~~--~~~~~~~~i~~~~~~r~~~~~~~~~~ 100 (802)
.++|.++.+ + |+++++|+|++|.+||+..||+|.|. |++ .+++.+|+ ..+.+.+.|++++.+|.|+|+++||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (733)
T TIGR01243 3 ELRVAEAYPRDVGRGIVRIDRQTAARLGVEPGDFVEIEKGDR--SVVAIVWPLRPDDEGRGIIRMDGYLRANAGVTIGDT 80 (733)
T ss_pred EEEehhhhccCCCCCeEeeCHHHHHhcCCCCCCEEEEecCCC--ceeEEEEecCccccCCCEEeecHHHHhhcCCCCCCe
Confidence 467888866 4 89999999999999999999999999 544 46778886 35678899999999999999999999
Q ss_pred EEEEeCCCCCCCceEEeccCCCcccCcchhhHHHHhhHhhhhcCcccccCcEEEEecCceeEEEEEEEecCCceEeeCCC
Q 003691 101 VSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPD 180 (802)
Q Consensus 101 v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~p~~~~~v~~~ 180 (802)
|+|+++. ++.+..|.+.|..... .+..+..+++.++. .+++..|+.+.+........|+|+++.|.+++.++..
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~ 154 (733)
T TIGR01243 81 VTVERAE-VKEAKKVVLAPTQPIR---FGRDFVDYVKEFLL--GKPISKGETVIVPVLEGALPFVVVSTQPAGFVYVTEA 154 (733)
T ss_pred EEEeecC-CCccceEeeccccccc---cccchHHHHHHHHc--CCCCCCCCEEEecccCcceeEEEEecCCCCcEEECCC
Confidence 9999964 7889999988864321 12334556777775 4789999998876444457899999999999999999
Q ss_pred ceEEecCCCCccccccccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHH
Q 003691 181 TEIFCEGEPVKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 260 (802)
Q Consensus 181 t~i~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~ 260 (802)
|.+.+...+.........++++|++|||++.+++.|++++.+|+.+|++++++++.+++++|||||||||||+|++++|+
T Consensus 155 t~~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 155 TEVEIREKPVREEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred ceEEecCCccccccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 99877654443222224578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCc
Q 003691 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 340 (802)
Q Consensus 261 ~l~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 340 (802)
+++.+++.++++++.+.+.|+.+..++.+|+.+....|++|||||+|.++++++...++.+.++..+|+++|+++..+..
T Consensus 235 ~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 235 EAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred HhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999988777778888999999999999988889
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHH
Q 003691 341 VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAAL 420 (802)
Q Consensus 341 vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~ 420 (802)
++||++||+++.+|+++++++||+..+.++.|+..+|.+||+.+.+.+.+..+.++..++..++||+++|+..++++|++
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~ 394 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAM 394 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred HhHHhhcc--ccccccchhhHHhhhhccccchhhhcccccCCCCccceeeecccccccccccccchhhhhhhhhhcCcCC
Q 003691 421 QCIREKMD--VIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVE 498 (802)
Q Consensus 421 ~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~ 498 (802)
.++++... ........+.........++..+|..++..+.|+.+++...+.|.++|++|+|++.+|+.|.+.+.||+.
T Consensus 395 ~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~ 474 (733)
T TIGR01243 395 AALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLK 474 (733)
T ss_pred HHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhh
Confidence 88876543 2222222333334455678899999999999999999888889999999999999999999999999999
Q ss_pred ChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcc
Q 003691 499 HPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 578 (802)
Q Consensus 499 ~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDE 578 (802)
+++.+.++++.+++|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++++++.+|+.|+...||||||||
T Consensus 475 ~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDE 554 (733)
T TIGR01243 475 HPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDE 554 (733)
T ss_pred CHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHH
Q 003691 579 LDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFK 658 (802)
Q Consensus 579 id~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~ 658 (802)
||++++.|+.... ....++++++||++||++...++++||+|||+|+.||+|++||||||+.|+||+||.++|.+||+
T Consensus 555 id~l~~~r~~~~~--~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 555 IDAIAPARGARFD--TSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFK 632 (733)
T ss_pred hhhhhccCCCCCC--ccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHH
Confidence 9999998865322 34678999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcccccccccccccccHHHHHH
Q 003691 659 ACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEE 738 (802)
Q Consensus 659 ~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~ 738 (802)
.++++.++..++|+..||+.|+||||+||.++|++|++.|+++.+....... .. . ..........|+++||++
T Consensus 633 ~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~---~~---~-~~~~~~~~~~i~~~~f~~ 705 (733)
T TIGR01243 633 IHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEK---LE---V-GEEEFLKDLKVEMRHFLE 705 (733)
T ss_pred HHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchh---hh---c-ccccccccCcccHHHHHH
Confidence 9999999999999999999999999999999999999999998754321000 00 0 000011234799999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHhc
Q 003691 739 SMKYARRSVSDADIRKYQLFAQTLQQ 764 (802)
Q Consensus 739 al~~~~~s~~~~~~~~y~~~~~~~~~ 764 (802)
|++.++||+++++++.|++|.++|+.
T Consensus 706 al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 706 ALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999963
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-84 Score=708.90 Aligned_cols=614 Identities=35% Similarity=0.594 Sum_probs=492.8
Q ss_pred hhhHHHHhhHhhhhcCcccccCcEEEEecC------------------ceeEEEEEEEecCC---ceEeeCCCceEEecC
Q 003691 129 GNLFDAYLKPYFMESYRPVRKGDLFLVRGG------------------MRSVEFKVIETDPG---EYCVVAPDTEIFCEG 187 (802)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~------------------~~~~~~~v~~~~p~---~~~~v~~~t~i~~~~ 187 (802)
.+..+..++.||+ ..|.++.||+|++... ...++|+|++.+|. .+++.++.|.++..+
T Consensus 303 ~~~~~~~l~~~f~-t~ril~~gdvf~i~~~~~~~~~~~~~~l~l~~~~d~~v~~~v~~~ep~~~~~~~i~~~~T~lv~~~ 381 (953)
T KOG0736|consen 303 AGNIDVVLKKHFK-TPRILQSGDVFCIPINSQMANLNGYPELPLWRETDFLVYKKVIEAEPGNESAYIIDTNHTSLVLVG 381 (953)
T ss_pred hhHHHHHHHHHhC-cceeeecCCEEEEeehhhhcccccchhhHhhhhccceeEEEEeecCCCccceEEEcCCCceEEEcc
Confidence 3456678899997 5788999999987321 23678999999885 356667788887655
Q ss_pred CCCcc---ccccccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Q 003691 188 EPVKR---EDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA 264 (802)
Q Consensus 188 ~~~~~---~~~~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~ 264 (802)
....+ .-.....-..+-..-+.+..+-.+..++.- -..|. ..++.-...+||+|+||||||++++++|.+++.
T Consensus 382 ~~ss~~~~lps~~~~l~n~~~~~~~~~~~~~l~~vl~p-~~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~ 457 (953)
T KOG0736|consen 382 ATSSRVPLLPSSLSTLWNSLSPPGLEAKVLELVAVLSP-QKQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELGL 457 (953)
T ss_pred ccccCCcCCChhhHHHhccCCCccchHHHHHHHHHhCc-ccCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHhCC
Confidence 43322 000000001222334444444444444332 12221 122334567999999999999999999999999
Q ss_pred cEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhh---cccCCCcE
Q 003691 265 FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD---GLKSRAHV 341 (802)
Q Consensus 265 ~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld---~~~~~~~v 341 (802)
+++.++|.++.....+..+.++..+|+.++...|++||+-++|.+.-+... ..+.++...+..++. .......+
T Consensus 458 h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls~e~~~~~~~~~ 534 (953)
T KOG0736|consen 458 HLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLSNEDFKFSCPPV 534 (953)
T ss_pred ceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHhcccccCCCCce
Confidence 999999999999999999999999999999999999999999999855443 334455555544443 33356789
Q ss_pred EEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHH
Q 003691 342 IVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQ 421 (802)
Q Consensus 342 ivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~ 421 (802)
+++++++..+.+++.+++ .|.++|.++.|++++|.+||+.+.....+..++.+..++.++.||+.+++.++.......
T Consensus 535 ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~ 612 (953)
T KOG0736|consen 535 IVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLA 612 (953)
T ss_pred EEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHH
Confidence 999999999999999998 567799999999999999999999999999999999999999999999999998766333
Q ss_pred hHHhhcccc---ccccchhhHHhhhhccccchhhhcccccCCCCcccee-eecccccccccccccchhhhhhhhhhcCcC
Q 003691 422 CIREKMDVI---DLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRET-VVEVPNVSWEDIGGLDNVKRELQETVQYPV 497 (802)
Q Consensus 422 ~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~-~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~ 497 (802)
+..+..... ................++++||.+++.+.+....... ...+|+++|+||||++++|.++.+.|..|+
T Consensus 613 ~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL 692 (953)
T KOG0736|consen 613 AKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPL 692 (953)
T ss_pred HHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcc
Confidence 322211110 0000000111223467889999999886654333222 235899999999999999999999999999
Q ss_pred CChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEc
Q 003691 498 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFD 577 (802)
Q Consensus 498 ~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iD 577 (802)
+++++|.. |++++.|||||||||||||.+|||+|.++..+|++|+|+||++||+|+||+|+|++|++||...|||||||
T Consensus 693 ~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFD 771 (953)
T KOG0736|consen 693 KHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFD 771 (953)
T ss_pred cChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEec
Confidence 99999987 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC--CCCcEEEEEecCCCCCCCccccCCCCcceEEEecCC-CHHHHH
Q 003691 578 ELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP-DEASRL 654 (802)
Q Consensus 578 Eid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p-~~~~r~ 654 (802)
|+|+++++||.++ +++++.+||++|||.+|||+. ..+.|+|||||||||.|||||+||||||+.+|++++ |.+.+.
T Consensus 772 ELDSlAP~RG~sG-DSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~ 850 (953)
T KOG0736|consen 772 ELDSLAPNRGRSG-DSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKL 850 (953)
T ss_pred cccccCccCCCCC-CccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHH
Confidence 9999999999874 558899999999999999997 577999999999999999999999999999999987 567899
Q ss_pred HHHHHHhccCCCCCccCHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcccc-ccccccccccc
Q 003691 655 QIFKACLRKSPISPDVDLSALARYT-HGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAME-EDEVDDVDEIK 732 (802)
Q Consensus 655 ~Il~~~l~~~~~~~~~~~~~la~~t-~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~ 732 (802)
.||+...+++.++.++|+.++|+.. ..|||||+.++|.+|.+.|++|.+...... .+. ++.......|+
T Consensus 851 ~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g---------~~~~~e~~~~~v~V~ 921 (953)
T KOG0736|consen 851 RVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESG---------TISEEEQESSSVRVT 921 (953)
T ss_pred HHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhc---------cccccccCCceEEEE
Confidence 9999999999999999999999875 579999999999999999999986543211 011 11123355799
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 003691 733 AVHFEESMKYARRSVSDADIRKYQLFAQTLQ 763 (802)
Q Consensus 733 ~~~f~~al~~~~~s~~~~~~~~y~~~~~~~~ 763 (802)
++||.++++.+.||+++.++.+|+..+.+|.
T Consensus 922 ~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 922 MEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999985
No 5
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-72 Score=611.94 Aligned_cols=499 Identities=37% Similarity=0.568 Sum_probs=425.1
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhC----CcEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccC
Q 003691 236 KPPKGILLYGPPGSGKTLIARAVANETG----AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAP 311 (802)
Q Consensus 236 ~~~~~vLL~GppGtGKTtLar~la~~l~----~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 311 (802)
-.+.+|||+||+|||||.|+++++.++. +++..++|+.+-........+.++.+|..+.+..|+|+++|++|.|+.
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc
Confidence 3457799999999999999999999874 456789999987777667778899999999999999999999999987
Q ss_pred CCCC---CchhHHHHHHHHHHHhhhcccC-CCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcc
Q 003691 312 KREK---THGEVERRIVSQLLTLMDGLKS-RAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN 387 (802)
Q Consensus 312 ~~~~---~~~~~~~~v~~~Ll~~ld~~~~-~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~ 387 (802)
..+. ..+....+....|......+.. +..+.+|++.+....+++.|..+++|...+.++.|+..+|.+||...+.+
T Consensus 509 ~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 509 ASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred cCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh
Confidence 3322 2233444554444444444433 34578999999999999999999999999999999999999999987765
Q ss_pred Ccc-ccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhccccccccchhhHHhhhhccccchhhhcccccCCCCccce
Q 003691 388 MKL-AEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRE 466 (802)
Q Consensus 388 ~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~ 466 (802)
... ....+++-++..|+||...|+..++.+|...++.+.... ....++.++|.++|+.+.|.++|.
T Consensus 589 ~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~-------------~~klltke~f~ksL~~F~P~aLR~ 655 (952)
T KOG0735|consen 589 NLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN-------------GPKLLTKELFEKSLKDFVPLALRG 655 (952)
T ss_pred hhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc-------------CcccchHHHHHHHHHhcChHHhhh
Confidence 432 123356669999999999999999999988777433211 122678899999999999999998
Q ss_pred eeecc-cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCc
Q 003691 467 TVVEV-PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 545 (802)
Q Consensus 467 ~~~~~-~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~ 545 (802)
..... ..+.|+||||+.++|+.|.+.+.||.+++.+|...+++.+.|||||||||||||.||.++|..++..||+|+|+
T Consensus 656 ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGP 735 (952)
T KOG0735|consen 656 IKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGP 735 (952)
T ss_pred ccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCH
Confidence 76544 45999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCC
Q 003691 546 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 625 (802)
Q Consensus 546 ~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~ 625 (802)
+++++|+|.||+++|.+|.+|+...|||+||||+|+++++||.+ ..+..+||+||||++|||.++.++|+|+|||.|
T Consensus 736 ElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD---sTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsR 812 (952)
T KOG0735|consen 736 ELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD---STGVTDRVVNQLLTELDGAEGLDGVYILAATSR 812 (952)
T ss_pred HHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC---CCCchHHHHHHHHHhhccccccceEEEEEecCC
Confidence 99999999999999999999999999999999999999999864 367899999999999999999999999999999
Q ss_pred CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 003691 626 PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEK 705 (802)
Q Consensus 626 ~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~ 705 (802)
||+|||||+||||+|+.+++|+|+..+|.+|++.......++.++|++.+|..|+|||||||+.++..|.+.|+++.+..
T Consensus 813 pdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~ 892 (952)
T KOG0735|consen 813 PDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKR 892 (952)
T ss_pred ccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998664
Q ss_pred hHHHHHhhcCCCcccccccccccccccHHHHHHHH--hhcCCCCCHHHHHHHHHHHHHHhccc
Q 003691 706 DIERERRKMENPEAMEEDEVDDVDEIKAVHFEESM--KYARRSVSDADIRKYQLFAQTLQQSR 766 (802)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al--~~~~~s~~~~~~~~y~~~~~~~~~~~ 766 (802)
.. ..+..+.++...+.... ...+||.+.-+-+.|.+.+..|..++
T Consensus 893 ~~----------------~~~~~p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 939 (952)
T KOG0735|consen 893 ED----------------EEGVVPSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQFLSDE 939 (952)
T ss_pred cC----------------ccccCCccchhhhhhhhhccCCCccccccchhhhhhHHHhhcCcc
Confidence 31 00112223433333332 36678888888888888777776655
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-66 Score=593.92 Aligned_cols=489 Identities=56% Similarity=0.912 Sum_probs=451.2
Q ss_pred ccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEE
Q 003691 222 LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSII 301 (802)
Q Consensus 222 ~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il 301 (802)
+|+.+++.++.+++.++.+++++||||+|||+++++++.. +..+..++++++.+++.+..+..++.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4778899999999999999999999999999999999999 666688999999999999999999999999999999999
Q ss_pred EecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHH
Q 003691 302 FIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEIL 381 (802)
Q Consensus 302 ~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il 381 (802)
++||++.+.+.+.........+++.+++..+++.. +..+++++.++.+..+++++++++||+.++.+..|+...+.+|+
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred eechhhhcccCccccccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 99999999999887667788999999999999998 55588889999999999999999999999999999999999999
Q ss_pred HHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhccccccccchhhHHhhhhccccchhhhcccccCCC
Q 003691 382 RIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNP 461 (802)
Q Consensus 382 ~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~p 461 (802)
..+...+....+.+...++..+.||.++++..+++++.....++.. ........++..++..++..+.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----------~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 160 QIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----------DLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----------ccCcccccccHHHHHHHHHhcCc
Confidence 9999998888888999999999999999999999999888777642 01123455778889999999888
Q ss_pred CccceeeecccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEE
Q 003691 462 SALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (802)
Q Consensus 462 s~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~ 541 (802)
+ ++.....+.++|+++||++.+|+.+++.+.+++.+++.|.+.++.+++|+|||||||||||+||+++|.+++.+|+.
T Consensus 229 ~--~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~ 306 (494)
T COG0464 229 S--RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFIS 306 (494)
T ss_pred c--cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEE
Confidence 7 66777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEE
Q 003691 542 VKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 621 (802)
Q Consensus 542 v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~ 621 (802)
+++++++++|+|+++++|+.+|+.|++..||||||||+|++++.|+.+.. +...+++++||++|++++...+|+||+
T Consensus 307 v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~---~~~~r~~~~lL~~~d~~e~~~~v~vi~ 383 (494)
T COG0464 307 VKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED---GSGRRVVGQLLTELDGIEKAEGVLVIA 383 (494)
T ss_pred eeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc---hHHHHHHHHHHHHhcCCCccCceEEEe
Confidence 99999999999999999999999999999999999999999999976532 234799999999999999999999999
Q ss_pred ecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCC--CCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q 003691 622 ATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP--ISPDVDLSALARYTHGFSGADITEVCQRACKYAI 699 (802)
Q Consensus 622 aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~--~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~ 699 (802)
|||+||.||+|++||||||+.++||+||.++|.+||+.+++... +..++++..+++.|+||||+||..+|++|++.++
T Consensus 384 aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~ 463 (494)
T COG0464 384 ATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEAL 463 (494)
T ss_pred cCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998554 4678999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003691 700 RENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSVSDADIRKYQLF 758 (802)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~s~~~~~~~~y~~~ 758 (802)
++.. ...|+.+||.+|++.++|+++ |++|
T Consensus 464 ~~~~------------------------~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 464 REAR------------------------RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred HHhc------------------------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 8863 237999999999999999999 8887
No 7
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-58 Score=484.93 Aligned_cols=602 Identities=28% Similarity=0.436 Sum_probs=445.9
Q ss_pred eEEEecccCC---CccEEEECHHHHhhcCCCCCCEEEEeccCCccEEEEEEecCCCCCCeEEEcHHhHhhccccCCCeEE
Q 003691 26 RLVVDEAIND---DNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEASKVRVNKVVRSNLRVRLGDVVS 102 (802)
Q Consensus 26 ~~~v~~~~~~---~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~v~ 102 (802)
.++|..+... -.+..+++|+..++-+ +..+... ..++.......+.+|.|.++..+|+|+++++|+.|.
T Consensus 10 ~~~v~k~ps~e~altn~a~v~~~DF~~~~-----~~~vd~~---~~~Fs~~~~~~i~~g~i~fs~~qR~wa~~Sl~qev~ 81 (744)
T KOG0741|consen 10 AFQVTKCPSNELALTNCAYVSPSDFRQFQ-----VIIVDNF---HYVFSTEFTPSIPPGNIGFSLPQRKWAGWSLGQEVE 81 (744)
T ss_pred eeeeecCCchhhhccCcceeCccccccce-----eeEEeee---eEEEEeeccCCCCCceeccchhhhhhhhcccCceeE
Confidence 3667666543 4567888888776433 2223222 245555566788999999999999999999999999
Q ss_pred EEeCCCCCCCc---eEEec----cCC-CcccCcchh-hHHHHhhHhhhhcCcccccCcEEEEecCc-eeEEEEEEEec--
Q 003691 103 VHPCPDVKYGR---RVHIL----PID-DTIEGVTGN-LFDAYLKPYFMESYRPVRKGDLFLVRGGM-RSVEFKVIETD-- 170 (802)
Q Consensus 103 v~~~~~~~~~~---~v~~~----~~~-~~~~~~~~~-~~~~~l~~~~~~~~~~v~~g~~~~~~~~~-~~~~~~v~~~~-- 170 (802)
|.++....... .+++. ... .+...++.+ ....+.+.|- ..++.+|+.+.+...+ ..+.++|.+++
T Consensus 82 V~~~~~~~~~~~l~~m~le~dF~~k~~~~sep~Dad~ma~qF~~~y~---~q~fsvgQ~~~f~f~~~~~l~l~v~~ie~~ 158 (744)
T KOG0741|consen 82 VKPFTFDGSCDYLGSMTLEIDFLNKKNTTSEPFDADEMAKQFKRQYN---SQAFSVGQQLVFEFNGNKLLGLKVKDIEAF 158 (744)
T ss_pred EEecccCcccccceeEEEEehhhhcCCCCCCCCCHHHHHHHHHHHhc---CcccCCccEEEEEecCceEeeeEEEEEeee
Confidence 99864222212 22221 111 112233333 3333444443 3468899987765443 44566766653
Q ss_pred -C--------------CceEeeCCCceEEecCCCCc----------cccccc--cCCCCccc--ccChHHHHHHH-HHHH
Q 003691 171 -P--------------GEYCVVAPDTEIFCEGEPVK----------REDEER--LNEVGYDD--VGGVRKQMAQI-RELV 220 (802)
Q Consensus 171 -p--------------~~~~~v~~~t~i~~~~~~~~----------~~~~~~--~~~~~~~~--i~G~~~~~~~l-~~~v 220 (802)
| ..++++..+|.|.+..+... +..... -++..|++ |||+++++..| |+++
T Consensus 159 D~~~~~~~~a~~~~~~~~~G~l~~nT~i~F~k~~~s~lnL~~~~~~k~~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAF 238 (744)
T KOG0741|consen 159 DPGISEGESAVTKRQKIERGLLLGNTQIVFEKAENSSLNLIGKSKTKPASNSIINPDFNFESMGIGGLDKEFSDIFRRAF 238 (744)
T ss_pred ccccccCCcccccccceeeeEeecCcEEEEEeccCcceEeeccccccchhccccCCCCChhhcccccchHHHHHHHHHHH
Confidence 3 13578888998855322111 011111 13444543 89999999988 8889
Q ss_pred HccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc-EEEEechhhhhhccchhHHHHHHHHHHHHhc---
Q 003691 221 ELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-FFLINGPEIMSKLAGESESNLRKAFEEAEKN--- 296 (802)
Q Consensus 221 ~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~--- 296 (802)
......|++.+++|+.+-+|+|||||||||||.+||.|...+++. .-.|||++++++|+|++++++|.+|.+|+..
T Consensus 239 AsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~ 318 (744)
T KOG0741|consen 239 ASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRR 318 (744)
T ss_pred HhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHh
Confidence 888999999999999999999999999999999999999999764 5789999999999999999999999999763
Q ss_pred -----CCeEEEecccccccCCCCCCc--hhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEe
Q 003691 297 -----APSIIFIDELDSIAPKREKTH--GEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDI 369 (802)
Q Consensus 297 -----~p~il~iDEid~l~~~~~~~~--~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i 369 (802)
.-.||++||||++|..|+... ..+...+++||++.||+..+-.+++|||.||+.+.||++|.|||||...+++
T Consensus 319 ~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEI 398 (744)
T KOG0741|consen 319 LGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEI 398 (744)
T ss_pred hCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEE
Confidence 236999999999999998654 3577899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCc----cccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhccccccccchhhHHhhhhc
Q 003691 370 GVPDEVGRLEILRIHTKNMK----LAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSM 445 (802)
Q Consensus 370 ~~P~~~~R~~Il~~~~~~~~----l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (802)
..||+..|++||++|+++|. +..++|+.++|..|..|+|++|+.+++.|...++.+....- .....+....+..
T Consensus 399 sLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~--~~~~~~~~~~e~l 476 (744)
T KOG0741|consen 399 SLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAG--GKVEVDPVAIENL 476 (744)
T ss_pred eCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccC--cceecCchhhhhe
Confidence 99999999999999998874 67899999999999999999999999999888887765432 1234455566788
Q ss_pred cccchhhhcccccCCCCcccee-----eecccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCC
Q 003691 446 AVTNEHFQTALGTSNPSALRET-----VVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPP 520 (802)
Q Consensus 446 ~v~~~~~~~al~~~~ps~~~~~-----~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~Gpp 520 (802)
.+++.||..||..++|+..... .+...-+.|..- +.+.+ .......+..+.....+-..+||.|||
T Consensus 477 kV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~-----v~~il----~~G~llv~qvk~s~~s~lvSvLl~Gp~ 547 (744)
T KOG0741|consen 477 KVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPP-----VTRIL----DDGKLLVQQVKNSERSPLVSVLLEGPP 547 (744)
T ss_pred eecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeeccc-----HHHHH----hhHHHHHHHhhccccCcceEEEEecCC
Confidence 9999999999999998753211 111122334221 11111 111111112222234555679999999
Q ss_pred CCchhHHHHHHHHHhCCeEEEEeCcchhhhccCccH----HHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCc
Q 003691 521 GCGKTLLAKAIANECQANFISVKGPELLTMWFGESE----ANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGA 596 (802)
Q Consensus 521 GtGKT~lakala~~~~~~~i~v~~~~l~~~~vg~se----~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~ 596 (802)
|+|||+||..+|..+.+||+.+-.++-+ +|-+| ..|..+|+.|+++.-+||++|+|+.|+..-.-+ ...
T Consensus 548 ~sGKTaLAA~iA~~S~FPFvKiiSpe~m---iG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIG----PRf 620 (744)
T KOG0741|consen 548 GSGKTALAAKIALSSDFPFVKIISPEDM---IGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIG----PRF 620 (744)
T ss_pred CCChHHHHHHHHhhcCCCeEEEeChHHc---cCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccC----chh
Confidence 9999999999999999999998877654 44443 479999999999999999999999998764332 345
Q ss_pred hHHHHHHHHHHhhccCCC-CcEEEEEecCCCCCCCc-cccCCCCcceEEEecCCCH-HHHHHHHH
Q 003691 597 ADRVLNQLLTEMDGMNAK-KTVFIIGATNRPDIIDP-ALLRPGRLDQLIYIPLPDE-ASRLQIFK 658 (802)
Q Consensus 597 ~~~vl~~lL~~ld~~~~~-~~v~vi~aTn~~~~ld~-allr~gRf~~~i~~~~p~~-~~r~~Il~ 658 (802)
++.+++.|+..|....+. .+.+|++||++.+.|.. .++. .|+..+++|..+. ++..++++
T Consensus 621 SN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 621 SNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred hHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 677777777777776554 47999999999888865 5555 9999999997654 55555554
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-58 Score=474.00 Aligned_cols=253 Identities=48% Similarity=0.827 Sum_probs=242.7
Q ss_pred eecccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcch
Q 003691 468 VVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 547 (802)
Q Consensus 468 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l 547 (802)
..+.|+++++||||+++..+++++.++.|+++|++|..+|+.||+|+|||||||||||+||||+|+..+++||.+.|++|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCC
Q 003691 548 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD 627 (802)
Q Consensus 548 ~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~ 627 (802)
..+|+|+..+.+|++|+.|+..+||||||||||+++.+|-.++.+.+....|.+-+||++|||+.+.++|=||+||||+|
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 99999999999999999999999999999999999999987766667778899999999999999999999999999999
Q ss_pred CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 003691 628 IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDI 707 (802)
Q Consensus 628 ~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~ 707 (802)
.|||||+||||||+.|+||+||.++|.+||+.|.+++.+..++|++.||+.++|||||||+++|.+|.+.|+++.
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~----- 376 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER----- 376 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred HHHHhhcCCCcccccccccccccccHHHHHHHHhhcCC
Q 003691 708 ERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARR 745 (802)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~ 745 (802)
...||++||.+|..++..
T Consensus 377 --------------------R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 377 --------------------RDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred --------------------cCeecHHHHHHHHHHHHh
Confidence 237999999999988743
No 9
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-53 Score=439.13 Aligned_cols=285 Identities=43% Similarity=0.690 Sum_probs=257.5
Q ss_pred eeecccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcc
Q 003691 467 TVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 546 (802)
Q Consensus 467 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~ 546 (802)
.+...|++.|+||.|+.++|+.|++++..|+..|+.|+. .++|.+|+|++||||||||+||||+|.+++..|+.|+.+.
T Consensus 202 Il~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsst 280 (491)
T KOG0738|consen 202 ILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSST 280 (491)
T ss_pred HhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhh
Confidence 344568999999999999999999999999999999997 5678899999999999999999999999999999999999
Q ss_pred hhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCC----CCcEEEEEe
Q 003691 547 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNA----KKTVFIIGA 622 (802)
Q Consensus 547 l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~----~~~v~vi~a 622 (802)
+.++|-|+||+.+|-+|+.|+..+|++|||||||+|+..||.+++ .++++|+.++||.+|||+.. .+.|+|+||
T Consensus 281 ltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~E--HEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAA 358 (491)
T KOG0738|consen 281 LTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSE--HEASRRVKSELLVQMDGVQGTLENSKVVMVLAA 358 (491)
T ss_pred hhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccc--hhHHHHHHHHHHHHhhccccccccceeEEEEec
Confidence 999999999999999999999999999999999999999988643 57899999999999999864 345999999
Q ss_pred cCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q 003691 623 TNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIREN 702 (802)
Q Consensus 623 Tn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~ 702 (802)
||.||.||.||+| ||.+.||+|+||.++|..+|+..++..+++++++++.||+.++||||+||.++|++|.+.++++.
T Consensus 359 TN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 359 TNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred cCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHhHHHHHhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 003691 703 IEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQ 764 (802)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~s~~~~~~~~y~~~~~~~~~ 764 (802)
+.....+..... ..++. ..+|+.+||+.|++.++||++..++.+|++|.+.|++
T Consensus 437 i~g~~~~ei~~l------akE~~--~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 437 IAGLTPREIRQL------AKEEP--KMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGS 490 (491)
T ss_pred HhcCCcHHhhhh------hhhcc--ccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcC
Confidence 654322111111 11111 2479999999999999999999999999999999975
No 10
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-50 Score=410.74 Aligned_cols=247 Identities=51% Similarity=0.856 Sum_probs=230.5
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 275 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~ 275 (802)
++.++++|+||||+++|+++|++.+++|+.+|++|+.+||.||+|||||||||||||+||||+|+..++.|+.+.|+++.
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHH---HHHHHHHHHhhhcccCCCcEEEEEecCCCCC
Q 003691 276 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVE---RRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 352 (802)
Q Consensus 276 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~---~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ 352 (802)
.+|.|+....+|.+|+-|+.+.||||||||||++..+|-.....-+ .|..-+|++.|||+..+.+|-||++||+++.
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 9999999999999999999999999999999999988864432222 3556778899999999999999999999999
Q ss_pred CCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhcccccc
Q 003691 353 IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 432 (802)
Q Consensus 353 ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~ 432 (802)
|||+|.||||||+.|+||.|+...|.+||++|+++|.+.++++++.++..++|++|+|+.++|.+|++.++++..
T Consensus 303 LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R----- 377 (406)
T COG1222 303 LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR----- 377 (406)
T ss_pred cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred ccchhhHHhhhhccccchhhhcccccC
Q 003691 433 EDETIDAEVLNSMAVTNEHFQTALGTS 459 (802)
Q Consensus 433 ~~~~~~~~~~~~~~v~~~~~~~al~~~ 459 (802)
..++++||.+|...+
T Consensus 378 ------------~~Vt~~DF~~Av~KV 392 (406)
T COG1222 378 ------------DEVTMEDFLKAVEKV 392 (406)
T ss_pred ------------CeecHHHHHHHHHHH
Confidence 457888998887655
No 11
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-49 Score=390.10 Aligned_cols=293 Identities=34% Similarity=0.626 Sum_probs=257.8
Q ss_pred eeecccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcc
Q 003691 467 TVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 546 (802)
Q Consensus 467 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~ 546 (802)
.+.+.|++.|+|+.|++..|+.|++.+..|++.|++|.. +..|.+||||||||||||+.||+|+|.+.+..|++|+.++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 456789999999999999999999999999999999987 6778899999999999999999999999999999999999
Q ss_pred hhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC-CCCcEEEEEecCC
Q 003691 547 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-AKKTVFIIGATNR 625 (802)
Q Consensus 547 l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-~~~~v~vi~aTn~ 625 (802)
|+++|.|+||+.++.+|+.||...|+||||||||++++.|+... +++++|+..+||.+|.|+. ..++++|++|||-
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE---seasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE---SEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc---hHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 99999999999999999999999999999999999999886543 5678999999999999984 4678999999999
Q ss_pred CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q 003691 626 PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRACKYAIRENIE 704 (802)
Q Consensus 626 ~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~ 704 (802)
||.||.|+.| ||+++||+|+|+...|..+|+.++...+.. .+.|+..|+++|+||||+||.-++++|.+..+++...
T Consensus 279 Pw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 279 PWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred chhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 9999999999 999999999999999999999999877543 4568999999999999999999999999999998877
Q ss_pred HhHHHHHhhcCCCcc-c--------------c----cc--cccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 003691 705 KDIERERRKMENPEA-M--------------E----ED--EVDDVDEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQ 763 (802)
Q Consensus 705 ~~~~~~~~~~~~~~~-~--------------~----~~--~~~~~~~i~~~~f~~al~~~~~s~~~~~~~~y~~~~~~~~ 763 (802)
+........-.+... + + +. +.-..+.||+.||..++...+|.+++.++.+.++|.+.|+
T Consensus 357 AthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFG 436 (439)
T KOG0739|consen 357 ATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFG 436 (439)
T ss_pred hhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhc
Confidence 665433222110000 0 0 00 0112568999999999999999999999999999999998
Q ss_pred cc
Q 003691 764 QS 765 (802)
Q Consensus 764 ~~ 765 (802)
+.
T Consensus 437 qE 438 (439)
T KOG0739|consen 437 QE 438 (439)
T ss_pred cC
Confidence 74
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-47 Score=371.46 Aligned_cols=250 Identities=44% Similarity=0.745 Sum_probs=238.0
Q ss_pred cccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhh
Q 003691 470 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 549 (802)
Q Consensus 470 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~ 549 (802)
+.|++++.||||++-.|+++++.++.|+.+.++++++|+.||+|+|+|||||||||+|+|++|+.....||.|.|+++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCC
Q 003691 550 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 629 (802)
Q Consensus 550 ~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 629 (802)
+|.|+..+.++.+|..|+..+|+|+||||||+++.+|=......+....|++-+||++|||+...-+|-||++|||.+.|
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 99999999999999999999999999999999999996655555677889999999999999999999999999999999
Q ss_pred CccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003691 630 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 709 (802)
Q Consensus 630 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 709 (802)
||||+||||+|+.|+||+||..+++-+|.....++.+++++|++.+....+..||+||.+||++|.+.|++++
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n------- 380 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN------- 380 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred HHhhcCCCcccccccccccccccHHHHHHHHhhcC
Q 003691 710 ERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYAR 744 (802)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ 744 (802)
.-.|...||++|.+.+.
T Consensus 381 ------------------ryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 381 ------------------RYVVLQKDFEKAYKTVV 397 (408)
T ss_pred ------------------ceeeeHHHHHHHHHhhc
Confidence 23689999999998754
No 13
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-47 Score=418.49 Aligned_cols=252 Identities=48% Similarity=0.837 Sum_probs=240.5
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003691 197 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 276 (802)
Q Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~ 276 (802)
+.++++|+||||+++.+.+|++.|.+|++||+.|..+|+.+++|||||||||||||++||++|++.+..|+.|.|+++++
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHH
Q 003691 277 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 356 (802)
Q Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~a 356 (802)
+|+|+++..++.+|+.|+...|+|+|+||||+++..|+...++...|++++|++.|||+....+|+|||+||+|+.||++
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A 586 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA 586 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHH
Confidence 99999999999999999999999999999999999998766788999999999999999999999999999999999999
Q ss_pred hhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhccccccccch
Q 003691 357 LRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDET 436 (802)
Q Consensus 357 l~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~~~~~ 436 (802)
+.||||||+.|+++.||.+.|++||+.+++++++.+++++..|+..|+||+|+||..+|++|+..++++..+
T Consensus 587 LlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~-------- 658 (693)
T KOG0730|consen 587 LLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE-------- 658 (693)
T ss_pred HcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred hhHHhhhhccccchhhhcccccCCCCc
Q 003691 437 IDAEVLNSMAVTNEHFQTALGTSNPSA 463 (802)
Q Consensus 437 ~~~~~~~~~~v~~~~~~~al~~~~ps~ 463 (802)
...++..||+++++..+++.
T Consensus 659 -------a~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 659 -------ATEITWQHFEEALKAVRPSL 678 (693)
T ss_pred -------cccccHHHHHHHHHhhcccC
Confidence 44578889999998877653
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-47 Score=368.56 Aligned_cols=252 Identities=43% Similarity=0.743 Sum_probs=239.7
Q ss_pred cccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhh
Q 003691 470 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 549 (802)
Q Consensus 470 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~ 549 (802)
.+|+.+++-+||++...+++++.++.|.++|++|..+|+..|+|+|||||||+|||.||+++|....+.||.++|+++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCC
Q 003691 550 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 629 (802)
Q Consensus 550 ~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 629 (802)
+|+|+..+.++++|-.|+..+|+|||.||||++...|..+++..+....|.+-+||++|||++..+++-||+||||.|.|
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 99999999999999999999999999999999999997766666667888899999999999999999999999999999
Q ss_pred CccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003691 630 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 709 (802)
Q Consensus 630 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 709 (802)
|||++||||+|+.|+||+|+.+.|.+|++.+.+++.+...+++..+|+...|.||++++.+|.+|.++|+++.
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------- 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------- 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred HHhhcCCCcccccccccccccccHHHHHHHHhhcCCC
Q 003691 710 ERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRS 746 (802)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~s 746 (802)
...+|.+||+-|..++-..
T Consensus 373 ------------------rvhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 373 ------------------RVHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred ------------------hccccHHHHHHHHHHHHhc
Confidence 2379999999999887443
No 15
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=5.6e-45 Score=408.09 Aligned_cols=398 Identities=25% Similarity=0.384 Sum_probs=303.7
Q ss_pred CCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHH
Q 003691 297 APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 376 (802)
Q Consensus 297 ~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~ 376 (802)
.|.++++.|++..+.+ .. +...|.++........+.+|+.+. .-.+++.|.+ +...++++.|+.++
T Consensus 81 ~~~~~vl~d~h~~~~~-----~~----~~r~l~~l~~~~~~~~~~~i~~~~--~~~~p~el~~---~~~~~~~~lP~~~e 146 (489)
T CHL00195 81 TPALFLLKDFNRFLND-----IS----ISRKLRNLSRILKTQPKTIIIIAS--ELNIPKELKD---LITVLEFPLPTESE 146 (489)
T ss_pred CCcEEEEecchhhhcc-----hH----HHHHHHHHHHHHHhCCCEEEEEcC--CCCCCHHHHh---ceeEEeecCcCHHH
Confidence 4789999999988832 11 223333332223333444444443 2457777875 45678999999999
Q ss_pred HHHHHHHHhccCcc-ccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhccccccccchhhHHhhhhccccchhhhcc
Q 003691 377 RLEILRIHTKNMKL-AEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTA 455 (802)
Q Consensus 377 R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a 455 (802)
..++++.+...... .+..+++.++..+.|++..++..++..+.... ..++.+ .++ . + .+.-.+.
T Consensus 147 i~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~-----~~~~~~--~~~-----~--i-~~~k~q~ 211 (489)
T CHL00195 147 IKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIATY-----KTIDEN--SIP-----L--I-LEEKKQI 211 (489)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----CCCChh--hHH-----H--H-HHHHHHH
Confidence 99999877654332 24556789999999999999888776543210 001100 000 0 0 0000011
Q ss_pred cccCCCCccceeeecccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh
Q 003691 456 LGTSNPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 535 (802)
Q Consensus 456 l~~~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~ 535 (802)
+.. ...- ....+..+|++|||++.+|+.+.+.... .......+|+.+++|+|||||||||||++|+++|+++
T Consensus 212 ~~~---~~~l--e~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 212 ISQ---TEIL--EFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred Hhh---hccc--cccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 110 0000 0113567899999999999999865432 2334567789999999999999999999999999999
Q ss_pred CCeEEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCC
Q 003691 536 QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKK 615 (802)
Q Consensus 536 ~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~ 615 (802)
+.+|+.++++.+.++|+|+++++++.+|+.|+...||||||||||.++..+.... .++...+++++||+.|+. ...
T Consensus 284 ~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~--d~~~~~rvl~~lL~~l~~--~~~ 359 (489)
T CHL00195 284 QLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG--DSGTTNRVLATFITWLSE--KKS 359 (489)
T ss_pred CCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC--CchHHHHHHHHHHHHHhc--CCC
Confidence 9999999999999999999999999999999999999999999999987654322 245678999999999985 356
Q ss_pred cEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCC--CCccCHHHHHHHccCCCHHHHHHHHHH
Q 003691 616 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPI--SPDVDLSALARYTHGFSGADITEVCQR 693 (802)
Q Consensus 616 ~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~--~~~~~~~~la~~t~g~sg~di~~~~~~ 693 (802)
+++||+|||+++.|||+++||||||+.++|++|+.++|.+||+.++++... ..+.|+..||+.|+||||+||+++|.+
T Consensus 360 ~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~e 439 (489)
T CHL00195 360 PVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIE 439 (489)
T ss_pred ceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999988643 247889999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCCcccccccccccccccHHHHHHHHhhcCCC--CCHHHHHHHHHHHHH
Q 003691 694 ACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRS--VSDADIRKYQLFAQT 761 (802)
Q Consensus 694 a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~s--~~~~~~~~y~~~~~~ 761 (802)
|+..|..+. ..++.+||..|++.+.|+ ...++++.|++|...
T Consensus 440 A~~~A~~~~--------------------------~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 440 AMYIAFYEK--------------------------REFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred HHHHHHHcC--------------------------CCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 998887532 369999999999999996 578899999999875
No 16
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-46 Score=403.49 Aligned_cols=272 Identities=42% Similarity=0.755 Sum_probs=248.2
Q ss_pred ccccccccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEe
Q 003691 191 KREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLIN 270 (802)
Q Consensus 191 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~ 270 (802)
+++.+-.+++++|+||||+++...++..+|.+|+++|++|+.+|+..|.||||+||||||||.||+++|++.+..|+.|.
T Consensus 498 kREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVK 577 (802)
T KOG0733|consen 498 KREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVK 577 (802)
T ss_pred hcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeec
Confidence 34445567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCC
Q 003691 271 GPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRP 350 (802)
Q Consensus 271 ~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~ 350 (802)
|++++++|+|+++..+|.+|+.|+...|||||+||+|+|++.++........|+++||++.|||+..+.+|.||++||+|
T Consensus 578 GPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRP 657 (802)
T KOG0733|consen 578 GPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRP 657 (802)
T ss_pred CHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCC
Confidence 99999999999999999999999999999999999999999999888888899999999999999999999999999999
Q ss_pred CCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhc--cCccccchhhHHHHhhcC--CCchHHHHHHHHHHHHHhHHhh
Q 003691 351 NSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTK--NMKLAEDVDLERVAKDTH--GYVGSDLAALCTEAALQCIREK 426 (802)
Q Consensus 351 ~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~--~~~l~~~~~l~~la~~t~--g~~~~dl~~l~~~A~~~~~~~~ 426 (802)
+.+||++.|||||++.++++.|+..+|..||+.+++ +.++..+++++.|+..+. ||+|+||..||++|++.++++.
T Consensus 658 DiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~ 737 (802)
T KOG0733|consen 658 DIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRES 737 (802)
T ss_pred cccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 778899999999999887 9999999999999999999887
Q ss_pred ccccccccchhhHHhhhhccccchhhhcccccCCCCc
Q 003691 427 MDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSA 463 (802)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~ 463 (802)
...++.......... ....++..||+.|++.++|+.
T Consensus 738 ~~~~~~~~~~~~~~~-~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 738 LFEIDSSEDDVTVRS-STIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred HhhccccCcccceee-eeeeecHHHHHHHHHhcCCCc
Confidence 654433322211110 134577889999999998874
No 17
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-47 Score=401.98 Aligned_cols=244 Identities=41% Similarity=0.714 Sum_probs=229.1
Q ss_pred ccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhh
Q 003691 471 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 550 (802)
Q Consensus 471 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~ 550 (802)
..+++|+|+-|.++.|++|.+.+.+ ++.|+.|.++|-+.|+||||+||||||||+||+|+|++.+.||+...|+++-.+
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 3578999999999999999999987 789999999999999999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCC
Q 003691 551 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIID 630 (802)
Q Consensus 551 ~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 630 (802)
|||...+.||.+|+.|++.+||||||||||++.++|..... ...+..+||||.+|||+..+.+||||+|||+|+.||
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~---~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ---HYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH---HHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 99999999999999999999999999999999999976432 278899999999999999999999999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003691 631 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERE 710 (802)
Q Consensus 631 ~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~ 710 (802)
+||.||||||++|.+|.||...|.+||+.|+++.+++.++|...+|+-|.|||||||.|+++.|+..|..+.
T Consensus 454 ~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg-------- 525 (752)
T KOG0734|consen 454 KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG-------- 525 (752)
T ss_pred HHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred HhhcCCCcccccccccccccccHHHHHHHHhhc
Q 003691 711 RRKMENPEAMEEDEVDDVDEIKAVHFEESMKYA 743 (802)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 743 (802)
...|+++|++-|-..+
T Consensus 526 -----------------a~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 526 -----------------AEMVTMKHLEFAKDRI 541 (752)
T ss_pred -----------------cccccHHHHhhhhhhe
Confidence 2268888888876554
No 18
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-45 Score=359.78 Aligned_cols=260 Identities=39% Similarity=0.696 Sum_probs=240.2
Q ss_pred CCCCccceeeecccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe
Q 003691 459 SNPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (802)
Q Consensus 459 ~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~ 538 (802)
+.|+..--.+.+.|++++.|+||..+..+.|++.++.|+.+|+.|..+|+.||+|+|||||||||||.+|+++|+..+..
T Consensus 159 idpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac 238 (435)
T KOG0729|consen 159 IDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC 238 (435)
T ss_pred CCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce
Confidence 34444333445679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEE
Q 003691 539 FISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVF 618 (802)
Q Consensus 539 ~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~ 618 (802)
||.|-|++|..+|+|+..+.++++|+.|+....|||||||||++.+.|=..+...+....|.+-+|+++|||+..++++-
T Consensus 239 firvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnik 318 (435)
T KOG0729|consen 239 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIK 318 (435)
T ss_pred EEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeE
Confidence 99999999999999999999999999999999999999999999998855544445567788889999999999999999
Q ss_pred EEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 003691 619 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYA 698 (802)
Q Consensus 619 vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a 698 (802)
|++|||||+.|||||+||||+|+.++|.+||.+.|.+||+.|.+.+.+..|+.++.||+...+.+|++|+.+|.+|.+.|
T Consensus 319 vlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfa 398 (435)
T KOG0729|consen 319 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 398 (435)
T ss_pred EEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHhhcCCCcccccccccccccccHHHHHHHHhhc
Q 003691 699 IRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYA 743 (802)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 743 (802)
++..- ...|..||.+|+.++
T Consensus 399 irarr-------------------------k~atekdfl~av~kv 418 (435)
T KOG0729|consen 399 IRARR-------------------------KVATEKDFLDAVNKV 418 (435)
T ss_pred HHHHh-------------------------hhhhHHHHHHHHHHH
Confidence 98652 258899999999886
No 19
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-45 Score=360.23 Aligned_cols=250 Identities=42% Similarity=0.726 Sum_probs=237.6
Q ss_pred cccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhh
Q 003691 470 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 549 (802)
Q Consensus 470 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~ 549 (802)
+.|...++||||++...++|.+.+..|+.+++.|.++|+.+|+|+|+|||||||||++|++.|...+..|+.+-|+++..
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCC
Q 003691 550 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 629 (802)
Q Consensus 550 ~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 629 (802)
+|+|+..+.++..|..|+...|+||||||+|++..+|-.+....+....|.+-+||++|||+.+..++-||++|||.+.|
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiL 323 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDIL 323 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccccc
Confidence 99999999999999999999999999999999999997765555666778888999999999999999999999999999
Q ss_pred CccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003691 630 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 709 (802)
Q Consensus 630 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 709 (802)
||||+|+||+|+.|+||.|+.+.|..|++.|.+++.+.+|+++++||+.|++|+|++++++|-+|.+.|+++.
T Consensus 324 DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~------- 396 (424)
T KOG0652|consen 324 DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG------- 396 (424)
T ss_pred CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHhhcCCCcccccccccccccccHHHHHHHHhhcC
Q 003691 710 ERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYAR 744 (802)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ 744 (802)
...|+.+||.+++.++.
T Consensus 397 ------------------atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 397 ------------------ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred ------------------cccccHHHHHHHHHHHH
Confidence 23799999999988764
No 20
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-46 Score=367.80 Aligned_cols=249 Identities=39% Similarity=0.720 Sum_probs=234.7
Q ss_pred cccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhh
Q 003691 470 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 549 (802)
Q Consensus 470 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~ 549 (802)
..|..++.||||++...+++++.++.|+.+|+.+..+|+.+|+|++|||+||||||.||+|+|+...+.|+.+-|++++.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCC
Q 003691 550 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 629 (802)
Q Consensus 550 ~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 629 (802)
+|.|+..+.+|++|+-|...+|+|+||||||++..+|-.+++.......|.+-+||+++||+..++.|=||+|||+.+.|
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999999996655444555667777999999999999999999999999999
Q ss_pred CccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003691 630 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 709 (802)
Q Consensus 630 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 709 (802)
||||+||||+|+.|.||.||...++.||+.|..++.+..+++++.+...-+.+|||||+++|.+|.+.|+++.-
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerR------ 411 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERR------ 411 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999762
Q ss_pred HHhhcCCCcccccccccccccccHHHHHHHHhhc
Q 003691 710 ERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYA 743 (802)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 743 (802)
..++++||.+|.+++
T Consensus 412 -------------------m~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 412 -------------------MKVTMEDFKKAKEKV 426 (440)
T ss_pred -------------------hhccHHHHHHHHHHH
Confidence 269999999998776
No 21
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-43 Score=363.86 Aligned_cols=286 Identities=36% Similarity=0.609 Sum_probs=243.9
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhcc-CCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhh
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFG-MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 550 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~ 550 (802)
-.++|+||||++.+++.|++.+..|+.+++.|...+ +++++|||||||||||||+||+++|.+.+.+|+.|.++.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 368999999999999999999999999999997544 5688999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCC--cEEEEEecCCCCC
Q 003691 551 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKK--TVFIIGATNRPDI 628 (802)
Q Consensus 551 ~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~--~v~vi~aTn~~~~ 628 (802)
|+|++++.++.+|..|.+..||||||||+|+++..|+++. .++...+.++|+...||+.... +|+|+||||||..
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~d---HEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~D 243 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTD---HEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFD 243 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccch---HHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCcc
Confidence 9999999999999999999999999999999999995432 4678889999999999997654 5999999999999
Q ss_pred CCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003691 629 IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIE 708 (802)
Q Consensus 629 ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~ 708 (802)
||.|++| |+.++++++.|+.++|.+|++..+++..+++++|+.++|..|+||||+||+++|+.|+...+++.+... .
T Consensus 244 lDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~-~ 320 (386)
T KOG0737|consen 244 LDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSE-T 320 (386)
T ss_pred HHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhc-c
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999988764 1
Q ss_pred H---HHhhcCCCccccc-ccccccccccHHHHHHHHhhcCCCCCHHH--HHHHHHHHHHHh
Q 003691 709 R---ERRKMENPEAMEE-DEVDDVDEIKAVHFEESMKYARRSVSDAD--IRKYQLFAQTLQ 763 (802)
Q Consensus 709 ~---~~~~~~~~~~~~~-~~~~~~~~i~~~~f~~al~~~~~s~~~~~--~~~y~~~~~~~~ 763 (802)
. ...........+. ...-..++++++||..|+..+.++++.+. ....+.|.+.|.
T Consensus 321 ~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~ 381 (386)
T KOG0737|consen 321 GLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYG 381 (386)
T ss_pred cchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhc
Confidence 1 0000000000000 00112578999999999998887755433 234556666653
No 22
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-43 Score=398.67 Aligned_cols=249 Identities=45% Similarity=0.785 Sum_probs=231.5
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhc
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 551 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~ 551 (802)
..+.|.|+.|.+++|++|.|.+.+ +++|+.|.++|..+|+|+||+||||||||+||||+|++.+.||+.++|+++..++
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 458999999999999999999987 8899999999999999999999999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccC-CCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCC
Q 003691 552 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRG-SSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIID 630 (802)
Q Consensus 552 vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~-~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 630 (802)
+|.....++.+|+.|+..+|||+|+||||.+...|+ ......+......+||||.+|||+...+.|+|+|+|||||.||
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 999999999999999999999999999999999994 2233345567889999999999999999999999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003691 631 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 709 (802)
Q Consensus 631 ~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 709 (802)
+|++||||||+.|++++|+..+|.+||+.|+++..++ +++|+..+|.+|.||+|+||.++|++|+..|.++..
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~------ 538 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL------ 538 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc------
Confidence 9999999999999999999999999999999999885 778999999999999999999999999999999762
Q ss_pred HHhhcCCCcccccccccccccccHHHHHHHHhhcCCC
Q 003691 710 ERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRS 746 (802)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~s 746 (802)
..|+..||+.|++.+...
T Consensus 539 -------------------~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 539 -------------------REIGTKDLEYAIERVIAG 556 (774)
T ss_pred -------------------CccchhhHHHHHHHHhcc
Confidence 379999999999854433
No 23
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=6e-43 Score=384.31 Aligned_cols=252 Identities=44% Similarity=0.738 Sum_probs=235.0
Q ss_pred cccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhh
Q 003691 470 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 549 (802)
Q Consensus 470 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~ 549 (802)
+.|+++|+||||++.+++++++.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCC
Q 003691 550 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 629 (802)
Q Consensus 550 ~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 629 (802)
+|+|++++.++.+|..|+...|+||||||||.++..|.......+....+++.+||++||++....+++||+|||+|+.|
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 99999999999999999999999999999999998875443333345678899999999999888899999999999999
Q ss_pred CccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003691 630 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 709 (802)
Q Consensus 630 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 709 (802)
|||++||||||+.|+||+|+.++|..||+.++.++++..++|+..++..|+||||+||.++|++|++.|+++.
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~------- 370 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN------- 370 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred HHhhcCCCcccccccccccccccHHHHHHHHhhcCCC
Q 003691 710 ERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRS 746 (802)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~s 746 (802)
...|+.+||++|++.+...
T Consensus 371 ------------------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 371 ------------------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred ------------------CCccCHHHHHHHHHHHHhc
Confidence 2379999999999997654
No 24
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-42 Score=379.70 Aligned_cols=269 Identities=43% Similarity=0.735 Sum_probs=241.9
Q ss_pred ccccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 003691 195 EERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEI 274 (802)
Q Consensus 195 ~~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l 274 (802)
.++++++.|+||||+++.|..|.+.|.+|+.||++|.+ |..+..|||||||||||||.+|+|+|.++...|+.|.|+++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 35689999999999999999999999999999999965 88889999999999999999999999999999999999999
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCC--CchhHHHHHHHHHHHhhhcccC--CCcEEEEEecCCC
Q 003691 275 MSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREK--THGEVERRIVSQLLTLMDGLKS--RAHVIVMGATNRP 350 (802)
Q Consensus 275 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~--~~~~~~~~v~~~Ll~~ld~~~~--~~~vivI~~tn~~ 350 (802)
+++|+|++|+++|.+|+.|+...|||||+||+|.++|+|+. +.+.+-.|+++||+..||++.. ...|+|||+||+|
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRP 821 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP 821 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCc
Confidence 99999999999999999999999999999999999999975 4567889999999999999984 4679999999999
Q ss_pred CCCCHHhhccCCcceEEEeCCCC-HHHHHHHHHHHhccCccccchhhHHHHhhcC-CCchHHHHHHHHHHHHHhHHhhcc
Q 003691 351 NSIDPALRRFGRFDREIDIGVPD-EVGRLEILRIHTKNMKLAEDVDLERVAKDTH-GYVGSDLAALCTEAALQCIREKMD 428 (802)
Q Consensus 351 ~~ld~al~r~~rf~~~i~i~~P~-~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~-g~~~~dl~~l~~~A~~~~~~~~~~ 428 (802)
+-|||+|.||||||+.++++++. .+.+..+|++.++++.+..++++.++|+..+ .|+|+|+-++|..|.+.++++...
T Consensus 822 DLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 822 DLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred cccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999885 5667899999999999999999999999875 799999999999999999998876
Q ss_pred ccccccchhhHHhhhhccccchhhhcccccCCCCcc
Q 003691 429 VIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSAL 464 (802)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~ 464 (802)
.++...............++++||.++.++..|+..
T Consensus 902 ~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 902 DIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred HhhhccccccccCCceEEEEHHHHHHHHHhcCCccc
Confidence 554432222222234677899999999999988743
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=5.2e-42 Score=335.60 Aligned_cols=242 Identities=38% Similarity=0.705 Sum_probs=218.7
Q ss_pred ccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhh
Q 003691 471 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 550 (802)
Q Consensus 471 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~ 550 (802)
.++++++|++|+++.|+..+-.+.| ++.|+.|.+ ..|+++|||||||||||++|+++|++.+.+|+.++..++++.
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHH-hhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 5789999999999999887766665 677777765 568899999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCC
Q 003691 551 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIID 630 (802)
Q Consensus 551 ~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 630 (802)
|||+..+.|+++|++|++.+|||+||||+|+++-.|... +-.+....++|.||++|||+..+.+|+.|||||+|+.||
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ--elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD 268 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ--ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLD 268 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH--HhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcC
Confidence 999999999999999999999999999999998877543 224557789999999999999999999999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHH-HHHHHHHHHHHHHHHHhHHH
Q 003691 631 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITE-VCQRACKYAIRENIEKDIER 709 (802)
Q Consensus 631 ~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~-~~~~a~~~a~~~~~~~~~~~ 709 (802)
||+.+ ||...|+|.+|+.++|.+|++.+++++|++-+.++..+++.|.||||+||.. +++.|...|+.++-
T Consensus 269 ~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~------ 340 (368)
T COG1223 269 PAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR------ 340 (368)
T ss_pred HHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhch------
Confidence 99998 9999999999999999999999999999999999999999999999999975 77777777777652
Q ss_pred HHhhcCCCcccccccccccccccHHHHHHHHhhcCC
Q 003691 710 ERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARR 745 (802)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~ 745 (802)
..|+.+||+.|+++-++
T Consensus 341 -------------------e~v~~edie~al~k~r~ 357 (368)
T COG1223 341 -------------------EKVEREDIEKALKKERK 357 (368)
T ss_pred -------------------hhhhHHHHHHHHHhhcc
Confidence 26999999999987544
No 26
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-42 Score=382.73 Aligned_cols=247 Identities=43% Similarity=0.791 Sum_probs=233.3
Q ss_pred ccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhh
Q 003691 471 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 550 (802)
Q Consensus 471 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~ 550 (802)
...++|.|+.|.++.|++|.+.+.+ ++.|..|..+|...|+|++|+||||||||+|||++|++.+.||++++++++..+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 3568999999999999999999885 788999999999999999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCC
Q 003691 551 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIID 630 (802)
Q Consensus 551 ~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 630 (802)
|+|.....+|.+|.+|++.+|||+||||||++...|+.+.+......+..+||||.+|||+..+..|+||++|||||.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999987655545556679999999999999889999999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003691 631 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERE 710 (802)
Q Consensus 631 ~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~ 710 (802)
|||+||||||+.|.++.||...|.+|++.|+++.+++.++|+..+|+.|.||||+|+.+++++|+..|.++.
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n-------- 374 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN-------- 374 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HhhcCCCcccccccccccccccHHHHHHHHhhc
Q 003691 711 RRKMENPEAMEEDEVDDVDEIKAVHFEESMKYA 743 (802)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 743 (802)
...|++.||++|+..+
T Consensus 375 -----------------~~~i~~~~i~ea~drv 390 (596)
T COG0465 375 -----------------KKEITMRDIEEAIDRV 390 (596)
T ss_pred -----------------CeeEeccchHHHHHHH
Confidence 2379999999998776
No 27
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=4.9e-41 Score=371.68 Aligned_cols=257 Identities=48% Similarity=0.817 Sum_probs=237.5
Q ss_pred eecccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcch
Q 003691 468 VVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 547 (802)
Q Consensus 468 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l 547 (802)
..+.|.++|++|+|+++.++.+.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|.+++.+|+.+.++++
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCC
Q 003691 548 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD 627 (802)
Q Consensus 548 ~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~ 627 (802)
.++|+|++++.++.+|+.++...|+||||||||.++..|+......+....+.+.++|.+++++...++++||+|||+++
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 99999999999999999999999999999999999988865443333445678889999999988888999999999999
Q ss_pred CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 003691 628 IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDI 707 (802)
Q Consensus 628 ~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~ 707 (802)
.||++++||||||..|+||+|+.++|.+||+.++++.++..++++..+|..|+||||+||+++|++|++.|+++.
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~----- 356 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD----- 356 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 999999999999999999999999999999999999999988999999999999999999999999999998763
Q ss_pred HHHHhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCH
Q 003691 708 ERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSVSD 749 (802)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~s~~~ 749 (802)
...|+.+||.+|++.++++-..
T Consensus 357 --------------------~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 357 --------------------RTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred --------------------CCCcCHHHHHHHHHHHhccccc
Confidence 2369999999999999876543
No 28
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-41 Score=361.57 Aligned_cols=297 Identities=36% Similarity=0.631 Sum_probs=247.2
Q ss_pred cccccccc--ccccchhh-hhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC-eEEEEeCcc
Q 003691 471 VPNVSWED--IGGLDNVK-RELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-NFISVKGPE 546 (802)
Q Consensus 471 ~~~~~~~~--i~g~~~~k-~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~-~~i~v~~~~ 546 (802)
.|+..|++ |||++.-- ...++++....-.|+...++|...-+|+|||||||||||.+|+.+...+++ .=-.|+||+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 56777877 57888554 444666666667789999999999999999999999999999999999974 345689999
Q ss_pred hhhhccCccHHHHHHHHHHHhh--------CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEE
Q 003691 547 LLTMWFGESEANVREIFDKARQ--------SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVF 618 (802)
Q Consensus 547 l~~~~vg~se~~i~~lf~~a~~--------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~ 618 (802)
++++|||+||.+||.+|..|.. +...||+|||||+++..||+..++ .+.++.|+||||.-|||++...+++
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~-TGVhD~VVNQLLsKmDGVeqLNNIL 371 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGS-TGVHDTVVNQLLSKMDGVEQLNNIL 371 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCC-CCccHHHHHHHHHhcccHHhhhcEE
Confidence 9999999999999999998864 345799999999999999987554 6789999999999999999999999
Q ss_pred EEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccC----CCCCccCHHHHHHHccCCCHHHHHHHHHHH
Q 003691 619 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS----PISPDVDLSALARYTHGFSGADITEVCQRA 694 (802)
Q Consensus 619 vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~----~~~~~~~~~~la~~t~g~sg~di~~~~~~a 694 (802)
||+-|||+|+||+||||||||...+++.+||++.|.+|++.|.+++ .++.|+|+.+||..|.+||||+|+.+++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999776 477899999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhhcCCCcccccccccccccccHHHHHHHHhhcCCC--CCHHHHHHHHH-----HHHH----Hh
Q 003691 695 CKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRS--VSDADIRKYQL-----FAQT----LQ 763 (802)
Q Consensus 695 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~s--~~~~~~~~y~~-----~~~~----~~ 763 (802)
...|+.+.+..... ..++ ....+.-.|+++||..||.+++|. +++++++.|.. |... +.
T Consensus 452 ~S~A~nR~vk~~~~---------~~~~-~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~ 521 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGK---------VEVD-PVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILD 521 (744)
T ss_pred HHHHHHhhhccCcc---------eecC-chhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHh
Confidence 99999998765411 0111 111234579999999999999995 78999988853 2222 22
Q ss_pred cccCCCCcccccccc
Q 003691 764 QSRGFGSEFRFADRT 778 (802)
Q Consensus 764 ~~~~~~~~~~~~~~~ 778 (802)
..--+.+|+|-++++
T Consensus 522 ~G~llv~qvk~s~~s 536 (744)
T KOG0741|consen 522 DGKLLVQQVKNSERS 536 (744)
T ss_pred hHHHHHHHhhccccC
Confidence 223344466666663
No 29
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=366.70 Aligned_cols=250 Identities=40% Similarity=0.713 Sum_probs=232.2
Q ss_pred cccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhh
Q 003691 470 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 549 (802)
Q Consensus 470 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~ 549 (802)
+.|.++|+||+|++..++.+.+.+.+|+.+++.|..+++.+++|+|||||||||||++|+++|++++.+|+.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCC
Q 003691 550 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 629 (802)
Q Consensus 550 ~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 629 (802)
+|+|++++.++.+|+.|+...|||+||||||.++..|.......+....+.+.+||++||++....++.||+|||+++.|
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 99999999999999999999999999999999998886543333334567788999999998878889999999999999
Q ss_pred CccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003691 630 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 709 (802)
Q Consensus 630 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 709 (802)
|++++||||||+.|+||+||.++|.+||+.++.++.+..+++++.++..++||||+||+++|++|++.|+++.
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------- 408 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------- 408 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred HHhhcCCCcccccccccccccccHHHHHHHHhhcC
Q 003691 710 ERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYAR 744 (802)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ 744 (802)
...|+.+||++|+.++.
T Consensus 409 ------------------r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 409 ------------------RMKVTQADFRKAKEKVL 425 (438)
T ss_pred ------------------CCccCHHHHHHHHHHHH
Confidence 23699999999998873
No 30
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-40 Score=353.96 Aligned_cols=280 Identities=38% Similarity=0.642 Sum_probs=249.2
Q ss_pred eecccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcch
Q 003691 468 VVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 547 (802)
Q Consensus 468 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l 547 (802)
....+++.|+|+.|++.+|+.+.+.+.||...++.|..+ ..+.+|+||.||||+|||+|++++|.+++..|+.++++.|
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 344578999999999999999999999999999999874 3567799999999999999999999999999999999999
Q ss_pred hhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC--CCCcEEEEEecCC
Q 003691 548 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--AKKTVFIIGATNR 625 (802)
Q Consensus 548 ~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--~~~~v~vi~aTn~ 625 (802)
.++|+|++++.++.+|+-|+...|+|+|+||||+++..|.. ......+++..++|.++++.. ..++|+||||||+
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 99999999999999999999999999999999999999943 235577899999999999975 3568999999999
Q ss_pred CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCC-CCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q 003691 626 PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPI-SPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIE 704 (802)
Q Consensus 626 ~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~-~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~ 704 (802)
||.+|.|++| ||.+++|+|+|+.++|..+|+..+.+.+. -.+.|+..|++.|+||||+||.++|++|++--.+....
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 9999999999 99999999999999999999999987733 34578999999999999999999999999988876543
Q ss_pred HhHHHHHhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcc
Q 003691 705 KDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQS 765 (802)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~s~~~~~~~~y~~~~~~~~~~ 765 (802)
. ....-...+..+.++..||+.+++.++|+++.+.+++|++|...|+.+
T Consensus 378 ~------------~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~ 426 (428)
T KOG0740|consen 378 T------------TDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSS 426 (428)
T ss_pred c------------hhhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhccc
Confidence 2 001112335678999999999999999999999999999999999764
No 31
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.3e-38 Score=311.78 Aligned_cols=303 Identities=35% Similarity=0.605 Sum_probs=257.9
Q ss_pred hhhHHHHhhHhhhhcCcccccCcEEEEecCceeEEEEEEEecCCceEeeCCCceEEecCCCCccccccccCCCCcccccC
Q 003691 129 GNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLNEVGYDDVGG 208 (802)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~p~~~~~v~~~t~i~~~~~~~~~~~~~~~~~~~~~~i~G 208 (802)
.++|+.|.++.|.+ ..++.|+.+.-.+......|+|+++.|.+.+++++.|.+... .+.. ...+..++++++|+.|
T Consensus 50 ~~~F~~YArdQW~G--e~v~eg~ylFD~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~-~~~~-~~~e~~~~it~ddViG 125 (368)
T COG1223 50 PEVFNIYARDQWLG--EVVREGDYLFDTRMFPDYAFKVIRVVPSGGGIITSTTIFVLE-TPRE-EDREIISDITLDDVIG 125 (368)
T ss_pred HHHHHHHHHHhhcc--eeeecCceEeecccccccceeEEEEeCCCCceecceEEEEec-Ccch-hhhhhhccccHhhhhc
Confidence 45788999999974 458999988776666778899999999998877766655443 2221 1234568899999999
Q ss_pred hHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhccchhHHHHHH
Q 003691 209 VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 288 (802)
Q Consensus 209 ~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~~~g~~~~~l~~ 288 (802)
++.++.+++-+++. +..|+.|..| .|++||+|||||||||++|++||++...+++.++..++++.++|+...+++.
T Consensus 126 qEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihe 201 (368)
T COG1223 126 QEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHE 201 (368)
T ss_pred hHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHH
Confidence 99999999877776 8889988876 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEEecccccccCCCCCC--chhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceE
Q 003691 289 AFEEAEKNAPSIIFIDELDSIAPKREKT--HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDRE 366 (802)
Q Consensus 289 vf~~a~~~~p~il~iDEid~l~~~~~~~--~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~ 366 (802)
+++.|....|||+||||+|++.-++.-. .+++ ..++++|++.||++.++.+|+.|++||+|+.||+++++ ||..+
T Consensus 202 ly~rA~~~aPcivFiDE~DAiaLdRryQelRGDV-sEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeE 278 (368)
T COG1223 202 LYERARKAAPCIVFIDELDAIALDRRYQELRGDV-SEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEE 278 (368)
T ss_pred HHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccH-HHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhhe
Confidence 9999999999999999999998776532 2333 45789999999999999999999999999999999998 99999
Q ss_pred EEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHH-HHHHHHHHhHHhhccccccccchhhHHhhhhc
Q 003691 367 IDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAA-LCTEAALQCIREKMDVIDLEDETIDAEVLNSM 445 (802)
Q Consensus 367 i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~-l~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (802)
|+|..|+.++|.+|++.+.+.+++.-+.+++.++..|.|++|+||.. +++.|..+++.+. ..
T Consensus 279 IEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed-----------------~e 341 (368)
T COG1223 279 IEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED-----------------RE 341 (368)
T ss_pred eeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc-----------------hh
Confidence 99999999999999999999999998899999999999999999864 4455555666543 23
Q ss_pred cccchhhhcccccC
Q 003691 446 AVTNEHFQTALGTS 459 (802)
Q Consensus 446 ~v~~~~~~~al~~~ 459 (802)
.++.+|++.|+...
T Consensus 342 ~v~~edie~al~k~ 355 (368)
T COG1223 342 KVEREDIEKALKKE 355 (368)
T ss_pred hhhHHHHHHHHHhh
Confidence 46677788877653
No 32
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-39 Score=314.54 Aligned_cols=257 Identities=39% Similarity=0.726 Sum_probs=227.7
Q ss_pred cCCceEeeCCCceEEecCCCCc---cc---cccccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEE
Q 003691 170 DPGEYCVVAPDTEIFCEGEPVK---RE---DEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL 243 (802)
Q Consensus 170 ~p~~~~~v~~~t~i~~~~~~~~---~~---~~~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL 243 (802)
.|.+.+-+..++.+.++.-|.. +. ..+.-+...|+||||++++++++.+.+.+|+.|++.|+++|+.||+|+|+
T Consensus 131 kPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLm 210 (424)
T KOG0652|consen 131 KPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLM 210 (424)
T ss_pred CCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEe
Confidence 3556666777777655543321 10 12344677999999999999999999999999999999999999999999
Q ss_pred ECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHH--
Q 003691 244 YGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVE-- 321 (802)
Q Consensus 244 ~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~-- 321 (802)
|||||||||.+||+.|...+..|+.+.|+++...+.|+..+.+|..|+-|....|+||||||+|++..++-.+...-+
T Consensus 211 YGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDRE 290 (424)
T KOG0652|consen 211 YGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDRE 290 (424)
T ss_pred eCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988754322212
Q ss_pred -HHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHH
Q 003691 322 -RRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVA 400 (802)
Q Consensus 322 -~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la 400 (802)
.|..-.|++.+|++.+...|-||++||+.+-+||++.|.||+++.|+||.|+++.|.+|+++|.+++.+.+++++++++
T Consensus 291 VQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELa 370 (424)
T KOG0652|consen 291 VQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELA 370 (424)
T ss_pred HHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHh
Confidence 2344557788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchHHHHHHHHHHHHHhHHhh
Q 003691 401 KDTHGYVGSDLAALCTEAALQCIREK 426 (802)
Q Consensus 401 ~~t~g~~~~dl~~l~~~A~~~~~~~~ 426 (802)
+.|++|.|+...++|-+|.+.++++.
T Consensus 371 RsTddFNGAQcKAVcVEAGMiALRr~ 396 (424)
T KOG0652|consen 371 RSTDDFNGAQCKAVCVEAGMIALRRG 396 (424)
T ss_pred hcccccCchhheeeehhhhHHHHhcc
Confidence 99999999999999999999999875
No 33
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-39 Score=314.25 Aligned_cols=247 Identities=43% Similarity=0.733 Sum_probs=226.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 275 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~ 275 (802)
++-++++|.||||++-+++++++.+++|+.|.++++.+||.||+|||+|||||||||+|++++|+...+.|+.|.|+++.
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhH---HHHHHHHHHHhhhcccCCCcEEEEEecCCCCC
Q 003691 276 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEV---ERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 352 (802)
Q Consensus 276 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~---~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ 352 (802)
.+|.|+....++.+|.-|+.+.|+|+||||+|+++.++-...... -.|++-.|++.||++.+..+|-||.+||+.+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt 306 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT 306 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc
Confidence 999999999999999999999999999999999998875433222 24667778899999999999999999999999
Q ss_pred CCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhcccccc
Q 003691 353 IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 432 (802)
Q Consensus 353 ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~ 432 (802)
+||++.|+||+++.|+||.|+..++.-++...+.+|.+.+++|++.+..+.+..+++|+.++|++|.+.+++...
T Consensus 307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr----- 381 (408)
T KOG0727|consen 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENR----- 381 (408)
T ss_pred cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred ccchhhHHhhhhccccchhhhcccccC
Q 003691 433 EDETIDAEVLNSMAVTNEHFQTALGTS 459 (802)
Q Consensus 433 ~~~~~~~~~~~~~~v~~~~~~~al~~~ 459 (802)
..+...||+++.+..
T Consensus 382 ------------yvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 382 ------------YVVLQKDFEKAYKTV 396 (408)
T ss_pred ------------eeeeHHHHHHHHHhh
Confidence 345667777765543
No 34
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-39 Score=312.64 Aligned_cols=246 Identities=42% Similarity=0.792 Sum_probs=226.5
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 275 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~ 275 (802)
++.++-+|+-+||+++++++|++.+++|.+||++|+++||..|+|+|||||||+|||.||+++|....+.|+.++|+++.
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCc----hhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC
Q 003691 276 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTH----GEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 351 (802)
Q Consensus 276 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~----~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~ 351 (802)
.+|.|+....+|.+|-.|+.+.|+|+|+||||.+...+.... +++ .|..-.|++.+|++....++-||.+||+.+
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsev-qrtmlellnqldgfeatknikvimatnrid 297 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEV-QRTMLELLNQLDGFEATKNIKVIMATNRID 297 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHH-HHHHHHHHHhccccccccceEEEEeccccc
Confidence 999999999999999999999999999999999988775432 233 344456788899999999999999999999
Q ss_pred CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhccccc
Q 003691 352 SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVID 431 (802)
Q Consensus 352 ~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~ 431 (802)
-+|+++.|+||+++.|+||+|+++.|.+||++|.+++.+...+++..+|....|-+|+++...|.+|.+.++++.
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer----- 372 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER----- 372 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred cccchhhHHhhhhccccchhhhcccccC
Q 003691 432 LEDETIDAEVLNSMAVTNEHFQTALGTS 459 (802)
Q Consensus 432 ~~~~~~~~~~~~~~~v~~~~~~~al~~~ 459 (802)
...++++||+-|...+
T Consensus 373 ------------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 373 ------------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred ------------hccccHHHHHHHHHHH
Confidence 4568888888776543
No 35
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-39 Score=323.22 Aligned_cols=247 Identities=46% Similarity=0.777 Sum_probs=226.8
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 275 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~ 275 (802)
++-+..+|.||||++.++++|.+.+++|+.||++++..|+.||+||+|||+||||||.||+++|+...+.|+.+-|++++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHH---HHHHHhhhcccCCCcEEEEEecCCCCC
Q 003691 276 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIV---SQLLTLMDGLKSRAHVIVMGATNRPNS 352 (802)
Q Consensus 276 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~---~~Ll~~ld~~~~~~~vivI~~tn~~~~ 352 (802)
.+|.|+....+|++|+-|..+.|+|+||||||++..++-...+.-++.+. -.|++.+|++.+++.|-||.+||+.+.
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~ 336 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 336 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc
Confidence 99999999999999999999999999999999999988665544333333 356777899999999999999999999
Q ss_pred CCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhcccccc
Q 003691 353 IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 432 (802)
Q Consensus 353 ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~ 432 (802)
+||+|.|+||+++.|+|+.||+..+..|+++|+.+|.+..+++++.+...-+.++|+||.++|.+|.+.++++.
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------ 410 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------ 410 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred ccchhhHHhhhhccccchhhhcccccC
Q 003691 433 EDETIDAEVLNSMAVTNEHFQTALGTS 459 (802)
Q Consensus 433 ~~~~~~~~~~~~~~v~~~~~~~al~~~ 459 (802)
...++.+||.++.+.+
T Consensus 411 -----------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 411 -----------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred -----------HhhccHHHHHHHHHHH
Confidence 3567888888776543
No 36
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-39 Score=329.61 Aligned_cols=263 Identities=40% Similarity=0.665 Sum_probs=233.5
Q ss_pred cCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 003691 198 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK 277 (802)
Q Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~ 277 (802)
-+.+.|+||.|+.++++-|+|+|.+|+.+|++|+.+ ..|=++||++||||||||+||+++|.+++..|+.|+.+.+.++
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 367999999999999999999999999999999863 3566889999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCch-hHHHHHHHHHHHhhhcccCC----CcEEEEEecCCCCC
Q 003691 278 LAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHG-EVERRIVSQLLTLMDGLKSR----AHVIVMGATNRPNS 352 (802)
Q Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~-~~~~~v~~~Ll~~ld~~~~~----~~vivI~~tn~~~~ 352 (802)
|.|++++.+|.+|+.|+...|++|||||||.||..++.... +..+|+.+.|+-.|||+... ..|+|+++||-|++
T Consensus 285 wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWd 364 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWD 364 (491)
T ss_pred hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcc
Confidence 99999999999999999999999999999999999986543 56789999999999998653 24889999999999
Q ss_pred CCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhcccccc
Q 003691 353 IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 432 (802)
Q Consensus 353 ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~ 432 (802)
||++++| ||.+.|++|.|+.+.|..+++..++...+.++++++.+++.++||+|+||..+|++|++..+++....+.-
T Consensus 365 iDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 365 IDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred hHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999987654332
Q ss_pred ccc-hhhHHhhhhccccchhhhcccccCCCCcc
Q 003691 433 EDE-TIDAEVLNSMAVTNEHFQTALGTSNPSAL 464 (802)
Q Consensus 433 ~~~-~~~~~~~~~~~v~~~~~~~al~~~~ps~~ 464 (802)
... ....+.. ...++..||+.|+..++|+..
T Consensus 443 ~ei~~lakE~~-~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 443 REIRQLAKEEP-KMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHhhhhhhhcc-ccccchhhHHHHHHHcCcCCC
Confidence 211 1111222 255889999999999988754
No 37
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-39 Score=340.17 Aligned_cols=245 Identities=42% Similarity=0.697 Sum_probs=227.6
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003691 197 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 276 (802)
Q Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~ 276 (802)
...+++|+|+-|+++++++|.|+++. ++.|+.|.+||-+-|+||||+||||||||+|||++|++.+.+|++..|+++-.
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 34578999999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHH
Q 003691 277 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 356 (802)
Q Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~a 356 (802)
.++|....++|.+|+.|+.+.||||||||||++..+|........+..++||+..||++.++..|+||++||.|+.||++
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~A 455 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKA 455 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHH
Confidence 99999999999999999999999999999999999998766667889999999999999999999999999999999999
Q ss_pred hhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhccccccccch
Q 003691 357 LRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDET 436 (802)
Q Consensus 357 l~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~~~~~ 436 (802)
|.||||||++|.+|.||...|.+||..|++++.+..++|+.-||+-|.||+|+||++|+..|+..+....
T Consensus 456 L~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg---------- 525 (752)
T KOG0734|consen 456 LTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG---------- 525 (752)
T ss_pred hcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC----------
Confidence 9999999999999999999999999999999999999999999999999999999999999998775433
Q ss_pred hhHHhhhhccccchhhhcccccC
Q 003691 437 IDAEVLNSMAVTNEHFQTALGTS 459 (802)
Q Consensus 437 ~~~~~~~~~~v~~~~~~~al~~~ 459 (802)
...+++.+++.+-.++
T Consensus 526 -------a~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 526 -------AEMVTMKHLEFAKDRI 541 (752)
T ss_pred -------cccccHHHHhhhhhhe
Confidence 3346667766654443
No 38
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-39 Score=325.45 Aligned_cols=248 Identities=42% Similarity=0.729 Sum_probs=229.6
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhc
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 551 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~ 551 (802)
.+++|+.++|+-.+..++++.+..|+..+++|.++|+.+|+|++||||||+|||.+|+++|..++.+|+.+..+++.++|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCc
Q 003691 552 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDP 631 (802)
Q Consensus 552 vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 631 (802)
.|++.+.|++.|..|+...|||||+||||+++++|-+.....+....+.+-.||++||++....+|-+|+|||+|+.|||
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 99999999999999999999999999999999999554444455566777788899999999999999999999999999
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003691 632 ALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERER 711 (802)
Q Consensus 632 allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~ 711 (802)
||+||||+|+.++.|+|+...|+.|++.+.........+|.+.+.+.++||+|+|+++.|++|.+.|+.+.-
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~-------- 358 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER-------- 358 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhh--------
Confidence 999999999999999999999999999999988888889999999999999999999999999999988652
Q ss_pred hhcCCCcccccccccccccccHHHHHHHHhhcC
Q 003691 712 RKMENPEAMEEDEVDDVDEIKAVHFEESMKYAR 744 (802)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ 744 (802)
..+-.++|..++.++.
T Consensus 359 -----------------~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 359 -----------------DEVLHEDFMKLVRKQA 374 (388)
T ss_pred -----------------HHHhHHHHHHHHHHHH
Confidence 2577888988887753
No 39
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=3.8e-38 Score=360.86 Aligned_cols=249 Identities=44% Similarity=0.804 Sum_probs=228.2
Q ss_pred cccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhh
Q 003691 470 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 549 (802)
Q Consensus 470 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~ 549 (802)
+.+.++|+|++|++++|+++.+.+.+ +.+++.+...+..+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 35789999999999999999998876 78888999999999999999999999999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCC
Q 003691 550 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII 629 (802)
Q Consensus 550 ~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l 629 (802)
.|+|.+++.++.+|+.|+...||||||||||.++..|+...........+++++||.+||++....+++||+|||+|+.|
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhc
Confidence 99999999999999999999999999999999998886543222344578999999999999888899999999999999
Q ss_pred CccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003691 630 DPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER 709 (802)
Q Consensus 630 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 709 (802)
||+++||||||+.|++++|+.++|.+||+.++++.++..++++..+|..+.||||+||.++|++|+..|.++.
T Consensus 207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~------- 279 (495)
T TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN------- 279 (495)
T ss_pred CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999888888899999999999999999999999998876643
Q ss_pred HHhhcCCCcccccccccccccccHHHHHHHHhhcC
Q 003691 710 ERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYAR 744 (802)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ 744 (802)
...|+.+||+.|+..+.
T Consensus 280 ------------------~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 280 ------------------KTEITMNDIEEAIDRVI 296 (495)
T ss_pred ------------------CCCCCHHHHHHHHHHHh
Confidence 23699999999999764
No 40
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=8.9e-38 Score=348.94 Aligned_cols=251 Identities=43% Similarity=0.769 Sum_probs=214.5
Q ss_pred ecccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe----------
Q 003691 469 VEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN---------- 538 (802)
Q Consensus 469 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~---------- 538 (802)
.+.|+++|++|||++..++++++.+.+|+.+++.|..+++.+++|+|||||||||||++|+++|++++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 3468999999999999999999999999999999999999999999999999999999999999998543
Q ss_pred EEEEeCcchhhhccCccHHHHHHHHHHHhhC----CCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCC
Q 003691 539 FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAK 614 (802)
Q Consensus 539 ~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~ 614 (802)
|+.++++++.++|+|++++.++.+|+.++.. .|||+||||+|+++..|+.+.+ +....+++++||++||++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s--~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS--SDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc--chHHHHHHHHHHHHhcccccC
Confidence 7788999999999999999999999998864 6999999999999988865322 234567899999999999888
Q ss_pred CcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc-CCCCC---------ccCHHHHHH-------
Q 003691 615 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK-SPISP---------DVDLSALAR------- 677 (802)
Q Consensus 615 ~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~-~~~~~---------~~~~~~la~------- 677 (802)
++++||+|||+++.||||++||||||..|+|++|+.++|.+||+.++.. .++.. ..++..+++
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999864 34421 112222221
Q ss_pred ----------------------HccCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcccccccccccccccHHH
Q 003691 678 ----------------------YTHGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVH 735 (802)
Q Consensus 678 ----------------------~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 735 (802)
.++.+||++|+++|.+|...|+.+.+... ...|+.+|
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~---------------------~~~~~~~~ 470 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG---------------------QVGLRIEH 470 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC---------------------CcCcCHHH
Confidence 15668899999999999999988876321 24799999
Q ss_pred HHHHHhh
Q 003691 736 FEESMKY 742 (802)
Q Consensus 736 f~~al~~ 742 (802)
+..|+..
T Consensus 471 l~~a~~~ 477 (512)
T TIGR03689 471 LLAAVLD 477 (512)
T ss_pred HHHHHHH
Confidence 9999865
No 41
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=361.12 Aligned_cols=386 Identities=38% Similarity=0.594 Sum_probs=301.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC-----CcEEEEechh
Q 003691 199 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFLINGPE 273 (802)
Q Consensus 199 ~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~-----~~~v~v~~~~ 273 (802)
..++|++|||++..+..+++++-+|+.||++|.++++.||+|||++||||||||+.|+++|..+. ..++.-.|.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 46899999999999999999999999999999999999999999999999999999999998874 2356778899
Q ss_pred hhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC
Q 003691 274 IMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 353 (802)
Q Consensus 274 l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~l 353 (802)
..++|+|+.+.+++.+|++|...+|+|+|+||||-+++.+......+...++..|+.+|+|+..++.|+|||+||+++.+
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~ 419 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAI 419 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcccc
Confidence 99999999999999999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhcccccc
Q 003691 354 DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 432 (802)
Q Consensus 354 d~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~ 432 (802)
|+++||+|||+++++++.|+.+.|..|+.++.++..-. ....+..++..+.||.|+|+++||.+|++.++++....+..
T Consensus 420 dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~ 499 (1080)
T KOG0732|consen 420 DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYS 499 (1080)
T ss_pred chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeec
Confidence 99999999999999999999999999999998876522 23457889999999999999999999999999887655443
Q ss_pred ccchhhHHhhhhccccchhhhcccccCCCCccceeeecccccc-ccc-ccccchhhhhhhhhh-------------cCcC
Q 003691 433 EDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVS-WED-IGGLDNVKRELQETV-------------QYPV 497 (802)
Q Consensus 433 ~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~~~~~~~-~~~-i~g~~~~k~~l~~~i-------------~~~~ 497 (802)
...... .......+...+|..|+....|+..+........++ .-. +.+.......++..+ .+..
T Consensus 500 s~~kl~-~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v 578 (1080)
T KOG0732|consen 500 SSDKLL-IDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLV 578 (1080)
T ss_pred cccccc-ccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHH
Confidence 332211 112234478889999999988887765332211111 000 110111111111111 1100
Q ss_pred CChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh-CCeEEEEeCcchhhhc-cCccHHHHHHHHHHHhhCCCeEEE
Q 003691 498 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLTMW-FGESEANVREIFDKARQSAPCVLF 575 (802)
Q Consensus 498 ~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~-~~~~i~v~~~~l~~~~-vg~se~~i~~lf~~a~~~~p~il~ 575 (802)
+..+..-.+.+-....+++.|..|.|-+.+..++-+.+ +.+......+.+++.- .+..+..|..+|-.|+...|||+|
T Consensus 579 ~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ 658 (1080)
T KOG0732|consen 579 RSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVF 658 (1080)
T ss_pred HhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceee
Confidence 00000001111122338899999999999999998877 4454444445554433 556688999999999999999999
Q ss_pred Ecccchhhhc
Q 003691 576 FDELDSIATQ 585 (802)
Q Consensus 576 iDEid~l~~~ 585 (802)
|-.+|..+..
T Consensus 659 ip~~d~w~~~ 668 (1080)
T KOG0732|consen 659 IPNVDEWARV 668 (1080)
T ss_pred ccchhhhhhc
Confidence 9999998754
No 42
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.9e-37 Score=342.16 Aligned_cols=250 Identities=50% Similarity=0.843 Sum_probs=230.1
Q ss_pred ecccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchh
Q 003691 469 VEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 548 (802)
Q Consensus 469 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~ 548 (802)
.+.|.+.|++++|+++.++.+.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|+.++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCC
Q 003691 549 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI 628 (802)
Q Consensus 549 ~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ 628 (802)
.+|+|+....++.+|+.++...|+||||||+|.++..|.......+....+.+.++|.+++++...+++.||+|||+++.
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 99999999999999999999999999999999998877654333333456778899999998877788999999999999
Q ss_pred CCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003691 629 IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIE 708 (802)
Q Consensus 629 ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~ 708 (802)
+|++++||||||+.|+|++|+.++|.+||+.++++..+..++++..+++.++||||+||.++|++|++.|+++.
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~------ 347 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE------ 347 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 99999999999999999999999999999999999988888999999999999999999999999999998764
Q ss_pred HHHhhcCCCcccccccccccccccHHHHHHHHhhc
Q 003691 709 RERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYA 743 (802)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 743 (802)
...|+.+||.+|++.+
T Consensus 348 -------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 -------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred -------------------CCccCHHHHHHHHHHh
Confidence 2369999999999875
No 43
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-37 Score=305.92 Aligned_cols=230 Identities=44% Similarity=0.799 Sum_probs=214.4
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 275 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~ 275 (802)
++-++++|.|+||..+++++|++.+++|+.||+.|-++||.||+|||+|||||||||.+||++|+..++.|+.|-|+++.
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCC----chhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC
Q 003691 276 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT----HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 351 (802)
Q Consensus 276 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~----~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~ 351 (802)
.+|+|+....++.+|+.|+....||+|+||+|++...+-.. .++++ |..-.|.+.+|++..++++-|+.+||+|+
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevq-rtmleli~qldgfdprgnikvlmatnrpd 327 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQ-RTMLELINQLDGFDPRGNIKVLMATNRPD 327 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHH-HHHHHHHHhccCCCCCCCeEEEeecCCCC
Confidence 99999999999999999999999999999999998776332 23343 44456778899999999999999999999
Q ss_pred CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhh
Q 003691 352 SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREK 426 (802)
Q Consensus 352 ~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~ 426 (802)
.+||+|.|+||+++.++|..|+.+.|..|+++|.+.+.+..++.++.++..+.+-+|+++..+|.+|.+.+++..
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar 402 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR 402 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988754
No 44
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-37 Score=336.49 Aligned_cols=228 Identities=43% Similarity=0.723 Sum_probs=221.1
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhcc
Q 003691 200 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (802)
Q Consensus 200 ~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~~~ 279 (802)
.+.|+||||+.++++.+++.+++|-+||.+|.++.+.-+.|||||||||||||.||.++|...+..|+.|.|++++++|.
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhc
Q 003691 280 GESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRR 359 (802)
Q Consensus 280 g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r 359 (802)
|.+++.+|.+|..|....|||||+||+|.++|+|+.+...+..|+++||++.|||...-.+|.|+++|.+|+.+||+|.|
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLR 822 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLR 822 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcC
Confidence 99999999999999999999999999999999999988899999999999999999988899999999999999999999
Q ss_pred cCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhc
Q 003691 360 FGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKM 427 (802)
Q Consensus 360 ~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~ 427 (802)
+||+|+.++.+.|++.+|++|++.+.+...+..++|++.+|..|+||+|+|+..|+..|.+.++.+..
T Consensus 823 pGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l 890 (952)
T KOG0735|consen 823 PGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEIL 890 (952)
T ss_pred CCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888876643
No 45
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.3e-36 Score=350.86 Aligned_cols=246 Identities=43% Similarity=0.780 Sum_probs=226.1
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhc
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 551 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~ 551 (802)
..++|+|++|++++++++.+.+.+ ++.++.+..++...++|+||+||||||||++|+++|++++.+|+.++++++...|
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 468999999999999999998776 6778889999999999999999999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCc
Q 003691 552 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDP 631 (802)
Q Consensus 552 vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 631 (802)
+|.....++.+|+.|+...||||||||||.++..|+.+.+........++++||.+||++....+++||+|||+++.||+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 99999999999999999999999999999999888764433344567899999999999988889999999999999999
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003691 632 ALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERER 711 (802)
Q Consensus 632 allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~ 711 (802)
|++||||||+.|+|++|+.++|.+||+.++++.++..++++..+|+.+.||||+||+++|++|+..|.++.
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~--------- 407 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK--------- 407 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC---------
Confidence 99999999999999999999999999999999888888999999999999999999999999998887654
Q ss_pred hhcCCCcccccccccccccccHHHHHHHHhhc
Q 003691 712 RKMENPEAMEEDEVDDVDEIKAVHFEESMKYA 743 (802)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 743 (802)
...|+.+||+.|+..+
T Consensus 408 ----------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 ----------------KATITMKEIDTAIDRV 423 (638)
T ss_pred ----------------CCCcCHHHHHHHHHHH
Confidence 2369999999999876
No 46
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.1e-35 Score=323.37 Aligned_cols=246 Identities=43% Similarity=0.723 Sum_probs=224.2
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003691 197 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 276 (802)
Q Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~ 276 (802)
+.++++|+||||++.+++.|++.+++|+.+|++|+.+|+.+++++|||||||||||++++++|++++.+++.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCc---hhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC
Q 003691 277 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 353 (802)
Q Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~l 353 (802)
.+.|+.+..++.+|..+....|+||||||+|.++.++.... +....+++.+++..++++....++.||++||+++.+
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 99999999999999999999999999999999987764322 122346677888889988777889999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhccccccc
Q 003691 354 DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLE 433 (802)
Q Consensus 354 d~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~~ 433 (802)
|+++.|+|||++.|+++.|+..+|..||+.++.++.+..++++..++..++||+|+||.++|++|++.++++.
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~------- 370 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN------- 370 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999999889999999999999999999999999999988764
Q ss_pred cchhhHHhhhhccccchhhhcccccC
Q 003691 434 DETIDAEVLNSMAVTNEHFQTALGTS 459 (802)
Q Consensus 434 ~~~~~~~~~~~~~v~~~~~~~al~~~ 459 (802)
...++.+||..|+..+
T Consensus 371 ----------~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 371 ----------RYVILPKDFEKGYKTV 386 (398)
T ss_pred ----------CCccCHHHHHHHHHHH
Confidence 2357788888887765
No 47
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=3.9e-35 Score=343.18 Aligned_cols=248 Identities=42% Similarity=0.788 Sum_probs=225.7
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhc
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 551 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~ 551 (802)
....|+++.|++..++++.+.+.+ ...+..+..++...++|++|+||||||||++++++|++++.+|+.++++++...|
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 356799999999999999998887 4556677778888899999999999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCc
Q 003691 552 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDP 631 (802)
Q Consensus 552 vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 631 (802)
+|.....++.+|+.++...||||||||||.++..|+.+.+.......+++++||.+||++....+++||+|||+|+.||+
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~ 305 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 305 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCH
Confidence 99999999999999999999999999999999988754333344567799999999999988889999999999999999
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003691 632 ALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERER 711 (802)
Q Consensus 632 allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~ 711 (802)
|++||||||+.|+|++||.++|.+||+.++++.++..++|+..+|+.|.||||+||.++|++|+..|.++.
T Consensus 306 Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~--------- 376 (644)
T PRK10733 306 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--------- 376 (644)
T ss_pred HHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred hhcCCCcccccccccccccccHHHHHHHHhhcCC
Q 003691 712 RKMENPEAMEEDEVDDVDEIKAVHFEESMKYARR 745 (802)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~ 745 (802)
...|+.+||++|+..+.+
T Consensus 377 ----------------~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 377 ----------------KRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred ----------------CCcccHHHHHHHHHHHhc
Confidence 237999999999987644
No 48
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-35 Score=331.65 Aligned_cols=228 Identities=46% Similarity=0.794 Sum_probs=214.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhc
Q 003691 199 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKL 278 (802)
Q Consensus 199 ~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~~ 278 (802)
..++|.|+.|+++++++|.|++.. |.+|+.|..+|+..|+|+||+||||||||.||+|+|++.+.+|+.++|++++..+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 458999999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEecccccccCCCC---C-CchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCC
Q 003691 279 AGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKRE---K-THGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID 354 (802)
Q Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~---~-~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld 354 (802)
.|....+++.+|+.++...|||+|+||||++...++ . ..++-....++||+..||++.....|+++++||+++.+|
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 999999999999999999999999999999999884 2 233455678899999999999998999999999999999
Q ss_pred HHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhc
Q 003691 355 PALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKM 427 (802)
Q Consensus 355 ~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~ 427 (802)
+++.|+|||++.|.+..|+..+|.+|++.|.+...+. +++++..++..|+||+|+||..+|.+|+..+.++..
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~ 538 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL 538 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc
Confidence 9999999999999999999999999999999999885 778899999999999999999999999999988653
No 49
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-35 Score=294.59 Aligned_cols=228 Identities=39% Similarity=0.692 Sum_probs=210.1
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003691 197 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 276 (802)
Q Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~ 276 (802)
+-+++.|+|+.|++.+++.|++.+.+|+++|++|.. +..|=++||||||||||||.||+++|.+.+..|+.|+.+++++
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS 204 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 204 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH
Confidence 347899999999999999999999999999999975 3456789999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccC-CCcEEEEEecCCCCCCCH
Q 003691 277 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVMGATNRPNSIDP 355 (802)
Q Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-~~~vivI~~tn~~~~ld~ 355 (802)
+|.|++++.++.+|+.|+.+.|+||||||||.+|..++...++..+|+...++-.|.+... ...|+|+|+||-|+.||.
T Consensus 205 KWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDs 284 (439)
T KOG0739|consen 205 KWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDS 284 (439)
T ss_pred HHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHH
Confidence 9999999999999999999999999999999999999988888999999999999988754 357999999999999999
Q ss_pred HhhccCCcceEEEeCCCCHHHHHHHHHHHhccCcc-ccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhc
Q 003691 356 ALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKM 427 (802)
Q Consensus 356 al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~ 427 (802)
++|| ||++.|++|.|+...|..+++.|+...+. ....|+.+++..|+||+|+|+..+++.|.++-+++..
T Consensus 285 AIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 285 AIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred HHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 9999 99999999999999999999999877653 3456899999999999999999999999888877643
No 50
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-35 Score=302.95 Aligned_cols=228 Identities=46% Similarity=0.755 Sum_probs=212.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhC-CCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 003691 199 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK 277 (802)
Q Consensus 199 ~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~-i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~ 277 (802)
-.++|+||||++.+++++++.+.+|+++|++|..-+ ..+++||||+||||||||++|+++|++.+..|+.|.++.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 468999999999999999999999999999996433 4789999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCc--EEEEEecCCCCCCCH
Q 003691 278 LAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH--VIVMGATNRPNSIDP 355 (802)
Q Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~--vivI~~tn~~~~ld~ 355 (802)
|.|+.++.++.+|.-|..-+|+||||||+|+++..|+...-+..+....++..+-|++..... |+|+|+||+|.++|+
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 999999999999999999999999999999999998655556667778889999999887655 999999999999999
Q ss_pred HhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhcc
Q 003691 356 ALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMD 428 (802)
Q Consensus 356 al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~ 428 (802)
++.| |+.+.++++.|+..+|..||+..++.-.+.+++|+..++..|+||+|+||..+|+.|+...+++...
T Consensus 247 AiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 247 AIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred HHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999999999999999999999988887654
No 51
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=5.6e-35 Score=350.93 Aligned_cols=212 Identities=19% Similarity=0.316 Sum_probs=180.0
Q ss_pred CChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhc----------cC--------------
Q 003691 498 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW----------FG-------------- 553 (802)
Q Consensus 498 ~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~----------vg-------------- 553 (802)
..+....++|+.+++||||+||||||||+||||+|++++.||+.|.+++++++| +|
T Consensus 1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 345566788999999999999999999999999999999999999999998765 22
Q ss_pred -----------------ccHH--HHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC--
Q 003691 554 -----------------ESEA--NVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-- 612 (802)
Q Consensus 554 -----------------~se~--~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-- 612 (802)
+++. .++.+|+.|++++||||||||||+++... .....+++||++||+..
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~~ 1767 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCER 1767 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhcccccc
Confidence 2223 38999999999999999999999997531 11224899999999863
Q ss_pred -CCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHH--hccCCCCCc-cCHHHHHHHccCCCHHHHH
Q 003691 613 -AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKAC--LRKSPISPD-VDLSALARYTHGFSGADIT 688 (802)
Q Consensus 613 -~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~--l~~~~~~~~-~~~~~la~~t~g~sg~di~ 688 (802)
...+|+||||||+|+.|||||+||||||+.|+++.|+..+|.+++... .+++++..+ +|+..+|+.|.|||||||.
T Consensus 1768 ~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLa 1847 (2281)
T CHL00206 1768 CSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLV 1847 (2281)
T ss_pred CCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHH
Confidence 356899999999999999999999999999999999999999999864 456666644 6899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhcCCCcccccccccccccccHHHHHHHHhhc
Q 003691 689 EVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYA 743 (802)
Q Consensus 689 ~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 743 (802)
++|++|+..|+++. ...|+..+|+.|+..+
T Consensus 1848 nLvNEAaliAirq~-------------------------ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1848 ALTNEALSISITQK-------------------------KSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred HHHHHHHHHHHHcC-------------------------CCccCHHHHHHHHHHH
Confidence 99999999999875 2257888888887643
No 52
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-35 Score=342.89 Aligned_cols=266 Identities=38% Similarity=0.682 Sum_probs=227.5
Q ss_pred ccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhC-----CeEEEEeCc
Q 003691 471 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGP 545 (802)
Q Consensus 471 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~-----~~~i~v~~~ 545 (802)
...+.|++|||++.+..+|++.+-.|+.+++.|..+++.+|+|+||+||||||||+.|+++|..+. ..|+.-+|+
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 357899999999999999999999999999999999999999999999999999999999999984 457778999
Q ss_pred chhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCC
Q 003691 546 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 625 (802)
Q Consensus 546 ~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~ 625 (802)
+.+++|+|+.++.++.+|+.|+...|+|+||||||.+++.|++.. ......++++||..|||+...+.|+||+||||
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq---Eqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ---EQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH---HHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 999999999999999999999999999999999999999996543 34567799999999999999999999999999
Q ss_pred CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q 003691 626 PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRACKYAIRENIE 704 (802)
Q Consensus 626 ~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~ 704 (802)
|+.+|||+.||||||+.+|||+|+.+.|.+|+.++.++..-. ...-+..||+.+.||-|+||+++|.+|++.++++...
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~P 495 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFP 495 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccC
Confidence 999999999999999999999999999999999999876422 1223578999999999999999999999999998643
Q ss_pred HhHHHHHhhcCCCcccccccccccccccHHHHHHHHhhcCCCCC
Q 003691 705 KDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSVS 748 (802)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~s~~ 748 (802)
....... +. . .+.. ...|..+||-.|+...-|+..
T Consensus 496 q~y~s~~-kl----~---~d~~-~ikV~~~~f~~A~~~i~ps~~ 530 (1080)
T KOG0732|consen 496 QIYSSSD-KL----L---IDVA-LIKVEVRDFVEAMSRITPSSR 530 (1080)
T ss_pred eeecccc-cc----c---ccch-hhhhhhHhhhhhhhccCCCCC
Confidence 3210000 00 0 0011 223888888888877766543
No 53
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=5.4e-34 Score=314.92 Aligned_cols=247 Identities=47% Similarity=0.780 Sum_probs=221.9
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 275 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~ 275 (802)
++.+.++|+||||++.+++.|++++.+|+.+|++|+++|+.++.++|||||||||||++|+++|++++..++.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchh---HHHHHHHHHHHhhhcccCCCcEEEEEecCCCCC
Q 003691 276 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGE---VERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS 352 (802)
Q Consensus 276 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~---~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ 352 (802)
+.+.|+.+..++.+|..+....|+|+||||+|.++.++...... ...+.+.+++..++++.....+.||++||+++.
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 99999999999999999999999999999999999876432211 123455677788888877778999999999999
Q ss_pred CCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhcccccc
Q 003691 353 IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDL 432 (802)
Q Consensus 353 ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~ 432 (802)
+|+++.|++||++.|+++.|+..+|.+||+.++.++.+..++++..++..++||+|+|+..+|++|++.++++.
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------ 408 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------ 408 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 99999999999999999999999999999999999999889999999999999999999999999999988764
Q ss_pred ccchhhHHhhhhccccchhhhcccccC
Q 003691 433 EDETIDAEVLNSMAVTNEHFQTALGTS 459 (802)
Q Consensus 433 ~~~~~~~~~~~~~~v~~~~~~~al~~~ 459 (802)
...++.+||..|+..+
T Consensus 409 -----------r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 409 -----------RMKVTQADFRKAKEKV 424 (438)
T ss_pred -----------CCccCHHHHHHHHHHH
Confidence 2347778888777654
No 54
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=7.6e-34 Score=339.83 Aligned_cols=267 Identities=49% Similarity=0.832 Sum_probs=236.8
Q ss_pred cCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 003691 198 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK 277 (802)
Q Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~ 277 (802)
.+.++|++|+|++..++.|++.+.+|+.+|++++.+++.++.++|||||||||||++|+++|++++.+++.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCC-chhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHH
Q 003691 278 LAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT-HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 356 (802)
Q Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~a 356 (802)
|.|+++..++.+|+.+....|+||||||+|.++++++.. ......+++++|+..|+++....+++||++||+++.+|++
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~a 606 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPA 606 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHh
Confidence 999999999999999999999999999999999887643 2345678999999999998888899999999999999999
Q ss_pred hhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhccccccccc-
Q 003691 357 LRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDE- 435 (802)
Q Consensus 357 l~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~~~~- 435 (802)
+.|+|||++.++++.|+.++|.+||+.+.+++++..++++..++..++||+|+|+..+|++|++.++++..........
T Consensus 607 llRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~ 686 (733)
T TIGR01243 607 LLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLE 686 (733)
T ss_pred hcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence 9999999999999999999999999999999999889999999999999999999999999999988865432211000
Q ss_pred hhhHHhhhhccccchhhhcccccCCCCcc
Q 003691 436 TIDAEVLNSMAVTNEHFQTALGTSNPSAL 464 (802)
Q Consensus 436 ~~~~~~~~~~~v~~~~~~~al~~~~ps~~ 464 (802)
...........++..||..++..++|+..
T Consensus 687 ~~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 687 VGEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred cccccccccCcccHHHHHHHHHHcCCCCC
Confidence 00001122456889999999999888743
No 55
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.6e-33 Score=311.77 Aligned_cols=251 Identities=49% Similarity=0.819 Sum_probs=225.6
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003691 197 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 276 (802)
Q Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~ 276 (802)
..++++|++|||++.+++.|++++.+|+.+|++|+.+|+.++.+||||||||||||++|+++|++++.+++.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCch---hHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC
Q 003691 277 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 353 (802)
Q Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~l 353 (802)
.+.|+.+..++.+|+.+....|++|||||+|.++.++..... ....+.+.+++..++++....++.||++||+++.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 999999999999999999999999999999999877653221 12234556777778887777789999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhccccccc
Q 003691 354 DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLE 433 (802)
Q Consensus 354 d~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~~ 433 (802)
|+++.|++||++.|+++.|+.++|.+||+.+++++.+..+.++..++..|+||+|+|+..+|++|++.++++.
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~------- 356 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD------- 356 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999998888999999999999999999999999999888753
Q ss_pred cchhhHHhhhhccccchhhhcccccCCCCcc
Q 003691 434 DETIDAEVLNSMAVTNEHFQTALGTSNPSAL 464 (802)
Q Consensus 434 ~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~ 464 (802)
...++.+||..|+..+.++..
T Consensus 357 ----------~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 357 ----------RTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred ----------CCCcCHHHHHHHHHHHhcccc
Confidence 234788899999888876543
No 56
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-33 Score=321.40 Aligned_cols=249 Identities=51% Similarity=0.833 Sum_probs=232.5
Q ss_pred cCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 003691 198 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK 277 (802)
Q Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~ 277 (802)
.+.++|+++||++..++.+++.+.+|+.+|+.|...++.++.++|||||||||||+||+++|.+++.+|+.+.+++++++
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHh
Q 003691 278 LAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPAL 357 (802)
Q Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al 357 (802)
|.|+++++++.+|+.|....|||||+||+|.+++.++...+....+++.+|+..|+++.....|+||++||+|+.+|+++
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~ 395 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPAL 395 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhh
Confidence 99999999999999999999999999999999999987666666899999999999999999999999999999999999
Q ss_pred hccCCcceEEEeCCCCHHHHHHHHHHHhccCc--cccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhccccccccc
Q 003691 358 RRFGRFDREIDIGVPDEVGRLEILRIHTKNMK--LAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDE 435 (802)
Q Consensus 358 ~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~--l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~~~~ 435 (802)
.|+|||+..++++.|+..+|.+|++.+++... +..++++..++..++||+|+|+..+|++|.+.++++..
T Consensus 396 lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~-------- 467 (494)
T COG0464 396 LRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR-------- 467 (494)
T ss_pred cccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc--------
Confidence 99999999999999999999999999998554 45789999999999999999999999999998887652
Q ss_pred hhhHHhhhhccccchhhhcccccCCCC
Q 003691 436 TIDAEVLNSMAVTNEHFQTALGTSNPS 462 (802)
Q Consensus 436 ~~~~~~~~~~~v~~~~~~~al~~~~ps 462 (802)
...++..||..+++.+.|+
T Consensus 468 --------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 468 --------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred --------cCCccHHHHHHHHHhcCCC
Confidence 2357889999999887776
No 57
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=3.2e-32 Score=324.61 Aligned_cols=444 Identities=23% Similarity=0.333 Sum_probs=301.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCcEEE
Q 003691 199 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFL 268 (802)
Q Consensus 199 ~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~v~ 268 (802)
.+-.++++.|.+++++++.+.+.. ....+++|+||||||||++++.+|..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 455788899999999887766642 235689999999999999999999987 667888
Q ss_pred Eechhhh--hhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEe
Q 003691 269 INGPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGA 346 (802)
Q Consensus 269 v~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~ 346 (802)
+++..+. .++.|+++++++.+|+.+....++||||||+|.++..+....+..+ +.+.|...+ .++.+.+||+
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~--~~~~L~~~l----~~g~i~~Iga 317 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD--ASNLLKPAL----SSGKLRCIGS 317 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH--HHHHHHHHH----hCCCeEEEEe
Confidence 9988887 4788999999999999998778999999999999876543222221 223344444 3568999999
Q ss_pred cCCC-----CCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccC----cc-ccchhhHHHHhhcCCCchHH-----H
Q 003691 347 TNRP-----NSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNM----KL-AEDVDLERVAKDTHGYVGSD-----L 411 (802)
Q Consensus 347 tn~~-----~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~----~l-~~~~~l~~la~~t~g~~~~d-----l 411 (802)
|+.. -..|+++.| ||. .+.++.|+.+++.+||+.....+ .+ ..+..+..++..++.|.+.. .
T Consensus 318 Tt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ka 394 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKA 394 (731)
T ss_pred cCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHH
Confidence 9863 257999999 895 69999999999999999655432 11 23445677777777775432 3
Q ss_pred HHHHHHHHHHhHHhhccccccccchhhHHhhhhccccchhhhcccccCCCCccc-------eeeecccccccccccccch
Q 003691 412 AALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALR-------ETVVEVPNVSWEDIGGLDN 484 (802)
Q Consensus 412 ~~l~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~-------~~~~~~~~~~~~~i~g~~~ 484 (802)
..++++|+....-+... .....++..++..++.....-... +........-...|.|+++
T Consensus 395 i~lld~a~a~~~~~~~~-------------~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ 461 (731)
T TIGR02639 395 IDVIDEAGASFRLRPKA-------------KKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDE 461 (731)
T ss_pred HHHHHHhhhhhhcCccc-------------ccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHH
Confidence 44555554322111000 012235555555554433110000 0001111122334566666
Q ss_pred hhhhhhhhhcCcCCChhhhhhccCC----CCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhh-----------
Q 003691 485 VKRELQETVQYPVEHPEKFEKFGMS----PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT----------- 549 (802)
Q Consensus 485 ~k~~l~~~i~~~~~~~~~~~~~~~~----~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~----------- 549 (802)
+.+.+.+.+... +.|+. |...++|+||||||||+||+++|..++.+++.++++++..
T Consensus 462 ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 462 AIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred HHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC
Confidence 666665554421 12322 2234899999999999999999999999999999988743
Q ss_pred -hccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC---------CCCcEEE
Q 003691 550 -MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN---------AKKTVFI 619 (802)
Q Consensus 550 -~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~v 619 (802)
.|+|..+ .+.+.+..+..+.+|+||||||.+ ...+.+.||+.||... ...+.+|
T Consensus 534 ~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka--------------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ii 597 (731)
T TIGR02639 534 PGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKA--------------HPDIYNILLQVMDYATLTDNNGRKADFRNVIL 597 (731)
T ss_pred CCCcccch--hhHHHHHHHhCCCeEEEEechhhc--------------CHHHHHHHHHhhccCeeecCCCcccCCCCCEE
Confidence 2344322 234555666777899999999986 3568899999998642 1346889
Q ss_pred EEecCCCC-------------------------CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccC-------CCC
Q 003691 620 IGATNRPD-------------------------IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS-------PIS 667 (802)
Q Consensus 620 i~aTn~~~-------------------------~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~-------~~~ 667 (802)
|+|||... .+.|.++. |||.+|.|.+++.++..+|++..+++. .+.
T Consensus 598 i~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~ 675 (731)
T TIGR02639 598 IMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIK 675 (731)
T ss_pred EECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 99998742 25667775 999999999999999999999887532 111
Q ss_pred ---CccCHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHH
Q 003691 668 ---PDVDLSALARY--THGFSGADITEVCQRACKYAIRENI 703 (802)
Q Consensus 668 ---~~~~~~~la~~--t~g~sg~di~~~~~~a~~~a~~~~~ 703 (802)
++.-.+.|++. ...|..+.|+.+++.....++.+.+
T Consensus 676 l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 676 LELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred EEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 11124556653 3446678888888888877776654
No 58
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=1.9e-33 Score=294.15 Aligned_cols=220 Identities=20% Similarity=0.252 Sum_probs=172.4
Q ss_pred cccccc-cccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhcc
Q 003691 474 VSWEDI-GGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 552 (802)
Q Consensus 474 ~~~~~i-~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~v 552 (802)
.+|+++ +|+--.+..+...+....+. .+...++++|.+++||||||||||++|+++|++++.+|+.++++++.++|+
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~kn--~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIAKN--FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHHhh--hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 345555 56555555444443322111 222357899999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHhh-----CCCeEEEEcccchhhhccCCCCCCCCCchHHHH-HHHHHHhhcc------------CCC
Q 003691 553 GESEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVL-NQLLTEMDGM------------NAK 614 (802)
Q Consensus 553 g~se~~i~~lf~~a~~-----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl-~~lL~~ld~~------------~~~ 614 (802)
|++|+.|+++|+.|+. ..||||||||||++++.|+... .....+++ .+||+.||+. ...
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~---~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~ 266 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ---YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEI 266 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC---cchHHHHHHHHHHHHhcCCccccccccccccccC
Confidence 9999999999999976 4699999999999999987432 23445555 8999999863 235
Q ss_pred CcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccC----CCHHHHHHH
Q 003691 615 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG----FSGADITEV 690 (802)
Q Consensus 615 ~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g----~sg~di~~~ 690 (802)
.+|+||+|||+|+.|||+|+||||||+.+ +.|+.++|.+||+.++++..++ ..|+..|+..+.| |+||--..+
T Consensus 267 ~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~ 343 (413)
T PLN00020 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARV 343 (413)
T ss_pred CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHH
Confidence 67999999999999999999999999864 5899999999999999998876 4677888877655 566655555
Q ss_pred HHHHHHHHHHH
Q 003691 691 CQRACKYAIRE 701 (802)
Q Consensus 691 ~~~a~~~a~~~ 701 (802)
..++...-+.+
T Consensus 344 yd~~v~~~i~~ 354 (413)
T PLN00020 344 YDDEVRKWIAE 354 (413)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 59
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-33 Score=311.35 Aligned_cols=229 Identities=47% Similarity=0.786 Sum_probs=216.2
Q ss_pred cCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 003691 198 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK 277 (802)
Q Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~ 277 (802)
-..++|.|+.|.++.++++.++|+. ++.|..|..+|..-|+|+||+||||||||+|||++|++.+.+|+.++|+++...
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 3568999999999999999999996 899999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCC---chhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCC
Q 003691 278 LAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID 354 (802)
Q Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld 354 (802)
++|....++|.+|.+++++.|||+||||+|++..+++.. ..+..+...+||+..||++..+..|+++++||+|+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 999999999999999999999999999999999988643 23445578899999999999888999999999999999
Q ss_pred HHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhc
Q 003691 355 PALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKM 427 (802)
Q Consensus 355 ~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~ 427 (802)
++|.|+|||+++|.++.||...|.+|++.|.++.++..++++..+|+.|.||+|+|+..++.+|+..+.++..
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~ 375 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK 375 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887653
No 60
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-31 Score=311.88 Aligned_cols=448 Identities=21% Similarity=0.300 Sum_probs=294.0
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEe
Q 003691 201 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFLIN 270 (802)
Q Consensus 201 ~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~v~v~ 270 (802)
=.++.+.|.++.+.++.+.+.. ....++||+||||||||++++.++..+ +..++.++
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 3567799999998888876653 235678999999999999999999864 34455555
Q ss_pred chhhh--hhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecC
Q 003691 271 GPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATN 348 (802)
Q Consensus 271 ~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn 348 (802)
...++ ..+.|+.+.+++.+|..+....+.||||||+|.++..+....+.. .+.+.|... ..++.+.+|++|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~--d~~nlLkp~----L~~g~i~vIgATt 323 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV--DAANLIKPL----LSSGKIRVIGSTT 323 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHH--HHHHHHHHH----HhCCCeEEEecCC
Confidence 55555 457889999999999999888889999999999987764322222 122223333 3467899999999
Q ss_pred CCC-----CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccch-----hhHHHHhhcCCC-----chHHHHH
Q 003691 349 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDV-----DLERVAKDTHGY-----VGSDLAA 413 (802)
Q Consensus 349 ~~~-----~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~-----~l~~la~~t~g~-----~~~dl~~ 413 (802)
.++ ..|+++.| ||. .|.++.|+.+++..||+.+..++....++ .+...+..+..| .+.....
T Consensus 324 ~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaid 400 (758)
T PRK11034 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_pred hHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHH
Confidence 764 57999998 995 79999999999999999876655433332 233344444443 3445667
Q ss_pred HHHHHHHHhHHhhccccccccchhhHHhhhhccccchhhhcccccCC--CCc-cc----eeeecccccccccccccchhh
Q 003691 414 LCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSN--PSA-LR----ETVVEVPNVSWEDIGGLDNVK 486 (802)
Q Consensus 414 l~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~--ps~-~~----~~~~~~~~~~~~~i~g~~~~k 486 (802)
++.+|+....-... .. ....++..++.+.+.... |.. +. +........--..|.|++++.
T Consensus 401 lldea~a~~~~~~~-----~~--------~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai 467 (758)
T PRK11034 401 VIDEAGARARLMPV-----SK--------RKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAI 467 (758)
T ss_pred HHHHHHHhhccCcc-----cc--------cccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHH
Confidence 78877653211000 00 011233344433332221 000 00 000111111223478999998
Q ss_pred hhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhh-----hccCccHH----
Q 003691 487 RELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-----MWFGESEA---- 557 (802)
Q Consensus 487 ~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~-----~~vg~se~---- 557 (802)
+.+.+.+....... .. ..+|...+||+||||||||++|+++|..++.+|+.++++++.. +++|....
T Consensus 468 ~~l~~~i~~~~~gl---~~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~ 543 (758)
T PRK11034 468 EALTEAIKMSRAGL---GH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGF 543 (758)
T ss_pred HHHHHHHHHHhccc---cC-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccc
Confidence 88888775321100 00 1123345999999999999999999999999999999988642 23332211
Q ss_pred -HHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC---------CCCcEEEEEecCCC-
Q 003691 558 -NVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRP- 626 (802)
Q Consensus 558 -~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~- 626 (802)
.-+.+.+..+..+.+|+||||||.+. ..+.+.||+.||... ...+++||+|||.-
T Consensus 544 ~~~g~L~~~v~~~p~sVlllDEieka~--------------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~ 609 (758)
T PRK11034 544 DQGGLLTDAVIKHPHAVLLLDEIEKAH--------------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGV 609 (758)
T ss_pred cccchHHHHHHhCCCcEEEeccHhhhh--------------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCH
Confidence 11234444556667999999999973 458899999998531 12478899999932
Q ss_pred ------------------------CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccC-------CCCCccC---H
Q 003691 627 ------------------------DIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS-------PISPDVD---L 672 (802)
Q Consensus 627 ------------------------~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~-------~~~~~~~---~ 672 (802)
..+.|.++. |+|.+|.|++++.++..+|+...+.+. ++.-.++ +
T Consensus 610 ~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~ 687 (758)
T PRK11034 610 RETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEAR 687 (758)
T ss_pred HHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHH
Confidence 125678886 999999999999999999998766422 2222222 3
Q ss_pred HHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHH
Q 003691 673 SALARYT--HGFSGADITEVCQRACKYAIRENI 703 (802)
Q Consensus 673 ~~la~~t--~g~sg~di~~~~~~a~~~a~~~~~ 703 (802)
+.|++.. ..|-.+.|+.++++-....+.+.+
T Consensus 688 ~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 688 DWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 4555432 234457888888887777776654
No 61
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.98 E-value=8.3e-31 Score=289.35 Aligned_cols=245 Identities=53% Similarity=0.864 Sum_probs=217.3
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003691 197 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 276 (802)
Q Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~ 276 (802)
..+.++|++|+|++++++.|++++.+|+.+|+.|..+|+.++.++||+||||||||++|+++|+.++..++.+.+.++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 44788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCch---hHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC
Q 003691 277 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 353 (802)
Q Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~l 353 (802)
.+.|+....++.+|+.+....|++|||||+|.++.++..... ....+.+.+++..++++....++.||++||+++.+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 999999999999999999999999999999999876543221 12234456677777777666789999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhccccccc
Q 003691 354 DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLE 433 (802)
Q Consensus 354 d~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~~ 433 (802)
|+++.+++||++.++++.|+..+|.+|++.+..++.+..+.++..++..++||+|+|+..+|++|++.++++.
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~------- 347 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE------- 347 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-------
Confidence 9999999999999999999999999999999999888888899999999999999999999999999988754
Q ss_pred cchhhHHhhhhccccchhhhccccc
Q 003691 434 DETIDAEVLNSMAVTNEHFQTALGT 458 (802)
Q Consensus 434 ~~~~~~~~~~~~~v~~~~~~~al~~ 458 (802)
...++.+||.+|+..
T Consensus 348 ----------~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 348 ----------RDYVTMDDFIKAVEK 362 (364)
T ss_pred ----------CCccCHHHHHHHHHH
Confidence 234677788777654
No 62
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=5.3e-31 Score=295.53 Aligned_cols=242 Identities=24% Similarity=0.402 Sum_probs=210.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhc
Q 003691 199 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKL 278 (802)
Q Consensus 199 ~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~~ 278 (802)
++.+|++|||++..++.+++.... ++....++|+.++++||||||||||||++|+++|++++.+++.+++..+.+.+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 467899999999999988765432 23455678999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCC-CchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHh
Q 003691 279 AGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREK-THGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPAL 357 (802)
Q Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~-~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al 357 (802)
.|+++.+++.+|+.+....||||||||+|.++.++.. ..+....++..+++++|+.. ...|+||+|||+++.+|+++
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~--~~~V~vIaTTN~~~~Ld~al 377 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK--KSPVFVVATANNIDLLPLEI 377 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC--CCceEEEEecCChhhCCHHH
Confidence 9999999999999999999999999999999875432 33456678889999988753 45799999999999999999
Q ss_pred hccCCcceEEEeCCCCHHHHHHHHHHHhccCcc--ccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhccccccccc
Q 003691 358 RRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL--AEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDE 435 (802)
Q Consensus 358 ~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l--~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~~~~ 435 (802)
.|+|||++.++++.|+.++|.+||+.++++... ..+.++..++..|+||+|+||..+|.+|...+..+.
T Consensus 378 lR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~--------- 448 (489)
T CHL00195 378 LRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK--------- 448 (489)
T ss_pred hCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 999999999999999999999999999887643 246789999999999999999999999988776432
Q ss_pred hhhHHhhhhccccchhhhcccccCCCCc
Q 003691 436 TIDAEVLNSMAVTNEHFQTALGTSNPSA 463 (802)
Q Consensus 436 ~~~~~~~~~~~v~~~~~~~al~~~~ps~ 463 (802)
..++.+|+..++..+.|.+
T Consensus 449 ---------~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 449 ---------REFTTDDILLALKQFIPLA 467 (489)
T ss_pred ---------CCcCHHHHHHHHHhcCCCc
Confidence 2467889999999998865
No 63
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=8.6e-31 Score=300.19 Aligned_cols=244 Identities=45% Similarity=0.752 Sum_probs=219.2
Q ss_pred cCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 003691 198 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK 277 (802)
Q Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~ 277 (802)
.+.++|+||+|++.+++++++++.. +.+|+.+.+++..+++++||+||||||||++++++|++++.+++.++++++.+.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 4678999999999999999999986 899999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCC---chhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCC
Q 003691 278 LAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID 354 (802)
Q Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld 354 (802)
+.|.....++.+|+.+....|+||||||+|.++.+++.. ......+++++|+..|+++.....++||++||+++.+|
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld 207 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLD 207 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcC
Confidence 999999999999999999999999999999999877542 12334577889999999998888999999999999999
Q ss_pred HHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhcccccccc
Q 003691 355 PALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLED 434 (802)
Q Consensus 355 ~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~~~ 434 (802)
+++.|++||++.++++.|+.++|.+|++.++++..+..+.++..++..+.||+++|+..+|++|+..+.++.
T Consensus 208 ~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~-------- 279 (495)
T TIGR01241 208 PALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN-------- 279 (495)
T ss_pred HHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--------
Confidence 999999999999999999999999999999988887778889999999999999999999999988766543
Q ss_pred chhhHHhhhhccccchhhhcccccC
Q 003691 435 ETIDAEVLNSMAVTNEHFQTALGTS 459 (802)
Q Consensus 435 ~~~~~~~~~~~~v~~~~~~~al~~~ 459 (802)
...++.+++..++..+
T Consensus 280 ---------~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 280 ---------KTEITMNDIEEAIDRV 295 (495)
T ss_pred ---------CCCCCHHHHHHHHHHH
Confidence 2246677777777654
No 64
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-31 Score=268.39 Aligned_cols=231 Identities=42% Similarity=0.762 Sum_probs=208.3
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 275 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~ 275 (802)
+.+.+++|+.+||+-.++..+++.+++|+..|++|..+||.+|.+++||||||+|||.+|+++|..++..++.+..+.+.
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHH---HHHHHHHHhhhcccCCCcEEEEEecCCCCC
Q 003691 276 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVER---RIVSQLLTLMDGLKSRAHVIVMGATNRPNS 352 (802)
Q Consensus 276 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~---~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ 352 (802)
++|.|++...+|+.|..|....||++|+||||++...+......-++ +.+-.|++.|++...-.+|-+|.|||+|+.
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT 283 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc
Confidence 99999999999999999999999999999999999876432222223 333445666777777789999999999999
Q ss_pred CCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhh
Q 003691 353 IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREK 426 (802)
Q Consensus 353 ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~ 426 (802)
|||+|.|+||+++.+++|.|++..|+.|++.|...+......+.+.+.+..+||.|+|+...|++|.+.+.+..
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~ 357 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE 357 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh
Confidence 99999999999999999999999999999999988887778888999999999999999999999987666543
No 65
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=3.3e-30 Score=288.30 Aligned_cols=222 Identities=43% Similarity=0.715 Sum_probs=195.7
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 265 (802)
+..++++|++|||++.++++|++.+.+|+.+|++|..+|+.+++++|||||||||||++++++|+.++..
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 3557899999999999999999999999999999999999999999999999999999999999998543
Q ss_pred EEEEechhhhhhccchhHHHHHHHHHHHHhc----CCeEEEecccccccCCCCCC-chhHHHHHHHHHHHhhhcccCCCc
Q 003691 266 FFLINGPEIMSKLAGESESNLRKAFEEAEKN----APSIIFIDELDSIAPKREKT-HGEVERRIVSQLLTLMDGLKSRAH 340 (802)
Q Consensus 266 ~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~ 340 (802)
++.+.++++.++|.|+++..++.+|+.+... .|+|+||||+|.++.+++.. .++.+.+++.+|++.|+++....+
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ 333 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDN 333 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCc
Confidence 5667788999999999999999999988763 69999999999999887643 356678889999999999988889
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcc-CccccchhhHHHHhhcCCCchHHHHHHHHHHH
Q 003691 341 VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN-MKLAEDVDLERVAKDTHGYVGSDLAALCTEAA 419 (802)
Q Consensus 341 vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~-~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~ 419 (802)
++||++||+++.||+++.|+|||+..|+++.|+.++|.+||+.++.. +++ + .....+.|+.++++.++++++.
T Consensus 334 ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l--~----~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 334 VIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL--D----ADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred eEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc--h----HHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988754 343 1 2234578999999999999886
Q ss_pred HHhH
Q 003691 420 LQCI 423 (802)
Q Consensus 420 ~~~~ 423 (802)
...+
T Consensus 408 ~~~~ 411 (512)
T TIGR03689 408 DHLY 411 (512)
T ss_pred HHHh
Confidence 5444
No 66
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=1.3e-29 Score=292.81 Aligned_cols=243 Identities=41% Similarity=0.728 Sum_probs=216.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhc
Q 003691 199 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKL 278 (802)
Q Consensus 199 ~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~~ 278 (802)
..++|+|++|+++.++.+.+++.. +.+|+.|..++...++++||+||||||||++|+++|++.+.+++.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 468999999999999999999876 8889999999999999999999999999999999999999999999999998888
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCC---chhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCH
Q 003691 279 AGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDP 355 (802)
Q Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~ 355 (802)
.|.....++.+|+.+....|+||||||+|.++..++.. .......++.+|+..|+++..+.+++||++||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 88888899999999999999999999999998776432 223345677889999999888889999999999999999
Q ss_pred HhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhccccccccc
Q 003691 356 ALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDE 435 (802)
Q Consensus 356 al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~~~~ 435 (802)
++.|++||++.+.++.|+.++|.+||+.++++..+..+.++..++..+.||+++||..++++|+..+.++..
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~-------- 408 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK-------- 408 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC--------
Confidence 999999999999999999999999999999887777888999999999999999999999999887765432
Q ss_pred hhhHHhhhhccccchhhhcccccC
Q 003691 436 TIDAEVLNSMAVTNEHFQTALGTS 459 (802)
Q Consensus 436 ~~~~~~~~~~~v~~~~~~~al~~~ 459 (802)
..++.+++..|+..+
T Consensus 409 ---------~~It~~dl~~Ai~rv 423 (638)
T CHL00176 409 ---------ATITMKEIDTAIDRV 423 (638)
T ss_pred ---------CCcCHHHHHHHHHHH
Confidence 235667777776544
No 67
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.96 E-value=3.9e-27 Score=282.31 Aligned_cols=455 Identities=20% Similarity=0.303 Sum_probs=282.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC----------CcEEE
Q 003691 199 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFL 268 (802)
Q Consensus 199 ~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~----------~~~v~ 268 (802)
.+-.++++.|.++.+.++.+.+.. ....+++|+||||||||++++.||..+. ..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 456788999999987766655432 2345799999999999999999999863 34566
Q ss_pred Eechhhh--hhccchhHHHHHHHHHHHHh-cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEE
Q 003691 269 INGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMG 345 (802)
Q Consensus 269 v~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~ 345 (802)
++...+. ..+.|+++.+++.+|+.+.. ..+.||||||+|.+...++.. +..+ ..+.|... -.++.+.+||
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~-~~~d--~~n~Lkp~----l~~G~l~~Ig 321 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA-GQGD--AANLLKPA----LARGELRTIA 321 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc-cccc--HHHHhhHH----hhCCCeEEEE
Confidence 6666655 36789999999999999865 467899999999998765422 1111 22223333 3467899999
Q ss_pred ecCCCC-----CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCc----c-ccchhhHHHHhhcCCCchH-----H
Q 003691 346 ATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMK----L-AEDVDLERVAKDTHGYVGS-----D 410 (802)
Q Consensus 346 ~tn~~~-----~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~----l-~~~~~l~~la~~t~g~~~~-----d 410 (802)
+|+..+ .+|++|.| || ..|.++.|+.+++..||+.+.+.+. + ..+..+..++..+++|... .
T Consensus 322 aTT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDK 398 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDK 398 (852)
T ss_pred ecCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccH
Confidence 998643 57999999 89 5799999999999999876654432 1 1345577778888877542 2
Q ss_pred HHHHHHHHHHHh-HHhhccccc-----------------c--------ccc-h---h------------------hHHh-
Q 003691 411 LAALCTEAALQC-IREKMDVID-----------------L--------EDE-T---I------------------DAEV- 441 (802)
Q Consensus 411 l~~l~~~A~~~~-~~~~~~~~~-----------------~--------~~~-~---~------------------~~~~- 441 (802)
...|+.+|+... +........ . ... . . ..+.
T Consensus 399 AIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (852)
T TIGR03345 399 AVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKE 478 (852)
T ss_pred HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455543211 110000000 0 000 0 0 0000
Q ss_pred -hhh--------------------------------------------ccccchhhhcccccCC--CC-ccc----eeee
Q 003691 442 -LNS--------------------------------------------MAVTNEHFQTALGTSN--PS-ALR----ETVV 469 (802)
Q Consensus 442 -~~~--------------------------------------------~~v~~~~~~~al~~~~--ps-~~~----~~~~ 469 (802)
... ..++..++...+.... |- .+. +...
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~ 558 (852)
T TIGR03345 479 LVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVL 558 (852)
T ss_pred HHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHH
Confidence 000 0000000000000000 00 000 0000
Q ss_pred cccccccccccccchhhhhhhhhhcCcCCChhhhhhccC---CCCce-eeeecCCCCchhHHHHHHHHHh---CCeEEEE
Q 003691 470 EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGM---SPSKG-VLFYGPPGCGKTLLAKAIANEC---QANFISV 542 (802)
Q Consensus 470 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~---~~~~g-ill~GppGtGKT~lakala~~~---~~~~i~v 542 (802)
.....--..+.|++...+.+.+.+.... .|+ ..|.| +||+||||+|||.+|+++|..+ ...++.+
T Consensus 559 ~l~~~L~~~v~GQ~~Av~~v~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~ 630 (852)
T TIGR03345 559 SLPDRLAERVIGQDHALEAIAERIRTAR--------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITI 630 (852)
T ss_pred HHHHHhcCeEcChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEE
Confidence 0001111345666666666655554321 122 12334 8999999999999999999998 4578999
Q ss_pred eCcchhh------------hccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhc
Q 003691 543 KGPELLT------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDG 610 (802)
Q Consensus 543 ~~~~l~~------------~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~ 610 (802)
+++++.. .|+|..+. +.+.+..++.+++||+||||+.. ...+.+.|++.||.
T Consensus 631 dmse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka--------------~~~v~~~Llq~ld~ 694 (852)
T TIGR03345 631 NMSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA--------------HPDVLELFYQVFDK 694 (852)
T ss_pred eHHHhhhhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc--------------CHHHHHHHHHHhhc
Confidence 9888743 25554432 23445556678899999999864 35688889999886
Q ss_pred cC---------CCCcEEEEEecCCCC-----------------------------CCCccccCCCCcceEEEecCCCHHH
Q 003691 611 MN---------AKKTVFIIGATNRPD-----------------------------IIDPALLRPGRLDQLIYIPLPDEAS 652 (802)
Q Consensus 611 ~~---------~~~~v~vi~aTn~~~-----------------------------~ld~allr~gRf~~~i~~~~p~~~~ 652 (802)
.. ...+.+||+|||... .+.|+++. |++ +|.|.+++.++
T Consensus 695 g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~ 771 (852)
T TIGR03345 695 GVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDV 771 (852)
T ss_pred ceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHH
Confidence 42 125789999999521 14577776 998 89999999999
Q ss_pred HHHHHHHHhccC--------CCCCccC---HHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHH
Q 003691 653 RLQIFKACLRKS--------PISPDVD---LSALARYTH--GFSGADITEVCQRACKYAIRENI 703 (802)
Q Consensus 653 r~~Il~~~l~~~--------~~~~~~~---~~~la~~t~--g~sg~di~~~~~~a~~~a~~~~~ 703 (802)
..+|++..+... ++.-.++ .+.|++... .|-.+.++.+++.-...++.+.+
T Consensus 772 l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 772 LAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 999998776432 2221222 445665542 24468888888887777776654
No 68
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.96 E-value=2.5e-27 Score=285.71 Aligned_cols=459 Identities=23% Similarity=0.342 Sum_probs=291.3
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCcEEEE
Q 003691 200 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFLI 269 (802)
Q Consensus 200 ~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~v~v 269 (802)
+-.++.+.|.+++++++.+++.. ....+++|+||||||||++++.||..+ +..++.+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34678899999999998887653 345689999999999999999999886 3568889
Q ss_pred echhhh--hhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEec
Q 003691 270 NGPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGAT 347 (802)
Q Consensus 270 ~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~t 347 (802)
+...+. .+|.|+++++++.+++.+....+.||||||+|.+....... +.+ .+.+.|...+ .++.+.+||+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-g~~--~~a~lLkp~l----~rg~l~~IgaT 314 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE-GAI--DAANILKPAL----ARGELQCIGAT 314 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC-Ccc--cHHHHhHHHH----hCCCcEEEEeC
Confidence 988876 46789999999999999988888999999999998765422 222 1222233333 46788999999
Q ss_pred CCCC-----CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcc----Ccc-ccchhhHHHHhhcCCCchH-----HHH
Q 003691 348 NRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN----MKL-AEDVDLERVAKDTHGYVGS-----DLA 412 (802)
Q Consensus 348 n~~~-----~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~----~~l-~~~~~l~~la~~t~g~~~~-----dl~ 412 (802)
+..+ ..|+++.+ ||. .+.++.|+.++...|++..... ..+ ..+..+..++..+.+|.+. ...
T Consensus 315 t~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkai 391 (821)
T CHL00095 315 TLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAI 391 (821)
T ss_pred CHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHH
Confidence 8654 46899998 885 5789999999998888754321 122 2334467777777777642 233
Q ss_pred HHHHHHHHHh-HHhhccccccc------------------cchhhH------------Hhh---------------hhcc
Q 003691 413 ALCTEAALQC-IREKMDVIDLE------------------DETIDA------------EVL---------------NSMA 446 (802)
Q Consensus 413 ~l~~~A~~~~-~~~~~~~~~~~------------------~~~~~~------------~~~---------------~~~~ 446 (802)
.++++|+... +.......... ...... ..+ ....
T Consensus 392 dlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (821)
T CHL00095 392 DLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPV 471 (821)
T ss_pred HHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCc
Confidence 4555554322 11000000000 000000 000 0011
Q ss_pred ccchhhhcccccCC--CCc-cce----eeecccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecC
Q 003691 447 VTNEHFQTALGTSN--PSA-LRE----TVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGP 519 (802)
Q Consensus 447 v~~~~~~~al~~~~--ps~-~~~----~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~Gp 519 (802)
++..++...+.... |.. +.. ........--+.|.|++.+.+.+...+...... +.. .-+|...+||+||
T Consensus 472 v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~g---l~~-~~~p~~~~lf~Gp 547 (821)
T CHL00095 472 VTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVG---LKN-PNRPIASFLFSGP 547 (821)
T ss_pred cCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhc---ccC-CCCCceEEEEECC
Confidence 23333332222111 000 000 000111111245778888777776665432110 000 1122234899999
Q ss_pred CCCchhHHHHHHHHHh---CCeEEEEeCcchhh------------hccCccHHHHHHHHHHHhhCCCeEEEEcccchhhh
Q 003691 520 PGCGKTLLAKAIANEC---QANFISVKGPELLT------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 584 (802)
Q Consensus 520 pGtGKT~lakala~~~---~~~~i~v~~~~l~~------------~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~ 584 (802)
+|||||+||+++|..+ ..+++.++++++.. .|+|..+ .+.+.+..+..+.+|++|||||.+
T Consensus 548 ~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka-- 623 (821)
T CHL00095 548 TGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA-- 623 (821)
T ss_pred CCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC--
Confidence 9999999999999987 35789999887632 2444332 234566677777799999999985
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHhhccC---------CCCcEEEEEecCCCCC---------------------------
Q 003691 585 QRGSSTGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRPDI--------------------------- 628 (802)
Q Consensus 585 ~r~~~~~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~~~--------------------------- 628 (802)
...+.+.||+.|+... ...+.+||+|||....
T Consensus 624 ------------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~ 691 (821)
T CHL00095 624 ------------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLS 691 (821)
T ss_pred ------------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHH
Confidence 3568899999998642 2357899999986421
Q ss_pred ----------CCccccCCCCcceEEEecCCCHHHHHHHHHHHhccC-------CCCCccC---HHHHHHH--ccCCCHHH
Q 003691 629 ----------IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS-------PISPDVD---LSALARY--THGFSGAD 686 (802)
Q Consensus 629 ----------ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~-------~~~~~~~---~~~la~~--t~g~sg~d 686 (802)
+.|.++. |+|.+|.|.+++.++..+|++..+.+. .+.-.++ ...|++. ...|-.+.
T Consensus 692 ~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~ 769 (821)
T CHL00095 692 NLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARP 769 (821)
T ss_pred HHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhh
Confidence 2345665 999999999999999999998777532 1111122 3456654 22344678
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003691 687 ITEVCQRACKYAIRENI 703 (802)
Q Consensus 687 i~~~~~~a~~~a~~~~~ 703 (802)
|+.++++-...++.+.+
T Consensus 770 l~r~i~~~i~~~l~~~~ 786 (821)
T CHL00095 770 LRRAIMRLLEDPLAEEV 786 (821)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888887777766654
No 69
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-28 Score=265.81 Aligned_cols=261 Identities=41% Similarity=0.653 Sum_probs=219.2
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003691 197 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 276 (802)
Q Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~ 276 (802)
...++.|+|++|++..++.+.+++.+|+.+|.+|..+. .+.+++||.||||+|||+|++++|.+.++.|+.++++.+.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 45679999999999999999999999999999998653 56789999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhccc--CCCcEEEEEecCCCCCCC
Q 003691 277 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK--SRAHVIVMGATNRPNSID 354 (802)
Q Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~~~~vivI~~tn~~~~ld 354 (802)
+|.|+.+..++.+|+-|+..+|+|+||||+|.++.++.....+..+++..+++-.+++.. ...+|+||||||.|+.+|
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 999999999999999999999999999999999999865555667777777666665543 345899999999999999
Q ss_pred HHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCc-cccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhccccccc
Q 003691 355 PALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMK-LAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLE 433 (802)
Q Consensus 355 ~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~-l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~~ 433 (802)
++++| ||.+.+++|.|+.+.|..+|+.++...+ ...+.++..+++.|+||++.|+.++|++|++.-++.......+
T Consensus 305 ea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~- 381 (428)
T KOG0740|consen 305 EAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDL- 381 (428)
T ss_pred HHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhh-
Confidence 99999 9999999999999999999998877653 3345789999999999999999999999998666544321010
Q ss_pred cchhhHHhhhhccccchhhhcccccCCCCcc
Q 003691 434 DETIDAEVLNSMAVTNEHFQTALGTSNPSAL 464 (802)
Q Consensus 434 ~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~ 464 (802)
..+ .......++..||..++..+.|+..
T Consensus 382 -~~~--~~~~~r~i~~~df~~a~~~i~~~~s 409 (428)
T KOG0740|consen 382 -EFI--DADKIRPITYPDFKNAFKNIKPSVS 409 (428)
T ss_pred -hhc--chhccCCCCcchHHHHHHhhccccC
Confidence 001 1112345677788888877776643
No 70
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=1e-27 Score=251.37 Aligned_cols=219 Identities=20% Similarity=0.291 Sum_probs=173.8
Q ss_pred CCCcccc-cChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhc
Q 003691 200 EVGYDDV-GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKL 278 (802)
Q Consensus 200 ~~~~~~i-~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~~ 278 (802)
..+|+++ ||+--...-+.+++.-.- ......+++++|.+++||||||||||++|+++|++++..++.++++++.++|
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 3456666 776655544443332100 1122336789999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHh-----cCCeEEEecccccccCCCCCCchhHHHHHH-HHHHHhhhcc------------cCCCc
Q 003691 279 AGESESNLRKAFEEAEK-----NAPSIIFIDELDSIAPKREKTHGEVERRIV-SQLLTLMDGL------------KSRAH 340 (802)
Q Consensus 279 ~g~~~~~l~~vf~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~v~-~~Ll~~ld~~------------~~~~~ 340 (802)
.|++++.++.+|+.|.. ..||||||||||++++.++.....+..+++ .+|+++||+. .....
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~ 268 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPR 268 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCC
Confidence 99999999999999975 469999999999999998765556655665 8999998863 23467
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCC----CchHHHHHHHH
Q 003691 341 VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHG----YVGSDLAALCT 416 (802)
Q Consensus 341 vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g----~~~~dl~~l~~ 416 (802)
|+||+|||+|+.||++|+|+|||++.+ ..|+.++|.+||+.+++...+. ..++..++..+.| |.|+--..+..
T Consensus 269 V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd 345 (413)
T PLN00020 269 VPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYD 345 (413)
T ss_pred ceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHH
Confidence 999999999999999999999999965 6899999999999999988775 4778888888876 45554444555
Q ss_pred HHHHHhH
Q 003691 417 EAALQCI 423 (802)
Q Consensus 417 ~A~~~~~ 423 (802)
++....+
T Consensus 346 ~~v~~~i 352 (413)
T PLN00020 346 DEVRKWI 352 (413)
T ss_pred HHHHHHH
Confidence 5444433
No 71
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=8.9e-28 Score=281.33 Aligned_cols=243 Identities=41% Similarity=0.708 Sum_probs=216.4
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhcc
Q 003691 200 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (802)
Q Consensus 200 ~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~~~ 279 (802)
...|+++.|++..++++.+++.+ +..|..+..++...+++++|+||||||||+++++++++++.+++.++++++...+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 45788999999999999999987 66788888888888999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCC---chhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHH
Q 003691 280 GESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 356 (802)
Q Consensus 280 g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~a 356 (802)
+.....++.+|+.+....|+|+||||+|.++.+++.. ......+++++|+..|+++.....+++|++||+++.+|++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 9999999999999999999999999999998877542 2234457888999999999888899999999999999999
Q ss_pred hhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhccccccccch
Q 003691 357 LRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDET 436 (802)
Q Consensus 357 l~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~~~~~~~~~~ 436 (802)
+.|++||++.+.++.|+.++|.+||+.++++.++..++++..++..+.||+|+|+..+|++|+..+.++.
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~---------- 376 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN---------- 376 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC----------
Confidence 9999999999999999999999999999999998888999999999999999999999999999887643
Q ss_pred hhHHhhhhccccchhhhcccccCC
Q 003691 437 IDAEVLNSMAVTNEHFQTALGTSN 460 (802)
Q Consensus 437 ~~~~~~~~~~v~~~~~~~al~~~~ 460 (802)
...++..++.+++..+.
T Consensus 377 -------~~~i~~~d~~~a~~~v~ 393 (644)
T PRK10733 377 -------KRVVSMVEFEKAKDKIM 393 (644)
T ss_pred -------CCcccHHHHHHHHHHHh
Confidence 22456677777665543
No 72
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.96 E-value=1.6e-26 Score=279.44 Aligned_cols=457 Identities=23% Similarity=0.359 Sum_probs=285.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCcEEE
Q 003691 199 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFL 268 (802)
Q Consensus 199 ~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~v~ 268 (802)
.+-.++.+.|.++.+.++.+.+.. ....+++|+||||||||++++.++..+ +.+++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 445778899999987777666543 335678999999999999999999886 456777
Q ss_pred Eechhhh--hhccchhHHHHHHHHHHHHh-cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEE
Q 003691 269 INGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMG 345 (802)
Q Consensus 269 v~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~ 345 (802)
++...+. ..|.|+.+.+++.+|..+.. ..+.||||||+|.+...+... +.. ...+.|.. ...++.+.+||
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-~~~--d~~~~Lk~----~l~~g~i~~Ig 307 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-GAM--DAGNMLKP----ALARGELHCIG 307 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-chh--HHHHHhch----hhhcCceEEEE
Confidence 7776665 46788999999999999865 358999999999998654322 111 12222322 23567899999
Q ss_pred ecCCCC-----CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-----cchhhHHHHhhcCCCchH-----H
Q 003691 346 ATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-----EDVDLERVAKDTHGYVGS-----D 410 (802)
Q Consensus 346 ~tn~~~-----~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-----~~~~l~~la~~t~g~~~~-----d 410 (802)
+|+..+ .+|+++.| ||. .+.++.|+.+++..||+.+..++... .+..+...+..+++|... .
T Consensus 308 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdk 384 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDK 384 (852)
T ss_pred eCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchH
Confidence 998763 57999999 895 58999999999999999876665432 233566667777777542 2
Q ss_pred HHHHHHHHHHHhHHh-------------hcccc-------ccccc------------hh--------------hHHh--h
Q 003691 411 LAALCTEAALQCIRE-------------KMDVI-------DLEDE------------TI--------------DAEV--L 442 (802)
Q Consensus 411 l~~l~~~A~~~~~~~-------------~~~~~-------~~~~~------------~~--------------~~~~--~ 442 (802)
...|+++|+...... ....+ ..... .+ ..+. .
T Consensus 385 Aidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (852)
T TIGR03346 385 AIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAI 464 (852)
T ss_pred HHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455544321100 00000 00000 00 0000 0
Q ss_pred ----------hh-------------------------------------------------ccccchhhhcccccCC--C
Q 003691 443 ----------NS-------------------------------------------------MAVTNEHFQTALGTSN--P 461 (802)
Q Consensus 443 ----------~~-------------------------------------------------~~v~~~~~~~al~~~~--p 461 (802)
.. ..++..++...+.... |
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip 544 (852)
T TIGR03346 465 QGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIP 544 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCC
Confidence 00 0001111111111000 0
Q ss_pred Cc-cc----eeeecccccccccccccchhhhhhhhhhcCcCCChhhhhhccC----CCCceeeeecCCCCchhHHHHHHH
Q 003691 462 SA-LR----ETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTLLAKAIA 532 (802)
Q Consensus 462 s~-~~----~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~gill~GppGtGKT~lakala 532 (802)
.. +. +.+......-...+.|++.+.+.+...+... ..|+ +|...+||+||||||||++|+++|
T Consensus 545 ~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La 616 (852)
T TIGR03346 545 VSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALA 616 (852)
T ss_pred cccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 00 00 0000000111334666666666665554421 1122 233459999999999999999999
Q ss_pred HHh---CCeEEEEeCcchhh-----h-------ccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCch
Q 003691 533 NEC---QANFISVKGPELLT-----M-------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAA 597 (802)
Q Consensus 533 ~~~---~~~~i~v~~~~l~~-----~-------~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~ 597 (802)
..+ +.+++.++++++.. . |+|..+ -+.+....+..+.+|+|||||+.+ .
T Consensus 617 ~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka--------------~ 680 (852)
T TIGR03346 617 EFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKA--------------H 680 (852)
T ss_pred HHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccC--------------C
Confidence 987 46789999887643 1 233222 133445555666789999999875 3
Q ss_pred HHHHHHHHHHhhccC---------CCCcEEEEEecCCCCC-------------------------CCccccCCCCcceEE
Q 003691 598 DRVLNQLLTEMDGMN---------AKKTVFIIGATNRPDI-------------------------IDPALLRPGRLDQLI 643 (802)
Q Consensus 598 ~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~~~-------------------------ld~allr~gRf~~~i 643 (802)
..+.+.||+.|+... ...+.+||+|||.... +.|.|+. |+|.++
T Consensus 681 ~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~Ii 758 (852)
T TIGR03346 681 PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIV 758 (852)
T ss_pred HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEE
Confidence 568899999987542 1356889999998321 3466775 999999
Q ss_pred EecCCCHHHHHHHHHHHhcc-------CCCCCccC---HHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHH
Q 003691 644 YIPLPDEASRLQIFKACLRK-------SPISPDVD---LSALARYT--HGFSGADITEVCQRACKYAIRENIE 704 (802)
Q Consensus 644 ~~~~p~~~~r~~Il~~~l~~-------~~~~~~~~---~~~la~~t--~g~sg~di~~~~~~a~~~a~~~~~~ 704 (802)
.|.+++.+...+|+...+.. ..+...++ .+.|++.. ..+..+.|++++++.....+.+.+-
T Consensus 759 vF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l 831 (852)
T TIGR03346 759 VFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKIL 831 (852)
T ss_pred ecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876642 11222222 45566542 2466789999999998888776543
No 73
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.95 E-value=2.7e-26 Score=276.09 Aligned_cols=454 Identities=22% Similarity=0.363 Sum_probs=273.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCcEEE
Q 003691 199 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFL 268 (802)
Q Consensus 199 ~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~v~ 268 (802)
.+-.++++.|.++.+.++.+.+.. ....+++|+||||||||++++.||..+ +..++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 445788899999987777666543 235679999999999999999999987 567778
Q ss_pred Eechhhh--hhccchhHHHHHHHHHHHHh-cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEE
Q 003691 269 INGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMG 345 (802)
Q Consensus 269 v~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~ 345 (802)
++...+. .++.|+.+.+++.+|+.... ..++||||||+|.+...+... +.++ ..+.|.. .-.++.+.+||
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~~~d--~~~~lkp----~l~~g~l~~Ig 312 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GAMD--AGNMLKP----ALARGELHCVG 312 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-cchh--HHHHhcc----hhhcCCCeEEE
Confidence 8777765 45789999999999998654 568899999999998765432 2221 2222332 33567899999
Q ss_pred ecCCCC-----CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-----cchhhHHHHhhcCCCch-----HH
Q 003691 346 ATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-----EDVDLERVAKDTHGYVG-----SD 410 (802)
Q Consensus 346 ~tn~~~-----~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-----~~~~l~~la~~t~g~~~-----~d 410 (802)
+|+..+ .+|+++.| ||. .|.++.|+.+++..||+.+..++... .+..+...+..++.|.. ..
T Consensus 313 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdk 389 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDK 389 (857)
T ss_pred cCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChH
Confidence 998876 47999999 896 58899999999999998776554322 12233344445555542 11
Q ss_pred HHHHHHHHHHHh-H------------Hhhc-------cccccccc------------h-------h-------hHH----
Q 003691 411 LAALCTEAALQC-I------------REKM-------DVIDLEDE------------T-------I-------DAE---- 440 (802)
Q Consensus 411 l~~l~~~A~~~~-~------------~~~~-------~~~~~~~~------------~-------~-------~~~---- 440 (802)
...++..++... + .+.. .....+.. . . ...
T Consensus 390 Ai~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el 469 (857)
T PRK10865 390 AIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASL 469 (857)
T ss_pred HHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222221100 0 0000 00000000 0 0 000
Q ss_pred --------hhhh-----------------------------------------------ccccchhhhcccccCC--CCc
Q 003691 441 --------VLNS-----------------------------------------------MAVTNEHFQTALGTSN--PSA 463 (802)
Q Consensus 441 --------~~~~-----------------------------------------------~~v~~~~~~~al~~~~--ps~ 463 (802)
.... ..++.+++...+.... |-.
T Consensus 470 ~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~ 549 (857)
T PRK10865 470 SGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVS 549 (857)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHCCCch
Confidence 0000 0000000000000000 000
Q ss_pred -c----ceeeecccccccccccccchhhhhhhhhhcCcCCChhhhhhccCC----CCceeeeecCCCCchhHHHHHHHHH
Q 003691 464 -L----RETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMS----PSKGVLFYGPPGCGKTLLAKAIANE 534 (802)
Q Consensus 464 -~----~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~----~~~gill~GppGtGKT~lakala~~ 534 (802)
+ .+.+......-...+.|++.+.+.+...+... ..++. |...++|+||||||||++|+++|..
T Consensus 550 ~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~ 621 (857)
T PRK10865 550 RMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred hhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 0 00000011111234556666655555554321 11222 2234899999999999999999988
Q ss_pred h---CCeEEEEeCcchhhh------------ccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHH
Q 003691 535 C---QANFISVKGPELLTM------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADR 599 (802)
Q Consensus 535 ~---~~~~i~v~~~~l~~~------------~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~ 599 (802)
+ +.+++.++++++... |+|..+ -+.+....+..+.++|||||++.+ ...
T Consensus 622 l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~--~g~l~~~v~~~p~~vLllDEieka--------------~~~ 685 (857)
T PRK10865 622 MFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE--GGYLTEAVRRRPYSVILLDEVEKA--------------HPD 685 (857)
T ss_pred hhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccch--hHHHHHHHHhCCCCeEEEeehhhC--------------CHH
Confidence 7 457899998876432 223222 122333344455589999999875 255
Q ss_pred HHHHHHHHhhccC---------CCCcEEEEEecCCC-------------------------CCCCccccCCCCcceEEEe
Q 003691 600 VLNQLLTEMDGMN---------AKKTVFIIGATNRP-------------------------DIIDPALLRPGRLDQLIYI 645 (802)
Q Consensus 600 vl~~lL~~ld~~~---------~~~~v~vi~aTn~~-------------------------~~ld~allr~gRf~~~i~~ 645 (802)
+.+.|++.|+... ...+.+||+|||.. ..+.|+|+. |+|.++.|
T Consensus 686 v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF 763 (857)
T PRK10865 686 VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVF 763 (857)
T ss_pred HHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEec
Confidence 7888888887531 12457899999973 124578887 99999999
Q ss_pred cCCCHHHHHHHHHHHhccC-------CCCCccC---HHHHHHHccCCC----HHHHHHHHHHHHHHHHHHHH
Q 003691 646 PLPDEASRLQIFKACLRKS-------PISPDVD---LSALARYTHGFS----GADITEVCQRACKYAIRENI 703 (802)
Q Consensus 646 ~~p~~~~r~~Il~~~l~~~-------~~~~~~~---~~~la~~t~g~s----g~di~~~~~~a~~~a~~~~~ 703 (802)
.+++.+....|++..+.+. .+.-.++ +..|+. .||+ .+.|+.+++.-....+.+.+
T Consensus 764 ~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~--~gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 764 HPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSE--NGYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHH--cCCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998777542 2222233 334443 3444 57888888887777666554
No 74
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=7.3e-28 Score=290.20 Aligned_cols=200 Identities=20% Similarity=0.278 Sum_probs=168.5
Q ss_pred ccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhc----------cc-----------
Q 003691 222 LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKL----------AG----------- 280 (802)
Q Consensus 222 ~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~~----------~g----------- 280 (802)
.|...+.....+|+.+++||||+||||||||.||++||++.+.+++.|+++++++.+ .|
T Consensus 1614 ~~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~ 1693 (2281)
T CHL00206 1614 FPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDI 1693 (2281)
T ss_pred CcccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccc
Confidence 344445567789999999999999999999999999999999999999999998644 11
Q ss_pred --------------------hh--HHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhccc--
Q 003691 281 --------------------ES--ESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-- 336 (802)
Q Consensus 281 --------------------~~--~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-- 336 (802)
.. ..+++.+|+.|+...||||||||||+++.+.. ....+.+|+..|++..
T Consensus 1694 ~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~ 1767 (2281)
T CHL00206 1694 DRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCER 1767 (2281)
T ss_pred ccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhcccccc
Confidence 11 23488999999999999999999999987621 1223688899998763
Q ss_pred -CCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHH--hccCccccc-hhhHHHHhhcCCCchHHHH
Q 003691 337 -SRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIH--TKNMKLAED-VDLERVAKDTHGYVGSDLA 412 (802)
Q Consensus 337 -~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~--~~~~~l~~~-~~l~~la~~t~g~~~~dl~ 412 (802)
...+|+||||||+|+.+|||+.|+|||++.|.++.|+..+|.+++..+ .+++.+..+ +++..+|..|.||+|+||+
T Consensus 1768 ~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLa 1847 (2281)
T CHL00206 1768 CSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLV 1847 (2281)
T ss_pred CCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHH
Confidence 345799999999999999999999999999999999999999988764 455555543 5789999999999999999
Q ss_pred HHHHHHHHHhHHhhc
Q 003691 413 ALCTEAALQCIREKM 427 (802)
Q Consensus 413 ~l~~~A~~~~~~~~~ 427 (802)
++|.+|++.++++..
T Consensus 1848 nLvNEAaliAirq~k 1862 (2281)
T CHL00206 1848 ALTNEALSISITQKK 1862 (2281)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999988754
No 75
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2e-26 Score=264.10 Aligned_cols=455 Identities=23% Similarity=0.343 Sum_probs=294.2
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCcEEEE
Q 003691 200 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFLI 269 (802)
Q Consensus 200 ~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~v~v 269 (802)
.-.++.+.|-++++.++.+.+.. ....+-+|+|+||+|||.++..||..+ +..++.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 45678899999998888777753 234567899999999999999999875 2345666
Q ss_pred echhhh--hhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEec
Q 003691 270 NGPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGAT 347 (802)
Q Consensus 270 ~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~t 347 (802)
+-..+. .+|.|+++++++.++++.....+.||||||+|.+........+.+ ...+.|... -.++.+-+||+|
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~--DAaNiLKPa----LARGeL~~IGAT 306 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAM--DAANLLKPA----LARGELRCIGAT 306 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccccc--chhhhhHHH----HhcCCeEEEEec
Confidence 655554 478999999999999999988899999999999987764322112 122223333 356788899888
Q ss_pred CCCC-----CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCcccc-----chhhHHHHhhcCCCc-----hHHHH
Q 003691 348 NRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAE-----DVDLERVAKDTHGYV-----GSDLA 412 (802)
Q Consensus 348 n~~~-----~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~-----~~~l~~la~~t~g~~-----~~dl~ 412 (802)
..-+ .-|++|.| || ..|.+..|+.++-..||+.+..++.... +.-+...+..++.|. +.-..
T Consensus 307 T~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAI 383 (786)
T COG0542 307 TLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAI 383 (786)
T ss_pred cHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHH
Confidence 6432 34899998 88 5689999999999999997665543222 223444444444443 33344
Q ss_pred HHHHHHHHHhHHhhcccccc------------ccch-------hhHHhhh---hc--------------cccchhhhccc
Q 003691 413 ALCTEAALQCIREKMDVIDL------------EDET-------IDAEVLN---SM--------------AVTNEHFQTAL 456 (802)
Q Consensus 413 ~l~~~A~~~~~~~~~~~~~~------------~~~~-------~~~~~~~---~~--------------~v~~~~~~~al 456 (802)
.++.+|+....-......++ +... ....... .. .++.+++...+
T Consensus 384 DLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Ia~vv 463 (786)
T COG0542 384 DLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVDEDDIAEVV 463 (786)
T ss_pred HHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhhccCHHHHHHHH
Confidence 55666543322110000000 0000 0000000 00 12223333322
Q ss_pred ccCC--CCc-c----ceeeecccccccccccccchhhhhhhhhhcCcCCChhhhhhccC----CCCceeeeecCCCCchh
Q 003691 457 GTSN--PSA-L----RETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKT 525 (802)
Q Consensus 457 ~~~~--ps~-~----~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~gill~GppGtGKT 525 (802)
.... |.. + ++.....++.--..+.|+++....+...|... +.|+ +|-..+||.||+|+|||
T Consensus 464 ~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~GPTGVGKT 535 (786)
T COG0542 464 ARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFLGPTGVGKT 535 (786)
T ss_pred HHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEeeCCCcccHH
Confidence 2211 110 0 11112222333445778888777776666532 2233 23335899999999999
Q ss_pred HHHHHHHHHhC---CeEEEEeCcchhh------------hccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCC
Q 003691 526 LLAKAIANECQ---ANFISVKGPELLT------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSST 590 (802)
Q Consensus 526 ~lakala~~~~---~~~i~v~~~~l~~------------~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~ 590 (802)
.||+++|..+. ..++.+++++++. .|||..+ =+.+-+..++.++||++||||+.
T Consensus 536 ELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEK--------- 604 (786)
T COG0542 536 ELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEK--------- 604 (786)
T ss_pred HHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhh---------
Confidence 99999999996 7899999999974 3676555 24566777888889999999988
Q ss_pred CCCCCchHHHHHHHHHHhhccC---------CCCcEEEEEecCCCC----------------------------CCCccc
Q 003691 591 GDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRPD----------------------------IIDPAL 633 (802)
Q Consensus 591 ~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~~----------------------------~ld~al 633 (802)
++..|++.||+.||... ..++.+||+|||--. .+.|++
T Consensus 605 -----AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEF 679 (786)
T COG0542 605 -----AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEF 679 (786)
T ss_pred -----cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHH
Confidence 46889999999999753 134789999998431 145777
Q ss_pred cCCCCcceEEEecCCCHHHHHHHHHHHhccC-------CCCCcc---CHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHH
Q 003691 634 LRPGRLDQLIYIPLPDEASRLQIFKACLRKS-------PISPDV---DLSALARYT--HGFSGADITEVCQRACKYAIRE 701 (802)
Q Consensus 634 lr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~-------~~~~~~---~~~~la~~t--~g~sg~di~~~~~~a~~~a~~~ 701 (802)
+. |+|.+|.|.+.+.+...+|++..+... .+.-.+ -...|++.. ..|-++-|+.++++-....+.+
T Consensus 680 LN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~ 757 (786)
T COG0542 680 LN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLAD 757 (786)
T ss_pred Hh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHH
Confidence 77 999999999999999999998777432 221111 134555432 2455667777777666655554
Q ss_pred H
Q 003691 702 N 702 (802)
Q Consensus 702 ~ 702 (802)
.
T Consensus 758 ~ 758 (786)
T COG0542 758 E 758 (786)
T ss_pred H
Confidence 4
No 76
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.2e-23 Score=209.97 Aligned_cols=188 Identities=30% Similarity=0.483 Sum_probs=150.6
Q ss_pred ccccccccchhhhhhhhhhcCcCCChhhhhhc-cCCCCceeeeecCCCCchhHHHHHHHHHhC---------CeEEEEeC
Q 003691 475 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKG 544 (802)
Q Consensus 475 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~gill~GppGtGKT~lakala~~~~---------~~~i~v~~ 544 (802)
-|+.+.--..+|+.|.......+...+.-... -+...+-+||+||||||||+|+|++|..+. ...+.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 47777767778887766544332222111111 123455699999999999999999999974 34699999
Q ss_pred cchhhhccCccHHHHHHHHHHHhhC-----CCeEEEEcccchhhhccCC-CCCCCCCchHHHHHHHHHHhhccCCCCcEE
Q 003691 545 PELLTMWFGESEANVREIFDKARQS-----APCVLFFDELDSIATQRGS-STGDAGGAADRVLNQLLTEMDGMNAKKTVF 618 (802)
Q Consensus 545 ~~l~~~~vg~se~~i~~lf~~a~~~-----~p~il~iDEid~l~~~r~~-~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~ 618 (802)
..+.++|+++|.+.+..+|++.... ..-.++|||+++++..|.+ ........+-|++|.+|++||.+....+|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 9999999999999999999987652 2346779999999998843 333334557899999999999999999999
Q ss_pred EEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccC
Q 003691 619 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS 664 (802)
Q Consensus 619 vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~ 664 (802)
+++|+|..+.||.|+.. |-|-+.|+++|+...|.+|++.++.++
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL 343 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEEL 343 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHH
Confidence 99999999999999998 999999999999999999999988653
No 77
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=5.1e-22 Score=210.52 Aligned_cols=215 Identities=23% Similarity=0.334 Sum_probs=166.6
Q ss_pred cccccccchhhhhhhhhhcCcCCChhhhhhccCCCC---ceeeeecCCCCchhHHHHHHHHHhC-------CeEEEEeCc
Q 003691 476 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPS---KGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGP 545 (802)
Q Consensus 476 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~---~gill~GppGtGKT~lakala~~~~-------~~~i~v~~~ 545 (802)
+++++|++++|+++.+.+.+ ..........|+.++ .+++|+||||||||++|+++|..+. .+++.++.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 45799999999999998877 334455566676554 2389999999999999999999862 358999999
Q ss_pred chhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCC
Q 003691 546 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 625 (802)
Q Consensus 546 ~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~ 625 (802)
++.+.|+|+++..++.+|+.+.. +||||||+|.+...++. ......+++.|+..|+.. .++++||++++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~~-----~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~ 170 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDNE-----RDYGSEAIEILLQVMENQ--RDDLVVIFAGYK 170 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCCc-----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCc
Confidence 99999999999889999988753 59999999998654321 235678899999999854 456888888874
Q ss_pred CC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCC--CCCccCHHHHHHH------ccCCC-HHHHHHHH
Q 003691 626 PD-----IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP--ISPDVDLSALARY------THGFS-GADITEVC 691 (802)
Q Consensus 626 ~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~--~~~~~~~~~la~~------t~g~s-g~di~~~~ 691 (802)
.. .++|++.+ ||+..|+|++|+.+++.+|++.++++.. ++++. ...+... ...|. ++++++++
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 32 34699998 9999999999999999999999997654 33322 3333332 23454 89999999
Q ss_pred HHHHHHHHHHHHH
Q 003691 692 QRACKYAIRENIE 704 (802)
Q Consensus 692 ~~a~~~a~~~~~~ 704 (802)
++|......+...
T Consensus 248 e~~~~~~~~r~~~ 260 (287)
T CHL00181 248 DRARMRQANRIFE 260 (287)
T ss_pred HHHHHHHHHHHHc
Confidence 9998877776643
No 78
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.4e-22 Score=213.51 Aligned_cols=220 Identities=20% Similarity=0.345 Sum_probs=170.4
Q ss_pred cccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhccC
Q 003691 474 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 553 (802)
Q Consensus 474 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~vg 553 (802)
-+|+.+.--.++|+.+.+-+....+..+-+++.|....+|-|||||||||||+++.|+|++++...+-+.-+++.
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~----- 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK----- 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-----
Confidence 678888888889999988888888899999999999999999999999999999999999999999888776652
Q ss_pred ccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCC---C-CchHHHHHHHHHHhhccCCC--CcEEEEEecCCCC
Q 003691 554 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDA---G-GAADRVLNQLLTEMDGMNAK--KTVFIIGATNRPD 627 (802)
Q Consensus 554 ~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~---~-~~~~~vl~~lL~~ld~~~~~--~~v~vi~aTn~~~ 627 (802)
.. ..++.+.-.+... +||+|++||+-+..|+...... . ....-.++-||+.+||+-+. +--|||.|||.++
T Consensus 273 ~n-~dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 273 LD-SDLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred Cc-HHHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 22 2388888776555 6999999999887665433211 1 12335689999999999654 3678999999999
Q ss_pred CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHcc--CCCHHHHHHHH-H-H-HHHHHHHHH
Q 003691 628 IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTH--GFSGADITEVC-Q-R-ACKYAIREN 702 (802)
Q Consensus 628 ~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~--g~sg~di~~~~-~-~-a~~~a~~~~ 702 (802)
.|||||+||||+|.+||++.-+.++-+.+++.++.--. +. .=++++.+..+ ..|+||+...+ . + .+..|+++.
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~-~h-~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~L 427 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE-DH-RLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGL 427 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC-Cc-chhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHH
Confidence 99999999999999999999999999999999885432 11 11334443332 26999997633 2 2 355555544
Q ss_pred H
Q 003691 703 I 703 (802)
Q Consensus 703 ~ 703 (802)
+
T Consensus 428 v 428 (457)
T KOG0743|consen 428 V 428 (457)
T ss_pred H
Confidence 3
No 79
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=2.9e-21 Score=203.52 Aligned_cols=214 Identities=21% Similarity=0.296 Sum_probs=159.8
Q ss_pred cccccccchhhhhhhhhhcCcCCChhhhhhccCCCC---ceeeeecCCCCchhHHHHHHHHHh-------CCeEEEEeCc
Q 003691 476 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPS---KGVLFYGPPGCGKTLLAKAIANEC-------QANFISVKGP 545 (802)
Q Consensus 476 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~---~gill~GppGtGKT~lakala~~~-------~~~~i~v~~~ 545 (802)
+++++|++.+|+.+++.+.|+... ......|+.++ .+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567999999999999998876433 22333455433 358999999999999999999875 2468899999
Q ss_pred chhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCC
Q 003691 546 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 625 (802)
Q Consensus 546 ~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~ 625 (802)
++.+.|+|++...++.+|+.+. .+||||||+|.+... . ........++.|++.|+.. ...+++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~--~----~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG--G----EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC--C----ccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 9999999999999999998875 369999999998631 1 1123466889999999864 345666666544
Q ss_pred CC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccC-HHHHHHHc---------cCCCHHHHHHH
Q 003691 626 PD-----IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYT---------HGFSGADITEV 690 (802)
Q Consensus 626 ~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-~~~la~~t---------~g~sg~di~~~ 690 (802)
.+ .++|++.+ ||+..|+||+|+.+++.+|++.++......-+.+ +..+++.. ..-+++.++++
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 33 37889998 9999999999999999999999997654432222 33443321 12467888888
Q ss_pred HHHHHHHHHHHHH
Q 003691 691 CQRACKYAIRENI 703 (802)
Q Consensus 691 ~~~a~~~a~~~~~ 703 (802)
+..|......+.+
T Consensus 231 ~e~a~~~~~~r~~ 243 (261)
T TIGR02881 231 IEKAIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHHHHh
Confidence 8888877766554
No 80
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=1.8e-21 Score=206.60 Aligned_cols=213 Identities=23% Similarity=0.327 Sum_probs=166.8
Q ss_pred cccccchhhhhhhhhhcCcCCChhhhhhccCCC---CceeeeecCCCCchhHHHHHHHHHhC-------CeEEEEeCcch
Q 003691 478 DIGGLDNVKRELQETVQYPVEHPEKFEKFGMSP---SKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPEL 547 (802)
Q Consensus 478 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~gill~GppGtGKT~lakala~~~~-------~~~i~v~~~~l 547 (802)
+++|++++|+++.+.+.+ ...++.+...|+.+ ..+++|+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998887 55666777777764 34799999999999999999998873 36999999999
Q ss_pred hhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCC-
Q 003691 548 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP- 626 (802)
Q Consensus 548 ~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~- 626 (802)
.+.|+|+++.+++.+|+.+.. ++|||||++.+...++. ......+++.|++.|+.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~-----~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc-----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 999999999999999998754 69999999998643321 235677889999999853 4577888887643
Q ss_pred -CC---CCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccC-HHHHHHHc------cCC-CHHHHHHHHHHH
Q 003691 627 -DI---IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYT------HGF-SGADITEVCQRA 694 (802)
Q Consensus 627 -~~---ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-~~~la~~t------~g~-sg~di~~~~~~a 694 (802)
+. ++|++.+ ||+..|+||+|+.+++..|++.++++....-+.+ ...+..+. +.+ ++++++++++.|
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 33 5899999 9999999999999999999999998764322211 33443331 233 589999999999
Q ss_pred HHHHHHHHH
Q 003691 695 CKYAIRENI 703 (802)
Q Consensus 695 ~~~a~~~~~ 703 (802)
......+..
T Consensus 250 ~~~~~~r~~ 258 (284)
T TIGR02880 250 RLRQANRLF 258 (284)
T ss_pred HHHHHHHHh
Confidence 877666653
No 81
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.2e-21 Score=199.46 Aligned_cols=184 Identities=30% Similarity=0.555 Sum_probs=147.9
Q ss_pred CCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhccCccHHHHHHHHHHHhhCCC-eEEEEcccchhhhccC
Q 003691 509 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAP-CVLFFDELDSIATQRG 587 (802)
Q Consensus 509 ~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p-~il~iDEid~l~~~r~ 587 (802)
.+.++|+||||||||||++|+-||..+|..+-.+.|.++... -.+.-..|.++|+.+..+.. -+|||||+|+++..|+
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRn 460 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERN 460 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhc
Confidence 456679999999999999999999999999999999887532 22445689999999988654 3889999999999987
Q ss_pred CCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC
Q 003691 588 SSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS 667 (802)
Q Consensus 588 ~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~ 667 (802)
... .++..+..+|.||-.-- ..+.+++++.+||+|..||.|+-. |+|.+|+||+|..++|..++..++.++-+.
T Consensus 461 kty--mSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~ 534 (630)
T KOG0742|consen 461 KTY--MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILK 534 (630)
T ss_pred hhh--hcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcC
Confidence 642 34566778888875533 446789999999999999999998 999999999999999999999998765321
Q ss_pred C-----------------------ccC----HHHHHHHccCCCHHHHHHHHHHHHHHHH
Q 003691 668 P-----------------------DVD----LSALARYTHGFSGADITEVCQRACKYAI 699 (802)
Q Consensus 668 ~-----------------------~~~----~~~la~~t~g~sg~di~~~~~~a~~~a~ 699 (802)
+ ..+ +.+.|+.|+||||++|..++-.....+.
T Consensus 535 ~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavY 593 (630)
T KOG0742|consen 535 PATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVY 593 (630)
T ss_pred cCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Confidence 0 011 4577889999999999988765544443
No 82
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=2.9e-21 Score=181.56 Aligned_cols=130 Identities=46% Similarity=0.790 Sum_probs=117.8
Q ss_pred eeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhccCccHHHHHHHHHHHhhCC-CeEEEEcccchhhhccCCCCCC
Q 003691 514 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSA-PCVLFFDELDSIATQRGSSTGD 592 (802)
Q Consensus 514 ill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~-p~il~iDEid~l~~~r~~~~~~ 592 (802)
|||+||||||||++|+.+|..++.+++.++++++.+.+.+++++.+..+|+.+.... |+|+||||+|.+..... ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~---~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ---PS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS---TS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc---cc
Confidence 689999999999999999999999999999999999999999999999999999888 99999999999998861 22
Q ss_pred CCCchHHHHHHHHHHhhccCCC-CcEEEEEecCCCCCCCccccCCCCcceEEEecC
Q 003691 593 AGGAADRVLNQLLTEMDGMNAK-KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 647 (802)
Q Consensus 593 ~~~~~~~vl~~lL~~ld~~~~~-~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~ 647 (802)
.......+++.|+..|+..... .+++||+|||.++.++++++| +||+..+++|+
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 3456788999999999988765 579999999999999999998 89999999974
No 83
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.79 E-value=1.1e-18 Score=163.89 Aligned_cols=129 Identities=48% Similarity=0.826 Sum_probs=117.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhccchhHHHHHHHHHHHHhcC-CeEEEecccccccCCCCCCchh
Q 003691 241 ILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDELDSIAPKREKTHGE 319 (802)
Q Consensus 241 vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~~~ 319 (802)
|||+||||||||++++.+|+.++.+++.+++.++.+.+.++....+..+|+.+.... |+++||||+|.+.++.......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 699999999999999999999999999999999998899999999999999998887 9999999999999887445566
Q ss_pred HHHHHHHHHHHhhhcccCC-CcEEEEEecCCCCCCCHHhhccCCcceEEEeC
Q 003691 320 VERRIVSQLLTLMDGLKSR-AHVIVMGATNRPNSIDPALRRFGRFDREIDIG 370 (802)
Q Consensus 320 ~~~~v~~~Ll~~ld~~~~~-~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~ 370 (802)
....+..+|+..++..... .++++|++||.++.+++.+.+ +||+..++++
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 7788899999999987765 569999999999999999998 8999999886
No 84
>CHL00181 cbbX CbbX; Provisional
Probab=99.76 E-value=2.7e-17 Score=174.43 Aligned_cols=213 Identities=18% Similarity=0.317 Sum_probs=157.5
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCCC---CcEEEEECCCCCcHHHHHHHHHHHhC-------CcEEEEech
Q 003691 203 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFLINGP 272 (802)
Q Consensus 203 ~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~---~~~vLL~GppGtGKTtLar~la~~l~-------~~~v~v~~~ 272 (802)
+.+++|++.++++|++++.+ +..+++...+|+.+ +.+++|+||||||||++|+++|+.+. .+++.+++.
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 34799999999999999887 44567777777754 44699999999999999999998752 358899999
Q ss_pred hhhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC-
Q 003691 273 EIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN- 351 (802)
Q Consensus 273 ~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~- 351 (802)
++.+.+.|+++..++.+|+.+. +++|||||++.+...++ ..+....+...|+..|+... ..++||++++...
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~~~~ 173 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQR--DDLVVIFAGYKDRM 173 (287)
T ss_pred HHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcHHH
Confidence 9999999988888888888764 46999999999875432 22345677888999887543 4567776665321
Q ss_pred ----CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCc--cccchh---hHHHHhh--cCCCc-hHHHHHHHHHHH
Q 003691 352 ----SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMK--LAEDVD---LERVAKD--THGYV-GSDLAALCTEAA 419 (802)
Q Consensus 352 ----~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~--l~~~~~---l~~la~~--t~g~~-~~dl~~l~~~A~ 419 (802)
.++|++++ ||+..++|+.++.+++.+|+..++++.. +.++.. ...+... ...|. ++.+..++..+.
T Consensus 174 ~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 174 DKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34688988 9999999999999999999998876543 333221 1222221 23454 688888888877
Q ss_pred HHhHHh
Q 003691 420 LQCIRE 425 (802)
Q Consensus 420 ~~~~~~ 425 (802)
.....+
T Consensus 252 ~~~~~r 257 (287)
T CHL00181 252 MRQANR 257 (287)
T ss_pred HHHHHH
Confidence 655444
No 85
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.76 E-value=8.1e-18 Score=166.62 Aligned_cols=189 Identities=27% Similarity=0.418 Sum_probs=127.5
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhcc
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 552 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~v 552 (802)
+.+++++.|+++++..+.-.+...... -....+++||||||+||||||+.+|++++.+|..++++.+
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i----- 86 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAI----- 86 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC------
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhh-----
Confidence 458899999999999887655432111 1234579999999999999999999999999999998764
Q ss_pred CccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC-----C-----------CCc
Q 003691 553 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----A-----------KKT 616 (802)
Q Consensus 553 g~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----~-----------~~~ 616 (802)
+....+..++..... ..|||+|||+++- ..+...|+..|++.. + ..+
T Consensus 87 -~k~~dl~~il~~l~~--~~ILFIDEIHRln--------------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 87 -EKAGDLAAILTNLKE--GDILFIDEIHRLN--------------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp --SCHHHHHHHHT--T--T-EEEECTCCC----------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred -hhHHHHHHHHHhcCC--CcEEEEechhhcc--------------HHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 223455556655543 3699999999984 345677888888642 1 136
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccC-HHHHHHHccCCCHHHHHHHHHHH
Q 003691 617 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHGFSGADITEVCQRA 694 (802)
Q Consensus 617 v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-~~~la~~t~g~sg~di~~~~~~a 694 (802)
+.+|+||++...|.+.|.. ||..+..+..++.++..+|++...+...+.-+.+ ..++|+.+.| +++=-.++++++
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 8899999999999999998 9998889999999999999998888776654333 4677776664 566555565554
No 86
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.74 E-value=3.5e-17 Score=173.85 Aligned_cols=210 Identities=19% Similarity=0.288 Sum_probs=155.0
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCCCC---CcEEEEECCCCCcHHHHHHHHHHHhC-------CcEEEEechhh
Q 003691 205 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFLINGPEI 274 (802)
Q Consensus 205 ~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~---~~~vLL~GppGtGKTtLar~la~~l~-------~~~v~v~~~~l 274 (802)
+++|++.++++|++++.+ +..++.+..+|+.+ +.+++|+||||||||++|+++|..+. .+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 699999999999999887 66777888888764 45899999999999999999998763 36889999999
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCC--CC-
Q 003691 275 MSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR--PN- 351 (802)
Q Consensus 275 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~--~~- 351 (802)
.+.+.|+++..++.+|+.+. +++|||||++.+...++ .......+...|+..|+... ..+++|++++. ++
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~~--~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQR--DDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcHHHHH
Confidence 98889988888888888864 36999999999865432 22344567788888887543 46677766653 22
Q ss_pred --CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhh-----c-CCC-chHHHHHHHHHHHHH
Q 003691 352 --SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKD-----T-HGY-VGSDLAALCTEAALQ 421 (802)
Q Consensus 352 --~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~-----t-~g~-~~~dl~~l~~~A~~~ 421 (802)
.++|++++ ||...++++.++.+++.+|++.++++.... +......+... . +.+ .++.+..++..+...
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 34789988 999999999999999999999887764321 11122223222 1 222 256777777777654
Q ss_pred hHH
Q 003691 422 CIR 424 (802)
Q Consensus 422 ~~~ 424 (802)
.-.
T Consensus 253 ~~~ 255 (284)
T TIGR02880 253 QAN 255 (284)
T ss_pred HHH
Confidence 433
No 87
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.73 E-value=1.3e-16 Score=168.12 Aligned_cols=176 Identities=22% Similarity=0.319 Sum_probs=132.6
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCC---CCcEEEEECCCCCcHHHHHHHHHHHh-------CCcEEEEech
Q 003691 203 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK---PPKGILLYGPPGSGKTLIARAVANET-------GAFFFLINGP 272 (802)
Q Consensus 203 ~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~---~~~~vLL~GppGtGKTtLar~la~~l-------~~~~v~v~~~ 272 (802)
+++++|+++++++|++++.++... ......|.. ...+++|+|||||||||+|+++|+.+ ...++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567999999999999998875433 222334543 33579999999999999999999875 2357889999
Q ss_pred hhhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCC--
Q 003691 273 EIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRP-- 350 (802)
Q Consensus 273 ~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~-- 350 (802)
++.+.+.|+....++.+|+.+. +++|||||+|.|..... .......+..|+..|+... ..+++|+++...
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~---~~~~~~~i~~Ll~~~e~~~--~~~~vila~~~~~~ 155 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE---KDFGKEAIDTLVKGMEDNR--NEFVLILAGYSDEM 155 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc---cchHHHHHHHHHHHHhccC--CCEEEEecCCcchh
Confidence 9999999999999999998764 46999999999974321 1233456677888887653 345555444322
Q ss_pred ---CCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCc
Q 003691 351 ---NSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMK 389 (802)
Q Consensus 351 ---~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~ 389 (802)
..++|++++ ||...+.++.++.+++.+|++.++....
T Consensus 156 ~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 156 DYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKERE 195 (261)
T ss_pred HHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcC
Confidence 246788887 8988999999999999999998876543
No 88
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.72 E-value=7.6e-17 Score=192.98 Aligned_cols=244 Identities=20% Similarity=0.260 Sum_probs=167.2
Q ss_pred cccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh----------CCeEEEEe
Q 003691 474 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 543 (802)
Q Consensus 474 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~----------~~~~i~v~ 543 (802)
-.++++.|.++....+.+.+.. ....+++|+||||||||++++++|..+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 4567788887776655544332 234579999999999999999999987 67789999
Q ss_pred Ccchh--hhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEE
Q 003691 544 GPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 621 (802)
Q Consensus 544 ~~~l~--~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~ 621 (802)
...+. .+|.|+.++.++.+|+.+....++||||||||.+.+.+..+++ ...+.+.|+..|. .+.+.+|+
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~-----~~~~~~~L~~~l~----~g~i~~Ig 316 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG-----SMDASNLLKPALS----SGKLRCIG 316 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc-----cHHHHHHHHHHHh----CCCeEEEE
Confidence 88887 5899999999999999998777899999999999876532211 1223444555554 56789999
Q ss_pred ecCCC-----CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCC----CC-CccCHHHHHHHccCCCHH-----H
Q 003691 622 ATNRP-----DIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP----IS-PDVDLSALARYTHGFSGA-----D 686 (802)
Q Consensus 622 aTn~~-----~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~----~~-~~~~~~~la~~t~g~sg~-----d 686 (802)
|||.. ..+|+|+.| ||. .|+++.|+.+++.+|++.....+. +. .+..+..++..+..|-+. -
T Consensus 317 aTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~k 393 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDK 393 (731)
T ss_pred ecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHH
Confidence 99974 357999999 997 799999999999999997765432 11 122345555555544322 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcccccccccccccccHHHHHHHHhhcC----CCCCHHHHHHHHHHHHHH
Q 003691 687 ITEVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYAR----RSVSDADIRKYQLFAQTL 762 (802)
Q Consensus 687 i~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~----~s~~~~~~~~y~~~~~~~ 762 (802)
--.++.+|+..+..+. . ......|+.+|+..++.... ..++.++...+....+.+
T Consensus 394 ai~lld~a~a~~~~~~--------------------~-~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l 452 (731)
T TIGR02639 394 AIDVIDEAGASFRLRP--------------------K-AKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNL 452 (731)
T ss_pred HHHHHHHhhhhhhcCc--------------------c-cccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHH
Confidence 1233444433211100 0 00123589999999987763 245566677776665555
Q ss_pred h
Q 003691 763 Q 763 (802)
Q Consensus 763 ~ 763 (802)
.
T Consensus 453 ~ 453 (731)
T TIGR02639 453 K 453 (731)
T ss_pred h
Confidence 3
No 89
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.72 E-value=4.1e-17 Score=196.19 Aligned_cols=164 Identities=27% Similarity=0.388 Sum_probs=128.0
Q ss_pred ccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchh--------
Q 003691 477 EDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 548 (802)
Q Consensus 477 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~-------- 548 (802)
+++.|++++++.+.+.+...... +...+..++|+||||||||++|+++|+.++.+|+.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 45889999999998876543211 112234699999999999999999999999999988765432
Q ss_pred -hhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhcc-----C--------CC
Q 003691 549 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM-----N--------AK 614 (802)
Q Consensus 549 -~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~-----~--------~~ 614 (802)
..|+|.....+...|..+....| |+||||||.+....+. ...+.||..||.. . ..
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~----------~~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG----------DPASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC----------CHHHHHHHhcCHHhcCccccccCCceecc
Confidence 36888888888899998876666 8999999999742111 1245677766631 1 12
Q ss_pred CcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHh
Q 003691 615 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL 661 (802)
Q Consensus 615 ~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l 661 (802)
.++++|+|||.++.|++++++ ||+ +|+|+.|+.+++.+|++.++
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 578999999999999999998 996 88999999999999998876
No 90
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.71 E-value=2.4e-16 Score=165.99 Aligned_cols=227 Identities=23% Similarity=0.362 Sum_probs=154.2
Q ss_pred cccccccccccchhhh---hhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchh
Q 003691 472 PNVSWEDIGGLDNVKR---ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 548 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~---~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~ 548 (802)
.+-+++++.|++++.. -|++.+. -....+++|||||||||||||++||+..+..|..+++-.
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~-------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVE-------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHh-------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 3567888999887642 2333332 123346999999999999999999999999999998743
Q ss_pred hhccCccHHHHHHHHHHHhhCC----CeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEec-
Q 003691 549 TMWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT- 623 (802)
Q Consensus 549 ~~~vg~se~~i~~lf~~a~~~~----p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aT- 623 (802)
.+-+.++.+|++|++.. ..|||+|||+++-.. -...||-.|+ ++.+++|+||
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~--------------QQD~lLp~vE----~G~iilIGATT 140 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA--------------QQDALLPHVE----NGTIILIGATT 140 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--------------hhhhhhhhhc----CCeEEEEeccC
Confidence 46788999999996543 379999999998432 2345677766 5678888888
Q ss_pred -CCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhc--cCCCC------CccCHHHHHHHccCCCHHHHHHHHHHH
Q 003691 624 -NRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLR--KSPIS------PDVDLSALARYTHGFSGADITEVCQRA 694 (802)
Q Consensus 624 -n~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~--~~~~~------~~~~~~~la~~t~g~sg~di~~~~~~a 694 (802)
|....|.+|+++ |.. ++.+.+.+.++..+++++.+. +.++. ++.-...++..++ +|.+.+++..
T Consensus 141 ENPsF~ln~ALlS--R~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~----GD~R~aLN~L 213 (436)
T COG2256 141 ENPSFELNPALLS--RAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSN----GDARRALNLL 213 (436)
T ss_pred CCCCeeecHHHhh--hhh-eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcC----chHHHHHHHH
Confidence 667789999998 885 889999999999999988442 22232 1222455666554 4777666544
Q ss_pred HHHHHHHHHHHhHHHHHhhcCCCcccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcccC
Q 003691 695 CKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRG 767 (802)
Q Consensus 695 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~s~~~~~~~~y~~~~~~~~~~~~ 767 (802)
-+.+..... ...++.+.+++.+.+..+.-.+..=..|.-.+.-+++.|+
T Consensus 214 E~~~~~~~~------------------------~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRG 262 (436)
T COG2256 214 ELAALSAEP------------------------DEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRG 262 (436)
T ss_pred HHHHHhcCC------------------------CcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhcc
Confidence 433332110 0023366666666665555555555666666666666554
No 91
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.70 E-value=5.9e-16 Score=168.80 Aligned_cols=234 Identities=22% Similarity=0.299 Sum_probs=166.4
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhcc
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 552 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~v 552 (802)
+.+|+++.|+++.++.+...+..... .-.++.+++|+||||||||++|+++|++++..+..++++.+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 35799999999999998877643111 113456799999999999999999999999988777776432
Q ss_pred CccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC----------------CCCc
Q 003691 553 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----------------AKKT 616 (802)
Q Consensus 553 g~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----------------~~~~ 616 (802)
....+..++.... .++++||||||.+... ..+.|...|+... ...+
T Consensus 89 --~~~~l~~~l~~l~--~~~vl~IDEi~~l~~~--------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 89 --KPGDLAAILTNLE--EGDVLFIDEIHRLSPV--------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred --ChHHHHHHHHhcc--cCCEEEEecHhhcchH--------------HHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 2334555555543 4579999999998421 1222344444321 1134
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCCCHHHHHHHHHHHH
Q 003691 617 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFSGADITEVCQRAC 695 (802)
Q Consensus 617 v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~sg~di~~~~~~a~ 695 (802)
+.+|++||++..+++++.+ ||...+.+++|+.+++.+|++..+....+.-+ .-+..+++.+.| +++.+..+++.+.
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~ 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVR 227 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHH
Confidence 7889999999999999987 99999999999999999999988876654422 236788887776 4677778887766
Q ss_pred HHHHHHHHHHhHHHHHhhcCCCcccccccccccccccHHHHHHHHhhcCC---CCCHHHHHHHHHHHHHHhc
Q 003691 696 KYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARR---SVSDADIRKYQLFAQTLQQ 764 (802)
Q Consensus 696 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~---s~~~~~~~~y~~~~~~~~~ 764 (802)
..|..+. ...|+.+++..++..+.. .++..+.+.+..+.+.|..
T Consensus 228 ~~a~~~~-------------------------~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~ 274 (328)
T PRK00080 228 DFAQVKG-------------------------DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGG 274 (328)
T ss_pred HHHHHcC-------------------------CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCC
Confidence 5554331 125888888888877643 3566667776667776644
No 92
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.70 E-value=7.9e-16 Score=166.48 Aligned_cols=230 Identities=20% Similarity=0.282 Sum_probs=154.8
Q ss_pred ccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhccCc
Q 003691 475 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 554 (802)
Q Consensus 475 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~vg~ 554 (802)
+|+++.|++++++.|...+..... ....+.+++|+||||||||+||+++|.+++.++..+.++.+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~------ 67 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE------ 67 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhc------
Confidence 689999999999998877643211 112345699999999999999999999999887766654332
Q ss_pred cHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC----------------CCCcEE
Q 003691 555 SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----------------AKKTVF 618 (802)
Q Consensus 555 se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----------------~~~~v~ 618 (802)
....+...+... ..+.++|||||+.+.+. ....|+..|+... ...++.
T Consensus 68 ~~~~l~~~l~~~--~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 68 KPGDLAAILTNL--EEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred CchhHHHHHHhc--ccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 112233333332 24579999999998431 2233444444321 123478
Q ss_pred EEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCCHHHHHHHHHHHHHH
Q 003691 619 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFSGADITEVCQRACKY 697 (802)
Q Consensus 619 vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g~sg~di~~~~~~a~~~ 697 (802)
+|++||++..+++++.+ ||...+.+++|+.+++.+|++..+....+.- +..+..+++.+.|+ ++.+..++..+...
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~~~~~ 208 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIANRLLRRVRDF 208 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHHHHHHHHHHH
Confidence 99999999999999988 9998999999999999999998887554432 22356788877764 57777787766554
Q ss_pred HHHHHHHHhHHHHHhhcCCCcccccccccccccccHHHHHHHHhhcCC---CCCHHHHHHHHHHHHHH
Q 003691 698 AIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARR---SVSDADIRKYQLFAQTL 762 (802)
Q Consensus 698 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~---s~~~~~~~~y~~~~~~~ 762 (802)
|.... ...|+.++++.++..+.. ..+..+.+.+..+.+.+
T Consensus 209 a~~~~-------------------------~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~ 251 (305)
T TIGR00635 209 AQVRG-------------------------QKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQF 251 (305)
T ss_pred HHHcC-------------------------CCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHh
Confidence 43321 125788888888876432 23444444333344433
No 93
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.68 E-value=1.8e-15 Score=152.32 Aligned_cols=196 Identities=26% Similarity=0.365 Sum_probs=152.5
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhcc
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 552 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~v 552 (802)
+..|++..|++++|+.|.-.+....... ...-++|||||||.||||||..+|++++.++-..+|+-+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l----- 88 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL----- 88 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc-----
Confidence 4578899999999999988776543332 344579999999999999999999999999999999877
Q ss_pred CccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC----------------CCCc
Q 003691 553 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----------------AKKT 616 (802)
Q Consensus 553 g~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----------------~~~~ 616 (802)
+....+..++...... +|+|||||+++.+ .+-..|.-.|+++. ...+
T Consensus 89 -eK~gDlaaiLt~Le~~--DVLFIDEIHrl~~--------------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 89 -EKPGDLAAILTNLEEG--DVLFIDEIHRLSP--------------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred -cChhhHHHHHhcCCcC--CeEEEehhhhcCh--------------hHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 4556677777776555 6999999999843 23334455676643 1246
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHccCCCHHHHHHHHHHHH
Q 003691 617 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFSGADITEVCQRAC 695 (802)
Q Consensus 617 v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la~~t~g~sg~di~~~~~~a~ 695 (802)
+.+|+||.+.-+|...|.. ||.....+..++.++..+|+++..+.+.+.-+. ...++|+.+.| +++=-..++++.-
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVR 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVR 228 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHH
Confidence 8899999999999999987 999999999999999999999998877766443 35678887765 5655556777776
Q ss_pred HHHHHH
Q 003691 696 KYAIRE 701 (802)
Q Consensus 696 ~~a~~~ 701 (802)
..|..+
T Consensus 229 Dfa~V~ 234 (332)
T COG2255 229 DFAQVK 234 (332)
T ss_pred HHHHHh
Confidence 666644
No 94
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5.3e-16 Score=166.32 Aligned_cols=179 Identities=26% Similarity=0.352 Sum_probs=139.9
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhccc
Q 003691 201 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (802)
Q Consensus 201 ~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~~~g 280 (802)
-+|+.+.=-...+++|.+=+...++..+.++..|..-.+|.|||||||||||+++-|+|+.++..++.++-.++..
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 5666666666777777777776678899999999999999999999999999999999999999888777544421
Q ss_pred hhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCch---h----HHHHHHHHHHHhhhcccCCC--cEEEEEecCCCC
Q 003691 281 ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHG---E----VERRIVSQLLTLMDGLKSRA--HVIVMGATNRPN 351 (802)
Q Consensus 281 ~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~----~~~~v~~~Ll~~ld~~~~~~--~vivI~~tn~~~ 351 (802)
... ++.++-.. ...+||+|++||+-+.-++.... + ...-..+.|++.+||+.+.. .-+||.|||..+
T Consensus 274 -n~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 274 -DSD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred -cHH-HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 122 66666664 34579999999987653321111 1 12245678999999998765 567778999999
Q ss_pred CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcc
Q 003691 352 SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN 387 (802)
Q Consensus 352 ~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~ 387 (802)
.|||||.|+||+|..|+++..+...-..+...++.-
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 999999999999999999999999888888776643
No 95
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=9.2e-17 Score=163.38 Aligned_cols=173 Identities=28% Similarity=0.376 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHccccChhhHhhhC-CCCCcEEEEECCCCCcHHHHHHHHHHHhC---------CcEEEEechhhhhhccc
Q 003691 211 KQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETG---------AFFFLINGPEIMSKLAG 280 (802)
Q Consensus 211 ~~~~~l~~~v~~~l~~~~~~~~l~-i~~~~~vLL~GppGtGKTtLar~la~~l~---------~~~v~v~~~~l~~~~~g 280 (802)
..++++..+....+...+.-.+-. |.-.+-|||+||||||||+|+++||+.+. ...+++|+..++++|.+
T Consensus 149 ~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFs 228 (423)
T KOG0744|consen 149 NLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFS 228 (423)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHh
Confidence 445666665544333322111111 34456799999999999999999999974 23589999999999999
Q ss_pred hhHHHHHHHHHHHHhc---C--CeEEEecccccccCCCCCC----chhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC
Q 003691 281 ESESNLRKAFEEAEKN---A--PSIIFIDELDSIAPKREKT----HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 351 (802)
Q Consensus 281 ~~~~~l~~vf~~a~~~---~--p~il~iDEid~l~~~~~~~----~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~ 351 (802)
++.+.+..+|+..... . -..++|||++.+...|... .....-|+++++++.+|.++...+|++++|+|-.+
T Consensus 229 ESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~ 308 (423)
T KOG0744|consen 229 ESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD 308 (423)
T ss_pred hhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH
Confidence 9999999999987652 1 2346799999997665321 11123589999999999999999999999999999
Q ss_pred CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHh
Q 003691 352 SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT 385 (802)
Q Consensus 352 ~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~ 385 (802)
.+|.++.. |-|-..++++|+...+.+|++...
T Consensus 309 siD~AfVD--RADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 309 SIDVAFVD--RADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred HHHHHhhh--HhhheeecCCccHHHHHHHHHHHH
Confidence 99999976 888889999999999999998654
No 96
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.67 E-value=7e-16 Score=182.14 Aligned_cols=199 Identities=22% Similarity=0.261 Sum_probs=141.9
Q ss_pred ccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh----------CCeEEEEeC
Q 003691 475 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKG 544 (802)
Q Consensus 475 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~----------~~~~i~v~~ 544 (802)
.++.+.|-+.....+.+.+.. ....+++|+||||||||++|+++|..+ +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 345566666555555443332 234568999999999999999999874 445666666
Q ss_pred cchh--hhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEe
Q 003691 545 PELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGA 622 (802)
Q Consensus 545 ~~l~--~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~a 622 (802)
..++ .+|.|+.++.++.+|+.+.+..++||||||||.+++.++... ....+.+.|...+ ..+.+.||+|
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~-----g~~d~~nlLkp~L----~~g~i~vIgA 321 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG-----GQVDAANLIKPLL----SSGKIRVIGS 321 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCC-----cHHHHHHHHHHHH----hCCCeEEEec
Confidence 6666 578899999999999999888889999999999987653221 1122333333233 3678999999
Q ss_pred cCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHH-----HHHHHcc-----CCCHHHH
Q 003691 623 TNRPD-----IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLS-----ALARYTH-----GFSGADI 687 (802)
Q Consensus 623 Tn~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~-----~la~~t~-----g~sg~di 687 (802)
||.++ .+|+|+.| ||+ .|+++.|+.+++..||+....++....++++. ..+..+. .+-+...
T Consensus 322 Tt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKa 398 (758)
T PRK11034 322 TTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_pred CChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHH
Confidence 99875 47999999 997 89999999999999999888776655555442 2333333 3344566
Q ss_pred HHHHHHHHHHH
Q 003691 688 TEVCQRACKYA 698 (802)
Q Consensus 688 ~~~~~~a~~~a 698 (802)
..++.+|+..+
T Consensus 399 idlldea~a~~ 409 (758)
T PRK11034 399 IDVIDEAGARA 409 (758)
T ss_pred HHHHHHHHHhh
Confidence 77888877643
No 97
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.1e-15 Score=159.44 Aligned_cols=174 Identities=30% Similarity=0.546 Sum_probs=130.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhccchhHHHHHHHHHHHHhcCC-eEEEecccccccCCCCCC
Q 003691 238 PKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP-SIIFIDELDSIAPKREKT 316 (802)
Q Consensus 238 ~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p-~il~iDEid~l~~~~~~~ 316 (802)
-++|++|||||||||++|+-||...|..+-...|.++... -.+.-..+..+|+.+..... -+|||||.|+++-.++..
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt 462 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT 462 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh
Confidence 3579999999999999999999999998877777665321 22345678999999987654 467999999888776543
Q ss_pred c-hhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCcc-----
Q 003691 317 H-GEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL----- 390 (802)
Q Consensus 317 ~-~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l----- 390 (802)
. ++..+..++.|+-.-. .+...++++.+||+|..+|.++.. |++..++||.|.+++|..+|..++.++-+
T Consensus 463 ymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~ 538 (630)
T KOG0742|consen 463 YMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATS 538 (630)
T ss_pred hhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCC
Confidence 2 3334444444442222 233467888899999999999987 99999999999999999999877654321
Q ss_pred -------------------cc---chhhHHHHhhcCCCchHHHHHHHH
Q 003691 391 -------------------AE---DVDLERVAKDTHGYVGSDLAALCT 416 (802)
Q Consensus 391 -------------------~~---~~~l~~la~~t~g~~~~dl~~l~~ 416 (802)
.. +.-+.+.+..|+||+|..|..|+.
T Consensus 539 ~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva 586 (630)
T KOG0742|consen 539 GKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVA 586 (630)
T ss_pred CCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 11 112567888999999999988865
No 98
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.66 E-value=2.7e-15 Score=148.83 Aligned_cols=182 Identities=26% Similarity=0.437 Sum_probs=120.5
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 275 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~ 275 (802)
+.+.+.+++++.|+++.++.++-++....... .+-.+++||||||+||||||+.+|++++..+...+++.+-
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 46788899999999999999877765422111 2346899999999999999999999999999988886542
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccC----------------CC
Q 003691 276 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKS----------------RA 339 (802)
Q Consensus 276 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~----------------~~ 339 (802)
. ...+..++... ....||||||||.+.. ...+.|+..|+...- -.
T Consensus 88 k------~~dl~~il~~l--~~~~ILFIDEIHRlnk-----------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 88 K------AGDLAAILTNL--KEGDILFIDEIHRLNK-----------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp S------CHHHHHHHHT----TT-EEEECTCCC--H-----------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred h------HHHHHHHHHhc--CCCcEEEEechhhccH-----------HHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1 12333444443 3456999999999842 344667777764321 13
Q ss_pred cEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCC
Q 003691 340 HVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 406 (802)
Q Consensus 340 ~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 406 (802)
++.+||+|++...+.+.|+. ||.....+..++.++...|++...+.+.+. ++....++|.++.|.
T Consensus 149 ~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt 214 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGT 214 (233)
T ss_dssp --EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS
T ss_pred CceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC
Confidence 68899999999999999998 999888999999999999998666555543 233467788887775
No 99
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.3e-15 Score=169.26 Aligned_cols=165 Identities=27% Similarity=0.408 Sum_probs=130.4
Q ss_pred cccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchh-------
Q 003691 476 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL------- 548 (802)
Q Consensus 476 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~------- 548 (802)
-+|-.|++++|+++.+.+...... +-..++-++|+||||+|||.+++.+|..++..|+.++-..+.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 457789999999999987642211 222334499999999999999999999999999988754443
Q ss_pred --hhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhcc-------------CC
Q 003691 549 --TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM-------------NA 613 (802)
Q Consensus 549 --~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~-------------~~ 613 (802)
..|+|.....+-+-++......| +++|||||.+. ++..+ +. -+.||..||-- -.
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG--~g~qG-DP-------asALLElLDPEQNanFlDHYLdVp~D 551 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG--SGHQG-DP-------ASALLELLDPEQNANFLDHYLDVPVD 551 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC--CCCCC-Ch-------HHHHHHhcChhhccchhhhccccccc
Confidence 35999999999999999888887 89999999997 32221 11 14455555431 13
Q ss_pred CCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHh
Q 003691 614 KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL 661 (802)
Q Consensus 614 ~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l 661 (802)
..+|++|||.|..+.|+++|+. |+. +|.++-|..++..+|-+.||
T Consensus 552 LSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 552 LSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhh
Confidence 4689999999999999999998 996 99999999999999999988
No 100
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.4e-15 Score=168.37 Aligned_cols=207 Identities=25% Similarity=0.337 Sum_probs=155.4
Q ss_pred cccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchh-------
Q 003691 476 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL------- 548 (802)
Q Consensus 476 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~------- 548 (802)
-.|-.|++++|+++.+.+...... +-..+.-+||+||||+|||+|++.+|..++..|+.+.-..+.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRG 394 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRG 394 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcc
Confidence 346779999999999887642111 111123389999999999999999999999999998764443
Q ss_pred --hhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhcc-------------CC
Q 003691 549 --TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM-------------NA 613 (802)
Q Consensus 549 --~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~-------------~~ 613 (802)
..|+|.....|-+-..+|....| ++++||||.+...-. ++. -+.||.-||-- -.
T Consensus 395 HRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r---GDP-------aSALLEVLDPEQN~~F~DhYLev~yD 463 (782)
T COG0466 395 HRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR---GDP-------ASALLEVLDPEQNNTFSDHYLEVPYD 463 (782)
T ss_pred ccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC---CCh-------HHHHHhhcCHhhcCchhhccccCccc
Confidence 35999999899899999998888 999999999964311 111 24456555531 12
Q ss_pred CCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhc-----cCCCCCccCHHHHHHHccCCCHHHHH
Q 003691 614 KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLR-----KSPISPDVDLSALARYTHGFSGADIT 688 (802)
Q Consensus 614 ~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~-----~~~~~~~~~~~~la~~t~g~sg~di~ 688 (802)
..+|++|||.|..+.|+.+|+. |+. +|.++-++.++..+|-+.|+= ...+..+ .-.|+..-|.
T Consensus 464 LS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~---------el~i~d~ai~ 531 (782)
T COG0466 464 LSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKG---------ELTITDEAIK 531 (782)
T ss_pred hhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCcc---------ceeecHHHHH
Confidence 4689999999999999999998 996 999999999999999999882 1222211 1236777888
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHh
Q 003691 689 EVCQRACKYAIRENIEKDIERERR 712 (802)
Q Consensus 689 ~~~~~a~~~a~~~~~~~~~~~~~~ 712 (802)
.+++.....|-.|+++..+....|
T Consensus 532 ~iI~~YTREAGVR~LeR~i~ki~R 555 (782)
T COG0466 532 DIIRYYTREAGVRNLEREIAKICR 555 (782)
T ss_pred HHHHHHhHhhhhhHHHHHHHHHHH
Confidence 888888888888888777655443
No 101
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1e-13 Score=162.18 Aligned_cols=162 Identities=25% Similarity=0.364 Sum_probs=106.5
Q ss_pred cccccC-hHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC----------CcEEEEec
Q 003691 203 YDDVGG-VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFLING 271 (802)
Q Consensus 203 ~~~i~G-~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~----------~~~v~v~~ 271 (802)
.+.+.| .++.++++.+.+.. ...++-+|+|.||+|||.++.-+++.+- ..++.++-
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 344444 37776666665532 2346789999999999999999998752 23344444
Q ss_pred hhhh--hhccchhHHHHHHHHHHHHh-cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecC
Q 003691 272 PEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATN 348 (802)
Q Consensus 272 ~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn 348 (802)
..+. .++.|+.+.++..+...+.. ....|||+||++-+...... .+. -...+.|...+ .++.+-+||+|.
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~-~~~--~d~~nlLkp~L----~rg~l~~IGatT 324 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN-YGA--IDAANLLKPLL----ARGGLWCIGATT 324 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc-chH--HHHHHhhHHHH----hcCCeEEEeccc
Confidence 3332 35778899999999999884 45678899999999876544 111 11222222222 344588888776
Q ss_pred CC-----CCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcc
Q 003691 349 RP-----NSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN 387 (802)
Q Consensus 349 ~~-----~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~ 387 (802)
.- -.-+|++.+ ||+. +.++.|....-..||.....+
T Consensus 325 ~e~Y~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 325 LETYRKCIEKDPALER--RWQL-VLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred HHHHHHHHhhCcchhh--Ccce-eEeccCcccchhhhhhhhhhh
Confidence 21 234888988 8854 578889887766677655444
No 102
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.60 E-value=1.6e-14 Score=159.85 Aligned_cols=223 Identities=20% Similarity=0.289 Sum_probs=147.4
Q ss_pred cccccchhhhhhhhhhcCcCCChhhhhh--ccC-CCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchh-hhccC
Q 003691 478 DIGGLDNVKRELQETVQYPVEHPEKFEK--FGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFG 553 (802)
Q Consensus 478 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~--~~~-~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~-~~~vg 553 (802)
.|.|++.+++.|...+..+.+....... -.. ....++||+||||||||++|+++|..++.+|+.+++..+. ..|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 3889999999887665322111100000 011 1345699999999999999999999999999999998876 47898
Q ss_pred ccHHH-HHHHHHHH----hhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC-----------CCCcE
Q 003691 554 ESEAN-VREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTV 617 (802)
Q Consensus 554 ~se~~-i~~lf~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v 617 (802)
+.... +..+++.+ ....++|+||||||.+...+...+...+-....+++.||+.|++.. .....
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 86544 45555432 2346789999999999876433222222234568999999998631 12245
Q ss_pred EEEEecCCCC----------------------------------------------------CCCccccCCCCcceEEEe
Q 003691 618 FIIGATNRPD----------------------------------------------------IIDPALLRPGRLDQLIYI 645 (802)
Q Consensus 618 ~vi~aTn~~~----------------------------------------------------~ld~allr~gRf~~~i~~ 645 (802)
++|.|+|-.. -+.|+++ ||+|.+++|
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeec
Confidence 6677766511 0245555 599999999
Q ss_pred cCCCHHHHHHHHHH----Hhcc-------CCCCCcc---CHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHH
Q 003691 646 PLPDEASRLQIFKA----CLRK-------SPISPDV---DLSALARY--THGFSGADITEVCQRACKYAIREN 702 (802)
Q Consensus 646 ~~p~~~~r~~Il~~----~l~~-------~~~~~~~---~~~~la~~--t~g~sg~di~~~~~~a~~~a~~~~ 702 (802)
.+++.+...+|+.. .+++ ..+.-.+ -+..|++. ..++-.+.|+.++++.....+.+.
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 99999999999973 3321 1222111 24566654 344556788888888877777654
No 103
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=3.8e-14 Score=162.25 Aligned_cols=187 Identities=20% Similarity=0.291 Sum_probs=137.3
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC---------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 537 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~--------------- 537 (802)
..+|++|.|++.+++.|+..+.. -+.++.+||+||+||||||+++++|+.+.+
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 46899999999999999887653 134556899999999999999999998854
Q ss_pred ---------eEEEEeCcchhhhccCccHHHHHHHHHHHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHH
Q 003691 538 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 604 (802)
Q Consensus 538 ---------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 604 (802)
.++.++..+ ......++.+.+.+.. ....|+||||+|.|- ....|.|
T Consensus 80 r~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------------~~A~NAL 139 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------------NHAFNAM 139 (830)
T ss_pred HHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC--------------HHHHHHH
Confidence 233443321 1123456666665532 345799999999983 3457889
Q ss_pred HHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCC
Q 003691 605 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFS 683 (802)
Q Consensus 605 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~s 683 (802)
|+.|+.. ..++.+|.+||.++.|.+.+++ |+. .+.|..++.++..++|+..+.+..+. ++..+..|++.++| +
T Consensus 140 LKtLEEP--P~~v~FILaTtd~~KIp~TIrS--RCq-~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-s 213 (830)
T PRK07003 140 LKTLEEP--PPHVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-S 213 (830)
T ss_pred HHHHHhc--CCCeEEEEEECChhhccchhhh--heE-EEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999853 4578888888899999999987 994 89999999999999999888665543 22336677777765 4
Q ss_pred HHHHHHHHHHHHHH
Q 003691 684 GADITEVCQRACKY 697 (802)
Q Consensus 684 g~di~~~~~~a~~~ 697 (802)
.++..+++..+..+
T Consensus 214 mRdALsLLdQAia~ 227 (830)
T PRK07003 214 MRDALSLTDQAIAY 227 (830)
T ss_pred HHHHHHHHHHHHHh
Confidence 67777776666543
No 104
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.6e-14 Score=163.52 Aligned_cols=187 Identities=22% Similarity=0.317 Sum_probs=138.1
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC--------------
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 537 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~-------------- 537 (802)
...+|++|+|++.+++.|...+... +.++.+||+||+|+||||+|+.+|+.+.+
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 3468999999999999998877631 34556899999999999999999998864
Q ss_pred ---------------eEEEEeCcchhhhccCccHHHHHHHHHHHh----hCCCeEEEEcccchhhhccCCCCCCCCCchH
Q 003691 538 ---------------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAAD 598 (802)
Q Consensus 538 ---------------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~ 598 (802)
.++.+++.. ...-..++++.+... .....|+||||+|.+- .
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------------~ 138 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------------N 138 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------------H
Confidence 233333321 012344666665543 3446799999999983 3
Q ss_pred HHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHH
Q 003691 599 RVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALAR 677 (802)
Q Consensus 599 ~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la~ 677 (802)
...|.||+.|+. ...++++|.+||.++.|.+.+++ |+. .+.|..++.++..+.++..+.+..+.-+. .+..|++
T Consensus 139 ~AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RCq-~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~ 213 (700)
T PRK12323 139 HAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQ 213 (700)
T ss_pred HHHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HHH-hcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 467899999984 45678888899999999999998 994 89999999999999998887665544332 2566777
Q ss_pred HccCCCHHHHHHHHHHHHH
Q 003691 678 YTHGFSGADITEVCQRACK 696 (802)
Q Consensus 678 ~t~g~sg~di~~~~~~a~~ 696 (802)
.++| +.++..+++..+..
T Consensus 214 ~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 214 AAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HcCC-CHHHHHHHHHHHHH
Confidence 6664 67777777766554
No 105
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.58 E-value=6.1e-14 Score=157.55 Aligned_cols=180 Identities=27% Similarity=0.420 Sum_probs=126.6
Q ss_pred ccccccccccchhhhh---hhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhh
Q 003691 473 NVSWEDIGGLDNVKRE---LQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 549 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~---l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~ 549 (802)
+.+++++.|++++... |...+.. ....+++|+||||||||++|+++|..++..|+.+++...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 3567889999887555 6665532 123469999999999999999999999999999987532
Q ss_pred hccCccHHHHHHHHHHHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEec--
Q 003691 550 MWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT-- 623 (802)
Q Consensus 550 ~~vg~se~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aT-- 623 (802)
....++.+++.+.. ....+|||||+|.+.. ...+.|+..|+. +.+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------~~q~~LL~~le~----~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------------AQQDALLPHVED----GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------------HHHHHHHHHhhc----CcEEEEEeCCC
Confidence 33456666666542 2457999999998732 234567777663 456677665
Q ss_pred CCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccC-----CCCCccCHHHHHHHccCCCHHHHHHHHHHHH
Q 003691 624 NRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS-----PISPDVDLSALARYTHGFSGADITEVCQRAC 695 (802)
Q Consensus 624 n~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~-----~~~~~~~~~~la~~t~g~sg~di~~~~~~a~ 695 (802)
|....+++++++ |+ ..+.|++|+.++...+++..+... .+++ ..+..+++.+. -+.+.+.++++.+.
T Consensus 130 n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~-~al~~l~~~s~-Gd~R~aln~Le~~~ 201 (413)
T PRK13342 130 NPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDD-EALDALARLAN-GDARRALNLLELAA 201 (413)
T ss_pred ChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCH-HHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 334578999998 88 589999999999999999877542 2221 22456666653 34555556665554
No 106
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.56 E-value=2e-14 Score=173.84 Aligned_cols=167 Identities=20% Similarity=0.350 Sum_probs=126.8
Q ss_pred cccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh----------CCeEEEEe
Q 003691 474 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 543 (802)
Q Consensus 474 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~----------~~~~i~v~ 543 (802)
-.++.+.|.+.....+.+.+. .+...+++|+||||||||++|+++|..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHh-------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 356778888775444444332 2334569999999999999999999987 67888888
Q ss_pred Ccchh--hhccCccHHHHHHHHHHHhh-CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEE
Q 003691 544 GPELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFII 620 (802)
Q Consensus 544 ~~~l~--~~~vg~se~~i~~lf~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi 620 (802)
...+. .+|.|+.++.++.+|+.... ..++||||||||.+.+.++..+ . ....+.|...| .++.+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~-----~-~d~~~~lkp~l----~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-----A-MDAGNMLKPAL----ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc-----c-hhHHHHhcchh----hcCCCeEE
Confidence 88876 56899999999999998644 5689999999999987653221 1 12233333333 36789999
Q ss_pred EecCCCCC-----CCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCC
Q 003691 621 GATNRPDI-----IDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPI 666 (802)
Q Consensus 621 ~aTn~~~~-----ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~ 666 (802)
|||+..+. +|+|+.| ||+ .|+++.|+.+++..|++.....+..
T Consensus 312 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 99999873 8999999 998 6889999999999999887765433
No 107
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.56 E-value=2.2e-14 Score=172.86 Aligned_cols=185 Identities=21% Similarity=0.323 Sum_probs=133.7
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhC----------CeEEEE
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ----------ANFISV 542 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~----------~~~i~v 542 (802)
+-.++++.|.++....+.+.+. .....+++|+||||||||++|+.+|..+. ..++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~-------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILL-------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHh-------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 3467788888876444443322 12345689999999999999999998862 457777
Q ss_pred eCcchh--hhccCccHHHHHHHHHHHhh-CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEE
Q 003691 543 KGPELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFI 619 (802)
Q Consensus 543 ~~~~l~--~~~vg~se~~i~~lf~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~v 619 (802)
+...+. .+|.|+.++.++.+|+.++. ..++|||||||+.+.+.++..+. ..+-+.|+..|. ++.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~------~d~~n~Lkp~l~----~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ------GDAANLLKPALA----RGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc------ccHHHHhhHHhh----CCCeEE
Confidence 777766 36899999999999999865 45789999999999876543211 112233444443 667899
Q ss_pred EEecCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-----CccCHHHHHHHccCCC
Q 003691 620 IGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-----PDVDLSALARYTHGFS 683 (802)
Q Consensus 620 i~aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-----~~~~~~~la~~t~g~s 683 (802)
|+||+..+ .+|+||.| ||. .|.++.|+.+++..||+...+.+... .+..+..++..+.+|-
T Consensus 320 IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred EEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 99998753 48999999 996 89999999999999987666543221 2334566677776653
No 108
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.56 E-value=2.9e-14 Score=154.11 Aligned_cols=177 Identities=26% Similarity=0.397 Sum_probs=130.9
Q ss_pred cccccchhhhhhhhhhcCcCCChhhhhhc-cCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchh-hhccC-c
Q 003691 478 DIGGLDNVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFG-E 554 (802)
Q Consensus 478 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~-~~~vg-~ 554 (802)
.|.|+++.|+.+..++............+ .-..++++||+||||||||++|+++|..++.+|+.+++..+. ..|+| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 47899999988876655321111110000 112457899999999999999999999999999999999887 47888 5
Q ss_pred cHHHHHHHHHHHh-------------------------------------------------------------------
Q 003691 555 SEANVREIFDKAR------------------------------------------------------------------- 567 (802)
Q Consensus 555 se~~i~~lf~~a~------------------------------------------------------------------- 567 (802)
.+..++.+|+.|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 6777777777660
Q ss_pred ------------------------------------------------------------------------hCCCeEEE
Q 003691 568 ------------------------------------------------------------------------QSAPCVLF 575 (802)
Q Consensus 568 ------------------------------------------------------------------------~~~p~il~ 575 (802)
.....|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01235999
Q ss_pred EcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC--------CCCcEEEEEecC----CCCCCCccccCCCCcceEE
Q 003691 576 FDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--------AKKTVFIIGATN----RPDIIDPALLRPGRLDQLI 643 (802)
Q Consensus 576 iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--------~~~~v~vi~aTn----~~~~ld~allr~gRf~~~i 643 (802)
|||||.++.+.++.+. +-....|...||..|+|-. ..+++++||+.- .|+.|-|.|. |||..++
T Consensus 253 iDEiDKIa~~~~~~~~--DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 328 (441)
T TIGR00390 253 IDEIDKIAKKGESSGA--DVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRV 328 (441)
T ss_pred EEchhhhcccCCCCCC--CCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 9999999976533222 2234558999999999842 346788888873 5666778888 7999999
Q ss_pred EecCCCHHHHHHHHH
Q 003691 644 YIPLPDEASRLQIFK 658 (802)
Q Consensus 644 ~~~~p~~~~r~~Il~ 658 (802)
.+.+++.++...||.
T Consensus 329 ~L~~L~~edL~rILt 343 (441)
T TIGR00390 329 ELQALTTDDFERILT 343 (441)
T ss_pred ECCCCCHHHHHHHhc
Confidence 999999999999983
No 109
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.56 E-value=7.4e-14 Score=168.25 Aligned_cols=164 Identities=23% Similarity=0.329 Sum_probs=123.5
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh--------
Q 003691 204 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM-------- 275 (802)
Q Consensus 204 ~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~-------- 275 (802)
+++.|++++++.|.+++......+ -..+..++|+||||||||++|+++|+.++.+++.+++..+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 358999999999998876532221 12345799999999999999999999999999888754321
Q ss_pred -hhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcc-----c--------CCCcE
Q 003691 276 -SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGL-----K--------SRAHV 341 (802)
Q Consensus 276 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-----~--------~~~~v 341 (802)
..|.|.....+...|..+....| ++||||||.+.+..... ..+.|+..||.. . ...++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 24566666677778887765555 89999999998643221 124566655531 1 11468
Q ss_pred EEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHh
Q 003691 342 IVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT 385 (802)
Q Consensus 342 ivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~ 385 (802)
++|+|+|.++.+++++++ || ..|+++.|+.+++.+|++.++
T Consensus 465 ~~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHH
Confidence 899999999999999998 88 478999999999999998764
No 110
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.55 E-value=6.6e-14 Score=166.85 Aligned_cols=204 Identities=22% Similarity=0.344 Sum_probs=141.9
Q ss_pred ccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchh--------
Q 003691 477 EDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 548 (802)
Q Consensus 477 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~-------- 548 (802)
+++.|++++|+.+.+.+..... .+......++|+||||||||++++.+|+.++.+|+.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4588999999999876653211 1112334599999999999999999999999999888755432
Q ss_pred -hhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhcc-------------CCC
Q 003691 549 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM-------------NAK 614 (802)
Q Consensus 549 -~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~-------------~~~ 614 (802)
..|+|.....+...+..+....| |+||||||.+..... ....+.||..||.- ...
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~----------g~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR----------GDPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC----------CCHHHHHHHHhccccEEEEecccccccccC
Confidence 24777777777777777665555 899999999864311 11356777777741 123
Q ss_pred CcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc-----CCCCC---ccC---HHHHHH-HccCC
Q 003691 615 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK-----SPISP---DVD---LSALAR-YTHGF 682 (802)
Q Consensus 615 ~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~-----~~~~~---~~~---~~~la~-~t~g~ 682 (802)
+++++|||+|.. .|+|+|+. ||. +|.+++++.++..+|.+.++.. ..+.. ..+ +..+++ ++..+
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~ 539 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREA 539 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCccc
Confidence 689999999987 49999998 996 8999999999999999988831 11111 111 334443 23333
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 003691 683 SGADITEVCQRACKYAIREN 702 (802)
Q Consensus 683 sg~di~~~~~~a~~~a~~~~ 702 (802)
-.+.|+.+++..+..++.+.
T Consensus 540 GaR~LeR~I~~i~r~~l~~~ 559 (784)
T PRK10787 540 GVRSLEREISKLCRKAVKQL 559 (784)
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 34677777777665555543
No 111
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.55 E-value=2e-14 Score=155.56 Aligned_cols=177 Identities=25% Similarity=0.407 Sum_probs=131.1
Q ss_pred cccccchhhhhhhhhhcCcCCChhhhhhccC-CCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhh-hccC-c
Q 003691 478 DIGGLDNVKRELQETVQYPVEHPEKFEKFGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFG-E 554 (802)
Q Consensus 478 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~-~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~-~~vg-~ 554 (802)
.|.|++++|+.+..++............... ..+.++||+||||||||++|+++|..++.+|+.+++.++.. .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 4889999999887766421111100001000 12477999999999999999999999999999999998885 7999 4
Q ss_pred cHHHHHHHHHHHh-------------------------------------------------------------------
Q 003691 555 SEANVREIFDKAR------------------------------------------------------------------- 567 (802)
Q Consensus 555 se~~i~~lf~~a~------------------------------------------------------------------- 567 (802)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4677777777771
Q ss_pred ---h--------------------------------------------------------------------CCCeEEEE
Q 003691 568 ---Q--------------------------------------------------------------------SAPCVLFF 576 (802)
Q Consensus 568 ---~--------------------------------------------------------------------~~p~il~i 576 (802)
. ..-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 02249999
Q ss_pred cccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC--------CCCcEEEEEec----CCCCCCCccccCCCCcceEEE
Q 003691 577 DELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--------AKKTVFIIGAT----NRPDIIDPALLRPGRLDQLIY 644 (802)
Q Consensus 577 DEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--------~~~~v~vi~aT----n~~~~ld~allr~gRf~~~i~ 644 (802)
||||.++...++++. +-....|...||..|+|-. ..+++++||+. ..|+.|-|.|. |||..++.
T Consensus 256 DEiDKIa~~~~~~~~--DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 331 (443)
T PRK05201 256 DEIDKIAARGGSSGP--DVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVE 331 (443)
T ss_pred EcchhhcccCCCCCC--CCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 999999976543222 2334558999999999842 34678888876 35677778888 69999999
Q ss_pred ecCCCHHHHHHHHH
Q 003691 645 IPLPDEASRLQIFK 658 (802)
Q Consensus 645 ~~~p~~~~r~~Il~ 658 (802)
+.+++.+....||.
T Consensus 332 L~~L~~~dL~~ILt 345 (443)
T PRK05201 332 LDALTEEDFVRILT 345 (443)
T ss_pred CCCCCHHHHHHHhc
Confidence 99999999999983
No 112
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.55 E-value=5.3e-14 Score=161.93 Aligned_cols=210 Identities=24% Similarity=0.330 Sum_probs=144.2
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh----------CCeEEEE
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 542 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~----------~~~~i~v 542 (802)
..+|+++.|++...+.++..+.. ..+.+++|+||||||||++|+++..++ +.+|+.+
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 46788999999888887754321 224579999999999999999998753 3578999
Q ss_pred eCcch-------hhhccCccHHHH----------------HHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHH
Q 003691 543 KGPEL-------LTMWFGESEANV----------------REIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADR 599 (802)
Q Consensus 543 ~~~~l-------~~~~vg~se~~i----------------~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~ 599 (802)
++... ....+|.....+ ...+..+ ...+||||||+.+- ..
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~--------------~~ 190 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELH--------------PV 190 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCC--------------HH
Confidence 87531 111111100000 0112222 23599999999974 34
Q ss_pred HHHHHHHHhhccC---------------------------CCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHH
Q 003691 600 VLNQLLTEMDGMN---------------------------AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEAS 652 (802)
Q Consensus 600 vl~~lL~~ld~~~---------------------------~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~ 652 (802)
.++.||..|+... +.+-.+|++|||.|+.|+|++++ |+. .++|++++.++
T Consensus 191 ~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~ee 267 (531)
T TIGR02902 191 QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEE 267 (531)
T ss_pred HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHH
Confidence 5677777665310 11224566677889999999998 986 78899999999
Q ss_pred HHHHHHHHhccCCCCCc-cCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcccccccccccccc
Q 003691 653 RLQIFKACLRKSPISPD-VDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEI 731 (802)
Q Consensus 653 r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 731 (802)
+.+|++..+++..+.-+ ..++.++.++ .+++++.++++.|+..|..+. ...|
T Consensus 268 i~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~-------------------------~~~I 320 (531)
T TIGR02902 268 IKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEG-------------------------RKRI 320 (531)
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCC-------------------------CcEE
Confidence 99999999987654422 2245556544 489999999999998776532 1269
Q ss_pred cHHHHHHHHhh
Q 003691 732 KAVHFEESMKY 742 (802)
Q Consensus 732 ~~~~f~~al~~ 742 (802)
+.+|++.++..
T Consensus 321 t~~dI~~vl~~ 331 (531)
T TIGR02902 321 LAEDIEWVAEN 331 (531)
T ss_pred cHHHHHHHhCC
Confidence 99999999864
No 113
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=5.8e-14 Score=155.64 Aligned_cols=185 Identities=19% Similarity=0.262 Sum_probs=132.7
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe--------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 538 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~-------------- 538 (802)
+.+|+++.|++.+...|...+... +.+..+||+||+||||||+|+++|..+...
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 468999999999999888776531 234568999999999999999999998642
Q ss_pred ----------EEEEeCcchhhhccCccHHHHHHHHHHHh----hCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHH
Q 003691 539 ----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 604 (802)
Q Consensus 539 ----------~i~v~~~~l~~~~vg~se~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 604 (802)
++.+++.. ......++++.+.+. .....|+||||+|.+- ...++.|
T Consensus 82 ~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------------~~A~NAL 141 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------------DQSFNAL 141 (484)
T ss_pred HHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------------HHHHHHH
Confidence 33333211 011334555554443 3456799999999983 3468889
Q ss_pred HHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCC
Q 003691 605 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFS 683 (802)
Q Consensus 605 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~s 683 (802)
|..|+. +...+++|.+|+.++.|.+++++ |+. .++|.+++.++..+.++..+.+..+. ++..+..+++.++| +
T Consensus 142 LKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d 215 (484)
T PRK14956 142 LKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-S 215 (484)
T ss_pred HHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-h
Confidence 999984 45678888999999999999998 996 78999999988888888887765443 22335667766654 4
Q ss_pred HHHHHHHHHHHH
Q 003691 684 GADITEVCQRAC 695 (802)
Q Consensus 684 g~di~~~~~~a~ 695 (802)
.++.-+++..+.
T Consensus 216 ~RdAL~lLeq~i 227 (484)
T PRK14956 216 VRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 114
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=2.5e-13 Score=153.28 Aligned_cols=184 Identities=20% Similarity=0.300 Sum_probs=130.2
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC--------------
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 537 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~-------------- 537 (802)
.+.+|+++.|++++++.|...+... ..+.+++|+|||||||||+|+++|..+..
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 3568999999999998888766531 34556999999999999999999998754
Q ss_pred ----------eEEEEeCcchhhhccCccHHHHHHHHHHHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHH
Q 003691 538 ----------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 603 (802)
Q Consensus 538 ----------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~ 603 (802)
.++.++++.- ..-..++.+.+.+.. ....|+|+||+|.+. ...++.
T Consensus 77 c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------------~~a~~~ 136 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------------KEAFNA 136 (472)
T ss_pred HHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------------HHHHHH
Confidence 3455544321 123456666655543 234699999999983 234678
Q ss_pred HHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCC
Q 003691 604 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGF 682 (802)
Q Consensus 604 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g~ 682 (802)
||..|+.. .+.+++|++|+.+..+.+++.+ |+. .+.|.+|+.++...+++..++..++.- +..+..|++.+.|
T Consensus 137 LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G- 210 (472)
T PRK14962 137 LLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG- 210 (472)
T ss_pred HHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-
Confidence 88888853 3467777777778899999998 885 899999999999999998886544321 2236677775543
Q ss_pred CHHHHHHHHHH
Q 003691 683 SGADITEVCQR 693 (802)
Q Consensus 683 sg~di~~~~~~ 693 (802)
+.+++.+.+..
T Consensus 211 dlR~aln~Le~ 221 (472)
T PRK14962 211 GLRDALTMLEQ 221 (472)
T ss_pred CHHHHHHHHHH
Confidence 44444444444
No 115
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.55 E-value=7.2e-14 Score=153.68 Aligned_cols=223 Identities=19% Similarity=0.285 Sum_probs=147.4
Q ss_pred cccccchhhhhhhhhhcCcCCChhh----hhhccCC-CCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchh-hhc
Q 003691 478 DIGGLDNVKRELQETVQYPVEHPEK----FEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMW 551 (802)
Q Consensus 478 ~i~g~~~~k~~l~~~i~~~~~~~~~----~~~~~~~-~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~-~~~ 551 (802)
.|.|++++++.+...+....+.... ...-+.. ...++||+||||||||++|+++|..++.+|..+++..+. ..|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 4789999999887665211111000 0000111 134699999999999999999999999999999988775 368
Q ss_pred cCcc-HHHHHHHHHHH----hhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC-----------CCC
Q 003691 552 FGES-EANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKK 615 (802)
Q Consensus 552 vg~s-e~~i~~lf~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~ 615 (802)
+|+. +..+..+++.+ ....++||||||||.+...+.......+-....+++.||+.|+|.. +..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 8986 44455555533 2345689999999999876543222212223468999999998742 123
Q ss_pred cEEEEEecCCCC--------------------------------------------------CCCccccCCCCcceEEEe
Q 003691 616 TVFIIGATNRPD--------------------------------------------------IIDPALLRPGRLDQLIYI 645 (802)
Q Consensus 616 ~v~vi~aTn~~~--------------------------------------------------~ld~allr~gRf~~~i~~ 645 (802)
+.++|.|+|-.. -+.|+++ ||+|.+++|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeec
Confidence 578888888610 0335566 599999999
Q ss_pred cCCCHHHHHHHHHHH----hccC-------CCCCcc---CHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHH
Q 003691 646 PLPDEASRLQIFKAC----LRKS-------PISPDV---DLSALARY--THGFSGADITEVCQRACKYAIREN 702 (802)
Q Consensus 646 ~~p~~~~r~~Il~~~----l~~~-------~~~~~~---~~~~la~~--t~g~sg~di~~~~~~a~~~a~~~~ 702 (802)
.+.+.++..+|+... ++++ .+.-.. -+..|++. ...+-.+.|+.++++....++.+.
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 999999999998753 2221 121111 24566654 334556788888888887776654
No 116
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=5.4e-14 Score=155.01 Aligned_cols=185 Identities=20% Similarity=0.298 Sum_probs=129.0
Q ss_pred ccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe----------------
Q 003691 475 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN---------------- 538 (802)
Q Consensus 475 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~---------------- 538 (802)
.|++|+|++.+++.|+..+..+..+. ...+...+.++||+||+|+|||++|+++|..+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 58999999999999999988654322 22344467789999999999999999999876432
Q ss_pred -------EEEEeCcchhhhccCccHHHHHHHHHHHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHH
Q 003691 539 -------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTE 607 (802)
Q Consensus 539 -------~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ 607 (802)
+..+.... .+ -.-..|+.+++.+.. ....|+||||+|.+. ....|.||+.
T Consensus 80 ~~~~hpD~~~i~~~~-~~----i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~--------------~~aanaLLk~ 140 (394)
T PRK07940 80 LAGTHPDVRVVAPEG-LS----IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT--------------ERAANALLKA 140 (394)
T ss_pred hcCCCCCEEEecccc-cc----CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC--------------HHHHHHHHHH
Confidence 12221111 01 123457888877654 334699999999983 2345889999
Q ss_pred hhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHH
Q 003691 608 MDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADI 687 (802)
Q Consensus 608 ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di 687 (802)
|+.. ..++++|.+|+.++.|.|.+++ |+. .++|++|+.++..+++.... .++ ......++..+.|..+..+
T Consensus 141 LEep--~~~~~fIL~a~~~~~llpTIrS--Rc~-~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 141 VEEP--PPRTVWLLCAPSPEDVLPTIRS--RCR-HVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRAR 211 (394)
T ss_pred hhcC--CCCCeEEEEECChHHChHHHHh--hCe-EEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHH
Confidence 9853 3334444445458999999998 884 99999999998888776322 333 2345678888888777665
Q ss_pred HHH
Q 003691 688 TEV 690 (802)
Q Consensus 688 ~~~ 690 (802)
..+
T Consensus 212 ~l~ 214 (394)
T PRK07940 212 RLA 214 (394)
T ss_pred HHh
Confidence 543
No 117
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.54 E-value=1.2e-13 Score=139.24 Aligned_cols=182 Identities=23% Similarity=0.393 Sum_probs=138.5
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003691 197 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 276 (802)
Q Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~ 276 (802)
.+.+-.|++..|+++.++++.-+++....+. ....|+||+||||.||||||+.+|++++..+...+|+.+-
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le- 89 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE- 89 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc-
Confidence 4667889999999999999988887543332 3457899999999999999999999999998888887662
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccC----------------CCc
Q 003691 277 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKS----------------RAH 340 (802)
Q Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~----------------~~~ 340 (802)
...-+-.++... ...+|+||||||.+.+. +.+.|...|+.++- -++
T Consensus 90 -----K~gDlaaiLt~L--e~~DVLFIDEIHrl~~~-----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 90 -----KPGDLAAILTNL--EEGDVLFIDEIHRLSPA-----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred -----ChhhHHHHHhcC--CcCCeEEEehhhhcChh-----------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 222334444443 33479999999998643 33556666765431 147
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCCc
Q 003691 341 VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 407 (802)
Q Consensus 341 vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 407 (802)
+.+||+|.+...+...|+. ||.....+..++.++..+|+....+.+.+. ++....++|.++.|.-
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTP 217 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTP 217 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCc
Confidence 8999999999999999998 999999999999999999998776655543 2334667888877753
No 118
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.54 E-value=1.4e-13 Score=145.38 Aligned_cols=175 Identities=29% Similarity=0.470 Sum_probs=125.3
Q ss_pred cccCCCCcccccChHHHHH---HHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEech
Q 003691 196 ERLNEVGYDDVGGVRKQMA---QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGP 272 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~---~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~ 272 (802)
.++.+-+++++.|+++.+. -|+++++. ..-.+++|||||||||||||++||+.++..|..+++.
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 4567889999999998873 46777754 3345799999999999999999999999999999863
Q ss_pred hhhhhccchhHHHHHHHHHHHHhc----CCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEec-
Q 003691 273 EIMSKLAGESESNLRKAFEEAEKN----APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGAT- 347 (802)
Q Consensus 273 ~l~~~~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~t- 347 (802)
. ..-+.++.++++++.. ...|||+|||+.+-...+ ..|+..++ ++.|++||+|
T Consensus 83 ~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ-----------D~lLp~vE----~G~iilIGATT 140 (436)
T COG2256 83 T-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ-----------DALLPHVE----NGTIILIGATT 140 (436)
T ss_pred c-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh-----------hhhhhhhc----CCeEEEEeccC
Confidence 2 3456789999998553 258999999999854432 44565554 4677888765
Q ss_pred -CCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHh--ccCccc------cchhhHHHHhhcCCCch
Q 003691 348 -NRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT--KNMKLA------EDVDLERVAKDTHGYVG 408 (802)
Q Consensus 348 -n~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~--~~~~l~------~~~~l~~la~~t~g~~~ 408 (802)
|+--.+.+++++ |. +.+++.+.+.++...+++..+ ....+. ++.-+..++..+.|-..
T Consensus 141 ENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 141 ENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred CCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 444588999998 43 457888999988888887622 122222 23345566666665433
No 119
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.53 E-value=3.3e-13 Score=147.20 Aligned_cols=192 Identities=22% Similarity=0.372 Sum_probs=135.3
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003691 197 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS 276 (802)
Q Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~ 276 (802)
++.+..|+++.|.++.++.+..++...... -.++.+++|+||||||||++|+++|++++..+..++++.+.
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~- 88 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE- 88 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc-
Confidence 566779999999999999998887532111 13467899999999999999999999999888777765432
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhccc----------------CCCc
Q 003691 277 KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAH 340 (802)
Q Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~ 340 (802)
....+..++... ..++++||||+|.+... . .+.|...|+... .-..
T Consensus 89 -----~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-------~----~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 89 -----KPGDLAAILTNL--EEGDVLFIDEIHRLSPV-------V----EEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred -----ChHHHHHHHHhc--ccCCEEEEecHhhcchH-------H----HHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 112333444432 34679999999988532 1 122333333221 1134
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCCchHHHHHHHHHH
Q 003691 341 VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCTEA 418 (802)
Q Consensus 341 vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~A 418 (802)
+.+|++|+++..+++.+++ ||...+.++.|+.+++.+|++.......+. ++..+..++..+.|+. +.+..+++.+
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~ 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRV 226 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHH
Confidence 7889999999999999987 888889999999999999999776654432 3334788888888865 4444444443
No 120
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2e-13 Score=154.98 Aligned_cols=186 Identities=21% Similarity=0.286 Sum_probs=135.9
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC---------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 537 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~--------------- 537 (802)
+.+|+++.|++.+++.|...+.. -+.+..+||+||+|+|||++|+++|+.+.+
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 46899999999999999887652 134567899999999999999999999754
Q ss_pred ---------eEEEEeCcchhhhccCccHHHHHHHHHHHh----hCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHH
Q 003691 538 ---------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 604 (802)
Q Consensus 538 ---------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 604 (802)
.++.+++++- ..-..++.+...+. .....|+||||+|.+- ....+.|
T Consensus 79 ~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS--------------~~A~NAL 138 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS--------------THSFNAL 138 (702)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC--------------HHHHHHH
Confidence 3444444321 12345666665543 2345799999999873 2357889
Q ss_pred HHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCCC
Q 003691 605 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFS 683 (802)
Q Consensus 605 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~s 683 (802)
|..|+.. ...+.+|.+|+.+..+.+.+++ |+. ++.|.+++.++..+.++..+.+..+.-+ ..+..+++.+.| +
T Consensus 139 LKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-d 212 (702)
T PRK14960 139 LKTLEEP--PEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-S 212 (702)
T ss_pred HHHHhcC--CCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999853 3456777777778888888886 885 8999999999999999988876554422 236677776654 6
Q ss_pred HHHHHHHHHHHHH
Q 003691 684 GADITEVCQRACK 696 (802)
Q Consensus 684 g~di~~~~~~a~~ 696 (802)
.+++.+++..+..
T Consensus 213 LRdALnLLDQaIa 225 (702)
T PRK14960 213 LRDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766554
No 121
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.53 E-value=2.3e-13 Score=151.18 Aligned_cols=202 Identities=24% Similarity=0.304 Sum_probs=129.5
Q ss_pred ccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhC---------CeEEEEeCcch
Q 003691 477 EDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPEL 547 (802)
Q Consensus 477 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~---------~~~i~v~~~~l 547 (802)
+++.|.++..+.|...+..... + ..+.+++++||||||||+++++++..+. ..++.+++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 4677888777777665542111 1 2345699999999999999999998753 46788887654
Q ss_pred hhh----------cc--Cc-------c-HHHHHHHHHHHhh-CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHH
Q 003691 548 LTM----------WF--GE-------S-EANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLT 606 (802)
Q Consensus 548 ~~~----------~v--g~-------s-e~~i~~lf~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~ 606 (802)
.+. .. |. + .+....+++.... ..+.|++|||+|.+... ...++..|+.
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~~l~~ 154 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLYQLSR 154 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHHhHhc
Confidence 321 10 11 1 2234455554432 44679999999999621 1235666665
Q ss_pred Hhhcc-CCCCcEEEEEecCCCC---CCCccccCCCCcc-eEEEecCCCHHHHHHHHHHHhccCC---CCCccCHHHHHHH
Q 003691 607 EMDGM-NAKKTVFIIGATNRPD---IIDPALLRPGRLD-QLIYIPLPDEASRLQIFKACLRKSP---ISPDVDLSALARY 678 (802)
Q Consensus 607 ~ld~~-~~~~~v~vi~aTn~~~---~ld~allr~gRf~-~~i~~~~p~~~~r~~Il~~~l~~~~---~~~~~~~~~la~~ 678 (802)
..+.. ....++.+|+++|.++ .+++.+.+ ||. ..++|++|+.++..+|++..++... .-++.-++.++..
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~ 232 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAAL 232 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHH
Confidence 52221 2235789999999886 47888877 775 6899999999999999998886311 1112123444443
Q ss_pred c---cCCCHHHHHHHHHHHHHHHHHH
Q 003691 679 T---HGFSGADITEVCQRACKYAIRE 701 (802)
Q Consensus 679 t---~g~sg~di~~~~~~a~~~a~~~ 701 (802)
. .| ..+.+..+|+.|+..|..+
T Consensus 233 ~~~~~G-d~R~al~~l~~a~~~a~~~ 257 (365)
T TIGR02928 233 AAQEHG-DARKAIDLLRVAGEIAERE 257 (365)
T ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHc
Confidence 3 33 3455566888888877654
No 122
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.8e-13 Score=158.20 Aligned_cols=185 Identities=21% Similarity=0.284 Sum_probs=133.1
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeE-------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF------------- 539 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~------------- 539 (802)
+.+|++|.|++.+++.|+..+... +.+..+||+||+|||||++|+++|+.+.+..
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 468999999999999988776531 3345579999999999999999999986531
Q ss_pred -----------EEEeCcchhhhccCccHHHHHHHHHHHh----hCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHH
Q 003691 540 -----------ISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 604 (802)
Q Consensus 540 -----------i~v~~~~l~~~~vg~se~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 604 (802)
+.+++.+ ...-..+|.+.+.+. .....|+||||+|.+- ...++.|
T Consensus 80 ~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------------~eAqNAL 139 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------------RSSFNAL 139 (944)
T ss_pred HHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------------HHHHHHH
Confidence 1222211 011234555554433 3445799999999982 4578999
Q ss_pred HHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCC
Q 003691 605 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFS 683 (802)
Q Consensus 605 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g~s 683 (802)
|+.|+. ....+.+|++|+.+..|.+.+++ |+ .++.|.+++.++..+.++..+....+.- +..+..|++.+.| +
T Consensus 140 LKtLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d 213 (944)
T PRK14949 140 LKTLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-S 213 (944)
T ss_pred HHHHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 999995 34566777778888888888887 88 4899999999999999988886544332 2236677776664 5
Q ss_pred HHHHHHHHHHHH
Q 003691 684 GADITEVCQRAC 695 (802)
Q Consensus 684 g~di~~~~~~a~ 695 (802)
.+++.++|..+.
T Consensus 214 ~R~ALnLLdQal 225 (944)
T PRK14949 214 MRDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHHH
Confidence 778778887665
No 123
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=4.4e-13 Score=147.95 Aligned_cols=186 Identities=22% Similarity=0.296 Sum_probs=133.3
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe--------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 538 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~-------------- 538 (802)
+.+|+++.|++.+++.|+..+... +.+..++|+||+|+|||++|+++|..+...
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 468999999999999988776531 345568999999999999999999987532
Q ss_pred ----------EEEEeCcchhhhccCccHHHHHHHHHHHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHH
Q 003691 539 ----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 604 (802)
Q Consensus 539 ----------~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 604 (802)
++.+++.. ...-..++.+.+.+.. ....|+||||+|.+- ....+.|
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------------~~a~naL 139 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------------RHSFNAL 139 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------HHHHHHH
Confidence 22232211 0123456666665543 234699999999872 3456788
Q ss_pred HHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCC
Q 003691 605 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFS 683 (802)
Q Consensus 605 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~s 683 (802)
|..|+.. ...+.+|.+|+.++.+.+++.+ |+ ..+.|++|+.++..++++..+++.+.. ++..+..+++.+.| +
T Consensus 140 Lk~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~ 213 (363)
T PRK14961 140 LKTLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-S 213 (363)
T ss_pred HHHHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9988853 4456667777778889888886 88 488999999999999999888766543 22345677777654 6
Q ss_pred HHHHHHHHHHHHH
Q 003691 684 GADITEVCQRACK 696 (802)
Q Consensus 684 g~di~~~~~~a~~ 696 (802)
.+++.+++..+..
T Consensus 214 ~R~al~~l~~~~~ 226 (363)
T PRK14961 214 MRDALNLLEHAIN 226 (363)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776653
No 124
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.52 E-value=1.3e-13 Score=156.72 Aligned_cols=173 Identities=20% Similarity=0.319 Sum_probs=122.0
Q ss_pred ceeeeecCCCCchhHHHHHHHHHh-----CCeEEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhcc
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 586 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r 586 (802)
..++||||+|||||+|++++++++ +..++++++.++.+.++.........-|..... .+.+|+||||+.+.+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~- 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK- 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC-
Confidence 459999999999999999999997 456888999888766544332221222332222 3579999999998542
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCC---CCccccCCCCcc--eEEEecCCCHHHHHHHHHHHh
Q 003691 587 GSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEASRLQIFKACL 661 (802)
Q Consensus 587 ~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~Il~~~l 661 (802)
......|+..++.+...++.+||+++..|.. +++.+.+ ||. ..+.+.+|+.++|.+|++..+
T Consensus 227 -----------~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 227 -----------ERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred -----------HHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 1233456666665544455677777776655 6788886 996 589999999999999999998
Q ss_pred ccCC--CCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q 003691 662 RKSP--ISPDVDLSALARYTHGFSGADITEVCQRACKYAIRE 701 (802)
Q Consensus 662 ~~~~--~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~ 701 (802)
...+ ++++ -++.||+... -+.+++..++......|...
T Consensus 294 ~~~~~~l~~e-~l~~ia~~~~-~~~R~l~~~l~~l~~~~~~~ 333 (450)
T PRK00149 294 EEEGIDLPDE-VLEFIAKNIT-SNVRELEGALNRLIAYASLT 333 (450)
T ss_pred HHcCCCCCHH-HHHHHHcCcC-CCHHHHHHHHHHHHHHHHhh
Confidence 7544 3333 3677777654 36788888888877666543
No 125
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.52 E-value=5.4e-13 Score=144.37 Aligned_cols=188 Identities=23% Similarity=0.352 Sum_probs=129.9
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhccch
Q 003691 202 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281 (802)
Q Consensus 202 ~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~~~g~ 281 (802)
+|+++.|+++.++.|+.++......+ ..+.+++|+||||||||+|++++|.+++..+..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 58899999999999988886422111 33567999999999999999999999988776665543221
Q ss_pred hHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhccc----------------CCCcEEEEE
Q 003691 282 SESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAHVIVMG 345 (802)
Q Consensus 282 ~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~vivI~ 345 (802)
...+...+... ..+.++||||++.+.+.. .+.|...|+... ....+.+++
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~-----------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPAV-----------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHHH-----------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11222222222 346799999999885421 122444443221 113478889
Q ss_pred ecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCCchHHHHHHHHHHH
Q 003691 346 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCTEAA 419 (802)
Q Consensus 346 ~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~A~ 419 (802)
+|+++..+++++++ ||...+.+..|+.++..++++.......+. ++..+..++..+.|+. ..+..++..+.
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~ 206 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVR 206 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 99999999999987 888888999999999999998776543332 3345678888888876 33455555443
No 126
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.51 E-value=1.7e-13 Score=153.89 Aligned_cols=174 Identities=20% Similarity=0.330 Sum_probs=121.0
Q ss_pred CceeeeecCCCCchhHHHHHHHHHh-----CCeEEEEeCcchhhhccCccHH-HHHHHHHHHhhCCCeEEEEcccchhhh
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEA-NVREIFDKARQSAPCVLFFDELDSIAT 584 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~-----~~~~i~v~~~~l~~~~vg~se~-~i~~lf~~a~~~~p~il~iDEid~l~~ 584 (802)
...++||||+|+|||+|++++++++ +..++++++.++...+...... .+....+..+ .+.+|+|||++.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 3458999999999999999999987 4678889988877655432211 1222222222 246999999999854
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCC---CCccccCCCCcc--eEEEecCCCHHHHHHHHHH
Q 003691 585 QRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEASRLQIFKA 659 (802)
Q Consensus 585 ~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~Il~~ 659 (802)
. ......|+..++.....++.+||+++..|+. +++.+.+ ||. ..+.+++|+.++|..|++.
T Consensus 214 ~------------~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 214 K------------ERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred C------------HHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHH
Confidence 2 1223445555555444445577777766754 5677876 886 5799999999999999999
Q ss_pred HhccCCCCC-ccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q 003691 660 CLRKSPISP-DVDLSALARYTHGFSGADITEVCQRACKYAIRE 701 (802)
Q Consensus 660 ~l~~~~~~~-~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~ 701 (802)
.++..++.- +.-++.||+... -+.+++..++......|...
T Consensus 280 ~~~~~~~~l~~e~l~~ia~~~~-~~~r~l~~~l~~l~~~a~~~ 321 (405)
T TIGR00362 280 KAEEEGLELPDEVLEFIAKNIR-SNVRELEGALNRLLAYASLT 321 (405)
T ss_pred HHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHh
Confidence 987655432 223677787655 47889999988887776543
No 127
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.51 E-value=6.7e-14 Score=169.60 Aligned_cols=185 Identities=23% Similarity=0.348 Sum_probs=137.7
Q ss_pred cccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh----------CCeEEEEe
Q 003691 474 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 543 (802)
Q Consensus 474 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~----------~~~~i~v~ 543 (802)
-.|+.+.|.+...+.+.+.+.. +...+++|+||||||||++|+.+|..+ +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 4577788888777777665432 345679999999999999999999986 36789999
Q ss_pred Ccchh--hhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEE
Q 003691 544 GPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 621 (802)
Q Consensus 544 ~~~l~--~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~ 621 (802)
...++ .+|.|+.++.++.+|+.+....++||||||||.+.+.++..+ . ..+.+.|...+. ++.+.+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g-~-----~~~a~lLkp~l~----rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEG-A-----IDAANILKPALA----RGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCC-c-----ccHHHHhHHHHh----CCCcEEEE
Confidence 98887 578999999999999999888889999999999987654221 1 112233333333 56789999
Q ss_pred ecCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc----CCCC-CccCHHHHHHHccCCCH
Q 003691 622 ATNRPD-----IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK----SPIS-PDVDLSALARYTHGFSG 684 (802)
Q Consensus 622 aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~----~~~~-~~~~~~~la~~t~g~sg 684 (802)
+|+..+ ..|+++.| ||. .|.++.|+.++...|++..... ..+. ++.-+..++..+.+|-+
T Consensus 313 aTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred eCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 999764 47999999 997 6899999999999998765432 1222 22335667777776654
No 128
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.51 E-value=4e-13 Score=150.87 Aligned_cols=203 Identities=23% Similarity=0.311 Sum_probs=129.8
Q ss_pred ccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh-----CCeEEEEeCcchhh--
Q 003691 477 EDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLT-- 549 (802)
Q Consensus 477 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~-----~~~~i~v~~~~l~~-- 549 (802)
+.+.|-++..+.|...+..... + ..+..++++||||||||++++.++..+ +..++.+++....+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 4455666555555554431110 1 234569999999999999999999887 46788898864422
Q ss_pred --------hccC-------cc-HHHHHHHHHHHhh-CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC
Q 003691 550 --------MWFG-------ES-EANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN 612 (802)
Q Consensus 550 --------~~vg-------~s-e~~i~~lf~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~ 612 (802)
...+ .+ ...+..+++.... ..+.||+|||+|.+... ....++..|+..++...
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~----------~~~~~l~~l~~~~~~~~ 170 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEK----------EGNDVLYSLLRAHEEYP 170 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhcc----------CCchHHHHHHHhhhccC
Confidence 1111 11 2223334443332 34679999999999721 12346777777776554
Q ss_pred CCCcEEEEEecCCCC---CCCccccCCCCcc-eEEEecCCCHHHHHHHHHHHhccCC---CCCccCHHHHHHHccCCC--
Q 003691 613 AKKTVFIIGATNRPD---IIDPALLRPGRLD-QLIYIPLPDEASRLQIFKACLRKSP---ISPDVDLSALARYTHGFS-- 683 (802)
Q Consensus 613 ~~~~v~vi~aTn~~~---~ld~allr~gRf~-~~i~~~~p~~~~r~~Il~~~l~~~~---~~~~~~~~~la~~t~g~s-- 683 (802)
. .++.+|+++|.++ .+++.+.+ ||. ..|+|++++.++..+|++..++... .-++..++.+++.+.+.+
T Consensus 171 ~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 171 G-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred C-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 2 3788889988764 46777765 663 5789999999999999998875421 112233567777765433
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003691 684 GADITEVCQRACKYAIRE 701 (802)
Q Consensus 684 g~di~~~~~~a~~~a~~~ 701 (802)
.+.+..+|..|+..|..+
T Consensus 248 ~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 248 ARVAIDLLRRAGLIAERE 265 (394)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 344457788887777654
No 129
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.51 E-value=1.2e-13 Score=167.86 Aligned_cols=185 Identities=22% Similarity=0.371 Sum_probs=134.7
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh----------CCeEEEE
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 542 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~----------~~~~i~v 542 (802)
+-.++.+.|.++....+.+.+. .+...+++|+||||||||++++++|..+ +.+++.+
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLS-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 3456778888775554444332 2334568999999999999999999886 5678888
Q ss_pred eCcchh--hhccCccHHHHHHHHHHHhhC-CCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEE
Q 003691 543 KGPELL--TMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFI 619 (802)
Q Consensus 543 ~~~~l~--~~~vg~se~~i~~lf~~a~~~-~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~v 619 (802)
+...+. .+|.|+.++.++.+|+.+... .++||||||||.+.+.+... + .....+.|...+ ..+.+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-----~-~~d~~~~Lk~~l----~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-----G-AMDAGNMLKPAL----ARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-----c-hhHHHHHhchhh----hcCceEE
Confidence 877775 578999999999999988653 58999999999998654321 1 122333333332 4667999
Q ss_pred EEecCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcc-----CHHHHHHHccCCC
Q 003691 620 IGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-----DLSALARYTHGFS 683 (802)
Q Consensus 620 i~aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-----~~~~la~~t~g~s 683 (802)
|++|+..+ .+|+++.| ||. .|+++.|+.+++..|++.....+.....+ .+..++..+.+|-
T Consensus 306 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 99999874 47999999 997 68999999999999999887666543332 3455566665553
No 130
>PRK04195 replication factor C large subunit; Provisional
Probab=99.50 E-value=2.4e-13 Score=155.73 Aligned_cols=191 Identities=25% Similarity=0.329 Sum_probs=133.9
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhcc
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 552 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~v 552 (802)
+.+++++.|.+.+++.|...+..... | .+++++||+||||||||++|+++|++++..++.+++++..+
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~--- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT--- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc---
Confidence 45788999999999999887653111 1 23678999999999999999999999999999999887532
Q ss_pred CccHHHHHHHHHHHhh------CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCC
Q 003691 553 GESEANVREIFDKARQ------SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 626 (802)
Q Consensus 553 g~se~~i~~lf~~a~~------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~ 626 (802)
...++.+...+.. ..+.+|||||+|.+... .....++.|+..++. .+..+|+++|.+
T Consensus 78 ---~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~----------~d~~~~~aL~~~l~~----~~~~iIli~n~~ 140 (482)
T PRK04195 78 ---ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN----------EDRGGARAILELIKK----AKQPIILTANDP 140 (482)
T ss_pred ---HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccc----------cchhHHHHHHHHHHc----CCCCEEEeccCc
Confidence 2233333333322 24679999999998531 112345666676663 233567788988
Q ss_pred CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 003691 627 DIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFSGADITEVCQRACKYA 698 (802)
Q Consensus 627 ~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g~sg~di~~~~~~a~~~a 698 (802)
..+.+..+| .|+ ..|.|++|+..++..+++..+.+.++.- +..+..|++.+ ++|++.+++.....+
T Consensus 141 ~~~~~k~Lr-sr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s----~GDlR~ain~Lq~~a 207 (482)
T PRK04195 141 YDPSLRELR-NAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERS----GGDLRSAINDLQAIA 207 (482)
T ss_pred cccchhhHh-ccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHh
Confidence 888873344 144 5899999999999999998886654432 23366677654 458888887776544
No 131
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=6.5e-13 Score=153.31 Aligned_cols=186 Identities=22% Similarity=0.308 Sum_probs=135.3
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe--------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 538 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~-------------- 538 (802)
..+|++|.|++.+++.|...+... +.+..+||+||+|+||||+|+++|..+.+.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 468999999999999998776531 334558999999999999999999998652
Q ss_pred ----------EEEEeCcchhhhccCccHHHHHHHHHHH----hhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHH
Q 003691 539 ----------FISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 604 (802)
Q Consensus 539 ----------~i~v~~~~l~~~~vg~se~~i~~lf~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 604 (802)
++.+++..- ..-..++.+.+.+ ......|+||||+|.+- ....|.|
T Consensus 80 ~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------------~~a~NAL 139 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNAL 139 (647)
T ss_pred HHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------------HHHHHHH
Confidence 344443320 1123455554443 23456799999999973 3468999
Q ss_pred HHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCCC
Q 003691 605 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFS 683 (802)
Q Consensus 605 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~s 683 (802)
|+.|+. +...+.+|.+|+.++.|.+.+++ |+ ..++|.+++.++....++..++...+..+ ..+..|++.++| +
T Consensus 140 LKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s 213 (647)
T PRK07994 140 LKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-S 213 (647)
T ss_pred HHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 999995 45567777778888899999887 87 59999999999999999988865544322 335667776664 5
Q ss_pred HHHHHHHHHHHHH
Q 003691 684 GADITEVCQRACK 696 (802)
Q Consensus 684 g~di~~~~~~a~~ 696 (802)
.++..+++..|..
T Consensus 214 ~R~Al~lldqaia 226 (647)
T PRK07994 214 MRDALSLTDQAIA 226 (647)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766543
No 132
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=9.3e-13 Score=149.11 Aligned_cols=189 Identities=19% Similarity=0.285 Sum_probs=141.0
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe-------------
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 538 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~------------- 538 (802)
.+.+|+++.|++.+.+.|...+.. -+.+.++||+||+||||||+|+++|+.+.+.
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 356899999999999988776542 1345679999999999999999999998542
Q ss_pred ---------------EEEEeCcchhhhccCccHHHHHHHHHHHhhC----CCeEEEEcccchhhhccCCCCCCCCCchHH
Q 003691 539 ---------------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADR 599 (802)
Q Consensus 539 ---------------~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~ 599 (802)
++.+++.. ..+...++.+.+.+... ...|+||||+|.+. ..
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------~~ 143 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------KG 143 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------HH
Confidence 22222211 12345678888777543 34699999999873 34
Q ss_pred HHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHH
Q 003691 600 VLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARY 678 (802)
Q Consensus 600 vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~ 678 (802)
.++.||..|+. +...+++|.+|+.++.+.+++++ |+. .++|.+++.++...+++..+++..+.-+ ..+..+++.
T Consensus 144 a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc~-~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 144 AFNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RCQ-RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK 218 (507)
T ss_pred HHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cce-EEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 57888988884 34567777778888899999987 884 8999999999999999999977655432 336778887
Q ss_pred ccCCCHHHHHHHHHHHHHHH
Q 003691 679 THGFSGADITEVCQRACKYA 698 (802)
Q Consensus 679 t~g~sg~di~~~~~~a~~~a 698 (802)
++| +.+++.+++..+...+
T Consensus 219 s~G-slR~al~~Ldkai~~~ 237 (507)
T PRK06645 219 SEG-SARDAVSILDQAASMS 237 (507)
T ss_pred cCC-CHHHHHHHHHHHHHhh
Confidence 765 7888888888876654
No 133
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1e-12 Score=147.62 Aligned_cols=188 Identities=19% Similarity=0.231 Sum_probs=140.4
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhC----------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------------- 536 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~---------------- 536 (802)
+.+|+++.|++.+++.|...+.. -+.+.++||+||+|+||||+|+++|..+.
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 46899999999999999876553 13466799999999999999999998652
Q ss_pred --------CeEEEEeCcchhhhccCccHHHHHHHHHHHhhC----CCeEEEEcccchhhhccCCCCCCCCCchHHHHHHH
Q 003691 537 --------ANFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 604 (802)
Q Consensus 537 --------~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 604 (802)
.+++.+++++- .+-..++.+.+.+... ...|++|||+|.+- ...++.|
T Consensus 77 ~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------------~~A~NaL 136 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------------NSAFNAL 136 (491)
T ss_pred HHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------HHHHHHH
Confidence 23456665431 2345677777766433 35799999999872 3467889
Q ss_pred HHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCC
Q 003691 605 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFS 683 (802)
Q Consensus 605 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g~s 683 (802)
|..|+.. ...+.+|.+|+.++.|.+.+++ |+. .+.|.+++.++..+.++..+.+.++.- +..+..+++.+. .+
T Consensus 137 LK~LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~-Gs 210 (491)
T PRK14964 137 LKTLEEP--APHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSS-GS 210 (491)
T ss_pred HHHHhCC--CCCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CC
Confidence 9999954 4467777777888888888887 885 799999999999999998887655442 234667777775 47
Q ss_pred HHHHHHHHHHHHHHH
Q 003691 684 GADITEVCQRACKYA 698 (802)
Q Consensus 684 g~di~~~~~~a~~~a 698 (802)
.+++.+++..+..++
T Consensus 211 lR~alslLdqli~y~ 225 (491)
T PRK14964 211 MRNALFLLEQAAIYS 225 (491)
T ss_pred HHHHHHHHHHHHHhc
Confidence 788888887776543
No 134
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=8e-13 Score=150.72 Aligned_cols=187 Identities=19% Similarity=0.241 Sum_probs=135.7
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe--------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 538 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~-------------- 538 (802)
+.+|+++.|++.+++.|...+.. -+.+..+||+||+|||||++|+++|+.+.+.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 46899999999999999887753 1345568999999999999999999988542
Q ss_pred ----------EEEEeCcchhhhccCccHHHHHHHHHHHh----hCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHH
Q 003691 539 ----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 604 (802)
Q Consensus 539 ----------~i~v~~~~l~~~~vg~se~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 604 (802)
++.++++. ...-..++++.+.+. .....|+||||+|.+- ...++.|
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------------~~a~naL 139 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------------GHSFNAL 139 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------------HHHHHHH
Confidence 45555432 122344666665543 2345799999999983 3357889
Q ss_pred HHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCC
Q 003691 605 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFS 683 (802)
Q Consensus 605 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g~s 683 (802)
|..|+.. ...+.+|.+|+.++.+.+.+++ |+. .+.|.+++.++....++..+++.++.- +..+..+++.+. -+
T Consensus 140 Lk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~-Gs 213 (509)
T PRK14958 140 LKTLEEP--PSHVKFILATTDHHKLPVTVLS--RCL-QFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAAN-GS 213 (509)
T ss_pred HHHHhcc--CCCeEEEEEECChHhchHHHHH--Hhh-hhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-Cc
Confidence 9999964 3456677777778888888877 884 788999999888888888887655442 223667777765 46
Q ss_pred HHHHHHHHHHHHHH
Q 003691 684 GADITEVCQRACKY 697 (802)
Q Consensus 684 g~di~~~~~~a~~~ 697 (802)
.+++.+++..+...
T Consensus 214 lR~al~lLdq~ia~ 227 (509)
T PRK14958 214 VRDALSLLDQSIAY 227 (509)
T ss_pred HHHHHHHHHHHHhc
Confidence 78888888776543
No 135
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.47 E-value=6.7e-13 Score=156.36 Aligned_cols=181 Identities=24% Similarity=0.353 Sum_probs=121.3
Q ss_pred ccccccccccchhhh---hhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhh
Q 003691 473 NVSWEDIGGLDNVKR---ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 549 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~---~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~ 549 (802)
+.+++++.|++.+.. .|+..+.. ....+++|+|||||||||+|+++|+.++..|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 457888999988764 34444331 123469999999999999999999999999988876421
Q ss_pred hccCccHHHHHHHHHHHh-----hCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecC
Q 003691 550 MWFGESEANVREIFDKAR-----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATN 624 (802)
Q Consensus 550 ~~vg~se~~i~~lf~~a~-----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn 624 (802)
..+.++.++..+. .....++||||||.+.. ...+.|+..++ .+.+++|++|+
T Consensus 89 -----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~--------------~qQdaLL~~lE----~g~IiLI~aTT 145 (725)
T PRK13341 89 -----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK--------------AQQDALLPWVE----NGTITLIGATT 145 (725)
T ss_pred -----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH--------------HHHHHHHHHhc----CceEEEEEecC
Confidence 1223444444432 12346999999999742 22455666665 34577777664
Q ss_pred C--CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc-------CCCC-CccCHHHHHHHccCCCHHHHHHHHHHH
Q 003691 625 R--PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRK-------SPIS-PDVDLSALARYTHGFSGADITEVCQRA 694 (802)
Q Consensus 625 ~--~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~-------~~~~-~~~~~~~la~~t~g~sg~di~~~~~~a 694 (802)
. ...+++++++ |+. .+.|++++.+++..|++..+.. ..+. ++.-+..|++... -+.+++.++++.|
T Consensus 146 enp~~~l~~aL~S--R~~-v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~-GD~R~lln~Le~a 221 (725)
T PRK13341 146 ENPYFEVNKALVS--RSR-LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVAN-GDARSLLNALELA 221 (725)
T ss_pred CChHhhhhhHhhc--ccc-ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3 3568899997 764 7899999999999999988862 2222 1222566676553 3456666666665
Q ss_pred H
Q 003691 695 C 695 (802)
Q Consensus 695 ~ 695 (802)
.
T Consensus 222 ~ 222 (725)
T PRK13341 222 V 222 (725)
T ss_pred H
Confidence 5
No 136
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.3e-12 Score=149.96 Aligned_cols=188 Identities=20% Similarity=0.263 Sum_probs=137.9
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe-------------
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 538 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~------------- 538 (802)
...+|++|+|++.+++.|+..+.. -+.+.++||+||+|||||++|+++|+.+.+.
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 356899999999999999887663 1345679999999999999999999987532
Q ss_pred -----------EEEEeCcchhhhccCccHHHHHHHHHHHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHH
Q 003691 539 -----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 603 (802)
Q Consensus 539 -----------~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~ 603 (802)
++.+++.. +.....++.+++.+.. ....|+||||+|.+- ...++.
T Consensus 79 Cr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NA 138 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNA 138 (709)
T ss_pred HHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHH
Confidence 22232221 1223467777766532 334799999998862 345788
Q ss_pred HHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCC
Q 003691 604 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGF 682 (802)
Q Consensus 604 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~ 682 (802)
||+.|+.. ...+.+|.+||.+..+.+.+++ |+. .+.|++++.++....++..+++..+.-+ ..+..|++.+. -
T Consensus 139 LLKtLEEP--p~~v~fILaTtd~~kL~~TIrS--RC~-~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-G 212 (709)
T PRK08691 139 MLKTLEEP--PEHVKFILATTDPHKVPVTVLS--RCL-QFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-G 212 (709)
T ss_pred HHHHHHhC--CCCcEEEEEeCCccccchHHHH--HHh-hhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-C
Confidence 99999853 3456777788888888888875 884 7888999999999999998887655422 23667777665 5
Q ss_pred CHHHHHHHHHHHHHH
Q 003691 683 SGADITEVCQRACKY 697 (802)
Q Consensus 683 sg~di~~~~~~a~~~ 697 (802)
+.+++.+++..+...
T Consensus 213 slRdAlnLLDqaia~ 227 (709)
T PRK08691 213 SMRDALSLLDQAIAL 227 (709)
T ss_pred CHHHHHHHHHHHHHh
Confidence 678888888776654
No 137
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.46 E-value=8.7e-13 Score=148.15 Aligned_cols=168 Identities=13% Similarity=0.221 Sum_probs=111.8
Q ss_pred ceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCC
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 588 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~ 588 (802)
.+++||||+|+|||+|++++++.+ +..++++++.++...+.......-...|..... ...+++||||+.+.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k--- 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGK--- 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCC---
Confidence 569999999999999999999986 577888888777654432221111223544433 4579999999998532
Q ss_pred CCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCC---CCCccccCCCCcc--eEEEecCCCHHHHHHHHHHHhcc
Q 003691 589 STGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD---IIDPALLRPGRLD--QLIYIPLPDEASRLQIFKACLRK 663 (802)
Q Consensus 589 ~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allr~gRf~--~~i~~~~p~~~~r~~Il~~~l~~ 663 (802)
......|+..++.+...++.+|+++++.|. .+++.+.+ ||. ..+.+++|+.++|.+|++..++.
T Consensus 218 ---------~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 218 ---------GATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred ---------hhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 112334444444333334556666666564 46788887 885 78899999999999999998876
Q ss_pred CCCCCccC-HHHHHHHccCCCHHHHHHHHHHHH
Q 003691 664 SPISPDVD-LSALARYTHGFSGADITEVCQRAC 695 (802)
Q Consensus 664 ~~~~~~~~-~~~la~~t~g~sg~di~~~~~~a~ 695 (802)
..+.-+.+ ++.|+.... -+.+++.+.+...+
T Consensus 287 ~~~~l~~evl~~la~~~~-~dir~L~g~l~~l~ 318 (445)
T PRK12422 287 LSIRIEETALDFLIEALS-SNVKSLLHALTLLA 318 (445)
T ss_pred cCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence 65432222 455666444 35677777666664
No 138
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.3e-12 Score=155.65 Aligned_cols=185 Identities=19% Similarity=0.227 Sum_probs=131.6
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC---------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 537 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~--------------- 537 (802)
..+|++|+|++.+++.|+..+.. -+.++.+||+||+|||||++|+++|+.+.+
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 46899999999999999887653 134456899999999999999999999853
Q ss_pred -----------eEEEEeCcchhhhccCccHHHHHHHH----HHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHH
Q 003691 538 -----------NFISVKGPELLTMWFGESEANVREIF----DKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLN 602 (802)
Q Consensus 538 -----------~~i~v~~~~l~~~~vg~se~~i~~lf----~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~ 602 (802)
.++.+++... -.-..|+++- .........|+||||+|.|- ....|
T Consensus 79 ~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------------~~a~N 138 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT--------------PQGFN 138 (824)
T ss_pred HHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC--------------HHHHH
Confidence 1333333221 0123344433 23334556899999999983 34678
Q ss_pred HHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHccC
Q 003691 603 QLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHG 681 (802)
Q Consensus 603 ~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la~~t~g 681 (802)
.||+.|+.. ...+++|++|+.++.|-+.+++ |+. ++.|.+++.++..++++..+++..+.-+. .+..|++...|
T Consensus 139 aLLK~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 139 ALLKIVEEP--PEHLKFIFATTEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899999964 4467777778888888888887 885 88999999999999999888766554222 24566665554
Q ss_pred CCHHHHHHHHHHHH
Q 003691 682 FSGADITEVCQRAC 695 (802)
Q Consensus 682 ~sg~di~~~~~~a~ 695 (802)
+-+++.+++....
T Consensus 214 -dlR~Al~eLEKLi 226 (824)
T PRK07764 214 -SVRDSLSVLDQLL 226 (824)
T ss_pred -CHHHHHHHHHHHH
Confidence 6666666666654
No 139
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.2e-12 Score=148.94 Aligned_cols=186 Identities=22% Similarity=0.340 Sum_probs=133.4
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC--------------
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 537 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~-------------- 537 (802)
.+.+|+++.|++.+++.|...+... ..+..+||+|||||||||+|+++|..+..
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 3568999999999999998876531 33455799999999999999999998742
Q ss_pred ---------eEEEEeCcchhhhccCccHHHHHHHHHHHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHH
Q 003691 538 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 604 (802)
Q Consensus 538 ---------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 604 (802)
.++.+++.+ ..+-..++.+.+.+.. ..+.++||||+|.+. ...++.|
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~naL 136 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFNAL 136 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHHHH
Confidence 144444431 1123445665444432 345799999998762 3467888
Q ss_pred HHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCCC
Q 003691 605 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFS 683 (802)
Q Consensus 605 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~s 683 (802)
|..|+.. ...+++|.+||.++.+.+.+.+ |+. .+.|++|+.++....++..+++.++.-+ ..+..+++.+.| +
T Consensus 137 Lk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-d 210 (504)
T PRK14963 137 LKTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-A 210 (504)
T ss_pred HHHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9998853 3466777788888999999987 886 8999999999999999998876655422 235677776653 4
Q ss_pred HHHHHHHHHHHH
Q 003691 684 GADITEVCQRAC 695 (802)
Q Consensus 684 g~di~~~~~~a~ 695 (802)
.+++.++++.+.
T Consensus 211 lR~aln~Lekl~ 222 (504)
T PRK14963 211 MRDAESLLERLL 222 (504)
T ss_pred HHHHHHHHHHHH
Confidence 556666666554
No 140
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.7e-12 Score=150.00 Aligned_cols=187 Identities=24% Similarity=0.350 Sum_probs=138.6
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC---------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 537 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~--------------- 537 (802)
+.+|+++.|++.+.+.|+..+.. -+.++.+||+||+|||||++|+.+|..+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 46899999999999999887653 134566899999999999999999998642
Q ss_pred ---------eEEEEeCcchhhhccCccHHHHHHHHHHHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHH
Q 003691 538 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 604 (802)
Q Consensus 538 ---------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 604 (802)
+++.+++.. +..-..++.+...+.. ....|++|||+|.+. ...++.|
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a~naL 139 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGAFNAL 139 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHH
Confidence 344444421 1334567777776553 335799999999873 3357889
Q ss_pred HHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCCC
Q 003691 605 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFS 683 (802)
Q Consensus 605 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~s 683 (802)
|..|+.. ...+++|.+|+.++.|.+.+++ |+. .+.|++|+.++...+++..+++.++.-+ ..+..+++.+.| +
T Consensus 140 LKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~ 213 (559)
T PRK05563 140 LKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-G 213 (559)
T ss_pred HHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999853 4466777777888999999887 886 7889999999999999988876655432 336677776665 6
Q ss_pred HHHHHHHHHHHHHH
Q 003691 684 GADITEVCQRACKY 697 (802)
Q Consensus 684 g~di~~~~~~a~~~ 697 (802)
.++..+++..+...
T Consensus 214 ~R~al~~Ldq~~~~ 227 (559)
T PRK05563 214 MRDALSILDQAISF 227 (559)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777766544
No 141
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.45 E-value=1.1e-12 Score=150.68 Aligned_cols=168 Identities=21% Similarity=0.308 Sum_probs=112.2
Q ss_pred eeeeecCCCCchhHHHHHHHHHhC----------CeEEEEeCcchhhhc----------------cC-ccHHHHHHHHHH
Q 003691 513 GVLFYGPPGCGKTLLAKAIANECQ----------ANFISVKGPELLTMW----------------FG-ESEANVREIFDK 565 (802)
Q Consensus 513 gill~GppGtGKT~lakala~~~~----------~~~i~v~~~~l~~~~----------------vg-~se~~i~~lf~~ 565 (802)
.++++|+||||||++++.+..++. ..+++|+|..+...+ .| .+...+..+|..
T Consensus 783 vLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~ 862 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQ 862 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhh
Confidence 357999999999999999987762 557899985543221 01 123456667765
Q ss_pred Hhh--CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCC---CCCCCccccCCCCcc
Q 003691 566 ARQ--SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR---PDIIDPALLRPGRLD 640 (802)
Q Consensus 566 a~~--~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~---~~~ld~allr~gRf~ 640 (802)
... ....||+|||||.|... ...++-.|+.... ....+++|||++|. ++.|+|.+.+ ||.
T Consensus 863 L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg 927 (1164)
T PTZ00112 863 NKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLA 927 (1164)
T ss_pred hhcccccceEEEeehHhhhCcc-----------HHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccc
Confidence 422 33579999999999642 2345555555433 23457999999986 5567888877 775
Q ss_pred e-EEEecCCCHHHHHHHHHHHhccCC-CCCccCHHHHHHHccCCCHHHHH---HHHHHHHH
Q 003691 641 Q-LIYIPLPDEASRLQIFKACLRKSP-ISPDVDLSALARYTHGFSGADIT---EVCQRACK 696 (802)
Q Consensus 641 ~-~i~~~~p~~~~r~~Il~~~l~~~~-~~~~~~~~~la~~t~g~sg~di~---~~~~~a~~ 696 (802)
. .|.|+||+.+++.+||+..+.... +-++.-++.+|+.....+ +|++ .+|+.|+.
T Consensus 928 ~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~S-GDARKALDILRrAgE 987 (1164)
T PTZ00112 928 FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVS-GDIRKALQICRKAFE 987 (1164)
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcC-CHHHHHHHHHHHHHh
Confidence 3 488899999999999999887642 112223667776554333 3444 45566654
No 142
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.45 E-value=9e-13 Score=148.44 Aligned_cols=173 Identities=18% Similarity=0.293 Sum_probs=118.3
Q ss_pred ceeeeecCCCCchhHHHHHHHHHh-----CCeEEEEeCcchhhhccCccH-HHHHHHHHHHhhCCCeEEEEcccchhhhc
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESE-ANVREIFDKARQSAPCVLFFDELDSIATQ 585 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~-----~~~~i~v~~~~l~~~~vg~se-~~i~~lf~~a~~~~p~il~iDEid~l~~~ 585 (802)
.+++||||+|||||+|++++++++ +..++++++.++...+..... ..+.. |.......+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 459999999999999999999986 346788888887765532211 12222 33333335689999999998542
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCC---CCccccCCCCcc--eEEEecCCCHHHHHHHHHHH
Q 003691 586 RGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEASRLQIFKAC 660 (802)
Q Consensus 586 r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~Il~~~ 660 (802)
......|+..++.+...++.+||++.+.|+. +++.+.+ ||. .++.+.+||.+.|.+|++..
T Consensus 210 ------------~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 210 ------------TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred ------------HHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHH
Confidence 1123345555555444455677766677765 4567776 774 68899999999999999998
Q ss_pred hccC--CCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q 003691 661 LRKS--PISPDVDLSALARYTHGFSGADITEVCQRACKYAIRE 701 (802)
Q Consensus 661 l~~~--~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~ 701 (802)
++.. .+++++ +..||+... -+.++|..++.+....+...
T Consensus 276 ~~~~~~~l~~ev-~~~Ia~~~~-~~~R~L~g~l~~l~~~~~~~ 316 (440)
T PRK14088 276 LEIEHGELPEEV-LNFVAENVD-DNLRRLRGAIIKLLVYKETT 316 (440)
T ss_pred HHhcCCCCCHHH-HHHHHhccc-cCHHHHHHHHHHHHHHHHHh
Confidence 8643 444433 677777655 36788888888776666543
No 143
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.3e-12 Score=148.09 Aligned_cols=187 Identities=20% Similarity=0.262 Sum_probs=133.1
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC---------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 537 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~--------------- 537 (802)
..+|++|.|++.+++.|+..+.. -+.++.+||+||+|||||++|+++|+.+.+
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 46899999999999999887653 134556899999999999999999988753
Q ss_pred -----------eEEEEeCcchhhhccCccHHHHHHHHHHH----hhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHH
Q 003691 538 -----------NFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLN 602 (802)
Q Consensus 538 -----------~~i~v~~~~l~~~~vg~se~~i~~lf~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~ 602 (802)
+++.++++.. ..-..++++-+.+ ......|+||||+|.+- ....+
T Consensus 77 ~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------------~~A~N 136 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------------TAGFN 136 (584)
T ss_pred HHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------------HHHHH
Confidence 2333333221 0123344443333 23445799999999973 34678
Q ss_pred HHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccC
Q 003691 603 QLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHG 681 (802)
Q Consensus 603 ~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g 681 (802)
.||..|+. ....+++|.+|+.++.|.+.+++ |+ ..+.|.+++.++..+.++..+++.++.-+ ..+..+++.+.
T Consensus 137 ALLK~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~- 210 (584)
T PRK14952 137 ALLKIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG- 210 (584)
T ss_pred HHHHHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-
Confidence 89999995 44577888888888899999987 86 48999999999999999888876654322 23455655444
Q ss_pred CCHHHHHHHHHHHHHH
Q 003691 682 FSGADITEVCQRACKY 697 (802)
Q Consensus 682 ~sg~di~~~~~~a~~~ 697 (802)
-+.+++.+++..+...
T Consensus 211 GdlR~aln~Ldql~~~ 226 (584)
T PRK14952 211 GSPRDTLSVLDQLLAG 226 (584)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 5677777777776544
No 144
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.8e-12 Score=147.82 Aligned_cols=187 Identities=18% Similarity=0.311 Sum_probs=134.2
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC---------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 537 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~--------------- 537 (802)
..+|+++.|++.+.+.|...+... +.+..+||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 468999999999999998876531 34456899999999999999999998753
Q ss_pred --------------eEEEEeCcchhhhccCccHHHHHHHHHHHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHH
Q 003691 538 --------------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADR 599 (802)
Q Consensus 538 --------------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~ 599 (802)
.++.+++.. ...-..++++.+.+.. ....|++|||+|.+- ..
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------------~~ 139 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------------NT 139 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------------HH
Confidence 123333221 1123456777666543 234799999999973 33
Q ss_pred HHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHH
Q 003691 600 VLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARY 678 (802)
Q Consensus 600 vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~ 678 (802)
.+|.||+.|+. ....+.+|.+|+.++.+.+.+++ |+ ..+.|.+++.++..+.++..+.+..+.-+ ..+..|++.
T Consensus 140 a~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~ 214 (618)
T PRK14951 140 AFNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARA 214 (618)
T ss_pred HHHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 57889999885 34566667777778888888887 88 58999999999999999988876555432 236777776
Q ss_pred ccCCCHHHHHHHHHHHHHH
Q 003691 679 THGFSGADITEVCQRACKY 697 (802)
Q Consensus 679 t~g~sg~di~~~~~~a~~~ 697 (802)
+.| +.+++.+++..+...
T Consensus 215 s~G-slR~al~lLdq~ia~ 232 (618)
T PRK14951 215 ARG-SMRDALSLTDQAIAF 232 (618)
T ss_pred cCC-CHHHHHHHHHHHHHh
Confidence 664 677777777655543
No 145
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=1.4e-12 Score=148.35 Aligned_cols=173 Identities=14% Similarity=0.269 Sum_probs=119.0
Q ss_pred eeeeecCCCCchhHHHHHHHHHh-----CCeEEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccC
Q 003691 513 GVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 587 (802)
Q Consensus 513 gill~GppGtGKT~lakala~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~ 587 (802)
.++|||++|||||+|++++++++ +..++++++.++.+.++.........-|.+-.. .+++|+||||+.+..+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke- 393 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE- 393 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH-
Confidence 49999999999999999999986 457789999988877654333322334544333 35799999999986431
Q ss_pred CCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCC---CCCccccCCCCc--ceEEEecCCCHHHHHHHHHHHhc
Q 003691 588 SSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD---IIDPALLRPGRL--DQLIYIPLPDEASRLQIFKACLR 662 (802)
Q Consensus 588 ~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allr~gRf--~~~i~~~~p~~~~r~~Il~~~l~ 662 (802)
.....|+..++.+...++.+||++...|. .+++.|.+ || ..++.+.+||.+.|.+||+..+.
T Consensus 394 -----------~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 -----------STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred -----------HHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 12234455555444444445554444443 46788887 77 56779999999999999999887
Q ss_pred cCCCCCccC-HHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q 003691 663 KSPISPDVD-LSALARYTHGFSGADITEVCQRACKYAIRE 701 (802)
Q Consensus 663 ~~~~~~~~~-~~~la~~t~g~sg~di~~~~~~a~~~a~~~ 701 (802)
...+.-+.+ ++.|+.... -+-++|..++.+....+...
T Consensus 461 ~r~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~~~ 499 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRIS-RNIRELEGALIRVTAFASLN 499 (617)
T ss_pred hcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHhh
Confidence 655442222 567776554 36788888888876666544
No 146
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.44 E-value=1.9e-12 Score=133.85 Aligned_cols=208 Identities=21% Similarity=0.356 Sum_probs=136.1
Q ss_pred ceeeeecCCCCchhHHHHHHHHHhCCe---EEEEeCcchhhhccCccHHHHHHHHHHHhh-----CCCeEEEEcccchhh
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTMWFGESEANVREIFDKARQ-----SAPCVLFFDELDSIA 583 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~~~~---~i~v~~~~l~~~~vg~se~~i~~lf~~a~~-----~~p~il~iDEid~l~ 583 (802)
.+++|+||||||||+||+.++.....+ |+.++... ...+.+|.+|+.+.. ....|||+|||+++.
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 359999999999999999999998766 77776543 345788999988865 235799999999985
Q ss_pred hccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEec--CCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHh
Q 003691 584 TQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT--NRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL 661 (802)
Q Consensus 584 ~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aT--n~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l 661 (802)
... ...||-..+ .+.+++|+|| |....|..||++ |+- ++.+.....+....||.+.+
T Consensus 236 ksQ--------------QD~fLP~VE----~G~I~lIGATTENPSFqln~aLlS--RC~-VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 236 KSQ--------------QDTFLPHVE----NGDITLIGATTENPSFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhh--------------hhcccceec----cCceEEEecccCCCccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHHH
Confidence 321 233444433 5678888888 566779999998 885 67777888888888888744
Q ss_pred c------cC--CCCC------ccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcccccccccc
Q 003691 662 R------KS--PISP------DVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDD 727 (802)
Q Consensus 662 ~------~~--~~~~------~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (802)
. +. +++. +--++.|+..++| |-+..++...+. +...... .. ...
T Consensus 295 a~l~dser~~~~l~n~s~~ve~siidyla~lsdG----DaR~aLN~Lems-~~m~~tr----~g-------------~~~ 352 (554)
T KOG2028|consen 295 ASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG----DARAALNALEMS-LSMFCTR----SG-------------QSS 352 (554)
T ss_pred HhhccccccCCCCCCcchhhhHHHHHHHHHhcCc----hHHHHHHHHHHH-HHHHHhh----cC-------------Ccc
Confidence 2 11 2221 1124566666665 433322221111 1111000 00 012
Q ss_pred cccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcccCCC
Q 003691 728 VDEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFG 769 (802)
Q Consensus 728 ~~~i~~~~f~~al~~~~~s~~~~~~~~y~~~~~~~~~~~~~~ 769 (802)
...++.+|+.++|+.-.---....-+.|.-+..-+++.|+--
T Consensus 353 ~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D 394 (554)
T KOG2028|consen 353 RVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSD 394 (554)
T ss_pred cceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCc
Confidence 347999999999877554344556678888888888887653
No 147
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.5e-12 Score=149.02 Aligned_cols=184 Identities=18% Similarity=0.267 Sum_probs=128.2
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe-------------
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 538 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~------------- 538 (802)
...+|++|.|++.+++.|...+... +....+||+||+|||||++|+++|+.+...
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 3568999999999999998876531 234579999999999999999999998642
Q ss_pred -----------EEEEeCcchhhhccCccHHHHHHHHHH----HhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHH
Q 003691 539 -----------FISVKGPELLTMWFGESEANVREIFDK----ARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 603 (802)
Q Consensus 539 -----------~i~v~~~~l~~~~vg~se~~i~~lf~~----a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~ 603 (802)
++.+++..- ..-..++.+.+. .......|+||||+|.+- ...++.
T Consensus 79 C~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------------~~a~na 138 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------------REAFNA 138 (624)
T ss_pred HHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------------HHHHHH
Confidence 344443211 011233333222 223445799999999973 345788
Q ss_pred HHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCC
Q 003691 604 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGF 682 (802)
Q Consensus 604 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~ 682 (802)
||..|+.. ...+++|++||.++.|.+.+++ |+. .+.|++++.++...+++..+.+..+. ++..+..+++.+.|
T Consensus 139 LLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G- 212 (624)
T PRK14959 139 LLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG- 212 (624)
T ss_pred HHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 99998853 4567888888888888888887 885 78999999999999998887665542 22235677776653
Q ss_pred CHHHHHHHHHH
Q 003691 683 SGADITEVCQR 693 (802)
Q Consensus 683 sg~di~~~~~~ 693 (802)
+.+++.+++..
T Consensus 213 dlR~Al~lLeq 223 (624)
T PRK14959 213 SVRDSMSLLGQ 223 (624)
T ss_pred CHHHHHHHHHH
Confidence 34444455544
No 148
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.44 E-value=2e-12 Score=142.04 Aligned_cols=190 Identities=22% Similarity=0.340 Sum_probs=123.0
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhC-----CeEEEEeCcch
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 547 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~-----~~~i~v~~~~l 547 (802)
+.+|+++.|.+.+++.|...+..+ ...+++|+||||||||++|+++++++. .+++.+++.++
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 456889999999999888776521 123699999999999999999999874 34678887765
Q ss_pred hhhc-------------cCc-------cHHHHHHHHHHHhh-----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHH
Q 003691 548 LTMW-------------FGE-------SEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLN 602 (802)
Q Consensus 548 ~~~~-------------vg~-------se~~i~~lf~~a~~-----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~ 602 (802)
...+ .+. ....++.+.+.... ..+.++|+||+|.+.. ...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------------~~~~ 143 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------------DAQQ 143 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------------HHHH
Confidence 4221 111 01223333333222 2346999999998732 2345
Q ss_pred HHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccC
Q 003691 603 QLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHG 681 (802)
Q Consensus 603 ~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g 681 (802)
.|+..|+.... ...+|.+|+.+..+.+.+.+ |+ ..+.|++|+.++...+++..+++.++. ++..+..|++.+
T Consensus 144 ~L~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~-- 216 (337)
T PRK12402 144 ALRRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA-- 216 (337)
T ss_pred HHHHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--
Confidence 56666665433 23344455556667777776 76 478999999999999999988766544 223456666655
Q ss_pred CCHHHHHHHHHHHHHHH
Q 003691 682 FSGADITEVCQRACKYA 698 (802)
Q Consensus 682 ~sg~di~~~~~~a~~~a 698 (802)
+++++.++......+
T Consensus 217 --~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 217 --GGDLRKAILTLQTAA 231 (337)
T ss_pred --CCCHHHHHHHHHHHH
Confidence 345666555544433
No 149
>PLN03025 replication factor C subunit; Provisional
Probab=99.43 E-value=1.9e-12 Score=140.60 Aligned_cols=181 Identities=18% Similarity=0.210 Sum_probs=122.2
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhC-----CeEEEEeCcch
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 547 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~-----~~~i~v~~~~l 547 (802)
+.+++++.|.+++.+.|+..+.. ....+++|+||||||||++|+++|+++. ..++.++.++.
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 45788999999998888766442 1123599999999999999999999972 23666776654
Q ss_pred hhhccCccHHHHHHHHH---HHh----hCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEE
Q 003691 548 LTMWFGESEANVREIFD---KAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFII 620 (802)
Q Consensus 548 ~~~~vg~se~~i~~lf~---~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi 620 (802)
.+ ...++...+ ... ...+.+++|||+|.+.. ...+.|+..|+... ....+|
T Consensus 76 ~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~--------------~aq~aL~~~lE~~~--~~t~~i 133 (319)
T PLN03025 76 RG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS--------------GAQQALRRTMEIYS--NTTRFA 133 (319)
T ss_pred cc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH--------------HHHHHHHHHHhccc--CCceEE
Confidence 22 112332222 111 12357999999999842 23466777776543 234466
Q ss_pred EecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHH
Q 003691 621 GATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRAC 695 (802)
Q Consensus 621 ~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~sg~di~~~~~~a~ 695 (802)
.+||.++.+.+++.+ |+. .+.|++|+.++....++..+++.++. ++..+..+++... +|++.+++...
T Consensus 134 l~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~----gDlR~aln~Lq 202 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTAD----GDMRQALNNLQ 202 (319)
T ss_pred EEeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHH
Confidence 678888888889887 874 89999999999999999888665443 1223566666544 46665555443
No 150
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=2.7e-12 Score=146.16 Aligned_cols=187 Identities=22% Similarity=0.272 Sum_probs=131.3
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC---------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 537 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~--------------- 537 (802)
+.+|+++.|++.+++.|...+... +.+..+||+||+|+|||++|+++|..+..
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 468999999999999888776531 33456899999999999999999998753
Q ss_pred ---------eEEEEeCcchhhhccCccHHHHHHHHHHHh----hCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHH
Q 003691 538 ---------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 604 (802)
Q Consensus 538 ---------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 604 (802)
.++.+++..- . .-..++.+.+.+. .....|+||||+|.+- ....+.|
T Consensus 80 ~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------------~~a~naL 139 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------------KQSFNAL 139 (546)
T ss_pred HHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------HHHHHHH
Confidence 2333433211 1 1234555555443 2345799999999873 3467889
Q ss_pred HHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCCC
Q 003691 605 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFS 683 (802)
Q Consensus 605 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~s 683 (802)
|..|+.. .+.+++|++|+.+..+.+.+++ |+ ..++|.+++.++....++..+++.++.-+ ..+..+++.+. -+
T Consensus 140 LK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~-Gd 213 (546)
T PRK14957 140 LKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK-GS 213 (546)
T ss_pred HHHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CC
Confidence 9999953 4456666666667778777776 88 59999999999998888888776554422 23566676664 46
Q ss_pred HHHHHHHHHHHHHH
Q 003691 684 GADITEVCQRACKY 697 (802)
Q Consensus 684 g~di~~~~~~a~~~ 697 (802)
.+++.+++..+...
T Consensus 214 lR~alnlLek~i~~ 227 (546)
T PRK14957 214 LRDALSLLDQAISF 227 (546)
T ss_pred HHHHHHHHHHHHHh
Confidence 67777777766544
No 151
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.43 E-value=5.3e-12 Score=139.68 Aligned_cols=188 Identities=23% Similarity=0.347 Sum_probs=135.5
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC--------------
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 537 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~-------------- 537 (802)
.+.+|+++.|++.+++.|.+.+.. -..+..+||+||||+|||++|+++|..+..
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 457899999999999999877653 123456899999999999999999988742
Q ss_pred ----------eEEEEeCcchhhhccCccHHHHHHHHHHHhhC----CCeEEEEcccchhhhccCCCCCCCCCchHHHHHH
Q 003691 538 ----------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 603 (802)
Q Consensus 538 ----------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~ 603 (802)
+++.+++.+ ......++.+++.+... ...++++||+|.+. ....+.
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------------~~~~~~ 136 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------------KSAFNA 136 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------------HHHHHH
Confidence 234444431 12334577788776543 23699999998873 235678
Q ss_pred HHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCC
Q 003691 604 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGF 682 (802)
Q Consensus 604 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~ 682 (802)
||..++.. ...+++|.+||.++.+.+++.+ |+. .+.|++|+.++..++++..+++.++.-+ ..+..+++.+.|
T Consensus 137 Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g- 210 (355)
T TIGR02397 137 LLKTLEEP--PEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG- 210 (355)
T ss_pred HHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888753 3466777778888888888887 885 7899999999999999998876654322 235566776654
Q ss_pred CHHHHHHHHHHHHHH
Q 003691 683 SGADITEVCQRACKY 697 (802)
Q Consensus 683 sg~di~~~~~~a~~~ 697 (802)
+.+.+.+.++.+...
T Consensus 211 ~~~~a~~~lekl~~~ 225 (355)
T TIGR02397 211 SLRDALSLLDQLISF 225 (355)
T ss_pred ChHHHHHHHHHHHhh
Confidence 666666666666554
No 152
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.4e-12 Score=145.39 Aligned_cols=163 Identities=25% Similarity=0.376 Sum_probs=126.3
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEec------hhhhh--
Q 003691 205 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLING------PEIMS-- 276 (802)
Q Consensus 205 ~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~------~~l~~-- 276 (802)
|=-|+++.+++|.|++.....+ |-..++-++|+||||+|||++++.||..++..|+.++- .++-+
T Consensus 412 DHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 4579999999999998753222 23457789999999999999999999999999977653 23332
Q ss_pred -hccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhccc-------------CCCcEE
Q 003691 277 -KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------------SRAHVI 342 (802)
Q Consensus 277 -~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------------~~~~vi 342 (802)
.|+|....++-+.+.......| +++|||+|.+......++ .++|+++||--+ .-.+|+
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDP-------asALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDP-------ASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCCh-------HHHHHHhcChhhccchhhhccccccchhheE
Confidence 5778888888888888877777 888999999984322222 245666665322 225899
Q ss_pred EEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHh
Q 003691 343 VMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT 385 (802)
Q Consensus 343 vI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~ 385 (802)
+|+|.|..+.|++.|+. |+ ..|+++-+..++...|.+.|+
T Consensus 557 FicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 99999999999999987 77 568899999999999998765
No 153
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=4.6e-12 Score=144.23 Aligned_cols=187 Identities=20% Similarity=0.282 Sum_probs=133.7
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC---------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 537 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~--------------- 537 (802)
+.+|+++.|++.+++.|...+.. -..++++||+||+|+|||++|+++|..+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 46789999999999988876642 134567999999999999999999998742
Q ss_pred ---------eEEEEeCcchhhhccCccHHHHHHHHHHHhhC----CCeEEEEcccchhhhccCCCCCCCCCchHHHHHHH
Q 003691 538 ---------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 604 (802)
Q Consensus 538 ---------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 604 (802)
.++.+++... -.-..++.+.+.+... ...|++|||+|.+- ....+.|
T Consensus 80 r~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt--------------~~A~NaL 139 (605)
T PRK05896 80 ESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS--------------TSAWNAL 139 (605)
T ss_pred HHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC--------------HHHHHHH
Confidence 2333433221 1233466666555432 34699999999872 2346889
Q ss_pred HHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCC
Q 003691 605 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFS 683 (802)
Q Consensus 605 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~s 683 (802)
|..|+.. ...+++|.+|+.++.|.+.+++ |+. .+.|++|+.++....++..+.+.+.. ++..+..+++.+.| +
T Consensus 140 LKtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-d 213 (605)
T PRK05896 140 LKTLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-S 213 (605)
T ss_pred HHHHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 9999853 4467777888888999999987 886 89999999999999999888665432 22236677776654 5
Q ss_pred HHHHHHHHHHHHHH
Q 003691 684 GADITEVCQRACKY 697 (802)
Q Consensus 684 g~di~~~~~~a~~~ 697 (802)
.+++.+++..+...
T Consensus 214 lR~AlnlLekL~~y 227 (605)
T PRK05896 214 LRDGLSILDQLSTF 227 (605)
T ss_pred HHHHHHHHHHHHhh
Confidence 66666666664443
No 154
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=3.6e-12 Score=146.34 Aligned_cols=187 Identities=24% Similarity=0.312 Sum_probs=134.0
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe--------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 538 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~-------------- 538 (802)
+.+|+++.|++.+++.|...+... +.+..+||+||+|+|||++|+++|..+.+.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 468999999999999988776531 334568999999999999999999998542
Q ss_pred ----------EEEEeCcchhhhccCccHHHHHHHHHHHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHH
Q 003691 539 ----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 604 (802)
Q Consensus 539 ----------~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 604 (802)
++.++++. .-....++.+.+.+.. ....|+||||+|.+- ....|.|
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------------~~a~naL 139 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------------KSAFNAM 139 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------HHHHHHH
Confidence 22332221 1123457777776643 234699999999873 3457889
Q ss_pred HHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCCC
Q 003691 605 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFS 683 (802)
Q Consensus 605 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~s 683 (802)
|+.|+.. .+.+++|.+|+.++.+.+.+++ |+ ..+.|.+++.++..+.++..+.+..+..+ ..+..+++.+. -+
T Consensus 140 LK~LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~-Gs 213 (527)
T PRK14969 140 LKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAA-GS 213 (527)
T ss_pred HHHHhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CC
Confidence 9999863 4566777777778888777776 88 48999999999998888887765544422 23566777655 46
Q ss_pred HHHHHHHHHHHHHH
Q 003691 684 GADITEVCQRACKY 697 (802)
Q Consensus 684 g~di~~~~~~a~~~ 697 (802)
.+++.+++..|...
T Consensus 214 lr~al~lldqai~~ 227 (527)
T PRK14969 214 MRDALSLLDQAIAY 227 (527)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777787776544
No 155
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=9.6e-12 Score=144.37 Aligned_cols=187 Identities=24% Similarity=0.337 Sum_probs=135.5
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeE------------
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF------------ 539 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~------------ 539 (802)
.+.+|++|.|++.+++.|+..+... +.++.+||+||+|+|||++|+++|..+.+.-
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 4568999999999999998877531 3456689999999999999999998875421
Q ss_pred ---------EEEeCcchhhhccCccHHHHHHHHHHHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHH
Q 003691 540 ---------ISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLT 606 (802)
Q Consensus 540 ---------i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~ 606 (802)
+.+++.. ..+...++.+.+.+.. ....|++|||+|.+- ...++.||.
T Consensus 81 ~~~~~~~Dvieidaas------n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------------~~A~NALLK 140 (725)
T PRK07133 81 ENVNNSLDIIEMDAAS------NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------------KSAFNALLK 140 (725)
T ss_pred HhhcCCCcEEEEeccc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------------HHHHHHHHH
Confidence 1111100 0124457777776654 345799999999873 235788999
Q ss_pred HhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHccCCCHH
Q 003691 607 EMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFSGA 685 (802)
Q Consensus 607 ~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la~~t~g~sg~ 685 (802)
.|+. +...+++|.+|+.++.|.+.+++ |+. ++.|.+|+.++...+++..+.+.++.-+. .+..+|+.+. -+.+
T Consensus 141 tLEE--PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~-GslR 214 (725)
T PRK07133 141 TLEE--PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSS-GSLR 214 (725)
T ss_pred Hhhc--CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHH
Confidence 9995 34567778888889999999887 886 89999999999999998887765544322 2566777665 3556
Q ss_pred HHHHHHHHHHH
Q 003691 686 DITEVCQRACK 696 (802)
Q Consensus 686 di~~~~~~a~~ 696 (802)
++..++..+..
T Consensus 215 ~AlslLekl~~ 225 (725)
T PRK07133 215 DALSIAEQVSI 225 (725)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 156
>PRK06893 DNA replication initiation factor; Validated
Probab=99.40 E-value=3.2e-12 Score=131.98 Aligned_cols=159 Identities=13% Similarity=0.190 Sum_probs=101.7
Q ss_pred ceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCC
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 588 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~ 588 (802)
..++||||||||||+|++++|+++ +....++...+.. .....+++..+ ...+|+|||++.+.+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 358999999999999999999986 2333444432211 11123343333 34699999999985421
Q ss_pred CCCCCCCchHHHHHHHHHHhhccCCCC-cEEEEEecCCCCCCC---ccccCCCCcceEEEecCCCHHHHHHHHHHHhccC
Q 003691 589 STGDAGGAADRVLNQLLTEMDGMNAKK-TVFIIGATNRPDIID---PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS 664 (802)
Q Consensus 589 ~~~~~~~~~~~vl~~lL~~ld~~~~~~-~v~vi~aTn~~~~ld---~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~ 664 (802)
... ..|+..++.....+ .++|++++..|..++ |.+.++.+++..+.+++|+.++|.+|++..+...
T Consensus 108 -------~~~---~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~ 177 (229)
T PRK06893 108 -------EWE---LAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR 177 (229)
T ss_pred -------HHH---HHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc
Confidence 112 23444444443333 355666666776654 8888845556889999999999999999877544
Q ss_pred --CCCCccCHHHHHHHccCCCHHHHHHHHHHH
Q 003691 665 --PISPDVDLSALARYTHGFSGADITEVCQRA 694 (802)
Q Consensus 665 --~~~~~~~~~~la~~t~g~sg~di~~~~~~a 694 (802)
.+++++ +..|++...| +.+.+.+++...
T Consensus 178 ~l~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 178 GIELSDEV-ANFLLKRLDR-DMHTLFDALDLL 207 (229)
T ss_pred CCCCCHHH-HHHHHHhccC-CHHHHHHHHHHH
Confidence 444332 6677776553 566666666654
No 157
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.40 E-value=3e-12 Score=139.32 Aligned_cols=156 Identities=21% Similarity=0.263 Sum_probs=109.7
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhcc
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 552 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~v 552 (802)
+.+++++.|.+++++.+...+.. + ..+..++|+||||+|||++|++++...+.+++.+++.+ .. +
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~ 81 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-I 81 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-H
Confidence 46789999999999988877652 1 23445777999999999999999999998999998876 11 1
Q ss_pred CccHHHHHHHHHHHh-hCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCc
Q 003691 553 GESEANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDP 631 (802)
Q Consensus 553 g~se~~i~~lf~~a~-~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 631 (802)
......+........ ...+.++||||+|.+.. ....+.|.+.|+.. ..++.+|++||.++.+++
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------------~~~~~~L~~~le~~--~~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 82 DFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------------ADAQRHLRSFMEAY--SKNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------------HHHHHHHHHHHHhc--CCCceEEEEcCChhhchH
Confidence 111122222211111 13468999999998721 11233444446543 345678889999999999
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHHHh
Q 003691 632 ALLRPGRLDQLIYIPLPDEASRLQIFKACL 661 (802)
Q Consensus 632 allr~gRf~~~i~~~~p~~~~r~~Il~~~l 661 (802)
++.+ ||. .+.|+.|+.+++.++++..+
T Consensus 147 ~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 147 PLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 9998 996 78999999999988876543
No 158
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.39 E-value=6.4e-12 Score=129.74 Aligned_cols=167 Identities=16% Similarity=0.221 Sum_probs=109.2
Q ss_pred CCceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhcc
Q 003691 510 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 586 (802)
Q Consensus 510 ~~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r 586 (802)
.+..++|+||+|||||++|++++..+ +.+++.+++.++.... ..+++.... ..+|+|||++.+...
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~--~~lLvIDdi~~l~~~- 105 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLEQ--ADLVCLDDVEAIAGQ- 105 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhccc--CCEEEEeChhhhcCC-
Confidence 35579999999999999999999887 3678888888775422 233333322 359999999987421
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCC---ccccCCCCc--ceEEEecCCCHHHHHHHHHHHh
Q 003691 587 GSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIID---PALLRPGRL--DQLIYIPLPDEASRLQIFKACL 661 (802)
Q Consensus 587 ~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld---~allr~gRf--~~~i~~~~p~~~~r~~Il~~~l 661 (802)
......|...++.....+..+|++++..+..++ +.+.+ |+ ...+.+|+|+.+++..+++.++
T Consensus 106 -----------~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 106 -----------PEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred -----------hHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHH
Confidence 011233333333322233345555554554432 66676 66 4789999999999999999877
Q ss_pred ccCCCCC-ccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q 003691 662 RKSPISP-DVDLSALARYTHGFSGADITEVCQRACKYAIRE 701 (802)
Q Consensus 662 ~~~~~~~-~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~ 701 (802)
.+..+.- +.-+..|++. -+-+.+++.++++++...+...
T Consensus 173 ~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~~ 212 (226)
T TIGR03420 173 ARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLAA 212 (226)
T ss_pred HHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHh
Confidence 6544332 2225667764 4457889999998877655443
No 159
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.39 E-value=2.8e-11 Score=141.52 Aligned_cols=223 Identities=24% Similarity=0.361 Sum_probs=137.6
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh----------CCeEEEE
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 542 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~----------~~~~i~v 542 (802)
..+|+++.|++...+.+...+.. ..+.+++|+|||||||||+|+++++.. +.+|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 46788999999887776554432 123469999999999999999998776 3468999
Q ss_pred eCcchh-------hhccCccHHHH----HHHHHH----------HhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHH
Q 003691 543 KGPELL-------TMWFGESEANV----REIFDK----------ARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVL 601 (802)
Q Consensus 543 ~~~~l~-------~~~vg~se~~i----~~lf~~----------a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl 601 (802)
++..+. ..++|...... +..+.. .......+||+||++.+- ....
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld--------------~~~Q 282 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD--------------PLLQ 282 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC--------------HHHH
Confidence 987652 11222211110 111110 001223599999998863 2344
Q ss_pred HHHHHHhhccC--------------------------CCCcEEEEE-ecCCCCCCCccccCCCCcceEEEecCCCHHHHH
Q 003691 602 NQLLTEMDGMN--------------------------AKKTVFIIG-ATNRPDIIDPALLRPGRLDQLIYIPLPDEASRL 654 (802)
Q Consensus 602 ~~lL~~ld~~~--------------------------~~~~v~vi~-aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~ 654 (802)
..|+..|+... ....+++|+ ||+.++.+++++.+ ||. .++|++++.+++.
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 55666554311 112355555 45668889999887 997 6789999999999
Q ss_pred HHHHHHhccCCCCC-ccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcccccccccccccccH
Q 003691 655 QIFKACLRKSPISP-DVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKA 733 (802)
Q Consensus 655 ~Il~~~l~~~~~~~-~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 733 (802)
.|++..+.+..+.- +.-+..|++.+ ..|+...+++..+...+..+..... .......|+.
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~~-----------------~~~~~~~I~~ 420 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEAG-----------------KENDKVTITQ 420 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHhc-----------------cCCCCeeECH
Confidence 99999988754321 11234455443 3566555666666554444321000 0011247999
Q ss_pred HHHHHHHhhcC
Q 003691 734 VHFEESMKYAR 744 (802)
Q Consensus 734 ~~f~~al~~~~ 744 (802)
+|+++++..-+
T Consensus 421 edv~~~l~~~r 431 (615)
T TIGR02903 421 DDVYEVIQISR 431 (615)
T ss_pred HHHHHHhCCCc
Confidence 99999987754
No 160
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.9e-12 Score=145.50 Aligned_cols=163 Identities=25% Similarity=0.357 Sum_probs=126.9
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEec------hhhhh--
Q 003691 205 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLING------PEIMS-- 276 (802)
Q Consensus 205 ~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~------~~l~~-- 276 (802)
|=-|+++.+++|.+++...... .-..+.-++|+||||+|||+|++.+|..++..|+.++- +++.+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 4479999999999998752222 11345679999999999999999999999999988764 33433
Q ss_pred -hccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccC-------------CCcEE
Q 003691 277 -KLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-------------RAHVI 342 (802)
Q Consensus 277 -~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-------------~~~vi 342 (802)
.|.|....++-+-+..+....| ++++||||.+..+-...+. ++|++.||--+. -..|+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPa-------SALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPA-------SALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChH-------HHHHhhcCHhhcCchhhccccCccchhheE
Confidence 5788888888888888877777 8889999999876443322 456666653221 25899
Q ss_pred EEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHh
Q 003691 343 VMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT 385 (802)
Q Consensus 343 vI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~ 385 (802)
+|+|.|..+.++..|+. |+ ..|.+.-+++.+.++|.+.|+
T Consensus 469 FiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 99999999999999886 77 568999999999999998774
No 161
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=7e-12 Score=145.70 Aligned_cols=187 Identities=21% Similarity=0.300 Sum_probs=135.7
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC---------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 537 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~--------------- 537 (802)
+.+|++|.|++++++.|...+.. -+.++.+||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 46899999999999999887653 134566899999999999999999999753
Q ss_pred ---------eEEEEeCcchhhhccCccHHHHHHHHHHHhhC----CCeEEEEcccchhhhccCCCCCCCCCchHHHHHHH
Q 003691 538 ---------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 604 (802)
Q Consensus 538 ---------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 604 (802)
+++.+++..- .....++.+.+.+... ...|++|||+|.+- ....+.|
T Consensus 80 ~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------------~~a~naL 139 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------------TNAFNAL 139 (576)
T ss_pred HHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------HHHHHHH
Confidence 1344444321 1234577776665432 34699999999873 3457899
Q ss_pred HHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCC
Q 003691 605 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFS 683 (802)
Q Consensus 605 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g~s 683 (802)
|..|+. +...+++|.+||.++.|.+.+++ |+. .+.|.+++.++....++..+++..+.- +..+..+++.+.| +
T Consensus 140 Lk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~ 213 (576)
T PRK14965 140 LKTLEE--PPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-S 213 (576)
T ss_pred HHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 999995 34577788888888999999987 885 889999999998888888776655442 2335677776664 5
Q ss_pred HHHHHHHHHHHHHH
Q 003691 684 GADITEVCQRACKY 697 (802)
Q Consensus 684 g~di~~~~~~a~~~ 697 (802)
-+++.+++..+..+
T Consensus 214 lr~al~~Ldqliay 227 (576)
T PRK14965 214 MRDSLSTLDQVLAF 227 (576)
T ss_pred HHHHHHHHHHHHHh
Confidence 56666666555443
No 162
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.38 E-value=3.2e-12 Score=130.44 Aligned_cols=183 Identities=20% Similarity=0.265 Sum_probs=126.5
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe------EEEEeCc
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------FISVKGP 545 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~------~i~v~~~ 545 (802)
.+-+++++.|++.+.+.|...+.. ....++|||||||||||+.|+++|.++..+ ....+.+
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 456789999999999999887653 234569999999999999999999998652 3444555
Q ss_pred chhhhccCccHHHHHHHHHHHhh---------C-CCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCC
Q 003691 546 ELLTMWFGESEANVREIFDKARQ---------S-APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKK 615 (802)
Q Consensus 546 ~l~~~~vg~se~~i~~lf~~a~~---------~-~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~ 615 (802)
+-.+.-++. .++ +-|.+... . .+.|++|||.|.+. ....+.|.+.|+.. ..
T Consensus 98 derGisvvr--~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------------sdaq~aLrr~mE~~--s~ 158 (346)
T KOG0989|consen 98 DERGISVVR--EKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------------SDAQAALRRTMEDF--SR 158 (346)
T ss_pred ccccccchh--hhh-cCHHHHhhccccccCCCCCcceEEEEechhhhh--------------HHHHHHHHHHHhcc--cc
Confidence 544332211 111 12222221 1 23799999999984 34568888999974 55
Q ss_pred cEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHccCCCHHHHHHHHHH
Q 003691 616 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGFSGADITEVCQR 693 (802)
Q Consensus 616 ~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la~~t~g~sg~di~~~~~~ 693 (802)
.+.+|..||.++.|...+.+ |+. .+.|++...+.....|+....+-.+.-|. -+..+++. |++|++..+..
T Consensus 159 ~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~----S~GdLR~Ait~ 230 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKI----SDGDLRRAITT 230 (346)
T ss_pred ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH----cCCcHHHHHHH
Confidence 67888899999999999987 997 66777777777777777777665554332 25566664 44577654433
No 163
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=2.2e-11 Score=137.35 Aligned_cols=184 Identities=21% Similarity=0.294 Sum_probs=128.9
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC---------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 537 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~--------------- 537 (802)
+.+|++|.|++.+++.|...+... +.+..+|||||+|+|||++|+++|..+..
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 478999999999999888776531 34566999999999999999999998743
Q ss_pred ----------eEEEEeCcchhhhccCccHHHHHHHHHHH----hhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHH
Q 003691 538 ----------NFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 603 (802)
Q Consensus 538 ----------~~i~v~~~~l~~~~vg~se~~i~~lf~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~ 603 (802)
+++.+++... . .-..++.+-+.. ......|+||||+|.+. ....+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------------~~~~n~ 140 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------------KEAFNS 140 (451)
T ss_pred HHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------------HHHHHH
Confidence 2444444221 1 112343333222 23456899999999873 235688
Q ss_pred HHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCC
Q 003691 604 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGF 682 (802)
Q Consensus 604 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g~ 682 (802)
||..|+.. ...+++|++||.++.|.+++.+ |+. .++|++++.++....++..+++.++.- +..+..|+..+.|
T Consensus 141 LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g- 214 (451)
T PRK06305 141 LLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG- 214 (451)
T ss_pred HHHHhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 99999864 3466777777888899999987 886 799999999999999988877655432 2346677776653
Q ss_pred CHHHHHHHHHHH
Q 003691 683 SGADITEVCQRA 694 (802)
Q Consensus 683 sg~di~~~~~~a 694 (802)
+-+++.+.+..+
T Consensus 215 dlr~a~~~Lekl 226 (451)
T PRK06305 215 SLRDAESLYDYV 226 (451)
T ss_pred CHHHHHHHHHHH
Confidence 444544444443
No 164
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.4e-11 Score=139.76 Aligned_cols=188 Identities=22% Similarity=0.326 Sum_probs=130.2
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC--------------
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 537 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~-------------- 537 (802)
.+.+|+++.|++.+.+.|...+.. -+.++.+|||||+|+|||++|+.+|..+.+
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 346889999999999999887753 133456899999999999999999998753
Q ss_pred ----------eEEEEeCcchhhhccCccHHHHHHHHHHHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHH
Q 003691 538 ----------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 603 (802)
Q Consensus 538 ----------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~ 603 (802)
.++.++++. ...-..++.+.+.+.. ..+.|++|||+|.+. ...++.
T Consensus 79 c~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------------~~a~na 138 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------------KEAFNA 138 (486)
T ss_pred HHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------------HHHHHH
Confidence 122222211 0112345555554432 345799999999873 335678
Q ss_pred HHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCC
Q 003691 604 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGF 682 (802)
Q Consensus 604 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~ 682 (802)
||..|+.. ...+++|.+|+.++.|.+++.+ |+. .+.|++|+.++...+++..++..++.-+ ..+..+++.+.|
T Consensus 139 LLk~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G- 212 (486)
T PRK14953 139 LLKTLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG- 212 (486)
T ss_pred HHHHHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888854 3345555566777888888887 886 7999999999999999998877665432 235667776553
Q ss_pred CHHHHHHHHHHHHHH
Q 003691 683 SGADITEVCQRACKY 697 (802)
Q Consensus 683 sg~di~~~~~~a~~~ 697 (802)
+.+++.+++..+...
T Consensus 213 ~lr~al~~Ldkl~~~ 227 (486)
T PRK14953 213 GMRDAASLLDQASTY 227 (486)
T ss_pred CHHHHHHHHHHHHHh
Confidence 456666666666543
No 165
>PRK04195 replication factor C large subunit; Provisional
Probab=99.37 E-value=1.6e-11 Score=140.83 Aligned_cols=182 Identities=27% Similarity=0.383 Sum_probs=127.4
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 275 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~ 275 (802)
+++.+.+++++.|.+++++.++.++..... -.++.++||+|||||||||+|+++|++++..++.+++++..
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~---------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK---------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 456788999999999999999999864221 12367899999999999999999999999999999886643
Q ss_pred hhccchhHHHHHHHHHHHHh------cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCC
Q 003691 276 SKLAGESESNLRKAFEEAEK------NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR 349 (802)
Q Consensus 276 ~~~~g~~~~~l~~vf~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~ 349 (802)
+ ...++.+...+.. ..+.+|+|||+|.+..+.. ......|+..++. ....+|.++|.
T Consensus 77 ~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~----~~~~iIli~n~ 139 (482)
T PRK04195 77 T------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKK----AKQPIILTAND 139 (482)
T ss_pred c------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHc----CCCCEEEeccC
Confidence 2 1223333333222 2467999999999865321 1234556666652 22344556788
Q ss_pred CCCCCH-HhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCC
Q 003691 350 PNSIDP-ALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 406 (802)
Q Consensus 350 ~~~ld~-al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 406 (802)
+..+.+ .+++ ....+.++.|+..+...+++..+....+. ++..+..++..+.|-
T Consensus 140 ~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GD 195 (482)
T PRK04195 140 PYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGD 195 (482)
T ss_pred ccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 887776 6665 34678999999999999998777554432 334577777776653
No 166
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=2.1e-11 Score=135.40 Aligned_cols=178 Identities=19% Similarity=0.229 Sum_probs=125.1
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 265 (802)
+++.+.+|+++.|++..++.|+.++... ..+..+||+||+||||||+|+++|+.++..
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~ 77 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNE 77 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCC
Confidence 4678889999999999999998887641 124468999999999999999999988652
Q ss_pred --------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEecccccccCCCCCCchhHHHHHHHH
Q 003691 266 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 327 (802)
Q Consensus 266 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 327 (802)
++.+++.. ......++.+.+.+. .....|+||||+|.+.. ...+.
T Consensus 78 C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NA 140 (484)
T PRK14956 78 CTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNA 140 (484)
T ss_pred CcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHH
Confidence 12222210 111234455544433 33456999999998842 34577
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCC
Q 003691 328 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 406 (802)
Q Consensus 328 Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 406 (802)
|+..|+.. ...+++|.+|+.++.+.+++++ |+ ..+.+..++..+-.+.++..+....+. ++..+..++....|-
T Consensus 141 LLKtLEEP--p~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd 215 (484)
T PRK14956 141 LLKTLEEP--PAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS 215 (484)
T ss_pred HHHHhhcC--CCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh
Confidence 78888653 3578888888889999999988 66 457888888877777777666544332 344577788877775
Q ss_pred c
Q 003691 407 V 407 (802)
Q Consensus 407 ~ 407 (802)
.
T Consensus 216 ~ 216 (484)
T PRK14956 216 V 216 (484)
T ss_pred H
Confidence 3
No 167
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.8e-11 Score=140.71 Aligned_cols=187 Identities=16% Similarity=0.228 Sum_probs=129.9
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 265 (802)
+++.+.+|++|.|+++.++.|+.++... ..+..+||+||+||||||++++|++.+++.
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~ 75 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV 75 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc
Confidence 4678889999999999999999887631 224568999999999999999999988642
Q ss_pred --------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHH
Q 003691 266 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 327 (802)
Q Consensus 266 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 327 (802)
++.++..+ ...-..++.+++.+.. ....|+||||+|.|.. ...+.
T Consensus 76 C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NA 138 (830)
T PRK07003 76 CRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNA 138 (830)
T ss_pred cHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHH
Confidence 22222211 1122345666655432 2346999999998842 23567
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCC
Q 003691 328 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 406 (802)
Q Consensus 328 Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 406 (802)
|++.|+... ..+.+|.+||.++.|.+.+++ |+ ..+.|..++.++..+.|+..++...+. ++..+..|+....|-
T Consensus 139 LLKtLEEPP--~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs 213 (830)
T PRK07003 139 MLKTLEEPP--PHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS 213 (830)
T ss_pred HHHHHHhcC--CCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 788887543 367778888889999999887 66 668899999988888888766543332 344567777777775
Q ss_pred chHHHHHHHHH
Q 003691 407 VGSDLAALCTE 417 (802)
Q Consensus 407 ~~~dl~~l~~~ 417 (802)
.. +...++..
T Consensus 214 mR-dALsLLdQ 223 (830)
T PRK07003 214 MR-DALSLTDQ 223 (830)
T ss_pred HH-HHHHHHHH
Confidence 43 33334333
No 168
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=2e-11 Score=137.98 Aligned_cols=177 Identities=18% Similarity=0.248 Sum_probs=122.4
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCC-----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------- 264 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~----------- 264 (802)
+++.+.+|+++.|++..++.|+.++... ..+..+||+|||||||||+|+++|+.++.
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 4678889999999999988888877531 23456999999999999999999998764
Q ss_pred -------------cEEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHH
Q 003691 265 -------------FFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 327 (802)
Q Consensus 265 -------------~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 327 (802)
.++.+++.. ...-..++.+.+.+.. ....++|+||+|.+.. .....
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~ 136 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNA 136 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHH
Confidence 233333321 1112345555554432 2346999999998842 23456
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCcc-ccchhhHHHHhhcCCC
Q 003691 328 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHGY 406 (802)
Q Consensus 328 Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~ 406 (802)
|+..++... ..+++|++|+.+..+++++++ |+ ..+.+..++..+...+++..+....+ .++..+..++..+.|-
T Consensus 137 LLk~LE~p~--~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~Gd 211 (472)
T PRK14962 137 LLKTLEEPP--SHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGG 211 (472)
T ss_pred HHHHHHhCC--CcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Confidence 777776533 356666677777889999987 66 57899999999988888876654332 2334567777766653
No 169
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.36 E-value=2.5e-11 Score=122.40 Aligned_cols=191 Identities=24% Similarity=0.370 Sum_probs=133.0
Q ss_pred ccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcch
Q 003691 471 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL 547 (802)
Q Consensus 471 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l 547 (802)
...+.++++.|++..|+.|.+.....+. | .+..++||+|+.|||||+++|++..+. +..+|.|...++
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 4578999999999999999776543222 2 356679999999999999999999987 456788877766
Q ss_pred hhhccCccHHHHHHHHHHHhhC-CCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC--CCCcEEEEEecC
Q 003691 548 LTMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--AKKTVFIIGATN 624 (802)
Q Consensus 548 ~~~~vg~se~~i~~lf~~a~~~-~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--~~~~v~vi~aTn 624 (802)
. .+..+++..+.. .+-|||+|++..= ..+.-...|-..|||.- ..++|+|.+|+|
T Consensus 92 ~---------~l~~l~~~l~~~~~kFIlf~DDLsFe-------------~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 92 G---------DLPELLDLLRDRPYKFILFCDDLSFE-------------EGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred c---------cHHHHHHHHhcCCCCEEEEecCCCCC-------------CCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 3 234455444422 3459999997541 11223466667788753 357899999999
Q ss_pred CCCCCCcc----------ccC-----------CCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcc-CHH----HHHHH
Q 003691 625 RPDIIDPA----------LLR-----------PGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLS----ALARY 678 (802)
Q Consensus 625 ~~~~ld~a----------llr-----------~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~----~la~~ 678 (802)
|...+... -++ ..||...|.|.+|+.++-++|++.++.+..+.-+. ++. ..|..
T Consensus 150 RRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~ 229 (249)
T PF05673_consen 150 RRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALR 229 (249)
T ss_pred hhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 87654321 122 23999999999999999999999999877766442 222 22333
Q ss_pred ccCCCHHHHHHHHH
Q 003691 679 THGFSGADITEVCQ 692 (802)
Q Consensus 679 t~g~sg~di~~~~~ 692 (802)
..|.||+--.+.+.
T Consensus 230 rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 230 RGGRSGRTARQFID 243 (249)
T ss_pred cCCCCHHHHHHHHH
Confidence 45677775555443
No 170
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.2e-11 Score=140.56 Aligned_cols=187 Identities=16% Similarity=0.232 Sum_probs=128.8
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 265 (802)
.++.+.+|++|.|++..++.|++++..- +.+..+||+||+|+||||+++.||+.+.+.
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~ 75 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITA 75 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCC
Confidence 4677889999999999999999888641 224568999999999999999999998651
Q ss_pred -------------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEecccccccCCCCCCchhHHH
Q 003691 266 -------------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVER 322 (802)
Q Consensus 266 -------------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~ 322 (802)
++.+++.+ ...-..++.+++... .....|+||||+|.|..
T Consensus 76 ~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~----------- 138 (700)
T PRK12323 76 QPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN----------- 138 (700)
T ss_pred CCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------
Confidence 12222110 112344566555543 33457999999998842
Q ss_pred HHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCcccc-chhhHHHHh
Q 003691 323 RIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAE-DVDLERVAK 401 (802)
Q Consensus 323 ~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~-~~~l~~la~ 401 (802)
...+.|++.|+... .++++|.+|+.++.|.+.+++ |+ ..+.|..++.++..+.|+..+....+.. +..+..++.
T Consensus 139 ~AaNALLKTLEEPP--~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~ 213 (700)
T PRK12323 139 HAFNAMLKTLEEPP--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQ 213 (700)
T ss_pred HHHHHHHHhhccCC--CCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 24567888887533 467778888899999999987 65 5678999998888888776654433322 234566777
Q ss_pred hcCCCchHHHHHHHHH
Q 003691 402 DTHGYVGSDLAALCTE 417 (802)
Q Consensus 402 ~t~g~~~~dl~~l~~~ 417 (802)
...|-.. +...++..
T Consensus 214 ~A~Gs~R-dALsLLdQ 228 (700)
T PRK12323 214 AAQGSMR-DALSLTDQ 228 (700)
T ss_pred HcCCCHH-HHHHHHHH
Confidence 7776543 44444443
No 171
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=1.9e-11 Score=140.82 Aligned_cols=188 Identities=21% Similarity=0.290 Sum_probs=134.4
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC--------------
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 537 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~-------------- 537 (802)
.+.+|++|.|++.+++.|...+.. -..++.+||+||+|+|||++|+++|+.+..
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIES------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 356899999999999999887653 134556999999999999999999998753
Q ss_pred ----------eEEEEeCcchhhhccCccHHHHHHHHHHHh----hCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHH
Q 003691 538 ----------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 603 (802)
Q Consensus 538 ----------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~ 603 (802)
+++.+++.. ...-..++.+.+.+. .....|++|||+|.+- ...++.
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~na 138 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNA 138 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHH
Confidence 233333221 012345555554332 3455799999999872 346788
Q ss_pred HHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCC
Q 003691 604 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGF 682 (802)
Q Consensus 604 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g~ 682 (802)
||..|+. +...+++|.+|+.++.|.+++.+ |+. .+.|.+++.++..++++..+++..+.- +..+..|++.+.|
T Consensus 139 LLK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G- 212 (563)
T PRK06647 139 LLKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG- 212 (563)
T ss_pred HHHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9999885 44567777777888889899887 887 789999999999999988876655432 2335667776654
Q ss_pred CHHHHHHHHHHHHHH
Q 003691 683 SGADITEVCQRACKY 697 (802)
Q Consensus 683 sg~di~~~~~~a~~~ 697 (802)
+.+++.+++..+...
T Consensus 213 dlR~alslLdklis~ 227 (563)
T PRK06647 213 SVRDAYTLFDQVVSF 227 (563)
T ss_pred CHHHHHHHHHHHHhh
Confidence 677777777665443
No 172
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=1.8e-11 Score=138.74 Aligned_cols=188 Identities=22% Similarity=0.297 Sum_probs=134.4
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC---------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 537 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~--------------- 537 (802)
+.+|+++.|++.+++.|...+.. + ..+..+|||||+|+|||++|+++|..+..
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 46899999999999999887652 1 34556899999999999999999988731
Q ss_pred ---------eEEEEeCcchhhhccCccHHHHHHHHHHHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHH
Q 003691 538 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 604 (802)
Q Consensus 538 ---------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 604 (802)
.++.+++..- ..-..|+.+.+.... ....|++|||+|.+- ...++.|
T Consensus 78 ~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------------~~A~NAL 137 (535)
T PRK08451 78 QSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------------KEAFNAL 137 (535)
T ss_pred HHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHH
Confidence 1333332210 113456666654322 234699999998872 4567889
Q ss_pred HHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHccCCC
Q 003691 605 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTHGFS 683 (802)
Q Consensus 605 L~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~g~s 683 (802)
|..|+.. ...+.+|.+|+.+..|.+++++ |+. .++|.+++.++....++..+++.++.- +..+..+++.+.| +
T Consensus 138 LK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc~-~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-d 211 (535)
T PRK08451 138 LKTLEEP--PSYVKFILATTDPLKLPATILS--RTQ-HFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-S 211 (535)
T ss_pred HHHHhhc--CCceEEEEEECChhhCchHHHh--hce-eEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 9999965 3455666666778889999987 874 889999999998888888887655432 2346677776654 7
Q ss_pred HHHHHHHHHHHHHHH
Q 003691 684 GADITEVCQRACKYA 698 (802)
Q Consensus 684 g~di~~~~~~a~~~a 698 (802)
.+++.+++..|...+
T Consensus 212 lR~alnlLdqai~~~ 226 (535)
T PRK08451 212 LRDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHHHHhc
Confidence 788888887777655
No 173
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.33 E-value=3.5e-11 Score=124.63 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=100.5
Q ss_pred ceeeeecCCCCchhHHHHHHHHHhC---CeEEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCC
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 588 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~ 588 (802)
..++|+||+|||||+|++++++... ....++...+... ...++++.... ..+++|||++.+.+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~--- 112 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGD--- 112 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCC---
Confidence 4699999999999999999998764 2344444433221 11122222222 258999999998532
Q ss_pred CCCCCCCchHHHHHHHHHHhhccCCCCc-EEEEEecCCCCC---CCccccCCCCcc--eEEEecCCCHHHHHHHHHHHhc
Q 003691 589 STGDAGGAADRVLNQLLTEMDGMNAKKT-VFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEASRLQIFKACLR 662 (802)
Q Consensus 589 ~~~~~~~~~~~vl~~lL~~ld~~~~~~~-v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~Il~~~l~ 662 (802)
..... .|...++.....++ .+|+++++.|.. +.|.+.+ |+. .++.+.+|+.++|.+|++..+.
T Consensus 113 ------~~~~~---~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 113 ------ELWEM---AIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred ------HHHHH---HHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 11122 23333333222333 466666666655 5788887 885 7999999999999999998665
Q ss_pred cC--CCCCccCHHHHHHHccCCCHHHHHHHHHHHH
Q 003691 663 KS--PISPDVDLSALARYTHGFSGADITEVCQRAC 695 (802)
Q Consensus 663 ~~--~~~~~~~~~~la~~t~g~sg~di~~~~~~a~ 695 (802)
.. .+++++ ++.|++...| +.+.+.+++....
T Consensus 182 ~~~~~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~ 214 (235)
T PRK08084 182 LRGFELPEDV-GRFLLKRLDR-EMRTLFMTLDQLD 214 (235)
T ss_pred HcCCCCCHHH-HHHHHHhhcC-CHHHHHHHHHHHH
Confidence 43 444333 6777776653 6777777777643
No 174
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.33 E-value=3.6e-11 Score=124.23 Aligned_cols=175 Identities=14% Similarity=0.172 Sum_probs=113.2
Q ss_pred CCceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhcc
Q 003691 510 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 586 (802)
Q Consensus 510 ~~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r 586 (802)
...+++|+||+|||||+||++++... +.+++.+++.++... +.. .....+++|||+|.+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l~~-- 104 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FDF--DPEAELYAVDDVERLDD-- 104 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhcCc--
Confidence 34579999999999999999999886 557788887665321 111 12346999999998621
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCC-CC--CCCccccCCCCc--ceEEEecCCCHHHHHHHHHHHh
Q 003691 587 GSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR-PD--IIDPALLRPGRL--DQLIYIPLPDEASRLQIFKACL 661 (802)
Q Consensus 587 ~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~-~~--~ld~allr~gRf--~~~i~~~~p~~~~r~~Il~~~l 661 (802)
. ....|+..++.....+..+++.+++. |. .+.+.+.+ || ...+.+|+|+.+++..+++...
T Consensus 105 ---------~---~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 105 ---------A---QQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred ---------h---HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 1 12344445544433444434444443 31 34566665 77 5799999999999999998877
Q ss_pred ccCCCCCcc-CHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcccccccccccccccHHHHHHHH
Q 003691 662 RKSPISPDV-DLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESM 740 (802)
Q Consensus 662 ~~~~~~~~~-~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al 740 (802)
....+.-+. -+..|++... -+.+++.++++.....|.... ..||...+++++
T Consensus 171 ~~~~v~l~~~al~~L~~~~~-gn~~~l~~~l~~l~~~~~~~~--------------------------~~i~~~~~~~~l 223 (227)
T PRK08903 171 AERGLQLADEVPDYLLTHFR-RDMPSLMALLDALDRYSLEQK--------------------------RPVTLPLLREML 223 (227)
T ss_pred HHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhC--------------------------CCCCHHHHHHHH
Confidence 654443222 3566676443 467888888887554443332 368888887776
Q ss_pred h
Q 003691 741 K 741 (802)
Q Consensus 741 ~ 741 (802)
.
T Consensus 224 ~ 224 (227)
T PRK08903 224 A 224 (227)
T ss_pred h
Confidence 5
No 175
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=3.4e-11 Score=132.98 Aligned_cols=185 Identities=20% Similarity=0.316 Sum_probs=125.4
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------------
Q 003691 202 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 265 (802)
Q Consensus 202 ~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------------- 265 (802)
.|++|+|++..++.|++++..+..++. .++...+..+||+||+|+|||++|+++|+.+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~---~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVA---AAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccc---ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 478999999999999999987544322 2333457789999999999999999999876432
Q ss_pred -------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhc
Q 003691 266 -------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDG 334 (802)
Q Consensus 266 -------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 334 (802)
+..+... + ..-.-..++.+++.+.. ....|+||||+|.+.+. ..+.|++.|+.
T Consensus 80 ~~~~hpD~~~i~~~---~--~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAPE---G--LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEeccc---c--ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHHHHHHHhhc
Confidence 1111110 0 11123457777776643 23469999999998432 34668888876
Q ss_pred ccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhhcCCCchHHHHHH
Q 003691 335 LKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGSDLAAL 414 (802)
Q Consensus 335 ~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l 414 (802)
... ..++|+ +|+.++.+.+++++ |+ ..+.++.|+.++..+.|... ..+. ......++..+.|..+..+.-+
T Consensus 144 p~~-~~~fIL-~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 144 PPP-RTVWLL-CAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CCC-CCeEEE-EECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHHHHHh
Confidence 433 334444 45558899999998 66 67899999999887777532 2232 3345677888888887665443
No 176
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.33 E-value=5.3e-11 Score=120.05 Aligned_cols=167 Identities=23% Similarity=0.353 Sum_probs=120.2
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechh
Q 003691 197 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPE 273 (802)
Q Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~ 273 (802)
.+..+.++++.|++.+++.|.+.....+. -.+..++||+|++|||||++++++..++ |..++.|...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~---------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ---------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc---------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 45678999999999999999777654221 2477899999999999999999999876 55678887666
Q ss_pred hhhhccchhHHHHHHHHHHHH-hcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhccc-C-CCcEEEEEecCCC
Q 003691 274 IMSKLAGESESNLRKAFEEAE-KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-S-RAHVIVMGATNRP 350 (802)
Q Consensus 274 l~~~~~g~~~~~l~~vf~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-~-~~~vivI~~tn~~ 350 (802)
+. .+..+++... ...+-|||+|++.+=. ++ .-...|...|+|-- . ..+|++.+|+|+.
T Consensus 91 L~---------~l~~l~~~l~~~~~kFIlf~DDLsFe~-------~d---~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 91 LG---------DLPELLDLLRDRPYKFILFCDDLSFEE-------GD---TEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred hc---------cHHHHHHHHhcCCCCEEEEecCCCCCC-------Cc---HHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 53 2334444443 3356799999976421 11 12356777777633 2 3578899999976
Q ss_pred CCCCH---------------------HhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc
Q 003691 351 NSIDP---------------------ALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA 391 (802)
Q Consensus 351 ~~ld~---------------------al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~ 391 (802)
+-+.+ .+.-..||...+.|..|+.++-++|++.+++...+.
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~ 213 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLE 213 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 54432 222246899999999999999999999998766554
No 177
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.33 E-value=4.2e-11 Score=134.67 Aligned_cols=172 Identities=27% Similarity=0.453 Sum_probs=120.0
Q ss_pred cccCCCCcccccChHHHHHH---HHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEech
Q 003691 196 ERLNEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGP 272 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~---l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~ 272 (802)
+++.+.+++++.|.++.+.. +++++.. ....+++|+|||||||||+|+++++.++..++.+++.
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~ 70 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAV 70 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 35677889999999998766 7777753 2244799999999999999999999999999988864
Q ss_pred hhhhhccchhHHHHHHHHHHHH----hcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecC
Q 003691 273 EIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATN 348 (802)
Q Consensus 273 ~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn 348 (802)
.. ....++.+++.+. .....+|||||+|.+... ..+.|+..++. ..+++|++|+
T Consensus 71 ~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-----------~q~~LL~~le~----~~iilI~att 128 (413)
T PRK13342 71 TS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-----------QQDALLPHVED----GTITLIGATT 128 (413)
T ss_pred cc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-----------HHHHHHHHhhc----CcEEEEEeCC
Confidence 32 1234555555543 235679999999987421 23455555543 4566666543
Q ss_pred --CCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccC-----ccccchhhHHHHhhcCCC
Q 003691 349 --RPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNM-----KLAEDVDLERVAKDTHGY 406 (802)
Q Consensus 349 --~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~-----~l~~~~~l~~la~~t~g~ 406 (802)
....+++++++ |+ ..+.+..++.++...+++..+... .+ ++..+..++..+.|.
T Consensus 129 ~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i-~~~al~~l~~~s~Gd 189 (413)
T PRK13342 129 ENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVEL-DDEALDALARLANGD 189 (413)
T ss_pred CChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHhCCCC
Confidence 34578889988 66 678899999999988888665431 22 233456666666553
No 178
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=2e-11 Score=137.63 Aligned_cols=173 Identities=17% Similarity=0.274 Sum_probs=118.2
Q ss_pred ceeeeecCCCCchhHHHHHHHHHh-----CCeEEEEeCcchhhhccCccHH---HHHHHHHHHhhCCCeEEEEcccchhh
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEA---NVREIFDKARQSAPCVLFFDELDSIA 583 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~-----~~~~i~v~~~~l~~~~vg~se~---~i~~lf~~a~~~~p~il~iDEid~l~ 583 (802)
.+++|||++|+|||+|++++++++ +..++++++.++...+...... .+....+..+ ...+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~--~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEIC--QNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhc--cCCEEEEecccccc
Confidence 459999999999999999999965 3567889998887765533221 2222222222 34699999999884
Q ss_pred hccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCC---CCccccCCCCcc--eEEEecCCCHHHHHHHHH
Q 003691 584 TQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEASRLQIFK 658 (802)
Q Consensus 584 ~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~Il~ 658 (802)
++ ......|...++.....++.+|+++...|.. +++.+.+ ||. .++.+.+|+.++|.+|++
T Consensus 220 ~k------------~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 220 YK------------EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred CC------------HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHH
Confidence 32 2334455555555544555556655555544 5778887 885 778899999999999999
Q ss_pred HHhccCCCC---CccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q 003691 659 ACLRKSPIS---PDVDLSALARYTHGFSGADITEVCQRACKYAIRE 701 (802)
Q Consensus 659 ~~l~~~~~~---~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~ 701 (802)
..++...+. ++.-+..|++...| +.+.+.++|.++...+...
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~ 330 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQN 330 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcc
Confidence 998764431 12225667766553 6889999998887666553
No 179
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.8e-11 Score=131.29 Aligned_cols=178 Identities=25% Similarity=0.379 Sum_probs=123.5
Q ss_pred CCceeeeecCCCCchhHHHHHHHHHhCCe-----EEEEeCcchhhhc---------------cCcc-HHHHHHHHHHHhh
Q 003691 510 PSKGVLFYGPPGCGKTLLAKAIANECQAN-----FISVKGPELLTMW---------------FGES-EANVREIFDKARQ 568 (802)
Q Consensus 510 ~~~gill~GppGtGKT~lakala~~~~~~-----~i~v~~~~l~~~~---------------vg~s-e~~i~~lf~~a~~ 568 (802)
.|.++++|||||||||.+++.++.++... +++|+|..+.+.| .|.+ .+....+++....
T Consensus 41 ~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~ 120 (366)
T COG1474 41 RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSK 120 (366)
T ss_pred CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh
Confidence 34459999999999999999999998544 8999997765432 1222 2233344444333
Q ss_pred -CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCC---CCCccccCCCCcc-eEE
Q 003691 569 -SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD---IIDPALLRPGRLD-QLI 643 (802)
Q Consensus 569 -~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allr~gRf~-~~i 643 (802)
...-|+++||+|.|....+ .++-.|+...+.. ..++.+|+.+|..+ .+||.+.+ +|. ..|
T Consensus 121 ~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I 185 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEI 185 (366)
T ss_pred cCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCccee
Confidence 3456999999999975421 5777777766654 66789999999874 68898887 554 568
Q ss_pred EecCCCHHHHHHHHHHHhccCC---CCCccCHHHHHHHccCCCH--HHHHHHHHHHHHHHHHHH
Q 003691 644 YIPLPDEASRLQIFKACLRKSP---ISPDVDLSALARYTHGFSG--ADITEVCQRACKYAIREN 702 (802)
Q Consensus 644 ~~~~p~~~~r~~Il~~~l~~~~---~~~~~~~~~la~~t~g~sg--~di~~~~~~a~~~a~~~~ 702 (802)
.||+++.+|...|++...+..- .-++.-++.+|......+| +--..+|+.|+..|.++.
T Consensus 186 ~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~ 249 (366)
T COG1474 186 VFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREG 249 (366)
T ss_pred eeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999998876431 1122224555554443333 333468999999998765
No 180
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=8e-11 Score=136.40 Aligned_cols=189 Identities=17% Similarity=0.244 Sum_probs=130.1
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe-------------
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 538 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~------------- 538 (802)
.+.+|++|.|++.+++.|+..+.. -+.+.++||+||+||||||+|+++|+.+.+.
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 356899999999999998876542 1455679999999999999999999998652
Q ss_pred -------------------EEEEeCcchhhhccCccHHHHHHHHHHH----hhCCCeEEEEcccchhhhccCCCCCCCCC
Q 003691 539 -------------------FISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGG 595 (802)
Q Consensus 539 -------------------~i~v~~~~l~~~~vg~se~~i~~lf~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~ 595 (802)
++.+++... .....|+.+.+.. ......|++|||+|.+-
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------ 140 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------ 140 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC------------
Confidence 222222110 1134566555444 23345799999999873
Q ss_pred chHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CccCHHH
Q 003691 596 AADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSA 674 (802)
Q Consensus 596 ~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~ 674 (802)
....+.||..|+... ...++|.+|+.++.|-+.+.+ |+. .+.|.+++.++....++..+++..+. ++..+..
T Consensus 141 --~~a~naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~ 213 (620)
T PRK14954 141 --TAAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQLQMICRAEGIQIDADALQL 213 (620)
T ss_pred --HHHHHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hce-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 234688999998643 345555566677888888887 775 89999999999888888877655432 2234677
Q ss_pred HHHHccCCCHHHHHHHHHHHHHHH
Q 003691 675 LARYTHGFSGADITEVCQRACKYA 698 (802)
Q Consensus 675 la~~t~g~sg~di~~~~~~a~~~a 698 (802)
|++.+.| +.+++.+.+.....++
T Consensus 214 La~~s~G-dlr~al~eLeKL~~y~ 236 (620)
T PRK14954 214 IARKAQG-SMRDAQSILDQVIAFS 236 (620)
T ss_pred HHHHhCC-CHHHHHHHHHHHHHhc
Confidence 7776654 5566666665554444
No 181
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.31 E-value=2.6e-11 Score=137.89 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhc
Q 003691 283 ESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRR 359 (802)
Q Consensus 283 ~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r 359 (802)
.++.|..+..+.-..|++|++|| |.+..+...+.+|-..+..+.. .+|..+++.+.||....+
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDE----------PTNHLD~~~i~WLe~~L~~~~g----tviiVSHDR~FLd~V~t~ 219 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDE----------PTNHLDLESIEWLEDYLKRYPG----TVIVVSHDRYFLDNVATH 219 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcC----------CCcccCHHHHHHHHHHHHhCCC----cEEEEeCCHHHHHHHhhh
Confidence 35667777888888999999999 6666777778888888875544 344457877766665544
No 182
>PF02359 CDC48_N: Cell division protein 48 (CDC48), N-terminal domain; InterPro: IPR003338 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The VAT protein of the archaebacterium Thermoplasma acidophilum, like all other members of the Cdc48/p97 family of AAA ATPases, has two ATPase domains and a 185-residue amino-terminal substrate-recognition domain, VAT-N. VAT shows activity in protein folding and unfolding and thus shares the common function of these ATPases in disassembly and/or degradation of protein complexes. VAT-N is composed of two equally sized subdomains. The amino-terminal subdomain VAT-Nn forms a double-psi beta-barrel whose pseudo-twofold symmetry is mirrored by an internal sequence repeat of 42 residues. The carboxy-terminal subdomain VAT-Nc forms a novel six-stranded beta-clam fold []. Together, VAT-Nn and VAT-Nc form a kidney-shaped structure, in close agreement with results from electron microscopy. VAT-Nn is related to numerous proteins including prokaryotic transcription factors, metabolic enzymes, the protease cofactors UFD1 and PrlF, and aspartic proteinases. ; GO: 0005524 ATP binding; PDB: 1CZ4_A 1CZ5_A 3CF3_C 3CF1_A 3CF2_A 1S3S_D 1E32_A 1R7R_A 2PJH_B 1CR5_B ....
Probab=99.31 E-value=1e-11 Score=107.25 Aligned_cols=80 Identities=39% Similarity=0.620 Sum_probs=67.0
Q ss_pred eEEEecccCC---CccEEEECHHHHhhcCCCCCCEEEEeccCCccEEEEEEecCCC--CCCeEEEcHHhHhhccccCCCe
Q 003691 26 RLVVDEAIND---DNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELC--EASKVRVNKVVRSNLRVRLGDV 100 (802)
Q Consensus 26 ~~~v~~~~~~---~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~r~~~~~~~~~~ 100 (802)
+|+|.++..+ ++++|+|||+.|.+||+..||+|.|.| ++ .++|.||+.... +++.|+|+..+|+|+|+++||.
T Consensus 1 ~L~V~~~p~~~~~~~n~v~v~~~~m~~l~l~~gd~v~i~g-~~-~tv~~v~~~~~~~~~~g~I~l~~~~R~n~~v~igd~ 78 (87)
T PF02359_consen 1 RLRVAEAPSDEDAGTNCVRVSPEDMEELGLFPGDVVLISG-KR-KTVAFVFPDRPDDSPPGVIRLSGIQRKNAGVSIGDR 78 (87)
T ss_dssp EEEEEE-SSSHHHCTTEEEEEHHHHHCTTT-TTEEEEEET-TT-EEEEEEEEECCSTTCTTEEEE-HHHHHHCT--TTSE
T ss_pred CcEEEeCCChHhCCCCEEEEcHHHHHHcCCCCccEEEEeC-Cc-eEEEEEEECCCCCCCCCEEEECHHHHhhCCcCCCCE
Confidence 5899999844 899999999999999999999999999 43 489999987544 7899999999999999999999
Q ss_pred EEEEeCC
Q 003691 101 VSVHPCP 107 (802)
Q Consensus 101 v~v~~~~ 107 (802)
|+|+++.
T Consensus 79 V~V~~~~ 85 (87)
T PF02359_consen 79 VTVRPYD 85 (87)
T ss_dssp EEEEEET
T ss_pred EEEEECC
Confidence 9999975
No 183
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=3.3e-11 Score=133.80 Aligned_cols=187 Identities=20% Similarity=0.315 Sum_probs=130.4
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe----------E--
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----------F-- 539 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~----------~-- 539 (802)
.+.+|+++.|++.+.+.+...+... ..+++++||||||+|||++|+++|..+... +
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 3568999999999999888776531 345679999999999999999999987542 1
Q ss_pred EEEeCcchhhhccCccHHHHHHHHHHHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCC
Q 003691 540 ISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKK 615 (802)
Q Consensus 540 i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~ 615 (802)
+.+++. .......++.+++.+.. ..+.++|+||+|.+. ...++.|+..|+.. ..
T Consensus 80 ~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~--------------~~~~~~ll~~le~~--~~ 137 (367)
T PRK14970 80 FELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS--------------SAAFNAFLKTLEEP--PA 137 (367)
T ss_pred EEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC--------------HHHHHHHHHHHhCC--CC
Confidence 112111 11224567788876643 234799999999873 23467788888753 33
Q ss_pred cEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHH
Q 003691 616 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRA 694 (802)
Q Consensus 616 ~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~sg~di~~~~~~a 694 (802)
..++|.+|+.+..+.+++.+ |+. .+.|++|+.++...++...+.+.++. ++..+..++..+.| +.+.+.+.++..
T Consensus 138 ~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl 213 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRV 213 (367)
T ss_pred ceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 45566667777888899887 775 78999999999999998877765543 22346677766543 556555555555
Q ss_pred HH
Q 003691 695 CK 696 (802)
Q Consensus 695 ~~ 696 (802)
..
T Consensus 214 ~~ 215 (367)
T PRK14970 214 VT 215 (367)
T ss_pred HH
Confidence 43
No 184
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=4.4e-11 Score=133.61 Aligned_cols=189 Identities=18% Similarity=0.240 Sum_probs=128.9
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe-------------
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 538 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~------------- 538 (802)
.+.+|++|.|++.+++.|+..+.. -+.+..+||+||||+|||++|+++|..+...
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRM------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHh------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 346899999999999988877652 1345679999999999999999999988542
Q ss_pred -------------------EEEEeCcchhhhccCccHHHHHHHHHHHh----hCCCeEEEEcccchhhhccCCCCCCCCC
Q 003691 539 -------------------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGG 595 (802)
Q Consensus 539 -------------------~i~v~~~~l~~~~vg~se~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~ 595 (802)
++.+++.+. .....|+.+.+.+. .....++|+||+|.+.
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~------------ 140 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS------------ 140 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC------------
Confidence 222222111 11345665555442 2334699999999873
Q ss_pred chHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CccCHHH
Q 003691 596 AADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSA 674 (802)
Q Consensus 596 ~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~ 674 (802)
..-.+.||..|+.. ....++|.+|+.+..|-+++.+ |+. .+.|++++.++..+.++..+++..+. ++..+..
T Consensus 141 --~~~~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~ 213 (397)
T PRK14955 141 --IAAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQL 213 (397)
T ss_pred --HHHHHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 22456788888743 3355555566667788888876 776 88999999999888888887655432 2223567
Q ss_pred HHHHccCCCHHHHHHHHHHHHHHH
Q 003691 675 LARYTHGFSGADITEVCQRACKYA 698 (802)
Q Consensus 675 la~~t~g~sg~di~~~~~~a~~~a 698 (802)
|++.+.| +.+.+.+.+..+..++
T Consensus 214 l~~~s~g-~lr~a~~~L~kl~~~~ 236 (397)
T PRK14955 214 IGRKAQG-SMRDAQSILDQVIAFS 236 (397)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHhc
Confidence 7776654 5666666666655443
No 185
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=9.6e-11 Score=136.56 Aligned_cols=184 Identities=20% Similarity=0.285 Sum_probs=129.9
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe-------------
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 538 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~------------- 538 (802)
...+|+++.|++.+++.|...+... +...++||+||+|+|||++|+++|..+.+.
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 3468999999999999998876631 234579999999999999999999998642
Q ss_pred -------------EEEEeCcchhhhccCccHHHHHHHHHHHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHH
Q 003691 539 -------------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVL 601 (802)
Q Consensus 539 -------------~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl 601 (802)
++.++.. .+.....++++...+.. ....|+||||+|.+- ....
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~ 138 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAF 138 (620)
T ss_pred HHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHH
Confidence 2222221 12334578888877653 234699999999872 3467
Q ss_pred HHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCC-ccCHHHHHHHcc
Q 003691 602 NQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISP-DVDLSALARYTH 680 (802)
Q Consensus 602 ~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~t~ 680 (802)
+.||..|+. ....+++|++|+.++.|-+.+++ |+. .+.|+.++.++....++..+.+..+.- +..+..+++.+.
T Consensus 139 naLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~ 213 (620)
T PRK14948 139 NALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQ 213 (620)
T ss_pred HHHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 889999994 44567777778888888888887 885 789999988887777777665543331 123667777665
Q ss_pred CCCHHHHHHHHHH
Q 003691 681 GFSGADITEVCQR 693 (802)
Q Consensus 681 g~sg~di~~~~~~ 693 (802)
| +.+++.++++.
T Consensus 214 G-~lr~A~~lLek 225 (620)
T PRK14948 214 G-GLRDAESLLDQ 225 (620)
T ss_pred C-CHHHHHHHHHH
Confidence 4 34555555544
No 186
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=6.8e-11 Score=136.86 Aligned_cols=193 Identities=20% Similarity=0.210 Sum_probs=134.8
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEe-C-------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK-G------- 544 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~-~------- 544 (802)
..+|+++.|++.+++.|...+.. -+.+..+||+||+|+|||++|+++|+.+.+.....+ +
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 46899999999999999887653 134667999999999999999999998864321111 0
Q ss_pred -------------cchhhhcc--CccHHHHHHHHHHHhhC----CCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHH
Q 003691 545 -------------PELLTMWF--GESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLL 605 (802)
Q Consensus 545 -------------~~l~~~~v--g~se~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL 605 (802)
++++.... .-.-..|+++.+.++.. ...|+||||+|.+- ....+.||
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------------~~a~naLL 153 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------------TAAFNALL 153 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------HHHHHHHH
Confidence 11110000 01134577777766533 35799999999873 34578899
Q ss_pred HHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCCCH
Q 003691 606 TEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFSG 684 (802)
Q Consensus 606 ~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~sg 684 (802)
..|+.. ...+++|.+|+.++.+-+.+++ |+. .+.|..|+.++....++..+++..+.-+ ..+..+++.+.| +.
T Consensus 154 KtLEeP--p~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dl 227 (598)
T PRK09111 154 KTLEEP--PPHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SV 227 (598)
T ss_pred HHHHhC--CCCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 999854 3456666677777778788876 885 8999999999999999988876654433 235666776654 67
Q ss_pred HHHHHHHHHHHHH
Q 003691 685 ADITEVCQRACKY 697 (802)
Q Consensus 685 ~di~~~~~~a~~~ 697 (802)
+++.+++..+...
T Consensus 228 r~al~~Ldkli~~ 240 (598)
T PRK09111 228 RDGLSLLDQAIAH 240 (598)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777665443
No 187
>PLN03025 replication factor C subunit; Provisional
Probab=99.30 E-value=6.2e-11 Score=128.83 Aligned_cols=175 Identities=19% Similarity=0.224 Sum_probs=118.2
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC-----CcEEEEe
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFLIN 270 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~-----~~~v~v~ 270 (802)
+++.+.+++++.|.++.++.|+.++.. ....+++|+|||||||||+|+++|+++. ..++.++
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln 71 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN 71 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec
Confidence 467888999999999999999887653 1224699999999999999999999872 2355666
Q ss_pred chhhhhhccchhHHHHHHHHHHHHh-------cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEE
Q 003691 271 GPEIMSKLAGESESNLRKAFEEAEK-------NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIV 343 (802)
Q Consensus 271 ~~~l~~~~~g~~~~~l~~vf~~a~~-------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viv 343 (802)
+++..+ ...++..+..... ....+++|||+|.+... ..+.|+..|+..... ..+
T Consensus 72 ~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-----------aq~aL~~~lE~~~~~--t~~ 132 (319)
T PLN03025 72 ASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-----------AQQALRRTMEIYSNT--TRF 132 (319)
T ss_pred cccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-----------HHHHHHHHHhcccCC--ceE
Confidence 544321 1123333222111 23579999999988532 235566667654332 334
Q ss_pred EEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCC
Q 003691 344 MGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHG 405 (802)
Q Consensus 344 I~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g 405 (802)
+.++|....+.+++++ |+ ..+.+..|+.++....++..++...+. ++..+..++....|
T Consensus 133 il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 133 ALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred EEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5577788888888887 54 468899999999988888766543322 23456777766654
No 188
>PRK05642 DNA replication initiation factor; Validated
Probab=99.30 E-value=5.9e-11 Score=122.81 Aligned_cols=162 Identities=16% Similarity=0.208 Sum_probs=111.2
Q ss_pred ceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCC
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 588 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~ 588 (802)
..++|+||+|+|||+|++++++++ +...++++..++... ...+.+..+.. .+++|||++.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~--d~LiiDDi~~~~~~--- 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQY--ELVCLDDLDVIAGK--- 112 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhhC--CEEEEechhhhcCC---
Confidence 568999999999999999999765 456778888777542 12233333333 48999999987432
Q ss_pred CCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCC---CCccccCCCCcc--eEEEecCCCHHHHHHHHHHHhcc
Q 003691 589 STGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEASRLQIFKACLRK 663 (802)
Q Consensus 589 ~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~Il~~~l~~ 663 (802)
......|+..++.....++.+|++++..|.. +.|.+.+ ||. .++.+.+|+.++|..|++..+..
T Consensus 113 ---------~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 113 ---------ADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred ---------hHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 1223456666666555667788888877744 3688887 884 67788999999999999965544
Q ss_pred C--CCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q 003691 664 S--PISPDVDLSALARYTHGFSGADITEVCQRACKYAI 699 (802)
Q Consensus 664 ~--~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~ 699 (802)
. .++++ -++.|++... -+.+.+.+++......++
T Consensus 182 ~~~~l~~e-v~~~L~~~~~-~d~r~l~~~l~~l~~~~l 217 (234)
T PRK05642 182 RGLHLTDE-VGHFILTRGT-RSMSALFDLLERLDQASL 217 (234)
T ss_pred cCCCCCHH-HHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 3 33332 2567776655 467777777776554333
No 189
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.29 E-value=5.7e-11 Score=136.94 Aligned_cols=200 Identities=25% Similarity=0.387 Sum_probs=127.8
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCc
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAF 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~ 265 (802)
+++.+.+|+++.|.+..++.++..+.. ..+.++||+||||||||++|+++.... +.+
T Consensus 57 ~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~ 123 (531)
T TIGR02902 57 EKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAA 123 (531)
T ss_pred HhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCC
Confidence 456778999999999999988765422 235689999999999999999997642 356
Q ss_pred EEEEechhhh-------hhccchhHHHH---HHHHH----------HHHhcCCeEEEecccccccCCCCCCchhHHHHHH
Q 003691 266 FFLINGPEIM-------SKLAGESESNL---RKAFE----------EAEKNAPSIIFIDELDSIAPKREKTHGEVERRIV 325 (802)
Q Consensus 266 ~v~v~~~~l~-------~~~~g~~~~~l---~~vf~----------~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 325 (802)
++.++|.... ....+.....+ ...|. ........+|||||++.+.+. ..
T Consensus 124 fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~-----------~q 192 (531)
T TIGR02902 124 FVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV-----------QM 192 (531)
T ss_pred EEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-----------HH
Confidence 8888875310 00000000000 00000 011223469999999988532 23
Q ss_pred HHHHHhhhccc--------------------------CCCc-EEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHH
Q 003691 326 SQLLTLMDGLK--------------------------SRAH-VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 378 (802)
Q Consensus 326 ~~Ll~~ld~~~--------------------------~~~~-vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~ 378 (802)
+.|+..|+.-. .... .++.+|++.++.+++++++ |+ .++.++.++.+++.
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~ 269 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHH
Confidence 44444443210 0112 3445677789999999998 76 46889999999999
Q ss_pred HHHHHHhccCccc-cchhhHHHHhhcCCCchHHHHHHHHHHHHHhHH
Q 003691 379 EILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCTEAALQCIR 424 (802)
Q Consensus 379 ~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~ 424 (802)
+|++..+++..+. ++..++.++..+ +.++++..+++.|+..+..
T Consensus 270 ~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~ 314 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALG 314 (531)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhh
Confidence 9999887765533 223345555433 3678888898888765543
No 190
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.29 E-value=4.8e-11 Score=129.87 Aligned_cols=176 Identities=20% Similarity=0.315 Sum_probs=132.3
Q ss_pred CceeeeecCCCCchhHHHHHHHHHhC-----CeEEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhc
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 585 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~~-----~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~ 585 (802)
...++||||.|+|||+|++|++++.. ..++++...++...++.....+-..-|++-+ .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 34499999999999999999999873 4578888888887776655555555677766 4469999999999653
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCC---CccccCCCCcc--eEEEecCCCHHHHHHHHHHH
Q 003691 586 RGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEASRLQIFKAC 660 (802)
Q Consensus 586 r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allr~gRf~--~~i~~~~p~~~~r~~Il~~~ 660 (802)
++...+|...++.+...++.+|+.+...|..+ +|.|.+ ||. .++.+.+||.+.|..|++..
T Consensus 191 ------------~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 191 ------------ERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred ------------hhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHH
Confidence 33466777777777767777888888888765 477777 887 56788999999999999997
Q ss_pred hccCCCCCccC-HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q 003691 661 LRKSPISPDVD-LSALARYTHGFSGADITEVCQRACKYAIRENI 703 (802)
Q Consensus 661 l~~~~~~~~~~-~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~ 703 (802)
....++.-+.+ +..+|.... -+.+++..++......|.....
T Consensus 257 a~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~~ 299 (408)
T COG0593 257 AEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTKR 299 (408)
T ss_pred HHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcCc
Confidence 76555443222 566666544 4678888888888887776653
No 191
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.29 E-value=2.6e-10 Score=136.31 Aligned_cols=162 Identities=22% Similarity=0.333 Sum_probs=117.4
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh---------
Q 003691 205 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM--------- 275 (802)
Q Consensus 205 ~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~--------- 275 (802)
+..|+++.+++|.+++...... +-..+..++|+||||||||++++.+|+.++.+++.++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 4789999999998887642211 113567899999999999999999999999998887754321
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhccc-------------CCCcEE
Q 003691 276 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------------SRAHVI 342 (802)
Q Consensus 276 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------------~~~~vi 342 (802)
..|.|.....+...+..+....| ++++||+|.+....... ..+.|+..+|.-+ .-++++
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-------PASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-------HHHHHHHHhccccEEEEecccccccccCCceE
Confidence 13445555555555555443444 89999999987653221 2355666666311 125789
Q ss_pred EEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHh
Q 003691 343 VMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT 385 (802)
Q Consensus 343 vI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~ 385 (802)
+|+|+|.. .++++++. |+ ..|.+..++.++..+|.+.++
T Consensus 468 ~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhh
Confidence 99999987 59999997 88 468999999999999988766
No 192
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.28 E-value=1.8e-10 Score=128.05 Aligned_cols=201 Identities=22% Similarity=0.328 Sum_probs=123.9
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC---------CcEEEEechhh
Q 003691 204 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---------AFFFLINGPEI 274 (802)
Q Consensus 204 ~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~---------~~~v~v~~~~l 274 (802)
+++.|.+++++.|..++.-.+. + ..+.+++|+||||||||++++.++..+. ..+++++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 4689999999999888763221 1 3456799999999999999999997653 35788888543
Q ss_pred hh----------hcc--c--------hhHHHHHHHHHHHHh-cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhh
Q 003691 275 MS----------KLA--G--------ESESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD 333 (802)
Q Consensus 275 ~~----------~~~--g--------~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 333 (802)
.+ ... + ...+.+..++..... ..+.+++|||+|.+.... ..++.+|+.+.+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhcccc
Confidence 21 110 0 112233444554432 456789999999997321 123344554422
Q ss_pred ccc-CCCcEEEEEecCCCC---CCCHHhhccCCcc-eEEEeCCCCHHHHHHHHHHHhcc-C--ccccchhhHH---HHhh
Q 003691 334 GLK-SRAHVIVMGATNRPN---SIDPALRRFGRFD-REIDIGVPDEVGRLEILRIHTKN-M--KLAEDVDLER---VAKD 402 (802)
Q Consensus 334 ~~~-~~~~vivI~~tn~~~---~ld~al~r~~rf~-~~i~i~~P~~~~R~~Il~~~~~~-~--~l~~~~~l~~---la~~ 402 (802)
... ...++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++..++. . ...++..+.. ++..
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~ 235 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQ 235 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHH
Confidence 111 225788888888875 46777765 554 67899999999999999877642 1 1112222233 3334
Q ss_pred cCCCchHHHHHHHHHHHHHhHH
Q 003691 403 THGYVGSDLAALCTEAALQCIR 424 (802)
Q Consensus 403 t~g~~~~dl~~l~~~A~~~~~~ 424 (802)
+.|.... ...+|+.|+..+..
T Consensus 236 ~~Gd~R~-al~~l~~a~~~a~~ 256 (365)
T TIGR02928 236 EHGDARK-AIDLLRVAGEIAER 256 (365)
T ss_pred hcCCHHH-HHHHHHHHHHHHHH
Confidence 4555433 33456666554443
No 193
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=1.3e-10 Score=136.34 Aligned_cols=192 Identities=18% Similarity=0.221 Sum_probs=126.9
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEE-E------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF-L------ 268 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v-~------ 268 (802)
+++.+.+|++|.|++..++.|+.++... +.+..+||+||+||||||+|+++|+.+++... .
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~ 75 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV 75 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC
Confidence 4678899999999999999998887531 22455799999999999999999999865310 0
Q ss_pred -Eechhhhhh-------cc---chhHHHHHHHHHHHH----hcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhh
Q 003691 269 -INGPEIMSK-------LA---GESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD 333 (802)
Q Consensus 269 -v~~~~l~~~-------~~---g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 333 (802)
-+|..+... .. ...-..+|.+.+.+. .....|+||||+|.|. ....+.|+..|+
T Consensus 76 C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-----------~eAqNALLKtLE 144 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-----------RSSFNALLKTLE 144 (944)
T ss_pred chHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-----------HHHHHHHHHHHh
Confidence 001111100 00 012234555555443 2334699999999884 335577888887
Q ss_pred cccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCCchHHHH
Q 003691 334 GLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLA 412 (802)
Q Consensus 334 ~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~ 412 (802)
.... .+.+|.+|+.+..|.+.+++ |+ ..+.|..++..+....|+..+....+. .+..+..++..+.|-.+ ++.
T Consensus 145 EPP~--~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R-~AL 218 (944)
T PRK14949 145 EPPE--HVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMR-DAL 218 (944)
T ss_pred ccCC--CeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHH
Confidence 6433 56666678888889888887 65 668899999988888887665443322 23346777777777544 334
Q ss_pred HHHH
Q 003691 413 ALCT 416 (802)
Q Consensus 413 ~l~~ 416 (802)
.++.
T Consensus 219 nLLd 222 (944)
T PRK14949 219 SLTD 222 (944)
T ss_pred HHHH
Confidence 4443
No 194
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=9.9e-11 Score=133.40 Aligned_cols=188 Identities=17% Similarity=0.229 Sum_probs=128.2
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 265 (802)
.++.+.+|++|.|.+..++.|+.++... ..+..+||+||+|+||||+|+++|+.+++.
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 4567889999999999999998888631 234678999999999999999999998642
Q ss_pred --------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEecccccccCCCCCCchhHHHHHHHH
Q 003691 266 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 327 (802)
Q Consensus 266 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 327 (802)
++.+++.+ ...-..+|.+...+. .....|+||||+|.|.. ...+.
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NA 137 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNA 137 (702)
T ss_pred CHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHH
Confidence 23333221 112344566665542 23456999999998742 23567
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCC
Q 003691 328 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 406 (802)
Q Consensus 328 Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 406 (802)
|+..++... ..+.+|.+|+.+..+.+.+++ |+ ..+.+..++..+....+...+....+. ++..+..++..+.|
T Consensus 138 LLKtLEEPP--~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G- 211 (702)
T PRK14960 138 LLKTLEEPP--EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG- 211 (702)
T ss_pred HHHHHhcCC--CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 888887643 355666677778888888775 65 567899999988888887666544332 33456777777766
Q ss_pred chHHHHHHHHHH
Q 003691 407 VGSDLAALCTEA 418 (802)
Q Consensus 407 ~~~dl~~l~~~A 418 (802)
..+++..++..+
T Consensus 212 dLRdALnLLDQa 223 (702)
T PRK14960 212 SLRDALSLTDQA 223 (702)
T ss_pred CHHHHHHHHHHH
Confidence 344444444443
No 195
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=1e-10 Score=129.16 Aligned_cols=193 Identities=19% Similarity=0.236 Sum_probs=125.1
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEE-------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFL------- 268 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~------- 268 (802)
+++.+.+|++|.|++..++.++..+... ..+..+||+||+|+||||+|+++|+.+......
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~ 75 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRK 75 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 4677889999999999999998887531 224568999999999999999999987532100
Q ss_pred -Eechhhhh----------hccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhh
Q 003691 269 -INGPEIMS----------KLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD 333 (802)
Q Consensus 269 -v~~~~l~~----------~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 333 (802)
.+|.++.. ......-..++.+.+.+.. ....++||||+|.+.. ...+.|+..++
T Consensus 76 c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naLLk~lE 144 (363)
T PRK14961 76 CIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNALLKTLE 144 (363)
T ss_pred CHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHHHHHHh
Confidence 00111100 0001123445666655432 2345999999998732 23456777777
Q ss_pred cccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCcc-ccchhhHHHHhhcCCCchHHHH
Q 003691 334 GLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHGYVGSDLA 412 (802)
Q Consensus 334 ~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~ 412 (802)
.... .+.+|.+|+.++.+.+.+++ |+ ..+.+++|+.++..+++...++.... .++..+..++..+.|- .+++.
T Consensus 145 e~~~--~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~-~R~al 218 (363)
T PRK14961 145 EPPQ--HIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGS-MRDAL 218 (363)
T ss_pred cCCC--CeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHH
Confidence 5433 45556667778888888876 65 56899999999999888876655443 2334566677777663 33344
Q ss_pred HHHHH
Q 003691 413 ALCTE 417 (802)
Q Consensus 413 ~l~~~ 417 (802)
.++..
T Consensus 219 ~~l~~ 223 (363)
T PRK14961 219 NLLEH 223 (363)
T ss_pred HHHHH
Confidence 44433
No 196
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.28 E-value=2.5e-11 Score=127.85 Aligned_cols=132 Identities=25% Similarity=0.338 Sum_probs=94.8
Q ss_pred CceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCc------chhhhccCccHHHH---------------------HHHH
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP------ELLTMWFGESEANV---------------------REIF 563 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~~~~~i~v~~~------~l~~~~vg~se~~i---------------------~~lf 563 (802)
...++|+||||||||++|+++|..++.+++.+++. ++++.|.|...+.+ +.++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 45699999999999999999999999999998764 34444433222211 1122
Q ss_pred HHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC--------------CCCcEEEEEecCCCC--
Q 003691 564 DKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--------------AKKTVFIIGATNRPD-- 627 (802)
Q Consensus 564 ~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--------------~~~~v~vi~aTn~~~-- 627 (802)
..... ..++++|||+.+- ..+.+.|+..|+... ....+.||+|+|...
T Consensus 101 ~A~~~--g~~lllDEi~r~~--------------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~ 164 (262)
T TIGR02640 101 LAVRE--GFTLVYDEFTRSK--------------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYA 164 (262)
T ss_pred HHHHc--CCEEEEcchhhCC--------------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccc
Confidence 22222 3599999999852 346677777775421 113567999999863
Q ss_pred ---CCCccccCCCCcceEEEecCCCHHHHHHHHHHHh
Q 003691 628 ---IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL 661 (802)
Q Consensus 628 ---~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l 661 (802)
.+++++++ || ..++++.|+.++-.+|++.+.
T Consensus 165 g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 165 GVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56889998 98 589999999999999999875
No 197
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1e-10 Score=136.76 Aligned_cols=185 Identities=21% Similarity=0.293 Sum_probs=127.4
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe--------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 538 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~-------------- 538 (802)
..+|+++.|++.+++.|...+... +.+..+||+||+|+|||++|+++|..+...
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 568999999999999998776531 234558999999999999999999887531
Q ss_pred -----------EEEEeCcchhhhccCccHHHHHHHHHHHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHH
Q 003691 539 -----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 603 (802)
Q Consensus 539 -----------~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~ 603 (802)
++.+++.. ...-..++.+.+.+.. ....|+||||+|.+. ...++.
T Consensus 80 c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------------~~a~na 139 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------------TAAFNA 139 (585)
T ss_pred HHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------------HHHHHH
Confidence 22222211 0122345554443322 335799999999873 245788
Q ss_pred HHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCC
Q 003691 604 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGF 682 (802)
Q Consensus 604 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~ 682 (802)
||..|+... ..+++|.+|+.++.+.+.+.+ |+. .+.|+.++..+...+++..+.+..+.-+ ..+..|+..+.|
T Consensus 140 LLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G- 213 (585)
T PRK14950 140 LLKTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG- 213 (585)
T ss_pred HHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 899988643 355666667777778788876 875 7899999999999999888766554322 235677776654
Q ss_pred CHHHHHHHHHHHH
Q 003691 683 SGADITEVCQRAC 695 (802)
Q Consensus 683 sg~di~~~~~~a~ 695 (802)
+.+++.+.++...
T Consensus 214 dlr~al~~LekL~ 226 (585)
T PRK14950 214 SMRDAENLLQQLA 226 (585)
T ss_pred CHHHHHHHHHHHH
Confidence 6777776666543
No 198
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.27 E-value=1.4e-10 Score=130.37 Aligned_cols=202 Identities=22% Similarity=0.289 Sum_probs=124.9
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEechhhh--
Q 003691 203 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIM-- 275 (802)
Q Consensus 203 ~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l-----~~~~v~v~~~~l~-- 275 (802)
.+.+.|.++++++|...+...+. -..+.+++|+||||||||++++.++..+ +..+++++|....
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~---------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR---------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 35688999999999887753221 1345679999999999999999999876 4567889885321
Q ss_pred --------hhccc--------hhHHHHHHHHHHHHh-cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCC
Q 003691 276 --------SKLAG--------ESESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR 338 (802)
Q Consensus 276 --------~~~~g--------~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~ 338 (802)
....+ .....+..+.+.... ..+.+|+|||+|.+....+ ...+..|+..++....
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~~~- 171 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEYPG- 171 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhccCC-
Confidence 11111 112233333433332 3467899999999972211 1234555555544332
Q ss_pred CcEEEEEecCCCC---CCCHHhhccCCc-ceEEEeCCCCHHHHHHHHHHHhccC---ccccchhhHHHHhhcCCCch--H
Q 003691 339 AHVIVMGATNRPN---SIDPALRRFGRF-DREIDIGVPDEVGRLEILRIHTKNM---KLAEDVDLERVAKDTHGYVG--S 409 (802)
Q Consensus 339 ~~vivI~~tn~~~---~ld~al~r~~rf-~~~i~i~~P~~~~R~~Il~~~~~~~---~l~~~~~l~~la~~t~g~~~--~ 409 (802)
.++.+|+++|..+ .+++.+.+ || ...+.+++++.++..+|++..++.. ...++..++.++..+.+..| +
T Consensus 172 ~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r 249 (394)
T PRK00411 172 ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDAR 249 (394)
T ss_pred CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHH
Confidence 3677788777653 46676665 34 3578999999999999998776432 12233345666666643222 2
Q ss_pred HHHHHHHHHHHHhH
Q 003691 410 DLAALCTEAALQCI 423 (802)
Q Consensus 410 dl~~l~~~A~~~~~ 423 (802)
.+..++..|...+.
T Consensus 250 ~a~~ll~~a~~~a~ 263 (394)
T PRK00411 250 VAIDLLRRAGLIAE 263 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 33355566555443
No 199
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.8e-11 Score=125.16 Aligned_cols=132 Identities=24% Similarity=0.401 Sum_probs=93.2
Q ss_pred ccccccchhhhhhhhhhcCcCCChhhhhh----ccCCC-CceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchh-hh
Q 003691 477 EDIGGLDNVKRELQETVQYPVEHPEKFEK----FGMSP-SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TM 550 (802)
Q Consensus 477 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~----~~~~~-~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~-~~ 550 (802)
+.+.|++..|+.|.-++-. |...+.. -.+.. ..+|||.||+|||||.||+.+|..++.||..-++..|. ..
T Consensus 61 ~YVIGQe~AKKvLsVAVYN---HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYN---HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred hheecchhhhceeeeeehh---HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 4578898888877544321 1111111 01222 23599999999999999999999999999988888776 57
Q ss_pred ccCccHHH-HHHHHHHHh----hCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhcc
Q 003691 551 WFGESEAN-VREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM 611 (802)
Q Consensus 551 ~vg~se~~-i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~ 611 (802)
|+|+.-.+ +-++.+.|. .....|++|||||.+..+....+-..+-....|.+.||..++|.
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 99998655 456666542 22335999999999987654433333344677999999999984
No 200
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=1.6e-10 Score=133.78 Aligned_cols=187 Identities=18% Similarity=0.267 Sum_probs=129.0
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 265 (802)
.++.+.+|++|.|++..++.|+..+..- .-+..+||+||+|+||||+|+++|+.+++.
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGE 75 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCC
Confidence 3567889999999999999998887641 124458999999999999999999988652
Q ss_pred --------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEecccccccCCCCCCchhHHHHHHHH
Q 003691 266 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 327 (802)
Q Consensus 266 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 327 (802)
++.+++.+ ...-..++.+.+.+. .....|+||||+|.|.. ...+.
T Consensus 76 C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NA 138 (647)
T PRK07994 76 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNA 138 (647)
T ss_pred CHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHH
Confidence 12222211 012234555555433 23456999999998842 34577
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCC
Q 003691 328 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 406 (802)
Q Consensus 328 Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 406 (802)
|++.|+... ..+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++-...|...++...+. ++..+..++..+.|-
T Consensus 139 LLKtLEEPp--~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs 213 (647)
T PRK07994 139 LLKTLEEPP--EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGS 213 (647)
T ss_pred HHHHHHcCC--CCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 888887643 356677778888899999887 64 778999999998888887766443332 334566777777775
Q ss_pred chHHHHHHHHH
Q 003691 407 VGSDLAALCTE 417 (802)
Q Consensus 407 ~~~dl~~l~~~ 417 (802)
.+. ...++..
T Consensus 214 ~R~-Al~lldq 223 (647)
T PRK07994 214 MRD-ALSLTDQ 223 (647)
T ss_pred HHH-HHHHHHH
Confidence 443 3334433
No 201
>PRK08727 hypothetical protein; Validated
Probab=99.25 E-value=1.2e-10 Score=120.40 Aligned_cols=158 Identities=21% Similarity=0.249 Sum_probs=99.5
Q ss_pred ceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCC
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 588 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~ 588 (802)
..++|+||+|||||+|+++++..+ +...+++...++. ..+..+++..... .+|+|||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~~~--dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALEGR--SLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHhcC--CEEEEeCcccccCCh--
Confidence 349999999999999999998775 3444555544432 2334455554433 599999999875321
Q ss_pred CCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCC---CccccCCCCc--ceEEEecCCCHHHHHHHHHHHhcc
Q 003691 589 STGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII---DPALLRPGRL--DQLIYIPLPDEASRLQIFKACLRK 663 (802)
Q Consensus 589 ~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allr~gRf--~~~i~~~~p~~~~r~~Il~~~l~~ 663 (802)
.. ...++..++.....+.-+|+.+.+.|..+ +|++.+ || ...+.+++|+.+++.+|++.++..
T Consensus 110 -------~~---~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 110 -------ED---EVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred -------HH---HHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 11 22333444433223333555555566654 789988 87 568899999999999999986654
Q ss_pred --CCCCCccCHHHHHHHccCCCHHHHHHHHHHHH
Q 003691 664 --SPISPDVDLSALARYTHGFSGADITEVCQRAC 695 (802)
Q Consensus 664 --~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~ 695 (802)
+.++.+ .+..|++...| +.+.+.++++...
T Consensus 178 ~~l~l~~e-~~~~La~~~~r-d~r~~l~~L~~l~ 209 (233)
T PRK08727 178 RGLALDEA-AIDWLLTHGER-ELAGLVALLDRLD 209 (233)
T ss_pred cCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 333332 36677776552 2333334455443
No 202
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.25 E-value=3.6e-11 Score=123.00 Aligned_cols=170 Identities=23% Similarity=0.378 Sum_probs=114.0
Q ss_pred ceeeeecCCCCchhHHHHHHHHHh-----CCeEEEEeCcchhhhccCccHH-HHHHHHHHHhhCCCeEEEEcccchhhhc
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEA-NVREIFDKARQSAPCVLFFDELDSIATQ 585 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~-----~~~~i~v~~~~l~~~~vg~se~-~i~~lf~~a~~~~p~il~iDEid~l~~~ 585 (802)
..++||||+|+|||+|.++++++. +...+++++.++...+...... .+..+.+.-+ ...+++||+++.+...
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc
Confidence 348999999999999999999875 4568899988887665432221 2223333333 3369999999998532
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCC---CccccCCCCcc--eEEEecCCCHHHHHHHHHHH
Q 003691 586 RGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEASRLQIFKAC 660 (802)
Q Consensus 586 r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allr~gRf~--~~i~~~~p~~~~r~~Il~~~ 660 (802)
......|+..++.+...++.+|+++...|..+ ++.+.+ ||. ..+.+.+|+.+.|.+|++..
T Consensus 113 ------------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 113 ------------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp ------------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHH
Confidence 34566777777776666777888887777655 566666 876 58899999999999999998
Q ss_pred hccCCCCCccC-HHHHHHHccCCCHHHHHHHHHHHHHHH
Q 003691 661 LRKSPISPDVD-LSALARYTHGFSGADITEVCQRACKYA 698 (802)
Q Consensus 661 l~~~~~~~~~~-~~~la~~t~g~sg~di~~~~~~a~~~a 698 (802)
+....+.-+.+ +..|++... -+.++|..++.+....+
T Consensus 179 a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 179 AKERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp HHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 87665543333 456666554 46788888887766544
No 203
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.24 E-value=1.1e-10 Score=127.00 Aligned_cols=184 Identities=21% Similarity=0.265 Sum_probs=119.6
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhC-----CeEEEEeCcch
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 547 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~-----~~~i~v~~~~l 547 (802)
+.+|+++.|.+++++.|...+... ...+++|+||||||||++++++++.+. .+++.++.++-
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 367889999999999888776431 122589999999999999999999873 34555554432
Q ss_pred hhhccCccHHHHHHHH-HHHhh-----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEE
Q 003691 548 LTMWFGESEANVREIF-DKARQ-----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIG 621 (802)
Q Consensus 548 ~~~~vg~se~~i~~lf-~~a~~-----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~ 621 (802)
.. ...++..+ +.++. ..+.++++||+|.+.. ...+.|+..++.... ...+|.
T Consensus 80 ~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--------------~~~~~L~~~le~~~~--~~~lIl 137 (319)
T PRK00440 80 RG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------------DAQQALRRTMEMYSQ--NTRFIL 137 (319)
T ss_pred cc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH--------------HHHHHHHHHHhcCCC--CCeEEE
Confidence 11 11122222 22221 2346999999998732 234566777765433 345555
Q ss_pred ecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHHH
Q 003691 622 ATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS-PDVDLSALARYTHGFSGADITEVCQRAC 695 (802)
Q Consensus 622 aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~t~g~sg~di~~~~~~a~ 695 (802)
++|.+..+.+++.+ |+. .+.|++|+.++...+++..+++..+. ++..+..+++.+.| +.+.+.+.++.+.
T Consensus 138 ~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~ 208 (319)
T PRK00440 138 SCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAA 208 (319)
T ss_pred EeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 67777777777776 876 68999999999999999988766543 22346677776543 3444444444433
No 204
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.24 E-value=3.9e-10 Score=125.17 Aligned_cols=216 Identities=26% Similarity=0.332 Sum_probs=134.0
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhh----CC-CCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hc
Q 003691 205 DVGGVRKQMAQIRELVELPLRHPQLFKSI----GV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS-KL 278 (802)
Q Consensus 205 ~i~G~~~~~~~l~~~v~~~l~~~~~~~~l----~i-~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~-~~ 278 (802)
.|.|++.+++.+...+.....+ +.... .+ .+..++||+||||||||++|++||..++.+++.+++..+.. .|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r--~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gy 149 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKR--LRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGY 149 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHh--hhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCc
Confidence 3899999999987666432111 11100 11 24578999999999999999999999999999999987653 46
Q ss_pred cchhH-HHHHHHHHH----HHhcCCeEEEecccccccCCCCCCch--h-HHHHHHHHHHHhhhccc-----------CCC
Q 003691 279 AGESE-SNLRKAFEE----AEKNAPSIIFIDELDSIAPKREKTHG--E-VERRIVSQLLTLMDGLK-----------SRA 339 (802)
Q Consensus 279 ~g~~~-~~l~~vf~~----a~~~~p~il~iDEid~l~~~~~~~~~--~-~~~~v~~~Ll~~ld~~~-----------~~~ 339 (802)
.|... ..+..+++. .....++|+||||+|.+..+...+.. + ....+...|+.+|++-. ...
T Consensus 150 vG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~ 229 (412)
T PRK05342 150 VGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQ 229 (412)
T ss_pred ccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCC
Confidence 66543 334444443 23346789999999999876432211 1 11346678888887531 011
Q ss_pred cEEEEEecCCCC-------C---------------------------------------------CCHHhhccCCcceEE
Q 003691 340 HVIVMGATNRPN-------S---------------------------------------------IDPALRRFGRFDREI 367 (802)
Q Consensus 340 ~vivI~~tn~~~-------~---------------------------------------------ld~al~r~~rf~~~i 367 (802)
..++|.|+|-.. . +.|.+ .+|++..+
T Consensus 230 ~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEf--lgRld~iv 307 (412)
T PRK05342 230 EFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEF--IGRLPVVA 307 (412)
T ss_pred CeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHH--hCCCCeee
Confidence 345555554310 0 11222 36888999
Q ss_pred EeCCCCHHHHHHHHHH----Hhcc---------Cccc-cchhhHHHHhh--cCCCchHHHHHHHHHHHHHhHH
Q 003691 368 DIGVPDEVGRLEILRI----HTKN---------MKLA-EDVDLERVAKD--THGYVGSDLAALCTEAALQCIR 424 (802)
Q Consensus 368 ~i~~P~~~~R~~Il~~----~~~~---------~~l~-~~~~l~~la~~--t~g~~~~dl~~l~~~A~~~~~~ 424 (802)
.+...+.+...+|+.. ..++ +.+. ++.-+..+++. ...+-.+.+..++.......+.
T Consensus 308 ~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~ 380 (412)
T PRK05342 308 TLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMF 380 (412)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHH
Confidence 9999999999988862 2221 1121 23345666664 3456666777776665554443
No 205
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.24 E-value=5.4e-11 Score=126.22 Aligned_cols=140 Identities=19% Similarity=0.203 Sum_probs=99.9
Q ss_pred cCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhh--ccCccHHH----------HHHHHHHHhhCCCeEE
Q 003691 507 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM--WFGESEAN----------VREIFDKARQSAPCVL 574 (802)
Q Consensus 507 ~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~--~vg~se~~----------i~~lf~~a~~~~p~il 574 (802)
++...++++|.||||||||++++.+|..++.+++.|++...++. ++|...-. ....+-.|.. .++++
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~il 138 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVAL 138 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEE
Confidence 33456679999999999999999999999999999987666544 45542111 1112333433 34789
Q ss_pred EEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhc------------cCCCCcEEEEEecCCCC------------CCC
Q 003691 575 FFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDG------------MNAKKTVFIIGATNRPD------------IID 630 (802)
Q Consensus 575 ~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~------------~~~~~~v~vi~aTn~~~------------~ld 630 (802)
++||||..- ..+++.|...|+. +..+..+.||||+|..+ .++
T Consensus 139 llDEin~a~--------------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~ 204 (327)
T TIGR01650 139 CFDEYDAGR--------------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQIN 204 (327)
T ss_pred EechhhccC--------------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCC
Confidence 999999862 2334444444431 11334688999999865 368
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHhcc
Q 003691 631 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRK 663 (802)
Q Consensus 631 ~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (802)
+|++. ||-.++.+++|+.++-.+|+......
T Consensus 205 ~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 205 QAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred HHHHh--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 89998 99988899999999999999876544
No 206
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=4.2e-10 Score=131.24 Aligned_cols=187 Identities=18% Similarity=0.285 Sum_probs=133.9
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhC----------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------------- 536 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~---------------- 536 (802)
+.+|++|.|++.+++.|...+.. -..+..+|||||+|+|||++|+++|..+.
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 46899999999999999887653 13456699999999999999999999874
Q ss_pred ---------CeEEEEeCcchhhhccCccHHHHHHHHHHHhhC----CCeEEEEcccchhhhccCCCCCCCCCchHHHHHH
Q 003691 537 ---------ANFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQ 603 (802)
Q Consensus 537 ---------~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~ 603 (802)
.+++.+++.+. .+...++.+...+... ...|++|||+|.+- ....+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------~~a~na 140 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------QAAFNA 140 (614)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------------HHHHHH
Confidence 23344443211 1234567766655432 34699999999873 245788
Q ss_pred HHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcc-CHHHHHHHccCC
Q 003691 604 LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV-DLSALARYTHGF 682 (802)
Q Consensus 604 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la~~t~g~ 682 (802)
||..|+.. ....++|.+|+.+..|-+.+++ |+. .+.|.+++.++....++..+++..+.-+. .+..|++.+. .
T Consensus 141 LLK~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~-g 214 (614)
T PRK14971 141 FLKTLEEP--PSYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKAD-G 214 (614)
T ss_pred HHHHHhCC--CCCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 99999864 3455666666677888889887 886 79999999999999998888776655332 3677777664 4
Q ss_pred CHHHHHHHHHHHHHH
Q 003691 683 SGADITEVCQRACKY 697 (802)
Q Consensus 683 sg~di~~~~~~a~~~ 697 (802)
+-+++.+++..+..+
T Consensus 215 dlr~al~~Lekl~~y 229 (614)
T PRK14971 215 GMRDALSIFDQVVSF 229 (614)
T ss_pred CHHHHHHHHHHHHHh
Confidence 566666666555444
No 207
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=3.2e-10 Score=128.67 Aligned_cols=195 Identities=21% Similarity=0.264 Sum_probs=132.5
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEE-------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFL------- 268 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~------- 268 (802)
.++.+-+|+++.|++..++.|+..+.. -..+..+||+||+||||||+|+++|+.++.....
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~ 80 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK 80 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC
Confidence 356788999999999999998877653 1235689999999999999999999988642110
Q ss_pred -----Eechhhhhh----------ccchhHHHHHHHHHHHHhc----CCeEEEecccccccCCCCCCchhHHHHHHHHHH
Q 003691 269 -----INGPEIMSK----------LAGESESNLRKAFEEAEKN----APSIIFIDELDSIAPKREKTHGEVERRIVSQLL 329 (802)
Q Consensus 269 -----v~~~~l~~~----------~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 329 (802)
-+|..+... ........++.+++.+... ...++||||+|.+.. ...+.|+
T Consensus 81 ~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~naLL 149 (507)
T PRK06645 81 TCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFNALL 149 (507)
T ss_pred CCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHHHHH
Confidence 111111110 0112345677777776532 346999999998742 2346677
Q ss_pred HhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCCch
Q 003691 330 TLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVG 408 (802)
Q Consensus 330 ~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 408 (802)
..++.. ...+++|.+|+.++.+.+.+++ |+ ..+++..++..+...+++..++...+. ++..+..++..+.|. .
T Consensus 150 k~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~Gs-l 223 (507)
T PRK06645 150 KTLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGS-A 223 (507)
T ss_pred HHHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 777753 3456666677788889888887 65 568899999999999998777654432 334567788877774 4
Q ss_pred HHHHHHHHHHH
Q 003691 409 SDLAALCTEAA 419 (802)
Q Consensus 409 ~dl~~l~~~A~ 419 (802)
+++..++..+.
T Consensus 224 R~al~~Ldkai 234 (507)
T PRK06645 224 RDAVSILDQAA 234 (507)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 208
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.24 E-value=1.3e-10 Score=126.45 Aligned_cols=159 Identities=25% Similarity=0.397 Sum_probs=111.8
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM 275 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~ 275 (802)
+++.+.+++++.|.+...+.++.++.. + ..+..+||+||||+|||++++++++.++..++.+++.+
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-- 78 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-- 78 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--
Confidence 467788999999999999999888752 1 22456777999999999999999999988888888865
Q ss_pred hhccchhHHHHHHHHHHH-HhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCC
Q 003691 276 SKLAGESESNLRKAFEEA-EKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID 354 (802)
Q Consensus 276 ~~~~g~~~~~l~~vf~~a-~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld 354 (802)
.. .......+....... ....+.+++|||+|.+... .....|...++.... .+.+|.++|.+..+.
T Consensus 79 ~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----------~~~~~L~~~le~~~~--~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 79 CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----------DAQRHLRSFMEAYSK--NCSFIITANNKNGII 145 (316)
T ss_pred cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----------HHHHHHHHHHHhcCC--CceEEEEcCChhhch
Confidence 11 111112222211111 1135689999999977221 122345555665433 456677889888999
Q ss_pred HHhhccCCcceEEEeCCCCHHHHHHHHHHH
Q 003691 355 PALRRFGRFDREIDIGVPDEVGRLEILRIH 384 (802)
Q Consensus 355 ~al~r~~rf~~~i~i~~P~~~~R~~Il~~~ 384 (802)
+++++ |+ ..+.++.|+..++..++...
T Consensus 146 ~~l~s--R~-~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 146 EPLRS--RC-RVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred HHHHh--hc-eEEEeCCCCHHHHHHHHHHH
Confidence 99998 77 46889999999998887654
No 209
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.23 E-value=2.3e-10 Score=118.77 Aligned_cols=191 Identities=26% Similarity=0.412 Sum_probs=122.9
Q ss_pred cccCCCCcccccChHHHHHH---HHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc---EEEE
Q 003691 196 ERLNEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---FFLI 269 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~---l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---~v~v 269 (802)
++..+-+++|.+|+++.+.+ |+.+++. ..-..++|+||||||||||||.|+.-...+ |+.+
T Consensus 130 ermRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfvel 196 (554)
T KOG2028|consen 130 ERMRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVEL 196 (554)
T ss_pred hhcCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEE
Confidence 35567788899998887644 4444443 234579999999999999999999887655 6666
Q ss_pred echhhhhhccchhHHHHHHHHHHHHh-----cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEE
Q 003691 270 NGPEIMSKLAGESESNLRKAFEEAEK-----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVM 344 (802)
Q Consensus 270 ~~~~l~~~~~g~~~~~l~~vf~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI 344 (802)
+... ..-+.+|.+|+.+.. ....|||||||+.+....+ ..++-. -.++.|++|
T Consensus 197 SAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-----------D~fLP~----VE~G~I~lI 254 (554)
T KOG2028|consen 197 SATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-----------DTFLPH----VENGDITLI 254 (554)
T ss_pred eccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh-----------hcccce----eccCceEEE
Confidence 5422 234568888988765 3568999999998754332 112222 235678888
Q ss_pred EecC--CCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhc----------cCcc----ccchhhHHHHhhcCCCch
Q 003691 345 GATN--RPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTK----------NMKL----AEDVDLERVAKDTHGYVG 408 (802)
Q Consensus 345 ~~tn--~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~----------~~~l----~~~~~l~~la~~t~g~~~ 408 (802)
|+|. +--.+..+|.+ |+ +.+.+.....+.-..||..-.. .++. .++.-++.++..+.|-..
T Consensus 255 GATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 7663 33466778877 43 4566777777777777764211 1221 123446788888888776
Q ss_pred HHHHHHHHHHHHHhHH
Q 003691 409 SDLAALCTEAALQCIR 424 (802)
Q Consensus 409 ~dl~~l~~~A~~~~~~ 424 (802)
..+..|--.+.+.+.+
T Consensus 332 ~aLN~Lems~~m~~tr 347 (554)
T KOG2028|consen 332 AALNALEMSLSMFCTR 347 (554)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666554444444433
No 210
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.23 E-value=4.8e-11 Score=129.53 Aligned_cols=176 Identities=28% Similarity=0.439 Sum_probs=122.7
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCC-CCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hccc-h
Q 003691 205 DVGGVRKQMAQIRELVELPLRHPQLFKSIGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS-KLAG-E 281 (802)
Q Consensus 205 ~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i-~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~-~~~g-~ 281 (802)
.|.|++++++.+..++....++..+...+.. ..+.++||+||||||||++|++||+.++.+++.+++..+.. .|.| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3899999999998777542222211111111 13588999999999999999999999999999999877764 4666 3
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 003691 282 SESNLRKAFEEAE------------------------------------------------------------------- 294 (802)
Q Consensus 282 ~~~~l~~vf~~a~------------------------------------------------------------------- 294 (802)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4455555554440
Q ss_pred -----------------------------------------------------------------------hcCCeEEEe
Q 003691 295 -----------------------------------------------------------------------KNAPSIIFI 303 (802)
Q Consensus 295 -----------------------------------------------------------------------~~~p~il~i 303 (802)
...-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred cccccccCCCCCCchhHH-HHHHHHHHHhhhccc--------CCCcEEEEEec----CCCCCCCHHhhccCCcceEEEeC
Q 003691 304 DELDSIAPKREKTHGEVE-RRIVSQLLTLMDGLK--------SRAHVIVMGAT----NRPNSIDPALRRFGRFDREIDIG 370 (802)
Q Consensus 304 DEid~l~~~~~~~~~~~~-~~v~~~Ll~~ld~~~--------~~~~vivI~~t----n~~~~ld~al~r~~rf~~~i~i~ 370 (802)
||||.|+.+.+....++. .-+...|+.++++-. ...++++|++- ..|.++-|.|. |||...+.+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECC
Confidence 999999977543222332 346677888888732 22456666432 34666777776 4999999999
Q ss_pred CCCHHHHHHHHH
Q 003691 371 VPDEVGRLEILR 382 (802)
Q Consensus 371 ~P~~~~R~~Il~ 382 (802)
.++.+...+||.
T Consensus 334 ~L~~~dL~~ILt 345 (443)
T PRK05201 334 ALTEEDFVRILT 345 (443)
T ss_pred CCCHHHHHHHhc
Confidence 999999999984
No 211
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.23 E-value=5.9e-11 Score=128.77 Aligned_cols=176 Identities=28% Similarity=0.439 Sum_probs=122.2
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhC-CCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hccc-h
Q 003691 205 DVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS-KLAG-E 281 (802)
Q Consensus 205 ~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~-i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~-~~~g-~ 281 (802)
.|.|++++++.+..++....++..+...+. -.++.+|||+||||||||+++++||+.++.+++.+++..+.. .|.| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999999777664333222211111 235689999999999999999999999999999999876653 4555 4
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 003691 282 SESNLRKAFEEA-------------------------------------------------------------------- 293 (802)
Q Consensus 282 ~~~~l~~vf~~a-------------------------------------------------------------------- 293 (802)
.+..++.+|+.+
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 445555554443
Q ss_pred ---------------------------------------------------------------------H--hcCCeEEE
Q 003691 294 ---------------------------------------------------------------------E--KNAPSIIF 302 (802)
Q Consensus 294 ---------------------------------------------------------------------~--~~~p~il~ 302 (802)
. ..+..|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 0 12346999
Q ss_pred ecccccccCCCCCCchhHH-HHHHHHHHHhhhcccC--------CCcEEEEEec----CCCCCCCHHhhccCCcceEEEe
Q 003691 303 IDELDSIAPKREKTHGEVE-RRIVSQLLTLMDGLKS--------RAHVIVMGAT----NRPNSIDPALRRFGRFDREIDI 369 (802)
Q Consensus 303 iDEid~l~~~~~~~~~~~~-~~v~~~Ll~~ld~~~~--------~~~vivI~~t----n~~~~ld~al~r~~rf~~~i~i 369 (802)
|||||.++.+......++. .-+...|+.++++-.- ..++++|++- ..|.++-|.+. |||...+.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 9999999976532222222 3466778888887322 2456666432 24666767776 599999999
Q ss_pred CCCCHHHHHHHHH
Q 003691 370 GVPDEVGRLEILR 382 (802)
Q Consensus 370 ~~P~~~~R~~Il~ 382 (802)
..++.++...||.
T Consensus 331 ~~L~~edL~rILt 343 (441)
T TIGR00390 331 QALTTDDFERILT 343 (441)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999999984
No 212
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.23 E-value=4.3e-10 Score=116.09 Aligned_cols=186 Identities=18% Similarity=0.278 Sum_probs=113.1
Q ss_pred CCcccc--cChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhh
Q 003691 201 VGYDDV--GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIM 275 (802)
Q Consensus 201 ~~~~~i--~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~ 275 (802)
.+|++. ++.+..++.+++++.. ..+.+++|+||+|||||+++++++... +..++++++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 344444 4667777888776531 346789999999999999999999876 4567889988775
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCC-
Q 003691 276 SKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID- 354 (802)
Q Consensus 276 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld- 354 (802)
... ..++... ....+|+|||++.+..... ....|..+++........+|++++..+..++
T Consensus 79 ~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~~---------~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~ 139 (226)
T TIGR03420 79 QAD--------PEVLEGL--EQADLVCLDDVEAIAGQPE---------WQEALFHLYNRVREAGGRLLIAGRAAPAQLPL 139 (226)
T ss_pred HhH--------HHHHhhc--ccCCEEEEeChhhhcCChH---------HHHHHHHHHHHHHHcCCeEEEECCCChHHCCc
Confidence 322 2223222 2345999999998753210 1233444444433333345554444444332
Q ss_pred --HHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCCchHHHHHHHHHHH
Q 003691 355 --PALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLAALCTEAA 419 (802)
Q Consensus 355 --~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~A~ 419 (802)
+.+.+...+...+.++.|+..++..+++....+..+. ++..+..++....| ...++..+++.+.
T Consensus 140 ~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~ 206 (226)
T TIGR03420 140 RLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALD 206 (226)
T ss_pred ccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 5666522235788999999999999998765433322 23345666664333 3455555555544
No 213
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=1.8e-10 Score=131.59 Aligned_cols=188 Identities=17% Similarity=0.231 Sum_probs=126.5
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 265 (802)
.++.+-+|++|.|++..++.|+.++... ..+..+||+||+|+||||+|+++|+.+++.
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 75 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCND 75 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCC
Confidence 4678889999999999999999888531 224568999999999999999999988642
Q ss_pred --------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEecccccccCCCCCCchhHHHHHHHH
Q 003691 266 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 327 (802)
Q Consensus 266 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 327 (802)
++.+++.+ ...-..++.+.+.+. .....|+||||+|.+.. ...+.
T Consensus 76 C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-----------~a~na 138 (509)
T PRK14958 76 CENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-----------HSFNA 138 (509)
T ss_pred CHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----------HHHHH
Confidence 23333221 122334566665543 22346999999998852 23567
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCC
Q 003691 328 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 406 (802)
Q Consensus 328 Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 406 (802)
|+..|+.... .+.+|.+|+++..+.+.+++ |+ ..+++..++..+-...++..++...+. ++..+..++..+.|
T Consensus 139 LLk~LEepp~--~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G- 212 (509)
T PRK14958 139 LLKTLEEPPS--HVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG- 212 (509)
T ss_pred HHHHHhccCC--CeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8888876533 46666677788888888776 54 456788888777766666555544332 33346677777665
Q ss_pred chHHHHHHHHHH
Q 003691 407 VGSDLAALCTEA 418 (802)
Q Consensus 407 ~~~dl~~l~~~A 418 (802)
...++..++..+
T Consensus 213 slR~al~lLdq~ 224 (509)
T PRK14958 213 SVRDALSLLDQS 224 (509)
T ss_pred cHHHHHHHHHHH
Confidence 345555555444
No 214
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.22 E-value=5.9e-10 Score=122.39 Aligned_cols=181 Identities=22% Similarity=0.313 Sum_probs=118.4
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC-----CcEEEEe
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFLIN 270 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~-----~~~v~v~ 270 (802)
+++.+.+|+++.|.+..++.+..++.. ....+++|+||||||||++|+++++.+. ..++.++
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~ 73 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN 73 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec
Confidence 356788899999999999999888753 1123799999999999999999999874 2457788
Q ss_pred chhhhhhcc-------------ch-------hHHHHHHHHHHHHhc-----CCeEEEecccccccCCCCCCchhHHHHHH
Q 003691 271 GPEIMSKLA-------------GE-------SESNLRKAFEEAEKN-----APSIIFIDELDSIAPKREKTHGEVERRIV 325 (802)
Q Consensus 271 ~~~l~~~~~-------------g~-------~~~~l~~vf~~a~~~-----~p~il~iDEid~l~~~~~~~~~~~~~~v~ 325 (802)
+.++..... +. ....++.+.+..... .+.++++||++.+.. ...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-----------~~~ 142 (337)
T PRK12402 74 VADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-----------DAQ 142 (337)
T ss_pred hhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-----------HHH
Confidence 766542210 00 112334444333332 246999999997732 123
Q ss_pred HHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcC
Q 003691 326 SQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTH 404 (802)
Q Consensus 326 ~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~ 404 (802)
..|...++...... .+|.+++.+..+.+.+++ |+ ..+.+.+|+..+...+++..+++..+. ++..+..++..+.
T Consensus 143 ~~L~~~le~~~~~~--~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~ 217 (337)
T PRK12402 143 QALRRIMEQYSRTC--RFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG 217 (337)
T ss_pred HHHHHHHHhccCCC--eEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 45666666544332 333455555667777776 54 568899999999999998776554432 3445667776664
Q ss_pred C
Q 003691 405 G 405 (802)
Q Consensus 405 g 405 (802)
|
T Consensus 218 g 218 (337)
T PRK12402 218 G 218 (337)
T ss_pred C
Confidence 3
No 215
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=3.1e-10 Score=127.71 Aligned_cols=188 Identities=21% Similarity=0.268 Sum_probs=130.2
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCC------------
Q 003691 197 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 264 (802)
Q Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~------------ 264 (802)
++.+.+|+++.|++..++.|+.++..- ..+..+||+||+|+||||+|+++|+.+.+
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 567889999999999999998777531 23568999999999999999999987632
Q ss_pred ------------cEEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHHH
Q 003691 265 ------------FFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQL 328 (802)
Q Consensus 265 ------------~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 328 (802)
.++.+++.+ ...-..++.+.+.+.. ....+++|||+|.+.. ...+.|
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaL 136 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNAL 136 (491)
T ss_pred HHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHH
Confidence 224444321 1223456777766542 2346999999988742 245678
Q ss_pred HHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCCc
Q 003691 329 LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 407 (802)
Q Consensus 329 l~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 407 (802)
+..++.... .+.+|.+|+.++.+.+.+++ |+ ..+++..++..+....+...+....+. ++..+..++..+.| .
T Consensus 137 LK~LEePp~--~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-s 210 (491)
T PRK14964 137 LKTLEEPAP--HVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-S 210 (491)
T ss_pred HHHHhCCCC--CeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 888876433 56666677778888888887 55 557899999988888888766544432 33456777777765 3
Q ss_pred hHHHHHHHHHHH
Q 003691 408 GSDLAALCTEAA 419 (802)
Q Consensus 408 ~~dl~~l~~~A~ 419 (802)
..++..++..+.
T Consensus 211 lR~alslLdqli 222 (491)
T PRK14964 211 MRNALFLLEQAA 222 (491)
T ss_pred HHHHHHHHHHHH
Confidence 445555554443
No 216
>PRK06620 hypothetical protein; Validated
Probab=99.22 E-value=1.2e-10 Score=118.58 Aligned_cols=143 Identities=20% Similarity=0.274 Sum_probs=95.8
Q ss_pred ceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCC
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTG 591 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~ 591 (802)
..++||||||||||+|+++++...+..++. .... . ...+ . ...++++||||.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-------~----~~~~----~-~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-------N----EEIL----E-KYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-------c----hhHH----h-cCCEEEEeccccch--------
Confidence 569999999999999999999887653322 1000 0 0111 1 22599999999541
Q ss_pred CCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCC--CCccccCCCCcc--eEEEecCCCHHHHHHHHHHHhccCC--
Q 003691 592 DAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI--IDPALLRPGRLD--QLIYIPLPDEASRLQIFKACLRKSP-- 665 (802)
Q Consensus 592 ~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~--ld~allr~gRf~--~~i~~~~p~~~~r~~Il~~~l~~~~-- 665 (802)
.. .|...++.+...++.+||+++..|.. + |++.+ |+. .++.+.+|+.+.+..+++..+....
T Consensus 99 ------~~---~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~ 166 (214)
T PRK06620 99 ------EP---ALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVT 166 (214)
T ss_pred ------HH---HHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 11 34444444444567788888877765 5 77776 886 4789999999999999998876543
Q ss_pred CCCccCHHHHHHHccCCCHHHHHHHHHHH
Q 003691 666 ISPDVDLSALARYTHGFSGADITEVCQRA 694 (802)
Q Consensus 666 ~~~~~~~~~la~~t~g~sg~di~~~~~~a 694 (802)
++++ -++.|++... -+.+.+.+++...
T Consensus 167 l~~e-v~~~L~~~~~-~d~r~l~~~l~~l 193 (214)
T PRK06620 167 ISRQ-IIDFLLVNLP-REYSKIIEILENI 193 (214)
T ss_pred CCHH-HHHHHHHHcc-CCHHHHHHHHHHH
Confidence 4333 2667777664 3566666666653
No 217
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=5.5e-10 Score=127.30 Aligned_cols=178 Identities=21% Similarity=0.284 Sum_probs=123.0
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 265 (802)
.++.+.+|++|.|++..++.|+.++... ..+..+||+|||||||||+|+++|+.+...
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 4678899999999999999998888641 234557999999999999999999987431
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEecccccccCCCCCCchhHHHHHHHHH
Q 003691 266 -------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQL 328 (802)
Q Consensus 266 -------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 328 (802)
++.+++.. ......++.+...+. ...+.++||||+|.+. ....+.|
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naL 136 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNAL 136 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHH
Confidence 23333321 112334555544432 2346799999998663 2335667
Q ss_pred HHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCCc
Q 003691 329 LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 407 (802)
Q Consensus 329 l~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 407 (802)
+..++... ..+++|.+++.+..+.+.+++ |+ ..+.+..|+..+....++..++...+. ++..+..++..+.|-.
T Consensus 137 Lk~LEep~--~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gdl 211 (504)
T PRK14963 137 LKTLEEPP--EHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAM 211 (504)
T ss_pred HHHHHhCC--CCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 77776532 356666677888889998887 55 468999999999888888776554432 3345677777777643
No 218
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=3.5e-10 Score=130.18 Aligned_cols=195 Identities=19% Similarity=0.231 Sum_probs=129.3
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEE--E----
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFL--I---- 269 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~--v---- 269 (802)
.++.+.+|++|.|++..++.|+.++... ..+..+||+||+|+||||+|+++|+.+.+.... .
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 4577889999999999999999888641 235679999999999999999999987542100 0
Q ss_pred --echhhhh----------hccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhh
Q 003691 270 --NGPEIMS----------KLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD 333 (802)
Q Consensus 270 --~~~~l~~----------~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 333 (802)
.|..+.. .........++.++..+.. ....|+||||+|.+. ....+.|+..|+
T Consensus 76 C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-----------~~A~NALLKtLE 144 (709)
T PRK08691 76 CQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-----------KSAFNAMLKTLE 144 (709)
T ss_pred cHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----------HHHHHHHHHHHH
Confidence 0111100 0111223456677665432 334699999998763 224567888887
Q ss_pred cccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCCchHHHH
Q 003691 334 GLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYVGSDLA 412 (802)
Q Consensus 334 ~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~ 412 (802)
... ..+.+|.+|+.+..+.+.+++ |+ ..+.|..++..+-...|...++...+. ++..+..|+....|- .+++.
T Consensus 145 EPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~Gs-lRdAl 218 (709)
T PRK08691 145 EPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGS-MRDAL 218 (709)
T ss_pred hCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCC-HHHHH
Confidence 643 345666677888888888775 65 557788899988888887766654432 333467777777653 45555
Q ss_pred HHHHHHH
Q 003691 413 ALCTEAA 419 (802)
Q Consensus 413 ~l~~~A~ 419 (802)
.++..+.
T Consensus 219 nLLDqai 225 (709)
T PRK08691 219 SLLDQAI 225 (709)
T ss_pred HHHHHHH
Confidence 5555443
No 219
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.20 E-value=4.2e-10 Score=129.80 Aligned_cols=181 Identities=19% Similarity=0.311 Sum_probs=116.9
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC----------CcEEEEechh
Q 003691 204 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFLINGPE 273 (802)
Q Consensus 204 ~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~----------~~~v~v~~~~ 273 (802)
+.|.|.++++++|..++.-.+. +-.++..++|+|+||||||++++.+..++. ..+++|||..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 5688999999999888864222 112334467999999999999999987651 4568999954
Q ss_pred hhhh----------c------cc-hhHHHHHHHHHHHHh--cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhc
Q 003691 274 IMSK----------L------AG-ESESNLRKAFEEAEK--NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDG 334 (802)
Q Consensus 274 l~~~----------~------~g-~~~~~l~~vf~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 334 (802)
+... . .+ .....+..+|..... ....||+|||||.|.... ..++..|..+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~--------QDVLYnLFR~~~- 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT--------QKVLFTLFDWPT- 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH--------HHHHHHHHHHhh-
Confidence 3211 0 01 123345566665422 335699999999997542 223334444332
Q ss_pred ccCCCcEEEEEecCC---CCCCCHHhhccCCcc-eEEEeCCCCHHHHHHHHHHHhccC-ccccchhhHHHHhhcC
Q 003691 335 LKSRAHVIVMGATNR---PNSIDPALRRFGRFD-REIDIGVPDEVGRLEILRIHTKNM-KLAEDVDLERVAKDTH 404 (802)
Q Consensus 335 ~~~~~~vivI~~tn~---~~~ld~al~r~~rf~-~~i~i~~P~~~~R~~Il~~~~~~~-~l~~~~~l~~la~~t~ 404 (802)
.....+++||++|. ++.+++.+++ ||. .++.|++++.++..+||+..+... .+.++..+..+|+...
T Consensus 898 -~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 898 -KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred -ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 13457899999986 4566777776 443 347899999999999999877643 2223334555555333
No 220
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.20 E-value=1.4e-10 Score=110.16 Aligned_cols=122 Identities=46% Similarity=0.693 Sum_probs=84.9
Q ss_pred CCceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhhccCccHHH---HHHHHHHHhhCCCeEEEEcccchhh
Q 003691 510 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEAN---VREIFDKARQSAPCVLFFDELDSIA 583 (802)
Q Consensus 510 ~~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~vg~se~~---i~~lf~~a~~~~p~il~iDEid~l~ 583 (802)
...+++++||||||||++++.++..+ +.+++.+++.+....+....... ....+.......+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 34579999999999999999999998 78888888877655432221111 1222333445567899999999872
Q ss_pred hccCCCCCCCCCchHHHHHHHHHHhhccCC----CCcEEEEEecCCCC--CCCccccCCCCcceEEEecC
Q 003691 584 TQRGSSTGDAGGAADRVLNQLLTEMDGMNA----KKTVFIIGATNRPD--IIDPALLRPGRLDQLIYIPL 647 (802)
Q Consensus 584 ~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~----~~~v~vi~aTn~~~--~ld~allr~gRf~~~i~~~~ 647 (802)
. .....++..+..... ..++.+|++||... .+++.+.+ ||+..+++++
T Consensus 98 ~--------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 98 R--------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred H--------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 1 223445555554432 36788999999887 67777776 9998888764
No 221
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.20 E-value=2.1e-10 Score=130.55 Aligned_cols=156 Identities=23% Similarity=0.404 Sum_probs=104.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCC
Q 003691 239 KGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKR 313 (802)
Q Consensus 239 ~~vLL~GppGtGKTtLar~la~~l-----~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 313 (802)
..++||||+|||||+|+++++.++ +..++++++.++...+..........-|.... ..+++|+|||++.+..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCCH
Confidence 569999999999999999999987 45578899888765443332211112222222 247799999999986442
Q ss_pred CCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCC---CCHHhhccCCcc--eEEEeCCCCHHHHHHHHHHHhccC
Q 003691 314 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEILRIHTKNM 388 (802)
Q Consensus 314 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~---ld~al~r~~rf~--~~i~i~~P~~~~R~~Il~~~~~~~ 388 (802)
. ....|+..++.+......+++++...|.. +++.+++ ||. ..+++..|+.+.|..|++..+...
T Consensus 228 ~---------~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~ 296 (450)
T PRK00149 228 R---------TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEE 296 (450)
T ss_pred H---------HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHc
Confidence 1 22345555555444445566666666655 5677776 664 578999999999999999877643
Q ss_pred ccc-cchhhHHHHhhcCCC
Q 003691 389 KLA-EDVDLERVAKDTHGY 406 (802)
Q Consensus 389 ~l~-~~~~l~~la~~t~g~ 406 (802)
.+. ++..++.++....|-
T Consensus 297 ~~~l~~e~l~~ia~~~~~~ 315 (450)
T PRK00149 297 GIDLPDEVLEFIAKNITSN 315 (450)
T ss_pred CCCCCHHHHHHHHcCcCCC
Confidence 321 334477888777654
No 222
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.20 E-value=2.4e-10 Score=116.94 Aligned_cols=179 Identities=20% Similarity=0.270 Sum_probs=118.3
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc------EEEE
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------FFLI 269 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~------~v~v 269 (802)
+++.+-+|+++.|++.+++.|...+.- .-..++|||||||||||+.++++|.++..+ +...
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 467788999999999999999887753 224589999999999999999999998652 2334
Q ss_pred echhhhhhccchhHHHHHHHHHHHHh---------cCC-eEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCC
Q 003691 270 NGPEIMSKLAGESESNLRKAFEEAEK---------NAP-SIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA 339 (802)
Q Consensus 270 ~~~~l~~~~~g~~~~~l~~vf~~a~~---------~~p-~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 339 (802)
|.++..+.... ..++. -|..... +.| -|+++||+|.+.. .....|...|+....
T Consensus 95 naSderGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts-----------daq~aLrr~mE~~s~-- 158 (346)
T KOG0989|consen 95 NASDERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS-----------DAQAALRRTMEDFSR-- 158 (346)
T ss_pred cccccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhH-----------HHHHHHHHHHhcccc--
Confidence 44443322211 11111 1111111 112 6999999998853 345678888887544
Q ss_pred cEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCC
Q 003691 340 HVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 406 (802)
Q Consensus 340 ~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 406 (802)
.+.++..||+.+.|...+.+ |.. .+.|+....+.....|+..+..-.+. ++..+..++....|-
T Consensus 159 ~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGD 223 (346)
T ss_pred ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Confidence 45666679999999887776 553 35667766766667777665544443 233467777777664
No 223
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=5.7e-10 Score=128.50 Aligned_cols=187 Identities=17% Similarity=0.236 Sum_probs=124.4
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 265 (802)
.++.+.+|++|.|++..++.|+.++... ..+..+||+||+||||||+|+++|+.+.+.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 4567889999999999999999888641 224458999999999999999999987631
Q ss_pred ----------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEecccccccCCCCCCchhHHHHHH
Q 003691 266 ----------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIV 325 (802)
Q Consensus 266 ----------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 325 (802)
++.+++.. ...-..++.+.+.+. .....|+||||+|.+.. ...
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~ 135 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGF 135 (584)
T ss_pred cHHHHHhhcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHH
Confidence 12222211 011234444444332 23446999999998842 245
Q ss_pred HHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcC
Q 003691 326 SQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTH 404 (802)
Q Consensus 326 ~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~ 404 (802)
+.|+..|+... ..+++|.+|+.++.+.+.+++ |. ..++|..++..+..+.+...++...+. ++..+..++....
T Consensus 136 NALLK~LEEpp--~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~ 210 (584)
T PRK14952 136 NALLKIVEEPP--EHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG 210 (584)
T ss_pred HHHHHHHhcCC--CCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 67888887643 366777777888899999887 53 578899998888888887766654432 2334455555554
Q ss_pred CCchHHHHHHHHH
Q 003691 405 GYVGSDLAALCTE 417 (802)
Q Consensus 405 g~~~~dl~~l~~~ 417 (802)
| ..+++..++..
T Consensus 211 G-dlR~aln~Ldq 222 (584)
T PRK14952 211 G-SPRDTLSVLDQ 222 (584)
T ss_pred C-CHHHHHHHHHH
Confidence 4 33444444443
No 224
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=4e-10 Score=134.60 Aligned_cols=176 Identities=20% Similarity=0.233 Sum_probs=120.5
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 265 (802)
.++.+.+|++|.|++..++.|+.++... ..+..+||+||+||||||++++||+.+.+.
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 4678889999999999999998887631 123458999999999999999999998642
Q ss_pred ----------------EEEEechhhhhhccchhHHHHHHHHHHH----HhcCCeEEEecccccccCCCCCCchhHHHHHH
Q 003691 266 ----------------FFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTHGEVERRIV 325 (802)
Q Consensus 266 ----------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 325 (802)
++.+++... ..-..++.+.+.+ ......|+||||+|.|.. ...
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~ 137 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGF 137 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHH
Confidence 122222110 1123344443332 234456999999998852 345
Q ss_pred HHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcC
Q 003691 326 SQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTH 404 (802)
Q Consensus 326 ~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~ 404 (802)
+.|++.|+.... .+++|.+|+.++.|.+.+++ |+ ..+.|..+..+....+|...++...+. ++..+..++....
T Consensus 138 NaLLK~LEEpP~--~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sg 212 (824)
T PRK07764 138 NALLKIVEEPPE--HLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGG 212 (824)
T ss_pred HHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 678888886544 56666667778888888887 54 568899898888888887776544443 2334556666665
Q ss_pred C
Q 003691 405 G 405 (802)
Q Consensus 405 g 405 (802)
|
T Consensus 213 G 213 (824)
T PRK07764 213 G 213 (824)
T ss_pred C
Confidence 5
No 225
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.20 E-value=1e-10 Score=125.99 Aligned_cols=160 Identities=21% Similarity=0.384 Sum_probs=104.2
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhC-------C--eEEEEe
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------A--NFISVK 543 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~-------~--~~i~v~ 543 (802)
...|.+|.|++++++.|.-....+ ...++||+|+|||||||+|++++..+. . ++..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 467899999999988776432211 124699999999999999999999982 2 222211
Q ss_pred C-c--------chhh-------h--------ccCcc--HHHH---HHHHHHHh--hCCCeEEEEcccchhhhccCCCCCC
Q 003691 544 G-P--------ELLT-------M--------WFGES--EANV---REIFDKAR--QSAPCVLFFDELDSIATQRGSSTGD 592 (802)
Q Consensus 544 ~-~--------~l~~-------~--------~vg~s--e~~i---~~lf~~a~--~~~p~il~iDEid~l~~~r~~~~~~ 592 (802)
+ + ++.. . .+|.. ++.+ ...|+.-. .....++|+|||+.+-
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 1 0 1100 0 11100 0000 00122100 0111499999999863
Q ss_pred CCCchHHHHHHHHHHhhccC-----------CCCcEEEEEecCCCC-CCCccccCCCCcceEEEecCCCH-HHHHHHHHH
Q 003691 593 AGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPDE-ASRLQIFKA 659 (802)
Q Consensus 593 ~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-~ld~allr~gRf~~~i~~~~p~~-~~r~~Il~~ 659 (802)
..+++.|+..|+... ...++++++|+|..+ .+.++++. ||...+.+++|.. ++|.+|++.
T Consensus 142 -----~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 142 -----DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred -----HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 567788888886432 234789999999765 58889998 9999999998876 999999987
Q ss_pred Hh
Q 003691 660 CL 661 (802)
Q Consensus 660 ~l 661 (802)
..
T Consensus 215 ~~ 216 (334)
T PRK13407 215 RD 216 (334)
T ss_pred hh
Confidence 54
No 226
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.20 E-value=6.3e-10 Score=115.63 Aligned_cols=112 Identities=25% Similarity=0.207 Sum_probs=74.3
Q ss_pred CeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCC------------CCCCCccccCCCC
Q 003691 571 PCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR------------PDIIDPALLRPGR 638 (802)
Q Consensus 571 p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~------------~~~ld~allr~gR 638 (802)
|.||||||++.|- -..++-|-+.|+.-- --+||.|||| |.-|+..|+. |
T Consensus 292 pGVLFIDEvHmLD--------------IE~FsFlnrAlEse~---aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHMLD--------------IECFSFLNRALESEL---APIIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhhh--------------HHHHHHHHHHhhccc---CcEEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 5677777777751 223444444454321 1278888986 4557777776 7
Q ss_pred cceEEEecCCCHHHHHHHHHHHhccCCCCCc-cCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q 003691 639 LDQLIYIPLPDEASRLQIFKACLRKSPISPD-VDLSALARYTHGFSGADITEVCQRACKYAIREN 702 (802)
Q Consensus 639 f~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~ 702 (802)
+- +|...|++.++.++|++..++...+.-+ .-++.|+.....-|=+.--+++.-|...|.+++
T Consensus 353 ll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg 416 (450)
T COG1224 353 LL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRG 416 (450)
T ss_pred ee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhC
Confidence 74 7888899999999999999876654432 236777776655555666667777777777664
No 227
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.20 E-value=2.3e-10 Score=128.60 Aligned_cols=167 Identities=25% Similarity=0.412 Sum_probs=107.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCC
Q 003691 238 PKGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPK 312 (802)
Q Consensus 238 ~~~vLL~GppGtGKTtLar~la~~l-----~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 312 (802)
...++||||+|+|||+|+++++.++ +..++++++.++...+...........|.... ..+.+|+|||++.+..+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGK 214 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCC
Confidence 3569999999999999999999886 46688899887765433221111111122211 23679999999998644
Q ss_pred CCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCC---CCHHhhccCCcc--eEEEeCCCCHHHHHHHHHHHhcc
Q 003691 313 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEILRIHTKN 387 (802)
Q Consensus 313 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~---ld~al~r~~rf~--~~i~i~~P~~~~R~~Il~~~~~~ 387 (802)
. .....|+..++.+......+|+++...|.. +++.+++ ||. ..+.++.|+.+.|..|++..+..
T Consensus 215 ~---------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 215 E---------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred H---------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 2 112345555554444445566666666654 4566766 664 57899999999999999988765
Q ss_pred Cccc-cchhhHHHHhhcCCCchHHHHHHHHH
Q 003691 388 MKLA-EDVDLERVAKDTHGYVGSDLAALCTE 417 (802)
Q Consensus 388 ~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~ 417 (802)
..+. ++..+..++....+-. +++...+..
T Consensus 284 ~~~~l~~e~l~~ia~~~~~~~-r~l~~~l~~ 313 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRSNV-RELEGALNR 313 (405)
T ss_pred cCCCCCHHHHHHHHHhcCCCH-HHHHHHHHH
Confidence 4432 3445777887766543 444444443
No 228
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=3.5e-10 Score=129.77 Aligned_cols=179 Identities=20% Similarity=0.243 Sum_probs=122.3
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 265 (802)
+++.+.+|++|.|++..++.|+.++... .-+..+||+||+|+||||+|+++|+.+...
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc
Confidence 4567889999999999999998888641 124579999999999999999999988642
Q ss_pred --------------EEEEechhhhhhccchhHHHHHHHHHHH----HhcCCeEEEecccccccCCCCCCchhHHHHHHHH
Q 003691 266 --------------FFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 327 (802)
Q Consensus 266 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 327 (802)
++.+++.. ...-..++.+.+.. ......|+||||+|.+. ....+.
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-----------~~a~na 138 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-----------REAFNA 138 (624)
T ss_pred cHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-----------HHHHHH
Confidence 23333211 01122334333222 23345699999999884 223567
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCcc-ccchhhHHHHhhcCCC
Q 003691 328 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHGY 406 (802)
Q Consensus 328 Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~ 406 (802)
|+..|+... ..+++|.+|+.+..+.+.+++ |+ ..+.|..++..+...+|+..+....+ .++..+..++..+.|-
T Consensus 139 LLk~LEEP~--~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~Gd 213 (624)
T PRK14959 139 LLKTLEEPP--ARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGS 213 (624)
T ss_pred HHHHhhccC--CCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 788877533 357777788888888888776 55 46789999999888888776654433 2334567777777664
Q ss_pred ch
Q 003691 407 VG 408 (802)
Q Consensus 407 ~~ 408 (802)
..
T Consensus 214 lR 215 (624)
T PRK14959 214 VR 215 (624)
T ss_pred HH
Confidence 43
No 229
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.18 E-value=2e-10 Score=128.64 Aligned_cols=194 Identities=24% Similarity=0.356 Sum_probs=145.1
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeE---E---------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF---I--------- 540 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~---i--------- 540 (802)
+..|+++.|++.+.+.|...+... +...+.||.||.|||||++||.+|..+++.- .
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 457899999999999999887642 3456799999999999999999999886431 0
Q ss_pred -EEe-C--cchhhh--ccCccHHHHHHHHHHHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhc
Q 003691 541 -SVK-G--PELLTM--WFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDG 610 (802)
Q Consensus 541 -~v~-~--~~l~~~--~vg~se~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~ 610 (802)
.++ | .+++.. -...+-..||++-+++.. ..+.|.+|||++.+ +...+|.||+.|+
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML--------------S~~afNALLKTLE- 144 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML--------------SKQAFNALLKTLE- 144 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh--------------hHHHHHHHhcccc-
Confidence 010 0 111100 001123467777776543 45679999999997 3567899999999
Q ss_pred cCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccC-HHHHHHHccCCCHHHHHH
Q 003691 611 MNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHGFSGADITE 689 (802)
Q Consensus 611 ~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-~~~la~~t~g~sg~di~~ 689 (802)
++...|++|.||..++.+.+-+++ |+. ++.|...+.++...-++..+.+-.+.-+.+ +..+|+..+| |-+|...
T Consensus 145 -EPP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDals 219 (515)
T COG2812 145 -EPPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALS 219 (515)
T ss_pred -cCccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHH
Confidence 556689999999999999999998 986 788999999999999999988777665443 5566666664 6789988
Q ss_pred HHHHHHHHH
Q 003691 690 VCQRACKYA 698 (802)
Q Consensus 690 ~~~~a~~~a 698 (802)
++..|....
T Consensus 220 lLDq~i~~~ 228 (515)
T COG2812 220 LLDQAIAFG 228 (515)
T ss_pred HHHHHHHcc
Confidence 888887764
No 230
>PRK06893 DNA replication initiation factor; Validated
Probab=99.18 E-value=3.9e-10 Score=116.47 Aligned_cols=150 Identities=15% Similarity=0.226 Sum_probs=97.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCC
Q 003691 239 KGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREK 315 (802)
Q Consensus 239 ~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~ 315 (802)
..++||||||||||+|++++|+++ +....+++..... .....+++.. ....+|+|||++.+..+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~--~~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENL--EQQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhc--ccCCEEEEeChhhhcCChH-
Confidence 468999999999999999999886 3344455443211 1111223332 2457999999998864321
Q ss_pred CchhHHHHHHHHHHHhhhcccCCC-cEEEEEecCCCCCCC---HHhhccCCcceEEEeCCCCHHHHHHHHHHHhc--cCc
Q 003691 316 THGEVERRIVSQLLTLMDGLKSRA-HVIVMGATNRPNSID---PALRRFGRFDREIDIGVPDEVGRLEILRIHTK--NMK 389 (802)
Q Consensus 316 ~~~~~~~~v~~~Ll~~ld~~~~~~-~vivI~~tn~~~~ld---~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~--~~~ 389 (802)
....|..+++...... .+++++++..|..++ +.+++..++...+.++.|+.++|.+|++..+. ++.
T Consensus 109 --------~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~ 180 (229)
T PRK06893 109 --------WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE 180 (229)
T ss_pred --------HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 1234555565554444 355666666676554 77887556678889999999999999997654 333
Q ss_pred cccchhhHHHHhhcCCCch
Q 003691 390 LAEDVDLERVAKDTHGYVG 408 (802)
Q Consensus 390 l~~~~~l~~la~~t~g~~~ 408 (802)
+. +..+..++.+..|-..
T Consensus 181 l~-~~v~~~L~~~~~~d~r 198 (229)
T PRK06893 181 LS-DEVANFLLKRLDRDMH 198 (229)
T ss_pred CC-HHHHHHHHHhccCCHH
Confidence 43 3346778877765433
No 231
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=9.9e-10 Score=125.42 Aligned_cols=186 Identities=17% Similarity=0.242 Sum_probs=122.9
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCC-----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------- 264 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~----------- 264 (802)
.++.+.+|+++.|++..++.|...+... ..+..+||+||+|+||||+|+++|+.+..
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK 75 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 4567889999999999999998887631 22445899999999999999999998753
Q ss_pred -------------cEEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEecccccccCCCCCCchhHHHHHHHH
Q 003691 265 -------------FFFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 327 (802)
Q Consensus 265 -------------~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 327 (802)
.++.+++..- ..-..++.+++.+. .....|+||||+|.+.. ...+.
T Consensus 76 C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~na 138 (546)
T PRK14957 76 CENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNA 138 (546)
T ss_pred cHHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHH
Confidence 1222222110 11233455555443 23456999999988742 24567
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCC
Q 003691 328 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 406 (802)
Q Consensus 328 Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 406 (802)
|+..|+... ..+.+|.+|+.+..+.+.+++ |+ ..+++..++..+-...+...++...+. ++..+..++..+.|-
T Consensus 139 LLK~LEepp--~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~Gd 213 (546)
T PRK14957 139 LLKTLEEPP--EYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGS 213 (546)
T ss_pred HHHHHhcCC--CCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 888887543 355566666778888878776 55 678999999988877777665544332 333456677666553
Q ss_pred chHHHHHHHH
Q 003691 407 VGSDLAALCT 416 (802)
Q Consensus 407 ~~~dl~~l~~ 416 (802)
.+++..++.
T Consensus 214 -lR~alnlLe 222 (546)
T PRK14957 214 -LRDALSLLD 222 (546)
T ss_pred -HHHHHHHHH
Confidence 333333443
No 232
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=6.6e-10 Score=126.82 Aligned_cols=177 Identities=18% Similarity=0.250 Sum_probs=122.2
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 265 (802)
+++.+.+|+++.|++..++.++.++.. -..+..+||+||+|+||||+|+++|..+.+.
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~ 75 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNS 75 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 467888999999999999999887753 1224679999999999999999999987531
Q ss_pred --------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHH
Q 003691 266 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 327 (802)
Q Consensus 266 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 327 (802)
++.+++.. ...-..++.+...+.. ....+++|||+|.+.. ...+.
T Consensus 76 C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~Na 138 (605)
T PRK05896 76 CSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNA 138 (605)
T ss_pred cHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHH
Confidence 12222211 1122346666655433 2345999999998742 23467
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCcc-ccchhhHHHHhhcCCC
Q 003691 328 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHGY 406 (802)
Q Consensus 328 Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~ 406 (802)
|+..|+... ..+++|.+|+.+..+.+++++ |+ ..+++..++..+....+...+....+ .++..+..++..+.|-
T Consensus 139 LLKtLEEPp--~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gd 213 (605)
T PRK05896 139 LLKTLEEPP--KHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGS 213 (605)
T ss_pred HHHHHHhCC--CcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc
Confidence 888887643 356677777888899988887 55 46899999999888888766554332 2233466777777664
No 233
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.16 E-value=2.9e-10 Score=128.26 Aligned_cols=157 Identities=20% Similarity=0.321 Sum_probs=102.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhccchhH-HHHHHHHHHHHhcCCeEEEecccccccCC
Q 003691 239 KGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESE-SNLRKAFEEAEKNAPSIIFIDELDSIAPK 312 (802)
Q Consensus 239 ~~vLL~GppGtGKTtLar~la~~l-----~~~~v~v~~~~l~~~~~g~~~-~~l~~vf~~a~~~~p~il~iDEid~l~~~ 312 (802)
..++||||+|||||+|++++++.+ +..++++++.++......... ..+.. |.......+.+|+|||++.+...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999875 346788888876654332211 11111 22222235789999999988643
Q ss_pred CCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC---CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcc--
Q 003691 313 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN-- 387 (802)
Q Consensus 313 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~l---d~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~-- 387 (802)
.. ....+...++.+......+++++.+.|..+ .+.+++.......+.+.+|+.+.|..|++..+..
T Consensus 210 ~~---------~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~ 280 (440)
T PRK14088 210 TG---------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEH 280 (440)
T ss_pred HH---------HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcC
Confidence 21 123344555544444556666666676654 4455552223467789999999999999987653
Q ss_pred CccccchhhHHHHhhcCCC
Q 003691 388 MKLAEDVDLERVAKDTHGY 406 (802)
Q Consensus 388 ~~l~~~~~l~~la~~t~g~ 406 (802)
..+.+ ..+..++....+-
T Consensus 281 ~~l~~-ev~~~Ia~~~~~~ 298 (440)
T PRK14088 281 GELPE-EVLNFVAENVDDN 298 (440)
T ss_pred CCCCH-HHHHHHHhccccC
Confidence 34433 3477788777664
No 234
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=8.6e-10 Score=127.48 Aligned_cols=193 Identities=16% Similarity=0.200 Sum_probs=126.0
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcE------E--
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF------F-- 267 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~------v-- 267 (802)
.++.+-+|+++.|.+..++.|+.++..- ..+..+||+||+|+||||+|+++|+.+.+.- .
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~ 75 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA 75 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC
Confidence 4677889999999999999998887641 2245689999999999999999999886410 0
Q ss_pred -----EEechhhhh----------hccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHHH
Q 003691 268 -----LINGPEIMS----------KLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQL 328 (802)
Q Consensus 268 -----~v~~~~l~~----------~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 328 (802)
.-+|..+.. ......-..++.+.+.+.. ....|++|||+|.+.. ...+.|
T Consensus 76 ~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~-----------~a~NaL 144 (618)
T PRK14951 76 TPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN-----------TAFNAM 144 (618)
T ss_pred CCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH-----------HHHHHH
Confidence 001111110 0001123356666665432 2235999999998742 234667
Q ss_pred HHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCCc
Q 003691 329 LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 407 (802)
Q Consensus 329 l~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 407 (802)
+..++... ..+.+|.+|+.+..+.+.+++ |+ ..+++..++.++....|+..+....+. ++..+..++..+.| .
T Consensus 145 LKtLEEPP--~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-s 218 (618)
T PRK14951 145 LKTLEEPP--EYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-S 218 (618)
T ss_pred HHhcccCC--CCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 77777533 355666677778888888776 55 668899999888888887666544432 23346777777766 3
Q ss_pred hHHHHHHHHH
Q 003691 408 GSDLAALCTE 417 (802)
Q Consensus 408 ~~dl~~l~~~ 417 (802)
.+++..++..
T Consensus 219 lR~al~lLdq 228 (618)
T PRK14951 219 MRDALSLTDQ 228 (618)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 235
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=1e-09 Score=127.23 Aligned_cols=188 Identities=21% Similarity=0.310 Sum_probs=128.8
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 265 (802)
.++.+.+|+++.|++..++.++..+... ..+..+||+||+|||||++|+.+|+.+.+.
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3567889999999999999998887641 235568999999999999999999987531
Q ss_pred --------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHH
Q 003691 266 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 327 (802)
Q Consensus 266 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 327 (802)
++.+++. .+.....++.+...+.. ....|++|||+|.+.. ...+.
T Consensus 76 C~~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~na 138 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNA 138 (559)
T ss_pred cHHHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHH
Confidence 2233221 11234456676666542 3346999999998742 23567
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCC
Q 003691 328 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 406 (802)
Q Consensus 328 Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 406 (802)
|+..++... ..+++|.+|+.++.+.+.+++ |+ ..+.|..|+..+....++..++...+. ++..+..++....|
T Consensus 139 LLKtLEepp--~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G- 212 (559)
T PRK05563 139 LLKTLEEPP--AHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG- 212 (559)
T ss_pred HHHHhcCCC--CCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 787777543 356666667778899998887 55 457899999988888888766554432 23446667776665
Q ss_pred chHHHHHHHHHH
Q 003691 407 VGSDLAALCTEA 418 (802)
Q Consensus 407 ~~~dl~~l~~~A 418 (802)
..+++..++..+
T Consensus 213 ~~R~al~~Ldq~ 224 (559)
T PRK05563 213 GMRDALSILDQA 224 (559)
T ss_pred CHHHHHHHHHHH
Confidence 444444444433
No 236
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.16 E-value=7.2e-11 Score=131.90 Aligned_cols=112 Identities=20% Similarity=0.275 Sum_probs=78.5
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcE------EEEechhhhh-----------------------------
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF------FLINGPEIMS----------------------------- 276 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~------v~v~~~~l~~----------------------------- 276 (802)
+|.+.+++.+.|+|.+||||||++++|.+.++... +..++.++.+
T Consensus 29 sf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~ 108 (539)
T COG1123 29 SFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVM 108 (539)
T ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchh
Confidence 45678899999999999999999999998875441 3334332210
Q ss_pred -----------------------------------------hccch--hHHHHHHHHHHHHhcCCeEEEecccccccCCC
Q 003691 277 -----------------------------------------KLAGE--SESNLRKAFEEAEKNAPSIIFIDELDSIAPKR 313 (802)
Q Consensus 277 -----------------------------------------~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 313 (802)
.|..+ ...+-|.++..+....|.+|+.||
T Consensus 109 tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDE-------- 180 (539)
T COG1123 109 TIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADE-------- 180 (539)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECC--------
Confidence 01111 123345666677778899999999
Q ss_pred CCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC
Q 003691 314 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 353 (802)
Q Consensus 314 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~l 353 (802)
+....+-.+..+++.++..+....++.+|..|+++..+
T Consensus 181 --PTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vv 218 (539)
T COG1123 181 --PTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVV 218 (539)
T ss_pred --CccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHH
Confidence 34444566778888888888877788888889876543
No 237
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.15 E-value=1.7e-09 Score=112.05 Aligned_cols=176 Identities=13% Similarity=0.152 Sum_probs=105.8
Q ss_pred CCCccccc--ChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC---CcEEEEechhh
Q 003691 200 EVGYDDVG--GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFLINGPEI 274 (802)
Q Consensus 200 ~~~~~~i~--G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~---~~~v~v~~~~l 274 (802)
+.+|++.. +....+..++++... ..+..++|+||+|||||+|+++++..+. ..+.+++....
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 34555533 445556666665432 2235799999999999999999998754 34555555432
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCc-EEEEEecCCCCC-
Q 003691 275 MSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH-VIVMGATNRPNS- 352 (802)
Q Consensus 275 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~-vivI~~tn~~~~- 352 (802)
.. ....+++.... ..+++|||++.+..+. .....|...++.....++ -+++.+++.|..
T Consensus 85 ~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~---------~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 85 AW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE---------LWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred hh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH---------HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 21 11122222221 3589999999885431 122334444444333333 355555566655
Q ss_pred --CCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcc--CccccchhhHHHHhhcCCCch
Q 003691 353 --IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN--MKLAEDVDLERVAKDTHGYVG 408 (802)
Q Consensus 353 --ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~--~~l~~~~~l~~la~~t~g~~~ 408 (802)
+.+.+++.......+.+..|+.+++.++++..... +.+. +..+..++....+-..
T Consensus 146 ~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~-~~v~~~L~~~~~~d~r 204 (235)
T PRK08084 146 NLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP-EDVGRFLLKRLDREMR 204 (235)
T ss_pred CcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHhhcCCHH
Confidence 57888883333478899999999999999875543 3333 3346777777766433
No 238
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.14 E-value=1.3e-09 Score=120.40 Aligned_cols=217 Identities=26% Similarity=0.347 Sum_probs=130.8
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhh----hCC-CCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hc
Q 003691 205 DVGGVRKQMAQIRELVELPLRHPQLFKS----IGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS-KL 278 (802)
Q Consensus 205 ~i~G~~~~~~~l~~~v~~~l~~~~~~~~----l~i-~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~-~~ 278 (802)
.|.|++++++.+...+.....+-..... -++ ....++||+||||||||++|++||..++.++..+++..+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 3899999999987766321111000000 011 12468999999999999999999999999999898877642 46
Q ss_pred cchh-HHHHHHHHHHH----HhcCCeEEEecccccccCCCCCCch--h-HHHHHHHHHHHhhhcccC-----------CC
Q 003691 279 AGES-ESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTHG--E-VERRIVSQLLTLMDGLKS-----------RA 339 (802)
Q Consensus 279 ~g~~-~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~--~-~~~~v~~~Ll~~ld~~~~-----------~~ 339 (802)
.|.. +..+...++.+ ....+++|||||+|.+.++...+.. + ....+...|++.|++... ..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 6653 34444444422 2346789999999999875432211 1 112466778888865421 12
Q ss_pred cEEEEEecCCCC--------------------------C------------------------CCHHhhccCCcceEEEe
Q 003691 340 HVIVMGATNRPN--------------------------S------------------------IDPALRRFGRFDREIDI 369 (802)
Q Consensus 340 ~vivI~~tn~~~--------------------------~------------------------ld~al~r~~rf~~~i~i 369 (802)
+.++|.|+|-.. . +.|++ .+|++..+.+
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEf--lgRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEF--IGRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHH--hCCCCeEeec
Confidence 456666666510 0 01111 3688888888
Q ss_pred CCCCHHHHHHHHHHH----hcc---------Cccc-cchhhHHHHhh--cCCCchHHHHHHHHHHHHHhH
Q 003691 370 GVPDEVGRLEILRIH----TKN---------MKLA-EDVDLERVAKD--THGYVGSDLAALCTEAALQCI 423 (802)
Q Consensus 370 ~~P~~~~R~~Il~~~----~~~---------~~l~-~~~~l~~la~~--t~g~~~~dl~~l~~~A~~~~~ 423 (802)
.+.+.+...+|+... .++ ..+. ++.-++.++.. ...|..+.+..++....+..+
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m 385 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVM 385 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHH
Confidence 899998888888642 211 1111 22235566654 345556666666665554443
No 239
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=6.9e-10 Score=127.64 Aligned_cols=188 Identities=16% Similarity=0.252 Sum_probs=125.4
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 265 (802)
.++.+.+|++|.|++..++.|..++... ..+..+||+||+|+||||+|+++|+.+...
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~ 75 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGV 75 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 3567789999999999999998887631 224568999999999999999999988642
Q ss_pred --------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHH
Q 003691 266 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 327 (802)
Q Consensus 266 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 327 (802)
++.+++. .......++.++..+.. ....|+||||+|.+.. ...+.
T Consensus 76 C~~C~~i~~~~~~d~~ei~~~------~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~na 138 (527)
T PRK14969 76 CSACLEIDSGRFVDLIEVDAA------SNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNA 138 (527)
T ss_pred CHHHHHHhcCCCCceeEeecc------ccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHH
Confidence 1122211 01223456777766532 2346999999997742 23467
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCC
Q 003691 328 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 406 (802)
Q Consensus 328 Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 406 (802)
|+..++... ..+.+|.+|+.+..+.+.+++ |+ ..+.+..++..+-...+...+....+. ++..+..++..+.|-
T Consensus 139 LLK~LEepp--~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gs 213 (527)
T PRK14969 139 MLKTLEEPP--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGS 213 (527)
T ss_pred HHHHHhCCC--CCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 888887643 356666677778888877776 54 567899999888877776655433332 233456677766654
Q ss_pred chHHHHHHHHHH
Q 003691 407 VGSDLAALCTEA 418 (802)
Q Consensus 407 ~~~dl~~l~~~A 418 (802)
.+++..++..+
T Consensus 214 -lr~al~lldqa 224 (527)
T PRK14969 214 -MRDALSLLDQA 224 (527)
T ss_pred -HHHHHHHHHHH
Confidence 34444555444
No 240
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.14 E-value=1.9e-09 Score=127.85 Aligned_cols=133 Identities=27% Similarity=0.323 Sum_probs=90.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhh------hhhcc----chhHHHHHHHHHHHHhcCCeEEEeccc
Q 003691 237 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEI------MSKLA----GESESNLRKAFEEAEKNAPSIIFIDEL 306 (802)
Q Consensus 237 ~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l------~~~~~----g~~~~~l~~vf~~a~~~~p~il~iDEi 306 (802)
....+||.||..||||+++..+|.+.|..|+.||..+- ++.|+ |...-+-+.+.. |.+.. -.+++||+
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVe-AlR~G-yWIVLDEL 964 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVE-ALRRG-YWIVLDEL 964 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHH-HHhcC-cEEEeecc
Confidence 34569999999999999999999999999999997553 23333 212222233333 33332 48899998
Q ss_pred ccccCCCCCCchhHHHHHHHHHHHhhhcc------------cCCCcEEEEEecCCCC------CCCHHhhccCCcceEEE
Q 003691 307 DSIAPKREKTHGEVERRIVSQLLTLMDGL------------KSRAHVIVMGATNRPN------SIDPALRRFGRFDREID 368 (802)
Q Consensus 307 d~l~~~~~~~~~~~~~~v~~~Ll~~ld~~------------~~~~~vivI~~tn~~~------~ld~al~r~~rf~~~i~ 368 (802)
...+ ..+++.|..++|.- ..++.+.+++|.|+|. .+..++|. || .+++
T Consensus 965 NLAp-----------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~h 1030 (4600)
T COG5271 965 NLAP-----------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMH 1030 (4600)
T ss_pred ccCc-----------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhh
Confidence 7542 23667777777753 2346778888888875 44667776 77 4567
Q ss_pred eCCCCHHHHHHHHHHHh
Q 003691 369 IGVPDEVGRLEILRIHT 385 (802)
Q Consensus 369 i~~P~~~~R~~Il~~~~ 385 (802)
|..-.+.+...||...+
T Consensus 1031 FddipedEle~ILh~rc 1047 (4600)
T COG5271 1031 FDDIPEDELEEILHGRC 1047 (4600)
T ss_pred cccCcHHHHHHHHhccC
Confidence 77777888888887433
No 241
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.14 E-value=1.3e-09 Score=128.91 Aligned_cols=173 Identities=24% Similarity=0.373 Sum_probs=115.1
Q ss_pred cccCCCCcccccChHHHHH---HHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEech
Q 003691 196 ERLNEVGYDDVGGVRKQMA---QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGP 272 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~---~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~ 272 (802)
+++.+.+++++.|.+..+. .+++++.. ....+++|+|||||||||+|+++++..+..++.+++.
T Consensus 20 ek~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 20 DRLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred HhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 3567889999999999885 45555542 2335799999999999999999999999888888864
Q ss_pred hhhhhccchhHHHHHHHHHHHH-----hcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEec
Q 003691 273 EIMSKLAGESESNLRKAFEEAE-----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGAT 347 (802)
Q Consensus 273 ~l~~~~~g~~~~~l~~vf~~a~-----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~t 347 (802)
... ...++.++..+. .....++||||+|.+... ....|+..++ ...+++|++|
T Consensus 87 ~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-----------qQdaLL~~lE----~g~IiLI~aT 144 (725)
T PRK13341 87 LAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-----------QQDALLPWVE----NGTITLIGAT 144 (725)
T ss_pred hhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-----------HHHHHHHHhc----CceEEEEEec
Confidence 311 112333333331 124569999999987421 1234555554 2456777655
Q ss_pred C--CCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcc-------Ccc-ccchhhHHHHhhcCCC
Q 003691 348 N--RPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKN-------MKL-AEDVDLERVAKDTHGY 406 (802)
Q Consensus 348 n--~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~-------~~l-~~~~~l~~la~~t~g~ 406 (802)
+ ....+++++.+ |. ..+.+++++.++...+++..+.. ..+ .++..+..++....|-
T Consensus 145 Tenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 145 TENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred CCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC
Confidence 3 33467788877 43 45889999999999999876651 111 1233467777766553
No 242
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.13 E-value=1.1e-09 Score=104.03 Aligned_cols=137 Identities=45% Similarity=0.726 Sum_probs=86.8
Q ss_pred ChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhccchhHH
Q 003691 208 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESES 284 (802)
Q Consensus 208 G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~~~~ 284 (802)
|.+.++..+...+.. ..+.+++|+||||||||++++.+++.+ +..++.+++.+...........
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 445555666555432 246789999999999999999999998 7788888887765433222111
Q ss_pred H---HHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccC----CCcEEEEEecCCCC--CCCH
Q 003691 285 N---LRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKS----RAHVIVMGATNRPN--SIDP 355 (802)
Q Consensus 285 ~---l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~----~~~vivI~~tn~~~--~ld~ 355 (802)
. ....+.......+.++++||++.+.. .....+...+..... ...+.+|++++... .+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~~~-----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSLSR-----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhhhH-----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcCh
Confidence 1 12222333445678999999997621 112334444444332 35677888888776 5666
Q ss_pred HhhccCCcceEEEeC
Q 003691 356 ALRRFGRFDREIDIG 370 (802)
Q Consensus 356 al~r~~rf~~~i~i~ 370 (802)
.+.. ||+..+.++
T Consensus 138 ~~~~--r~~~~i~~~ 150 (151)
T cd00009 138 ALYD--RLDIRIVIP 150 (151)
T ss_pred hHHh--hhccEeecC
Confidence 6665 776666554
No 243
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=1.7e-09 Score=125.83 Aligned_cols=184 Identities=20% Similarity=0.291 Sum_probs=125.2
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEE---Eech
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFL---INGP 272 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~---v~~~ 272 (802)
.++++.+|++|.|++..++.|+..+... ..+..+||+||+|+|||++|+++|..+.+..-. -.|.
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~ 77 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQ 77 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchh
Confidence 4568889999999999999999888641 224568999999999999999999987542110 0111
Q ss_pred hh----------h--hhccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhccc
Q 003691 273 EI----------M--SKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (802)
Q Consensus 273 ~l----------~--~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~ 336 (802)
.. . ..........++.+.+.+.. ....|++|||+|.+.. ...+.|+..|+...
T Consensus 78 ~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtLEEPP 146 (725)
T PRK07133 78 ECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTLEEPP 146 (725)
T ss_pred HHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHhhcCC
Confidence 00 0 00001123456777766543 3346999999998742 24567888887643
Q ss_pred CCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCCc
Q 003691 337 SRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 407 (802)
Q Consensus 337 ~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 407 (802)
..+++|.+|+.++.+.+.+++ |+ ..+.+..++..+....|...+....+. ++..+..++..+.|-.
T Consensus 147 --~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gsl 213 (725)
T PRK07133 147 --KHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSL 213 (725)
T ss_pred --CceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 356777777888899988887 66 468999999999888887665544432 2233666777766543
No 244
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.13 E-value=2.5e-09 Score=109.38 Aligned_cols=157 Identities=23% Similarity=0.422 Sum_probs=97.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCC
Q 003691 239 KGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKR 313 (802)
Q Consensus 239 ~~vLL~GppGtGKTtLar~la~~l-----~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 313 (802)
..++||||+|+|||+|++++++++ +..++++++.++...+.......--.-|..-. ....+|+||+++.+..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~DlL~iDDi~~l~~~- 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRL-RSADLLIIDDIQFLAGK- 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH-CTSSEEEEETGGGGTTH-
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhh-hcCCEEEEecchhhcCc-
Confidence 458999999999999999999874 45678898877765433222111111122221 24579999999998533
Q ss_pred CCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC---CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCcc
Q 003691 314 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL 390 (802)
Q Consensus 314 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~l---d~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l 390 (802)
......|..+++.+...++.+|+++...|..+ ++.+++.......+.+..|+.+.|..|++..+....+
T Consensus 113 --------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~ 184 (219)
T PF00308_consen 113 --------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI 184 (219)
T ss_dssp --------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT-
T ss_pred --------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC
Confidence 23456677777777666677777776666644 6677662234568899999999999999987654443
Q ss_pred c-cchhhHHHHhhcCC
Q 003691 391 A-EDVDLERVAKDTHG 405 (802)
Q Consensus 391 ~-~~~~l~~la~~t~g 405 (802)
. ++..+..++....+
T Consensus 185 ~l~~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 185 ELPEEVIEYLARRFRR 200 (219)
T ss_dssp -S-HHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHhhcC
Confidence 2 22335666666543
No 245
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=3.1e-09 Score=116.59 Aligned_cols=184 Identities=18% Similarity=0.171 Sum_probs=122.1
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe--------------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 538 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~-------------- 538 (802)
+.++++|.|++.+++.|...+.. -+.+..+||+||+|+||+++|.++|..+-..
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 45788999999999999887653 1455679999999999999999999886211
Q ss_pred --------------------EEEEeCc--chhhhccC-ccHHHHHHHHHHH----hhCCCeEEEEcccchhhhccCCCCC
Q 003691 539 --------------------FISVKGP--ELLTMWFG-ESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTG 591 (802)
Q Consensus 539 --------------------~i~v~~~--~l~~~~vg-~se~~i~~lf~~a----~~~~p~il~iDEid~l~~~r~~~~~ 591 (802)
++.+... +-..+.-. -.-..|+.+-+.+ ....+.|++|||+|.+-
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 1111110 00000000 0123455555443 34567899999999872
Q ss_pred CCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccC
Q 003691 592 DAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD 671 (802)
Q Consensus 592 ~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~ 671 (802)
....|.||+.++. ...+.++|.+|+.++.+.|.+.+ |+. .+.|++|+.++-.+++...... ..+..
T Consensus 155 ------~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~~ 220 (365)
T PRK07471 155 ------ANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD---LPDDP 220 (365)
T ss_pred ------HHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc---CCHHH
Confidence 4567889999984 34566777889999999888876 886 8999999999998888875411 11112
Q ss_pred HHHHHHHccCCCHHHHHHHH
Q 003691 672 LSALARYTHGFSGADITEVC 691 (802)
Q Consensus 672 ~~~la~~t~g~sg~di~~~~ 691 (802)
+..++..+.| |.....+++
T Consensus 221 ~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 221 RAALAALAEG-SVGRALRLA 239 (365)
T ss_pred HHHHHHHcCC-CHHHHHHHh
Confidence 2456666654 344444444
No 246
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.13 E-value=1.5e-09 Score=120.23 Aligned_cols=176 Identities=21% Similarity=0.333 Sum_probs=121.1
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 265 (802)
+++++.+|+++.|.+..++.+++.+... ..+..+||+||||+|||++++++++.+...
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~ 73 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNE 73 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 4567889999999999999998887531 235679999999999999999999887422
Q ss_pred --------------EEEEechhhhhhccchhHHHHHHHHHHHHhc----CCeEEEecccccccCCCCCCchhHHHHHHHH
Q 003691 266 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEKN----APSIIFIDELDSIAPKREKTHGEVERRIVSQ 327 (802)
Q Consensus 266 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 327 (802)
++.+++.. ......++.+++.+... ...++++||+|.+.. ...+.
T Consensus 74 c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~ 136 (355)
T TIGR02397 74 CESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNA 136 (355)
T ss_pred CHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHH
Confidence 23333221 11233466677665432 335999999987732 23456
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCC
Q 003691 328 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHG 405 (802)
Q Consensus 328 Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g 405 (802)
|+..++... ..+++|.+++.++.+.+.+++ |+ ..++++.|+..+...++...++...+. ++..+..++..+.|
T Consensus 137 Ll~~le~~~--~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 137 LLKTLEEPP--EHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHHhCCc--cceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 777776533 355666677878878888877 55 568999999999999988776654432 23345566666554
No 247
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.12 E-value=7.1e-10 Score=111.09 Aligned_cols=144 Identities=23% Similarity=0.299 Sum_probs=98.8
Q ss_pred CCCceeeeecCCCCchhHHHHHHHHHhCCe------------------------EEEEeCcchhhhccCccHHHHHHHHH
Q 003691 509 SPSKGVLFYGPPGCGKTLLAKAIANECQAN------------------------FISVKGPELLTMWFGESEANVREIFD 564 (802)
Q Consensus 509 ~~~~gill~GppGtGKT~lakala~~~~~~------------------------~i~v~~~~l~~~~vg~se~~i~~lf~ 564 (802)
..+..+||+||+|+|||++|+.++..+... +..+.... .. -....++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHH
Confidence 345669999999999999999999987431 22221110 00 12345666666
Q ss_pred HHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcc
Q 003691 565 KARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLD 640 (802)
Q Consensus 565 ~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~ 640 (802)
.+.. ....|+||||+|.+. ....+.||..|+.. ....++|.+||.++.|.+++.+ |+.
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~--------------~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~~ 148 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN--------------EAAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RCQ 148 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC--------------HHHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hcE
Confidence 5544 345799999999973 23467789988863 3455566667777899999987 885
Q ss_pred eEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccC
Q 003691 641 QLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG 681 (802)
Q Consensus 641 ~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g 681 (802)
.+.|++|+.++..++++.. .+++ ..+..+++.+.|
T Consensus 149 -~~~~~~~~~~~~~~~l~~~----gi~~-~~~~~i~~~~~g 183 (188)
T TIGR00678 149 -VLPFPPLSEEALLQWLIRQ----GISE-EAAELLLALAGG 183 (188)
T ss_pred -EeeCCCCCHHHHHHHHHHc----CCCH-HHHHHHHHHcCC
Confidence 8999999999998888876 2332 235566665543
No 248
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.12 E-value=1.7e-09 Score=113.96 Aligned_cols=133 Identities=26% Similarity=0.309 Sum_probs=91.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechh------hhhhccchhHHHH---------------------HHH
Q 003691 237 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPE------IMSKLAGESESNL---------------------RKA 289 (802)
Q Consensus 237 ~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~------l~~~~~g~~~~~l---------------------~~v 289 (802)
.+..+||+||||||||++|+++|..++.+++.++|.. +++.+.+...... +.+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3678999999999999999999999999999998743 3333322111110 111
Q ss_pred HHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhccc--------------CCCcEEEEEecCCCC----
Q 003691 290 FEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK--------------SRAHVIVMGATNRPN---- 351 (802)
Q Consensus 290 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--------------~~~~vivI~~tn~~~---- 351 (802)
+. +.. ...++++||++.+-+ .+...|+..|+.-. .+..+.+|+|+|+..
T Consensus 100 ~~-A~~-~g~~lllDEi~r~~~-----------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 100 TL-AVR-EGFTLVYDEFTRSKP-----------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HH-HHH-cCCEEEEcchhhCCH-----------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 21 222 346999999998642 23455666664311 223667889999752
Q ss_pred -CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHh
Q 003691 352 -SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT 385 (802)
Q Consensus 352 -~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~ 385 (802)
.+++++.+ || ..+.++.|+.++-.+|++.+.
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56788887 77 568999999999999998664
No 249
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.12 E-value=6.4e-10 Score=120.07 Aligned_cols=161 Identities=22% Similarity=0.349 Sum_probs=107.6
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC-------eEEEE-e
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISV-K 543 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~-------~~i~v-~ 543 (802)
+...|.+|.|++++|..|......| ...|+||.|++|||||++|++++..+.. +|... +
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 4568999999999999987665543 2247999999999999999999888731 22100 0
Q ss_pred Ccchh-----h---------------h----ccCccHHH------HHHHHHHHh---------hCCCeEEEEcccchhhh
Q 003691 544 GPELL-----T---------------M----WFGESEAN------VREIFDKAR---------QSAPCVLFFDELDSIAT 584 (802)
Q Consensus 544 ~~~l~-----~---------------~----~vg~se~~------i~~lf~~a~---------~~~p~il~iDEid~l~~ 584 (802)
.++.. . . -.|.++.. +...|.... +....+||+|||+.+-
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~- 157 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD- 157 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC-
Confidence 01100 0 0 01222221 112222211 1112599999999973
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHhhccC-----------CCCcEEEEEecCCCC-CCCccccCCCCcceEEEecCCC-HH
Q 003691 585 QRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPD-EA 651 (802)
Q Consensus 585 ~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-~ld~allr~gRf~~~i~~~~p~-~~ 651 (802)
..+++.||..|+... ...++++|+|.|..+ .+.++++. ||...+.+..|+ .+
T Consensus 158 -------------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 158 -------------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred -------------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 456777888876411 134788999888765 58899998 999999999997 59
Q ss_pred HHHHHHHHHh
Q 003691 652 SRLQIFKACL 661 (802)
Q Consensus 652 ~r~~Il~~~l 661 (802)
.+.+|++...
T Consensus 223 ~e~~il~~~~ 232 (350)
T CHL00081 223 LRVKIVEQRT 232 (350)
T ss_pred HHHHHHHhhh
Confidence 9999998764
No 250
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.12 E-value=1e-09 Score=125.42 Aligned_cols=158 Identities=18% Similarity=0.313 Sum_probs=104.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCC
Q 003691 239 KGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKR 313 (802)
Q Consensus 239 ~~vLL~GppGtGKTtLar~la~~l-----~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 313 (802)
..++|||++|||||+|++++++.+ +..++++++.++...+...........|..-. ..+++|+||||+++..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 349999999999999999999976 45678999888776554332222222333322 346899999999986542
Q ss_pred CCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC---CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCcc
Q 003691 314 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL 390 (802)
Q Consensus 314 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~---~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l 390 (802)
. ....|+++++.+....+-+||.+...|. .+++.|++.......+.+..|+.+.|..||+..+....+
T Consensus 394 ~---------tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l 464 (617)
T PRK14086 394 S---------TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL 464 (617)
T ss_pred H---------HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 1 1234555555554544445554444443 567888883344677899999999999999987764433
Q ss_pred c-cchhhHHHHhhcCCC
Q 003691 391 A-EDVDLERVAKDTHGY 406 (802)
Q Consensus 391 ~-~~~~l~~la~~t~g~ 406 (802)
. .+..+..|+....+-
T Consensus 465 ~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 465 NAPPEVLEFIASRISRN 481 (617)
T ss_pred CCCHHHHHHHHHhccCC
Confidence 2 233467777766543
No 251
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.12 E-value=5.1e-10 Score=120.97 Aligned_cols=155 Identities=23% Similarity=0.326 Sum_probs=101.7
Q ss_pred ccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhC-------CeEE-------
Q 003691 475 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFI------- 540 (802)
Q Consensus 475 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~-------~~~i------- 540 (802)
.|..|.|++++|..|.-....| ...+++|.|+||+|||||++++++.+. .++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4677899999998875543322 134699999999999999999998872 2221
Q ss_pred ------EE--eC-------------cchhh-----hccCcc--HHHH--------HHHHHHHhhCCCeEEEEcccchhhh
Q 003691 541 ------SV--KG-------------PELLT-----MWFGES--EANV--------REIFDKARQSAPCVLFFDELDSIAT 584 (802)
Q Consensus 541 ------~v--~~-------------~~l~~-----~~vg~s--e~~i--------~~lf~~a~~~~p~il~iDEid~l~~ 584 (802)
.. .. .++-. ..+|.. ++.+ ..++.+|. ..++|+|||+.+-
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~---~GvL~lDEi~~L~- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARAN---RGILYIDEVNLLE- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceecc---CCEEEecChHhCC-
Confidence 00 00 01100 112211 0000 01122222 2599999999863
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHhhccC-----------CCCcEEEEEecCCCC-CCCccccCCCCcceEEEecCCCH-H
Q 003691 585 QRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPDE-A 651 (802)
Q Consensus 585 ~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-~ld~allr~gRf~~~i~~~~p~~-~ 651 (802)
..+++.||..|+... ...++++|+|+|..+ .+.++++. ||...+.++.|+. +
T Consensus 145 -------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~e 209 (337)
T TIGR02030 145 -------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVE 209 (337)
T ss_pred -------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHH
Confidence 456777888886421 124688999988765 68899998 9999999998876 8
Q ss_pred HHHHHHHHHh
Q 003691 652 SRLQIFKACL 661 (802)
Q Consensus 652 ~r~~Il~~~l 661 (802)
+|.+|++...
T Consensus 210 er~eIL~~~~ 219 (337)
T TIGR02030 210 LRVEIVERRT 219 (337)
T ss_pred HHHHHHHhhh
Confidence 9999998754
No 252
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=1.5e-09 Score=118.39 Aligned_cols=190 Identities=17% Similarity=0.159 Sum_probs=122.4
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe-------EEEE-e-
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISV-K- 543 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~-------~i~v-~- 543 (802)
+..++++.|++++++.|...+... +.+..+||+||+|+|||++|+.+|..+... .... .
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 457889999999999998876531 345579999999999999999999987441 1000 0
Q ss_pred -------------Ccchh---hhc-c--C-----ccHHHHHHHHHH----HhhCCCeEEEEcccchhhhccCCCCCCCCC
Q 003691 544 -------------GPELL---TMW-F--G-----ESEANVREIFDK----ARQSAPCVLFFDELDSIATQRGSSTGDAGG 595 (802)
Q Consensus 544 -------------~~~l~---~~~-v--g-----~se~~i~~lf~~----a~~~~p~il~iDEid~l~~~r~~~~~~~~~ 595 (802)
.+++. ..+ . | -+-..++.+-+. +......|++|||+|.+-
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------ 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------ 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC------------
Confidence 01111 000 0 0 011334443332 223456799999999983
Q ss_pred chHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHH
Q 003691 596 AADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSAL 675 (802)
Q Consensus 596 ~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~l 675 (802)
....+.||..|+.. ..+.++|..|+.|+.+.|.+.+ |+ ..+.|++|+.++..++++.......++ +..+..+
T Consensus 155 --~~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i 226 (351)
T PRK09112 155 --RNAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEAL 226 (351)
T ss_pred --HHHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHH
Confidence 33567899999863 3455666667888888888876 98 599999999999999998743222211 2224566
Q ss_pred HHHccCCCHHHHHHHHHHHH
Q 003691 676 ARYTHGFSGADITEVCQRAC 695 (802)
Q Consensus 676 a~~t~g~sg~di~~~~~~a~ 695 (802)
++.+.| +++...+++....
T Consensus 227 ~~~s~G-~pr~Al~ll~~~~ 245 (351)
T PRK09112 227 LQRSKG-SVRKALLLLNYGG 245 (351)
T ss_pred HHHcCC-CHHHHHHHHhcCc
Confidence 665554 4555555554443
No 253
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.9e-09 Score=114.54 Aligned_cols=100 Identities=28% Similarity=0.475 Sum_probs=78.5
Q ss_pred ceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchh-hhccCcc-HHHHHHHHHHHhh----CCCeEEEEcccchhhhc
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGES-EANVREIFDKARQ----SAPCVLFFDELDSIATQ 585 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~-~~~vg~s-e~~i~~lf~~a~~----~~p~il~iDEid~l~~~ 585 (802)
.+|||.||+|+|||.||+.||..++.||...++..|. ..|||+. |.-|.++++.|.. ....|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 4599999999999999999999999999999998886 5799987 5667788877632 23469999999999854
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhhcc
Q 003691 586 RGSSTGDAGGAADRVLNQLLTEMDGM 611 (802)
Q Consensus 586 r~~~~~~~~~~~~~vl~~lL~~ld~~ 611 (802)
-.+-....+-....|...||..++|.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred CccccccccccchhHHHHHHHHhccc
Confidence 43322222334567899999999884
No 254
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.10 E-value=5.3e-10 Score=122.11 Aligned_cols=132 Identities=28% Similarity=0.426 Sum_probs=93.4
Q ss_pred CCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhh--hccCccHHHH------------HHHHHHHhhCCCeEEE
Q 003691 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT--MWFGESEANV------------REIFDKARQSAPCVLF 575 (802)
Q Consensus 510 ~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~--~~vg~se~~i------------~~lf~~a~~~~p~il~ 575 (802)
..+++||.||||||||++|+++|..++.+|+.+.+..-+. .-+|...-.. +.+|...+ +++|
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 4567999999999999999999999999999998764432 1122211111 11222211 4999
Q ss_pred EcccchhhhccCCCCCCCCCchHHHHHHHHHHhhc----------cCCCCcEEEEEecCC-----CCCCCccccCCCCcc
Q 003691 576 FDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDG----------MNAKKTVFIIGATNR-----PDIIDPALLRPGRLD 640 (802)
Q Consensus 576 iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~----------~~~~~~v~vi~aTn~-----~~~ld~allr~gRf~ 640 (802)
+|||+.. ...+.+.||..|+. +.-...++||+|+|. -..|.+|+++ ||.
T Consensus 118 ~DEInra--------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~ 181 (329)
T COG0714 118 LDEINRA--------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFL 181 (329)
T ss_pred EeccccC--------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEE
Confidence 9999874 35678888888887 223357889999994 3558899998 999
Q ss_pred eEEEecCC-CHHHHHHHHHHHh
Q 003691 641 QLIYIPLP-DEASRLQIFKACL 661 (802)
Q Consensus 641 ~~i~~~~p-~~~~r~~Il~~~l 661 (802)
..+++++| +.++...++....
T Consensus 182 ~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 182 LRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EEEecCCCCchHHHHHHHHhCc
Confidence 89999999 5555555555444
No 255
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=1.1e-09 Score=118.71 Aligned_cols=169 Identities=19% Similarity=0.272 Sum_probs=116.4
Q ss_pred ccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC--------eEEEEeCcc
Q 003691 475 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------NFISVKGPE 546 (802)
Q Consensus 475 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~--------~~i~v~~~~ 546 (802)
+|++|.|++.+++.|...+.. -+.++.+||+||+|+|||++|+++|..+-+ .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 689999999999998877642 134556899999999999999999997632 233332211
Q ss_pred hhhhccCccHHHHHHHHHH----HhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEe
Q 003691 547 LLTMWFGESEANVREIFDK----ARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGA 622 (802)
Q Consensus 547 l~~~~vg~se~~i~~lf~~----a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~a 622 (802)
++. -+-..|+.+-+. +......|++||++|.+- ....|.||..|+. +..++++|.+
T Consensus 70 --~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------------~~a~naLLK~LEe--pp~~t~~il~ 129 (313)
T PRK05564 70 --KKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------------EQAQNAFLKTIEE--PPKGVFIILL 129 (313)
T ss_pred --CCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEE
Confidence 010 122346655553 333455799999998872 3456889999995 4455666666
Q ss_pred cCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccC
Q 003691 623 TNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG 681 (802)
Q Consensus 623 Tn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g 681 (802)
|+.++.|-|.+.+ |+. .++|++|+.++....++..+.+ ++ +..+..++..+.|
T Consensus 130 ~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g 182 (313)
T PRK05564 130 CENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDG 182 (313)
T ss_pred eCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCC
Confidence 6778999999887 885 9999999999888877765432 22 2235556666555
No 256
>PHA02244 ATPase-like protein
Probab=99.10 E-value=1.2e-09 Score=117.02 Aligned_cols=127 Identities=20% Similarity=0.251 Sum_probs=82.7
Q ss_pred CceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhh---hccCccHH-HHHHHHHHHhhCCCeEEEEcccchhhhcc
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT---MWFGESEA-NVREIFDKARQSAPCVLFFDELDSIATQR 586 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~---~~vg~se~-~i~~lf~~a~~~~p~il~iDEid~l~~~r 586 (802)
...++|+||||||||++|+++|..++.+|+.+++-.-.. .+++.... .-..++...+ ...++||||++.+.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~--~GgvLiLDEId~a~p-- 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK--KGGLFFIDEIDASIP-- 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh--cCCEEEEeCcCcCCH--
Confidence 446999999999999999999999999999887421000 11111111 1112333222 336999999998632
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhc---------cCCCCcEEEEEecCCC-----------CCCCccccCCCCcceEEEec
Q 003691 587 GSSTGDAGGAADRVLNQLLTEMDG---------MNAKKTVFIIGATNRP-----------DIIDPALLRPGRLDQLIYIP 646 (802)
Q Consensus 587 ~~~~~~~~~~~~~vl~~lL~~ld~---------~~~~~~v~vi~aTn~~-----------~~ld~allr~gRf~~~i~~~ 646 (802)
.++..|...++. ...+.++.+|+|+|.+ ..|++|++. ||- .|+|+
T Consensus 195 ------------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~d 259 (383)
T PHA02244 195 ------------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFD 259 (383)
T ss_pred ------------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCC
Confidence 233444444432 1124578999999984 467999998 996 79999
Q ss_pred CCCHHHHHHHH
Q 003691 647 LPDEASRLQIF 657 (802)
Q Consensus 647 ~p~~~~r~~Il 657 (802)
.|+..+ ..|.
T Consensus 260 yp~~~E-~~i~ 269 (383)
T PHA02244 260 YDEKIE-HLIS 269 (383)
T ss_pred CCcHHH-HHHh
Confidence 998433 3444
No 257
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.10 E-value=1.4e-09 Score=122.38 Aligned_cols=157 Identities=20% Similarity=0.355 Sum_probs=100.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCC
Q 003691 239 KGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREK 315 (802)
Q Consensus 239 ~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~ 315 (802)
.+++||||+|+|||+|++++++.+ +..++++++.++...........-...|.... ..+++|+|||++++..+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~- 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA- 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-
Confidence 579999999999999999999876 56778888776654332211111111233322 3567999999999864321
Q ss_pred CchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC---CCCHHhhccCCc--ceEEEeCCCCHHHHHHHHHHHhccCcc
Q 003691 316 THGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN---SIDPALRRFGRF--DREIDIGVPDEVGRLEILRIHTKNMKL 390 (802)
Q Consensus 316 ~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~---~ld~al~r~~rf--~~~i~i~~P~~~~R~~Il~~~~~~~~l 390 (802)
....+...++.+......+|++++..|. .+++.+++ || ...+.+..|+.+.|..||+..+....+
T Consensus 220 --------~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~ 289 (445)
T PRK12422 220 --------TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSI 289 (445)
T ss_pred --------hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 1233444444333334556665655554 45677777 66 478899999999999999987765443
Q ss_pred c-cchhhHHHHhhcCCCc
Q 003691 391 A-EDVDLERVAKDTHGYV 407 (802)
Q Consensus 391 ~-~~~~l~~la~~t~g~~ 407 (802)
. ++..+..++....+-.
T Consensus 290 ~l~~evl~~la~~~~~di 307 (445)
T PRK12422 290 RIEETALDFLIEALSSNV 307 (445)
T ss_pred CCCHHHHHHHHHhcCCCH
Confidence 2 2334566777665433
No 258
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=3.1e-09 Score=120.87 Aligned_cols=182 Identities=20% Similarity=0.272 Sum_probs=119.3
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc-------E-E
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------F-F 267 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-------~-v 267 (802)
.++++.+|+++.|++..++.++..+... ..+..+||+||+|+||||+|+.+|..+... + .
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~ 75 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK 75 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc
Confidence 3567889999999999999998888531 224468999999999999999999987631 0 0
Q ss_pred EEechhhhh----------hccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhh
Q 003691 268 LINGPEIMS----------KLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD 333 (802)
Q Consensus 268 ~v~~~~l~~----------~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 333 (802)
..+|..+.+ ......-..++.+.+.+.. ....+++|||+|.+.. ...+.|+..++
T Consensus 76 c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLLk~LE 144 (486)
T PRK14953 76 CENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALLKTLE 144 (486)
T ss_pred cHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHHHHHh
Confidence 011111111 0001122335555544432 3456999999997742 23466777777
Q ss_pred cccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCC
Q 003691 334 GLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHG 405 (802)
Q Consensus 334 ~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g 405 (802)
... ..+++|.+|+.++.+.+++++ |+ ..+.+..|+..+...++...++...+. ++..+..++..+.|
T Consensus 145 epp--~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G 212 (486)
T PRK14953 145 EPP--PRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG 212 (486)
T ss_pred cCC--CCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 543 245555566777788888876 55 468899999999998888777655543 23345666766665
No 259
>PRK08727 hypothetical protein; Validated
Probab=99.09 E-value=4.2e-09 Score=109.00 Aligned_cols=147 Identities=25% Similarity=0.381 Sum_probs=95.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCC
Q 003691 238 PKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKRE 314 (802)
Q Consensus 238 ~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~ 314 (802)
...++|+||+|||||+|+++++..+ +...++++..+.. ..+..+++.. ....+|+|||++.+..+..
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l--~~~dlLiIDDi~~l~~~~~ 110 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEAL--EGRSLVALDGLESIAGQRE 110 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHH--hcCCEEEEeCcccccCChH
Confidence 3569999999999999999997764 4455666644432 2233344443 3456999999998764321
Q ss_pred CCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC---CHHhhccCCc--ceEEEeCCCCHHHHHHHHHHHhcc--
Q 003691 315 KTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEILRIHTKN-- 387 (802)
Q Consensus 315 ~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~l---d~al~r~~rf--~~~i~i~~P~~~~R~~Il~~~~~~-- 387 (802)
....+..+++....+..-+|+.+...|..+ ++.+++ || ...+.++.|+.+++.+|++.++..
T Consensus 111 ---------~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~ 179 (233)
T PRK08727 111 ---------DEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRG 179 (233)
T ss_pred ---------HHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcC
Confidence 113344555544333333444454566655 678877 54 567899999999999999976543
Q ss_pred CccccchhhHHHHhhcCCC
Q 003691 388 MKLAEDVDLERVAKDTHGY 406 (802)
Q Consensus 388 ~~l~~~~~l~~la~~t~g~ 406 (802)
+.+ ++..+..++....|-
T Consensus 180 l~l-~~e~~~~La~~~~rd 197 (233)
T PRK08727 180 LAL-DEAAIDWLLTHGERE 197 (233)
T ss_pred CCC-CHHHHHHHHHhCCCC
Confidence 333 334567788776654
No 260
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.09 E-value=2.2e-09 Score=120.79 Aligned_cols=173 Identities=23% Similarity=0.329 Sum_probs=115.2
Q ss_pred CCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhccCccHHHHHHHHHHHh----hCCCeEEEEcccchhhh
Q 003691 509 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIAT 584 (802)
Q Consensus 509 ~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~----~~~p~il~iDEid~l~~ 584 (802)
++.+-+||+||||-||||||+.+|+.+|...+.+++++-.+.- .....|..+.+.-. ...|.+|++||||.-.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~- 400 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP- 400 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCc-
Confidence 3344589999999999999999999999999999999864311 11223333332211 2578999999998742
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHhh-------ccCCC---------C---cEEEEEecCCCCCCCccccCCCCcceEEEe
Q 003691 585 QRGSSTGDAGGAADRVLNQLLTEMD-------GMNAK---------K---TVFIIGATNRPDIIDPALLRPGRLDQLIYI 645 (802)
Q Consensus 585 ~r~~~~~~~~~~~~~vl~~lL~~ld-------~~~~~---------~---~v~vi~aTn~~~~ld~allr~gRf~~~i~~ 645 (802)
...++.+|..+. |-... . .--|||.+|. ..-|||.----|-.+|+|
T Consensus 401 -------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f 465 (877)
T KOG1969|consen 401 -------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAF 465 (877)
T ss_pred -------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEe
Confidence 233444444443 11110 0 1358888885 456776532257789999
Q ss_pred cCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q 003691 646 PLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIREN 702 (802)
Q Consensus 646 ~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~ 702 (802)
++|......+=|+..+.+-.+. .|...|...++ ++..||++.++...+.+....
T Consensus 466 ~~p~~s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 466 VPPSQSRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASNVD 519 (877)
T ss_pred cCCChhHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHHhcc
Confidence 9999988888888777665554 34444444443 445699999999998887643
No 261
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=2e-09 Score=125.30 Aligned_cols=177 Identities=20% Similarity=0.306 Sum_probs=122.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 265 (802)
.++.+.+|++|.|++..++.|+.++... ..+..+||+||+|+||||+++++|+.+.+.
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~ 75 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV 75 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc
Confidence 4567889999999999999998887641 235568999999999999999999987532
Q ss_pred --------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHH
Q 003691 266 --------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 327 (802)
Q Consensus 266 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 327 (802)
++.+++.. ...-..++.+...+.. ....|+||||+|.+.. ...+.
T Consensus 76 c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~na 138 (576)
T PRK14965 76 CPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNA 138 (576)
T ss_pred cHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHH
Confidence 22233211 1123456666655432 2235999999998742 23577
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCC
Q 003691 328 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 406 (802)
Q Consensus 328 Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 406 (802)
|+..|+... ..+++|.+|+.++.+.+.+++ |+ ..++|..++..+-...+...++...+. ++..+..++..+.|-
T Consensus 139 LLk~LEepp--~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~ 213 (576)
T PRK14965 139 LLKTLEEPP--PHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGS 213 (576)
T ss_pred HHHHHHcCC--CCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 888888643 356777777888999988887 54 457888888888777776655544332 334566777777763
No 262
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=3.5e-09 Score=117.66 Aligned_cols=182 Identities=21% Similarity=0.267 Sum_probs=119.1
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechh--
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPE-- 273 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~-- 273 (802)
+++.+.+|+++.|.+..++.++..+... ..+.++|||||||+|||+++++++..+........+..
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 5678899999999999999998888641 23568999999999999999999998754211100000
Q ss_pred --h--hhhccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEE
Q 003691 274 --I--MSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMG 345 (802)
Q Consensus 274 --l--~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~ 345 (802)
+ ...........++.+++.+.. ....++++||++.+.. ...+.|+..++... ...++|.
T Consensus 77 ~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~~--~~~~~Il 143 (367)
T PRK14970 77 FNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEPP--AHAIFIL 143 (367)
T ss_pred cceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCCC--CceEEEE
Confidence 0 001111223556666766532 2356999999987742 22455666666532 2345555
Q ss_pred ecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCcc-ccchhhHHHHhhcCC
Q 003691 346 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHG 405 (802)
Q Consensus 346 ~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g 405 (802)
+++.+..+.+++++ |+ ..+++..|+..+...++...+.+..+ .++..+..++..+.|
T Consensus 144 ~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 144 ATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred EeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 66677888888876 44 45789999998888888766655443 233456666665544
No 263
>PRK09087 hypothetical protein; Validated
Probab=99.08 E-value=6.4e-10 Score=114.20 Aligned_cols=172 Identities=19% Similarity=0.218 Sum_probs=109.5
Q ss_pred ceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCC
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTG 591 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~ 591 (802)
+.++|+||+|||||+|+++++...+..++. ..++.. .++..... .++++||++.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~--~~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIH--PNEIGS-----------DAANAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEec--HHHcch-----------HHHHhhhc---CeEEEECCCCCCC-------
Confidence 348999999999999999999887655433 222211 11111111 3889999997621
Q ss_pred CCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCC---CCccccCCCCcc--eEEEecCCCHHHHHHHHHHHhccCCC
Q 003691 592 DAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEASRLQIFKACLRKSPI 666 (802)
Q Consensus 592 ~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allr~gRf~--~~i~~~~p~~~~r~~Il~~~l~~~~~ 666 (802)
.. ..|+..++.....++.+||+++..|.. ..+.+.+ ||. .++.+.+|+.+.|.+|++.+++...+
T Consensus 102 -----~~---~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~ 171 (226)
T PRK09087 102 -----DE---TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQL 171 (226)
T ss_pred -----CH---HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 01 335555555555566788877776643 3677877 885 78999999999999999999876544
Q ss_pred CCc-cCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcccccccccccccccHHHHHHHHhhc
Q 003691 667 SPD-VDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYA 743 (802)
Q Consensus 667 ~~~-~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 743 (802)
.-+ .-++.|++...+ +-+.+..++......+... .+.||...++++++.+
T Consensus 172 ~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~--------------------------~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 172 YVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALER--------------------------KSRITRALAAEVLNEM 222 (226)
T ss_pred CCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHh--------------------------CCCCCHHHHHHHHHhh
Confidence 322 236677776552 3344444444443333322 1357888888877654
No 264
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=4e-09 Score=119.22 Aligned_cols=176 Identities=19% Similarity=0.290 Sum_probs=119.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 265 (802)
+++.+.+|++|.|++..++.++..+... ..+..+||+||+|+|||++|+++|+.+...
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~ 76 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCN 76 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCc
Confidence 4677889999999999999998888631 234679999999999999999999987432
Q ss_pred ---------------EEEEechhhhhhccchhHHHHHHHHHHH----HhcCCeEEEecccccccCCCCCCchhHHHHHHH
Q 003691 266 ---------------FFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTHGEVERRIVS 326 (802)
Q Consensus 266 ---------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 326 (802)
++.+++... ..-..++.+.+.. ......++||||+|.+.. ...+
T Consensus 77 ~c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n 139 (451)
T PRK06305 77 QCASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFN 139 (451)
T ss_pred ccHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHH
Confidence 222322110 0112344333322 224567999999988742 2346
Q ss_pred HHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCC
Q 003691 327 QLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHG 405 (802)
Q Consensus 327 ~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g 405 (802)
.|+..++... ..+++|.+|+.+..+.+.+++ |+ ..+++..++.++....+...++..++. ++..+..++..+.|
T Consensus 140 ~LLk~lEep~--~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 140 SLLKTLEEPP--QHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHHhhcCC--CCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7888887643 355666677888888888887 55 468999999988888877665543332 33346667766655
No 265
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.8e-09 Score=110.01 Aligned_cols=83 Identities=23% Similarity=0.381 Sum_probs=64.5
Q ss_pred eEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC--------CCCcEEEEEec----CCCCCCCccccCCCCc
Q 003691 572 CVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--------AKKTVFIIGAT----NRPDIIDPALLRPGRL 639 (802)
Q Consensus 572 ~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--------~~~~v~vi~aT----n~~~~ld~allr~gRf 639 (802)
.|+||||||.++.+.+.++. +-....|...||-.++|.. ..+.+++||+. ..|+.|-|.|. |||
T Consensus 252 GIvFIDEIDKIa~~~~~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRF 327 (444)
T ss_pred CeEEEehhhHHHhcCCCCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCC
Confidence 59999999999987653322 2233457778888888743 24578888887 57888999998 799
Q ss_pred ceEEEecCCCHHHHHHHHH
Q 003691 640 DQLIYIPLPDEASRLQIFK 658 (802)
Q Consensus 640 ~~~i~~~~p~~~~r~~Il~ 658 (802)
.-.+++...+.+.-..||.
T Consensus 328 PIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 328 PIRVELDALTKEDFERILT 346 (444)
T ss_pred ceEEEcccCCHHHHHHHHc
Confidence 9999999999999888874
No 266
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.08 E-value=5.3e-09 Score=108.11 Aligned_cols=169 Identities=14% Similarity=0.269 Sum_probs=103.0
Q ss_pred CCCcccc--cChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhh
Q 003691 200 EVGYDDV--GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEI 274 (802)
Q Consensus 200 ~~~~~~i--~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l 274 (802)
+.+|++. |+.+..+..++++.. +...+..++|+||+|||||+|+++++... +..++.+++.++
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 3456653 344556666666543 12346789999999999999999999875 556788887665
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcE-EEEEecCCCC--
Q 003691 275 MSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV-IVMGATNRPN-- 351 (802)
Q Consensus 275 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v-ivI~~tn~~~-- 351 (802)
... +. ......+++|||++.+... ....|...++........ ++++++..+.
T Consensus 82 ~~~------------~~--~~~~~~~liiDdi~~l~~~-----------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~ 136 (227)
T PRK08903 82 LLA------------FD--FDPEAELYAVDDVERLDDA-----------QQIALFNLFNRVRAHGQGALLVAGPAAPLAL 136 (227)
T ss_pred HHH------------Hh--hcccCCEEEEeChhhcCch-----------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhC
Confidence 321 11 1234568999999986321 123455555554444443 4444433332
Q ss_pred CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCC
Q 003691 352 SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHG 405 (802)
Q Consensus 352 ~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g 405 (802)
.+.+.+.+.......+.+++|+...+..++........+. ++.-+..++....|
T Consensus 137 ~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g 191 (227)
T PRK08903 137 PLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR 191 (227)
T ss_pred CCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC
Confidence 2456666422225788999999998888888765443322 22345666664444
No 267
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.08 E-value=3.7e-09 Score=115.14 Aligned_cols=176 Identities=23% Similarity=0.286 Sum_probs=114.8
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCC-----cEEEEe
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-----FFFLIN 270 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~-----~~v~v~ 270 (802)
+++.+.+|+++.|.+.+++.++.++.. ....+++|+||||||||++++++++.+.. .++.++
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 456788999999999999999888753 11236899999999999999999998732 234444
Q ss_pred chhhhhhccchhHHHHHHHHHHHHh------cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEE
Q 003691 271 GPEIMSKLAGESESNLRKAFEEAEK------NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVM 344 (802)
Q Consensus 271 ~~~l~~~~~g~~~~~l~~vf~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI 344 (802)
+.+-. ....++..+..... ..+.++++||++.+... ....|...++..... ..+|
T Consensus 76 ~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-----------~~~~L~~~le~~~~~--~~lI 136 (319)
T PRK00440 76 ASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-----------AQQALRRTMEMYSQN--TRFI 136 (319)
T ss_pred ccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-----------HHHHHHHHHhcCCCC--CeEE
Confidence 33211 11112222222211 23468999999887421 234566666655443 3344
Q ss_pred EecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCcc-ccchhhHHHHhhcCCC
Q 003691 345 GATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTHGY 406 (802)
Q Consensus 345 ~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~ 406 (802)
.+++.+..+.+.+++ |+. .++++.++..+...+++..++...+ .++..+..++..+.|.
T Consensus 137 l~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd 196 (319)
T PRK00440 137 LSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGD 196 (319)
T ss_pred EEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 456666777777766 553 5899999999998888877765443 2344577777776654
No 268
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=3.8e-09 Score=121.98 Aligned_cols=186 Identities=19% Similarity=0.264 Sum_probs=125.6
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 265 (802)
.++.+.+|++|.|++..++.|+.++... ..+..+||+||+|+|||++|+++|+.+...
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 3567889999999999999999888631 224569999999999999999999987542
Q ss_pred --------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEecccccccCCCCCCchhHHHHHHHH
Q 003691 266 --------------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 327 (802)
Q Consensus 266 --------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 327 (802)
++.+++.. ...-..++.+.+.+. .....+++|||+|.+.. ...+.
T Consensus 76 C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~na 138 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNA 138 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHH
Confidence 12222110 012234555554432 34456999999998732 24566
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCC
Q 003691 328 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 406 (802)
Q Consensus 328 Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 406 (802)
|+..++.. ...+++|.+|+.+..+.+++++ |+ ..+++..++.++....++..+....+. ++..+..++....|-
T Consensus 139 LLK~LEep--p~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~Gd 213 (563)
T PRK06647 139 LLKTIEEP--PPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGS 213 (563)
T ss_pred HHHhhccC--CCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 77777753 3456676777778888888887 65 357899999988888888766544432 334566677776663
Q ss_pred chHHHHHHHH
Q 003691 407 VGSDLAALCT 416 (802)
Q Consensus 407 ~~~dl~~l~~ 416 (802)
.+++..++.
T Consensus 214 -lR~alslLd 222 (563)
T PRK06647 214 -VRDAYTLFD 222 (563)
T ss_pred -HHHHHHHHH
Confidence 344444443
No 269
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.07 E-value=2.6e-10 Score=111.66 Aligned_cols=113 Identities=27% Similarity=0.392 Sum_probs=76.5
Q ss_pred CCceeeeecCCCCchhHHHHHHHHHhCC----eEEEEeCcchhhhccCccHHHHHHHHHHHh----hCCCeEEEEcccch
Q 003691 510 PSKGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDS 581 (802)
Q Consensus 510 ~~~gill~GppGtGKT~lakala~~~~~----~~i~v~~~~l~~~~vg~se~~i~~lf~~a~----~~~p~il~iDEid~ 581 (802)
|...++|+||+|||||.+|+++|..+.. +++.++++++... ++.+..+..++..+. .....||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3345999999999999999999999996 9999999988651 111222222222111 01112999999999
Q ss_pred hhhccCCCCCCCCCchHHHHHHHHHHhhccC---------CCCcEEEEEecCCCC
Q 003691 582 IATQRGSSTGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRPD 627 (802)
Q Consensus 582 l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~~ 627 (802)
..+.. + ...+-....|++.||+.||+.. ..+++++|+|+|--.
T Consensus 80 a~~~~-~--~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSN-S--GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTT-T--TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccc-c--ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 87751 1 1122335578999999998742 135799999999754
No 270
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.06 E-value=7.5e-11 Score=111.98 Aligned_cols=109 Identities=28% Similarity=0.387 Sum_probs=72.8
Q ss_pred eeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchh------hhccC---ccHHHHHHHHHHHhhCCCeEEEEcccchhh
Q 003691 513 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL------TMWFG---ESEANVREIFDKARQSAPCVLFFDELDSIA 583 (802)
Q Consensus 513 gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~------~~~vg---~se~~i~~lf~~a~~~~p~il~iDEid~l~ 583 (802)
+|+|+||||||||+||+.+|..++.+++.+.++... ..|.- ..+-.-..+.+..+ .++++|||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC-
Confidence 489999999999999999999999999888876543 22211 10000000011111 4589999999885
Q ss_pred hccCCCCCCCCCchHHHHHHHHHHhhccC-----------CCC------cEEEEEecCCCC----CCCccccCCCCc
Q 003691 584 TQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKK------TVFIIGATNRPD----IIDPALLRPGRL 639 (802)
Q Consensus 584 ~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~------~v~vi~aTn~~~----~ld~allr~gRf 639 (802)
...+++.|+..++.-. ... ++.+|+|+|..+ .|++|+++ ||
T Consensus 78 -------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 -------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp --------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 2567777777776521 011 389999999998 89999999 87
No 271
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=9.2e-10 Score=127.86 Aligned_cols=170 Identities=22% Similarity=0.339 Sum_probs=125.2
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh----------CCeEEEE
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 542 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~----------~~~~i~v 542 (802)
.-.++-++|-++-..++.+.+.. +...+-+|+|+||+|||.++..+|... +...+.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 34556667766555555444332 334457999999999999999999875 3456788
Q ss_pred eCcchh--hhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEE
Q 003691 543 KGPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFII 620 (802)
Q Consensus 543 ~~~~l~--~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi 620 (802)
+...+. .+|-|+.|+.++.+.+...+..+.|||||||+.+.+..+..++ .-..-|.|--.| .++.+-+|
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-----a~DAaNiLKPaL----ARGeL~~I 303 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-----AMDAANLLKPAL----ARGELRCI 303 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-----ccchhhhhHHHH----hcCCeEEE
Confidence 877776 5799999999999999999888999999999999876543221 111223333333 25567899
Q ss_pred EecCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC
Q 003691 621 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPIS 667 (802)
Q Consensus 621 ~aTn~~~-----~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~ 667 (802)
|||..-+ .-|+||-| ||. .|++.-|+.++-..|++-.-.++...
T Consensus 304 GATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~h 352 (786)
T COG0542 304 GATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAH 352 (786)
T ss_pred EeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9996543 35899999 998 89999999999999998766655433
No 272
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.04 E-value=1.6e-09 Score=127.83 Aligned_cols=155 Identities=23% Similarity=0.338 Sum_probs=104.4
Q ss_pred ccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh-------------------
Q 003691 475 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC------------------- 535 (802)
Q Consensus 475 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~------------------- 535 (802)
.|.+|.|++.++..|.-....+ ...|+||.|++|||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4678999999988776543321 12469999999999999999999988
Q ss_pred ----------------CCeEEEEeCcchhhhccCcc--HHHHH--------HHHHHHhhCCCeEEEEcccchhhhccCCC
Q 003691 536 ----------------QANFISVKGPELLTMWFGES--EANVR--------EIFDKARQSAPCVLFFDELDSIATQRGSS 589 (802)
Q Consensus 536 ----------------~~~~i~v~~~~l~~~~vg~s--e~~i~--------~lf~~a~~~~p~il~iDEid~l~~~r~~~ 589 (802)
..+|+.+.........+|.. ++.+. .++..| .-.++|+|||+.+-
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~------ 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLD------ 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCC------
Confidence 24565554433222333321 11110 011111 22499999999973
Q ss_pred CCCCCCchHHHHHHHHHHhhccC-----------CCCcEEEEEecCCC-CCCCccccCCCCcceEEEecCCC-HHHHHHH
Q 003691 590 TGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRP-DIIDPALLRPGRLDQLIYIPLPD-EASRLQI 656 (802)
Q Consensus 590 ~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~-~~ld~allr~gRf~~~i~~~~p~-~~~r~~I 656 (802)
..+++.||..|+... ...++++|+|+|.- ..|.++|+. ||+..|.++.+. .+++.+|
T Consensus 140 --------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 140 --------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred --------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHH
Confidence 457788888887421 12468999999964 357889998 999999998764 6788888
Q ss_pred HHHHh
Q 003691 657 FKACL 661 (802)
Q Consensus 657 l~~~l 661 (802)
++..+
T Consensus 210 l~~~~ 214 (633)
T TIGR02442 210 IRRRL 214 (633)
T ss_pred HHHHH
Confidence 87654
No 273
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.04 E-value=1e-09 Score=103.20 Aligned_cols=127 Identities=33% Similarity=0.456 Sum_probs=83.5
Q ss_pred CceeeeecCCCCchhHHHHHHHHHhCCe---EEEEeCcchhhh--------------ccCccHHHHHHHHHHHhhCCCeE
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTM--------------WFGESEANVREIFDKARQSAPCV 573 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~~~~---~i~v~~~~l~~~--------------~vg~se~~i~~lf~~a~~~~p~i 573 (802)
+..++|+||||||||++++.+|..+... ++.+++...... ...........+++.++...+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3469999999999999999999999775 777777654321 12344567788999999888899
Q ss_pred EEEcccchhhhccCCCCCCCCCchHHHHHH--HHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCC
Q 003691 574 LFFDELDSIATQRGSSTGDAGGAADRVLNQ--LLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 648 (802)
Q Consensus 574 l~iDEid~l~~~r~~~~~~~~~~~~~vl~~--lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p 648 (802)
+|+||++.+..... ...... ...............+|+++|......+..+++ |++..+.++.+
T Consensus 82 iiiDei~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQ----------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHH----------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh-ccceEEEecCC
Confidence 99999999864311 000000 000111112244568888888733334444443 89888887654
No 274
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.04 E-value=1.3e-08 Score=119.27 Aligned_cols=166 Identities=26% Similarity=0.459 Sum_probs=106.3
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCcE
Q 003691 197 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFF 266 (802)
Q Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~ 266 (802)
.+.+.+|+++.|.+..++.+.+.+.. ..+.+++|+|||||||||+|+++.+.. +.++
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 45677899999999999887666532 234679999999999999999998765 2457
Q ss_pred EEEechhhh-------hhccchhHH----HHHHHHHH----------HHhcCCeEEEecccccccCCCCCCchhHHHHHH
Q 003691 267 FLINGPEIM-------SKLAGESES----NLRKAFEE----------AEKNAPSIIFIDELDSIAPKREKTHGEVERRIV 325 (802)
Q Consensus 267 v~v~~~~l~-------~~~~g~~~~----~l~~vf~~----------a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 325 (802)
+.++|..+. ....+.... ..+..+.. .......+||+||++.+-.. ..
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-----------~Q 282 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-----------LQ 282 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH-----------HH
Confidence 889886541 011111100 01111110 01123469999998876322 22
Q ss_pred HHHHHhhhcc--------------------------cCCCcEEEEE-ecCCCCCCCHHhhccCCcceEEEeCCCCHHHHH
Q 003691 326 SQLLTLMDGL--------------------------KSRAHVIVMG-ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 378 (802)
Q Consensus 326 ~~Ll~~ld~~--------------------------~~~~~vivI~-~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~ 378 (802)
..|+..++.- .....+++++ +++.+..+++++++ ||. .+.+++++.++..
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 3344443221 0122355555 55678889999987 774 5788999999999
Q ss_pred HHHHHHhccCc
Q 003691 379 EILRIHTKNMK 389 (802)
Q Consensus 379 ~Il~~~~~~~~ 389 (802)
.|++..+....
T Consensus 360 ~Il~~~a~~~~ 370 (615)
T TIGR02903 360 LIVLNAAEKIN 370 (615)
T ss_pred HHHHHHHHHcC
Confidence 99998776543
No 275
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.04 E-value=7.8e-09 Score=117.51 Aligned_cols=189 Identities=19% Similarity=0.217 Sum_probs=126.4
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCC-----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------- 264 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~----------- 264 (802)
+++.+.+|+++.|++..++.|+..+... .-+..+||+||+|+|||++|+++++.+..
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~ 73 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT 73 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 4678899999999999999998888531 23456799999999999999999998732
Q ss_pred -------------cEEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHH
Q 003691 265 -------------FFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 327 (802)
Q Consensus 265 -------------~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 327 (802)
.++.+++.+ ...-..++.+...... ....|++|||+|.+. ....+.
T Consensus 74 C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt-----------~~A~NA 136 (535)
T PRK08451 74 CIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT-----------KEAFNA 136 (535)
T ss_pred cHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHH
Confidence 122222211 0113455665554321 223589999998774 234567
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCC
Q 003691 328 LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGY 406 (802)
Q Consensus 328 Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 406 (802)
|+..|+.... .+.+|.+|+.+..+.+++++ |. ..+++..++..+-...+...++...+. ++..+..++....|
T Consensus 137 LLK~LEEpp~--~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G- 210 (535)
T PRK08451 137 LLKTLEEPPS--YVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG- 210 (535)
T ss_pred HHHHHhhcCC--ceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8888887533 45555566777899999988 64 578999999888887777665543332 33456677776665
Q ss_pred chHHHHHHHHHHH
Q 003691 407 VGSDLAALCTEAA 419 (802)
Q Consensus 407 ~~~dl~~l~~~A~ 419 (802)
..+++..++..+.
T Consensus 211 dlR~alnlLdqai 223 (535)
T PRK08451 211 SLRDTLTLLDQAI 223 (535)
T ss_pred cHHHHHHHHHHHH
Confidence 4445555555443
No 276
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.2e-08 Score=111.63 Aligned_cols=201 Identities=22% Similarity=0.330 Sum_probs=128.2
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc-----EEEEechhhhhh--
Q 003691 205 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-----FFLINGPEIMSK-- 277 (802)
Q Consensus 205 ~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-----~v~v~~~~l~~~-- 277 (802)
.+.+.+.+++++...+.-.++. ..|.++++||+||||||+.++.+++++... +++|||....+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 3888899999998876543322 345679999999999999999999987533 799999554221
Q ss_pred --------c-----cch-hHHHHHHHHHHHHh-cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEE
Q 003691 278 --------L-----AGE-SESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVI 342 (802)
Q Consensus 278 --------~-----~g~-~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vi 342 (802)
. .|. ..+.+..+++.... ....|+++||+|.|..+.+ .++..|....+.. ..++.
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v~ 158 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKVS 158 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeEE
Confidence 1 111 12233444444433 3456889999999987653 3445555555444 56788
Q ss_pred EEEecCCCC---CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCc---cccchhhHHHH---hhcCCCchHHHHH
Q 003691 343 VMGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMK---LAEDVDLERVA---KDTHGYVGSDLAA 413 (802)
Q Consensus 343 vI~~tn~~~---~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~---l~~~~~l~~la---~~t~g~~~~dl~~ 413 (802)
+|+.+|..+ .+|+.+.+... ..+|.|++.+..+...|+....+... ..++.-+..++ ...+| ..+-...
T Consensus 159 vi~i~n~~~~~~~ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aid 236 (366)
T COG1474 159 IIAVSNDDKFLDYLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAID 236 (366)
T ss_pred EEEEeccHHHHHHhhhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHH
Confidence 999888764 66787776322 24589999999999999987654321 11222233333 33333 2223345
Q ss_pred HHHHHHHHhHHhh
Q 003691 414 LCTEAALQCIREK 426 (802)
Q Consensus 414 l~~~A~~~~~~~~ 426 (802)
+++.|+..+-++.
T Consensus 237 ilr~A~eiAe~~~ 249 (366)
T COG1474 237 ILRRAGEIAEREG 249 (366)
T ss_pred HHHHHHHHHHhhC
Confidence 6677766655443
No 277
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.03 E-value=1.2e-09 Score=120.10 Aligned_cols=121 Identities=25% Similarity=0.490 Sum_probs=80.1
Q ss_pred CceeeeecCCCCchhHHHHHHHHHhCCe-------EEEEeC----cchhhhc----cCcc--HHHHHHHHHHHhhC--CC
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANECQAN-------FISVKG----PELLTMW----FGES--EANVREIFDKARQS--AP 571 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~~~~-------~i~v~~----~~l~~~~----vg~s--e~~i~~lf~~a~~~--~p 571 (802)
.++++|+||||||||++|+.+|..+... ++.+.. .+++..+ +|-. .....++.+.|... .|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 5679999999999999999999987431 223321 2333222 1111 11233445666543 47
Q ss_pred eEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhc--------------------cCCCCcEEEEEecCCCC----
Q 003691 572 CVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDG--------------------MNAKKTVFIIGATNRPD---- 627 (802)
Q Consensus 572 ~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~--------------------~~~~~~v~vi~aTn~~~---- 627 (802)
+++|||||++.- ..+++..+++.|+. +.-..++.||||+|..|
T Consensus 274 ~vliIDEINRan-------------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~ 340 (459)
T PRK11331 274 YVFIIDEINRAN-------------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLA 340 (459)
T ss_pred cEEEEehhhccC-------------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchh
Confidence 899999998852 34556666665552 22246899999999998
Q ss_pred CCCccccCCCCcceEEEecC
Q 003691 628 IIDPALLRPGRLDQLIYIPL 647 (802)
Q Consensus 628 ~ld~allr~gRf~~~i~~~~ 647 (802)
.+|.|++| ||. .|++.+
T Consensus 341 ~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 341 VVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred hccHHHHh--hhh-eEEecC
Confidence 79999999 996 566654
No 278
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=9.5e-09 Score=119.17 Aligned_cols=193 Identities=19% Similarity=0.188 Sum_probs=127.9
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEe-----
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLIN----- 270 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~----- 270 (802)
.++.+.+|++|.|++..++.|..++..- ..+..+||+||+|+||||+|+++|+.+.+.....+
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 4677889999999999999998887631 23568999999999999999999998864321111
Q ss_pred --------chhhhhh----------ccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHHH
Q 003691 271 --------GPEIMSK----------LAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQL 328 (802)
Q Consensus 271 --------~~~l~~~----------~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 328 (802)
|..+... .....-..++.+++.+.. ....|+||||+|.+.. ...+.|
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a~naL 152 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AAFNAL 152 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HHHHHH
Confidence 1111110 001123456777766543 2346999999998742 235678
Q ss_pred HHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCCc
Q 003691 329 LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 407 (802)
Q Consensus 329 l~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 407 (802)
+..|+.... .+.+|.+|+.++.+.+.+++ |+ ..+++..++..+....+...++...+. ++..+..++..+.|.
T Consensus 153 LKtLEePp~--~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gd- 226 (598)
T PRK09111 153 LKTLEEPPP--HVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGS- 226 (598)
T ss_pred HHHHHhCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 888876443 45555566777778888876 55 568999999998888887766544432 234466667777664
Q ss_pred hHHHHHHHHH
Q 003691 408 GSDLAALCTE 417 (802)
Q Consensus 408 ~~dl~~l~~~ 417 (802)
..++..++..
T Consensus 227 lr~al~~Ldk 236 (598)
T PRK09111 227 VRDGLSLLDQ 236 (598)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 279
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=9.8e-09 Score=119.90 Aligned_cols=184 Identities=18% Similarity=0.250 Sum_probs=121.7
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEE----E--
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFL----I-- 269 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~----v-- 269 (802)
+++.+..|+++.|++..++.|+.++... .-+.++||+||+|+|||++|+++|+.+...... -
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C 75 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC 75 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 4567889999999999999998888641 123579999999999999999999998652100 0
Q ss_pred -ech-----------hhh--hhccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHh
Q 003691 270 -NGP-----------EIM--SKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTL 331 (802)
Q Consensus 270 -~~~-----------~l~--~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ 331 (802)
.|. ++. ..........++.++..+.. ....|+||||+|.|.. ...+.|+..
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~naLLK~ 144 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFNALLKT 144 (620)
T ss_pred cccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHHHHHHH
Confidence 010 000 11112334567777766542 2346999999998732 245678888
Q ss_pred hhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCCCc
Q 003691 332 MDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHGYV 407 (802)
Q Consensus 332 ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 407 (802)
|+... ..+++|++|+++..+.+.+++ |+ ..++|..++..+-...+...+.+..+. +...+..++..+.|-.
T Consensus 145 LEePp--~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~l 216 (620)
T PRK14948 145 LEEPP--PRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGL 216 (620)
T ss_pred HhcCC--cCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH
Confidence 87533 356666677788888888887 55 557888888877666666554443221 2234666777766643
No 280
>PRK05642 DNA replication initiation factor; Validated
Probab=99.01 E-value=9.3e-09 Score=106.47 Aligned_cols=150 Identities=17% Similarity=0.255 Sum_probs=99.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCC
Q 003691 238 PKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKRE 314 (802)
Q Consensus 238 ~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~ 314 (802)
...++|+||+|||||+|+++++.++ +..+++++..++.... ..+++.... ..+|+|||++.+..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh-
Confidence 3679999999999999999998764 5667888887765421 122233222 3589999999875432
Q ss_pred CCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC---CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCcc-
Q 003691 315 KTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL- 390 (802)
Q Consensus 315 ~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~l---d~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l- 390 (802)
.....|.++++.+......++++++..|..+ .+.+++.......+.+..|+.+.+..+++..+....+
T Consensus 114 --------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~ 185 (234)
T PRK05642 114 --------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLH 185 (234)
T ss_pred --------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 1234567777766666677778777666433 5777772223467788999999999999855443322
Q ss_pred ccchhhHHHHhhcCCC
Q 003691 391 AEDVDLERVAKDTHGY 406 (802)
Q Consensus 391 ~~~~~l~~la~~t~g~ 406 (802)
.++..++.++....+-
T Consensus 186 l~~ev~~~L~~~~~~d 201 (234)
T PRK05642 186 LTDEVGHFILTRGTRS 201 (234)
T ss_pred CCHHHHHHHHHhcCCC
Confidence 2234466677666553
No 281
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.01 E-value=2.3e-08 Score=99.08 Aligned_cols=168 Identities=23% Similarity=0.302 Sum_probs=120.1
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechh
Q 003691 197 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPE 273 (802)
Q Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~ 273 (802)
.++.+.+.+|.|++.+++.+.+.....+ .-.|..+|||+|..|||||+|+|++-++. +...+.|+-.+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~---------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFA---------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHH---------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 4567889999999999999865543211 12467889999999999999999998886 45678888777
Q ss_pred hhhhccchhHHHHHHHHHHHHh-cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcc-cCC-CcEEEEEecCCC
Q 003691 274 IMSKLAGESESNLRKAFEEAEK-NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGL-KSR-AHVIVMGATNRP 350 (802)
Q Consensus 274 l~~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-~~~-~~vivI~~tn~~ 350 (802)
+.. +-.++...+. ...-|||+|++.+=- + ......|...|+|- ..+ .+|++.+|+|+.
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe~-------g---d~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSFEE-------G---DDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCCCC-------C---chHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 642 3344444443 345699999976521 1 12345666777653 333 478899999987
Q ss_pred CCCCHH--------------------hhccCCcceEEEeCCCCHHHHHHHHHHHhccCcccc
Q 003691 351 NSIDPA--------------------LRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAE 392 (802)
Q Consensus 351 ~~ld~a--------------------l~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~ 392 (802)
+.+++. +.-..||...+.|.+++.++-+.|+..+.+...+.-
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 655422 222468999999999999999999999888777653
No 282
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.01 E-value=8.6e-09 Score=102.07 Aligned_cols=170 Identities=22% Similarity=0.367 Sum_probs=121.9
Q ss_pred ecccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCc
Q 003691 469 VEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGP 545 (802)
Q Consensus 469 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~ 545 (802)
...+.+.+.+|.|.+.+|+.|.+.... |.. | .+..++||+|..|||||+|+||+-++. +..++.|+-.
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~-------F~~-G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQ-------FAE-G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHH-------HHc-C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 345668899999999999998765432 221 2 345679999999999999999999887 4567888887
Q ss_pred chhhhccCccHHHHHHHHHHHhhCC-CeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC--CCCcEEEEEe
Q 003691 546 ELLTMWFGESEANVREIFDKARQSA-PCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--AKKTVFIIGA 622 (802)
Q Consensus 546 ~l~~~~vg~se~~i~~lf~~a~~~~-p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--~~~~v~vi~a 622 (802)
++.. +-.+++..+... .-|||.|++-.= ..+.-...|-..|||.- ...+|+|.+|
T Consensus 123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe-------------~gd~~yK~LKs~LeG~ve~rP~NVl~YAT 180 (287)
T COG2607 123 DLAT---------LPDLVELLRARPEKFILFCDDLSFE-------------EGDDAYKALKSALEGGVEGRPANVLFYAT 180 (287)
T ss_pred HHhh---------HHHHHHHHhcCCceEEEEecCCCCC-------------CCchHHHHHHHHhcCCcccCCCeEEEEEe
Confidence 7743 334444444322 349999997441 11223455556677753 2468999999
Q ss_pred cCCCCCCCcc--------------------ccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCc
Q 003691 623 TNRPDIIDPA--------------------LLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPD 669 (802)
Q Consensus 623 Tn~~~~ld~a--------------------llr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~ 669 (802)
+||...|..- +--+.||...+.|++++.++-.+|+..+++++.++-+
T Consensus 181 SNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~ 247 (287)
T COG2607 181 SNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDIS 247 (287)
T ss_pred cCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCC
Confidence 9998665411 1113599999999999999999999999999887753
No 283
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=1.2e-08 Score=118.49 Aligned_cols=185 Identities=16% Similarity=0.235 Sum_probs=119.9
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEE-------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFL------- 268 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~------- 268 (802)
.++.+.+|++|.|++..++.|+.++... .-+..+||+||+|+||||+|+++|+.+.+....
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 4678889999999999999998887531 234569999999999999999999998652100
Q ss_pred ---Ee------chhhhh-------hccc---hhHHHHHHHHHHHH----hcCCeEEEecccccccCCCCCCchhHHHHHH
Q 003691 269 ---IN------GPEIMS-------KLAG---ESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIV 325 (802)
Q Consensus 269 ---v~------~~~l~~-------~~~g---~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 325 (802)
-. |..+.. ...+ .....++.+.+.+. .....+++|||+|.+.. ...
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-----------~a~ 144 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-----------AAF 144 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----------HHH
Confidence 00 111100 0011 11345555555442 23446999999988742 224
Q ss_pred HHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCcc-ccchhhHHHHhhcC
Q 003691 326 SQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTH 404 (802)
Q Consensus 326 ~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~ 404 (802)
+.|+..|+.... .+++|.+|+.+..+.+.+++ |. ..+++..++..+-...+...++...+ .++..+..++..+.
T Consensus 145 naLLK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 145 NAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 667888876433 34555556667888888876 44 56889999988877777665543332 23445677777776
Q ss_pred CCch
Q 003691 405 GYVG 408 (802)
Q Consensus 405 g~~~ 408 (802)
|..+
T Consensus 220 Gdlr 223 (620)
T PRK14954 220 GSMR 223 (620)
T ss_pred CCHH
Confidence 6433
No 284
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=4.7e-09 Score=117.34 Aligned_cols=183 Identities=15% Similarity=0.210 Sum_probs=114.8
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEE-------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFL------- 268 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~------- 268 (802)
+++.+.+|++|.|++..++.|+.++... ..+..+||+||+|+||||+|+++|+.+......
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 4678889999999999999998887631 234569999999999999999999988652100
Q ss_pred ---Eec------hhhhh-------hccc---hhHHHHHHHHHHHH----hcCCeEEEecccccccCCCCCCchhHHHHHH
Q 003691 269 ---ING------PEIMS-------KLAG---ESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIV 325 (802)
Q Consensus 269 ---v~~------~~l~~-------~~~g---~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 325 (802)
-.| ..+.. ...+ .....++.+.+.+. .....++||||+|.+.. ...
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~-----------~~~ 144 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI-----------AAF 144 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH-----------HHH
Confidence 000 00000 0001 11345555555442 22346999999998742 123
Q ss_pred HHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCcc-ccchhhHHHHhhcC
Q 003691 326 SQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVDLERVAKDTH 404 (802)
Q Consensus 326 ~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~ 404 (802)
+.|+..++.... ..++|.+++.+..+.+.+++ |. ..+++..++..+-...+...++...+ .++..+..++..+.
T Consensus 145 ~~LLk~LEep~~--~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~ 219 (397)
T PRK14955 145 NAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQ 219 (397)
T ss_pred HHHHHHHhcCCC--CeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 556777764332 44455555666777777776 44 35788888888877777765544332 23334566666666
Q ss_pred CC
Q 003691 405 GY 406 (802)
Q Consensus 405 g~ 406 (802)
|.
T Consensus 220 g~ 221 (397)
T PRK14955 220 GS 221 (397)
T ss_pred CC
Confidence 53
No 285
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=1.9e-09 Score=115.91 Aligned_cols=183 Identities=17% Similarity=0.259 Sum_probs=122.8
Q ss_pred ccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe----------EEEEeC
Q 003691 475 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----------FISVKG 544 (802)
Q Consensus 475 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~----------~i~v~~ 544 (802)
.|++|.|++.+++.|...+... +.+..+||+||+|+||+++|.++|..+-.. +...+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 5889999999999998887531 445679999999999999999999886221 111112
Q ss_pred cchhhh---c--cCc--------------------cHHHHHHHHHHHh----hCCCeEEEEcccchhhhccCCCCCCCCC
Q 003691 545 PELLTM---W--FGE--------------------SEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGG 595 (802)
Q Consensus 545 ~~l~~~---~--vg~--------------------se~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~ 595 (802)
||+.-. | -|. .-..++.+-+.+. .....|++||++|.+-
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------ 137 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------ 137 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------
Confidence 222100 0 010 0124566655543 3456799999999873
Q ss_pred chHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHH
Q 003691 596 AADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSAL 675 (802)
Q Consensus 596 ~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~l 675 (802)
....|.||+.|+... +.++|..|+.++.|-|.+++ |+. .+.|++|+.++..++++........ +.+...+
T Consensus 138 --~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l 207 (314)
T PRK07399 138 --EAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEIL--NINFPEL 207 (314)
T ss_pred --HHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhccccc--hhHHHHH
Confidence 345688999998654 33566677788999999987 985 9999999999999998876432111 1224677
Q ss_pred HHHccCCCHHHHHHHHH
Q 003691 676 ARYTHGFSGADITEVCQ 692 (802)
Q Consensus 676 a~~t~g~sg~di~~~~~ 692 (802)
+..+.| +++...++++
T Consensus 208 ~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 208 LALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHcCC-CHHHHHHHHH
Confidence 776665 4444444444
No 286
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.99 E-value=3.9e-09 Score=123.28 Aligned_cols=55 Identities=27% Similarity=0.496 Sum_probs=45.5
Q ss_pred ecccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe
Q 003691 469 VEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (802)
Q Consensus 469 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~ 538 (802)
+.+|..-|+++.|+++++..+...+.. +++++|+||||||||+++++++..+...
T Consensus 10 ~~~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 10 IPVPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cCcchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 346778899999999999888766542 2379999999999999999999999654
No 287
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.98 E-value=3.2e-09 Score=115.88 Aligned_cols=127 Identities=28% Similarity=0.422 Sum_probs=94.2
Q ss_pred CceeeeecCCCCchhHHHHHHHHHhC------------------------CeEEEEeCcchhhhccCccHHHHHHHHHHH
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANECQ------------------------ANFISVKGPELLTMWFGESEANVREIFDKA 566 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~~------------------------~~~i~v~~~~l~~~~vg~se~~i~~lf~~a 566 (802)
+..+||+||||+|||++|.++|+.+. .+++.++.++....- -....++.+-+..
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~ 101 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFL 101 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHh
Confidence 33599999999999999999999986 578888887764321 1234455544443
Q ss_pred hh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceE
Q 003691 567 RQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQL 642 (802)
Q Consensus 567 ~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~ 642 (802)
.. ....|+++||+|.+- ....+.++..|+. +..+..+|.+||.++.|-+.+.+ |+. .
T Consensus 102 ~~~~~~~~~kviiidead~mt--------------~~A~nallk~lEe--p~~~~~~il~~n~~~~il~tI~S--Rc~-~ 162 (325)
T COG0470 102 SESPLEGGYKVVIIDEADKLT--------------EDAANALLKTLEE--PPKNTRFILITNDPSKILPTIRS--RCQ-R 162 (325)
T ss_pred ccCCCCCCceEEEeCcHHHHh--------------HHHHHHHHHHhcc--CCCCeEEEEEcCChhhccchhhh--cce-e
Confidence 32 345799999999984 3467888998884 46678899999999999888877 886 8
Q ss_pred EEecCCCHHHHHHHHH
Q 003691 643 IYIPLPDEASRLQIFK 658 (802)
Q Consensus 643 i~~~~p~~~~r~~Il~ 658 (802)
+.|++|+...+....+
T Consensus 163 i~f~~~~~~~~i~~~e 178 (325)
T COG0470 163 IRFKPPSRLEAIAWLE 178 (325)
T ss_pred eecCCchHHHHHHHhh
Confidence 8888876655544444
No 288
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.98 E-value=8.2e-09 Score=116.65 Aligned_cols=170 Identities=15% Similarity=0.226 Sum_probs=107.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhccchhHHHHHHHHHHHH--hcCCeEEEecccccccC
Q 003691 239 KGILLYGPPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAE--KNAPSIIFIDELDSIAP 311 (802)
Q Consensus 239 ~~vLL~GppGtGKTtLar~la~~l-----~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~--~~~p~il~iDEid~l~~ 311 (802)
..++|||++|+|||+|+++++..+ +..++++++.++............ ..++... -..+.+|+|||++++..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~-~~~~~~~~~~~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH-KEIEQFKNEICQNDVLIIDDVQFLSY 220 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh-hHHHHHHHHhccCCEEEEeccccccC
Confidence 469999999999999999999865 356788988887665443322110 1112111 13567999999998854
Q ss_pred CCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC---CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccC
Q 003691 312 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNM 388 (802)
Q Consensus 312 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~---~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~ 388 (802)
+. ...+.|..+++.+......+|+.+...|. .+++.+++.......+.+..|+.++|.+|++..++..
T Consensus 221 k~---------~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~ 291 (450)
T PRK14087 221 KE---------KTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQ 291 (450)
T ss_pred CH---------HHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhc
Confidence 31 22345556665555544545554444454 3467777722234677899999999999999877653
Q ss_pred cc---ccchhhHHHHhhcCCCchHHHHHHHHHHH
Q 003691 389 KL---AEDVDLERVAKDTHGYVGSDLAALCTEAA 419 (802)
Q Consensus 389 ~l---~~~~~l~~la~~t~g~~~~dl~~l~~~A~ 419 (802)
.+ .++..+..++....|- .+.+..++....
T Consensus 292 gl~~~l~~evl~~Ia~~~~gd-~R~L~gaL~~l~ 324 (450)
T PRK14087 292 NIKQEVTEEAINFISNYYSDD-VRKIKGSVSRLN 324 (450)
T ss_pred CCCCCCCHHHHHHHHHccCCC-HHHHHHHHHHHH
Confidence 32 2344567777777764 344444444443
No 289
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.97 E-value=2.8e-09 Score=113.25 Aligned_cols=137 Identities=15% Similarity=0.177 Sum_probs=94.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh--ccchhHHH----------HHHHHHHHHhcCCeEEEe
Q 003691 236 KPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK--LAGESESN----------LRKAFEEAEKNAPSIIFI 303 (802)
Q Consensus 236 ~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~--~~g~~~~~----------l~~vf~~a~~~~p~il~i 303 (802)
..+++|+|.||||||||++++.+|..++.+++.|++...+.. ..|...-. ....+-.|. ..+.++++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illl 140 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCF 140 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEe
Confidence 346789999999999999999999999999999988654432 22321100 011222332 34678999
Q ss_pred cccccccCCCCCCchhHHHHHHHHHHHhhh------------cccCCCcEEEEEecCCCC------------CCCHHhhc
Q 003691 304 DELDSIAPKREKTHGEVERRIVSQLLTLMD------------GLKSRAHVIVMGATNRPN------------SIDPALRR 359 (802)
Q Consensus 304 DEid~l~~~~~~~~~~~~~~v~~~Ll~~ld------------~~~~~~~vivI~~tn~~~------------~ld~al~r 359 (802)
||++..-++ +...|..+++ .+..++.+.+|+|.|+.+ .+++++..
T Consensus 141 DEin~a~p~-----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD 209 (327)
T TIGR01650 141 DEYDAGRPD-----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD 209 (327)
T ss_pred chhhccCHH-----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh
Confidence 999987432 2333444443 122445788999999864 34677776
Q ss_pred cCCcceEEEeCCCCHHHHHHHHHHHhc
Q 003691 360 FGRFDREIDIGVPDEVGRLEILRIHTK 386 (802)
Q Consensus 360 ~~rf~~~i~i~~P~~~~R~~Il~~~~~ 386 (802)
||...+.+..|+.+.-.+|+.....
T Consensus 210 --RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 210 --RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred --heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 8987888999999999999976543
No 290
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=5.8e-09 Score=112.83 Aligned_cols=148 Identities=20% Similarity=0.289 Sum_probs=103.0
Q ss_pred CCCceeeeecCCCCchhHHHHHHHHHhCC------------------------eEEEEeCcchhhhccCccHHHHHHHHH
Q 003691 509 SPSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFD 564 (802)
Q Consensus 509 ~~~~gill~GppGtGKT~lakala~~~~~------------------------~~i~v~~~~l~~~~vg~se~~i~~lf~ 564 (802)
+.+..+||+||+|+|||++|+++|..+-. +++.+...+- ++. -.-..||++-+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHH
Confidence 44567999999999999999999988742 2333322110 000 12345665554
Q ss_pred HHh----hCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcc
Q 003691 565 KAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLD 640 (802)
Q Consensus 565 ~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~ 640 (802)
.+. .....|++||++|.+- ....|.||+.|+. +..++++|.+|+.++.|.|.+++ |+.
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~--------------~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~ 158 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMN--------------RNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ 158 (328)
T ss_pred HHhhccccCCCeEEEECChhhCC--------------HHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce
Confidence 443 3456799999999973 4567999999995 45678888999999999999998 997
Q ss_pred eEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccC
Q 003691 641 QLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG 681 (802)
Q Consensus 641 ~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g 681 (802)
.+.|++|+.++-.+.++..... ..+.+...++..+.|
T Consensus 159 -~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G 195 (328)
T PRK05707 159 -QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG 195 (328)
T ss_pred -eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC
Confidence 6999999999888888765311 122234455555554
No 291
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.97 E-value=5.5e-09 Score=110.89 Aligned_cols=190 Identities=19% Similarity=0.257 Sum_probs=113.6
Q ss_pred eeeeecCCCCchhHHHHHHHHHhCC-eEE--EEeCc-----chhh---hccCcc-----H-HHHHHHH----HHHhhCCC
Q 003691 513 GVLFYGPPGCGKTLLAKAIANECQA-NFI--SVKGP-----ELLT---MWFGES-----E-ANVREIF----DKARQSAP 571 (802)
Q Consensus 513 gill~GppGtGKT~lakala~~~~~-~~i--~v~~~-----~l~~---~~vg~s-----e-~~i~~lf----~~a~~~~p 571 (802)
-++|+||+|+||||+++.++..+.. .+. .+..+ +++. ...|.. . .....+. .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 3889999999999999999998763 222 11111 1110 011211 1 1112222 22334566
Q ss_pred eEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCC---CCC-c---cccCCCCcceEEE
Q 003691 572 CVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPD---IID-P---ALLRPGRLDQLIY 644 (802)
Q Consensus 572 ~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld-~---allr~gRf~~~i~ 644 (802)
.++++||++.+.. .....+..+... .......+.|..+..|+ .+. + .+.+ |+...++
T Consensus 125 ~vliiDe~~~l~~-----------~~~~~l~~l~~~---~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~ 188 (269)
T TIGR03015 125 ALLVVDEAQNLTP-----------ELLEELRMLSNF---QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCH 188 (269)
T ss_pred eEEEEECcccCCH-----------HHHHHHHHHhCc---ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeee
Confidence 8999999998632 112222222221 11122222222233332 222 2 2444 8888899
Q ss_pred ecCCCHHHHHHHHHHHhccCCCC-----CccCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcc
Q 003691 645 IPLPDEASRLQIFKACLRKSPIS-----PDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEA 719 (802)
Q Consensus 645 ~~~p~~~~r~~Il~~~l~~~~~~-----~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 719 (802)
+++.+.++..+++...++..+.. .+..++.|++.+.|. ++.|..+|..|...|..+.
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~----------------- 250 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEE----------------- 250 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcC-----------------
Confidence 99999999999999888654321 223467788888887 5669999999998887754
Q ss_pred cccccccccccccHHHHHHHHhhcC
Q 003691 720 MEEDEVDDVDEIKAVHFEESMKYAR 744 (802)
Q Consensus 720 ~~~~~~~~~~~i~~~~f~~al~~~~ 744 (802)
...|+.++++.++..+.
T Consensus 251 --------~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 --------KREIGGEEVREVIAEID 267 (269)
T ss_pred --------CCCCCHHHHHHHHHHhh
Confidence 23699999999988754
No 292
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.97 E-value=2.3e-08 Score=109.59 Aligned_cols=30 Identities=33% Similarity=0.525 Sum_probs=26.4
Q ss_pred hCCCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 003691 233 IGVKPPKGILLYGPPGSGKTLIARAVANET 262 (802)
Q Consensus 233 l~i~~~~~vLL~GppGtGKTtLar~la~~l 262 (802)
|.+.+++.+.|+||+||||||+++++++..
T Consensus 96 ~El~~g~rygLiG~nG~Gkst~L~~i~~~e 125 (614)
T KOG0927|consen 96 LELNRGRRYGLIGPNGSGKSTFLRAIAGRE 125 (614)
T ss_pred EEecCCceEEEEcCCCCcHhHHHHHHhcCC
Confidence 456789999999999999999999998753
No 293
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.97 E-value=1.4e-08 Score=120.77 Aligned_cols=136 Identities=21% Similarity=0.275 Sum_probs=88.7
Q ss_pred CCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchhh------hcc-CccHHH---HHHHHHHHhhCCCeEEEEc
Q 003691 508 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT------MWF-GESEAN---VREIFDKARQSAPCVLFFD 577 (802)
Q Consensus 508 ~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~~------~~v-g~se~~---i~~lf~~a~~~~p~il~iD 577 (802)
++..+++||.|.||+|||.|+.++|+..|...+.++-++-.. .++ ++.... ...=|-+|.+.. .-+++|
T Consensus 1540 mqv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLD 1618 (4600)
T COG5271 1540 MQVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLD 1618 (4600)
T ss_pred HhcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEee
Confidence 345678999999999999999999999999999998765432 221 110000 111233333322 478899
Q ss_pred ccchhhhccCCCCCCCCCchHHHHHHHHHHhhc------------cCCCCcEEEEEecCCCC------CCCccccCCCCc
Q 003691 578 ELDSIATQRGSSTGDAGGAADRVLNQLLTEMDG------------MNAKKTVFIIGATNRPD------IIDPALLRPGRL 639 (802)
Q Consensus 578 Eid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~------------~~~~~~v~vi~aTn~~~------~ld~allr~gRf 639 (802)
|+.-- +..|+.-|=..||. +..+.+..|+||-|.-+ .|+..++. ||
T Consensus 1619 EiNLa--------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF 1682 (4600)
T COG5271 1619 EINLA--------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF 1682 (4600)
T ss_pred hhhhh--------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh
Confidence 98652 22333333333332 12245678888888754 58889998 99
Q ss_pred ceEEEecCCCHHHHHHHHHHHh
Q 003691 640 DQLIYIPLPDEASRLQIFKACL 661 (802)
Q Consensus 640 ~~~i~~~~p~~~~r~~Il~~~l 661 (802)
. +|++..++.+....|.....
T Consensus 1683 s-vV~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1683 S-VVKMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred h-eEEecccccchHHHHHHhhC
Confidence 7 88888888777777766554
No 294
>PRK04132 replication factor C small subunit; Provisional
Probab=98.96 E-value=9.9e-09 Score=121.90 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=112.9
Q ss_pred eeeec--CCCCchhHHHHHHHHHh-----CCeEEEEeCcchhhhccCccHHHHHHHHHHHhhC------CCeEEEEcccc
Q 003691 514 VLFYG--PPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQS------APCVLFFDELD 580 (802)
Q Consensus 514 ill~G--ppGtGKT~lakala~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~------~p~il~iDEid 580 (802)
-+..| |++.||||+|+++|+++ +.+++.+++++..+ -..|+.+.+.+... ...|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 56668 99999999999999997 56799999998532 23556555443321 23699999999
Q ss_pred hhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHH
Q 003691 581 SIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKAC 660 (802)
Q Consensus 581 ~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~ 660 (802)
.+- ....+.|+..|+.. ...+.+|++||.++.|-+++.+ |+. .+.|++|+.++....++..
T Consensus 641 ~Lt--------------~~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC~-~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 641 ALT--------------QDAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred cCC--------------HHHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hce-EEeCCCCCHHHHHHHHHHH
Confidence 983 23578899999853 4578899999999999999987 985 8999999999998888887
Q ss_pred hccCCCC-CccCHHHHHHHccCCCHHHHHHHHHHH
Q 003691 661 LRKSPIS-PDVDLSALARYTHGFSGADITEVCQRA 694 (802)
Q Consensus 661 l~~~~~~-~~~~~~~la~~t~g~sg~di~~~~~~a 694 (802)
+++..+. ++..+..++..++| +.+...++++.+
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~ 735 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEG-DMRRAINILQAA 735 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 7654433 23346777776654 233333444443
No 295
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=1.8e-08 Score=117.93 Aligned_cols=182 Identities=19% Similarity=0.235 Sum_probs=116.9
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEE---Ee--
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFL---IN-- 270 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~---v~-- 270 (802)
+++.+.+|++|.|++..++.|+.++... ..+..+||+||+|+||||+++++|+.+...... ..
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 4678889999999999999998877531 224568999999999999999999987532100 00
Q ss_pred ----chhhhh----------hccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhh
Q 003691 271 ----GPEIMS----------KLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLM 332 (802)
Q Consensus 271 ----~~~l~~----------~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~l 332 (802)
|..+.. .........++.+.+.+.. ....|+||||+|.+.. ...+.|+..+
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~naLLk~L 144 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFNALLKTL 144 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHHHHHHHH
Confidence 011100 0001122344555444322 2346999999998742 2346677777
Q ss_pred hcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCC
Q 003691 333 DGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHG 405 (802)
Q Consensus 333 d~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g 405 (802)
+.... ..++|.+++..+.+.+.+++ |+ ..+.+..++..+...++...+....+. ++..+..++..+.|
T Consensus 145 Eepp~--~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G 213 (585)
T PRK14950 145 EEPPP--HAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG 213 (585)
T ss_pred hcCCC--CeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 76433 45555566677777777776 54 457898999888888887665544332 23346677766665
No 296
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=2.5e-09 Score=126.72 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=28.5
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
+|.+.++..+.|+||+|||||||+++|++.+.
T Consensus 21 s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~ 52 (638)
T PRK10636 21 TATINPGQKVGLVGKNGCGKSTLLALLKNEIS 52 (638)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45678899999999999999999999999753
No 297
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.92 E-value=5.2e-09 Score=98.38 Aligned_cols=128 Identities=36% Similarity=0.505 Sum_probs=80.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCCc---EEEEechhhhhh--------------ccchhHHHHHHHHHHHHhcCCeE
Q 003691 238 PKGILLYGPPGSGKTLIARAVANETGAF---FFLINGPEIMSK--------------LAGESESNLRKAFEEAEKNAPSI 300 (802)
Q Consensus 238 ~~~vLL~GppGtGKTtLar~la~~l~~~---~v~v~~~~l~~~--------------~~g~~~~~l~~vf~~a~~~~p~i 300 (802)
+.+++|+|||||||||+++.++..+... ++.+++...... .........+.+++.+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 5689999999999999999999998765 777776543221 22334556778888888877899
Q ss_pred EEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCC-CCCCCHHhhccCCcceEEEeCCC
Q 003691 301 IFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR-PNSIDPALRRFGRFDREIDIGVP 372 (802)
Q Consensus 301 l~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~-~~~ld~al~r~~rf~~~i~i~~P 372 (802)
+++||++.+......... ...................+|+++|. ....+..+++ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALL-----LLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHH-----HhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999988654211000 00000001111122345677777775 3334444444 67777766543
No 298
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=5.2e-09 Score=113.91 Aligned_cols=149 Identities=20% Similarity=0.219 Sum_probs=106.2
Q ss_pred ccccccc-cchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC----------------
Q 003691 475 SWEDIGG-LDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 537 (802)
Q Consensus 475 ~~~~i~g-~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~---------------- 537 (802)
.|+.|.| ++.+.+.|...+.. -+.+..+||+||+|+|||++|+++|..+-.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4778777 88899988877642 245567899999999999999999988632
Q ss_pred --------eEEEEeCcchhhhccCccHHHHHHHHHHHh----hCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHH
Q 003691 538 --------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLL 605 (802)
Q Consensus 538 --------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL 605 (802)
.+..+... +.. -.-..|+.+-+... .....|++|||+|.+- ....|.||
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------~~a~NaLL 131 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------ASAANSLL 131 (329)
T ss_pred HHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------------HHHHHHHH
Confidence 12222111 000 11235555554433 2345799999998872 44678999
Q ss_pred HHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHH
Q 003691 606 TEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKA 659 (802)
Q Consensus 606 ~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~ 659 (802)
+.|+. +.+.+++|.+|+.+..|-|.+++ |+. .++|++|+.++..++++.
T Consensus 132 K~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 132 KFLEE--PSGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHhcC--CCCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 99995 45567777788888899999887 886 899999999887777764
No 299
>PHA02244 ATPase-like protein
Probab=98.91 E-value=4.6e-08 Score=105.06 Aligned_cols=123 Identities=23% Similarity=0.354 Sum_probs=79.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechh----hhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCC
Q 003691 237 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPE----IMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPK 312 (802)
Q Consensus 237 ~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~----l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 312 (802)
.+..|+|+||||||||+||+++|..++.+++.+++.. +.+...+.....-..++... ....+++|||++.+.+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDASIPE 195 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCcCCHH
Confidence 3568999999999999999999999999999988531 11100000000111222222 34579999999977432
Q ss_pred CCCCchhHHHHHHHHHHHhhh---------cccCCCcEEEEEecCCC-----------CCCCHHhhccCCcceEEEeCCC
Q 003691 313 REKTHGEVERRIVSQLLTLMD---------GLKSRAHVIVMGATNRP-----------NSIDPALRRFGRFDREIDIGVP 372 (802)
Q Consensus 313 ~~~~~~~~~~~v~~~Ll~~ld---------~~~~~~~vivI~~tn~~-----------~~ld~al~r~~rf~~~i~i~~P 372 (802)
+...|..+++ .+..+..+.+|+|+|.+ ..++++++. ||. .+++..|
T Consensus 196 -----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp 261 (383)
T PHA02244 196 -----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYD 261 (383)
T ss_pred -----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCC
Confidence 2233334443 12234678899999973 467888887 884 5889998
Q ss_pred CHH
Q 003691 373 DEV 375 (802)
Q Consensus 373 ~~~ 375 (802)
...
T Consensus 262 ~~~ 264 (383)
T PHA02244 262 EKI 264 (383)
T ss_pred cHH
Confidence 743
No 300
>PRK06620 hypothetical protein; Validated
Probab=98.90 E-value=2.6e-08 Score=101.42 Aligned_cols=136 Identities=13% Similarity=0.208 Sum_probs=88.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCch
Q 003691 239 KGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHG 318 (802)
Q Consensus 239 ~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~ 318 (802)
..++||||||||||+|++++++..+..++ ..... ....+ ....+++|||++.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~-----------~~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF-----------NEEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh-----------chhHH-----hcCCEEEEeccccch--------
Confidence 67999999999999999999988765322 21110 00111 234689999999541
Q ss_pred hHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCC--CCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCcc-ccchh
Q 003691 319 EVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS--IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AEDVD 395 (802)
Q Consensus 319 ~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~--ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~~~ 395 (802)
. ..|..+++.+...+..++++++..|.. + +.+++.......+.+..|+.+.+..+++.......+ .++..
T Consensus 99 ---~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev 171 (214)
T PRK06620 99 ---E---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI 171 (214)
T ss_pred ---H---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 0 235555555555666777777766654 4 677772223356899999999999999877653332 23344
Q ss_pred hHHHHhhcCCCc
Q 003691 396 LERVAKDTHGYV 407 (802)
Q Consensus 396 l~~la~~t~g~~ 407 (802)
++.++....+-.
T Consensus 172 ~~~L~~~~~~d~ 183 (214)
T PRK06620 172 IDFLLVNLPREY 183 (214)
T ss_pred HHHHHHHccCCH
Confidence 677777766543
No 301
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.89 E-value=1.2e-09 Score=108.24 Aligned_cols=139 Identities=27% Similarity=0.424 Sum_probs=66.3
Q ss_pred cccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe----------EEEEeC-
Q 003691 476 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----------FISVKG- 544 (802)
Q Consensus 476 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~----------~i~v~~- 544 (802)
|.+|.|++..|..|.-... | ..++||+||||||||++|+.+...+-.- ..++.+
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 6789999999998865543 2 3579999999999999999999876310 000000
Q ss_pred ---------cchhhhccCccHHHHHHHH-----------HHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHH
Q 003691 545 ---------PELLTMWFGESEANVREIF-----------DKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQL 604 (802)
Q Consensus 545 ---------~~l~~~~vg~se~~i~~lf-----------~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~l 604 (802)
.-+.......+ ...++ ..|.. .|||+||+-.+ .+.+++.|
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s---~~~liGgg~~~~PGeislAh~---GVLflDE~~ef--------------~~~vld~L 126 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSAS---EAALIGGGRPPRPGEISLAHR---GVLFLDELNEF--------------DRSVLDAL 126 (206)
T ss_dssp S---EEEE---EEEE-TT-----HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS---------------HHHHHHH
T ss_pred CCCCceecCCCcccCCCCcC---HHHHhCCCcCCCcCHHHHhcC---CEEEechhhhc--------------CHHHHHHH
Confidence 00000000001 11111 12222 49999998654 47899999
Q ss_pred HHHhhccC-----------CCCcEEEEEecCCC-----------------------CCCCccccCCCCcceEEEecCCCH
Q 003691 605 LTEMDGMN-----------AKKTVFIIGATNRP-----------------------DIIDPALLRPGRLDQLIYIPLPDE 650 (802)
Q Consensus 605 L~~ld~~~-----------~~~~v~vi~aTn~~-----------------------~~ld~allr~gRf~~~i~~~~p~~ 650 (802)
++-|+... -.-++++|+|+|.= ..|...++. |||..+.++..+.
T Consensus 127 r~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~ 204 (206)
T PF01078_consen 127 RQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSY 204 (206)
T ss_dssp HHHHHHSBEEEEETTEEEEEB--EEEEEEE-S------------------------------------------------
T ss_pred HHHHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 99997532 12367899999841 236667776 8888888887665
Q ss_pred H
Q 003691 651 A 651 (802)
Q Consensus 651 ~ 651 (802)
+
T Consensus 205 ~ 205 (206)
T PF01078_consen 205 E 205 (206)
T ss_dssp -
T ss_pred C
Confidence 4
No 302
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.88 E-value=1.4e-08 Score=107.88 Aligned_cols=66 Identities=33% Similarity=0.540 Sum_probs=45.7
Q ss_pred cccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhC--CeEEEEeCcchhh
Q 003691 476 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT 549 (802)
Q Consensus 476 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~--~~~i~v~~~~l~~ 549 (802)
.+.++|+.+.++..--.+.. . +-+.-.++++||.||||||||.||-++|.+++ .||+.++++++.+
T Consensus 23 ~~GlVGQ~~AReAagiiv~m-------I-k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDM-------I-KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHH-------H-HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred cccccChHHHHHHHHHHHHH-------H-hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 45678888887765443332 1 11334568899999999999999999999997 7899999998875
No 303
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.88 E-value=1.5e-09 Score=103.01 Aligned_cols=109 Identities=26% Similarity=0.410 Sum_probs=68.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh------hhccc---hhHHHHHHHHHHHHhcCCeEEEeccccccc
Q 003691 240 GILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM------SKLAG---ESESNLRKAFEEAEKNAPSIIFIDELDSIA 310 (802)
Q Consensus 240 ~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~------~~~~g---~~~~~l~~vf~~a~~~~p~il~iDEid~l~ 310 (802)
+|+|+||||||||+|++.+|..++.+++.++++... +.+.- .....-..+.+.. ..+.++||||++..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccCC
Confidence 589999999999999999999999999888875532 22211 0000000011111 156899999998653
Q ss_pred CCCCCCchhHHHHHHHHHHHhhhccc-----------CCC------cEEEEEecCCCC----CCCHHhhccCCc
Q 003691 311 PKREKTHGEVERRIVSQLLTLMDGLK-----------SRA------HVIVMGATNRPN----SIDPALRRFGRF 363 (802)
Q Consensus 311 ~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~------~vivI~~tn~~~----~ld~al~r~~rf 363 (802)
..+...|+.+++.-. ... ++.+|+|+|+.. .+++++++ ||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 234555556555311 111 389999999988 88999987 65
No 304
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.87 E-value=7.9e-09 Score=111.49 Aligned_cols=159 Identities=23% Similarity=0.405 Sum_probs=98.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCC-cEEEEECCCCCcHHHHHHHHHHHhCCc---------EEE
Q 003691 199 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPP-KGILLYGPPGSGKTLIARAVANETGAF---------FFL 268 (802)
Q Consensus 199 ~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~-~~vLL~GppGtGKTtLar~la~~l~~~---------~v~ 268 (802)
.+..|++|.|++..+..+.-... .++ .++||.|+|||||||+++++++.++.. +..
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~--------------~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~ 68 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSAR 68 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh--------------ccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCc
Confidence 45678999999999887753321 123 579999999999999999999998421 111
Q ss_pred Eec-hhh--------hh-------hccchhHHH-HH------------HHHHHH--HhcCCeEEEecccccccCCCCCCc
Q 003691 269 ING-PEI--------MS-------KLAGESESN-LR------------KAFEEA--EKNAPSIIFIDELDSIAPKREKTH 317 (802)
Q Consensus 269 v~~-~~l--------~~-------~~~g~~~~~-l~------------~vf~~a--~~~~p~il~iDEid~l~~~~~~~~ 317 (802)
+.+ ++. .. ...+.++.. ++ .+|+.- ......+||+||++.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~------- 141 (334)
T PRK13407 69 PEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE------- 141 (334)
T ss_pred ccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC-------
Confidence 110 000 00 000000000 00 011110 00112489999999874
Q ss_pred hhHHHHHHHHHHHhhhccc-----------CCCcEEEEEecCCCC-CCCHHhhccCCcceEEEeCCCCH-HHHHHHHHHH
Q 003691 318 GEVERRIVSQLLTLMDGLK-----------SRAHVIVMGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLEILRIH 384 (802)
Q Consensus 318 ~~~~~~v~~~Ll~~ld~~~-----------~~~~vivI~~tn~~~-~ld~al~r~~rf~~~i~i~~P~~-~~R~~Il~~~ 384 (802)
..+.+.|+..|+.-. ....+++++++|..+ .+.+++.. ||...+.++.|.. ++|.+|+...
T Consensus 142 ----~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 142 ----DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ----HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 235566777775321 234688899988755 57888877 8998999988876 8889998753
No 305
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.87 E-value=3.5e-08 Score=112.29 Aligned_cols=144 Identities=24% Similarity=0.374 Sum_probs=89.6
Q ss_pred cccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe--EEEEeCcchhh--
Q 003691 474 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLT-- 549 (802)
Q Consensus 474 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~--~i~v~~~~l~~-- 549 (802)
..|+++.|++.+++.+.-.+ .....++|+||||||||++++.+++.+... -..+....+.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 36788888888766554332 233569999999999999999999865321 01111111100
Q ss_pred ------------------------hccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHH
Q 003691 550 ------------------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLL 605 (802)
Q Consensus 550 ------------------------~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL 605 (802)
..+|.....-...+..|.. .+|||||++.+- ..++..|+
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~--------------~~~~~~L~ 316 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFK--------------RSVLDALR 316 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCC--------------HHHHHHHH
Confidence 0011100000012333322 599999998862 45777777
Q ss_pred HHhhccC-----------CCCcEEEEEecCCC------C-----------------CCCccccCCCCcceEEEecCCCHH
Q 003691 606 TEMDGMN-----------AKKTVFIIGATNRP------D-----------------IIDPALLRPGRLDQLIYIPLPDEA 651 (802)
Q Consensus 606 ~~ld~~~-----------~~~~v~vi~aTn~~------~-----------------~ld~allr~gRf~~~i~~~~p~~~ 651 (802)
+.|+... ...++.+|+|+|.- + .|...++. |||.++.+++++..
T Consensus 317 ~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 317 EPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 7776532 12468899999862 1 47788888 99999999987654
No 306
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.86 E-value=1.5e-08 Score=113.68 Aligned_cols=195 Identities=22% Similarity=0.274 Sum_probs=134.5
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcE--E------E
Q 003691 197 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--F------L 268 (802)
Q Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~--v------~ 268 (802)
++++..|+++.|++...+.|+..+..- .-..++|+.||.|+||||+||.+|+.+++.- . -
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 567889999999999999999988751 1234689999999999999999999886542 0 0
Q ss_pred Eechhhhh----------hccchhHHHHHHHHHHHH----hcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhc
Q 003691 269 INGPEIMS----------KLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDG 334 (802)
Q Consensus 269 v~~~~l~~----------~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 334 (802)
..|..+.. .....+-..+|.+.+.+. ....-|++|||+|.|. ....+.|+..++.
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-----------~~afNALLKTLEE 145 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-----------KQAFNALLKTLEE 145 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-----------HHHHHHHhccccc
Confidence 11122211 111223455677777653 2345699999999874 3356777777775
Q ss_pred ccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccc-hhhHHHHhhcCCCchHHHHH
Q 003691 335 LKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAED-VDLERVAKDTHGYVGSDLAA 413 (802)
Q Consensus 335 ~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~-~~l~~la~~t~g~~~~dl~~ 413 (802)
- ...|++|.+|..++.+++.+.+ |+ ..+.+...+.+.-...|...+.+-.+..+ .-+..++...+| +.+|...
T Consensus 146 P--P~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDals 219 (515)
T COG2812 146 P--PSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALS 219 (515)
T ss_pred C--ccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHH
Confidence 3 3478888899999999998876 54 34567777888777777777665555433 345666666665 4567777
Q ss_pred HHHHHHH
Q 003691 414 LCTEAAL 420 (802)
Q Consensus 414 l~~~A~~ 420 (802)
++..+..
T Consensus 220 lLDq~i~ 226 (515)
T COG2812 220 LLDQAIA 226 (515)
T ss_pred HHHHHHH
Confidence 7766644
No 307
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=7.9e-08 Score=112.38 Aligned_cols=176 Identities=19% Similarity=0.285 Sum_probs=120.7
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 265 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 265 (802)
.++.+.+|++|.|++..++.|+.++... ..+..+|||||+|+|||++|+++|+.+.+.
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 4678899999999999999998888631 234569999999999999999999987531
Q ss_pred ---------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHH
Q 003691 266 ---------------FFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVS 326 (802)
Q Consensus 266 ---------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 326 (802)
++.+++.+ ......++.+...+.. ....+++|||+|.+.. ...+
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~n 139 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFN 139 (614)
T ss_pred cchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHH
Confidence 12222211 1123456666655532 2235999999998842 2356
Q ss_pred HHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhhHHHHhhcCC
Q 003691 327 QLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDLERVAKDTHG 405 (802)
Q Consensus 327 ~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g 405 (802)
.|+..|+.... ..++|.+|+.+..+-+.+++ |+ ..+++..++..+-...+...+....+. +...+..++..+.|
T Consensus 140 aLLK~LEepp~--~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 140 AFLKTLEEPPS--YAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHHHHHhCCCC--CeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 78888876433 44555566667888888887 54 558899999888887877665554443 22346677777655
No 308
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=7.8e-09 Score=119.84 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=28.4
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
++.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44567899999999999999999999999865
No 309
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.85 E-value=1.2e-09 Score=99.18 Aligned_cols=105 Identities=30% Similarity=0.417 Sum_probs=61.9
Q ss_pred eeeeecCCCCchhHHHHHHHHHhCCeEEEEeCc-chhh-hccCcc-----HH----HHHHHHHHHhhCCCeEEEEcccch
Q 003691 513 GVLFYGPPGCGKTLLAKAIANECQANFISVKGP-ELLT-MWFGES-----EA----NVREIFDKARQSAPCVLFFDELDS 581 (802)
Q Consensus 513 gill~GppGtGKT~lakala~~~~~~~i~v~~~-~l~~-~~vg~s-----e~----~i~~lf~~a~~~~p~il~iDEid~ 581 (802)
++||.|+||+|||++|+++|..++..|..|.+. +++- ...|.. .. .-.-+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 489999999999999999999999999888763 4431 111111 00 111222 14999999977
Q ss_pred hhhccCCCCCCCCCchHHHHHHHHHHhhccC---------CCCcEEEEEecCCCC-----CCCccccCCCCcc
Q 003691 582 IATQRGSSTGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRPD-----IIDPALLRPGRLD 640 (802)
Q Consensus 582 l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~~-----~ld~allr~gRf~ 640 (802)
. ..++.+.||..|..-. -.+.++||||-|..+ .|+.|++. ||-
T Consensus 74 a--------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 74 A--------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp S---------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred C--------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 4 4678899999987531 235689999999876 57888887 874
No 310
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.84 E-value=5.2e-08 Score=109.98 Aligned_cols=199 Identities=22% Similarity=0.292 Sum_probs=124.6
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHc---cccC--------------hhhHhh----hCCCCCcEEEEECCCCCcHHHHH
Q 003691 197 RLNEVGYDDVGGVRKQMAQIRELVEL---PLRH--------------PQLFKS----IGVKPPKGILLYGPPGSGKTLIA 255 (802)
Q Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~v~~---~l~~--------------~~~~~~----l~i~~~~~vLL~GppGtGKTtLa 255 (802)
++.+-.|.|+-|-+..-..+..+++. ...+ .++++. .+-.+.+-+||+||||-||||||
T Consensus 264 ky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLA 343 (877)
T KOG1969|consen 264 KYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLA 343 (877)
T ss_pred ccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHH
Confidence 45566788888888777777666652 0111 112211 11233455899999999999999
Q ss_pred HHHHHHhCCcEEEEechhhhhhccchhHHHHHHHHHHH--H--hcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHh
Q 003691 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA--E--KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTL 331 (802)
Q Consensus 256 r~la~~l~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a--~--~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ 331 (802)
+.+|+..|..++.||+++-.+ .....+++..+.+.- . ...|..|++||||-.. +..+..++.+
T Consensus 344 HViAkqaGYsVvEINASDeRt--~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-----------~~~Vdvilsl 410 (877)
T KOG1969|consen 344 HVIAKQAGYSVVEINASDERT--APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-----------RAAVDVILSL 410 (877)
T ss_pred HHHHHhcCceEEEeccccccc--HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc-----------HHHHHHHHHH
Confidence 999999999999999877432 112233333333321 1 2578999999999532 2334445554
Q ss_pred hhc-------ccC---------CC---cEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCcccc
Q 003691 332 MDG-------LKS---------RA---HVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAE 392 (802)
Q Consensus 332 ld~-------~~~---------~~---~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~ 392 (802)
+.. -+. +. .--||+.||+.. -|+|+-..-|...+.|..|......+-|+..+.+-.+..
T Consensus 411 v~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~ 488 (877)
T KOG1969|consen 411 VKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRA 488 (877)
T ss_pred HHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCC
Confidence 431 000 00 124677788753 588887667888899999998888888887776655433
Q ss_pred c-hhhHHHHhhcCCCchHH
Q 003691 393 D-VDLERVAKDTHGYVGSD 410 (802)
Q Consensus 393 ~-~~l~~la~~t~g~~~~d 410 (802)
+ ..+..|.+.+++-..+.
T Consensus 489 d~~aL~~L~el~~~DIRsC 507 (877)
T KOG1969|consen 489 DSKALNALCELTQNDIRSC 507 (877)
T ss_pred CHHHHHHHHHHhcchHHHH
Confidence 2 34566666666543333
No 311
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=1.5e-07 Score=102.79 Aligned_cols=183 Identities=16% Similarity=0.191 Sum_probs=116.9
Q ss_pred cCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc-------EEEE-
Q 003691 198 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------FFLI- 269 (802)
Q Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-------~v~v- 269 (802)
+.+..+++|.|++..++.+...+... .-+..+||+||+|+||||+|+.+|+.+... ....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 35668889999999999998887641 224569999999999999999999987541 1000
Q ss_pred ---ech---hh--------h--hhc--c-------chhHHHHHHHHHHHH----hcCCeEEEecccccccCCCCCCchhH
Q 003691 270 ---NGP---EI--------M--SKL--A-------GESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEV 320 (802)
Q Consensus 270 ---~~~---~l--------~--~~~--~-------g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~ 320 (802)
.|. .+ . ... . .-.-..++.+.+... .....|++|||+|.+..
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~--------- 155 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR--------- 155 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH---------
Confidence 111 11 0 000 0 001233444433322 23456999999998842
Q ss_pred HHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHH
Q 003691 321 ERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVA 400 (802)
Q Consensus 321 ~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la 400 (802)
...+.|+..++.... +.++|..++.++.+.+.+++ |+ ..+.+++|+.++-..+|........+ ++..+..++
T Consensus 156 --~aanaLLk~LEEpp~--~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~-~~~~~~~i~ 227 (351)
T PRK09112 156 --NAANAILKTLEEPPA--RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGS-DGEITEALL 227 (351)
T ss_pred --HHHHHHHHHHhcCCC--CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCC-CHHHHHHHH
Confidence 234668888886444 34444556778888899987 66 58999999999999998764322221 122345666
Q ss_pred hhcCCCchH
Q 003691 401 KDTHGYVGS 409 (802)
Q Consensus 401 ~~t~g~~~~ 409 (802)
..+.|-...
T Consensus 228 ~~s~G~pr~ 236 (351)
T PRK09112 228 QRSKGSVRK 236 (351)
T ss_pred HHcCCCHHH
Confidence 666655443
No 312
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=1.9e-08 Score=108.78 Aligned_cols=133 Identities=17% Similarity=0.217 Sum_probs=96.1
Q ss_pred CCCceeeeecCCCCchhHHHHHHHHHhCCe-------------------------EEEEeCcchh---------------
Q 003691 509 SPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------------------FISVKGPELL--------------- 548 (802)
Q Consensus 509 ~~~~gill~GppGtGKT~lakala~~~~~~-------------------------~i~v~~~~l~--------------- 548 (802)
+.+.++||+||+|+||+++|+++|..+... +..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 567789999999999999999999886321 2222211000
Q ss_pred ---hh----c-cCccHHHHHHHHHHH----hhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCc
Q 003691 549 ---TM----W-FGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKT 616 (802)
Q Consensus 549 ---~~----~-vg~se~~i~~lf~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~ 616 (802)
++ + -.-.-..|+.+.+.. ......|++||++|.+- ....|.||+.|+ ++..+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLE--EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------------VAAANALLKTLE--EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------------HHHHHHHHHHhc--CCCcC
Confidence 00 0 001124566655543 33445799999999973 446789999999 56778
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHH
Q 003691 617 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKAC 660 (802)
Q Consensus 617 v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~ 660 (802)
+++|.+|++++.|.|.+++ |+. .+.|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rcq-~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RCR-QFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cCE-EEEecCCCHHHHHHHHHHc
Confidence 8999999999999999998 994 8999999999988888753
No 313
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.82 E-value=9.6e-09 Score=122.05 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=28.4
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
+|.+.++..+.|+||+|||||||+++|++...
T Consensus 23 s~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~ 54 (635)
T PRK11147 23 ELHIEDNERVCLVGRNGAGKSTLMKILNGEVL 54 (635)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 45668899999999999999999999999864
No 314
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.82 E-value=9.3e-08 Score=107.89 Aligned_cols=207 Identities=21% Similarity=0.287 Sum_probs=139.0
Q ss_pred eeeeecCCCCchhHHHHHHHHHh----------CCeEEEEeCcchhhh----------ccCccH------HHHHHHHHHH
Q 003691 513 GVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLTM----------WFGESE------ANVREIFDKA 566 (802)
Q Consensus 513 gill~GppGtGKT~lakala~~~----------~~~~i~v~~~~l~~~----------~vg~se------~~i~~lf~~a 566 (802)
.+.+.|-||||||.++..+..++ .+.|+.|+|-.+.+. +.|+.. ..+..-|..+
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 48899999999999999998865 356888998766532 223331 2233344322
Q ss_pred -hhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCcccc-C-CCCcc-eE
Q 003691 567 -RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALL-R-PGRLD-QL 642 (802)
Q Consensus 567 -~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~all-r-~gRf~-~~ 642 (802)
....++|++|||.|.|+.. ...|+.-|+.+-- .+..+++||+..|..+....-+. | .+|++ ..
T Consensus 504 k~~~~~~VvLiDElD~Lvtr-----------~QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTR-----------SQDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCEEEEeccHHHHhcc-----------cHHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 2346799999999999853 2345544444322 34668999999999876443333 1 23776 58
Q ss_pred EEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCHH--HHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCccc
Q 003691 643 IYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGA--DITEVCQRACKYAIRENIEKDIERERRKMENPEAM 720 (802)
Q Consensus 643 i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg~--di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 720 (802)
|.|.+++.++..+|+...+.....-...-++.+|+.-...||. .-..+|++|...|-.+....
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~--------------- 635 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKG--------------- 635 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc---------------
Confidence 8999999999999999999877433333355566655556664 33468999998888776411
Q ss_pred ccccccccccccHHHHHHHHhhcCCCCCHH
Q 003691 721 EEDEVDDVDEIKAVHFEESMKYARRSVSDA 750 (802)
Q Consensus 721 ~~~~~~~~~~i~~~~f~~al~~~~~s~~~~ 750 (802)
..+....|+..||.+|+.++..+.-..
T Consensus 636 ---k~~~~q~v~~~~v~~Ai~em~~~~~~~ 662 (767)
T KOG1514|consen 636 ---KLAVSQLVGILHVMEAINEMLASPYIK 662 (767)
T ss_pred ---cccccceeehHHHHHHHHHHhhhhHHH
Confidence 012245799999999998876554433
No 315
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.82 E-value=4e-08 Score=113.23 Aligned_cols=163 Identities=18% Similarity=0.200 Sum_probs=97.6
Q ss_pred ccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe-EEEE---eCcchhhh----
Q 003691 479 IGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-FISV---KGPELLTM---- 550 (802)
Q Consensus 479 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~-~i~v---~~~~l~~~---- 550 (802)
|.|++.+|..+.-.+..... +..-....+....++||+|+||||||++|++++..+... |+.. ++..+...
T Consensus 205 i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 205 IYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred ccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 56777777666544322110 000011122333469999999999999999999987543 3321 11112110
Q ss_pred -ccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC-----------CCCcEE
Q 003691 551 -WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTVF 618 (802)
Q Consensus 551 -~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~ 618 (802)
..|+..-.-+.+ ..| ...++++||++.+- ......|+..|+... -..++.
T Consensus 284 ~~~g~~~~~~G~l-~~A---~~Gil~iDEi~~l~--------------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 284 PETREFTLEGGAL-VLA---DNGVCCIDEFDKMD--------------DSDRTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred cCcceEEecCccE-Eec---CCCEEEEechhhCC--------------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 011100000011 122 22499999999973 345666777775422 124688
Q ss_pred EEEecCCCC-------------CCCccccCCCCcceEE-EecCCCHHHHHHHHHHHhc
Q 003691 619 IIGATNRPD-------------IIDPALLRPGRLDQLI-YIPLPDEASRLQIFKACLR 662 (802)
Q Consensus 619 vi~aTn~~~-------------~ld~allr~gRf~~~i-~~~~p~~~~r~~Il~~~l~ 662 (802)
||||+|..+ .|++++++ |||.++ ..+.|+.+...+|.++.+.
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 999999753 58999998 999765 4578999999999988653
No 316
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.82 E-value=1.6e-07 Score=99.63 Aligned_cols=124 Identities=23% Similarity=0.329 Sum_probs=76.4
Q ss_pred CCCCceeeeecCCCCchhHHHHHHHHHhCC-eEEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhcc
Q 003691 508 MSPSKGVLFYGPPGCGKTLLAKAIANECQA-NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 586 (802)
Q Consensus 508 ~~~~~gill~GppGtGKT~lakala~~~~~-~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r 586 (802)
++....+-++|.+|||||||.+++...+.. .-|.+.|.++.. .+.+.++-+= ..-.++|=|-..++.+.-
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~----~~~~~mrplR-----~~mQvVFQDPygSLsPRm 380 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDG----LSRKEMRPLR-----RRMQVVFQDPYGSLSPRM 380 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccc----cChhhhhhhh-----hhceEEEeCCCCCCCccc
Confidence 344445999999999999999999998854 457777877643 3444443322 222488888777764421
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCC
Q 003691 587 GSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPI 666 (802)
Q Consensus 587 ~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~ 666 (802)
.+.+++.+ .| .|+=|.++..+|.+-....+++..+
T Consensus 381 -------------tV~qII~E------------------------GL--------~vh~~~ls~~eR~~rv~~aL~EVGL 415 (534)
T COG4172 381 -------------TVGQIIEE------------------------GL--------RVHEPKLSAAERDQRVIEALEEVGL 415 (534)
T ss_pred -------------CHHHHhhh------------------------hh--------hhcCCCCCHHHHHHHHHHHHHHcCC
Confidence 12222221 11 2344556667777777777777665
Q ss_pred CCccCHHHHHHHccCCCHHHHHH
Q 003691 667 SPDVDLSALARYTHGFSGADITE 689 (802)
Q Consensus 667 ~~~~~~~~la~~t~g~sg~di~~ 689 (802)
++ ....++...|||++-..
T Consensus 416 Dp----~~r~RYPhEFSGGQRQR 434 (534)
T COG4172 416 DP----ATRNRYPHEFSGGQRQR 434 (534)
T ss_pred Ch----hHhhcCCcccCcchhhH
Confidence 43 34555666788776553
No 317
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.82 E-value=8.8e-08 Score=104.64 Aligned_cols=156 Identities=22% Similarity=0.374 Sum_probs=105.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhC-----CcEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCC
Q 003691 238 PKGILLYGPPGSGKTLIARAVANETG-----AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPK 312 (802)
Q Consensus 238 ~~~vLL~GppGtGKTtLar~la~~l~-----~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 312 (802)
-..++||||.|+|||+|++++++... ..++++....++...+......-..-|.+-. .-.+++||+++++..+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 45699999999999999999998762 3567777766665544433333333444443 4568999999999766
Q ss_pred CCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC---CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccC-
Q 003691 313 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNM- 388 (802)
Q Consensus 313 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~l---d~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~- 388 (802)
.. ....+.+.+..+...++-+++.+-..|..+ .+.|++.......+.+.+|+.+.|..||+......
T Consensus 191 ~~---------~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 191 ER---------TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred hh---------HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcC
Confidence 32 235566666666666666666666666655 57787733345778999999999999999865443
Q ss_pred -ccccchhhHHHHhhcCC
Q 003691 389 -KLAEDVDLERVAKDTHG 405 (802)
Q Consensus 389 -~l~~~~~l~~la~~t~g 405 (802)
.+.++ .+..++.....
T Consensus 262 ~~i~~e-v~~~la~~~~~ 278 (408)
T COG0593 262 IEIPDE-VLEFLAKRLDR 278 (408)
T ss_pred CCCCHH-HHHHHHHHhhc
Confidence 34333 35566655443
No 318
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.80 E-value=1.6e-08 Score=112.27 Aligned_cols=135 Identities=19% Similarity=0.281 Sum_probs=81.5
Q ss_pred CCceeeeecCCCCchhHHHHHHHHHhCC--eEEEEeCc-chhhhccCcc-HHHH--HHHHHHHhhC---CCeEEEEcccc
Q 003691 510 PSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGP-ELLTMWFGES-EANV--REIFDKARQS---APCVLFFDELD 580 (802)
Q Consensus 510 ~~~gill~GppGtGKT~lakala~~~~~--~~i~v~~~-~l~~~~vg~s-e~~i--~~lf~~a~~~---~p~il~iDEid 580 (802)
...++||+||||||||++|++++...+. +|..+.+. ...+..+|.. -... ..-|...... ...++|+|||.
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ 117 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIW 117 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccc
Confidence 3456999999999999999999998753 34333221 0111222321 1110 1122221111 22499999997
Q ss_pred hhhhccCCCCCCCCCchHHHHHHHHHHhhccC--------CCCcEEEEEecCCCC---CCCccccCCCCcceEEEecCCC
Q 003691 581 SIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--------AKKTVFIIGATNRPD---IIDPALLRPGRLDQLIYIPLPD 649 (802)
Q Consensus 581 ~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--------~~~~v~vi~aTn~~~---~ld~allr~gRf~~~i~~~~p~ 649 (802)
.+ ...+.+.||..|+.-. .....++++|||... ...+|+.. ||...+.+|+|+
T Consensus 118 ra--------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~ 181 (498)
T PRK13531 118 KA--------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQ 181 (498)
T ss_pred cC--------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCC
Confidence 54 3678899999995321 112235555557432 23358887 998899999997
Q ss_pred -HHHHHHHHHHH
Q 003691 650 -EASRLQIFKAC 660 (802)
Q Consensus 650 -~~~r~~Il~~~ 660 (802)
.++-.+|+...
T Consensus 182 ~~~~e~~lL~~~ 193 (498)
T PRK13531 182 DKANFRSMLTSQ 193 (498)
T ss_pred chHHHHHHHHcc
Confidence 46667788754
No 319
>PRK09087 hypothetical protein; Validated
Probab=98.80 E-value=5.2e-08 Score=100.09 Aligned_cols=140 Identities=22% Similarity=0.300 Sum_probs=90.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCc
Q 003691 238 PKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTH 317 (802)
Q Consensus 238 ~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~ 317 (802)
...++|+||+|||||+|+++++...+.. +++..++.. .++..... .++++||++.+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~~----- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGS-----------DAANAAAE---GPVLIEDIDAGGFD----- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcch-----------HHHHhhhc---CeEEEECCCCCCCC-----
Confidence 3459999999999999999999876554 343322211 11111111 37899999976211
Q ss_pred hhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC---CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCcc-ccc
Q 003691 318 GEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKL-AED 393 (802)
Q Consensus 318 ~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~l---d~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~ 393 (802)
...|.+.++.+...+..++++++..|..+ .+.+++.......+++..|+.+.|.++++..++...+ .++
T Consensus 103 -------~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ 175 (226)
T PRK09087 103 -------ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDP 175 (226)
T ss_pred -------HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 13366666666565666777766655433 5667773334578899999999999999987765433 233
Q ss_pred hhhHHHHhhcCC
Q 003691 394 VDLERVAKDTHG 405 (802)
Q Consensus 394 ~~l~~la~~t~g 405 (802)
..+..++....+
T Consensus 176 ev~~~La~~~~r 187 (226)
T PRK09087 176 HVVYYLVSRMER 187 (226)
T ss_pred HHHHHHHHHhhh
Confidence 456777776664
No 320
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.80 E-value=2.3e-08 Score=109.30 Aligned_cols=128 Identities=30% Similarity=0.440 Sum_probs=87.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh--ccchhHHHH------------HHHHHHHHhcCCeEEE
Q 003691 237 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK--LAGESESNL------------RKAFEEAEKNAPSIIF 302 (802)
Q Consensus 237 ~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~~--~~g~~~~~l------------~~vf~~a~~~~p~il~ 302 (802)
.+.++||.||||||||+|++.+|..++.+++.++|..-+.. ..|...-.. +-+|.... ++++
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 47899999999999999999999999999999998543211 111111000 11111111 4999
Q ss_pred ecccccccCCCCCCchhHHHHHHHHHHHhhhc----------ccCCCcEEEEEecC-----CCCCCCHHhhccCCcceEE
Q 003691 303 IDELDSIAPKREKTHGEVERRIVSQLLTLMDG----------LKSRAHVIVMGATN-----RPNSIDPALRRFGRFDREI 367 (802)
Q Consensus 303 iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~----------~~~~~~vivI~~tn-----~~~~ld~al~r~~rf~~~i 367 (802)
+|||+...+ .+.+.|+..|+. +.-...+++++|.| ....+++++.+ ||...+
T Consensus 118 ~DEInra~p-----------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~ 184 (329)
T COG0714 118 LDEINRAPP-----------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRI 184 (329)
T ss_pred EeccccCCH-----------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEE
Confidence 999987643 355677777765 33446788888889 44567888887 887888
Q ss_pred EeCCCC-HHHHHHHH
Q 003691 368 DIGVPD-EVGRLEIL 381 (802)
Q Consensus 368 ~i~~P~-~~~R~~Il 381 (802)
.++.|+ ..+...++
T Consensus 185 ~v~yp~~~~e~~~i~ 199 (329)
T COG0714 185 YVDYPDSEEEERIIL 199 (329)
T ss_pred ecCCCCchHHHHHHH
Confidence 999994 44444444
No 321
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.79 E-value=1.9e-08 Score=117.01 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=27.8
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANET 262 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 262 (802)
++.+.+++.+.|+||+|||||||+++|++..
T Consensus 20 s~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 20 SFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3456789999999999999999999999985
No 322
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.79 E-value=7e-08 Score=106.46 Aligned_cols=141 Identities=24% Similarity=0.392 Sum_probs=84.3
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc-------EEEEec----
Q 003691 203 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------FFLING---- 271 (802)
Q Consensus 203 ~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-------~v~v~~---- 271 (802)
++++.+-+..++.+...+. .+++++|+||||||||++|+.+|..+... .+.+..
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 4455555666655544432 36789999999999999999999887431 122221
Q ss_pred hhhhhhcc-ch-h----HHHHHHHHHHHHh--cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhh----------
Q 003691 272 PEIMSKLA-GE-S----ESNLRKAFEEAEK--NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD---------- 333 (802)
Q Consensus 272 ~~l~~~~~-g~-~----~~~l~~vf~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld---------- 333 (802)
.+++..+. +. . ...+...++.|.. ..|.++||||++..-..+ +...++.+|+
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k----------iFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK----------VFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH----------hhhhhhhhccccccccccce
Confidence 22322221 10 0 1123334455544 357899999998754321 1222222222
Q ss_pred ----------cccCCCcEEEEEecCCCC----CCCHHhhccCCcceEEEeCC
Q 003691 334 ----------GLKSRAHVIVMGATNRPN----SIDPALRRFGRFDREIDIGV 371 (802)
Q Consensus 334 ----------~~~~~~~vivI~~tn~~~----~ld~al~r~~rf~~~i~i~~ 371 (802)
.+....++.||||+|..+ .+|.|++| ||.. +++.+
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIEP 357 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhhe-EEecC
Confidence 233446899999999887 78999999 7743 44543
No 323
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.79 E-value=2.2e-08 Score=97.47 Aligned_cols=134 Identities=25% Similarity=0.364 Sum_probs=90.9
Q ss_pred ccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhC-----------------------C
Q 003691 481 GLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----------------------A 537 (802)
Q Consensus 481 g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~-----------------------~ 537 (802)
|++.+.+.|...+.. -+.+..+||+||+|+||+++|.++|..+- .
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 566777777766542 24566799999999999999999998862 1
Q ss_pred eEEEEeCcchhhhccCccHHHHHHHHHHHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCC
Q 003691 538 NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNA 613 (802)
Q Consensus 538 ~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~ 613 (802)
+++.++..+-.. .-....++.+.+.... ....|++|||+|.+- ....|.||+.|+. +
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------------~~a~NaLLK~LEe--p 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------------EEAQNALLKTLEE--P 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHS--T
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------------HHHHHHHHHHhcC--C
Confidence 244443332100 0123566766666543 346799999999973 5678999999994 5
Q ss_pred CCcEEEEEecCCCCCCCccccCCCCcceEEEecCC
Q 003691 614 KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 648 (802)
Q Consensus 614 ~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p 648 (802)
..++++|.+|+.++.|-|.+++ |+. .+.|++.
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TSE-EEEE---
T ss_pred CCCEEEEEEECChHHChHHHHh--hce-EEecCCC
Confidence 6688999999999999999998 885 7777654
No 324
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.78 E-value=1.3e-08 Score=118.15 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=28.1
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
++.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 25 s~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 56 (510)
T PRK09700 25 NLTVYPGEIHALLGENGAGKSTLMKVLSGIHE 56 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC
Confidence 44567899999999999999999999998763
No 325
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.78 E-value=7.6e-08 Score=112.37 Aligned_cols=135 Identities=20% Similarity=0.263 Sum_probs=91.8
Q ss_pred ceeeeecCCCCchhHHHHHHHHHhCC--eEEEEeCcchhhhccCccH--HHHH---HHHHH--HhhCCCeEEEEcccchh
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESE--ANVR---EIFDK--ARQSAPCVLFFDELDSI 582 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~~~--~~i~v~~~~l~~~~vg~se--~~i~---~lf~~--a~~~~p~il~iDEid~l 582 (802)
.++||.|+||||||++|++++..+.. +|+.+.........+|... ..+. ..|+. .......+||+|||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 46999999999999999999998864 5887764322233333210 0000 00100 00011249999999997
Q ss_pred hhccCCCCCCCCCchHHHHHHHHHHhhccC-----------CCCcEEEEEecCCCC---CCCccccCCCCcceEEEec-C
Q 003691 583 ATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD---IIDPALLRPGRLDQLIYIP-L 647 (802)
Q Consensus 583 ~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~~---~ld~allr~gRf~~~i~~~-~ 647 (802)
- ..+++.|+..|+... ...++.||+|+|..+ .|.++++. ||+.++.+. +
T Consensus 97 ~--------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~ 160 (589)
T TIGR02031 97 D--------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDV 160 (589)
T ss_pred C--------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCC
Confidence 3 567788888887432 123688999999875 68889998 999888776 5
Q ss_pred CCHHHHHHHHHHHhc
Q 003691 648 PDEASRLQIFKACLR 662 (802)
Q Consensus 648 p~~~~r~~Il~~~l~ 662 (802)
|+.++|.+|++..+.
T Consensus 161 ~~~~er~eil~~~~~ 175 (589)
T TIGR02031 161 ASQDLRVEIVRRERC 175 (589)
T ss_pred CCHHHHHHHHHHHHH
Confidence 677889999988763
No 326
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.77 E-value=2.5e-08 Score=97.70 Aligned_cols=112 Identities=24% Similarity=0.351 Sum_probs=72.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhCC----cEEEEechhhhhhccchhHHHHHHHHHH----HHhcCCeEEEeccccc
Q 003691 237 PPKGILLYGPPGSGKTLIARAVANETGA----FFFLINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDELDS 308 (802)
Q Consensus 237 ~~~~vLL~GppGtGKTtLar~la~~l~~----~~v~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~il~iDEid~ 308 (802)
|-..+||+||+|||||.+|++||..+.. +++.++++++.... +....+...+.. .......|+|+||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4467999999999999999999999995 89999998876510 111111111111 1111123999999999
Q ss_pred ccCCCCCCchhHHHHHHHHHHHhhhccc---------CCCcEEEEEecCCC
Q 003691 309 IAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVIVMGATNRP 350 (802)
Q Consensus 309 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~vivI~~tn~~ 350 (802)
+.+......+.....+.+.|++.+++-. .-.++++|+|+|--
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 9886333334444567788888887421 12467888888753
No 327
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.76 E-value=1.7e-08 Score=116.94 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=28.1
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
++.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 31 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 62 (510)
T PRK15439 31 DFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP 62 (510)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34567889999999999999999999998763
No 328
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=2.6e-08 Score=116.17 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=28.5
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
++.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 21 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 52 (530)
T PRK15064 21 SVKFGGGNRYGLIGANGCGKSTFMKILGGDLE 52 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45678899999999999999999999999763
No 329
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.75 E-value=2.1e-08 Score=115.78 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=28.1
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
++.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 18 s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 49 (491)
T PRK10982 18 NLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ 49 (491)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 44567899999999999999999999998763
No 330
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.75 E-value=1.9e-08 Score=116.46 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=28.2
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
++.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 24 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~ 55 (501)
T PRK10762 24 ALNVYPGRVMALVGENGAGKSTMMKVLTGIYT 55 (501)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44567899999999999999999999999863
No 331
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.75 E-value=1.1e-07 Score=110.58 Aligned_cols=202 Identities=13% Similarity=0.151 Sum_probs=117.5
Q ss_pred cccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEE-eCc---ch
Q 003691 472 PNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV-KGP---EL 547 (802)
Q Consensus 472 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v-~~~---~l 547 (802)
.+.+++++.|.++..+.+...+.... ++..+...++|+|||||||||+++++|++++..++.. +.. ..
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 34577888888887777776654211 1223334599999999999999999999988655331 111 00
Q ss_pred hhhc------------cCccHHHHHHHHHHHhh----------CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHH
Q 003691 548 LTMW------------FGESEANVREIFDKARQ----------SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLL 605 (802)
Q Consensus 548 ~~~~------------vg~se~~i~~lf~~a~~----------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL 605 (802)
...| +.......+.++..+.. ....|||+|||+.++.. ..+.+..+|
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----------~~~~lq~lL 219 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----------DTRALHEIL 219 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----------hHHHHHHHH
Confidence 0000 01122344555555542 24579999999987531 122455555
Q ss_pred H-HhhccCCCCcEEEEEecC-CCC--------------CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCC--CC
Q 003691 606 T-EMDGMNAKKTVFIIGATN-RPD--------------IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSP--IS 667 (802)
Q Consensus 606 ~-~ld~~~~~~~v~vi~aTn-~~~--------------~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~--~~ 667 (802)
. .... ...+.+|++++ .|. .|.++++..-|.. +|.|++.+.....+.|+..+.+.. ..
T Consensus 220 r~~~~e---~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~~~~ 295 (637)
T TIGR00602 220 RWKYVS---IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAKKNG 295 (637)
T ss_pred HHHhhc---CCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhhccc
Confidence 5 2221 22333333333 121 1346777422443 799999999998888877775421 11
Q ss_pred ------CccCHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q 003691 668 ------PDVDLSALARYTHGFSGADITEVCQRACKYAIR 700 (802)
Q Consensus 668 ------~~~~~~~la~~t~g~sg~di~~~~~~a~~~a~~ 700 (802)
....+..|+. .+++||+.++......+..
T Consensus 296 ~~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~~~ 330 (637)
T TIGR00602 296 EKIKVPKKTSVELLCQ----GCSGDIRSAINSLQFSSSK 330 (637)
T ss_pred cccccCCHHHHHHHHH----hCCChHHHHHHHHHHHHhc
Confidence 1123445555 4567999888777766554
No 332
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.75 E-value=2e-08 Score=116.11 Aligned_cols=32 Identities=34% Similarity=0.485 Sum_probs=28.4
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
++.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 23 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~ 54 (490)
T PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELP 54 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45668899999999999999999999999763
No 333
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.75 E-value=2.3e-08 Score=116.56 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=28.5
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
+|.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 29 sl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 29 SLQIEAGETLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 44567899999999999999999999999875
No 334
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.74 E-value=1.5e-07 Score=109.23 Aligned_cols=191 Identities=14% Similarity=0.180 Sum_probs=108.0
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEE-Eechh-
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFL-INGPE- 273 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~-v~~~~- 273 (802)
+++.+..++++.|.++.++.++.++... .++..+++.++|+|||||||||+++++|++++..++. ++...
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~ 147 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLP 147 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 4678899999999999999999887631 1233556679999999999999999999998754322 11110
Q ss_pred --hh----------hh--ccchhHHHHHHHHHHHHh----------cCCeEEEecccccccCCCCCCchhHHHHHHHHHH
Q 003691 274 --IM----------SK--LAGESESNLRKAFEEAEK----------NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLL 329 (802)
Q Consensus 274 --l~----------~~--~~g~~~~~l~~vf~~a~~----------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 329 (802)
.. .. ......+.++.++..+.. ....||||||++.+.... ......++
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~--------~~~lq~lL 219 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD--------TRALHEIL 219 (637)
T ss_pred cccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh--------HHHHHHHH
Confidence 00 00 001123344555555432 345799999999776421 11223333
Q ss_pred H-hhhcccCCCcEEEEEecCCCC--------C------CCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccC------
Q 003691 330 T-LMDGLKSRAHVIVMGATNRPN--------S------IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNM------ 388 (802)
Q Consensus 330 ~-~ld~~~~~~~vivI~~tn~~~--------~------ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~------ 388 (802)
. .... ..+..+++| +|..+. . +.++++...|. ..|.|.+.........|...+...
T Consensus 220 r~~~~e-~~~~pLI~I-~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 220 RWKYVS-IGRCPLVFI-ITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred HHHhhc-CCCceEEEE-ecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 3 2211 122233333 232221 0 22556532233 468999999888665555444321
Q ss_pred --ccccchhhHHHHhhcCC
Q 003691 389 --KLAEDVDLERVAKDTHG 405 (802)
Q Consensus 389 --~l~~~~~l~~la~~t~g 405 (802)
.+.....+..++....|
T Consensus 297 ~~~~p~~~~l~~I~~~s~G 315 (637)
T TIGR00602 297 KIKVPKKTSVELLCQGCSG 315 (637)
T ss_pred ccccCCHHHHHHHHHhCCC
Confidence 11122345666665554
No 335
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=1.2e-07 Score=102.01 Aligned_cols=129 Identities=20% Similarity=0.313 Sum_probs=94.4
Q ss_pred CCCceeeeecCCCCchhHHHHHHHHHhCC------------------------eEEEEeCcchhhhccCccHHHHHHHHH
Q 003691 509 SPSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFD 564 (802)
Q Consensus 509 ~~~~gill~GppGtGKT~lakala~~~~~------------------------~~i~v~~~~l~~~~vg~se~~i~~lf~ 564 (802)
+.+.++||+||.|+||+++|+++|..+-. +++.+...+ ++.+ .-..||++-+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHH
Confidence 44567999999999999999999988622 233332211 1111 2345555444
Q ss_pred H----HhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcc
Q 003691 565 K----ARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLD 640 (802)
Q Consensus 565 ~----a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~ 640 (802)
. +......|++||++|.+- ....|.||+.|+. +..++++|.+|+.++.|-|.+++ |+.
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC~ 159 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLT--------------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RCQ 159 (325)
T ss_pred HHhhccccCCceEEEEechhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hce
Confidence 3 444556799999999973 4467999999994 66778888899999999999987 986
Q ss_pred eEEEecCCCHHHHHHHHHHH
Q 003691 641 QLIYIPLPDEASRLQIFKAC 660 (802)
Q Consensus 641 ~~i~~~~p~~~~r~~Il~~~ 660 (802)
.+.|++|+.++..+.+...
T Consensus 160 -~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 160 -TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred -EEeCCCCCHHHHHHHHHHH
Confidence 8899999998887777654
No 336
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.74 E-value=9.2e-08 Score=103.55 Aligned_cols=156 Identities=21% Similarity=0.275 Sum_probs=95.5
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEe-----------
Q 003691 202 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLIN----------- 270 (802)
Q Consensus 202 ~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~----------- 270 (802)
.|..|.|+++.+..+.-.+-. ....+++|.|+||+|||||++++++.+...-..++
T Consensus 2 pf~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 578899999988776433322 12467999999999999999999988743111111
Q ss_pred -----chhh----------------hhhccchhHHHH-HH-HHHHH-------------HhcCCeEEEecccccccCCCC
Q 003691 271 -----GPEI----------------MSKLAGESESNL-RK-AFEEA-------------EKNAPSIIFIDELDSIAPKRE 314 (802)
Q Consensus 271 -----~~~l----------------~~~~~g~~~~~l-~~-vf~~a-------------~~~~p~il~iDEid~l~~~~~ 314 (802)
|... .....+.++..+ +. .+... ......+||+||++.+.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~--- 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED--- 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH---
Confidence 1100 000000011110 00 01111 011236999999998742
Q ss_pred CCchhHHHHHHHHHHHhhhccc-----------CCCcEEEEEecCCCC-CCCHHhhccCCcceEEEeCCCCH-HHHHHHH
Q 003691 315 KTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVMGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLEIL 381 (802)
Q Consensus 315 ~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~vivI~~tn~~~-~ld~al~r~~rf~~~i~i~~P~~-~~R~~Il 381 (802)
.+...|+..|+.-. ...+++++++.|..+ .+.+++.. ||...+.++.|.. ++|.+|+
T Consensus 146 --------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL 215 (337)
T TIGR02030 146 --------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIV 215 (337)
T ss_pred --------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHH
Confidence 34556666664311 124688888888655 67888887 8998999999876 8888998
Q ss_pred HH
Q 003691 382 RI 383 (802)
Q Consensus 382 ~~ 383 (802)
+.
T Consensus 216 ~~ 217 (337)
T TIGR02030 216 ER 217 (337)
T ss_pred Hh
Confidence 75
No 337
>PLN03073 ABC transporter F family; Provisional
Probab=98.73 E-value=3.1e-08 Score=118.04 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=27.0
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHH
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANE 261 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~ 261 (802)
+|.+.++..+.|+||+|||||||+++|++.
T Consensus 197 sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 197 SVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 456788999999999999999999999974
No 338
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.73 E-value=5e-07 Score=94.46 Aligned_cols=61 Identities=38% Similarity=0.651 Sum_probs=47.3
Q ss_pred ccccChHHHHHH---HHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC--CcEEEEechhhh
Q 003691 204 DDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFLINGPEIM 275 (802)
Q Consensus 204 ~~i~G~~~~~~~---l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~--~~~v~v~~~~l~ 275 (802)
+.++|+.++-+. +.++++. |-..+++||+.||||||||.||-.+|+++| .+|+.+++++++
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~-----------gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiY 104 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQ-----------GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIY 104 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHh-----------CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceee
Confidence 457888777655 3444432 445689999999999999999999999997 568888887763
No 339
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.72 E-value=8.9e-08 Score=103.58 Aligned_cols=160 Identities=22% Similarity=0.350 Sum_probs=100.1
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEE----e----
Q 003691 199 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLI----N---- 270 (802)
Q Consensus 199 ~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v----~---- 270 (802)
....|++|.|+++.+..|.-....| ...+|||.|++||||||++|+++..+...-+.- +
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 4568999999999888876554332 224799999999999999999988764211000 0
Q ss_pred chh-----hhhhc-------------------cchhHHHH------HHHHHHHH---------hcCCeEEEecccccccC
Q 003691 271 GPE-----IMSKL-------------------AGESESNL------RKAFEEAE---------KNAPSIIFIDELDSIAP 311 (802)
Q Consensus 271 ~~~-----l~~~~-------------------~g~~~~~l------~~vf~~a~---------~~~p~il~iDEid~l~~ 311 (802)
.++ ..+.. .+.++..+ ...|.... .....+||+||++.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 001 00000 01111111 11111111 11236999999998753
Q ss_pred CCCCCchhHHHHHHHHHHHhhhcc-----------cCCCcEEEEEecCCCC-CCCHHhhccCCcceEEEeCCCC-HHHHH
Q 003691 312 KREKTHGEVERRIVSQLLTLMDGL-----------KSRAHVIVMGATNRPN-SIDPALRRFGRFDREIDIGVPD-EVGRL 378 (802)
Q Consensus 312 ~~~~~~~~~~~~v~~~Ll~~ld~~-----------~~~~~vivI~~tn~~~-~ld~al~r~~rf~~~i~i~~P~-~~~R~ 378 (802)
.+...|+..|+.- ....+++++++.|..+ .+.+++.. ||...+.+..|. .+.+.
T Consensus 159 -----------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 159 -----------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRV 225 (350)
T ss_pred -----------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHH
Confidence 2445566666431 1234688888888665 58888877 899999999997 58999
Q ss_pred HHHHHH
Q 003691 379 EILRIH 384 (802)
Q Consensus 379 ~Il~~~ 384 (802)
+|++..
T Consensus 226 ~il~~~ 231 (350)
T CHL00081 226 KIVEQR 231 (350)
T ss_pred HHHHhh
Confidence 999753
No 340
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.72 E-value=9.2e-08 Score=94.13 Aligned_cols=136 Identities=18% Similarity=0.267 Sum_probs=86.5
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh-CC----cEEEEe
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-GA----FFFLIN 270 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l-~~----~~v~v~ 270 (802)
+++.+..+.||+|.++.++++.-+..- ..-.+++|.|||||||||-+.+||.++ |. .++.+|
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 467888999999999999988766542 123479999999999999999999886 32 246666
Q ss_pred chhhhhhccchhHHHHHHHHHHHHh---cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEec
Q 003691 271 GPEIMSKLAGESESNLRKAFEEAEK---NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGAT 347 (802)
Q Consensus 271 ~~~l~~~~~g~~~~~l~~vf~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~t 347 (802)
.++-.+ ......+++..-|.-.. ..-.|+++||.|++... ...+|...|+-+....++. .+|
T Consensus 86 ASdeRG--IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g-----------AQQAlRRtMEiyS~ttRFa--laC 150 (333)
T KOG0991|consen 86 ASDERG--IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG-----------AQQALRRTMEIYSNTTRFA--LAC 150 (333)
T ss_pred Cccccc--cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH-----------HHHHHHHHHHHHcccchhh--hhh
Confidence 654221 11112223322222111 12259999999987422 2345556666555544444 467
Q ss_pred CCCCCCCHHhhc
Q 003691 348 NRPNSIDPALRR 359 (802)
Q Consensus 348 n~~~~ld~al~r 359 (802)
|..+.+-+.+.+
T Consensus 151 N~s~KIiEPIQS 162 (333)
T KOG0991|consen 151 NQSEKIIEPIQS 162 (333)
T ss_pred cchhhhhhhHHh
Confidence 877777666655
No 341
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.71 E-value=9.3e-08 Score=103.94 Aligned_cols=169 Identities=21% Similarity=0.290 Sum_probs=100.9
Q ss_pred CceeeeecCCCCchhHHHHHHHHHhC---CeEEEEeCcchhhhc-----cCccH-------HHHHHHHHHHhhCCCeEEE
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMW-----FGESE-------ANVREIFDKARQSAPCVLF 575 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~~~-----vg~se-------~~i~~lf~~a~~~~p~il~ 575 (802)
...|||+|++||||+++|+++..... .+|+.|+|..+.... +|... ..-...|+.|. ...||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~ 98 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERAD---GGTLF 98 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCC---CCEEE
Confidence 34599999999999999999987764 689999998653211 11110 00111244443 35999
Q ss_pred EcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC---------CCCcEEEEEecCCC-------CCCCccccCCCCc
Q 003691 576 FDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN---------AKKTVFIIGATNRP-------DIIDPALLRPGRL 639 (802)
Q Consensus 576 iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~---------~~~~v~vi~aTn~~-------~~ld~allr~gRf 639 (802)
||||+.+- ..+...|+..|+... ...++-||++||.. ..+.+.|.. ||
T Consensus 99 Ldei~~L~--------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl 162 (329)
T TIGR02974 99 LDELATAS--------------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RL 162 (329)
T ss_pred eCChHhCC--------------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hh
Confidence 99999973 446677777776432 12357889999864 124455555 66
Q ss_pred c-eEEEecCCC--HHHHHHHHHHHhcc----CCCC--CccCH---HHHHHHccCCCHHHHHHHHHHHHHHH
Q 003691 640 D-QLIYIPLPD--EASRLQIFKACLRK----SPIS--PDVDL---SALARYTHGFSGADITEVCQRACKYA 698 (802)
Q Consensus 640 ~-~~i~~~~p~--~~~r~~Il~~~l~~----~~~~--~~~~~---~~la~~t~g~sg~di~~~~~~a~~~a 698 (802)
. ..|.+|+.. .++...+++.++.+ .... ..++- ..|..+.=--+-++|++++++|+..+
T Consensus 163 ~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 163 AFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred cchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 4 456666654 24444555555432 2211 12333 33333221124578888998888765
No 342
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.71 E-value=1.2e-07 Score=101.89 Aligned_cols=161 Identities=21% Similarity=0.258 Sum_probs=103.4
Q ss_pred cccccchhhhhhhhhhcCcCCChhhhhhccCC-CCceeeeecCCCCchhHHHHHHHHHhCC-------eEEEEeC----c
Q 003691 478 DIGGLDNVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKG----P 545 (802)
Q Consensus 478 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~-~~~gill~GppGtGKT~lakala~~~~~-------~~i~v~~----~ 545 (802)
++.|+++.+.++.+.+.... .|.. ..+.++|+|||||||||||++|++.++. +++.+++ +
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 79999999888876654321 1222 3456899999999999999999999965 7888877 4
Q ss_pred chhhhccCccHHHHHHHHHHHh----------------------------------------------------------
Q 003691 546 ELLTMWFGESEANVREIFDKAR---------------------------------------------------------- 567 (802)
Q Consensus 546 ~l~~~~vg~se~~i~~lf~~a~---------------------------------------------------------- 567 (802)
.+....++--....+..|....
T Consensus 124 p~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi 203 (361)
T smart00763 124 PMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDI 203 (361)
T ss_pred CCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccH
Confidence 4332222222222222221110
Q ss_pred ----------------hC--------------CCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC----C
Q 003691 568 ----------------QS--------------APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----A 613 (802)
Q Consensus 568 ----------------~~--------------~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----~ 613 (802)
.. ...|+-|+|+.+ ....+++.||+.++... +
T Consensus 204 ~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K--------------~~~~~l~~LL~~~qE~~v~~~~ 269 (361)
T smart00763 204 SELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFK--------------ADIKFLHPLLTATQEGNIKGTG 269 (361)
T ss_pred HHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhc--------------CCHHHHHHHhhhhhcceEecCC
Confidence 00 012444444433 23568888998887532 1
Q ss_pred -----CCcEEEEEecCCCC-------CCCccccCCCCcceEEEecCC-CHHHHHHHHHHHhcc
Q 003691 614 -----KKTVFIIGATNRPD-------IIDPALLRPGRLDQLIYIPLP-DEASRLQIFKACLRK 663 (802)
Q Consensus 614 -----~~~v~vi~aTn~~~-------~ld~allr~gRf~~~i~~~~p-~~~~r~~Il~~~l~~ 663 (802)
.-..+||++||..+ ...+|+++ |+. .+++|.| +..+-.+|.+..+.+
T Consensus 270 ~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 270 GFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred cccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 12368999999873 55789998 998 8899866 567778888887754
No 343
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.71 E-value=1.9e-07 Score=93.43 Aligned_cols=148 Identities=18% Similarity=0.200 Sum_probs=92.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhCCc--------EEEEechhhhh----------hcc-chhHHHHHHHHHHHHh--
Q 003691 237 PPKGILLYGPPGSGKTLIARAVANETGAF--------FFLINGPEIMS----------KLA-GESESNLRKAFEEAEK-- 295 (802)
Q Consensus 237 ~~~~vLL~GppGtGKTtLar~la~~l~~~--------~v~v~~~~l~~----------~~~-g~~~~~l~~vf~~a~~-- 295 (802)
.+..+||+||+|+|||++++.++..+... ....+|..+.. ... .-..+.++.+.+.+..
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 34679999999999999999999987432 00000110000 000 0123456666665543
Q ss_pred --cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCC
Q 003691 296 --NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPD 373 (802)
Q Consensus 296 --~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~ 373 (802)
....+++|||+|.+.. ...+.|+..|+.... ...+|.+++.+..+.+++++ |+ ..+.+.+|+
T Consensus 93 ~~~~~kviiide~~~l~~-----------~~~~~Ll~~le~~~~--~~~~il~~~~~~~l~~~i~s--r~-~~~~~~~~~ 156 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNE-----------AAANALLKTLEEPPP--NTLFILITPSPEKLLPTIRS--RC-QVLPFPPLS 156 (188)
T ss_pred ccCCeEEEEEechhhhCH-----------HHHHHHHHHhcCCCC--CeEEEEEECChHhChHHHHh--hc-EEeeCCCCC
Confidence 3456999999988743 234567888876433 34455556677889999987 55 578999999
Q ss_pred HHHHHHHHHHHhccCccccchhhHHHHhhcCC
Q 003691 374 EVGRLEILRIHTKNMKLAEDVDLERVAKDTHG 405 (802)
Q Consensus 374 ~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g 405 (802)
..+..+++... .+ ++..+..++..+.|
T Consensus 157 ~~~~~~~l~~~----gi-~~~~~~~i~~~~~g 183 (188)
T TIGR00678 157 EEALLQWLIRQ----GI-SEEAAELLLALAGG 183 (188)
T ss_pred HHHHHHHHHHc----CC-CHHHHHHHHHHcCC
Confidence 99988888754 22 22334555555444
No 344
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=4.4e-07 Score=98.46 Aligned_cols=152 Identities=13% Similarity=0.178 Sum_probs=103.3
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--------EEEEechh
Q 003691 202 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--------FFLINGPE 273 (802)
Q Consensus 202 ~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--------~v~v~~~~ 273 (802)
+|++|.|++..++.++..+... ..+..+||+||+|+|||++|+.+|+.+-+. +..+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-
Confidence 5889999999999998887531 234578999999999999999999976321 2222211
Q ss_pred hhhhccchhHHHHHHHHHHH----HhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCC
Q 003691 274 IMSKLAGESESNLRKAFEEA----EKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR 349 (802)
Q Consensus 274 l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~ 349 (802)
.+. .-.-..++.+.+.+ ......|++||++|.+. ....+.|+..+++... .+++|.+|+.
T Consensus 69 -~~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-----------~~a~naLLK~LEepp~--~t~~il~~~~ 132 (313)
T PRK05564 69 -NKK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-----------EQAQNAFLKTIEEPPK--GVFIILLCEN 132 (313)
T ss_pred -cCC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC-----------HHHHHHHHHHhcCCCC--CeEEEEEeCC
Confidence 001 11223466665543 23345699999988763 2345678888886433 4455555577
Q ss_pred CCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHh
Q 003691 350 PNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHT 385 (802)
Q Consensus 350 ~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~ 385 (802)
++.+.+.+++ |. ..+.+..|+.++-...+....
T Consensus 133 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 133 LEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred hHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 8899999988 55 578899999888877776443
No 345
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.70 E-value=8.5e-08 Score=94.36 Aligned_cols=183 Identities=19% Similarity=0.248 Sum_probs=107.6
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCC-----eEEEEeCcch
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPEL 547 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~-----~~i~v~~~~l 547 (802)
+..+.||+|.++..+.|.-.... | .-.++++.|||||||||.+.++|+++-. ..+.++.++-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~-----------g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKE-----------G--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHc-----------C--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 34578899999888877654332 1 1236999999999999999999998732 3567777664
Q ss_pred hhhccCccHHHHHHHHHHHhh-CCC---eEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEec
Q 003691 548 LTMWFGESEANVREIFDKARQ-SAP---CVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGAT 623 (802)
Q Consensus 548 ~~~~vg~se~~i~~lf~~a~~-~~p---~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aT 623 (802)
.+- ..-++--+.|..-+- .+| .|+++||+|++-. .....|-+.|+-+.. ..-+..++
T Consensus 90 RGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~--------------gAQQAlRRtMEiyS~--ttRFalaC 150 (333)
T KOG0991|consen 90 RGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA--------------GAQQALRRTMEIYSN--TTRFALAC 150 (333)
T ss_pred ccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh--------------HHHHHHHHHHHHHcc--cchhhhhh
Confidence 321 122333344533322 222 5999999999732 223444455554433 23456677
Q ss_pred CCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHh--ccCCCCCccCHHHHHHHccCCCHHHHHHHHHHHH
Q 003691 624 NRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACL--RKSPISPDVDLSALARYTHGFSGADITEVCQRAC 695 (802)
Q Consensus 624 n~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l--~~~~~~~~~~~~~la~~t~g~sg~di~~~~~~a~ 695 (802)
|..+.|-+.+.+ |+- ++.|...+.++.+.-+.... ++.+..++ .++.+...++ +|.++.++...
T Consensus 151 N~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~d-gLeaiifta~----GDMRQalNnLQ 216 (333)
T KOG0991|consen 151 NQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDD-GLEAIIFTAQ----GDMRQALNNLQ 216 (333)
T ss_pred cchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcc-hHHHhhhhcc----chHHHHHHHHH
Confidence 887777666665 665 44444455544333333222 34444433 3566655444 36666655543
No 346
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=5.8e-07 Score=98.73 Aligned_cols=180 Identities=17% Similarity=0.221 Sum_probs=115.8
Q ss_pred cCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcE-----------
Q 003691 198 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF----------- 266 (802)
Q Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~----------- 266 (802)
..+..+++|.|++..++.|.+.+... .-+..+||+||+|+||+++|.++|+.+-..-
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 35668899999999999998887641 2355799999999999999999998873210
Q ss_pred --EEEe--ch-----------hhh--hh---ccc------hhHHHHHHHHHHHH----hcCCeEEEecccccccCCCCCC
Q 003691 267 --FLIN--GP-----------EIM--SK---LAG------ESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKT 316 (802)
Q Consensus 267 --v~v~--~~-----------~l~--~~---~~g------~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~ 316 (802)
+.+. |+ ++. .. ..+ -.-..+|.+.+.+. ...+.|++|||+|.+-
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------ 154 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------ 154 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC------
Confidence 0000 10 100 00 000 01234555555432 3467899999999773
Q ss_pred chhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhh
Q 003691 317 HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDL 396 (802)
Q Consensus 317 ~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l 396 (802)
....+.|+..++... ...++|.+|+.++.+.+.+++ |+ ..+.++.|+.++-.++|...... ..+..+
T Consensus 155 -----~~aanaLLK~LEepp--~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 155 -----ANAANALLKVLEEPP--ARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred -----HHHHHHHHHHHhcCC--CCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 234567888887543 345666688888888888877 65 67899999999988888754311 111122
Q ss_pred HHHHhhcCCCch
Q 003691 397 ERVAKDTHGYVG 408 (802)
Q Consensus 397 ~~la~~t~g~~~ 408 (802)
..++..+.|-.+
T Consensus 222 ~~l~~~s~Gsp~ 233 (365)
T PRK07471 222 AALAALAEGSVG 233 (365)
T ss_pred HHHHHHcCCCHH
Confidence 455556665444
No 347
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=1.4e-07 Score=102.50 Aligned_cols=150 Identities=18% Similarity=0.271 Sum_probs=101.6
Q ss_pred CCCceeeeecCCCCchhHHHHHHHHHhCC------------------------eEEEEeCcch-hhhccCccHHHHHHHH
Q 003691 509 SPSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPEL-LTMWFGESEANVREIF 563 (802)
Q Consensus 509 ~~~~gill~GppGtGKT~lakala~~~~~------------------------~~i~v~~~~l-~~~~vg~se~~i~~lf 563 (802)
+.+..+||+||+|+||+++|.++|..+-. ++..+....- .+-.+.+....+..+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 45667999999999999999999988621 2333322110 0011222222333344
Q ss_pred HHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEE
Q 003691 564 DKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLI 643 (802)
Q Consensus 564 ~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i 643 (802)
..+......|++||++|.+- ....|.||+.|+ ++..+.++|..|+.++.|-|.+++ |+. .+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq-~~ 162 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT--------------DAAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR-LH 162 (334)
T ss_pred hccccCCceEEEEcchHhhC--------------HHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-cc
Confidence 44555566899999999983 446799999999 466788999999999999999998 998 68
Q ss_pred EecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccC
Q 003691 644 YIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHG 681 (802)
Q Consensus 644 ~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g 681 (802)
.|++|+.++..+.+... .+.+. .+...++..+.|
T Consensus 163 ~~~~~~~~~~~~~L~~~---~~~~~-~~a~~~~~la~G 196 (334)
T PRK07993 163 YLAPPPEQYALTWLSRE---VTMSQ-DALLAALRLSAG 196 (334)
T ss_pred cCCCCCHHHHHHHHHHc---cCCCH-HHHHHHHHHcCC
Confidence 99999998877777532 22222 223445555554
No 348
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=2.1e-07 Score=99.97 Aligned_cols=152 Identities=22% Similarity=0.262 Sum_probs=100.7
Q ss_pred CCCceeeeecCCCCchhHHHHHHHHHhCC---------------------eEEEEe-Ccchhh-hc-cCccHHHHHHHHH
Q 003691 509 SPSKGVLFYGPPGCGKTLLAKAIANECQA---------------------NFISVK-GPELLT-MW-FGESEANVREIFD 564 (802)
Q Consensus 509 ~~~~gill~GppGtGKT~lakala~~~~~---------------------~~i~v~-~~~l~~-~~-vg~se~~i~~lf~ 564 (802)
+.+..+||+||+|+||+++|.++|..+-. ++..+. .++-.+ +. ..-.-..|+++-+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 45567999999999999999999977521 133331 111000 00 0012345666665
Q ss_pred HHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcc
Q 003691 565 KARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLD 640 (802)
Q Consensus 565 ~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~ 640 (802)
.+.. ....|++||++|.+- ....|.||+.|+. +..++++|.+|+.++.|-|.+++ |+.
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RCq 165 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN--------------RAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RCQ 165 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC--------------HHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hhe
Confidence 4433 344799999999983 3467899999995 55677888888999999999987 997
Q ss_pred eEEEecCCCHHHHHHHHHHHhccCCCCCccCHHHHHHHccCCCH
Q 003691 641 QLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSG 684 (802)
Q Consensus 641 ~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~t~g~sg 684 (802)
.+.|++|+.++-.+.+... ..+. .+...++..+.|--+
T Consensus 166 -~i~~~~~~~~~~~~~L~~~----~~~~-~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 166 -RLEFKLPPAHEALAWLLAQ----GVSE-RAAQEALDAARGHPG 203 (319)
T ss_pred -EeeCCCcCHHHHHHHHHHc----CCCh-HHHHHHHHHcCCCHH
Confidence 8899999998877777642 2222 223455665655433
No 349
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.68 E-value=6.5e-08 Score=112.10 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=28.4
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
++.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 21 sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~ 52 (500)
T TIGR02633 21 DLEVRPGECVGLCGENGAGKSTLMKILSGVYP 52 (500)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45667899999999999999999999999764
No 350
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.66 E-value=2.7e-07 Score=104.56 Aligned_cols=123 Identities=26% Similarity=0.373 Sum_probs=79.8
Q ss_pred CCceeeeecCCCCchhHHHHHHHHHhCCe--EEEEeCcchhh------------------h--------ccCccHHHHHH
Q 003691 510 PSKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLT------------------M--------WFGESEANVRE 561 (802)
Q Consensus 510 ~~~gill~GppGtGKT~lakala~~~~~~--~i~v~~~~l~~------------------~--------~vg~se~~i~~ 561 (802)
....++|+||||||||+|++.+++.+... -..+....+.+ . .+|.....-..
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG 288 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPG 288 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhh
Confidence 34569999999999999999999876421 11122211110 0 11111101112
Q ss_pred HHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC-----------CCCcEEEEEecCCCC---
Q 003691 562 IFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRPD--- 627 (802)
Q Consensus 562 lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~~--- 627 (802)
.+..|.. .++|+||++.+ ...++..|++.|+... ...++.+|+|+|...
T Consensus 289 ~l~~A~g---GvLfLDEi~e~--------------~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~ 351 (506)
T PRK09862 289 EISLAHN---GVLFLDELPEF--------------ERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGH 351 (506)
T ss_pred HhhhccC---CEEecCCchhC--------------CHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCcccee
Confidence 3455544 39999999775 2567788888885432 124689999999752
Q ss_pred ------------------CCCccccCCCCcceEEEecCCCHH
Q 003691 628 ------------------IIDPALLRPGRLDQLIYIPLPDEA 651 (802)
Q Consensus 628 ------------------~ld~allr~gRf~~~i~~~~p~~~ 651 (802)
.|..+++. |||..+.+++|+.+
T Consensus 352 ~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 352 YQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred cCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 36778888 99999999998754
No 351
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.66 E-value=1.1e-07 Score=103.46 Aligned_cols=193 Identities=23% Similarity=0.269 Sum_probs=111.6
Q ss_pred cccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhC---CeEEEEeCcchhh---
Q 003691 476 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLT--- 549 (802)
Q Consensus 476 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~--- 549 (802)
++++.|.....+.+.+.+... . .....|+|+|++||||+++|+++..... .+|+.++|..+..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~----------a-~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL----------A-PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH----------h-CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 345566655555554443321 1 2234599999999999999999987764 6899999987631
Q ss_pred --hccCccH-------HHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC--C-----
Q 003691 550 --MWFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--A----- 613 (802)
Q Consensus 550 --~~vg~se-------~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--~----- 613 (802)
.++|... ......|..|. ...||||||+.+. ..+...|+..++... .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~--------------~~~Q~~L~~~l~~~~~~~~g~~~ 136 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAP--------------MLVQEKLLRVIEYGELERVGGSQ 136 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCC--------------HHHHHHHHHHHhcCcEEeCCCCc
Confidence 1222110 00012233333 2489999999984 345667777775422 1
Q ss_pred --CCcEEEEEecCCC-------CCCCccccCCCCcc-eEEEecCCCH--HHHHHHHHHHhcc----CCCC--CccCHHHH
Q 003691 614 --KKTVFIIGATNRP-------DIIDPALLRPGRLD-QLIYIPLPDE--ASRLQIFKACLRK----SPIS--PDVDLSAL 675 (802)
Q Consensus 614 --~~~v~vi~aTn~~-------~~ld~allr~gRf~-~~i~~~~p~~--~~r~~Il~~~l~~----~~~~--~~~~~~~l 675 (802)
..++.||++|+.. ..+.+.|.. ||. ..|.+|+... ++...+++.++.+ .... ..++-+.+
T Consensus 137 ~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al 214 (326)
T PRK11608 137 PLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERAR 214 (326)
T ss_pred eeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 1247888888764 235566665 773 5667776643 3344555555432 2211 12333333
Q ss_pred HHH-ccCC--CHHHHHHHHHHHHHHH
Q 003691 676 ARY-THGF--SGADITEVCQRACKYA 698 (802)
Q Consensus 676 a~~-t~g~--sg~di~~~~~~a~~~a 698 (802)
... ...+ +-++|++++++|+..+
T Consensus 215 ~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 215 ETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 322 1223 3478888998887654
No 352
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.66 E-value=9.5e-08 Score=111.96 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=28.4
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
+|.+.++..+.|+||+|||||||+++|++.+.
T Consensus 27 s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~ 58 (556)
T PRK11819 27 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK 58 (556)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44678899999999999999999999999863
No 353
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.66 E-value=6.8e-07 Score=93.46 Aligned_cols=180 Identities=17% Similarity=0.274 Sum_probs=104.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhC---------CcEEEEechhh------h----h----hc--cchhHHHHHHHHHH
Q 003691 238 PKGILLYGPPGSGKTLIARAVANETG---------AFFFLINGPEI------M----S----KL--AGESESNLRKAFEE 292 (802)
Q Consensus 238 ~~~vLL~GppGtGKTtLar~la~~l~---------~~~v~v~~~~l------~----~----~~--~g~~~~~l~~vf~~ 292 (802)
..++||+|++|.|||++++.++...+ .+++.+..+.- . . .+ ..........+..-
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 46799999999999999999997653 24555554221 1 0 01 11122333445555
Q ss_pred HHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC--CHHhhccCCcceEEEeC
Q 003691 293 AEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI--DPALRRFGRFDREIDIG 370 (802)
Q Consensus 293 a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~l--d~al~r~~rf~~~i~i~ 370 (802)
.....+.+|+|||++.++.... ...+.+.+.|..+...+ +-.++.+|+..-...+ |+.+.+ ||.. +.++
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs~----~~qr~~Ln~LK~L~NeL--~ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp 211 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGSY----RKQREFLNALKFLGNEL--QIPIVGVGTREAYRALRTDPQLAS--RFEP-FELP 211 (302)
T ss_pred HHHcCCcEEEeechHHHhcccH----HHHHHHHHHHHHHhhcc--CCCeEEeccHHHHHHhccCHHHHh--ccCC-ccCC
Confidence 6667888999999999864321 12233334333332222 2245666654433333 677776 8854 3444
Q ss_pred CCC-HHHHHHHHHHHhccCcccc------chhhHHHHhhcCCCchHHHHHHHHHHHHHhHHhhc
Q 003691 371 VPD-EVGRLEILRIHTKNMKLAE------DVDLERVAKDTHGYVGSDLAALCTEAALQCIREKM 427 (802)
Q Consensus 371 ~P~-~~~R~~Il~~~~~~~~l~~------~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~~~ 427 (802)
.-. .++...++..+...+++.. ..-...+-..+.|..| ++..++..|+..+++...
T Consensus 212 ~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~ 274 (302)
T PF05621_consen 212 RWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSGE 274 (302)
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcCC
Confidence 322 2334456666655555432 2223567778888876 467778888888887653
No 354
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.66 E-value=1.1e-07 Score=103.73 Aligned_cols=201 Identities=22% Similarity=0.283 Sum_probs=122.8
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh----CCeEEEEeCcchh
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELL 548 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~----~~~~i~v~~~~l~ 548 (802)
...+++++|...--+.+++.+.. + ......+|++|++||||+.+|++|...+ ..|||.+||..+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~---~--------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA---Y--------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh---h--------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 34566677766555555554442 0 1223459999999999999999998654 4589999998875
Q ss_pred hh-------------ccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC---
Q 003691 549 TM-------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN--- 612 (802)
Q Consensus 549 ~~-------------~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~--- 612 (802)
.. |.| ....-.-+|+.|... .||+|||..+.+ .....||+.||...
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP~--------------~~Q~kLl~~le~g~~~r 204 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLPP--------------EGQEKLLRVLEEGEYRR 204 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCCH--------------hHHHHHHHHHHcCceEe
Confidence 32 222 122233456666554 999999999853 35677888888732
Q ss_pred ------CCCcEEEEEecCCC--CCCCc--cccCCCCcceEEEecCCCH--HHHHHHHHHHh----ccCCCCCccCHHHHH
Q 003691 613 ------AKKTVFIIGATNRP--DIIDP--ALLRPGRLDQLIYIPLPDE--ASRLQIFKACL----RKSPISPDVDLSALA 676 (802)
Q Consensus 613 ------~~~~v~vi~aTn~~--~~ld~--allr~gRf~~~i~~~~p~~--~~r~~Il~~~l----~~~~~~~~~~~~~la 676 (802)
-..+|.+|+|||-. +.+-. .+.+ -|+...|.+|+.-+ +++..+.+.++ ++...+...+.....
T Consensus 205 vG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~-rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~ 283 (403)
T COG1221 205 VGGSQPRPVDVRLICATTEDLEEAVLAGADLTR-RLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEAL 283 (403)
T ss_pred cCCCCCcCCCceeeeccccCHHHHHHhhcchhh-hhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 13468899999753 22323 3443 15666777776654 33333444444 444443333332232
Q ss_pred HHccCC----CHHHHHHHHHHHHHHHHHHHH
Q 003691 677 RYTHGF----SGADITEVCQRACKYAIRENI 703 (802)
Q Consensus 677 ~~t~g~----sg~di~~~~~~a~~~a~~~~~ 703 (802)
+....| +-++++++++.++..+....+
T Consensus 284 ~~L~~y~~pGNirELkN~Ve~~~~~~~~~~~ 314 (403)
T COG1221 284 RALLAYDWPGNIRELKNLVERAVAQASGEGQ 314 (403)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHhccccC
Confidence 222222 458999999999988865443
No 355
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.5e-07 Score=97.47 Aligned_cols=83 Identities=27% Similarity=0.493 Sum_probs=61.8
Q ss_pred CeEEEecccccccCCCCCCchhHHH-HHHHHHHHhhhcccC--------CCcEEEEEec----CCCCCCCHHhhccCCcc
Q 003691 298 PSIIFIDELDSIAPKREKTHGEVER-RIVSQLLTLMDGLKS--------RAHVIVMGAT----NRPNSIDPALRRFGRFD 364 (802)
Q Consensus 298 p~il~iDEid~l~~~~~~~~~~~~~-~v~~~Ll~~ld~~~~--------~~~vivI~~t----n~~~~ld~al~r~~rf~ 364 (802)
-.|+||||||.++.+.+.+.+++.+ -+...|+.+++|..- ...+++|++- ..|.+|-|.|.. ||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCc
Confidence 4699999999999887644334433 455667777776432 2467777643 468888898985 999
Q ss_pred eEEEeCCCCHHHHHHHHH
Q 003691 365 REIDIGVPDEVGRLEILR 382 (802)
Q Consensus 365 ~~i~i~~P~~~~R~~Il~ 382 (802)
-.+++...+.+.-..||.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999999988885
No 356
>PRK08116 hypothetical protein; Validated
Probab=98.65 E-value=6.3e-08 Score=102.12 Aligned_cols=130 Identities=25% Similarity=0.273 Sum_probs=80.3
Q ss_pred CceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhhcc----CccHHHHHHHHHHHhhCCCeEEEEcccchhh
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWF----GESEANVREIFDKARQSAPCVLFFDELDSIA 583 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~v----g~se~~i~~lf~~a~~~~p~il~iDEid~l~ 583 (802)
..|++|+|++|||||+||.++|+.+ +.+++.++.++++..+. +.+......+++.... ..+|+|||+...-
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~--~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN--ADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC--CCEEEEecccCCC
Confidence 4579999999999999999999986 67788888888765432 1121222334444332 2599999996521
Q ss_pred hccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCC-CC----CCccccCCCCc---ceEEEecCCCHHHHHH
Q 003691 584 TQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP-DI----IDPALLRPGRL---DQLIYIPLPDEASRLQ 655 (802)
Q Consensus 584 ~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~-~~----ld~allr~gRf---~~~i~~~~p~~~~r~~ 655 (802)
..+.....|...++.....+ ..+|.|||.+ +. ++..+.+ |+ ...|.++.+|. |..
T Consensus 192 ------------~t~~~~~~l~~iin~r~~~~-~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~ 254 (268)
T PRK08116 192 ------------DTEWAREKVYNIIDSRYRKG-LPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKE 254 (268)
T ss_pred ------------CCHHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHH
Confidence 12334455666666532222 3466677765 22 4666665 64 33466666665 555
Q ss_pred HHHH
Q 003691 656 IFKA 659 (802)
Q Consensus 656 Il~~ 659 (802)
+.+.
T Consensus 255 ~~~e 258 (268)
T PRK08116 255 IAKE 258 (268)
T ss_pred HHHH
Confidence 5443
No 357
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.65 E-value=4.5e-08 Score=113.37 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=27.6
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANET 262 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 262 (802)
++.+.+++.+.|.||+|+|||||+++|++.+
T Consensus 24 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 54 (501)
T PRK11288 24 SFDCRAGQVHALMGENGAGKSTLLKILSGNY 54 (501)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999999999875
No 358
>PRK13409 putative ATPase RIL; Provisional
Probab=98.64 E-value=6.1e-08 Score=113.42 Aligned_cols=30 Identities=30% Similarity=0.320 Sum_probs=26.5
Q ss_pred CCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Q 003691 235 VKPPKGILLYGPPGSGKTLIARAVANETGA 264 (802)
Q Consensus 235 i~~~~~vLL~GppGtGKTtLar~la~~l~~ 264 (802)
+.+++.+.|+||+|+|||||+++|++.+..
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p 125 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELIP 125 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 467888999999999999999999997643
No 359
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.64 E-value=5.1e-07 Score=91.67 Aligned_cols=40 Identities=43% Similarity=0.692 Sum_probs=33.8
Q ss_pred CCceeeeecCCCCchhHHHHHHHHHhC--CeEEEEeCcchhh
Q 003691 510 PSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT 549 (802)
Q Consensus 510 ~~~gill~GppGtGKT~lakala~~~~--~~~i~v~~~~l~~ 549 (802)
.++.+||.||||||||.||-+++.++| .||..+.++++++
T Consensus 63 aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS 104 (456)
T KOG1942|consen 63 AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYS 104 (456)
T ss_pred cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhh
Confidence 456799999999999999999999996 4677777777654
No 360
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=2.8e-07 Score=98.88 Aligned_cols=129 Identities=14% Similarity=0.207 Sum_probs=94.1
Q ss_pred CCCceeeeecCCCCchhHHHHHHHHHhC-----------------------CeEEEEeCcchhhhccCccHHHHHHHHHH
Q 003691 509 SPSKGVLFYGPPGCGKTLLAKAIANECQ-----------------------ANFISVKGPELLTMWFGESEANVREIFDK 565 (802)
Q Consensus 509 ~~~~gill~GppGtGKT~lakala~~~~-----------------------~~~i~v~~~~l~~~~vg~se~~i~~lf~~ 565 (802)
+.+..+||+||.|+||+++|+++|..+- .+|+.+.... .++.+ +-..||.+-+.
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHH
Confidence 4566799999999999999999998762 1233333211 00111 23445555444
Q ss_pred H----hhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcce
Q 003691 566 A----RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQ 641 (802)
Q Consensus 566 a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~ 641 (802)
+ ......|++||++|.+- ....|.||+.|+. +..++++|..|+.++.|-|.+++ |+.
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq- 160 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMN--------------ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ- 160 (319)
T ss_pred HhhCcccCCceEEEecchhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-
Confidence 3 33445799999999983 3467899999994 56678899999999999999887 997
Q ss_pred EEEecCCCHHHHHHHHHH
Q 003691 642 LIYIPLPDEASRLQIFKA 659 (802)
Q Consensus 642 ~i~~~~p~~~~r~~Il~~ 659 (802)
.+.|++|+.++..+.+..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eEeCCCCCHHHHHHHHHH
Confidence 889999999888877764
No 361
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=9.9e-07 Score=96.54 Aligned_cols=110 Identities=23% Similarity=0.318 Sum_probs=67.3
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHh--CCcE-EEEec--------------------------------hhhhh
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANET--GAFF-FLING--------------------------------PEIMS 276 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l--~~~~-v~v~~--------------------------------~~l~~ 276 (802)
++.+..++...|+|++|+|||||+|+||.-- +.+. -++.+ .++..
T Consensus 100 ~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~ 179 (582)
T KOG0062|consen 100 NLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYD 179 (582)
T ss_pred ceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHH
Confidence 4455678899999999999999999999710 0000 00000 11111
Q ss_pred h---ccc-------------hhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCc
Q 003691 277 K---LAG-------------ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 340 (802)
Q Consensus 277 ~---~~g-------------~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 340 (802)
+ ..| ....+.+..++.|.-..|++|++|| +.+..+-..+.+|.+.+..+.
T Consensus 180 ~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDE----------PTNhLDv~av~WLe~yL~t~~---- 245 (582)
T KOG0062|consen 180 KILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDE----------PTNHLDVVAVAWLENYLQTWK---- 245 (582)
T ss_pred HHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecC----------CcccchhHHHHHHHHHHhhCC----
Confidence 0 000 1234566777778888999999999 445555666777777776543
Q ss_pred EEEEEecCCCCCCCH
Q 003691 341 VIVMGATNRPNSIDP 355 (802)
Q Consensus 341 vivI~~tn~~~~ld~ 355 (802)
+.++..+++...||.
T Consensus 246 ~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 246 ITSLIVSHDRNFLNT 260 (582)
T ss_pred ceEEEEeccHHHHHH
Confidence 444445666555544
No 362
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.62 E-value=1.2e-07 Score=112.50 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=34.9
Q ss_pred hhhhccCCCCce--eeeecCCCCchhHHHHHHHHHhCC--eEEEEeCcch
Q 003691 502 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL 547 (802)
Q Consensus 502 ~~~~~~~~~~~g--ill~GppGtGKT~lakala~~~~~--~~i~v~~~~l 547 (802)
.++.+++....| +.|.||+|||||||++++++.+.. .-+.+++.++
T Consensus 339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i 388 (623)
T PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRI 388 (623)
T ss_pred EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEEC
Confidence 455566665555 889999999999999999998753 3466666654
No 363
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.62 E-value=2.4e-07 Score=103.11 Aligned_cols=134 Identities=20% Similarity=0.257 Sum_probs=75.1
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhCC--cEEEEec-----hhhhhhccchhHHHHHHHHHHHHhc---CCeEEEecc
Q 003691 236 KPPKGILLYGPPGSGKTLIARAVANETGA--FFFLING-----PEIMSKLAGESESNLRKAFEEAEKN---APSIIFIDE 305 (802)
Q Consensus 236 ~~~~~vLL~GppGtGKTtLar~la~~l~~--~~v~v~~-----~~l~~~~~g~~~~~l~~vf~~a~~~---~p~il~iDE 305 (802)
..+.+|||.||||||||++|++|+...+. +|..+.+ .++++...-. ...-..-|...... ...++|+||
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~-~~~~~g~f~r~~~G~L~~A~lLfLDE 115 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQ-ALKDEGRYQRLTSGYLPEAEIVFLDE 115 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHh-hhhhcCchhhhcCCccccccEEeecc
Confidence 35789999999999999999999997653 3333332 2332211000 00001112111111 234899999
Q ss_pred cccccCCCCCCchhHHHHHHHHHHHhhhccc--------CCCcEEEEEecCCCCC---CCHHhhccCCcceEEEeCCCC-
Q 003691 306 LDSIAPKREKTHGEVERRIVSQLLTLMDGLK--------SRAHVIVMGATNRPNS---IDPALRRFGRFDREIDIGVPD- 373 (802)
Q Consensus 306 id~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--------~~~~vivI~~tn~~~~---ld~al~r~~rf~~~i~i~~P~- 373 (802)
|..+. ....+.|+..|..-. .-+..+++++||.... ..+++.. ||...+.+++|+
T Consensus 116 I~ras-----------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~ 182 (498)
T PRK13531 116 IWKAG-----------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQD 182 (498)
T ss_pred cccCC-----------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCc
Confidence 97553 345577777774321 1112344445564322 2235554 787888999997
Q ss_pred HHHHHHHHHH
Q 003691 374 EVGRLEILRI 383 (802)
Q Consensus 374 ~~~R~~Il~~ 383 (802)
.++-.++|..
T Consensus 183 ~~~e~~lL~~ 192 (498)
T PRK13531 183 KANFRSMLTS 192 (498)
T ss_pred hHHHHHHHHc
Confidence 4555777764
No 364
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.61 E-value=1.8e-07 Score=109.02 Aligned_cols=198 Identities=22% Similarity=0.283 Sum_probs=116.3
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhh
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 549 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~ 549 (802)
...++++.|.....+.+.+.+.... .....|+|+|++|||||++|+++...+ +.+|+.++|..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 3466778887776666655544211 223459999999999999999999886 46899999987632
Q ss_pred hc-----cCccHHH-------HHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC-----
Q 003691 550 MW-----FGESEAN-------VREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----- 612 (802)
Q Consensus 550 ~~-----vg~se~~-------i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----- 612 (802)
.+ +|..... -...|..+ ....||||||+.+. ..+...|+..++...
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~--------------~~~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS--------------PAFQAKLLRVLQEGEFERVG 323 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC--------------HHHHHHHHHHHhcCcEEECC
Confidence 11 1111000 00112222 23589999999973 346677777776432
Q ss_pred C----CCcEEEEEecCCC--C-----CCCccccCCCCcc-eEEEecCCC--HHHHHHHHHHHhccC----CCCCccC---
Q 003691 613 A----KKTVFIIGATNRP--D-----IIDPALLRPGRLD-QLIYIPLPD--EASRLQIFKACLRKS----PISPDVD--- 671 (802)
Q Consensus 613 ~----~~~v~vi~aTn~~--~-----~ld~allr~gRf~-~~i~~~~p~--~~~r~~Il~~~l~~~----~~~~~~~--- 671 (802)
+ ..++-+|++|+.. + .+.+.|.. |+. ..|.+|+.. .++...+++.++++. .....++
T Consensus 324 ~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSA 401 (534)
T ss_pred CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 0 1247788888764 1 22233333 443 467777665 344556666665432 2112233
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q 003691 672 LSALARYTHGFSGADITEVCQRACKYAIR 700 (802)
Q Consensus 672 ~~~la~~t~g~sg~di~~~~~~a~~~a~~ 700 (802)
+..|..+.=--+-+++++++++|+..+-.
T Consensus 402 ~~~L~~~~WPGNvrEL~~v~~~a~~~~~~ 430 (534)
T TIGR01817 402 IRVLMSCKWPGNVRELENCLERTATLSRS 430 (534)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 23333332122458999999998876543
No 365
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.61 E-value=1.7e-07 Score=94.78 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=28.5
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
++.+.+++.|.|.||+|||||||.+.+|+...
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45678899999999999999999999998764
No 366
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.61 E-value=1.7e-07 Score=109.85 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=28.2
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
++.+.+++.+.|+||+|+|||||+++|++...
T Consensus 25 s~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~ 56 (552)
T TIGR03719 25 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK 56 (552)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34568899999999999999999999998763
No 367
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=1.8e-06 Score=93.58 Aligned_cols=236 Identities=19% Similarity=0.243 Sum_probs=143.6
Q ss_pred ccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh----CC-eEEEEeCcchh-----
Q 003691 479 IGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----QA-NFISVKGPELL----- 548 (802)
Q Consensus 479 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~----~~-~~i~v~~~~l~----- 548 (802)
+.|-+.-...+++++..++ ....+..+.+.|.||+|||.+..-+-... .. ..+++++..+.
T Consensus 152 l~gRe~e~~~v~~F~~~hl---------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLHL---------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred ccchHHHHHHHHHHHHhhh---------hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 3344444455555544332 23445669999999999999888554433 22 44788876542
Q ss_pred -----hhc----c-CccHHHHHHHHHHHhhC--CCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCc
Q 003691 549 -----TMW----F-GESEANVREIFDKARQS--APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKT 616 (802)
Q Consensus 549 -----~~~----v-g~se~~i~~lf~~a~~~--~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~ 616 (802)
+.+ + +.++.+....|+..... .+-++++||+|.++... ..++.++ -++..+ ...+
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~l-Fewp~l-p~sr 289 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYTL-FEWPKL-PNSR 289 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeeee-hhcccC-Ccce
Confidence 112 1 12234455566554432 35699999999998432 1222222 222322 3568
Q ss_pred EEEEEecCCCCCCCccccC----CCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcc--CHHHHHHHccCCCHH--HHH
Q 003691 617 VFIIGATNRPDIIDPALLR----PGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDV--DLSALARYTHGFSGA--DIT 688 (802)
Q Consensus 617 v~vi~aTn~~~~ld~allr----~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~--~~~~la~~t~g~sg~--di~ 688 (802)
+++|+..|..|+=|-.|.| -+--...+.|+||+.++..+||+..+...+..... .++.+|+...+.||. ..-
T Consensus 290 ~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaL 369 (529)
T KOG2227|consen 290 IILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKAL 369 (529)
T ss_pred eeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHH
Confidence 9999999999887755543 12334789999999999999999999887655443 367788888888873 333
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhcCCCcccccccccccccccHHHHHHHHhhcCC
Q 003691 689 EVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARR 745 (802)
Q Consensus 689 ~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~ 745 (802)
.+|+.|...|-.+.-... .......+.+.....|..+|+-.++.++-.
T Consensus 370 dv~R~aiEI~E~e~r~~~---------~~~l~~~~~p~~~~~v~~~~va~viSk~~~ 417 (529)
T KOG2227|consen 370 DVCRRAIEIAEIEKRKIL---------DDPLSPGTSPEKKKKVGVEHVAAVISKVDG 417 (529)
T ss_pred HHHHHHHHHHHHHHhhcc---------ccCCCCCCCcccccccchHHHHHHhhhhcc
Confidence 478888877765542211 111111111222245778888888776643
No 368
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.60 E-value=6e-07 Score=97.98 Aligned_cols=148 Identities=23% Similarity=0.322 Sum_probs=96.3
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC---------------------
Q 003691 205 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--------------------- 263 (802)
Q Consensus 205 ~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~--------------------- 263 (802)
++.|.+.....+..+....- .-+..+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 35556666666655554211 1223599999999999999999999886
Q ss_pred ---CcEEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhccc
Q 003691 264 ---AFFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (802)
Q Consensus 264 ---~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~ 336 (802)
..++.++.++..... .....++.+.+.... ...-+++|||+|.+.. ...+.++..++...
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-----------~A~nallk~lEep~ 137 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-----------DAANALLKTLEEPP 137 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHhccCC
Confidence 356666665543221 234455555554432 2356999999998854 34567777777544
Q ss_pred CCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHH
Q 003691 337 SRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEIL 381 (802)
Q Consensus 337 ~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il 381 (802)
. ...+|.+||.++.+-+.+++ |. ..+.|.+|........+
T Consensus 138 ~--~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 138 K--NTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWL 177 (325)
T ss_pred C--CeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHh
Confidence 4 56667788999999888887 54 45677765554444333
No 369
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.60 E-value=2.6e-08 Score=90.56 Aligned_cols=102 Identities=28% Similarity=0.385 Sum_probs=55.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCcEEEEech-hh-----hhhcc-----chhHHHHHHHHHHHHhcCCeEEEeccccc
Q 003691 240 GILLYGPPGSGKTLIARAVANETGAFFFLINGP-EI-----MSKLA-----GESESNLRKAFEEAEKNAPSIIFIDELDS 308 (802)
Q Consensus 240 ~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~-~l-----~~~~~-----g~~~~~l~~vf~~a~~~~p~il~iDEid~ 308 (802)
||||.|+||+|||++++++|+.++..+..|.+. ++ .+... +...-.-+-+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 689999999999999999999999999888773 33 22111 11100111122 24999999987
Q ss_pred ccCCCCCCchhHHHHHHHHHHHhhhccc---------CCCcEEEEEecCCCC-----CCCHHhhc
Q 003691 309 IAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVIVMGATNRPN-----SIDPALRR 359 (802)
Q Consensus 309 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~vivI~~tn~~~-----~ld~al~r 359 (802)
..+ ++.+.|++.|.+.+ -...++||+|.|+.+ .+++++..
T Consensus 74 app-----------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D 127 (131)
T PF07726_consen 74 APP-----------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD 127 (131)
T ss_dssp S-H-----------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT
T ss_pred CCH-----------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc
Confidence 653 45677888776432 123588999999865 45555554
No 370
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.60 E-value=9.4e-08 Score=105.74 Aligned_cols=197 Identities=26% Similarity=0.371 Sum_probs=117.0
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhh
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 549 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~ 549 (802)
..+|++|.|-.....++.+.+.. .......||+.|.+||||..+|+++.+.+ +.|||.+||..+-.
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 46788888877665555444332 12334569999999999999999999987 46899999965531
Q ss_pred -------------hccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC----
Q 003691 550 -------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN---- 612 (802)
Q Consensus 550 -------------~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~---- 612 (802)
-|.|....--.-+|+.|... -||+|||..+. ..+...||+.|..-+
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgemp--------------l~LQaKLLRVLQEkei~rv 372 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMP--------------LPLQAKLLRVLQEKEIERV 372 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCC--------------HHHHHHHHHHHhhceEEec
Confidence 12333332233567777655 89999997763 457778888876521
Q ss_pred -C----CCcEEEEEecCCC--CCCCccccCCC---CcceEEEecCCCHHHHHH----HHHHHh----ccCCCC-CccC--
Q 003691 613 -A----KKTVFIIGATNRP--DIIDPALLRPG---RLDQLIYIPLPDEASRLQ----IFKACL----RKSPIS-PDVD-- 671 (802)
Q Consensus 613 -~----~~~v~vi~aTn~~--~~ld~allr~g---Rf~~~i~~~~p~~~~r~~----Il~~~l----~~~~~~-~~~~-- 671 (802)
+ .-+|-||+|||+. +++...-.|.. |+. ++.+..|...+|.+ +...++ ++++.. ..+.
T Consensus 373 G~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 373 GGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 1 2368999999985 33333222211 333 44444454444422 222223 333221 1122
Q ss_pred -HHHHHHHccCCCHHHHHHHHHHHHHHH
Q 003691 672 -LSALARYTHGFSGADITEVCQRACKYA 698 (802)
Q Consensus 672 -~~~la~~t~g~sg~di~~~~~~a~~~a 698 (802)
+..|.++.==-+-++|++++.++...+
T Consensus 452 a~~~L~~y~WPGNVRELeNviER~v~~~ 479 (560)
T COG3829 452 ALALLLRYDWPGNVRELENVIERAVNLV 479 (560)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhcc
Confidence 233333211124589999999988644
No 371
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.59 E-value=2.6e-07 Score=110.13 Aligned_cols=195 Identities=21% Similarity=0.246 Sum_probs=107.6
Q ss_pred cccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhC---CeEEEEeCcchh--
Q 003691 474 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELL-- 548 (802)
Q Consensus 474 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~---~~~i~v~~~~l~-- 548 (802)
.+|+++.|.....+.+.+.+... . .....|+|+|++||||+++|+++...+. .+|+.++|..+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~----------a-~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQA----------A-KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHH----------h-CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 35667777665554444433211 1 2234599999999999999999998764 689999997652
Q ss_pred ---hhccCcc----HHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC----CC---
Q 003691 549 ---TMWFGES----EANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----AK--- 614 (802)
Q Consensus 549 ---~~~vg~s----e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----~~--- 614 (802)
+.++|.. .......|+.| ....||||||+.+. ..+...|+..|+... +.
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~--------------~~~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS--------------PELQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCC--------------HHHHHHHHHHHhcCcEEeCCCCce
Confidence 1222211 00001123333 23589999999974 345667777776432 11
Q ss_pred --CcEEEEEecCCCC--CC-----CccccCCCCc-ceEEEecCCCH--HHHHHHHHHHhccC----CCCCccC---HHHH
Q 003691 615 --KTVFIIGATNRPD--II-----DPALLRPGRL-DQLIYIPLPDE--ASRLQIFKACLRKS----PISPDVD---LSAL 675 (802)
Q Consensus 615 --~~v~vi~aTn~~~--~l-----d~allr~gRf-~~~i~~~~p~~--~~r~~Il~~~l~~~----~~~~~~~---~~~l 675 (802)
-++-||+|||..- .+ .+.|.- |+ ...|.+|+... ++...+++.+++++ .....++ +..|
T Consensus 454 ~~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 531 (638)
T PRK11388 454 IPVDVRVIATTTADLAMLVEQNRFSRQLYY--ALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARL 531 (638)
T ss_pred EEeeEEEEEeccCCHHHHHhcCCChHHHhh--hhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHH
Confidence 1577999998741 12 222221 33 23445554432 23344455555432 1111222 3333
Q ss_pred HHHccCCCHHHHHHHHHHHHHHH
Q 003691 676 ARYTHGFSGADITEVCQRACKYA 698 (802)
Q Consensus 676 a~~t~g~sg~di~~~~~~a~~~a 698 (802)
..+.=--+-++|+++++.|+..+
T Consensus 532 ~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 532 VSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred HcCCCCChHHHHHHHHHHHHHhC
Confidence 33221234588899999887654
No 372
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.59 E-value=1.1e-06 Score=92.04 Aligned_cols=198 Identities=16% Similarity=0.275 Sum_probs=114.7
Q ss_pred cccchh---hhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhC---------CeEEEEeCcch
Q 003691 480 GGLDNV---KRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPEL 547 (802)
Q Consensus 480 ~g~~~~---k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~---------~~~i~v~~~~l 547 (802)
+|.... .+.|.+.+.+|.. ....++||+|++|.|||++++.+..... .|.+.+.++.-
T Consensus 37 IgY~~A~~~L~~L~~Ll~~P~~----------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~ 106 (302)
T PF05621_consen 37 IGYPRAKEALDRLEELLEYPKR----------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPE 106 (302)
T ss_pred ecCHHHHHHHHHHHHHHhCCcc----------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCC
Confidence 444444 3455555555532 2235699999999999999999997753 35666665332
Q ss_pred hh---hc----------c--Ccc-HHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhcc
Q 003691 548 LT---MW----------F--GES-EANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGM 611 (802)
Q Consensus 548 ~~---~~----------v--g~s-e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~ 611 (802)
-+ -| + ..+ .+.-..+..-.+...+.+|+|||++.++.-. .+-..++|+.|..+
T Consensus 107 p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs-----------~~~qr~~Ln~LK~L 175 (302)
T PF05621_consen 107 PDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS-----------YRKQREFLNALKFL 175 (302)
T ss_pred CChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc-----------HHHHHHHHHHHHHH
Confidence 11 11 0 111 1222233344556777899999999986421 11233444444444
Q ss_pred CCCC--cEEEEEecCCCCC--CCccccCCCCcceEEEecCCC-HHHHHHHHHHHhccCCCCC--ccCHH----HHHHHcc
Q 003691 612 NAKK--TVFIIGATNRPDI--IDPALLRPGRLDQLIYIPLPD-EASRLQIFKACLRKSPISP--DVDLS----ALARYTH 680 (802)
Q Consensus 612 ~~~~--~v~vi~aTn~~~~--ld~allr~gRf~~~i~~~~p~-~~~r~~Il~~~l~~~~~~~--~~~~~----~la~~t~ 680 (802)
.+.- .++.+||-.-... -|+-+-+ ||+ .+.+|... .++-..++..+-+.+|+.. ..... .|-..++
T Consensus 176 ~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~ 252 (302)
T PF05621_consen 176 GNELQIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSE 252 (302)
T ss_pred hhccCCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcC
Confidence 3332 3445554433333 3677776 998 55556432 2344556666655555542 22223 4445567
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 003691 681 GFSGADITEVCQRACKYAIREN 702 (802)
Q Consensus 681 g~sg~di~~~~~~a~~~a~~~~ 702 (802)
|.. ++|..++..|+..|++.+
T Consensus 253 G~i-G~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 253 GLI-GELSRLLNAAAIAAIRSG 273 (302)
T ss_pred Cch-HHHHHHHHHHHHHHHhcC
Confidence 654 588899999999999876
No 373
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.59 E-value=2.1e-07 Score=106.61 Aligned_cols=197 Identities=22% Similarity=0.306 Sum_probs=111.3
Q ss_pred cccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHH-----------hCCeEEEE
Q 003691 474 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE-----------CQANFISV 542 (802)
Q Consensus 474 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~-----------~~~~~i~v 542 (802)
..++++.|.....+.+.+.+... . .....|||+|++||||+++|+++... .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~----------A-~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY----------A-RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH----------h-CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 35677888877666666554321 1 22346999999999999999999887 35689999
Q ss_pred eCcchhhh-----ccCccHH--------HHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhh
Q 003691 543 KGPELLTM-----WFGESEA--------NVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMD 609 (802)
Q Consensus 543 ~~~~l~~~-----~vg~se~--------~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld 609 (802)
+|..+... .+|..+. .-..+|+.|.. ..||||||+.+. ..+...||..|+
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp--------------~~~Q~kLl~~L~ 347 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMP--------------LPLQTRLLRVLE 347 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCC--------------HHHHHHHHhhhh
Confidence 99876321 1221110 11124555543 489999999974 346677777776
Q ss_pred ccC-----C----CCcEEEEEecCCC--CCCCccccCCC---Ccc-eEEEecCCCH--HHHHHHHHHHhcc----CCCCC
Q 003691 610 GMN-----A----KKTVFIIGATNRP--DIIDPALLRPG---RLD-QLIYIPLPDE--ASRLQIFKACLRK----SPISP 668 (802)
Q Consensus 610 ~~~-----~----~~~v~vi~aTn~~--~~ld~allr~g---Rf~-~~i~~~~p~~--~~r~~Il~~~l~~----~~~~~ 668 (802)
... + .-++-||++||.. +.+.....|+. |+. ..|++||... ++...+++.++++ ....-
T Consensus 348 e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 348 EKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred cCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 421 1 1246789999875 12222111110 332 3445555432 3344455666644 22221
Q ss_pred ccCH--------HHHHHHccCCCHHHHHHHHHHHHHHH
Q 003691 669 DVDL--------SALARYTHGFSGADITEVCQRACKYA 698 (802)
Q Consensus 669 ~~~~--------~~la~~t~g~sg~di~~~~~~a~~~a 698 (802)
..+. ..|..+.==-+-++|++++++++..+
T Consensus 428 ~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~ 465 (538)
T PRK15424 428 SAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFL 465 (538)
T ss_pred CHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 1111 11222111124589999999988753
No 374
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.5e-07 Score=96.81 Aligned_cols=98 Identities=33% Similarity=0.520 Sum_probs=73.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhh-hhccchhHH-HHHHHHHHHH----hcCCeEEEecccccccC
Q 003691 238 PKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIM-SKLAGESES-NLRKAFEEAE----KNAPSIIFIDELDSIAP 311 (802)
Q Consensus 238 ~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~-~~~~g~~~~-~l~~vf~~a~----~~~p~il~iDEid~l~~ 311 (802)
..+|||+||+|||||.||+.||+.++.+|..-++..+. ..|+|+--+ .+-.+++.+. .....|++|||||.+..
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 35799999999999999999999999999888887775 357776544 4455666542 33457999999999998
Q ss_pred CCCCCch--h-HHHHHHHHHHHhhhcc
Q 003691 312 KREKTHG--E-VERRIVSQLLTLMDGL 335 (802)
Q Consensus 312 ~~~~~~~--~-~~~~v~~~Ll~~ld~~ 335 (802)
+..+++- + ...-+..+|+..+++-
T Consensus 177 kSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 177 KSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cCCCCCcccccCchHHHHHHHHHHcCc
Confidence 7654431 1 1245667888888763
No 375
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.56 E-value=5.2e-06 Score=95.32 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=54.8
Q ss_pred cCCCCceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhhc------cC----------------------cc
Q 003691 507 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW------FG----------------------ES 555 (802)
Q Consensus 507 ~~~~~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~------vg----------------------~s 555 (802)
|+.+...+|+.||||+|||+|+..++... +-+.+++...+-.... +| ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 56666679999999999999999888764 4455666543332110 00 11
Q ss_pred HHHHHHHHHHHhhCCCeEEEEcccchhhh
Q 003691 556 EANVREIFDKARQSAPCVLFFDELDSIAT 584 (802)
Q Consensus 556 e~~i~~lf~~a~~~~p~il~iDEid~l~~ 584 (802)
+..+..+.+......|.+++||=+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 45667777888888899999999988754
No 376
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=1.2e-06 Score=94.36 Aligned_cols=179 Identities=13% Similarity=0.204 Sum_probs=116.0
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------------
Q 003691 202 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 265 (802)
Q Consensus 202 ~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------------- 265 (802)
.|++|.|++..++.+++.+... .-+..+||+||+|+||+++|.++|..+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4789999999999999988641 225689999999999999999999886321
Q ss_pred --EEEEechhhh-hh--------ccc--------hhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHH
Q 003691 266 --FFLINGPEIM-SK--------LAG--------ESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVER 322 (802)
Q Consensus 266 --~v~v~~~~l~-~~--------~~g--------~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~ 322 (802)
++.+...... ++ ..| -.-..++.+.+.+.. ....|++||++|.+. .
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~-----------~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN-----------E 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------H
Confidence 1222110000 00 000 011345666554432 345799999998774 2
Q ss_pred HHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccccchhhHHHHhh
Q 003691 323 RIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKD 402 (802)
Q Consensus 323 ~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~ 402 (802)
...+.|+..|+... +. ++|..++.++.+-+.+++ |. ..+.++.++.++-.++|......-.. +.+...++..
T Consensus 139 ~aaNaLLK~LEEPp-~~--~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~~~ 210 (314)
T PRK07399 139 AAANALLKTLEEPG-NG--TLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELLAL 210 (314)
T ss_pred HHHHHHHHHHhCCC-CC--eEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHHHH
Confidence 34577888998765 33 455567788999999998 65 66899999999998888754321111 1123566666
Q ss_pred cCCCchHHH
Q 003691 403 THGYVGSDL 411 (802)
Q Consensus 403 t~g~~~~dl 411 (802)
..|-.+.-+
T Consensus 211 a~Gs~~~al 219 (314)
T PRK07399 211 AQGSPGAAI 219 (314)
T ss_pred cCCCHHHHH
Confidence 666554433
No 377
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=1.4e-06 Score=94.31 Aligned_cols=129 Identities=17% Similarity=0.303 Sum_probs=90.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEEechhhhhhccchhHHHHHHHHHH
Q 003691 237 PPKGILLYGPPGSGKTLIARAVANETGAF------------------------FFLINGPEIMSKLAGESESNLRKAFEE 292 (802)
Q Consensus 237 ~~~~vLL~GppGtGKTtLar~la~~l~~~------------------------~v~v~~~~l~~~~~g~~~~~l~~vf~~ 292 (802)
.+..+||+||+|+|||++|+.+|+.+... ++.+.... ....-.-..+|.+.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~---~~~~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE---ADKTIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC---CCCCCCHHHHHHHHHH
Confidence 35679999999999999999999987431 11121100 0001123566666655
Q ss_pred HHh----cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEE
Q 003691 293 AEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREID 368 (802)
Q Consensus 293 a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~ 368 (802)
+.. ....|++||++|.+.. ...+.|++.+++.. .++++|.+|+.++.+.|.+++ |+ ..+.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~-----------~aaNaLLK~LEEPp--~~~~fiL~t~~~~~ll~TI~S--Rc-~~~~ 161 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNR-----------NAANALLKSLEEPS--GDTVLLLISHQPSRLLPTIKS--RC-QQQA 161 (328)
T ss_pred HhhccccCCCeEEEECChhhCCH-----------HHHHHHHHHHhCCC--CCeEEEEEECChhhCcHHHHh--hc-eeee
Confidence 432 3456889999998743 35678888888743 467777889999999999998 76 4589
Q ss_pred eCCCCHHHHHHHHHHH
Q 003691 369 IGVPDEVGRLEILRIH 384 (802)
Q Consensus 369 i~~P~~~~R~~Il~~~ 384 (802)
+++|+.++-.+.|...
T Consensus 162 ~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 162 CPLPSNEESLQWLQQA 177 (328)
T ss_pred CCCcCHHHHHHHHHHh
Confidence 9999998888777644
No 378
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.54 E-value=1.1e-07 Score=94.48 Aligned_cols=46 Identities=30% Similarity=0.578 Sum_probs=35.6
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 203 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 203 ~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
|.+|.|++..+..+.-... | +.++||+||||||||++|+.+...++
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 6789999998888754442 1 46899999999999999999998875
No 379
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.54 E-value=2.1e-07 Score=106.72 Aligned_cols=197 Identities=20% Similarity=0.285 Sum_probs=113.2
Q ss_pred cccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhh
Q 003691 474 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM 550 (802)
Q Consensus 474 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~ 550 (802)
..|+++.|.....+.+.+.+... . .....|||+|++||||+++|+++...+ +.+|+.++|..+-..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~----------A-~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY----------A-RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH----------h-CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 55778888877666666554321 1 223469999999999999999999775 468999999766321
Q ss_pred -----ccCccH--------HHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC-----
Q 003691 551 -----WFGESE--------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----- 612 (802)
Q Consensus 551 -----~vg~se--------~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----- 612 (802)
.+|..+ ..-..+|+.|.. ..||||||+.+. ..+...|+..|+...
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp--------------~~~Q~~Ll~~L~~~~~~r~g 340 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMP--------------LPLQTRLLRVLEEREVVRVG 340 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCC--------------HHHHHHHHHHHhcCcEEecC
Confidence 122111 011234554433 489999999974 345677777776422
Q ss_pred C----CCcEEEEEecCCC--CCCCccccCC---CCcc-eEEEecCCCH--HHHHHHHHHHhccC----CCCCccC-HHH-
Q 003691 613 A----KKTVFIIGATNRP--DIIDPALLRP---GRLD-QLIYIPLPDE--ASRLQIFKACLRKS----PISPDVD-LSA- 674 (802)
Q Consensus 613 ~----~~~v~vi~aTn~~--~~ld~allr~---gRf~-~~i~~~~p~~--~~r~~Il~~~l~~~----~~~~~~~-~~~- 674 (802)
+ .-++-||++||.. +.+.....|+ .|+. ..|++||... ++...+++.++++. .+.-+.+ +..
T Consensus 341 ~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 341 GTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred CCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 1 1235788888875 2233322221 1443 4566666543 34445556655443 2111111 111
Q ss_pred ------HHHHccCCCHHHHHHHHHHHHHHH
Q 003691 675 ------LARYTHGFSGADITEVCQRACKYA 698 (802)
Q Consensus 675 ------la~~t~g~sg~di~~~~~~a~~~a 698 (802)
|..+.==-+-++|++++++++..+
T Consensus 421 ~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 421 AGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 222211123488899998887754
No 380
>PRK04132 replication factor C small subunit; Provisional
Probab=98.54 E-value=1.3e-06 Score=104.23 Aligned_cols=154 Identities=20% Similarity=0.207 Sum_probs=111.3
Q ss_pred CCcEEEEEC--CCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhccchhHHHHHHHHHHHHhcC------CeEEEe
Q 003691 237 PPKGILLYG--PPGSGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA------PSIIFI 303 (802)
Q Consensus 237 ~~~~vLL~G--ppGtGKTtLar~la~~l-----~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~------p~il~i 303 (802)
|+-+-+..| |++.||||+|++||+++ +..++.+|+++..+ -..++.++..+.... ..|+||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 444556779 99999999999999997 45789999877422 235666665543322 259999
Q ss_pred cccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHH
Q 003691 304 DELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRI 383 (802)
Q Consensus 304 DEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~ 383 (802)
||+|.+.. ...+.|+..|+.... .+.+|.+||++..+.+++++ |+ ..+.|..|+..+-...|+.
T Consensus 637 DEaD~Lt~-----------~AQnALLk~lEep~~--~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 637 DEADALTQ-----------DAQQALRRTMEMFSS--NVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred ECcccCCH-----------HHHHHHHHHhhCCCC--CeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 99999842 245778888886443 66778889999999999987 65 6789999998888888876
Q ss_pred HhccCccc-cchhhHHHHhhcCCCchHHHH
Q 003691 384 HTKNMKLA-EDVDLERVAKDTHGYVGSDLA 412 (802)
Q Consensus 384 ~~~~~~l~-~~~~l~~la~~t~g~~~~dl~ 412 (802)
.+.+..+. ++..+..++..+.|-...-+.
T Consensus 701 I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 701 IAENEGLELTEEGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 66543332 344678888888876544443
No 381
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.51 E-value=3e-06 Score=89.93 Aligned_cols=173 Identities=17% Similarity=0.311 Sum_probs=96.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhCC-cEEE---Eec----hhhh----hhc----cch-hHHHHHHH---H-HHHHhcC
Q 003691 239 KGILLYGPPGSGKTLIARAVANETGA-FFFL---ING----PEIM----SKL----AGE-SESNLRKA---F-EEAEKNA 297 (802)
Q Consensus 239 ~~vLL~GppGtGKTtLar~la~~l~~-~~v~---v~~----~~l~----~~~----~g~-~~~~l~~v---f-~~a~~~~ 297 (802)
..++|+||+|+||||+++.+++.+.. .+.. +++ .++. ..+ .+. ....++.+ + .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35899999999999999999998763 2211 111 1111 111 111 11111222 2 2233456
Q ss_pred CeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhccc-CCCcE--EEEEecCCCCCC-C---HHhhccCCcceEEEeC
Q 003691 298 PSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-SRAHV--IVMGATNRPNSI-D---PALRRFGRFDREIDIG 370 (802)
Q Consensus 298 p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-~~~~v--ivI~~tn~~~~l-d---~al~r~~rf~~~i~i~ 370 (802)
+.++++||++.+.+. ....|..+.+... ....+ ++++.+.-.+.+ + ..+.+ |+...++++
T Consensus 124 ~~vliiDe~~~l~~~-----------~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLTPE-----------LLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCCHH-----------HHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeCC
Confidence 779999999876321 1222222222111 12222 232322211111 1 12333 666788999
Q ss_pred CCCHHHHHHHHHHHhccCc-----cccchhhHHHHhhcCCCchHHHHHHHHHHHHHhHHh
Q 003691 371 VPDEVGRLEILRIHTKNMK-----LAEDVDLERVAKDTHGYVGSDLAALCTEAALQCIRE 425 (802)
Q Consensus 371 ~P~~~~R~~Il~~~~~~~~-----l~~~~~l~~la~~t~g~~~~dl~~l~~~A~~~~~~~ 425 (802)
..+.++..+++...++... ...+..++.+...+.|+... +..+|..+...+...
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~ 249 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLE 249 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHc
Confidence 9999998888887665332 12345678889999998654 888888887766554
No 382
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.51 E-value=1.3e-06 Score=101.11 Aligned_cols=195 Identities=23% Similarity=0.274 Sum_probs=111.9
Q ss_pred cccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhC---CeEEEEeCcchhhh--
Q 003691 476 WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTM-- 550 (802)
Q Consensus 476 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~~-- 550 (802)
..++.|.....+.+.+.+... . .....|||+|++||||+++|+++...+. .+|+.++|..+...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~----------a-~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVV----------A-ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred CCceeecCHHHHHHHHHHHHH----------h-CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 455666666655555544321 1 2244699999999999999999998864 68999999876321
Q ss_pred ---ccCccHH-------HHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC--------
Q 003691 551 ---WFGESEA-------NVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-------- 612 (802)
Q Consensus 551 ---~vg~se~-------~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-------- 612 (802)
.+|.... .-...|+.|. ...||||||+.+. ..+...|+..++...
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~--------------~~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELP--------------LALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCC--------------HHHHHHHHHHHhcCCEeeCCCCc
Confidence 1221100 0011344443 2489999999984 345677777776432
Q ss_pred -CCCcEEEEEecCCCC-------CCCccccCCCCcc-eEEEecCCCH--HHHHHHHHHHhccC----CCC-CccCH---H
Q 003691 613 -AKKTVFIIGATNRPD-------IIDPALLRPGRLD-QLIYIPLPDE--ASRLQIFKACLRKS----PIS-PDVDL---S 673 (802)
Q Consensus 613 -~~~~v~vi~aTn~~~-------~ld~allr~gRf~-~~i~~~~p~~--~~r~~Il~~~l~~~----~~~-~~~~~---~ 673 (802)
...++-||++||+.- .+.+.|.. |+. ..|++|+... ++.-.+++.++++. ... ..++- .
T Consensus 318 ~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~ 395 (509)
T PRK05022 318 SLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQA 395 (509)
T ss_pred ceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 112578999998751 23333333 443 3355555432 23334444444322 111 12332 3
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHH
Q 003691 674 ALARYTHGFSGADITEVCQRACKYAIR 700 (802)
Q Consensus 674 ~la~~t~g~sg~di~~~~~~a~~~a~~ 700 (802)
.|..+.==-+-++|++++++|+..+..
T Consensus 396 ~L~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 396 ALLAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 333322112458999999999887754
No 383
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.51 E-value=2.4e-07 Score=95.33 Aligned_cols=115 Identities=20% Similarity=0.275 Sum_probs=73.0
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhh--------------------------------hh
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIM--------------------------------SK 277 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~l~--------------------------------~~ 277 (802)
++.+.+++.+.|.||+|||||||+|++++.+... .+.+++.++. +.
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR 101 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGR 101 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcC
Confidence 3456788999999999999999999999987532 3555543221 00
Q ss_pred c-----cc------------------------------hhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHH
Q 003691 278 L-----AG------------------------------ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVER 322 (802)
Q Consensus 278 ~-----~g------------------------------~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~ 322 (802)
+ .+ ...++-+..++.|..+.|.++++||-- +..+-
T Consensus 102 ~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPT----------s~LDi 171 (258)
T COG1120 102 YPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPT----------SHLDI 171 (258)
T ss_pred CcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCc----------cccCH
Confidence 0 00 023445667778888999999999943 22222
Q ss_pred HHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhc
Q 003691 323 RIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRR 359 (802)
Q Consensus 323 ~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r 359 (802)
.-.-.++.++..+....+..+|.+.+++ +-+++-
T Consensus 172 ~~Q~evl~ll~~l~~~~~~tvv~vlHDl---N~A~ry 205 (258)
T COG1120 172 AHQIEVLELLRDLNREKGLTVVMVLHDL---NLAARY 205 (258)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCH---HHHHHh
Confidence 3334455666666555556677777654 445543
No 384
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=4.1e-07 Score=98.43 Aligned_cols=132 Identities=20% Similarity=0.264 Sum_probs=92.0
Q ss_pred CCCceeeeecCCCCchhHHHHHHHHHhC-------------------------CeEEEEeCcch---hhhc-cCccHHHH
Q 003691 509 SPSKGVLFYGPPGCGKTLLAKAIANECQ-------------------------ANFISVKGPEL---LTMW-FGESEANV 559 (802)
Q Consensus 509 ~~~~gill~GppGtGKT~lakala~~~~-------------------------~~~i~v~~~~l---~~~~-vg~se~~i 559 (802)
+.+..+||+||+|+|||++|+.+|..+. .+|+.+....- .++. -.-+-..|
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 5566799999999999999999998863 23444543110 0000 00124456
Q ss_pred HHHHHHHhh----CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccC
Q 003691 560 REIFDKARQ----SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLR 635 (802)
Q Consensus 560 ~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr 635 (802)
|.+.+.+.. ....|+++|+++.+- ....+.||+.|+... .++.+|.+|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld--------------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN--------------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC--------------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH
Confidence 766665543 445799999998873 345678888888754 345667788888899998887
Q ss_pred CCCcceEEEecCCCHHHHHHHHHH
Q 003691 636 PGRLDQLIYIPLPDEASRLQIFKA 659 (802)
Q Consensus 636 ~gRf~~~i~~~~p~~~~r~~Il~~ 659 (802)
|+. .+.|++|+.++..+.++.
T Consensus 163 --Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 --RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred --Hhh-hhcCCCCCHHHHHHHHHh
Confidence 885 889999999887777754
No 385
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.49 E-value=5.9e-07 Score=106.22 Aligned_cols=156 Identities=24% Similarity=0.355 Sum_probs=94.6
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC------------------
Q 003691 202 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG------------------ 263 (802)
Q Consensus 202 ~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~------------------ 263 (802)
.|.+|.|++..+..+.-....| ...+|||.|++|||||++|++|+..++
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 5778999998887664443221 124699999999999999999999883
Q ss_pred -----------------CcEEEEechhhhhhccchh--HHHHH---HHHHH--HHhcCCeEEEecccccccCCCCCCchh
Q 003691 264 -----------------AFFFLINGPEIMSKLAGES--ESNLR---KAFEE--AEKNAPSIIFIDELDSIAPKREKTHGE 319 (802)
Q Consensus 264 -----------------~~~v~v~~~~l~~~~~g~~--~~~l~---~vf~~--a~~~~p~il~iDEid~l~~~~~~~~~~ 319 (802)
.+|+.+.+........|.. ...+. ..++. .......+|||||++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------- 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------- 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH--------
Confidence 2344443322111111211 00010 00000 0011235999999998742
Q ss_pred HHHHHHHHHHHhhhcc-----------cCCCcEEEEEecCCCC-CCCHHhhccCCcceEEEeCCCC-HHHHHHHHHH
Q 003691 320 VERRIVSQLLTLMDGL-----------KSRAHVIVMGATNRPN-SIDPALRRFGRFDREIDIGVPD-EVGRLEILRI 383 (802)
Q Consensus 320 ~~~~v~~~Ll~~ld~~-----------~~~~~vivI~~tn~~~-~ld~al~r~~rf~~~i~i~~P~-~~~R~~Il~~ 383 (802)
.+...|+..|+.- .....+.+|+++|..+ .+.++|.. ||...+.++.+. .+++.+++..
T Consensus 141 ---~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 141 ---HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ---HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 3456677777531 1124588899988643 57778877 888888887764 5667777754
No 386
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.49 E-value=1.4e-06 Score=104.70 Aligned_cols=197 Identities=23% Similarity=0.316 Sum_probs=112.8
Q ss_pred cccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhh-
Q 003691 474 VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT- 549 (802)
Q Consensus 474 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~- 549 (802)
..++++.|.....+.+.+.+.... .....|+|+|++|||||++|+++...+ +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 356678887776666655544211 223469999999999999999999876 46899999976532
Q ss_pred ----hccCc--------cHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC-----
Q 003691 550 ----MWFGE--------SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----- 612 (802)
Q Consensus 550 ----~~vg~--------se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----- 612 (802)
..+|. ..... ..|+.+. ...||||||+.+. ..+...|+..|+...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~-g~le~a~---~GtL~Ldei~~L~--------------~~~Q~~L~~~l~~~~~~~~g 503 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRI-GRFELAD---KSSLFLDEVGDMP--------------LELQPKLLRVLQEQEFERLG 503 (686)
T ss_pred HhhhhhcCcccccccccccchh-hHHHhcC---CCeEEEechhhCC--------------HHHHHHHHHHHHhCCEEeCC
Confidence 12221 11122 2344443 3599999999973 346677777775432
Q ss_pred ----CCCcEEEEEecCCC--CCCCccccCCC---CcceEEEecCCCHHHH----HHHHHHHhccC----CCCC-ccC---
Q 003691 613 ----AKKTVFIIGATNRP--DIIDPALLRPG---RLDQLIYIPLPDEASR----LQIFKACLRKS----PISP-DVD--- 671 (802)
Q Consensus 613 ----~~~~v~vi~aTn~~--~~ld~allr~g---Rf~~~i~~~~p~~~~r----~~Il~~~l~~~----~~~~-~~~--- 671 (802)
...++-+|++|+.. +.+....+|+. |+. .+.+..|...+| -.+++.++.+. .... .+.
T Consensus 504 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~a 582 (686)
T PRK15429 504 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAET 582 (686)
T ss_pred CCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 01357889999875 22222222210 333 333444444444 33445544332 2111 122
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q 003691 672 LSALARYTHGFSGADITEVCQRACKYAIR 700 (802)
Q Consensus 672 ~~~la~~t~g~sg~di~~~~~~a~~~a~~ 700 (802)
+..|..+.==-+-+++++++++|+..+-.
T Consensus 583 l~~L~~y~WPGNvrEL~~~i~~a~~~~~~ 611 (686)
T PRK15429 583 LRTLSNMEWPGNVRELENVIERAVLLTRG 611 (686)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhCCC
Confidence 33333322112458999999999876543
No 387
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=1.6e-06 Score=94.60 Aligned_cols=147 Identities=14% Similarity=0.206 Sum_probs=99.2
Q ss_pred cccccC-hHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc----------------
Q 003691 203 YDDVGG-VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 265 (802)
Q Consensus 203 ~~~i~G-~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------------- 265 (802)
|+.|.| ++..++.++..+.. -..+..+||+||+|+||+++|+++|+.+-..
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 556666 88888888887753 0235568999999999999999999886321
Q ss_pred --------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhh
Q 003691 266 --------FFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMD 333 (802)
Q Consensus 266 --------~v~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 333 (802)
+..+... +. .-.-..++.+.+.+. .....|++|||+|.+. ....+.|++.++
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-----------~~a~NaLLK~LE 135 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-----------ASAANSLLKFLE 135 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-----------HHHHHHHHHHhc
Confidence 1111100 00 011245566555443 2234699999998773 234577888888
Q ss_pred cccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHH
Q 003691 334 GLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILR 382 (802)
Q Consensus 334 ~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~ 382 (802)
.... .+++|.+|+.+..+.+++++ |. ..+++..|+.++-.++|.
T Consensus 136 EPp~--~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 136 EPSG--GTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred CCCC--CceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHH
Confidence 6443 55566677788899999988 55 568899999888777775
No 388
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.46 E-value=1.5e-06 Score=100.49 Aligned_cols=197 Identities=18% Similarity=0.287 Sum_probs=110.0
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhh
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 549 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~ 549 (802)
..+|+++.|.....+.+.+.+.. +. .....++|+|++||||+++|+++...+ ..+|+.++|+.+..
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~----------~A-~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARK----------LA-MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred cccccceeECCHHHHHHHHHHHH----------Hh-CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 34667777766554444433321 01 123459999999999999999987765 36899999987642
Q ss_pred h-----ccCccH-------HHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC-----
Q 003691 550 M-----WFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----- 612 (802)
Q Consensus 550 ~-----~vg~se-------~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----- 612 (802)
. .+|... ..-..+|+.|.. ..||||||+.+. ..+...|++.++...
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~LdeI~~L~--------------~~~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLLDEIGEMS--------------PRMQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEEeChhhCC--------------HHHHHHHHHHHhcCCcccCC
Confidence 1 112110 001123554433 489999999974 345566777765421
Q ss_pred ----CCCcEEEEEecCCC--CC-----CCccccCCCCcc-eEEEecCCCH--HHHHHHHHHHhc----cCCCC-CccCHH
Q 003691 613 ----AKKTVFIIGATNRP--DI-----IDPALLRPGRLD-QLIYIPLPDE--ASRLQIFKACLR----KSPIS-PDVDLS 673 (802)
Q Consensus 613 ----~~~~v~vi~aTn~~--~~-----ld~allr~gRf~-~~i~~~~p~~--~~r~~Il~~~l~----~~~~~-~~~~~~ 673 (802)
...++-||+||+.+ +. +.+.|.. |+. ..|.+|+... +....+++.+++ +.... ..+.-+
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~ 409 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD 409 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 11356788888765 22 3344444 654 3455555533 233334444443 22221 123333
Q ss_pred HHHHHc-cCC--CHHHHHHHHHHHHHHHH
Q 003691 674 ALARYT-HGF--SGADITEVCQRACKYAI 699 (802)
Q Consensus 674 ~la~~t-~g~--sg~di~~~~~~a~~~a~ 699 (802)
.+.... ..+ +-++|++++.+|+..+-
T Consensus 410 a~~~L~~y~WPGNvreL~nvl~~a~~~~~ 438 (520)
T PRK10820 410 LNTVLTRYGWPGNVRQLKNAIYRALTQLE 438 (520)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhCC
Confidence 333222 223 45788888988887653
No 389
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.46 E-value=9e-07 Score=86.49 Aligned_cols=110 Identities=29% Similarity=0.496 Sum_probs=71.8
Q ss_pred CceeeeecCCCCchhHHHHHHHHHhC---CeEEEEeCcchhhh-----ccCccH-------HHHHHHHHHHhhCCCeEEE
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTM-----WFGESE-------ANVREIFDKARQSAPCVLF 575 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~~-----~vg~se-------~~i~~lf~~a~~~~p~il~ 575 (802)
+..|||+|++||||+++|+++...+. .+|+.|+|+.+... .+|... ..-.-+|+.|... .||
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~ 98 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG---TLF 98 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS---EEE
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce---EEe
Confidence 35699999999999999999998764 68999999876422 222211 1122566776655 999
Q ss_pred EcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC-----C----CCcEEEEEecCCCCCCCccccCCCCcc
Q 003691 576 FDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----A----KKTVFIIGATNRPDIIDPALLRPGRLD 640 (802)
Q Consensus 576 iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----~----~~~v~vi~aTn~~~~ld~allr~gRf~ 640 (802)
||||+.+. ..+...|++.|+... . .-++-||++||.+ |...+.. |+|.
T Consensus 99 Ld~I~~L~--------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~--l~~~v~~-g~fr 155 (168)
T PF00158_consen 99 LDEIEDLP--------------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD--LEELVEQ-GRFR 155 (168)
T ss_dssp EETGGGS---------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHHHHHT-TSS-
T ss_pred ecchhhhH--------------HHHHHHHHHHHhhchhccccccccccccceEEeecCcC--HHHHHHc-CCCh
Confidence 99999984 457778888887431 1 1268899999963 3343333 5664
No 390
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.44 E-value=4.7e-07 Score=92.76 Aligned_cols=115 Identities=20% Similarity=0.297 Sum_probs=75.4
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcE--EEEech-----------------------------hhh--h--
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--FLINGP-----------------------------EIM--S-- 276 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~--v~v~~~-----------------------------~l~--~-- 276 (802)
++.+.++.-+.|+||+|+|||||+|++.+.+.... +.+.+. +++ +
T Consensus 24 ~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~ 103 (254)
T COG1121 24 SLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRY 103 (254)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCc
Confidence 34567888999999999999999999999654221 222111 000 0
Q ss_pred -------------------------------hccch--hHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHH
Q 003691 277 -------------------------------KLAGE--SESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERR 323 (802)
Q Consensus 277 -------------------------------~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 323 (802)
+..++ ..+.-|..++.|..+.|.++++|| +...++..
T Consensus 104 ~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDE----------P~~gvD~~ 173 (254)
T COG1121 104 GKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDE----------PFTGVDVA 173 (254)
T ss_pred ccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecC----------CcccCCHH
Confidence 00010 234457778888899999999999 33334445
Q ss_pred HHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHh
Q 003691 324 IVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPAL 357 (802)
Q Consensus 324 v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al 357 (802)
....+.+++..++.. ...|+..+++.+.+..-.
T Consensus 174 ~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~ 206 (254)
T COG1121 174 GQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYF 206 (254)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhC
Confidence 556677777777777 667777888776554433
No 391
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=5.6e-07 Score=96.16 Aligned_cols=97 Identities=36% Similarity=0.589 Sum_probs=72.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hccch-hHHHHHHHHHHHH----hcCCeEEEecccccccC
Q 003691 238 PKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMS-KLAGE-SESNLRKAFEEAE----KNAPSIIFIDELDSIAP 311 (802)
Q Consensus 238 ~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~~l~~-~~~g~-~~~~l~~vf~~a~----~~~p~il~iDEid~l~~ 311 (802)
..+|||.||+|||||.|++.||+.++.+|..-+|..+.. .|+|+ .+..+..+++.|. ..+-.|+||||+|.|..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 457999999999999999999999999999999988864 57775 3556677777653 34567999999999984
Q ss_pred CCCC-Cch-hH-HHHHHHHHHHhhhc
Q 003691 312 KREK-THG-EV-ERRIVSQLLTLMDG 334 (802)
Q Consensus 312 ~~~~-~~~-~~-~~~v~~~Ll~~ld~ 334 (802)
.... ... ++ ..-+...|+.++++
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcc
Confidence 3321 111 11 23456778888875
No 392
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.42 E-value=2.8e-07 Score=89.94 Aligned_cols=111 Identities=17% Similarity=0.220 Sum_probs=69.7
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh--------hcc-----chhHHHHHHHHHHHHhc
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS--------KLA-----GESESNLRKAFEEAEKN 296 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~l~~--------~~~-----g~~~~~l~~vf~~a~~~ 296 (802)
++.+.+++.+.|.||+|+|||||+++|++..... -+.+++.++.. ... =...++-+..+..+...
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999999986532 24555433211 111 11234556677888888
Q ss_pred CCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC
Q 003691 297 APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 353 (802)
Q Consensus 297 ~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~l 353 (802)
.|.++++||...-+ +......+...+..+..+ ...+|.+|++++.+
T Consensus 100 ~p~illlDEP~~~L----------D~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~ 145 (163)
T cd03216 100 NARLLILDEPTAAL----------TPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEV 145 (163)
T ss_pred CCCEEEEECCCcCC----------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHH
Confidence 99999999954332 223334444555444333 33455567765433
No 393
>PRK08116 hypothetical protein; Validated
Probab=98.42 E-value=1.3e-06 Score=92.22 Aligned_cols=100 Identities=20% Similarity=0.407 Sum_probs=60.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhccch----hHHHHHHHHHHHHhcCCeEEEeccccccc
Q 003691 238 PKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGE----SESNLRKAFEEAEKNAPSIIFIDELDSIA 310 (802)
Q Consensus 238 ~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~----~~~~l~~vf~~a~~~~p~il~iDEid~l~ 310 (802)
+.+++|+|++|||||+||.++++.+ +.+++.++.++++...... .......+++.. ....+|+|||+...-
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCC
Confidence 4579999999999999999999986 6678888887776543211 111122333332 234699999986421
Q ss_pred CCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCC
Q 003691 311 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR 349 (802)
Q Consensus 311 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~ 349 (802)
. . ......|..+++........+|+ |||.
T Consensus 192 ~------t---~~~~~~l~~iin~r~~~~~~~Ii-TsN~ 220 (268)
T PRK08116 192 D------T---EWAREKVYNIIDSRYRKGLPTIV-TTNL 220 (268)
T ss_pred C------C---HHHHHHHHHHHHHHHHCCCCEEE-ECCC
Confidence 1 1 12335566666654333333444 5554
No 394
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.41 E-value=4.3e-06 Score=95.60 Aligned_cols=173 Identities=18% Similarity=0.235 Sum_probs=99.0
Q ss_pred CceeeeecCCCCchhHHHHHHHHHhCCeEEEEeCcchh-------hhccCccHH-----HHHHHHH-----HHhh-----
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------TMWFGESEA-----NVREIFD-----KARQ----- 568 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~~~~~i~v~~~~l~-------~~~vg~se~-----~i~~lf~-----~a~~----- 568 (802)
.+-++|+|||||||||+++++|.+++..+.....+... ..|.+.... .-...|+ .++.
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~ 124 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSM 124 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccc
Confidence 34588999999999999999999999888776433221 111111110 0011222 1111
Q ss_pred ------CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEe-c------CCC--------C
Q 003691 569 ------SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGA-T------NRP--------D 627 (802)
Q Consensus 569 ------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~a-T------n~~--------~ 627 (802)
..+.||++||+=.++.. ...++-+.|.+.+..-. ...+++|.+ + |.. .
T Consensus 125 ~g~~~~~~~kvILVEDlPN~~~~----------~~~~f~~~L~~~l~~~~-~~PlV~iiSe~~~~~~~~~~~~~~~t~~~ 193 (519)
T PF03215_consen 125 SGSNSSSNKKVILVEDLPNVFHR----------DTSRFREALRQYLRSSR-CLPLVFIISETESLSGDNSYRSNSFTAER 193 (519)
T ss_pred cCCCcCCCceEEEeeccccccch----------hHHHHHHHHHHHHHcCC-CCCEEEEEecccccCCCCcccccchhhhh
Confidence 24579999998754321 12334444444444321 116666666 1 111 1
Q ss_pred CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccC--------CCCCccC-HHHHHHHccCCCHHHHHHHHHHHHHHH
Q 003691 628 IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS--------PISPDVD-LSALARYTHGFSGADITEVCQRACKYA 698 (802)
Q Consensus 628 ~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~--------~~~~~~~-~~~la~~t~g~sg~di~~~~~~a~~~a 698 (802)
.+.+.++.-.++ .+|.|.+-...-.++-|+..+... ......+ ++.|++. |++||+.++....+.|
T Consensus 194 L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~----s~GDIRsAIn~LQf~~ 268 (519)
T PF03215_consen 194 LFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAES----SNGDIRSAINNLQFWC 268 (519)
T ss_pred ccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHh----cCchHHHHHHHHHHHh
Confidence 455666652244 488998888776666666555432 1222122 5566664 4469999999998888
Q ss_pred H
Q 003691 699 I 699 (802)
Q Consensus 699 ~ 699 (802)
.
T Consensus 269 ~ 269 (519)
T PF03215_consen 269 L 269 (519)
T ss_pred c
Confidence 8
No 395
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.41 E-value=4.4e-06 Score=97.93 Aligned_cols=53 Identities=28% Similarity=0.417 Sum_probs=44.8
Q ss_pred cCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc
Q 003691 198 LNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF 265 (802)
Q Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~ 265 (802)
.++..++++.|+++.++.++..+.. +.+++|+|||||||||+++++++.++..
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4566788999999999888877753 3589999999999999999999998754
No 396
>PF13173 AAA_14: AAA domain
Probab=98.39 E-value=1.8e-06 Score=80.69 Aligned_cols=119 Identities=20% Similarity=0.267 Sum_probs=70.2
Q ss_pred ceeeeecCCCCchhHHHHHHHHHhC--CeEEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCC
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSS 589 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~~--~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~ 589 (802)
+-++|+||.||||||+++.++..+. .+++.++..+.......... +...|.+.......++|||||+.+-.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~~----- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLPD----- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhcc-----
Confidence 3489999999999999999998876 77788877765432111111 22333332222557999999988721
Q ss_pred CCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCC---ccccCCCCcceEEEecCCCHHH
Q 003691 590 TGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIID---PALLRPGRLDQLIYIPLPDEAS 652 (802)
Q Consensus 590 ~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld---~allr~gRf~~~i~~~~p~~~~ 652 (802)
....+..+.. .. .++-|+.|++....+. ...+ +||.. .+++.|.+..+
T Consensus 76 -------~~~~lk~l~d---~~---~~~~ii~tgS~~~~l~~~~~~~l-~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 76 -------WEDALKFLVD---NG---PNIKIILTGSSSSLLSKDIAESL-AGRVI-EIELYPLSFRE 126 (128)
T ss_pred -------HHHHHHHHHH---hc---cCceEEEEccchHHHhhcccccC-CCeEE-EEEECCCCHHH
Confidence 2333333333 11 2334444444333331 1223 37886 77888887765
No 397
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.39 E-value=2.1e-06 Score=95.37 Aligned_cols=199 Identities=24% Similarity=0.328 Sum_probs=119.1
Q ss_pred ccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhC---CeEEEEeCcchhhh-
Q 003691 475 SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTM- 550 (802)
Q Consensus 475 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~~- 550 (802)
...++.|.....+++.+.+..- ......||+.|++||||-++|++|...+. .||+.|||..+-..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 3455667666666666554421 12234599999999999999999999875 59999999766321
Q ss_pred ----ccCcc--------HHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC-----C
Q 003691 551 ----WFGES--------EANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----A 613 (802)
Q Consensus 551 ----~vg~s--------e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----~ 613 (802)
.+|.. .+. .-.|+.|... .||+|||..+. ..+...||..|..-. +
T Consensus 208 ~ESELFGhekGAFTGA~~~r-~G~fE~A~GG---TLfLDEI~~mp--------------l~~Q~kLLRvLqe~~~~rvG~ 269 (464)
T COG2204 208 LESELFGHEKGAFTGAITRR-IGRFEQANGG---TLFLDEIGEMP--------------LELQVKLLRVLQEREFERVGG 269 (464)
T ss_pred HHHHhhcccccCcCCccccc-CcceeEcCCc---eEEeeccccCC--------------HHHHHHHHHHHHcCeeEecCC
Confidence 12211 111 1245555544 99999998863 456777888777432 1
Q ss_pred ----CCcEEEEEecCCC--CCCCccccCCC---CcceEEEecCCCHHHHH----HHHHHHhcc----CCC-CCccCHHHH
Q 003691 614 ----KKTVFIIGATNRP--DIIDPALLRPG---RLDQLIYIPLPDEASRL----QIFKACLRK----SPI-SPDVDLSAL 675 (802)
Q Consensus 614 ----~~~v~vi~aTn~~--~~ld~allr~g---Rf~~~i~~~~p~~~~r~----~Il~~~l~~----~~~-~~~~~~~~l 675 (802)
.-+|-||+|||+. +.+.....|.. |+. ++.+..|...+|. -++++++++ ... ...++-+.+
T Consensus 270 ~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~ 348 (464)
T COG2204 270 NKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEAL 348 (464)
T ss_pred CcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 1258899999985 22222222211 443 5555555554443 344444433 222 123444444
Q ss_pred HHHc-cCC--CHHHHHHHHHHHHHHHHHHHH
Q 003691 676 ARYT-HGF--SGADITEVCQRACKYAIRENI 703 (802)
Q Consensus 676 a~~t-~g~--sg~di~~~~~~a~~~a~~~~~ 703 (802)
+... ..+ +-++|+|++++++..+-...+
T Consensus 349 ~~L~~y~WPGNVREL~N~ver~~il~~~~~i 379 (464)
T COG2204 349 AALLAYDWPGNVRELENVVERAVILSEGPEI 379 (464)
T ss_pred HHHHhCCCChHHHHHHHHHHHHHhcCCcccc
Confidence 4432 334 348999999999888765543
No 398
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.39 E-value=6e-06 Score=96.45 Aligned_cols=53 Identities=28% Similarity=0.523 Sum_probs=44.0
Q ss_pred ecccccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhC
Q 003691 469 VEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (802)
Q Consensus 469 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~ 536 (802)
...|+..|+++.|+++++..|...+.. +++++|+||||||||+++++++..+.
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 446778999999999999888765542 23699999999999999999998875
No 399
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.38 E-value=1e-06 Score=88.44 Aligned_cols=111 Identities=21% Similarity=0.298 Sum_probs=74.5
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh---------------------------------
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS--------------------------------- 276 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~l~~--------------------------------- 276 (802)
++.+.+++.+.|+|++|||||||+|++++..... -+.++|..+..
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~ 106 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILS 106 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHh
Confidence 4567889999999999999999999999875332 23344321100
Q ss_pred ------------------------------hccch--hHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHH
Q 003691 277 ------------------------------KLAGE--SESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRI 324 (802)
Q Consensus 277 ------------------------------~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v 324 (802)
.++.+ ..+.-|-.+..|....|.+|++||.- +..+..+
T Consensus 107 Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt----------SaLD~si 176 (252)
T COG1124 107 EPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPT----------SALDVSV 176 (252)
T ss_pred hhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCch----------hhhcHHH
Confidence 01110 22344566667777789999999943 3444566
Q ss_pred HHHHHHhhhcccCCCcEEEEEecCCCCC
Q 003691 325 VSQLLTLMDGLKSRAHVIVMGATNRPNS 352 (802)
Q Consensus 325 ~~~Ll~~ld~~~~~~~vivI~~tn~~~~ 352 (802)
..++++++..++...+..++..+++...
T Consensus 177 Qa~IlnlL~~l~~~~~lt~l~IsHdl~~ 204 (252)
T COG1124 177 QAQILNLLLELKKERGLTYLFISHDLAL 204 (252)
T ss_pred HHHHHHHHHHHHHhcCceEEEEeCcHHH
Confidence 7778888877777777777777776543
No 400
>PRK09183 transposase/IS protein; Provisional
Probab=98.37 E-value=1.3e-06 Score=91.69 Aligned_cols=75 Identities=24% Similarity=0.487 Sum_probs=52.1
Q ss_pred CCCCcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhccc-hhHHHHHHHHHHHHhcCCeEEEeccccccc
Q 003691 235 VKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAG-ESESNLRKAFEEAEKNAPSIIFIDELDSIA 310 (802)
Q Consensus 235 i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g-~~~~~l~~vf~~a~~~~p~il~iDEid~l~ 310 (802)
+..+.+++|+||||||||+|+.+++... +..+..+++.++...... .....+..+++.. ...+.+++|||++...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 3567899999999999999999997664 556677777776543221 1112344556554 2456799999998653
No 401
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.37 E-value=1.2e-06 Score=95.90 Aligned_cols=195 Identities=23% Similarity=0.306 Sum_probs=115.4
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhC---CeEEEEeCcchhh
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLT 549 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~ 549 (802)
......|+|......++.+.|... ......|||.|.+||||-.+|++|...+. .||+.+||+.+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 455667888877776666655431 12334699999999999999999999874 6899999977632
Q ss_pred h-----ccCccHH----H---HHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC-----
Q 003691 550 M-----WFGESEA----N---VREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----- 612 (802)
Q Consensus 550 ~-----~vg~se~----~---i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----- 612 (802)
. .+|.-.. . -+--|+.|.. .-+|+|||..+. -.+...||..|...+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGelP--------------L~lQaKLLRvLQegEieRvG 350 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGELP--------------LALQAKLLRVLQEGEIERVG 350 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccCC--------------HHHHHHHHHHHhhcceeecC
Confidence 1 1121110 0 1122444433 389999997763 446677887776532
Q ss_pred CC----CcEEEEEecCCCCCCCccccCCCCcce-------EEEecCCCHHHHH--------HHHHHHhccCCCC-CccCH
Q 003691 613 AK----KTVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEASRL--------QIFKACLRKSPIS-PDVDL 672 (802)
Q Consensus 613 ~~----~~v~vi~aTn~~~~ld~allr~gRf~~-------~i~~~~p~~~~r~--------~Il~~~l~~~~~~-~~~~~ 672 (802)
+. -.|-||||||+ .|..++.. |+|-. ++.+..|-.-+|. ..++.+-++.... ...+-
T Consensus 351 ~~r~ikVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~ 427 (550)
T COG3604 351 GDRTIKVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSA 427 (550)
T ss_pred CCceeEEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCH
Confidence 11 25889999998 34444443 55532 2333334333331 1223333333331 12222
Q ss_pred HHHHHHc-cCC--CHHHHHHHHHHHHHHH
Q 003691 673 SALARYT-HGF--SGADITEVCQRACKYA 698 (802)
Q Consensus 673 ~~la~~t-~g~--sg~di~~~~~~a~~~a 698 (802)
+.+.... ..| +-+++++++++|+..|
T Consensus 428 ~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 428 EALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 3333221 234 4589999999999988
No 402
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.36 E-value=8.7e-06 Score=83.19 Aligned_cols=98 Identities=20% Similarity=0.189 Sum_probs=66.3
Q ss_pred EEEEecCC------------CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccC-HHHHHHHccCCCH
Q 003691 618 FIIGATNR------------PDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHGFSG 684 (802)
Q Consensus 618 ~vi~aTn~------------~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-~~~la~~t~g~sg 684 (802)
+++++||| |.-|+-.++. |+- +|...|++.++..+||+..+..-.+.-+.| +..|......-|=
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsL 395 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSL 395 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hhh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhH
Confidence 67778886 3456666665 663 778889999999999999887654443222 4455555444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcccccccccccccccHHHHHHHHhhc
Q 003691 685 ADITEVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYA 743 (802)
Q Consensus 685 ~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 743 (802)
+.-.+++..|.+.|.++. ...+..+|++.+..-.
T Consensus 396 RYai~Lit~a~~~~~krk-------------------------~~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 396 RYAIHLITAASLVCLKRK-------------------------GKVVEVDDIERVYRLF 429 (454)
T ss_pred HHHHHHHHHHHHHHHHhc-------------------------CceeehhHHHHHHHHH
Confidence 666677888888887765 2257777787776543
No 403
>PRK08181 transposase; Validated
Probab=98.35 E-value=1e-06 Score=92.43 Aligned_cols=71 Identities=24% Similarity=0.363 Sum_probs=50.5
Q ss_pred CceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhhccC-ccHHHHHHHHHHHhhCCCeEEEEcccchhh
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSIA 583 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~vg-~se~~i~~lf~~a~~~~p~il~iDEid~l~ 583 (802)
..+++|+||||||||+||.+++.++ +...+.++.++++..+.. ........+++... .+.+|+|||++...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEecccccc
Confidence 4579999999999999999999765 566777888888765421 11123344555443 34699999998753
No 404
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.35 E-value=2.9e-05 Score=90.11 Aligned_cols=78 Identities=23% Similarity=0.236 Sum_probs=48.8
Q ss_pred cCCCCceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhh--------------hc--------cC------cc
Q 003691 507 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT--------------MW--------FG------ES 555 (802)
Q Consensus 507 ~~~~~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~--------------~~--------vg------~s 555 (802)
|+..+..++++|+||+|||+++..++... +.+.+++...+-.. .+ .. ..
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 56666669999999999999999887653 44555554322110 00 00 01
Q ss_pred HHHHHHHHHHHhhCCCeEEEEcccchhhh
Q 003691 556 EANVREIFDKARQSAPCVLFFDELDSIAT 584 (802)
Q Consensus 556 e~~i~~lf~~a~~~~p~il~iDEid~l~~ 584 (802)
+..+..+-+......+.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 22333444455556788999999988864
No 405
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.35 E-value=6.3e-07 Score=96.43 Aligned_cols=110 Identities=21% Similarity=0.344 Sum_probs=75.3
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh---------------------------------
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS--------------------------------- 276 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~l~~--------------------------------- 276 (802)
++.+.+++.+.|.|||||||||++|+||+..... -+.++|.++.+
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~ 104 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKV 104 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhh
Confidence 4567888899999999999999999999865322 24444332210
Q ss_pred ---------------------------hccc--hhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHH
Q 003691 277 ---------------------------KLAG--ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 327 (802)
Q Consensus 277 ---------------------------~~~g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 327 (802)
.+.. ...++-|..+..|....|.++++|| +.+..+..+..+
T Consensus 105 ~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE----------PlSaLD~kLR~~ 174 (352)
T COG3842 105 RKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE----------PLSALDAKLREQ 174 (352)
T ss_pred cCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC----------cccchhHHHHHH
Confidence 0000 0234456677777788999999999 445556666777
Q ss_pred HHHhhhcccCCCcEEEEEecCCCC
Q 003691 328 LLTLMDGLKSRAHVIVMGATNRPN 351 (802)
Q Consensus 328 Ll~~ld~~~~~~~vivI~~tn~~~ 351 (802)
+...+..+.....+.+|..|++.+
T Consensus 175 mr~Elk~lq~~~giT~i~VTHDqe 198 (352)
T COG3842 175 MRKELKELQRELGITFVYVTHDQE 198 (352)
T ss_pred HHHHHHHHHHhcCCeEEEEECCHH
Confidence 777777776666778888888764
No 406
>PRK09183 transposase/IS protein; Provisional
Probab=98.35 E-value=1.1e-06 Score=92.35 Aligned_cols=71 Identities=24% Similarity=0.412 Sum_probs=50.4
Q ss_pred CceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhhccC-ccHHHHHHHHHHHhhCCCeEEEEcccchh
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSI 582 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~vg-~se~~i~~lf~~a~~~~p~il~iDEid~l 582 (802)
..+++|+||||||||+||.+++... +.....++.+++...+.. .....+..+|+... ..+.+++|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccC
Confidence 4569999999999999999998764 556667777777644321 11223556676543 45579999999775
No 407
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.35 E-value=2.6e-06 Score=79.61 Aligned_cols=98 Identities=22% Similarity=0.405 Sum_probs=61.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh--------CCcEEEEechhhhh-------------h-ccc--hhHHHHHHHHHHH
Q 003691 238 PKGILLYGPPGSGKTLIARAVANET--------GAFFFLINGPEIMS-------------K-LAG--ESESNLRKAFEEA 293 (802)
Q Consensus 238 ~~~vLL~GppGtGKTtLar~la~~l--------~~~~v~v~~~~l~~-------------~-~~g--~~~~~l~~vf~~a 293 (802)
...++|+||+|+|||++++.++..+ ...++.++++...+ . ... ........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 5679999999999999999999987 66778887754321 0 011 1233344445555
Q ss_pred HhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEec
Q 003691 294 EKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGAT 347 (802)
Q Consensus 294 ~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~t 347 (802)
......+|+|||+|.+. + ....+.|..+++ .....++++|+.
T Consensus 84 ~~~~~~~lviDe~~~l~-~---------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S---------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T---------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C---------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 55555699999999874 1 345566666666 333456666654
No 408
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=2e-06 Score=91.71 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=27.1
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANET 262 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 262 (802)
++.|-.++...|+||+|-|||||++.||...
T Consensus 284 ~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ra 314 (807)
T KOG0066|consen 284 SLTIVYGRRYGLVGPNGMGKTTLLKHIAARA 314 (807)
T ss_pred ceEEEecceecccCCCCCchHHHHHHHHhhh
Confidence 4556788999999999999999999998763
No 409
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.34 E-value=1.6e-06 Score=85.25 Aligned_cols=108 Identities=19% Similarity=0.372 Sum_probs=71.1
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC--CcEEEEechhh-----------------------------------
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFLINGPEI----------------------------------- 274 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~--~~~v~v~~~~l----------------------------------- 274 (802)
++.+.+++.+.|+||+|||||||+|+|.+.-. .-.+.++|..+
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~la 101 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA 101 (240)
T ss_pred ceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhh
Confidence 34568899999999999999999999986532 12344544211
Q ss_pred ----------------------------hhhccch--hHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHH
Q 003691 275 ----------------------------MSKLAGE--SESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRI 324 (802)
Q Consensus 275 ----------------------------~~~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v 324 (802)
...|+.+ ..++-|..+..|....|.++++||.- +..+...
T Consensus 102 p~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPT----------SALDPEl 171 (240)
T COG1126 102 PVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPT----------SALDPEL 171 (240)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCc----------ccCCHHH
Confidence 0112221 34556777888888899999999954 3344556
Q ss_pred HHHHHHhhhcccCCCcEEEEEecCCC
Q 003691 325 VSQLLTLMDGLKSRAHVIVMGATNRP 350 (802)
Q Consensus 325 ~~~Ll~~ld~~~~~~~vivI~~tn~~ 350 (802)
+...+..|..+...+ ...+..|+..
T Consensus 172 v~EVL~vm~~LA~eG-mTMivVTHEM 196 (240)
T COG1126 172 VGEVLDVMKDLAEEG-MTMIIVTHEM 196 (240)
T ss_pred HHHHHHHHHHHHHcC-CeEEEEechh
Confidence 677777777766654 4444456654
No 410
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.34 E-value=1.9e-06 Score=86.97 Aligned_cols=121 Identities=25% Similarity=0.410 Sum_probs=74.7
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhh----------------------------------
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIM---------------------------------- 275 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~l~---------------------------------- 275 (802)
+|.+.+++.+.|.||+|||||||+..+++..... .+.+++.++.
T Consensus 25 ~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv 104 (226)
T COG1136 25 NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENV 104 (226)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHH
Confidence 4567889999999999999999999999765332 2344432110
Q ss_pred -------------------------------h-hccc--hhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHH
Q 003691 276 -------------------------------S-KLAG--ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVE 321 (802)
Q Consensus 276 -------------------------------~-~~~g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~ 321 (802)
. +++. ...++-|..+..|....|.+|+-|| +.+..+
T Consensus 105 ~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADE----------PTgnLD 174 (226)
T COG1136 105 ELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADE----------PTGNLD 174 (226)
T ss_pred HhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeC----------ccccCC
Confidence 0 0010 1234456667777778999999999 334444
Q ss_pred HHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEe
Q 003691 322 RRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDI 369 (802)
Q Consensus 322 ~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i 369 (802)
......++.++..+....+..+|..|+++. +.. +.++.+.+
T Consensus 175 ~~t~~~V~~ll~~~~~~~g~tii~VTHd~~-----lA~--~~dr~i~l 215 (226)
T COG1136 175 SKTAKEVLELLRELNKERGKTIIMVTHDPE-----LAK--YADRVIEL 215 (226)
T ss_pred hHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-----HHH--hCCEEEEE
Confidence 444455666666665544555666777653 333 45555544
No 411
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.33 E-value=1.3e-06 Score=90.05 Aligned_cols=110 Identities=22% Similarity=0.377 Sum_probs=75.3
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEech---hhh-------------------------------
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGP---EIM------------------------------- 275 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~---~l~------------------------------- 275 (802)
++.|..++-+.|.||+|+|||||+|+||+..... .+.+++. +..
T Consensus 22 ~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFG 101 (345)
T COG1118 22 SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFG 101 (345)
T ss_pred eeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhc
Confidence 4456789999999999999999999999976432 2444433 110
Q ss_pred ------------------------------hhccc--hhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHH
Q 003691 276 ------------------------------SKLAG--ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERR 323 (802)
Q Consensus 276 ------------------------------~~~~g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 323 (802)
..|+. ...++-|..+..|..-.|.+|++|| +.+..+..
T Consensus 102 l~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDE----------Pf~ALDa~ 171 (345)
T COG1118 102 LKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE----------PFGALDAK 171 (345)
T ss_pred ccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecC----------CchhhhHH
Confidence 00111 1234445666777777899999999 55556666
Q ss_pred HHHHHHHhhhcccCCCcEEEEEecCCCC
Q 003691 324 IVSQLLTLMDGLKSRAHVIVMGATNRPN 351 (802)
Q Consensus 324 v~~~Ll~~ld~~~~~~~vivI~~tn~~~ 351 (802)
+...|..+|..+..+.++..+..|++.+
T Consensus 172 vr~~lr~wLr~~~~~~~~ttvfVTHD~e 199 (345)
T COG1118 172 VRKELRRWLRKLHDRLGVTTVFVTHDQE 199 (345)
T ss_pred HHHHHHHHHHHHHHhhCceEEEEeCCHH
Confidence 6777777777776777778888888764
No 412
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.33 E-value=9.7e-07 Score=87.01 Aligned_cols=109 Identities=16% Similarity=0.067 Sum_probs=66.3
Q ss_pred hCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhh--hhcc-chhHHHHHHHHHHHHhcCCeEEEecccc
Q 003691 233 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIM--SKLA-GESESNLRKAFEEAEKNAPSIIFIDELD 307 (802)
Q Consensus 233 l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~l~--~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid 307 (802)
+.+.+++.+.|.||+|+|||||+++|++.+... -+.+++..+. .... =...++-+..+..+....|.++++||..
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 356789999999999999999999999986432 2444442211 1110 1223455666777778899999999954
Q ss_pred cccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC
Q 003691 308 SIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 351 (802)
Q Consensus 308 ~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~ 351 (802)
.-+ +......+...+..+..+....++.+|++.+
T Consensus 100 s~L----------D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 133 (177)
T cd03222 100 AYL----------DIEQRLNAARAIRRLSEEGKKTALVVEHDLA 133 (177)
T ss_pred ccC----------CHHHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 332 2233334444444433332234555667654
No 413
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.33 E-value=1.8e-06 Score=88.96 Aligned_cols=165 Identities=21% Similarity=0.357 Sum_probs=92.0
Q ss_pred CceeeeecCCCCchhHHHHHHHHHhCCe-E--EEEeC-cch---------------------hh-hc------------c
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANECQAN-F--ISVKG-PEL---------------------LT-MW------------F 552 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~~~~-~--i~v~~-~~l---------------------~~-~~------------v 552 (802)
...++++||.|+|||+|++.+...+... + +.+.. ... .. .. .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 4569999999999999999999988432 1 11111 000 00 00 0
Q ss_pred CccHHHHHHHHHHHhhCC-CeEEEEcccchhh-hccCCCCCCCCCchHHHHHHHHHHhhccCCCCcE-EEEEecCCC---
Q 003691 553 GESEANVREIFDKARQSA-PCVLFFDELDSIA-TQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTV-FIIGATNRP--- 626 (802)
Q Consensus 553 g~se~~i~~lf~~a~~~~-p~il~iDEid~l~-~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v-~vi~aTn~~--- 626 (802)
......+..+++...... ..+|+|||++.+. ..+ .....+..|...++......++ +|+++++..
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLME 170 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHHHHHHHHHHhhccccCCceEEEECCchHHHH
Confidence 112345666666655543 3899999999997 211 2356777888888775444444 444444321
Q ss_pred C--CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccC-CC-CCccCHHHHHHHccCCCHHHHH
Q 003691 627 D--IIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS-PI-SPDVDLSALARYTHGFSGADIT 688 (802)
Q Consensus 627 ~--~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~-~~-~~~~~~~~la~~t~g~sg~di~ 688 (802)
+ .-.+.+. +|+.. +++++.+.++..++++..++.. .+ .++.+++.+...+.|. ++.|.
T Consensus 171 ~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~-P~~l~ 232 (234)
T PF01637_consen 171 EFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGN-PRYLQ 232 (234)
T ss_dssp HTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT--HHHHH
T ss_pred HhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCC-HHHHh
Confidence 1 1223344 48887 9999999999999999987766 11 2455677888877765 55554
No 414
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.32 E-value=4.2e-06 Score=81.47 Aligned_cols=133 Identities=24% Similarity=0.352 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCC-----------------------
Q 003691 208 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------------------- 264 (802)
Q Consensus 208 G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~----------------------- 264 (802)
|++..++.|...+.. -.-+..+||+||+|+||+++|+++|..+-.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 677788888777753 133567999999999999999999987632
Q ss_pred cEEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCc
Q 003691 265 FFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 340 (802)
Q Consensus 265 ~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 340 (802)
.++.++..... ..-.-+.++.+...... ...-|++|||+|.+. ....+.|+..|+.... .
T Consensus 69 d~~~~~~~~~~---~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~-----------~~a~NaLLK~LEepp~--~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKK---KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT-----------EEAQNALLKTLEEPPE--N 132 (162)
T ss_dssp TEEEEETTTSS---SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHSTTT--T
T ss_pred ceEEEeccccc---chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh-----------HHHHHHHHHHhcCCCC--C
Confidence 12223221110 01123556666665432 345699999999874 3456889999987543 6
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEeCC
Q 003691 341 VIVMGATNRPNSIDPALRRFGRFDREIDIGV 371 (802)
Q Consensus 341 vivI~~tn~~~~ld~al~r~~rf~~~i~i~~ 371 (802)
+.+|.+|+.++.+-+.+++ |. ..+.++.
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred EEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 7777788999999999998 65 3445543
No 415
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.32 E-value=4.9e-06 Score=94.88 Aligned_cols=48 Identities=27% Similarity=0.508 Sum_probs=37.5
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 201 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 201 ~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
..|+++.|....++.+.-. +..+.+++|+|||||||||+++.+++.+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~a---------------a~~g~~vlliG~pGsGKTtlar~l~~llp 236 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIA---------------AAGGHNLLLFGPPGSGKTMLASRLQGILP 236 (499)
T ss_pred CCHHHhcCcHHHHhhhhhh---------------ccCCCEEEEEecCCCCHHHHHHHHhcccC
Confidence 4678899988775554322 24567899999999999999999998764
No 416
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.32 E-value=5.2e-06 Score=81.15 Aligned_cols=119 Identities=26% Similarity=0.475 Sum_probs=71.0
Q ss_pred ccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh-----
Q 003691 206 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSK----- 277 (802)
Q Consensus 206 i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~~~----- 277 (802)
|.|.+..++++++.+.... ..+..|||+|++||||+++|++|-... ..+|+.|+|..+...
T Consensus 1 liG~s~~m~~~~~~~~~~a-----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA-----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT-----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh-----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 3566677777776665422 234789999999999999999998765 368999999765321
Q ss_pred ccchh-------HHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhccc-----C----CCcE
Q 003691 278 LAGES-------ESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S----RAHV 341 (802)
Q Consensus 278 ~~g~~-------~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~----~~~v 341 (802)
..|.. ...-...|+.|.. ..||||||+.|.+ .+...|+..++.-. . ...+
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPP-----------ELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-H-----------HHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hhccccccccccccccCCceeeccc---eEEeecchhhhHH-----------HHHHHHHHHHhhchhccccccccccccc
Confidence 11110 0001235555544 4999999998853 23455666665211 1 2367
Q ss_pred EEEEecCC
Q 003691 342 IVMGATNR 349 (802)
Q Consensus 342 ivI~~tn~ 349 (802)
-+|++|+.
T Consensus 136 RiI~st~~ 143 (168)
T PF00158_consen 136 RIIASTSK 143 (168)
T ss_dssp EEEEEESS
T ss_pred eEEeecCc
Confidence 88888875
No 417
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.32 E-value=1.1e-06 Score=93.98 Aligned_cols=109 Identities=18% Similarity=0.325 Sum_probs=71.4
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh---------------------------------
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS--------------------------------- 276 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~l~~--------------------------------- 276 (802)
++.+..++.+.|.||+||||||++|+||+..... -+.+++.++..
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~ 102 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKL 102 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhh
Confidence 4567889999999999999999999999976432 23444322210
Q ss_pred --------------------------hccc--hhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHH
Q 003691 277 --------------------------KLAG--ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQL 328 (802)
Q Consensus 277 --------------------------~~~g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 328 (802)
.+.. ...++-|..+..|.-..|.++++|| +.+..+.++...+
T Consensus 103 ~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE----------PlSnLDa~lR~~m 172 (338)
T COG3839 103 RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE----------PLSNLDAKLRVLM 172 (338)
T ss_pred CCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC----------chhHhhHHHHHHH
Confidence 0000 0123334455566667899999999 5555666666667
Q ss_pred HHhhhcccCCCcEEEEEecCCC
Q 003691 329 LTLMDGLKSRAHVIVMGATNRP 350 (802)
Q Consensus 329 l~~ld~~~~~~~vivI~~tn~~ 350 (802)
...+..+..+.+..+|-.|++.
T Consensus 173 r~ei~~lh~~l~~T~IYVTHDq 194 (338)
T COG3839 173 RSEIKKLHERLGTTTIYVTHDQ 194 (338)
T ss_pred HHHHHHHHHhcCCcEEEEcCCH
Confidence 6666666666666666677765
No 418
>PF13173 AAA_14: AAA domain
Probab=98.32 E-value=3.1e-06 Score=78.99 Aligned_cols=70 Identities=30% Similarity=0.397 Sum_probs=47.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhC--CcEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEecccccc
Q 003691 238 PKGILLYGPPGSGKTLIARAVANETG--AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSI 309 (802)
Q Consensus 238 ~~~vLL~GppGtGKTtLar~la~~l~--~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l 309 (802)
++.++|+||.||||||+++.+++.+. ..++.++..+.......... +...+.+.....+.++||||+..+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 35689999999999999999998876 66788887655432111111 222222222235679999999876
No 419
>PRK08181 transposase; Validated
Probab=98.31 E-value=1.9e-06 Score=90.48 Aligned_cols=72 Identities=25% Similarity=0.475 Sum_probs=49.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhccch-hHHHHHHHHHHHHhcCCeEEEeccccccc
Q 003691 237 PPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDELDSIA 310 (802)
Q Consensus 237 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~l~ 310 (802)
.+.+++|+||||||||+|+.+++.++ +..+++++..+++...... ........+... ..+.+|+|||++.+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 46789999999999999999999764 5667888877776543211 111222334433 346799999998764
No 420
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.30 E-value=3.4e-05 Score=78.46 Aligned_cols=179 Identities=19% Similarity=0.257 Sum_probs=113.3
Q ss_pred ccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh-CCcE---------
Q 003691 197 RLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-GAFF--------- 266 (802)
Q Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l-~~~~--------- 266 (802)
.+.+-+++.+.+.++....+..+... ..-.++++|||+|+||-|.+.+|-+++ |..+
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t 72 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT 72 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE
Confidence 34455666677777666666554421 112589999999999999999988775 3111
Q ss_pred -------------------EEEechhhhhhccchh-HHHHHHHHHHHHhc---------CCeEEEecccccccCCCCCCc
Q 003691 267 -------------------FLINGPEIMSKLAGES-ESNLRKAFEEAEKN---------APSIIFIDELDSIAPKREKTH 317 (802)
Q Consensus 267 -------------------v~v~~~~l~~~~~g~~-~~~l~~vf~~a~~~---------~p~il~iDEid~l~~~~~~~~ 317 (802)
++++.++ .|-. .-.+..++.+..+. .--+++|-|.|.|.
T Consensus 73 ~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT------- 140 (351)
T KOG2035|consen 73 FTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT------- 140 (351)
T ss_pred EecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh-------
Confidence 1122111 1211 12234444443322 22588899988774
Q ss_pred hhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccCccc-cchhh
Q 003691 318 GEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLA-EDVDL 396 (802)
Q Consensus 318 ~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l 396 (802)
+.....|...|+.+....+ +|..+|....+-+++++ |. ..+.++.|+.++-..++...+++-.+. +..-+
T Consensus 141 ----~dAQ~aLRRTMEkYs~~~R--lIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l 211 (351)
T KOG2035|consen 141 ----RDAQHALRRTMEKYSSNCR--LILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELL 211 (351)
T ss_pred ----HHHHHHHHHHHHHHhcCce--EEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHH
Confidence 3455677788887766444 44568888889899988 54 457899999999999998776654432 23456
Q ss_pred HHHHhhcCCCchH
Q 003691 397 ERVAKDTHGYVGS 409 (802)
Q Consensus 397 ~~la~~t~g~~~~ 409 (802)
..+++.+.|....
T Consensus 212 ~rIa~kS~~nLRr 224 (351)
T KOG2035|consen 212 KRIAEKSNRNLRR 224 (351)
T ss_pred HHHHHHhcccHHH
Confidence 7788777765443
No 421
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.29 E-value=1.1e-07 Score=97.61 Aligned_cols=97 Identities=22% Similarity=0.274 Sum_probs=67.1
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh-hccchhHHHHHHHHHHHHhcCCeEEEeccccc
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS-KLAGESESNLRKAFEEAEKNAPSIIFIDELDS 308 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~l~~-~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~ 308 (802)
++.+.+++.++|+|+||||||||++.+++.+... .+.+++..+.. ....+..+++..+||.+..+.-.-.+.||+.+
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evaf 103 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAF 103 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhh
Confidence 4567889999999999999999999999988654 35666655431 22334445566677777766655666777777
Q ss_pred ccCCCCCCchhHHHHHHHHH
Q 003691 309 IAPKREKTHGEVERRIVSQL 328 (802)
Q Consensus 309 l~~~~~~~~~~~~~~v~~~L 328 (802)
.+.+.+.+..++..++...|
T Consensus 104 g~~n~g~~~~e~~~rv~~~l 123 (235)
T COG1122 104 GLENLGLPREEIEERVAEAL 123 (235)
T ss_pred chhhcCCCHHHHHHHHHHHH
Confidence 77776666555555555443
No 422
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.29 E-value=8.8e-06 Score=88.06 Aligned_cols=159 Identities=24% Similarity=0.389 Sum_probs=100.1
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEEech-------
Q 003691 200 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGP------- 272 (802)
Q Consensus 200 ~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v~~~------- 272 (802)
...|.-+.|.+..+..|--.. -. ..-.++||-|+.|+||||++|+|+..++...+...|+
T Consensus 13 ~~pf~aivGqd~lk~aL~l~a----v~---------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNA----VD---------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhh----cc---------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 456777899887766552111 11 1235799999999999999999999987654433331
Q ss_pred ------h-------------------hhhhccchhHHH-HHHH-HHHHHh-----c--------CCeEEEecccccccCC
Q 003691 273 ------E-------------------IMSKLAGESESN-LRKA-FEEAEK-----N--------APSIIFIDELDSIAPK 312 (802)
Q Consensus 273 ------~-------------------l~~~~~g~~~~~-l~~v-f~~a~~-----~--------~p~il~iDEid~l~~~ 312 (802)
. +...-.+.++.+ ++.+ .+.+.. . .-.|+++||+..|.
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--
Confidence 0 111112333332 1111 111111 1 22599999988763
Q ss_pred CCCCchhHHHHHHHHHHHhhhc-----------ccCCCcEEEEEecCCCC-CCCHHhhccCCcceEEEeCCC-CHHHHHH
Q 003691 313 REKTHGEVERRIVSQLLTLMDG-----------LKSRAHVIVMGATNRPN-SIDPALRRFGRFDREIDIGVP-DEVGRLE 379 (802)
Q Consensus 313 ~~~~~~~~~~~v~~~Ll~~ld~-----------~~~~~~vivI~~tn~~~-~ld~al~r~~rf~~~i~i~~P-~~~~R~~ 379 (802)
..++..|+..+.. +.-..++++|||+|+.+ .|-+.|+- ||...+.+..| +.++|.+
T Consensus 158 ---------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 158 ---------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred ---------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 4567777776653 12235799999999764 66677766 89888877665 5788888
Q ss_pred HHHHH
Q 003691 380 ILRIH 384 (802)
Q Consensus 380 Il~~~ 384 (802)
|....
T Consensus 227 Ii~r~ 231 (423)
T COG1239 227 IIRRR 231 (423)
T ss_pred HHHHH
Confidence 88744
No 423
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.29 E-value=1.9e-06 Score=81.05 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=29.4
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGA 264 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~ 264 (802)
+|.+.+++.++|+||+|||||||.|++|.....
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhccCC
Confidence 556789999999999999999999999987653
No 424
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.7e-07 Score=102.34 Aligned_cols=48 Identities=31% Similarity=0.587 Sum_probs=39.8
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHh
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 535 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~ 535 (802)
...|.||.|++..|+.|..... -.+++||+||||||||+||+-+.+.+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 3478899999999998875533 24679999999999999999888765
No 425
>PRK06526 transposase; Provisional
Probab=98.28 E-value=1.1e-06 Score=91.86 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=45.8
Q ss_pred CceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhhccCc-cHHHHHHHHHHHhhCCCeEEEEcccchhh
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSIA 583 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~vg~-se~~i~~lf~~a~~~~p~il~iDEid~l~ 583 (802)
+.+++|+||||||||+||.+++.++ +.....+..++++...... ....+...+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 4579999999999999999999875 4455555666655432110 111222233332 235799999998863
No 426
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.28 E-value=1.5e-06 Score=93.27 Aligned_cols=101 Identities=27% Similarity=0.358 Sum_probs=62.9
Q ss_pred CCceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhhccCc-cHHHHHHHHHHHhhCCCeEEEEcccchhhhc
Q 003691 510 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSIATQ 585 (802)
Q Consensus 510 ~~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~vg~-se~~i~~lf~~a~~~~p~il~iDEid~l~~~ 585 (802)
..+|++|+||+|||||+|+.++|.++ +.+...+..++++...... ....+...++.... ..+|+|||+..-..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~--~dlLiIDDiG~e~~- 231 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKE--APVLMLDDIGAEQM- 231 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcC--CCEEEEecCCCccc-
Confidence 35789999999999999999999998 5667777777776543211 01123344444433 35999999976321
Q ss_pred cCCCCCCCCCchH-HHHHHHHHH-hhccCCCCcEEEEEecCCC
Q 003691 586 RGSSTGDAGGAAD-RVLNQLLTE-MDGMNAKKTVFIIGATNRP 626 (802)
Q Consensus 586 r~~~~~~~~~~~~-~vl~~lL~~-ld~~~~~~~v~vi~aTn~~ 626 (802)
+.+.. .++..++.. |. .+.-.|.|||.+
T Consensus 232 --------s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 232 --------SSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred --------cHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 11222 344544432 22 123577788865
No 427
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.27 E-value=3.8e-06 Score=80.93 Aligned_cols=109 Identities=22% Similarity=0.412 Sum_probs=71.2
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh---------------------------------
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS--------------------------------- 276 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~l~~--------------------------------- 276 (802)
++.+.+++.+.|+||+|+|||||+|.|.++.... -+.+++.++..
T Consensus 22 s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA 101 (223)
T COG2884 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA 101 (223)
T ss_pred eEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhh
Confidence 4567899999999999999999999999876432 23333322200
Q ss_pred ---------------------hccc------------hhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHH
Q 003691 277 ---------------------KLAG------------ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERR 323 (802)
Q Consensus 277 ---------------------~~~g------------~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 323 (802)
.++| ...++-|..++.|.-+.|.+|+-|| +.+..+..
T Consensus 102 ~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADE----------PTGNLDp~ 171 (223)
T COG2884 102 LPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADE----------PTGNLDPD 171 (223)
T ss_pred hhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecC----------CCCCCChH
Confidence 0000 0223445666667778899999998 45555566
Q ss_pred HHHHHHHhhhcccCCCcEEEEEecCCCC
Q 003691 324 IVSQLLTLMDGLKSRAHVIVMGATNRPN 351 (802)
Q Consensus 324 v~~~Ll~~ld~~~~~~~vivI~~tn~~~ 351 (802)
....++.++..+...+..++ .+|++.+
T Consensus 172 ~s~~im~lfeeinr~GtTVl-~ATHd~~ 198 (223)
T COG2884 172 LSWEIMRLFEEINRLGTTVL-MATHDLE 198 (223)
T ss_pred HHHHHHHHHHHHhhcCcEEE-EEeccHH
Confidence 66777778877766554444 4566543
No 428
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.27 E-value=7.5e-06 Score=84.41 Aligned_cols=181 Identities=30% Similarity=0.445 Sum_probs=94.7
Q ss_pred cChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc---EEEEec---h------hh
Q 003691 207 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---FFLING---P------EI 274 (802)
Q Consensus 207 ~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---~v~v~~---~------~l 274 (802)
.|.++++++|.+++.. .+...++|+||.|+|||+|++.+...+... .+.+.. . .+
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 4677777888776642 245789999999999999999999987321 111111 0 00
Q ss_pred -------------hh-hc------------cchhHHHHHHHHHHHHhcC-CeEEEeccccccc-CCCCCCchhHHHHHHH
Q 003691 275 -------------MS-KL------------AGESESNLRKAFEEAEKNA-PSIIFIDELDSIA-PKREKTHGEVERRIVS 326 (802)
Q Consensus 275 -------------~~-~~------------~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~-~~~~~~~~~~~~~v~~ 326 (802)
.. .. .......+..+++...... ..+++|||++.+. .... ...+..
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~------~~~~~~ 142 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE------DKDFLK 142 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT------THHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc------hHHHHH
Confidence 00 00 0122345666666665543 4899999999997 2111 134556
Q ss_pred HHHHhhhcccCCCcEEEEEecCCCC---C-CCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhccC-cc-ccchhhHHHH
Q 003691 327 QLLTLMDGLKSRAHVIVMGATNRPN---S-IDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNM-KL-AEDVDLERVA 400 (802)
Q Consensus 327 ~Ll~~ld~~~~~~~vivI~~tn~~~---~-ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~~~~~~-~l-~~~~~l~~la 400 (802)
.|.+.++......++.+|.+..... . .+..-.-.+|+.. +.+++.+.++..+++....+.. .+ .++.+++.+.
T Consensus 143 ~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (234)
T PF01637_consen 143 SLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIY 221 (234)
T ss_dssp HHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHH
T ss_pred HHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 6677776644444444443332211 0 1111112356666 8999999999999998776554 11 2455677777
Q ss_pred hhcCCCc
Q 003691 401 KDTHGYV 407 (802)
Q Consensus 401 ~~t~g~~ 407 (802)
..+.|+-
T Consensus 222 ~~~gG~P 228 (234)
T PF01637_consen 222 SLTGGNP 228 (234)
T ss_dssp HHHTT-H
T ss_pred HHhCCCH
Confidence 7777753
No 429
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.27 E-value=2.5e-06 Score=88.26 Aligned_cols=100 Identities=21% Similarity=0.293 Sum_probs=64.9
Q ss_pred ceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhhccC---ccHHHHHHHHHHHhhCCCeEEEEcccchhhhc
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG---ESEANVREIFDKARQSAPCVLFFDELDSIATQ 585 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~vg---~se~~i~~lf~~a~~~~p~il~iDEid~l~~~ 585 (802)
.+++|+|+||||||+|+.++|..+ +..++.+..+++.....+ ........+++... ..++|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 479999999999999999999987 567788888888754322 11122334555543 356999999987531
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCC
Q 003691 586 RGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 626 (802)
Q Consensus 586 r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~ 626 (802)
+.....++.+++..-- ..+.-+|.|||..
T Consensus 177 --------s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 177 --------SRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred --------CHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 2233445555554321 2223567788865
No 430
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.26 E-value=7e-06 Score=88.79 Aligned_cols=161 Identities=24% Similarity=0.369 Sum_probs=105.2
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCeEEEEeC--------
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG-------- 544 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~~i~v~~-------- 544 (802)
...+.-+.|++..|..|.-.... ..-.|+|+.|+.|+||||++++||..+..--+...+
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 34566788888888776433221 223479999999999999999999998422111111
Q ss_pred c------------------------chhhhccCccHH-H-----HHHHHHH----------HhhCCCeEEEEcccchhhh
Q 003691 545 P------------------------ELLTMWFGESEA-N-----VREIFDK----------ARQSAPCVLFFDELDSIAT 584 (802)
Q Consensus 545 ~------------------------~l~~~~vg~se~-~-----i~~lf~~----------a~~~~p~il~iDEid~l~~ 584 (802)
+ .+...-.|.++. - +.++.+. |+. ...|+++||+..|.
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A-nRGIlYvDEvnlL~- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA-NRGILYVDEVNLLD- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc-cCCEEEEecccccc-
Confidence 0 011112233333 1 1111111 111 22599999998873
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHhhcc-----------CCCCcEEEEEecCCCC-CCCccccCCCCcceEEEecCC-CHH
Q 003691 585 QRGSSTGDAGGAADRVLNQLLTEMDGM-----------NAKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLP-DEA 651 (802)
Q Consensus 585 ~r~~~~~~~~~~~~~vl~~lL~~ld~~-----------~~~~~v~vi~aTn~~~-~ld~allr~gRf~~~i~~~~p-~~~ 651 (802)
+.+++.||..+... ...-++++|+|+|.-+ .|-|-|+. ||...|.+..| +.+
T Consensus 158 -------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~ 222 (423)
T COG1239 158 -------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLE 222 (423)
T ss_pred -------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHH
Confidence 67888898887652 1234799999999863 58888888 99999988755 679
Q ss_pred HHHHHHHHHhcc
Q 003691 652 SRLQIFKACLRK 663 (802)
Q Consensus 652 ~r~~Il~~~l~~ 663 (802)
+|.+|.+..+..
T Consensus 223 ~rv~Ii~r~~~f 234 (423)
T COG1239 223 ERVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHHh
Confidence 999999887754
No 431
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.26 E-value=9.4e-07 Score=87.34 Aligned_cols=70 Identities=31% Similarity=0.550 Sum_probs=47.0
Q ss_pred CCceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhhccCc-cHHHHHHHHHHHhhCCCeEEEEcccch
Q 003691 510 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDS 581 (802)
Q Consensus 510 ~~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~vg~-se~~i~~lf~~a~~~~p~il~iDEid~ 581 (802)
...+++|+||||||||+||.+++.++ +.....++.++++...-.. ........++..... .+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~--dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRV--DLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTS--SCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccc--cEecccccce
Confidence 35689999999999999999999875 6677888888887643211 111233444444433 5999999865
No 432
>PRK12377 putative replication protein; Provisional
Probab=98.26 E-value=5.2e-06 Score=86.14 Aligned_cols=70 Identities=24% Similarity=0.443 Sum_probs=47.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhccchhH--HHHHHHHHHHHhcCCeEEEecccccc
Q 003691 238 PKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESE--SNLRKAFEEAEKNAPSIIFIDELDSI 309 (802)
Q Consensus 238 ~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~~~--~~l~~vf~~a~~~~p~il~iDEid~l 309 (802)
..+++|+||||||||+||.+++..+ +..++.++.++++........ .....+++.. ....+|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 4689999999999999999999887 455777777776653221110 0112233332 45679999998754
No 433
>PRK06526 transposase; Provisional
Probab=98.25 E-value=2.1e-06 Score=89.63 Aligned_cols=73 Identities=21% Similarity=0.435 Sum_probs=47.1
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhccch-hHHHHHHHHHHHHhcCCeEEEeccccccc
Q 003691 236 KPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDELDSIA 310 (802)
Q Consensus 236 ~~~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~l~ 310 (802)
..+.+++|+||||||||+|+.+|+.++ +..++.++..+++...... ....+...+... ..+.+|+|||++.+.
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 346789999999999999999998775 4555566666554432110 011122223222 346799999998764
No 434
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.24 E-value=1.6e-06 Score=93.73 Aligned_cols=111 Identities=23% Similarity=0.358 Sum_probs=67.0
Q ss_pred ceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhhccC---ccHHHHHHHHHHHhhCCCeEEEEcccchhhhc
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG---ESEANVREIFDKARQSAPCVLFFDELDSIATQ 585 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~vg---~se~~i~~lf~~a~~~~p~il~iDEid~l~~~ 585 (802)
.+++|+||+|+|||+||.++|.++ +..++.+..++++..... .........++.... ..+|+|||+.....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~--~DLLIIDDlG~e~~- 260 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN--CDLLIIDDLGTEKI- 260 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc--CCEEEEeccCCCCC-
Confidence 679999999999999999999987 567888888888664321 111111222344333 36999999977521
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCC-CC----CCccccCCCCc
Q 003691 586 RGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP-DI----IDPALLRPGRL 639 (802)
Q Consensus 586 r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~-~~----ld~allr~gRf 639 (802)
.....+.|...++.-...++ -+|.|||.+ +. +++.+.+ |+
T Consensus 261 -----------t~~~~~~Lf~iin~R~~~~k-~tIiTSNl~~~el~~~~~eri~S--RL 305 (329)
T PRK06835 261 -----------TEFSKSELFNLINKRLLRQK-KMIISTNLSLEELLKTYSERISS--RL 305 (329)
T ss_pred -----------CHHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHHhHHHHH--HH
Confidence 12233445555544322222 356677754 22 4555554 55
No 435
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.24 E-value=1.7e-06 Score=86.02 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=66.7
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh---------------------------hccc--
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS---------------------------KLAG-- 280 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~l~~---------------------------~~~g-- 280 (802)
++.+.+++.++|.||+|+|||||+++|++..... -+.+++.++.. ....
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 4456889999999999999999999999986432 24444432210 0000
Q ss_pred hhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC
Q 003691 281 ESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 353 (802)
Q Consensus 281 ~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~l 353 (802)
...++-+..+..+....|.++++||...-+ +......+.+.+..+.......+|.++++++.+
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~L----------D~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHL----------DIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 012334555666677789999999954332 222334444455444332123455567765543
No 436
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=2.2e-05 Score=84.52 Aligned_cols=127 Identities=17% Similarity=0.283 Sum_probs=88.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEEechhhhhhccchhHHHHHHHHHHH
Q 003691 238 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFLINGPEIMSKLAGESESNLRKAFEEA 293 (802)
Q Consensus 238 ~~~vLL~GppGtGKTtLar~la~~l~~~------------------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a 293 (802)
+..+||+||+|+||+++|+.+|+.+-.. ++.+...+ ++ .-.-..+|.+.+.+
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~--~I~id~iR~l~~~~ 99 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NK--DIGVDQVREINEKV 99 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CC--CCCHHHHHHHHHHH
Confidence 5679999999999999999999876321 11121100 00 11344566665554
Q ss_pred H----hcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEe
Q 003691 294 E----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDI 369 (802)
Q Consensus 294 ~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i 369 (802)
. ...--|++||++|.+. ....+.|++.+++- ...+++|.+|+.++.+.|.+++ |. ..+.+
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~-----------~~AaNaLLKtLEEP--p~~~~fiL~t~~~~~llpTI~S--RC-~~~~~ 163 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLT-----------EAAANALLKTLEEP--RPNTYFLLQADLSAALLPTIYS--RC-QTWLI 163 (325)
T ss_pred hhccccCCceEEEEechhhhC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChHhCchHHHh--hc-eEEeC
Confidence 3 2334699999999874 33567899999874 3467777788999999999988 65 56789
Q ss_pred CCCCHHHHHHHHHHH
Q 003691 370 GVPDEVGRLEILRIH 384 (802)
Q Consensus 370 ~~P~~~~R~~Il~~~ 384 (802)
.+|+.++-.+.|...
T Consensus 164 ~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 164 HPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999988887777643
No 437
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=6.8e-06 Score=86.55 Aligned_cols=118 Identities=15% Similarity=0.162 Sum_probs=82.3
Q ss_pred CCCceeeeecCCCCchhHHHHHHHHHhCC----------------eEEEEeCcchhhhccCccHHHHHHHHHH----Hhh
Q 003691 509 SPSKGVLFYGPPGCGKTLLAKAIANECQA----------------NFISVKGPELLTMWFGESEANVREIFDK----ARQ 568 (802)
Q Consensus 509 ~~~~gill~GppGtGKT~lakala~~~~~----------------~~i~v~~~~l~~~~vg~se~~i~~lf~~----a~~ 568 (802)
+.+...||+||.|+||+++|.++|..+-+ ++..+.. +-.+..+ +-..++.+-+. +..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p-~~~~~~I--~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSP-QGKGRLH--SIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEec-CCCCCcC--cHHHHHHHHHHHhhCccC
Confidence 45667999999999999999999987632 2333321 1000001 23344544444 334
Q ss_pred CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEecCC
Q 003691 569 SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 648 (802)
Q Consensus 569 ~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~~~p 648 (802)
....|++||++|.+- ....|.||+.|+. +..++++|..|+.++.|-|.+++ |+. .+.|+++
T Consensus 94 ~~~kv~ii~~ad~mt--------------~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMT--------------LDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred CCceEEEEechhhcC--------------HHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 455799999999973 4467899999994 56678888888889999999887 886 6777765
No 438
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.23 E-value=2.2e-06 Score=81.75 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=51.9
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhhhcc-chhHHHHHHHHHHHHhcCCeEEEeccccc
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMSKLA-GESESNLRKAFEEAEKNAPSIIFIDELDS 308 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~l~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~ 308 (802)
++.+.+++.+.|.||+|+|||||++++++..... -+.+++........ -...+.-+..+..+....|.++++||...
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 3456889999999999999999999999987532 23333321111000 11234455567777788999999999554
No 439
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=9.4e-06 Score=88.05 Aligned_cols=132 Identities=15% Similarity=0.213 Sum_probs=90.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhCCcE-------------------------EEEechhhh---------------
Q 003691 236 KPPKGILLYGPPGSGKTLIARAVANETGAFF-------------------------FLINGPEIM--------------- 275 (802)
Q Consensus 236 ~~~~~vLL~GppGtGKTtLar~la~~l~~~~-------------------------v~v~~~~l~--------------- 275 (802)
.-+..+||+||+|+||+++|+.+|+.+.... ..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 4467899999999999999999998874321 111100000
Q ss_pred ---hh----c-cchhHHHHHHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEE
Q 003691 276 ---SK----L-AGESESNLRKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIV 343 (802)
Q Consensus 276 ---~~----~-~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viv 343 (802)
++ . ..-.-..+|.+.+.... ..-.|++||++|.+. ....+.|++.+++. ..++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEP--p~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN-----------VAAANALLKTLEEP--PPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC-----------HHHHHHHHHHhcCC--CcCcEE
Confidence 00 0 00122456666555432 234599999999874 23557899999863 446788
Q ss_pred EEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHH
Q 003691 344 MGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRI 383 (802)
Q Consensus 344 I~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il~~ 383 (802)
|.+|++++.+.|.+++ |+ ..+.+++|+.++..+.|..
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHH
Confidence 8889999999999998 76 6789999999888888864
No 440
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.22 E-value=1.7e-06 Score=87.00 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=32.9
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechh
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPE 273 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~ 273 (802)
+|.+..++.+.|.||+||||||+++.+.+.+... -+.+++.+
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~ 64 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGED 64 (309)
T ss_pred eEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCee
Confidence 4567889999999999999999999998876433 25555543
No 441
>PRK12377 putative replication protein; Provisional
Probab=98.21 E-value=3.3e-06 Score=87.64 Aligned_cols=70 Identities=24% Similarity=0.373 Sum_probs=47.9
Q ss_pred CceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhhccCc--cHHHHHHHHHHHhhCCCeEEEEcccchh
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE--SEANVREIFDKARQSAPCVLFFDELDSI 582 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~vg~--se~~i~~lf~~a~~~~p~il~iDEid~l 582 (802)
..+++|+||||||||+||.++|..+ +..++.+..++++...-.. .......+++... ...+|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~--~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELC--KVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 3579999999999999999999987 4567777777876533110 0011223444433 3469999999764
No 442
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.21 E-value=3.1e-06 Score=83.33 Aligned_cols=110 Identities=24% Similarity=0.355 Sum_probs=67.5
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh-------h---cc---------------chhHH
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS-------K---LA---------------GESES 284 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~l~~-------~---~~---------------g~~~~ 284 (802)
++.+.+++.+.|.||+|+|||||++++++.+... -+.+++..+.. . +. =...+
T Consensus 22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHH
Confidence 3567889999999999999999999999986432 24444422210 0 00 00123
Q ss_pred HHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC
Q 003691 285 NLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 353 (802)
Q Consensus 285 ~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~l 353 (802)
+-+..+..+....|.++++||-...+ +......+.+.+..+.. . ..+|.+|++++.+
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gL----------D~~~~~~l~~~l~~~~~-~-~tii~~sh~~~~~ 158 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSAL----------DPETEALILEALRALAK-G-KTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCC----------CHHHHHHHHHHHHHhcC-C-CEEEEEecCHHHH
Confidence 34455667777889999999954332 22333445555554433 2 4555667776544
No 443
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.20 E-value=9.5e-06 Score=84.83 Aligned_cols=72 Identities=29% Similarity=0.540 Sum_probs=49.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhccchhHH-HHHHHHHHHHhcCCeEEEecccccc
Q 003691 237 PPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGESES-NLRKAFEEAEKNAPSIIFIDELDSI 309 (802)
Q Consensus 237 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~~~~-~l~~vf~~a~~~~p~il~iDEid~l 309 (802)
.+.+++|+||||+|||+||-+++.++ |..++.+..++++......... ....-+... -....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 57899999999999999999999886 5677888888887543322111 111112221 123469999998765
No 444
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.20 E-value=6.3e-06 Score=95.17 Aligned_cols=132 Identities=18% Similarity=0.211 Sum_probs=80.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhCCcEEEE----echhhhhhc-----cchhHHHHHHHHHHHHhcCCeEEEecccc
Q 003691 237 PPKGILLYGPPGSGKTLIARAVANETGAFFFLI----NGPEIMSKL-----AGESESNLRKAFEEAEKNAPSIIFIDELD 307 (802)
Q Consensus 237 ~~~~vLL~GppGtGKTtLar~la~~l~~~~v~v----~~~~l~~~~-----~g~~~~~l~~vf~~a~~~~p~il~iDEid 307 (802)
...+|||+|+||||||++|+++++..+...+.. ++..+.... .|+..-..+. +. .....++++||++
T Consensus 235 ~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~-l~---~A~~Gil~iDEi~ 310 (509)
T smart00350 235 GDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGA-LV---LADNGVCCIDEFD 310 (509)
T ss_pred ccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCcc-EE---ecCCCEEEEechh
Confidence 345899999999999999999999876442221 111111100 0110000000 11 1234599999999
Q ss_pred cccCCCCCCchhHHHHHHHHHHHhhhccc-----------CCCcEEEEEecCCCC-------------CCCHHhhccCCc
Q 003691 308 SIAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVMGATNRPN-------------SIDPALRRFGRF 363 (802)
Q Consensus 308 ~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~vivI~~tn~~~-------------~ld~al~r~~rf 363 (802)
.+.+. ....|+..|+.-. -...+.||+++|+.+ .+++++.+ ||
T Consensus 311 ~l~~~-----------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RF 377 (509)
T smart00350 311 KMDDS-----------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RF 377 (509)
T ss_pred hCCHH-----------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ce
Confidence 87432 3455666664321 124678899999763 57888887 99
Q ss_pred ceEE-EeCCCCHHHHHHHHHHHh
Q 003691 364 DREI-DIGVPDEVGRLEILRIHT 385 (802)
Q Consensus 364 ~~~i-~i~~P~~~~R~~Il~~~~ 385 (802)
+..+ ....|+.+...+|.+..+
T Consensus 378 dLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 378 DLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred eeEEEecCCCChHHHHHHHHHHH
Confidence 8754 457888888888887544
No 445
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.20 E-value=3.5e-06 Score=93.58 Aligned_cols=155 Identities=28% Similarity=0.408 Sum_probs=97.6
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhh--
Q 003691 200 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEI-- 274 (802)
Q Consensus 200 ~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l-- 274 (802)
..+|++|.|-..++.++.+.... .......|||+|.+||||..+|+++=+.. +.+|+.+||..+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 46899999999988888777653 22456789999999999999999997665 468999999544
Q ss_pred -------hhhccchhHHH----HHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcc--------
Q 003691 275 -------MSKLAGESESN----LRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGL-------- 335 (802)
Q Consensus 275 -------~~~~~g~~~~~----l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-------- 335 (802)
++...|.+-.. -.-.|+.|.. ..||+|||..+.. .+...|+..+..-
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgempl-----------~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMPL-----------PLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCCH-----------HHHHHHHHHHhhceEEecCCC
Confidence 22222211111 1224444443 3899999987642 2334555554321
Q ss_pred c-CCCcEEEEEecCCCCCCCHHhhccCCcc-------eEEEeCCCCHHHHHHHHH
Q 003691 336 K-SRAHVIVMGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLEILR 382 (802)
Q Consensus 336 ~-~~~~vivI~~tn~~~~ld~al~r~~rf~-------~~i~i~~P~~~~R~~Il~ 382 (802)
. ....|-||+|||+. +-.++.. |+|- ..+.+..|...+|.+-+.
T Consensus 376 ~~~~vDVRIIAATN~n--L~~~i~~-G~FReDLYYRLNV~~i~iPPLReR~eDI~ 427 (560)
T COG3829 376 KPIPVDVRIIAATNRN--LEKMIAE-GTFREDLYYRLNVIPITIPPLRERKEDIP 427 (560)
T ss_pred CceeeEEEEEeccCcC--HHHHHhc-CcchhhheeeeceeeecCCCcccCcchHH
Confidence 1 12468899999964 2222221 2321 345677888877765443
No 446
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.19 E-value=8.6e-06 Score=84.29 Aligned_cols=69 Identities=26% Similarity=0.477 Sum_probs=49.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhccchh---HHHHHHHHHHHHhcCCeEEEecccccc
Q 003691 239 KGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGES---ESNLRKAFEEAEKNAPSIIFIDELDSI 309 (802)
Q Consensus 239 ~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~~---~~~l~~vf~~a~~~~p~il~iDEid~l 309 (802)
.+++|+|+||||||+|+.+++..+ +..++.++..++........ ......+++.. ...++|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCC
Confidence 589999999999999999999987 56777888777765332211 11223344443 25679999999875
No 447
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.19 E-value=9.2e-06 Score=75.88 Aligned_cols=98 Identities=24% Similarity=0.392 Sum_probs=60.4
Q ss_pred ceeeeecCCCCchhHHHHHHHHHh--------CCeEEEEeCcchhhh--------------ccC-cc-HHHHHHHHHHHh
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANEC--------QANFISVKGPELLTM--------------WFG-ES-EANVREIFDKAR 567 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~--------~~~~i~v~~~~l~~~--------------~vg-~s-e~~i~~lf~~a~ 567 (802)
+.++++||+|+|||++++.++..+ ..+++.++.+...+. ..+ .+ ......+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 458999999999999999999987 677787776544310 001 12 223334444455
Q ss_pred hCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecC
Q 003691 568 QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATN 624 (802)
Q Consensus 568 ~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn 624 (802)
.....+|+|||+|.+. ...+++.|...++ ...-.++++++.+
T Consensus 85 ~~~~~~lviDe~~~l~-------------~~~~l~~l~~l~~--~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-------------SDEFLEFLRSLLN--ESNIKVVLVGTPE 126 (131)
T ss_dssp HCTEEEEEEETTHHHH-------------THHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred hcCCeEEEEeChHhcC-------------CHHHHHHHHHHHh--CCCCeEEEEEChh
Confidence 5554699999999974 1456666655555 3333555555553
No 448
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.18 E-value=1.1e-05 Score=83.79 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=100.4
Q ss_pred ccccccccccchhhhhhhhhhcCcCCChhhhhhccCCCCceeeeecCCCCchhHHHHHHHHHhCCe------EEEEeCcc
Q 003691 473 NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------FISVKGPE 546 (802)
Q Consensus 473 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gill~GppGtGKT~lakala~~~~~~------~i~v~~~~ 546 (802)
.-..+++.+.+++...+.+.... ..-.++|+|||||+|||+..-+.|..+-.+ ...++.++
T Consensus 37 P~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd 103 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASD 103 (360)
T ss_pred CchhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccC
Confidence 34556677777776666655322 222379999999999999999999887543 11222222
Q ss_pred hhhhccCccHHHHHHHHHHHhh-------CCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEE
Q 003691 547 LLTMWFGESEANVREIFDKARQ-------SAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFI 619 (802)
Q Consensus 547 l~~~~vg~se~~i~~lf~~a~~-------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~v 619 (802)
-.+ . ...+.-...|..+++ ..+..+++||+|++. ....++|=+..+.+.. ++-+
T Consensus 104 ~rg--i-d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT--------------~~AQnALRRviek~t~--n~rF 164 (360)
T KOG0990|consen 104 DRG--I-DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT--------------RDAQNALRRVIEKYTA--NTRF 164 (360)
T ss_pred ccC--C-cchHHHHHHHHhhccceeccccCceeEEEecchhHhh--------------HHHHHHHHHHHHHhcc--ceEE
Confidence 211 1 122334456666653 377899999999974 3344555555555443 3445
Q ss_pred EEecCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccC
Q 003691 620 IGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKS 664 (802)
Q Consensus 620 i~aTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~l~~~ 664 (802)
+...|.|..+-|++++ ||. .+.|.+.+...-..++..+++.-
T Consensus 165 ~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 165 ATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESE 206 (360)
T ss_pred EEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcc
Confidence 5678999999999998 887 56666767666666666666443
No 449
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.18 E-value=4.6e-05 Score=77.50 Aligned_cols=155 Identities=17% Similarity=0.300 Sum_probs=101.8
Q ss_pred ceeeeecCCCCchhHHHHHHHHHh-CCe--EEEEeCcc-------------hhhhc--------cCccHH-HHHHHHHHH
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANEC-QAN--FISVKGPE-------------LLTMW--------FGESEA-NVREIFDKA 566 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~-~~~--~i~v~~~~-------------l~~~~--------vg~se~-~i~~lf~~a 566 (802)
.++++|||+|+||-|.+.++-+++ |.. -+.+.... +.+.| .|...+ -|.++.+..
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 469999999999999999998886 211 11111111 11111 233322 355555554
Q ss_pred hhC---------CCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCC
Q 003691 567 RQS---------APCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPG 637 (802)
Q Consensus 567 ~~~---------~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~g 637 (802)
.+. ...+++|-|+|.+- ......|=+.|+.+.+ .+-+|..+|....|-+++.+
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT--------------~dAQ~aLRRTMEkYs~--~~RlIl~cns~SriIepIrS-- 176 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELT--------------RDAQHALRRTMEKYSS--NCRLILVCNSTSRIIEPIRS-- 176 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhh--------------HHHHHHHHHHHHHHhc--CceEEEEecCcccchhHHhh--
Confidence 332 34799999999983 3345566677776643 45677778888888888887
Q ss_pred CcceEEEecCCCHHHHHHHHHHHhccCCCCCccC-HHHHHHHccCCCHHHHHH
Q 003691 638 RLDQLIYIPLPDEASRLQIFKACLRKSPISPDVD-LSALARYTHGFSGADITE 689 (802)
Q Consensus 638 Rf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-~~~la~~t~g~sg~di~~ 689 (802)
|+- .|.+|.|+.++...++...+++-.+.-..+ +..+|+.+ +++++.
T Consensus 177 RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS----~~nLRr 224 (351)
T KOG2035|consen 177 RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS----NRNLRR 224 (351)
T ss_pred hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh----cccHHH
Confidence 774 889999999999999999997766553322 34555544 456664
No 450
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.17 E-value=4.7e-06 Score=87.15 Aligned_cols=68 Identities=29% Similarity=0.472 Sum_probs=48.8
Q ss_pred CCceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhhcc-----CccHHHHHHHHHHHhhCCCeEEEEcccch
Q 003691 510 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWF-----GESEANVREIFDKARQSAPCVLFFDELDS 581 (802)
Q Consensus 510 ~~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~~v-----g~se~~i~~lf~~a~~~~p~il~iDEid~ 581 (802)
...+++|+||||+|||+||-|++.++ +...+.+..++++...- |..+..+... .. ...+|+|||+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l~--~~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---LK--KVDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---hh--cCCEEEEecccC
Confidence 46789999999999999999999987 56778888888875422 1222222221 22 235999999977
Q ss_pred h
Q 003691 582 I 582 (802)
Q Consensus 582 l 582 (802)
.
T Consensus 179 ~ 179 (254)
T COG1484 179 E 179 (254)
T ss_pred c
Confidence 5
No 451
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.17 E-value=3.1e-06 Score=86.86 Aligned_cols=110 Identities=21% Similarity=0.285 Sum_probs=77.6
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcE--EEEechhhh-------------------------hhccch--h
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--FLINGPEIM-------------------------SKLAGE--S 282 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~--v~v~~~~l~-------------------------~~~~g~--~ 282 (802)
+|.+..++.+.|+|++||||||++|.+.+...... +..+|.++. .+|..+ .
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 45678899999999999999999999999876432 455543321 122222 2
Q ss_pred HHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC
Q 003691 283 ESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 351 (802)
Q Consensus 283 ~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~ 351 (802)
.++-|-.++.|..-.|.+++.||.-+.+ +..+..+.+++|..++...++..+..+++..
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaL----------DvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~ 171 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSAL----------DVSVQAQILNLLKDLQEELGLTYLFISHDLS 171 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhc----------chhHHHHHHHHHHHHHHHhCCeEEEEEEEHH
Confidence 3455667778888899999999966543 3345677788887777776666666676543
No 452
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=4.8e-05 Score=82.79 Aligned_cols=127 Identities=14% Similarity=0.191 Sum_probs=87.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEEechhhhhhccchhHHHHHHHHHH
Q 003691 237 PPKGILLYGPPGSGKTLIARAVANETGAF------------------------FFLINGPEIMSKLAGESESNLRKAFEE 292 (802)
Q Consensus 237 ~~~~vLL~GppGtGKTtLar~la~~l~~~------------------------~v~v~~~~l~~~~~g~~~~~l~~vf~~ 292 (802)
.+..+||+||+|+||+++|+++|+.+-.. +..+... .....-.-..+|.+.+.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~~~~I~idqiR~l~~~ 99 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPE---KGKSSLGVDAVREVTEK 99 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecc---cccccCCHHHHHHHHHH
Confidence 35679999999999999999999886321 1112110 00001123456665555
Q ss_pred HH----hcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEE
Q 003691 293 AE----KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREID 368 (802)
Q Consensus 293 a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~ 368 (802)
+. ...-.|++||++|.+. ....+.|++.|++- ....++|.+|+.++.+.|.+++ |.. .+.
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTIrS--RCq-~~~ 163 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLT-----------DAAANALLKTLEEP--PENTWFFLACREPARLLATLRS--RCR-LHY 163 (334)
T ss_pred HhhccccCCceEEEEcchHhhC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHh--ccc-ccc
Confidence 43 2345699999999875 33568899999874 3467778888999999999998 664 578
Q ss_pred eCCCCHHHHHHHHH
Q 003691 369 IGVPDEVGRLEILR 382 (802)
Q Consensus 369 i~~P~~~~R~~Il~ 382 (802)
+++|+.++..+.|.
T Consensus 164 ~~~~~~~~~~~~L~ 177 (334)
T PRK07993 164 LAPPPEQYALTWLS 177 (334)
T ss_pred CCCCCHHHHHHHHH
Confidence 99998887777665
No 453
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.17 E-value=5.4e-06 Score=82.16 Aligned_cols=110 Identities=19% Similarity=0.219 Sum_probs=67.0
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh------h---cc------------------chh
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS------K---LA------------------GES 282 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~l~~------~---~~------------------g~~ 282 (802)
++.+.+++.+.|.||+|+|||||+++|++..... -+.+++.++.. . +. =..
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 4567889999999999999999999999986432 24444432210 0 00 011
Q ss_pred HHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC
Q 003691 283 ESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 353 (802)
Q Consensus 283 ~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~l 353 (802)
.++-+..+..+....|.++++||...-+ +......+.+.+..+.. ...+|.+|+.++.+
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~ 160 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGL----------DPITERQLLSLIFEVLK--DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHcC--CCEEEEEecCHHHH
Confidence 2445566777777899999999955432 22223344444444432 23455566765543
No 454
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.17 E-value=5.4e-06 Score=98.48 Aligned_cols=161 Identities=21% Similarity=0.167 Sum_probs=90.1
Q ss_pred ccccchhhhhhhhhhcCcCCChhhhh--------hccCCCCceeeeecCCCCchhHHHHHHHHHhCC-------eEEEEe
Q 003691 479 IGGLDNVKRELQETVQYPVEHPEKFE--------KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISVK 543 (802)
Q Consensus 479 i~g~~~~k~~l~~~i~~~~~~~~~~~--------~~~~~~~~gill~GppGtGKT~lakala~~~~~-------~~i~v~ 543 (802)
|.|.+.+|+.+.-.+........... ...++...+|||+|+||||||.+|++++..... ++..+.
T Consensus 452 I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vg 531 (915)
T PTZ00111 452 IKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVG 531 (915)
T ss_pred EECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcccc
Confidence 56788888776443322211000000 012334446999999999999999999987532 233322
Q ss_pred Ccchhhhc---cCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC--------
Q 003691 544 GPELLTMW---FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-------- 612 (802)
Q Consensus 544 ~~~l~~~~---vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-------- 612 (802)
........ .|+.....+ .+..|. -.+++|||++.+- ......|+..|+...
T Consensus 532 LTa~~~~~d~~tG~~~le~G-aLvlAd---gGtL~IDEidkms--------------~~~Q~aLlEaMEqqtIsI~KaGi 593 (915)
T PTZ00111 532 LTASIKFNESDNGRAMIQPG-AVVLAN---GGVCCIDELDKCH--------------NESRLSLYEVMEQQTVTIAKAGI 593 (915)
T ss_pred ccchhhhcccccCcccccCC-cEEEcC---CCeEEecchhhCC--------------HHHHHHHHHHHhCCEEEEecCCc
Confidence 22111000 000000000 111122 2499999999973 345566777775431
Q ss_pred ---CCCcEEEEEecCCCC-------------CCCccccCCCCcceEE-EecCCCHHHHHHHHHH
Q 003691 613 ---AKKTVFIIGATNRPD-------------IIDPALLRPGRLDQLI-YIPLPDEASRLQIFKA 659 (802)
Q Consensus 613 ---~~~~v~vi~aTn~~~-------------~ld~allr~gRf~~~i-~~~~p~~~~r~~Il~~ 659 (802)
-..++-||||+|..+ .|.+++++ |||.+. ..+.|+.+.=..|-++
T Consensus 594 ~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~h 655 (915)
T PTZ00111 594 VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLS 655 (915)
T ss_pred ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHH
Confidence 124789999999752 36789998 999665 5567776654444433
No 455
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.17 E-value=9e-06 Score=87.98 Aligned_cols=99 Identities=22% Similarity=0.401 Sum_probs=60.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhccch---hHHHHHHHHHHHHhcCCeEEEecccccccC
Q 003691 238 PKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGE---SESNLRKAFEEAEKNAPSIIFIDELDSIAP 311 (802)
Q Consensus 238 ~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~---~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 311 (802)
..+++|+||+|+|||+|+.++|.++ +..++.++..+++...... ........++.. ....+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCC
Confidence 4789999999999999999999986 5677888887776533211 001111123332 3457999999876532
Q ss_pred CCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecC
Q 003691 312 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATN 348 (802)
Q Consensus 312 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn 348 (802)
+ ......|..+++.......-+|| +||
T Consensus 261 t---------~~~~~~Lf~iin~R~~~~k~tIi-TSN 287 (329)
T PRK06835 261 T---------EFSKSELFNLINKRLLRQKKMII-STN 287 (329)
T ss_pred C---------HHHHHHHHHHHHHHHHCCCCEEE-ECC
Confidence 1 12234556666554333333444 455
No 456
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.17 E-value=7e-06 Score=89.38 Aligned_cols=149 Identities=22% Similarity=0.268 Sum_probs=88.6
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh--
Q 003691 203 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSK-- 277 (802)
Q Consensus 203 ~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~~~-- 277 (802)
++++.|.+..++++++.+.... ..+..|||+|++||||+++|+++-... +.+++.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 4568888888888877775311 345689999999999999999997654 357999999765211
Q ss_pred ---ccchhH-------HHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhccc---------CC
Q 003691 278 ---LAGESE-------SNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SR 338 (802)
Q Consensus 278 ---~~g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~ 338 (802)
..|... ......+.. .....|||||++.+.. .+...|+..++.-. ..
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~~-----------~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM-----------LVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceee
Confidence 111000 000112222 2346899999998753 23345555554311 01
Q ss_pred CcEEEEEecCCC-------CCCCHHhhccCCcceEEEeCCCCHHHHHH
Q 003691 339 AHVIVMGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLE 379 (802)
Q Consensus 339 ~~vivI~~tn~~-------~~ld~al~r~~rf~~~i~i~~P~~~~R~~ 379 (802)
..+-+|++++.. ..+.+.|.. ||. .+.+..|...+|.+
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~e 184 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQS 184 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhh
Confidence 246677776642 233344443 442 24566677666654
No 457
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.17 E-value=8e-06 Score=88.87 Aligned_cols=147 Identities=22% Similarity=0.267 Sum_probs=84.1
Q ss_pred cChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhcc----
Q 003691 207 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLA---- 279 (802)
Q Consensus 207 ~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~~~~~---- 279 (802)
.|....++++++.+... ......|||+|++||||+++|++|-... +.+|+.|+|..+.....
T Consensus 2 iG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 45566666666655431 1335679999999999999999997654 36899999975532110
Q ss_pred -chhH-------HHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhccc---------CCCcEE
Q 003691 280 -GESE-------SNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVI 342 (802)
Q Consensus 280 -g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~vi 342 (802)
|... ..-...|+.+ ....|||||++.+.. .+...|+..++.-. ....+-
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASL-----------LVQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCH-----------HHHHHHHHHHHcCcEEecCCCceeccceE
Confidence 1000 0000113322 346899999998742 23455555554321 123567
Q ss_pred EEEecCCC-------CCCCHHhhccCCcceEEEeCCCCHHHHHHHH
Q 003691 343 VMGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLEIL 381 (802)
Q Consensus 343 vI~~tn~~-------~~ld~al~r~~rf~~~i~i~~P~~~~R~~Il 381 (802)
+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+-+
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI 179 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDI 179 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhH
Confidence 77777643 122233332 342 3467777777776433
No 458
>PRK06921 hypothetical protein; Provisional
Probab=98.16 E-value=9.7e-06 Score=85.45 Aligned_cols=69 Identities=30% Similarity=0.396 Sum_probs=45.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh----CCcEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEeccccc
Q 003691 237 PPKGILLYGPPGSGKTLIARAVANET----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDS 308 (802)
Q Consensus 237 ~~~~vLL~GppGtGKTtLar~la~~l----~~~~v~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~ 308 (802)
.+.+++|+||+|+|||+|+.++|+++ +..++++...+++....... ......++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 46789999999999999999999876 44566777666544321111 1112222222 3467999999954
No 459
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.16 E-value=4.1e-06 Score=82.65 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=65.9
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh-----------------hccc---------hhH
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS-----------------KLAG---------ESE 283 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~l~~-----------------~~~g---------~~~ 283 (802)
++.+.+++.+.|.||+|+|||||++.|++.+... -+.+++..+.. .+.+ ...
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4556889999999999999999999999976421 13333321100 0011 123
Q ss_pred HHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC
Q 003691 284 SNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 351 (802)
Q Consensus 284 ~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~ 351 (802)
++-+..+..+....|.++++||....+ +......+.+.+..+..+. ..+|.+|++++
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~~~g-~tiii~th~~~ 156 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGL----------DPESRREFWELLRELKKEG-KTILLSSHILE 156 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHHHCC-CEEEEECCCHH
Confidence 344556777778899999999955433 2233344455554443332 34555667654
No 460
>PRK06921 hypothetical protein; Provisional
Probab=98.15 E-value=3.3e-06 Score=88.94 Aligned_cols=69 Identities=25% Similarity=0.256 Sum_probs=45.3
Q ss_pred CCceeeeecCCCCchhHHHHHHHHHh----CCeEEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcccch
Q 003691 510 PSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDS 581 (802)
Q Consensus 510 ~~~gill~GppGtGKT~lakala~~~----~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~ 581 (802)
...+++|+||||+|||+|+.++|.++ +...+.+...+++..... ........++... ...+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~-~~~~~~~~~~~~~--~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKD-DFDLLEAKLNRMK--KVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHH-HHHHHHHHHHHhc--CCCEEEEecccc
Confidence 35679999999999999999999986 455677776666543211 1111222233332 346999999954
No 461
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.15 E-value=2.6e-06 Score=84.50 Aligned_cols=112 Identities=21% Similarity=0.332 Sum_probs=67.2
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh--------------------hcc----------
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS--------------------KLA---------- 279 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~l~~--------------------~~~---------- 279 (802)
++.+.+++.+.|.||+|+|||||+++|++.+... -+.+++.++.. .+.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheee
Confidence 4556889999999999999999999999876432 23333321100 000
Q ss_pred -chhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCC
Q 003691 280 -GESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSI 353 (802)
Q Consensus 280 -g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~l 353 (802)
-...++-+..+..+....|.++++||-...+ +......+.+++..+.......++.++++++.+
T Consensus 100 ~lS~G~~qr~~la~al~~~p~llilDEP~~~L----------D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSAL----------DPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164 (178)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 0112445566777778899999999954332 233344455555544443223455566665433
No 462
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.15 E-value=7.6e-06 Score=80.72 Aligned_cols=109 Identities=22% Similarity=0.318 Sum_probs=66.6
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh-------h---cc---------------chhHH
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS-------K---LA---------------GESES 284 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~l~~-------~---~~---------------g~~~~ 284 (802)
++.+.+++.+.|.||+|+|||||+++|++..... -+.+++.++.. . +. =...+
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHH
Confidence 3456789999999999999999999999986432 24444422210 0 00 01234
Q ss_pred HHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC
Q 003691 285 NLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 351 (802)
Q Consensus 285 ~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~ 351 (802)
+-+..+..+....|.++++||.-..+ +......+.+.+..+... ...+|.+|++.+
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~~~~-~~tii~~sh~~~ 157 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHL----------DVEGERALNQAIAALKAA-GATRIVIAHRPE 157 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccc----------CHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 45666777778899999999954332 233334445555444332 334555666654
No 463
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.15 E-value=2.3e-05 Score=84.77 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=26.8
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhCCcE
Q 003691 236 KPPKGILLYGPPGSGKTLIARAVANETGAFF 266 (802)
Q Consensus 236 ~~~~~vLL~GppGtGKTtLar~la~~l~~~~ 266 (802)
.+++.+.|.|++|.||||.++.||+++...+
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PNL 128 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPNL 128 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccCC
Confidence 4677899999999999999999999975443
No 464
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.15 E-value=2.6e-05 Score=90.29 Aligned_cols=150 Identities=25% Similarity=0.364 Sum_probs=91.2
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhc
Q 003691 202 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKL 278 (802)
Q Consensus 202 ~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~~~~ 278 (802)
.+.++.|....++++.+.+..- ...+..|||+|++||||+++|++|-... +.+++.+||..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 5678999999998888877641 1346689999999999999999998775 4689999997653211
Q ss_pred -----cchhH-------HHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhccc---------C
Q 003691 279 -----AGESE-------SNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------S 337 (802)
Q Consensus 279 -----~g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~ 337 (802)
.|... ..-...|+.+ ....|||||++.+.. .+...|+..++.-. .
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPL-----------ALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCH-----------HHHHHHHHHHhcCCEeeCCCCcce
Confidence 11000 0000123332 345899999998853 23345555554211 1
Q ss_pred CCcEEEEEecCCCC-------CCCHHhhccCCcceEEEeCCCCHHHHHH
Q 003691 338 RAHVIVMGATNRPN-------SIDPALRRFGRFDREIDIGVPDEVGRLE 379 (802)
Q Consensus 338 ~~~vivI~~tn~~~-------~ld~al~r~~rf~~~i~i~~P~~~~R~~ 379 (802)
...+-+|++|+..- .+.+.|-. |+ ..+.+..|...+|.+
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl-~~~~i~lPpLreR~e 365 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RL-SVFPLSVPPLRERGD 365 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--cc-cccEeeCCCchhchh
Confidence 13567777777531 12222222 23 234567777777754
No 465
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.15 E-value=1.1e-05 Score=94.34 Aligned_cols=134 Identities=19% Similarity=0.298 Sum_probs=84.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhCC--cEEEEechhhhhhccchh--HHHHH---HHHHH--HHhcCCeEEEecccccc
Q 003691 239 KGILLYGPPGSGKTLIARAVANETGA--FFFLINGPEIMSKLAGES--ESNLR---KAFEE--AEKNAPSIIFIDELDSI 309 (802)
Q Consensus 239 ~~vLL~GppGtGKTtLar~la~~l~~--~~v~v~~~~l~~~~~g~~--~~~l~---~vf~~--a~~~~p~il~iDEid~l 309 (802)
.+|||.|+||||||+++++++..++. +|+.+..........|.. ...+. ..|+. .......+||+||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 47999999999999999999998764 477776422222222221 00000 00000 00112358999999987
Q ss_pred cCCCCCCchhHHHHHHHHHHHhhhccc-----------CCCcEEEEEecCCCC---CCCHHhhccCCcceEEEeC-CCCH
Q 003691 310 APKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVMGATNRPN---SIDPALRRFGRFDREIDIG-VPDE 374 (802)
Q Consensus 310 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~vivI~~tn~~~---~ld~al~r~~rf~~~i~i~-~P~~ 374 (802)
.+ .+...|+..|+.-. ....+.+|+++|..+ .+.+++.. ||...+.+. .|+.
T Consensus 97 ~~-----------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~ 163 (589)
T TIGR02031 97 DD-----------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQ 163 (589)
T ss_pred CH-----------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCH
Confidence 53 34566777775321 123578888888765 67788877 888776655 4567
Q ss_pred HHHHHHHHHHh
Q 003691 375 VGRLEILRIHT 385 (802)
Q Consensus 375 ~~R~~Il~~~~ 385 (802)
.+|.+|++...
T Consensus 164 ~er~eil~~~~ 174 (589)
T TIGR02031 164 DLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHH
Confidence 77888887644
No 466
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.14 E-value=5.5e-06 Score=90.47 Aligned_cols=126 Identities=23% Similarity=0.361 Sum_probs=83.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHH----hCCcEEEEechhh
Q 003691 199 NEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE----TGAFFFLINGPEI 274 (802)
Q Consensus 199 ~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~----l~~~~v~v~~~~l 274 (802)
....++++.|-+...+++++.+.. + ...+.+|||+|++||||+.+|++|... ...+|+.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~---~--------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA---Y--------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh---h--------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 455778899999999998888864 1 134678999999999999999998643 3568999999776
Q ss_pred hhhccc-----h-------hHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcc-----cC
Q 003691 275 MSKLAG-----E-------SESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGL-----KS 337 (802)
Q Consensus 275 ~~~~~g-----~-------~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-----~~ 337 (802)
...... . ....-..+|+.|.. ..||+|||..+.+. ....|+..++.- ..
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~~-----------~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPPE-----------GQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCHh-----------HHHHHHHHHHcCceEecCC
Confidence 432111 0 11111234444433 48999999988643 345677777641 11
Q ss_pred ----CCcEEEEEecCC
Q 003691 338 ----RAHVIVMGATNR 349 (802)
Q Consensus 338 ----~~~vivI~~tn~ 349 (802)
...|-+|++|+.
T Consensus 208 ~~~~~~dVRli~AT~~ 223 (403)
T COG1221 208 SQPRPVDVRLICATTE 223 (403)
T ss_pred CCCcCCCceeeecccc
Confidence 235777777763
No 467
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.14 E-value=4.7e-05 Score=87.17 Aligned_cols=65 Identities=28% Similarity=0.423 Sum_probs=52.2
Q ss_pred cccCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 003691 196 ERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFL 268 (802)
Q Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~v~ 268 (802)
+++.+.+.++|.-..+-+++++.+++..+ .+-.+..-+||+|||||||||+++.||++++..+.+
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 46778888999999999999999987422 122345578999999999999999999999877654
No 468
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.14 E-value=3e-06 Score=82.19 Aligned_cols=78 Identities=29% Similarity=0.370 Sum_probs=53.2
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh-------hcc-----chhHHHHHHHHHHHHhcC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMS-------KLA-----GESESNLRKAFEEAEKNA 297 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~l~~-------~~~-----g~~~~~l~~vf~~a~~~~ 297 (802)
++.+.+++.++|.|++|+|||||+++|++.+... -+.+++..+.. ... -...+.-+..+..+....
T Consensus 19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLN 98 (157)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcC
Confidence 4556788999999999999999999999987533 25555533211 001 112344455566677778
Q ss_pred CeEEEecccccc
Q 003691 298 PSIIFIDELDSI 309 (802)
Q Consensus 298 p~il~iDEid~l 309 (802)
|.++++||...-
T Consensus 99 ~~i~ilDEp~~~ 110 (157)
T cd00267 99 PDLLLLDEPTSG 110 (157)
T ss_pred CCEEEEeCCCcC
Confidence 999999996543
No 469
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.12 E-value=9.7e-06 Score=92.08 Aligned_cols=125 Identities=23% Similarity=0.371 Sum_probs=74.8
Q ss_pred CCCCcEEEEECCCCCcHHHHHHHHHHHhCCcE--EEEechhhhh---h-----------------------ccchhHHHH
Q 003691 235 VKPPKGILLYGPPGSGKTLIARAVANETGAFF--FLINGPEIMS---K-----------------------LAGESESNL 286 (802)
Q Consensus 235 i~~~~~vLL~GppGtGKTtLar~la~~l~~~~--v~v~~~~l~~---~-----------------------~~g~~~~~l 286 (802)
+..+.+++|+||||||||+|++.+++.+...- ..+.+..+.+ . ..|.....-
T Consensus 207 a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~ 286 (506)
T PRK09862 207 AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPG 286 (506)
T ss_pred ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceeh
Confidence 45678999999999999999999998875321 1222222211 0 000000000
Q ss_pred HHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhccc-----------CCCcEEEEEecCCCC----
Q 003691 287 RKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVMGATNRPN---- 351 (802)
Q Consensus 287 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~vivI~~tn~~~---- 351 (802)
...+..|. ..+||+||++.+- ..+...|++.|+.-. ....+.+|+++|+..
T Consensus 287 pG~l~~A~---gGvLfLDEi~e~~-----------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~ 352 (506)
T PRK09862 287 PGEISLAH---NGVLFLDELPEFE-----------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHY 352 (506)
T ss_pred hhHhhhcc---CCEEecCCchhCC-----------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceec
Confidence 11233332 3599999987652 345566666664321 134688999998752
Q ss_pred -----------------CCCHHhhccCCcceEEEeCCCCHH
Q 003691 352 -----------------SIDPALRRFGRFDREIDIGVPDEV 375 (802)
Q Consensus 352 -----------------~ld~al~r~~rf~~~i~i~~P~~~ 375 (802)
.+...+.. ||+..+.++.|+..
T Consensus 353 ~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 353 QGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 24445544 89998999888765
No 470
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.12 E-value=2.2e-05 Score=75.96 Aligned_cols=111 Identities=22% Similarity=0.246 Sum_probs=61.9
Q ss_pred eeeecCCCCchhHHHHHHHHHh---CCeEEEEeCcchhhh----------------------ccCc--cHHHHHHHHHHH
Q 003691 514 VLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM----------------------WFGE--SEANVREIFDKA 566 (802)
Q Consensus 514 ill~GppGtGKT~lakala~~~---~~~~i~v~~~~l~~~----------------------~vg~--se~~i~~lf~~a 566 (802)
++++||||+|||++++.++... +.+.+.+........ +... ........+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999887 345555554332210 0000 111122234556
Q ss_pred hhCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCC
Q 003691 567 RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDI 628 (802)
Q Consensus 567 ~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ 628 (802)
....+.++++||+..+................+.+..++..+. ..++.++++++.+..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~~ 139 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPSG 139 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCCc
Confidence 6678899999999998754221000111222334444444433 335566666665543
No 471
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=0.0002 Score=75.85 Aligned_cols=128 Identities=17% Similarity=0.256 Sum_probs=83.8
Q ss_pred CCCceeeeecCCCCchhHHHHHHHHHhCCeE----------------EEEeCcchhhhc-cCc--cHHHHHHHHHHHh--
Q 003691 509 SPSKGVLFYGPPGCGKTLLAKAIANECQANF----------------ISVKGPELLTMW-FGE--SEANVREIFDKAR-- 567 (802)
Q Consensus 509 ~~~~gill~GppGtGKT~lakala~~~~~~~----------------i~v~~~~l~~~~-vg~--se~~i~~lf~~a~-- 567 (802)
+.+..+||+|| .||+++|+.+|..+-..- ..-+-+|+.--. .|. .-..||.+-+...
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 45667999996 689999999997752110 000112221000 011 2345565554443
Q ss_pred --hCCCeEEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCCCCCCccccCCCCcceEEEe
Q 003691 568 --QSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYI 645 (802)
Q Consensus 568 --~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr~gRf~~~i~~ 645 (802)
.....|++||++|.+. ....|.||+.|+. +..++++|.+|+.++.|-|.+++ |+. .++|
T Consensus 100 p~~~~~kV~II~~ad~m~--------------~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rcq-~i~f 160 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH--------------VNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RTQ-IFHF 160 (290)
T ss_pred cccCCcEEEEeehhhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cce-eeeC
Confidence 3445799999999973 4457899999994 55678888888889999999887 996 7888
Q ss_pred cCCCHHHHHHHHH
Q 003691 646 PLPDEASRLQIFK 658 (802)
Q Consensus 646 ~~p~~~~r~~Il~ 658 (802)
++ +.+...+++.
T Consensus 161 ~~-~~~~~~~~L~ 172 (290)
T PRK07276 161 PK-NEAYLIQLLE 172 (290)
T ss_pred CC-cHHHHHHHHH
Confidence 76 5555555554
No 472
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.11 E-value=9e-06 Score=93.41 Aligned_cols=151 Identities=26% Similarity=0.401 Sum_probs=91.1
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHH-----------hCCcEEEE
Q 003691 201 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE-----------TGAFFFLI 269 (802)
Q Consensus 201 ~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~-----------l~~~~v~v 269 (802)
-.|+++.|....++++++.+...- .....|||+|++||||+++|++|-.. .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 368889999999999888875311 23568999999999999999999776 34689999
Q ss_pred echhhhhhc-----cchhHH--------HHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhccc
Q 003691 270 NGPEIMSKL-----AGESES--------NLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (802)
Q Consensus 270 ~~~~l~~~~-----~g~~~~--------~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~ 336 (802)
||..+.... .|.... .-...|+.+ ....||||||+.+... ....|+..++.-.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~-----------~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMPLP-----------LQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCCHH-----------HHHHHHhhhhcCe
Confidence 997653211 110000 001133333 2358999999987532 3345555554311
Q ss_pred ---------CCCcEEEEEecCCCCCCCHHhhccCCcc-------eEEEeCCCCHHHHHH
Q 003691 337 ---------SRAHVIVMGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLE 379 (802)
Q Consensus 337 ---------~~~~vivI~~tn~~~~ld~al~r~~rf~-------~~i~i~~P~~~~R~~ 379 (802)
....+-+|++|+.. +.... ..|+|. ..+.+..|...+|.+
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~--L~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~e 406 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCD--LEEDV-RQGRFRRDLFYRLSILRLQLPPLRERVA 406 (538)
T ss_pred EEecCCCceeccceEEEEecCCC--HHHHH-hcccchHHHHHHhcCCeecCCChhhchh
Confidence 11245677777653 21111 111221 235677777777764
No 473
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=8.8e-05 Score=79.84 Aligned_cols=129 Identities=20% Similarity=0.315 Sum_probs=86.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCCc---------------------EEEEe-chhhhhh--ccchhHHHHHHHHHHH
Q 003691 238 PKGILLYGPPGSGKTLIARAVANETGAF---------------------FFLIN-GPEIMSK--LAGESESNLRKAFEEA 293 (802)
Q Consensus 238 ~~~vLL~GppGtGKTtLar~la~~l~~~---------------------~v~v~-~~~l~~~--~~g~~~~~l~~vf~~a 293 (802)
+..+||+||+|+||+++|.++|..+-.. +..+. .++-.+. ...-.-..+|.+.+.+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 4579999999999999999999876321 11111 0000000 0001234566666554
Q ss_pred Hh----cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEe
Q 003691 294 EK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDI 369 (802)
Q Consensus 294 ~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i 369 (802)
.. ..-.|++||++|.+. ....+.|++.|++... .+++|.+++.++.+.|.+++ |+ ..+.+
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEPp~--~~~fiL~~~~~~~lLpTIrS--RC-q~i~~ 169 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAIN-----------RAACNALLKTLEEPSP--GRYLWLISAQPARLPATIRS--RC-QRLEF 169 (319)
T ss_pred hhCcccCCcEEEEeccHhhhC-----------HHHHHHHHHHhhCCCC--CCeEEEEECChhhCchHHHh--hh-eEeeC
Confidence 32 223699999999884 3356788999987543 55666678889999999998 66 56789
Q ss_pred CCCCHHHHHHHHH
Q 003691 370 GVPDEVGRLEILR 382 (802)
Q Consensus 370 ~~P~~~~R~~Il~ 382 (802)
+.|+.++-.+.|.
T Consensus 170 ~~~~~~~~~~~L~ 182 (319)
T PRK08769 170 KLPPAHEALAWLL 182 (319)
T ss_pred CCcCHHHHHHHHH
Confidence 9999887777775
No 474
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.11 E-value=2.5e-06 Score=80.80 Aligned_cols=106 Identities=27% Similarity=0.464 Sum_probs=64.7
Q ss_pred CceeeeecCCCCchhHHHHHHHHHhCC---eEEEEeCcchhhhccCccHHHHHHHHHHHhhCCCeEEEEcccchhhhccC
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANECQA---NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 587 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~~~---~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~il~iDEid~l~~~r~ 587 (802)
...|+|+|++||||+++|+++...... +|+.+++..+. .++++.+ ....+||+|||.+-
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~---- 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS---- 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-----
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC----
Confidence 345999999999999999999988764 45555555431 4466665 33599999999984
Q ss_pred CCCCCCCCchHHHHHHHHHHhhccCCCCcEEEEEecCCC--C-----CCCccccCCCCcc-eEEEecC
Q 003691 588 SSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP--D-----IIDPALLRPGRLD-QLIYIPL 647 (802)
Q Consensus 588 ~~~~~~~~~~~~vl~~lL~~ld~~~~~~~v~vi~aTn~~--~-----~ld~allr~gRf~-~~i~~~~ 647 (802)
......|+..++... ..++-+|+++..+ + .+++.|.. ||. ..|++|+
T Consensus 83 ----------~~~Q~~L~~~l~~~~-~~~~RlI~ss~~~l~~l~~~~~~~~~L~~--~l~~~~i~lPp 137 (138)
T PF14532_consen 83 ----------PEAQRRLLDLLKRQE-RSNVRLIASSSQDLEELVEEGRFSPDLYY--RLSQLEIHLPP 137 (138)
T ss_dssp ----------HHHHHHHHHHHHHCT-TTTSEEEEEECC-CCCHHHHSTHHHHHHH--HCSTCEEEE--
T ss_pred ----------HHHHHHHHHHHHhcC-CCCeEEEEEeCCCHHHHhhccchhHHHHH--HhCCCEEeCCC
Confidence 345566666666543 2333444444332 2 24455554 554 4566665
No 475
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.10 E-value=1.1e-05 Score=81.23 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=28.6
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
+|.+.+++++.|+||+|+|||||++.++++..
T Consensus 51 sW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ 82 (257)
T COG1119 51 SWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP 82 (257)
T ss_pred ceeecCCCcEEEECCCCCCHHHHHHHHhcccC
Confidence 45678999999999999999999999998764
No 476
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.09 E-value=1.9e-05 Score=90.35 Aligned_cols=169 Identities=23% Similarity=0.258 Sum_probs=96.9
Q ss_pred CceeeeecCCCCchhHHHHHHHHHhC---CeEEEEeCcchhhhc-----cCccH-------HHHHHHHHHHhhCCCeEEE
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMW-----FGESE-------ANVREIFDKARQSAPCVLF 575 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~~~-----vg~se-------~~i~~lf~~a~~~~p~il~ 575 (802)
...++++|++||||+++|+++..... .+|+.++|..+.... +|... ......|..| ....||
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 238 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLF 238 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeEC---CCCEEE
Confidence 34599999999999999999988764 589999998763221 11100 0001112222 235899
Q ss_pred EcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC----C-----CCcEEEEEecCCC-------CCCCccccCCCCc
Q 003691 576 FDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN----A-----KKTVFIIGATNRP-------DIIDPALLRPGRL 639 (802)
Q Consensus 576 iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~----~-----~~~v~vi~aTn~~-------~~ld~allr~gRf 639 (802)
||||+.+. ..+...|+..++... + .-++-||+||+.. ..+.+.|.. |+
T Consensus 239 l~~i~~l~--------------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l 302 (445)
T TIGR02915 239 LDEIGDLP--------------LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RI 302 (445)
T ss_pred EechhhCC--------------HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hh
Confidence 99999974 346677777776421 0 1257788888765 223344433 44
Q ss_pred c-eEEEecCCCHHHHH----HHHHHHhccC----CCC-CccC---HHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q 003691 640 D-QLIYIPLPDEASRL----QIFKACLRKS----PIS-PDVD---LSALARYTHGFSGADITEVCQRACKYAIR 700 (802)
Q Consensus 640 ~-~~i~~~~p~~~~r~----~Il~~~l~~~----~~~-~~~~---~~~la~~t~g~sg~di~~~~~~a~~~a~~ 700 (802)
. ..|++|+. .+|. .+++.+++++ ... ...+ +..|..+.=--+-+++++++++|+..+-.
T Consensus 303 ~~~~i~lPpL--r~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~~ 374 (445)
T TIGR02915 303 AEISITIPPL--RSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAEG 374 (445)
T ss_pred ccceecCCCc--hhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 3 34455544 4443 3444444332 111 1122 33444332223458999999998876543
No 477
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=2e-05 Score=85.39 Aligned_cols=131 Identities=20% Similarity=0.306 Sum_probs=86.3
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhCC-------------------------cEEEEechh---hhhhc-cchhHHHH
Q 003691 236 KPPKGILLYGPPGSGKTLIARAVANETGA-------------------------FFFLINGPE---IMSKL-AGESESNL 286 (802)
Q Consensus 236 ~~~~~vLL~GppGtGKTtLar~la~~l~~-------------------------~~v~v~~~~---l~~~~-~g~~~~~l 286 (802)
.-+..+||+||+|+|||++|+.+|+.+.. .++.+.... --++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34567999999999999999999988632 122232110 00000 00134566
Q ss_pred HHHHHHHHh----cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCC
Q 003691 287 RKAFEEAEK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGR 362 (802)
Q Consensus 287 ~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~r 362 (802)
|.+.+.+.. ....|+++|+++.+- ....+.|++.++.... ...+|.+|+.++.+.+.+++ |
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld-----------~~a~naLLk~LEep~~--~~~~Ilvth~~~~ll~ti~S--R 163 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN-----------LQAANSLLKVLEEPPP--QVVFLLVSHAADKVLPTIKS--R 163 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC-----------HHHHHHHHHHHHhCcC--CCEEEEEeCChHhChHHHHH--H
Confidence 777666543 234588888888763 3345677888877643 35566688889999999887 5
Q ss_pred cceEEEeCCCCHHHHHHHHH
Q 003691 363 FDREIDIGVPDEVGRLEILR 382 (802)
Q Consensus 363 f~~~i~i~~P~~~~R~~Il~ 382 (802)
+ ..+.+++|+.++..+.|.
T Consensus 164 c-~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHH
Confidence 4 567889998888777765
No 478
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.08 E-value=1.6e-05 Score=92.77 Aligned_cols=63 Identities=25% Similarity=0.348 Sum_probs=51.6
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhh
Q 003691 201 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEI 274 (802)
Q Consensus 201 ~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l 274 (802)
..++++.|.+..++++.+.+.... .....|||+|++||||+++|++|.... +.+|+.++|..+
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL 258 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCC
Confidence 578889999999998887775411 345689999999999999999998775 468999999765
No 479
>PRK15115 response regulator GlrR; Provisional
Probab=98.08 E-value=1.2e-05 Score=91.74 Aligned_cols=163 Identities=25% Similarity=0.363 Sum_probs=95.4
Q ss_pred ceeeeecCCCCchhHHHHHHHHHhC---CeEEEEeCcchhhhccCccHHHHHHHHHHHh---------------hCCCeE
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFGESEANVREIFDKAR---------------QSAPCV 573 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~---------------~~~p~i 573 (802)
..++++|++|||||++|+++..... .+|+.+++..+.... .-..+|..++ ......
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQL------LESELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHH------HHHHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 3599999999999999999998864 689999998763211 1112222111 122358
Q ss_pred EEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC-----C----CCcEEEEEecCCCCCCCccccCCCCcce---
Q 003691 574 LFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----A----KKTVFIIGATNRPDIIDPALLRPGRLDQ--- 641 (802)
Q Consensus 574 l~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----~----~~~v~vi~aTn~~~~ld~allr~gRf~~--- 641 (802)
||||||+.+. ......|+..|+... . ..++.+|+||+.. ++..+.+ |+|..
T Consensus 232 l~l~~i~~l~--------------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~ 294 (444)
T PRK15115 232 LFLDEIGDMP--------------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFREDLY 294 (444)
T ss_pred EEEEccccCC--------------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHH
Confidence 9999999984 345566777776422 1 1257888999863 4433333 45521
Q ss_pred ----EEEecCCCHHHHH----HHHHHHhccC----C-----CCCccCHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 003691 642 ----LIYIPLPDEASRL----QIFKACLRKS----P-----ISPDVDLSALARYTHGFSGADITEVCQRACKYA 698 (802)
Q Consensus 642 ----~i~~~~p~~~~r~----~Il~~~l~~~----~-----~~~~~~~~~la~~t~g~sg~di~~~~~~a~~~a 698 (802)
.+.+..|...+|. .+++.++++. . ++ +.-+..|..+.=--+-++++++++.|+..+
T Consensus 295 ~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~-~~a~~~L~~~~WpgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFS-TDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 (444)
T ss_pred HhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcC-HHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 3344444454543 2444444322 1 11 112344444332235688899998887654
No 480
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=8e-05 Score=80.10 Aligned_cols=128 Identities=15% Similarity=0.229 Sum_probs=88.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhCCc-----------------------EEEEechhhhhhccchhHHHHHHHHHHH
Q 003691 237 PPKGILLYGPPGSGKTLIARAVANETGAF-----------------------FFLINGPEIMSKLAGESESNLRKAFEEA 293 (802)
Q Consensus 237 ~~~~vLL~GppGtGKTtLar~la~~l~~~-----------------------~v~v~~~~l~~~~~g~~~~~l~~vf~~a 293 (802)
-+..+||+||.|+||+++|+.+|+.+-.. ++.+.... .++ .-.-..+|.+.+.+
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~vdqiR~l~~~~ 100 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGK--SITVEQIRQCNRLA 100 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCC--cCCHHHHHHHHHHH
Confidence 35679999999999999999999876321 12221100 000 01234556655444
Q ss_pred Hh----cCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEe
Q 003691 294 EK----NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDI 369 (802)
Q Consensus 294 ~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i 369 (802)
.. ..-.|++||++|.+. ....+.|++.+++-. .++++|..|+.++.+-|.+++ |. ..+.+
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEPp--~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~ 164 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMN-----------ESASNALLKTLEEPA--PNCLFLLVTHNQKRLLPTIVS--RC-QQWVV 164 (319)
T ss_pred hhCcccCCceEEEecchhhhC-----------HHHHHHHHHHhcCCC--CCeEEEEEECChhhChHHHHh--cc-eeEeC
Confidence 32 234699999999874 235578999998743 467777888899999999998 66 56889
Q ss_pred CCCCHHHHHHHHHH
Q 003691 370 GVPDEVGRLEILRI 383 (802)
Q Consensus 370 ~~P~~~~R~~Il~~ 383 (802)
+.|+.++..+.|..
T Consensus 165 ~~~~~~~~~~~L~~ 178 (319)
T PRK06090 165 TPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999888877753
No 481
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.07 E-value=5.6e-05 Score=90.31 Aligned_cols=152 Identities=24% Similarity=0.348 Sum_probs=89.9
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC---CcEEEEechhhhh
Q 003691 200 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFLINGPEIMS 276 (802)
Q Consensus 200 ~~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~---~~~v~v~~~~l~~ 276 (802)
..+|+++.|.+..+.++.+.+.... .....|||+|++||||+++|++|-.... .+|+.+||..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 3468889999988888776665311 2355799999999999999999987653 6899999966521
Q ss_pred -----hccchh----HHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhccc-----C----C
Q 003691 277 -----KLAGES----ESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S----R 338 (802)
Q Consensus 277 -----~~~g~~----~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~----~ 338 (802)
...|.. .......|+. .....||||||+.+... ....|+..++.-. . .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~-----------~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPE-----------LQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceEE
Confidence 111110 0000001222 23468999999987532 3344555554211 0 1
Q ss_pred CcEEEEEecCCCCCCCHHhhccCCcc-------eEEEeCCCCHHHHHH
Q 003691 339 AHVIVMGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLE 379 (802)
Q Consensus 339 ~~vivI~~tn~~~~ld~al~r~~rf~-------~~i~i~~P~~~~R~~ 379 (802)
..+-+|++|+.. +.. +...++|. ..+.+..|...+|.+
T Consensus 456 ~~~riI~~t~~~--l~~-~~~~~~f~~dL~~~l~~~~i~lPpLreR~~ 500 (638)
T PRK11388 456 VDVRVIATTTAD--LAM-LVEQNRFSRQLYYALHAFEITIPPLRMRRE 500 (638)
T ss_pred eeEEEEEeccCC--HHH-HHhcCCChHHHhhhhceeEEeCCChhhhhh
Confidence 246678777753 111 11112331 245677777777753
No 482
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.07 E-value=3.2e-05 Score=93.01 Aligned_cols=150 Identities=25% Similarity=0.384 Sum_probs=91.5
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh
Q 003691 201 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSK 277 (802)
Q Consensus 201 ~~~~~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~~~ 277 (802)
..|+++.|....++.+.+.+..- ......|||+|++|||||++|++|.... +.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 46778999999888887776531 1335689999999999999999998764 468999999765321
Q ss_pred -----ccch--------hHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhccc--------
Q 003691 278 -----LAGE--------SESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 336 (802)
Q Consensus 278 -----~~g~--------~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------- 336 (802)
..|. .....+ .|+. ....+|||||++.+.. .+...|+..++.-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g-~le~---a~~GtL~Ldei~~L~~-----------~~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIG-RFEL---ADKSSLFLDEVGDMPL-----------ELQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred HhhhhhcCcccccccccccchhh-HHHh---cCCCeEEEechhhCCH-----------HHHHHHHHHHHhCCEEeCCCCC
Confidence 1111 111111 2332 2346999999998742 23445555554311
Q ss_pred -CCCcEEEEEecCCCC-------CCCHHhhccCCcceEEEeCCCCHHHHHH
Q 003691 337 -SRAHVIVMGATNRPN-------SIDPALRRFGRFDREIDIGVPDEVGRLE 379 (802)
Q Consensus 337 -~~~~vivI~~tn~~~-------~ld~al~r~~rf~~~i~i~~P~~~~R~~ 379 (802)
....+-+|++|+..- .+...+-. |+ ..+.+..|...+|.+
T Consensus 507 ~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l-~~~~i~lPpLreR~~ 554 (686)
T PRK15429 507 IIQTDVRLIAATNRDLKKMVADREFRSDLYY--RL-NVFPIHLPPLRERPE 554 (686)
T ss_pred cccceEEEEEeCCCCHHHHHHcCcccHHHHh--cc-CeeEEeCCChhhhHh
Confidence 113567777776531 11111211 22 245677787777765
No 483
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.07 E-value=4.4e-06 Score=82.56 Aligned_cols=71 Identities=28% Similarity=0.603 Sum_probs=46.8
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhccch-hHHHHHHHHHHHHhcCCeEEEeccccc
Q 003691 236 KPPKGILLYGPPGSGKTLIARAVANET---GAFFFLINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDELDS 308 (802)
Q Consensus 236 ~~~~~vLL~GppGtGKTtLar~la~~l---~~~~v~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~ 308 (802)
..+.+++|+||+|||||+||.+++.++ +..+..++.++++...... ........++... .+.+|+|||+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 457899999999999999999999765 6778888888886543211 1112233444433 356999999853
No 484
>PF05729 NACHT: NACHT domain
Probab=98.06 E-value=3.1e-05 Score=75.18 Aligned_cols=140 Identities=22% Similarity=0.349 Sum_probs=73.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCC---------cEEEEechhhhhhc------------cchhHHHHHHHHHH-HHhcC
Q 003691 240 GILLYGPPGSGKTLIARAVANETGA---------FFFLINGPEIMSKL------------AGESESNLRKAFEE-AEKNA 297 (802)
Q Consensus 240 ~vLL~GppGtGKTtLar~la~~l~~---------~~v~v~~~~l~~~~------------~g~~~~~l~~vf~~-a~~~~ 297 (802)
-++|+|+||+|||++++.++..+.. ..+.+.+.+..... ...........+.. .....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4899999999999999999976521 12344433322110 01111111112222 22345
Q ss_pred CeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhc-ccCCCcEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHH
Q 003691 298 PSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDG-LKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 376 (802)
Q Consensus 298 p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-~~~~~~vivI~~tn~~~~ld~al~r~~rf~~~i~i~~P~~~~ 376 (802)
..++++|-+|.+...... .........+..++.. ...+.++++. +. +..... +.+...-...+.+...+.++
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~liit--~r-~~~~~~-~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQALPPGVKLIIT--SR-PRAFPD-LRRRLKQAQILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhhccCCCCeEEEE--Ec-CChHHH-HHHhcCCCcEEEECCCCHHH
Confidence 668899999998764332 1122333444455544 2233344443 32 222211 32211122567888889999
Q ss_pred HHHHHHHHhc
Q 003691 377 RLEILRIHTK 386 (802)
Q Consensus 377 R~~Il~~~~~ 386 (802)
..++++.+++
T Consensus 155 ~~~~~~~~f~ 164 (166)
T PF05729_consen 155 IKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHhh
Confidence 9888876654
No 485
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.06 E-value=1.1e-05 Score=81.30 Aligned_cols=108 Identities=23% Similarity=0.297 Sum_probs=64.1
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHh--CCc--EEEEechhhh---------------hhcc-------------
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANET--GAF--FFLINGPEIM---------------SKLA------------- 279 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l--~~~--~v~v~~~~l~---------------~~~~------------- 279 (802)
++.+.+++.+.|.||+|+|||||+++|++.+ ... -+.+++.++. ..+.
T Consensus 29 ~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~ 108 (194)
T cd03213 29 SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK 108 (194)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHH
Confidence 3456889999999999999999999999987 432 1333322110 0000
Q ss_pred ---chhHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCC
Q 003691 280 ---GESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRP 350 (802)
Q Consensus 280 ---g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~ 350 (802)
=...++-+..+..+....|.++++||...-+ +......+.+.+..+... ...+|.+++++
T Consensus 109 ~~~LS~G~~qrv~laral~~~p~illlDEP~~~L----------D~~~~~~l~~~l~~~~~~-~~tiii~sh~~ 171 (194)
T cd03213 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGL----------DSSSALQVMSLLRRLADT-GRTIICSIHQP 171 (194)
T ss_pred hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHHhC-CCEEEEEecCc
Confidence 0112333455666667789999999954432 223334455555554433 33445566654
No 486
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.06 E-value=8e-06 Score=83.77 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=28.4
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
++.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 24 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 24 SLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 35668899999999999999999999998864
No 487
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.06 E-value=2.4e-05 Score=90.85 Aligned_cols=122 Identities=14% Similarity=0.088 Sum_probs=83.9
Q ss_pred ceeeeecCCCCchhHHHHHHHHHhCC--eEEEEeCcchhhhccCcc--HHHHH--------HHHHHHhhCCCeEEEEccc
Q 003691 512 KGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGES--EANVR--------EIFDKARQSAPCVLFFDEL 579 (802)
Q Consensus 512 ~gill~GppGtGKT~lakala~~~~~--~~i~v~~~~l~~~~vg~s--e~~i~--------~lf~~a~~~~p~il~iDEi 579 (802)
.|+++.|+.|++||+++++++..+.. +|+.+...--....+|.. +..++ -++..|.. .|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 57999999999999999999999864 776654333333334432 11111 11222222 49999999
Q ss_pred chhhhccCCCCCCCCCchHHHHHHHHHHhhccC-----------CCCcEEEEEecCCC---CCCCccccCCCCcceEEEe
Q 003691 580 DSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----------AKKTVFIIGATNRP---DIIDPALLRPGRLDQLIYI 645 (802)
Q Consensus 580 d~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----------~~~~v~vi~aTn~~---~~ld~allr~gRf~~~i~~ 645 (802)
..+ ...+++.|++.|+... ...++++|++-|.. ..|.++++. ||+..|.+
T Consensus 103 n~~--------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 103 ERL--------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred ccC--------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 775 4678999999998531 12467888874432 348889998 99999999
Q ss_pred cCCCHHH
Q 003691 646 PLPDEAS 652 (802)
Q Consensus 646 ~~p~~~~ 652 (802)
+.|+..+
T Consensus 167 ~~~~~~~ 173 (584)
T PRK13406 167 DGLALRD 173 (584)
T ss_pred CCCChHH
Confidence 9887654
No 488
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.06 E-value=3.3e-06 Score=83.13 Aligned_cols=47 Identities=30% Similarity=0.543 Sum_probs=34.8
Q ss_pred hhhhhhccCCCCce--eeeecCCCCchhHHHHHHHHHhC--CeEEEEeCcc
Q 003691 500 PEKFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPE 546 (802)
Q Consensus 500 ~~~~~~~~~~~~~g--ill~GppGtGKT~lakala~~~~--~~~i~v~~~~ 546 (802)
.+.++.+++...+| +.++||+|||||||.|++...-. ...|.+++.+
T Consensus 15 ~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~ 65 (240)
T COG1126 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGED 65 (240)
T ss_pred eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEe
Confidence 34556666666666 99999999999999999987643 3457777643
No 489
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=6.3e-06 Score=90.68 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=28.2
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
++.+.+++.+.|.||+|||||||+++||+...
T Consensus 24 sl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~ 55 (356)
T PRK11650 24 DLDVADGEFIVLVGPSGCGKSTLLRMVAGLER 55 (356)
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 45567889999999999999999999999764
No 490
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.05 E-value=1e-05 Score=87.25 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=60.8
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCC-CCCcEEEEECCCCCcHHHHHHHHHHHhCC-------cEEEEec----h
Q 003691 205 DVGGVRKQMAQIRELVELPLRHPQLFKSIGV-KPPKGILLYGPPGSGKTLIARAVANETGA-------FFFLING----P 272 (802)
Q Consensus 205 ~i~G~~~~~~~l~~~v~~~l~~~~~~~~l~i-~~~~~vLL~GppGtGKTtLar~la~~l~~-------~~v~v~~----~ 272 (802)
++.|+++.++++.+.+.... .|. ...+.++|+|||||||||||++|++.++. +++.+.+ +
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 79999999999887775422 122 23467899999999999999999999976 6788877 5
Q ss_pred hhhhhccchhHHHHHHHHHHH
Q 003691 273 EIMSKLAGESESNLRKAFEEA 293 (802)
Q Consensus 273 ~l~~~~~g~~~~~l~~vf~~a 293 (802)
.+.....+-.....+..|.+.
T Consensus 124 p~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 124 PMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCccCCcccCCHHHHHHHHHH
Confidence 555555566667777777554
No 491
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.05 E-value=1e-05 Score=82.55 Aligned_cols=32 Identities=31% Similarity=0.340 Sum_probs=28.3
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
++.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45678899999999999999999999998753
No 492
>PRK06851 hypothetical protein; Provisional
Probab=98.04 E-value=0.00019 Score=78.39 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=26.8
Q ss_pred CceeeeecCCCCchhHHHHHHHHHh---CCeEEEEeCc
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGP 545 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~---~~~~i~v~~~ 545 (802)
.+-++|.|+||||||||++.++.++ |.......|+
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3459999999999999999999887 4444444443
No 493
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.03 E-value=2.7e-05 Score=76.68 Aligned_cols=109 Identities=15% Similarity=0.217 Sum_probs=62.9
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc-------------EEEEechhhhh----------hccc--hhHHHH
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------------FFLINGPEIMS----------KLAG--ESESNL 286 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-------------~v~v~~~~l~~----------~~~g--~~~~~l 286 (802)
++.+.+++.+.|.||+|||||||++++....+.. +.++...+.+. .... ...++-
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~q 94 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQ 94 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHH
Confidence 4567889999999999999999999996432221 11111111111 0011 123445
Q ss_pred HHHHHHHHhcC--CeEEEecccccccCCCCCCchhHHHHHHHHHHHhhhcccCCCcEEEEEecCCCC
Q 003691 287 RKAFEEAEKNA--PSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 351 (802)
Q Consensus 287 ~~vf~~a~~~~--p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~vivI~~tn~~~ 351 (802)
+..+..+.... |.++++||...- .+......+.+.+..+... ...||.+|+.++
T Consensus 95 rl~laral~~~~~p~llLlDEPt~~----------LD~~~~~~l~~~l~~~~~~-g~tvIivSH~~~ 150 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEPSTG----------LHQQDINQLLEVIKGLIDL-GNTVILIEHNLD 150 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 66677777778 999999995433 2233344455555544332 334555677654
No 494
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.03 E-value=1.2e-05 Score=76.84 Aligned_cols=112 Identities=21% Similarity=0.367 Sum_probs=70.6
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhhhh--------------------------------
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIMSK-------------------------------- 277 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~l~~~-------------------------------- 277 (802)
++.+..++.+.|.||+|+|||||...+|+-.-.. .+.+++.+....
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P 98 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSP 98 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCc
Confidence 4567889999999999999999999999865322 355555332110
Q ss_pred ---------------------------ccch--hHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHHH
Q 003691 278 ---------------------------LAGE--SESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQL 328 (802)
Q Consensus 278 ---------------------------~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 328 (802)
..++ ..++-|..+..+.-....|+++||- .+..+..+..++
T Consensus 99 ~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEP----------FsALdP~LR~eM 168 (231)
T COG3840 99 GLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEP----------FSALDPALRAEM 168 (231)
T ss_pred ccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCc----------hhhcCHHHHHHH
Confidence 0000 1223334444443334458999993 333344556677
Q ss_pred HHhhhcccCCCcEEEEEecCCCCCC
Q 003691 329 LTLMDGLKSRAHVIVMGATNRPNSI 353 (802)
Q Consensus 329 l~~ld~~~~~~~vivI~~tn~~~~l 353 (802)
+.++..+.......++..|+.++++
T Consensus 169 l~Lv~~l~~E~~~TllmVTH~~~Da 193 (231)
T COG3840 169 LALVSQLCDERKMTLLMVTHHPEDA 193 (231)
T ss_pred HHHHHHHHHhhCCEEEEEeCCHHHH
Confidence 7777777776677777788887654
No 495
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.03 E-value=8e-06 Score=87.43 Aligned_cols=114 Identities=21% Similarity=0.308 Sum_probs=70.1
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEechhhh--------------------------------hh
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLINGPEIM--------------------------------SK 277 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~~~l~--------------------------------~~ 277 (802)
++.+.+++-+.|.||+|+|||||+++|++.+... -+.++|.+.. ..
T Consensus 25 s~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~ 104 (293)
T COG1131 25 SFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFAR 104 (293)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHH
Confidence 3456788889999999999999999999987432 2333331110 00
Q ss_pred ccch------------------------------hHHHHHHHHHHHHhcCCeEEEecccccccCCCCCCchhHHHHHHHH
Q 003691 278 LAGE------------------------------SESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ 327 (802)
Q Consensus 278 ~~g~------------------------------~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 327 (802)
..+. ...+-+..+..+....|.++|+||-- ..++......
T Consensus 105 l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt----------~GLDp~~~~~ 174 (293)
T COG1131 105 LYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT----------SGLDPESRRE 174 (293)
T ss_pred HhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC----------cCCCHHHHHH
Confidence 0010 11122334445556689999999943 3333444455
Q ss_pred HHHhhhcccCCCcEEEEEecCCCCCCCH
Q 003691 328 LLTLMDGLKSRAHVIVMGATNRPNSIDP 355 (802)
Q Consensus 328 Ll~~ld~~~~~~~vivI~~tn~~~~ld~ 355 (802)
+..++..+....+..|+.+|+.++.+..
T Consensus 175 ~~~~l~~l~~~g~~tvlissH~l~e~~~ 202 (293)
T COG1131 175 IWELLRELAKEGGVTILLSTHILEEAEE 202 (293)
T ss_pred HHHHHHHHHhCCCcEEEEeCCcHHHHHH
Confidence 6666666666665677778887765543
No 496
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.03 E-value=2.8e-06 Score=80.95 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=31.9
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCcE--EEEech
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--FLINGP 272 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~--v~v~~~ 272 (802)
+|.+..+..+.+.|.+||||||||+.+++.+.... +.+|+.
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~ 75 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDH 75 (267)
T ss_pred EEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCc
Confidence 34567788999999999999999999999875432 444443
No 497
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.03 E-value=2.1e-05 Score=77.28 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=26.4
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANET 262 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 262 (802)
++.+..+.-..|.||+||||||++|++....
T Consensus 27 ~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 27 NLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred ceeccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 3456777889999999999999999998764
No 498
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.03 E-value=7.5e-06 Score=89.88 Aligned_cols=32 Identities=34% Similarity=0.515 Sum_probs=28.3
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhC
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 263 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 263 (802)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 26 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 26 NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 45667899999999999999999999999764
No 499
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.02 E-value=1.5e-05 Score=78.00 Aligned_cols=77 Identities=27% Similarity=0.357 Sum_probs=51.0
Q ss_pred hhCCCCCcEEEEECCCCCcHHHHHHHHHHHhCCc--EEEEec----------hhhh-----hh----cc--chhHHHHHH
Q 003691 232 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFLING----------PEIM-----SK----LA--GESESNLRK 288 (802)
Q Consensus 232 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~v~v~~----------~~l~-----~~----~~--g~~~~~l~~ 288 (802)
++.+.+++.+.|.||+|+|||||++++++.+... -+.+++ ..+. .. .. =...++-+.
T Consensus 21 ~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv 100 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRL 100 (166)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHH
Confidence 4567889999999999999999999999986421 122221 0000 00 00 112345566
Q ss_pred HHHHHHhcCCeEEEeccccc
Q 003691 289 AFEEAEKNAPSIIFIDELDS 308 (802)
Q Consensus 289 vf~~a~~~~p~il~iDEid~ 308 (802)
.+..+....|.++++||...
T Consensus 101 ~laral~~~p~~lllDEPt~ 120 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATS 120 (166)
T ss_pred HHHHHHHcCCCEEEEECCcc
Confidence 67777788999999999554
No 500
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.02 E-value=3.1e-05 Score=89.14 Aligned_cols=167 Identities=24% Similarity=0.304 Sum_probs=100.4
Q ss_pred CceeeeecCCCCchhHHHHHHHHHhC---CeEEEEeCcchhhhccCccHHHHHHHHHHH---------------hhCCCe
Q 003691 511 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFGESEANVREIFDKA---------------RQSAPC 572 (802)
Q Consensus 511 ~~gill~GppGtGKT~lakala~~~~---~~~i~v~~~~l~~~~vg~se~~i~~lf~~a---------------~~~~p~ 572 (802)
...+++.|++|||||++|+++..... .+|+.++|..+... ..-..+|... ......
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~------~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~G 234 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD------LIESELFGHEKGAFTGANTIRQGRFEQADGG 234 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH------HHHHHhcCCCCCCCCCCCcCCCCCeeECCCC
Confidence 34599999999999999999998864 68999999876321 1112222211 011234
Q ss_pred EEEEcccchhhhccCCCCCCCCCchHHHHHHHHHHhhccC-----C----CCcEEEEEecCCC-------CCCCccccCC
Q 003691 573 VLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMN-----A----KKTVFIIGATNRP-------DIIDPALLRP 636 (802)
Q Consensus 573 il~iDEid~l~~~r~~~~~~~~~~~~~vl~~lL~~ld~~~-----~----~~~v~vi~aTn~~-------~~ld~allr~ 636 (802)
.+|||||+.+. ..+...|+..++... + ..++-||+||+.. ..+.+.|..
T Consensus 235 tl~l~~i~~l~--------------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~- 299 (469)
T PRK10923 235 TLFLDEIGDMP--------------LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH- 299 (469)
T ss_pred EEEEeccccCC--------------HHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH-
Confidence 89999999974 345667777776432 1 1246788888764 134455555
Q ss_pred CCcc-eEEEecCCCH--HHHHHHHHHHhccC----CCCC-ccC---HHHHHHHccCCCHHHHHHHHHHHHHHHH
Q 003691 637 GRLD-QLIYIPLPDE--ASRLQIFKACLRKS----PISP-DVD---LSALARYTHGFSGADITEVCQRACKYAI 699 (802)
Q Consensus 637 gRf~-~~i~~~~p~~--~~r~~Il~~~l~~~----~~~~-~~~---~~~la~~t~g~sg~di~~~~~~a~~~a~ 699 (802)
||. ..|.+|+... ++...+++.++++. .... ... +..|..+.=--+-++|++++++|+..+-
T Consensus 300 -~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~ 372 (469)
T PRK10923 300 -RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAA 372 (469)
T ss_pred -HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 663 5666666533 34444555555332 1110 122 3344433222245899999999887654
Done!