Query 003691
Match_columns 802
No_of_seqs 529 out of 5124
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 17:59:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003691.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1741-1745//hhsearch_pdb/003691hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 1.0 1 1 1121.3 51.2 797 5-802 4-806 (806)
2 1ypw_A Transitional endoplasmi 1.0 1 1 908.5 37.0 794 8-802 7-806 (806)
3 3hu3_A Transitional endoplasmi 1.0 1 1 515.9 44.4 478 8-485 7-485 (489)
4 4b4t_J 26S protease regulatory 1.0 1 1 447.9 22.2 276 458-758 129-404 (405)
5 4b4t_I 26S protease regulatory 1.0 1 1 431.3 21.9 267 461-752 166-432 (437)
6 4b4t_L 26S protease subunit RP 1.0 1 1 430.2 25.1 273 460-757 164-436 (437)
7 4b4t_H 26S protease regulatory 1.0 1 1 426.3 22.9 268 467-759 199-467 (467)
8 4b4t_M 26S protease regulatory 1.0 1 1 425.5 25.7 265 460-749 164-428 (434)
9 4b4t_K 26S protease regulatory 1.0 1 1 421.9 22.3 265 466-755 161-427 (428)
10 3cf2_A TER ATPase, transitiona 1.0 1 1 388.9 21.2 294 471-777 198-502 (806)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=1121.31 Aligned_cols=797 Identities=77% Similarity=1.242 Sum_probs=726.9
Q ss_pred CCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCEEEECHHHHHHCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCEEE
Q ss_conf 98888886314664027999748980245799619997998796629999997999606876089999806877789399
Q 003691 5 NRKSSKKDYSTAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEASKVR 84 (802)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~l~~~~~~~l~l~~G~~v~i~~~~~~~~~~~~~~~~~~~~~~i~ 84 (802)
.-...+.+++|||+++++.|++|+|+++.++++++|+|+|+.|..|||.+||+|.|+|.+++.+++|++++.+++.+.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i~ 83 (806)
T 3cf2_A 4 GADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIR 83 (806)
T ss_dssp -----------------CCTTEEECBCCSSCCTTEEEECHHHHHHTTCCSSCEEEEECGGGCBCCEEEEECTTSBTTBCE
T ss_pred CCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCEEEECHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCEEE
T ss_conf 76778887016666336898448973677887898997899998769999998999807975599998488888899799
Q ss_pred ECHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEE
Q ss_conf 71876731233579838998379999874698435777556766356999956865203865236969999327514999
Q 003691 85 VNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEF 164 (802)
Q Consensus 85 ~~~~~r~~~~~~~~~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f 164 (802)
|++.+|.|+|+.+||.|+|++++.++.+.+|++.|...+.....+..+..+++.||....+||..|+.|.+..++..+.|
T Consensus 84 ~~~~~r~n~~v~~gd~V~v~~~~~~~~a~~v~l~p~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f 163 (806)
T 3cf2_A 84 MNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEF 163 (806)
T ss_dssp ECHHHHHTTTCCTTCEEEEEECCCCCBCSBEEEEEBTTTSTTCCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEE
T ss_pred ECHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEECCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEE
T ss_conf 68999976699997989999899988677899934640021033457999999998756872467998999438857989
Q ss_pred EEEEECCCCEEEECCCCEEEECCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEE
Q ss_conf 999955895176589960885588875211-0113777744565829999999999875346935675409999817999
Q 003691 165 KVIETDPGEYCVVAPDTEIFCEGEPVKRED-EERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL 243 (802)
Q Consensus 165 ~v~~~~p~~~~~i~~~t~i~~~~~~~~~~~-~~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~iLL 243 (802)
+|++++|.++++++++|.|.+.+.+..... ....++++|+||+|++++++.|++++.+|+.+|++|..+++.+|+||||
T Consensus 164 ~V~~~~P~~~~~v~~~T~i~~~~~~~~~~~~~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL 243 (806)
T 3cf2_A 164 KVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILL 243 (806)
T ss_dssp EEEEESSSSEEECCTTSBCCBCSCCBCCCTTSCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEE
T ss_pred EEEEEECCCCEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEE
T ss_conf 99998579876988983799926666766533458999903514999999999999998751989886358999975897
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf 88999918999999999919928999322554201340189999999999943993999643210047777871268899
Q 003691 244 YGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERR 323 (802)
Q Consensus 244 ~Gp~GtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 323 (802)
|||||||||+|++++|++++.+++.++|+++.+++.|+++..++.+|+.|..+.|+||||||+|.++++++...++.+++
T Consensus 244 ~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~r 323 (806)
T 3cf2_A 244 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERR 323 (806)
T ss_dssp ECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHH
T ss_pred ECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCCCHHHHH
T ss_conf 79899988999999999719839999737954333167899999999999972992999851002334457788739999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
Q ss_conf 99999985311247870999994499999997745159963499927999889999999985268653211058897630
Q 003691 324 IVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDT 403 (802)
Q Consensus 324 i~~~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t 403 (802)
++++|+++|+++..+..|+||++||+++.+|++++|+|||+++|+++.|+..+|.+||+.+++++.+..++++..+|..|
T Consensus 324 iv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T 403 (806)
T 3cf2_A 324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANET 403 (806)
T ss_dssp HHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHC
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCHHHCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHC
T ss_conf 99999999746666698799996698032698885786361688668979899999999985689988643899999756
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 79955799999999999968750223354320114876310012101111001368887641011014664312224530
Q 003691 404 HGYVGSDLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLD 483 (802)
Q Consensus 404 ~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~ 483 (802)
+||+++||..+|++|.+.++++..+.+.........+......++.+||..++..+.|+.+++...+.|+++|++++|++
T Consensus 404 ~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~ 483 (806)
T 3cf2_A 404 HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLE 483 (806)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHH
T ss_conf 89989999999999999999841451200013320455225565199999999728783112344457887888817889
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHHCCCCCHHHHHHHH
Q ss_conf 23445343402767791445420678884034355999842499999999919908999482101101275278899999
Q 003691 484 NVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIF 563 (802)
Q Consensus 484 ~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~vg~s~~~i~~if 563 (802)
++|+.|.+.+.||+++++.|.+++..+++|+|||||||||||++|+++|++++.+|+.+++++++++|+|+++++++.+|
T Consensus 484 ~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF 563 (806)
T 3cf2_A 484 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563 (806)
T ss_dssp HHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHHCCCCCHHHHHHHHHH
T ss_conf 99999999997566689999714888886079866877896399999999838966874241121033436899999999
Q ss_pred HHHHHCCCEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99762899699991521232105999899998437999999998624589984999983589998994445999763189
Q 003691 564 DKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLI 643 (802)
Q Consensus 564 ~~a~~~~p~ii~iDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i 643 (802)
+.|+...||||||||||++++.|+...++.++..++++++||++|||+....+|+||+|||+|+.||+|++||||||+.|
T Consensus 564 ~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i 643 (806)
T 3cf2_A 564 DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643 (806)
T ss_dssp HHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEE
T ss_pred HHHHHCCCCEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCHHHCCCCCCEEEE
T ss_conf 99997299635204256776315888889866999999999999748787799899993798043898471778550799
Q ss_pred EECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 80699999999999997302999996678999998148999999999999999999998788699998520797433334
Q 003691 644 YIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAMEED 723 (802)
Q Consensus 644 ~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~i~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (802)
||++|+.++|.+||+.++++.++..++|+..||+.|+||||+||.++|++|++.|+++.++...............+...
T Consensus 644 ~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~ 723 (806)
T 3cf2_A 644 YIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVE 723 (806)
T ss_dssp EC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-------------------
T ss_pred EECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 97996999999999998567999877899999976899999999999999999999999985644433301574100123
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCC
Q ss_conf 65653433488899998433899999999999999999810148897644563110001599997788-----7889978
Q 003691 724 EVDDVDEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFADRTESAAAGAADPFSS-----AAAADDD 798 (802)
Q Consensus 724 ~~~~~~~i~~~~f~~al~~~~~s~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 798 (802)
..+..+.|+++||+.|++.++||++.+++++|++|.++|+++|+||+ ++|+..+...+.....+-+. ....+||
T Consensus 724 ~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (806)
T 3cf2_A 724 EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSGNQGGAGPSQGSGGGTGGSVYTEDNDD 802 (806)
T ss_dssp ----CCC----CCTTTC---------------CCCC--------------------------------------------
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 34566864799999999867999999999999999999725367665-20688776777877788876544556778766
Q ss_pred CCCC
Q ss_conf 7679
Q 003691 799 DLYN 802 (802)
Q Consensus 799 ~~~~ 802 (802)
|||.
T Consensus 803 ~~~~ 806 (806)
T 3cf2_A 803 DLYG 806 (806)
T ss_dssp ----
T ss_pred CCCC
T ss_conf 6659
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=908.45 Aligned_cols=794 Identities=78% Similarity=1.247 Sum_probs=703.7
Q ss_pred CCCCCCCHHHHHCCCCCCEEEEECCCCCCCCEEEECHHHHHHCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCEEEECH
Q ss_conf 88886314664027999748980245799619997998796629999997999606876089999806877789399718
Q 003691 8 SSKKDYSTAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEASKVRVNK 87 (802)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~l~~~~~~~l~l~~G~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 87 (802)
+.++++.+||+++++.|++|+|+++.+++.++|+|+|+.|.+|||..||+|.|+|++++.+++.+|+...++.+.|+|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (806)
T 1ypw_A 7 SKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNR 86 (806)
T ss_dssp ----------CCCCCCTTEEEEECCSSCCSSCEEECHHHHHHHTCCTTCEEEEEETTTEECCEEEEECSSSCTTEEECCH
T ss_pred CCCCCCCHHHHHCCCCCCEEEECCCCCCCCCEEEECHHHHHHCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCEEEECH
T ss_conf 45664104677425788458972676776887988899999759999988999368657379999647888998699648
Q ss_pred HHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEEE
Q ss_conf 76731233579838998379999874698435777556766356999956865203865236969999327514999999
Q 003691 88 VVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVI 167 (802)
Q Consensus 88 ~~r~~~~~~~~~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~ 167 (802)
.+|.|+|+.+||.|+|+++..++.+.+|++.|...++..+.+.++..+++++|...++||.+|+.+.+..++..+.|+|+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~ 166 (806)
T 1ypw_A 87 VVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVV 166 (806)
T ss_dssp HHHTTTTCCTTCEEEEEECTTCCBCSEEEEEECTTTSSSCCSCCTTTTTGGGTTTTCCBCCTTCEEEECCSSSCEEEEEE
T ss_pred HHHHHCCCCCCCEEEEEECCCCCCCCEEEEECCCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCEEEEEE
T ss_conf 99966398889989999887787576899807865222115506789999986007832268987995478760577887
Q ss_pred EECCCCEEEECCCCEEEECCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEECC
Q ss_conf 955895176589960885588875211-0113777744565829999999999875346935675409999817999889
Q 003691 168 ETDPGEYCVVAPDTEIFCEGEPVKRED-EERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGP 246 (802)
Q Consensus 168 ~~~p~~~~~i~~~t~i~~~~~~~~~~~-~~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~iLL~Gp 246 (802)
+++|.++++++++|.+.+...+..... .+..++++|++|+|++.+++.+++++.+++.+|++|.++++.++.++||+||
T Consensus 167 ~~~p~~~~~v~~~t~~~~~~~~~~~~~~~~~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp 246 (806)
T 1ypw_A 167 ETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGP 246 (806)
T ss_dssp EETTTTCCBCCSSSEEEECSCCCCCCTTSCCSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSC
T ss_pred ECCCCCCCEECCCEEEEECCCCCCCHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECC
T ss_conf 33688873326886998558655411221135789988828809999999999998742989998638899973899893
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99918999999999919928999322554201340189999999999943993999643210047777871268899999
Q 003691 247 PGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVS 326 (802)
Q Consensus 247 ~GtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~i~~ 326 (802)
||||||+++++++++++..++.++|.++.+.+.++.+..++.+|+.+..+.|+++|+||+|+++++++...++...++..
T Consensus 247 ~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ 326 (806)
T 1ypw_A 247 PGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVS 326 (806)
T ss_dssp TTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99987999999999719968999755765441015899999999999864995798300777511146663168899999
Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 99985311247870999994499999997745159963499927999889999999985268653211058897630799
Q 003691 327 QLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGY 406 (802)
Q Consensus 327 ~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~ 406 (802)
+|+.++++...+..++++++||+++.+++++++++||+..+.++.|+.++|.+|++.+.+++.+..+.++..++..++||
T Consensus 327 ~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~ 406 (806)
T 1ypw_A 327 QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406 (806)
T ss_dssp HHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSC
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
T ss_conf 99998654114661787602398100499986465544435569999999999999987338776220067777761475
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHH
Q ss_conf 55799999999999968750223354320114876310012101111001368887641011014664312224530234
Q 003691 407 VGSDLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLDNVK 486 (802)
Q Consensus 407 ~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~~k 486 (802)
+++++..++.++...++++...........+.........++..++..++....|+..++...+.+.+.|++++|++.++
T Consensus 407 ~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk 486 (806)
T 1ypw_A 407 VGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVK 486 (806)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 36899999999999987642010115542010124445555566531111235714442000257542111124430222
Q ss_pred HHHHHHHCCCCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHHCCCCCHHHHHHHHHHH
Q ss_conf 45343402767791445420678884034355999842499999999919908999482101101275278899999997
Q 003691 487 RELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 566 (802)
Q Consensus 487 ~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~~vg~s~~~i~~if~~a 566 (802)
+.+.+.+.++..+++.+..+++.++.++||+||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|+.+
T Consensus 487 ~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a 566 (806)
T 1ypw_A 487 RELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 (806)
T ss_dssp HHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 21899997555363989754888775368977999878999999999848987998616765530575478899999998
Q ss_pred HHCCCEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 62899699991521232105999899998437999999998624589984999983589998994445999763189806
Q 003691 567 RQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIP 646 (802)
Q Consensus 567 ~~~~p~ii~iDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~atn~~~~ld~allrpgRf~~~i~~~ 646 (802)
+...|||+||||||++...|+....+......+++++||++||++....+++||+|||+|+.||+|++|||||+..|+|+
T Consensus 567 ~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~ 646 (806)
T 1ypw_A 567 RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 646 (806)
T ss_dssp HHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCC
T ss_pred HHCCCEEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 70698599998744542112687777641689999999998754566687699984387122798783765567305559
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999999997302999996678999998148999999999999999999998788699998520797433334656
Q 003691 647 LPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERERRKMENPEAMEEDEVD 726 (802)
Q Consensus 647 ~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~i~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (802)
+|+.++|.+||+.++++.++..++++..+++.+.||||+||.++|++|.+.|+++.++...............+.....+
T Consensus 647 ~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (806)
T 1ypw_A 647 LPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDD 726 (806)
T ss_dssp CCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC------------------------
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 97999999999998645999752279999973500599999999999999999999998776654301464312334346
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCC-CCCC---CCCCCCCCCC
Q ss_conf 53433488899998433899999999999999999810148897644563110-00159999-7788---7889978767
Q 003691 727 DVDEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFADRTE-SAAAGAAD-PFSS---AAAADDDDLY 801 (802)
Q Consensus 727 ~~~~i~~~~f~~al~~~~~s~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~---~~~~~~~~~~ 801 (802)
....|+.+||+.|++.++||++.++++.|++|.++|+++|+|++ +.|...-. +..|+++. +=.. ..-.||||||
T Consensus 727 ~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (806)
T 1ypw_A 727 PVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSGNQGGAGPSQGSGGGTGGSVYTEDNDDDLY 805 (806)
T ss_dssp CCTTTTTTSSCCCCCC----------------------------------------------------------------
T ss_pred CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC-EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
T ss_conf 66760799999999867899999999999999999976325776-10687666567788999998888777766421201
Q ss_pred C
Q ss_conf 9
Q 003691 802 N 802 (802)
Q Consensus 802 ~ 802 (802)
|
T Consensus 806 ~ 806 (806)
T 1ypw_A 806 G 806 (806)
T ss_dssp -
T ss_pred C
T ss_conf 9
No 3
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=1.00 E-value=1 Score=515.88 Aligned_cols=478 Identities=79% Similarity=1.271 Sum_probs=437.4
Q ss_pred CCCCCCCHHHHHCCCCCCEEEEECCCCCCCCEEEECHHHHHHCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCEEEECH
Q ss_conf 88886314664027999748980245799619997998796629999997999606876089999806877789399718
Q 003691 8 SSKKDYSTAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEASKVRVNK 87 (802)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~l~~~~~~~l~l~~G~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 87 (802)
..+++++|||+++++.||+|+|+++.++++++|+|+|+.|..||+..||+|.|+|++++.+++|+||...++++.|+|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~~~g~~~~~~~~~~~~~~~~~~~~i~~~~ 86 (489)
T 3hu3_A 7 SKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNR 86 (489)
T ss_dssp ----------CCCCCCTTEEEEECCTTCCTTEEEECHHHHHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEECCH
T ss_pred CCCCCCCHHHHHCCCCCCEEEECCCCCCCCCEEEECHHHHHHCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCEEEECH
T ss_conf 12565111445425688725975677776878998999999769999998999268667379999507878999799568
Q ss_pred HHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEEE
Q ss_conf 76731233579838998379999874698435777556766356999956865203865236969999327514999999
Q 003691 88 VVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVI 167 (802)
Q Consensus 88 ~~r~~~~~~~~~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~ 167 (802)
.+|.|+|+++||+|+|+++..++.+.+|++.|+...+.......++.+.+++.....+++..|+.+.+.+.++.+.|+++
T Consensus 87 ~~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~~~~~av~a~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (489)
T 3hu3_A 87 VVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVV 166 (489)
T ss_dssp HHHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBGGGSSSCCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEEEEE
T ss_pred HHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEE
T ss_conf 99965398899989999888887467899837986523245305788867877405842036888996578846879998
Q ss_pred EECCCCEEEECCCCEEEECCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEECC
Q ss_conf 955895176589960885588875211-0113777744565829999999999875346935675409999817999889
Q 003691 168 ETDPGEYCVVAPDTEIFCEGEPVKRED-EERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGP 246 (802)
Q Consensus 168 ~~~p~~~~~i~~~t~i~~~~~~~~~~~-~~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~iLL~Gp 246 (802)
..+|..++.++++|.+.+.+.+..... .+...+++|++++|++.+++.+++++..++.+|++|..++..++.++||+||
T Consensus 167 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~Gp 246 (489)
T 3hu3_A 167 ETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGP 246 (489)
T ss_dssp EEESSSEEEECTTCEEECCSSCBCHHHHHHHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECS
T ss_pred EECCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECC
T ss_conf 41378866976881899736765544433345789988808979999999999998855989998649999975899996
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99918999999999919928999322554201340189999999999943993999643210047777871268899999
Q 003691 247 PGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVS 326 (802)
Q Consensus 247 ~GtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~i~~ 326 (802)
||||||+++++++..++.+++.++|+++.+.+.|+....++.+|..+....|++|||||+|.+.++++...++...++..
T Consensus 247 pGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~ 326 (489)
T 3hu3_A 247 PGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVS 326 (489)
T ss_dssp TTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCHHHHHHHH
T ss_conf 99899999999999869988999745765442132678999999999963990899646555234554454257899999
Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 99985311247870999994499999997745159963499927999889999999985268653211058897630799
Q 003691 327 QLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGY 406 (802)
Q Consensus 327 ~Ll~~ld~~~~~~~vivi~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~ 406 (802)
+|+..|++......+++|++||+++.+++++++++||+..++++.|+..+|.+||+.+++...+..+.++..++..+.||
T Consensus 327 ~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~ 406 (489)
T 3hu3_A 327 QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406 (489)
T ss_dssp HHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTC
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
T ss_conf 99987531246786699985488322698782777674699827979999999999998418986213399999975697
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHH
Q ss_conf 5579999999999996875022335432011487631001210111100136888764101101466431222453023
Q 003691 407 VGSDLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLDNV 485 (802)
Q Consensus 407 ~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~~ 485 (802)
+++|+..+|++|...+.++....++.+.............++.+||..+++.++|+.+++..++.|+++|+||||....
T Consensus 407 s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~~ 485 (489)
T 3hu3_A 407 VGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSHH 485 (489)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC----------------
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHCCCCCCC
T ss_conf 6999999999999999973023355320125523304676789999999976774241013431799889771897655
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=447.87 Aligned_cols=276 Identities=39% Similarity=0.688 Sum_probs=252.9
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 68887641011014664312224530234453434027677914454206788840343559998424999999999199
Q 003691 458 TSNPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (802)
Q Consensus 458 ~~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~ 537 (802)
...|........+.|+++|+||+|++++|+.|++.+.||+++|+.|.++|+.+++|+|||||||||||++|+++|++++.
T Consensus 129 ~~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~ 208 (405)
T 4b4t_J 129 KADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC 208 (405)
T ss_dssp CCSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC
T ss_pred CCCCHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 65846661355579999888828889999999999999874999998679998882588589999878999999985188
Q ss_pred EEEEEECCCHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 08999482101101275278899999997628996999915212321059998999984379999999986245899849
Q 003691 538 NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTV 617 (802)
Q Consensus 538 ~~i~v~~~~l~~~~vg~s~~~i~~if~~a~~~~p~ii~iDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v 617 (802)
+|+.++++++.++|+|++++.++.+|..|+...||||||||||++++.|..+.++.+....+++++||++|||+....++
T Consensus 209 ~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 288 (405)
T 4b4t_J 209 KFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI 288 (405)
T ss_dssp EEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCE
T ss_pred CCEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 85288868951133546899999999999870994676533411115778889997689999999999960433888875
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99983589998994445999763189806999999999999973029999966789999981489999999999999999
Q 003691 618 FIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKY 697 (802)
Q Consensus 618 ~vi~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~i~~~a~~~ 697 (802)
+||+|||+|+.||||++||||||+.|+|++|+.++|.+||+.+++++++..++|+..+|+.|+||||+||.++|++|++.
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~ 368 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMY 368 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 78812698144899672877676699769969999999999985599999657999999877999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9999878869999852079743333465653433488899998433899999999999999
Q 003691 698 AIRENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSVSDADIRKYQLF 758 (802)
Q Consensus 698 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~s~~~~~~~~y~~~ 758 (802)
|+++. ...|+++||+.|++++.++.....+..++.|
T Consensus 369 Air~~-------------------------~~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~ 404 (405)
T 4b4t_J 369 ALRER-------------------------RIHVTQEDFELAVGKVMNKNQETAISVAKLF 404 (405)
T ss_dssp HHHTT-------------------------CSBCCHHHHHHHHHHHHHHHTCC--------
T ss_pred HHHCC-------------------------CCCCCHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99869-------------------------9875999999999998572655540267641
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=431.32 Aligned_cols=267 Identities=36% Similarity=0.648 Sum_probs=246.6
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEE
Q ss_conf 87641011014664312224530234453434027677914454206788840343559998424999999999199089
Q 003691 461 PSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540 (802)
Q Consensus 461 ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~i 540 (802)
|........+.|+++|+||+|++++|+.|++.+.+|+.+++.|..+++.+++|+|||||||||||++|+++|++++.+|+
T Consensus 166 ~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi 245 (437)
T 4b4t_I 166 PMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL 245 (437)
T ss_dssp CCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 74525543368998600557699999999999999876999998679997778844889996399999999998599879
Q ss_pred EEECCCHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 99482101101275278899999997628996999915212321059998999984379999999986245899849999
Q 003691 541 SVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFII 620 (802)
Q Consensus 541 ~v~~~~l~~~~vg~s~~~i~~if~~a~~~~p~ii~iDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi 620 (802)
.++++++.++|+|++++.++.+|..|+...||||||||+|+++..|..+....+....+++++||++||++....+++||
T Consensus 246 ~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVI 325 (437)
T 4b4t_I 246 RIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVI 325 (437)
T ss_dssp EEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEE
T ss_pred EEEHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 98879953144766999999999999865991898761222036677888776589999999999972476788997999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 83589998994445999763189806999999999999973029999966789999981489999999999999999999
Q 003691 621 GATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIR 700 (802)
Q Consensus 621 ~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~i~~~a~~~a~~ 700 (802)
+|||+|+.||||++||||||+.|+|++||.++|.+||+.+++++++..++|+..+|..|+|||||||.++|++|++.|++
T Consensus 326 aATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air 405 (437)
T 4b4t_I 326 MATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALR 405 (437)
T ss_dssp EEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCHHHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 95798055599886488602799808969999999999996489999767999999767999899999999999999998
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHH
Q ss_conf 9878869999852079743333465653433488899998433899999999
Q 003691 701 ENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSVSDADI 752 (802)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~s~~~~~~ 752 (802)
+. ...|+++||+.|++.+.|+.+.+.+
T Consensus 406 ~~-------------------------~~~It~eDf~~Al~rv~~~~~~e~l 432 (437)
T 4b4t_I 406 ER-------------------------RMQVTAEDFKQAKERVMKNKVEENL 432 (437)
T ss_dssp TT-------------------------CSCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred CC-------------------------CCCCCHHHHHHHHHHHHCCCCHHHH
T ss_conf 48-------------------------9966999999999987079873347
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=430.20 Aligned_cols=273 Identities=41% Similarity=0.681 Sum_probs=251.8
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEE
Q ss_conf 88764101101466431222453023445343402767791445420678884034355999842499999999919908
Q 003691 460 NPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (802)
Q Consensus 460 ~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~ 539 (802)
.|........+.|+++|+||+|++++++.|++.+.+|+.+++.|.++|+.+++|+|||||||||||++|+++|++++.+|
T Consensus 164 d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~ 243 (437)
T 4b4t_L 164 DPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF 243 (437)
T ss_dssp CCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred CCHHHEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 74233013315999896671785999999999999987499999867989787699989999849999999999859998
Q ss_pred EEEECCCHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 99948210110127527889999999762899699991521232105999899998437999999998624589984999
Q 003691 540 ISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFI 619 (802)
Q Consensus 540 i~v~~~~l~~~~vg~s~~~i~~if~~a~~~~p~ii~iDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~v 619 (802)
+.++++++.++|+|++++.++.+|..|+...||||||||+|++++.|...+...+....+++++||++|||+....+++|
T Consensus 244 ~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~viv 323 (437)
T 4b4t_L 244 IFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKI 323 (437)
T ss_dssp EEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEE
T ss_pred EEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 99841462055201789999999999986389646420443333333447887536899999999998346667798699
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 98358999899444599976318980699999999999997302999996678999998148999999999999999999
Q 003691 620 IGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAI 699 (802)
Q Consensus 620 i~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~i~~~a~~~a~ 699 (802)
|+|||+|+.||||++||||||+.|+|++||.++|.+||+.+++++++..++|+..+|+.|+||||+||.++|++|++.|+
T Consensus 324 I~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~ai 403 (437)
T 4b4t_L 324 IMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAI 403 (437)
T ss_dssp EEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99339903318978277710200135996999999999998658999864589999976899999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 9987886999985207974333346565343348889999843389999999999999
Q 003691 700 RENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSVSDADIRKYQL 757 (802)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~s~~~~~~~~y~~ 757 (802)
++. ...|+.+||+.|++.+.|+...+....|++
T Consensus 404 r~~-------------------------~~~i~~~d~~~Al~~v~~~~k~e~~~e~~K 436 (437)
T 4b4t_L 404 RDD-------------------------RDHINPDDLMKAVRKVAEVKKLEGTIEYQK 436 (437)
T ss_dssp HTT-------------------------CSSBCHHHHHHHHHHHHHTCC---------
T ss_pred HCC-------------------------CCCCCHHHHHHHHHHHHHCCCCCCCHHHHC
T ss_conf 869-------------------------987799999999999875037012356425
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=426.28 Aligned_cols=268 Identities=34% Similarity=0.656 Sum_probs=245.4
Q ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf 11014664312224530234453434027677914454206788840343559998424999999999199089994821
Q 003691 467 TVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 546 (802)
Q Consensus 467 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~i~v~~~~ 546 (802)
...+.|+++|+||+|++++|+.|++.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 199 ~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~ 278 (467)
T 4b4t_H 199 TVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSE 278 (467)
T ss_dssp EEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred EECCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHH
T ss_conf 01579999878854599999999999998842999998779999981476489998099999999844689869988699
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 01101275278899999997628996999915212321059998999984379999999986245899849999835899
Q 003691 547 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRP 626 (802)
Q Consensus 547 l~~~~vg~s~~~i~~if~~a~~~~p~ii~iDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~atn~~ 626 (802)
+.++|+|++++.++.+|..|+...||||||||+|.++..|+....+......++++++|++||+.....+++||+|||+|
T Consensus 279 L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrp 358 (467)
T 4b4t_H 279 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRP 358 (467)
T ss_dssp GCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 50266778999999999998761784675223211013556767786278999999999986555788837988287893
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98994445999763189806999999999999973029999966789999981489999999999999999999987886
Q 003691 627 DIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKD 706 (802)
Q Consensus 627 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~i~~~a~~~a~~~~~~~~ 706 (802)
+.||||++||||||+.|+|++|+.++|.+||+.+++++++..++++..+|+.|+||||+||.++|++|++.|+++.
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~---- 434 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR---- 434 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred CCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----
T ss_conf 1179546366655079983896999999999998548999877799999977799999999999999999999838----
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q ss_conf 999985207974333346565343348889999843389999-99999999999
Q 003691 707 IERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSVS-DADIRKYQLFA 759 (802)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~s~~-~~~~~~y~~~~ 759 (802)
...|+.+||+.|++.+.++.. .....+|.+|.
T Consensus 435 ---------------------~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 435 ---------------------RKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp ---------------------CSSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred ---------------------CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHC
T ss_conf ---------------------876699999999999964745612578998619
No 8
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=425.50 Aligned_cols=265 Identities=38% Similarity=0.643 Sum_probs=245.3
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEE
Q ss_conf 88764101101466431222453023445343402767791445420678884034355999842499999999919908
Q 003691 460 NPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (802)
Q Consensus 460 ~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~ 539 (802)
.|........+.|+++|+||+|++++|+.|++.+.+|+.+++.|.++|+.+++|+|||||||||||++|+++|++++.+|
T Consensus 164 d~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f 243 (434)
T 4b4t_M 164 DSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF 243 (434)
T ss_dssp SCSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred CCHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 73134326688979986760957999999999999997499999867999887268779499988999999999959988
Q ss_pred EEEECCCHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 99948210110127527889999999762899699991521232105999899998437999999998624589984999
Q 003691 540 ISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFI 619 (802)
Q Consensus 540 i~v~~~~l~~~~vg~s~~~i~~if~~a~~~~p~ii~iDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~v 619 (802)
+.++++++.++|+|++++.++.+|..|+...||||||||+|++++.|..+..+......+++++||++|||+.+..+++|
T Consensus 244 ~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViV 323 (434)
T 4b4t_M 244 LKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKV 323 (434)
T ss_dssp EEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEE
T ss_pred EEEEHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 99864464313456389999999999986199089603325665225778888746999999999997136688899899
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 98358999899444599976318980699999999999997302999996678999998148999999999999999999
Q 003691 620 IGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAI 699 (802)
Q Consensus 620 i~atn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~i~~~a~~~a~ 699 (802)
|+|||+|+.||||++||||||+.|+|++|+.++|.+||+.+++++++..++++..+|+.|+||||+||.++|++|++.|+
T Consensus 324 IaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~ 403 (434)
T 4b4t_M 324 LAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIAL 403 (434)
T ss_dssp EEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99489922339967157740389980895999999999998568999876799999986899899999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCH
Q ss_conf 99878869999852079743333465653433488899998433899999
Q 003691 700 RENIEKDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSVSD 749 (802)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~s~~~ 749 (802)
++. ...|+.+||..|++.++|+.+.
T Consensus 404 r~~-------------------------~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 404 RNG-------------------------QSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp HHT-------------------------CSSBCHHHHHHHHHSCSSSCCC
T ss_pred HCC-------------------------CCCCCHHHHHHHHHHHHCCCCC
T ss_conf 869-------------------------9876999999999997377775
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=421.86 Aligned_cols=265 Identities=40% Similarity=0.664 Sum_probs=245.3
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEECC
Q ss_conf 01101466431222453023445343402767791445420678884034355999842499999999919908999482
Q 003691 466 ETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 545 (802)
Q Consensus 466 ~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~i~v~~~ 545 (802)
....+.|+++|+||+|++++|+.|++.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.++++
T Consensus 161 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 161 MGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 26778999988885169999999999999987399999867999886588889899888999999999867996999330
Q ss_pred CHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 10110127527889999999762899699991521232105999899998437999999998624589984999983589
Q 003691 546 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNR 625 (802)
Q Consensus 546 ~l~~~~vg~s~~~i~~if~~a~~~~p~ii~iDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~atn~ 625 (802)
++.++|+|++++.++.+|..|+...|||+||||+|+++..|.......+....+++++||++|||+....+++||+|||+
T Consensus 241 ~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~ 320 (428)
T 4b4t_K 241 EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNR 320 (428)
T ss_dssp GTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 44314546059999999999997399746300224330355678788871899999999998438787799799996198
Q ss_pred CCCCCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998994445999763189806-9999999999999730299999667899999814899999999999999999999878
Q 003691 626 PDIIDPALLRPGRLDQLIYIP-LPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIE 704 (802)
Q Consensus 626 ~~~ld~allrpgRf~~~i~~~-~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~i~~~a~~~a~~~~~~ 704 (802)
|+.||||++||||||+.|+|| +|+.++|..||+.+++++++..++|+..+|..|+|||||||.++|++|++.|+++.
T Consensus 321 ~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~-- 398 (428)
T 4b4t_K 321 ADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-- 398 (428)
T ss_dssp SSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC--
T ss_conf 155696663687515999819999999999999998557999963589999977799889999999999999999879--
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCCHHHHHHH
Q ss_conf 86999985207974333346565343348889999843-3899999999999
Q 003691 705 KDIERERRKMENPEAMEEDEVDDVDEIKAVHFEESMKY-ARRSVSDADIRKY 755 (802)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~-~~~s~~~~~~~~y 755 (802)
...|+++||+.|+.. ++++.+.+++++|
T Consensus 399 -----------------------~~~i~~~d~~~A~~~~~~~~~~~~~~d~y 427 (428)
T 4b4t_K 399 -----------------------RYVILQSDLEEAYATQVKTDNTVDKFDFY 427 (428)
T ss_dssp -----------------------CSSBCHHHHHHHHHHHSCSCCCSSCCCSC
T ss_pred -----------------------CCCCCHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf -----------------------98779999999999761766895475541
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=388.94 Aligned_cols=294 Identities=37% Similarity=0.652 Sum_probs=256.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHH
Q ss_conf 46643122245302344534340276779144542067888403435599984249999999991990899948210110
Q 003691 471 VPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 550 (802)
Q Consensus 471 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~i~v~~~~l~~~ 550 (802)
.|.++|+||+|++++++.|++.+.+|+++++.|..++..+|+|+|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHCC
T ss_conf 89999035149999999999999987519898863589999758977989998899999999971983999973795433
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
Q ss_conf 12752788999999976289969999152123210599989999843799999999862458998499998358999899
Q 003691 551 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIID 630 (802)
Q Consensus 551 ~vg~s~~~i~~if~~a~~~~p~ii~iDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~atn~~~~ld 630 (802)
|+|++++.++.+|+.|+...||||||||||.+++.|+... +....+++++||.+||++....+++||++||+|+.||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~---~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC---CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCC---CHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCC
T ss_conf 3167899999999999972992999851002334457788---7399999999999974666669879999669803269
Q ss_pred CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44459997631898069999999999999730299999667899999814899999999999999999999878869999
Q 003691 631 PALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIERE 710 (802)
Q Consensus 631 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~i~~~a~~~a~~~~~~~~~~~~ 710 (802)
+|++|||||++.|++++|+.++|.+||+.+++++++..++++..+|..|.||+|+||.++|++|++.|+++.......
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~-- 432 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL-- 432 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG--
T ss_pred HHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC--
T ss_conf 888578636168866897989999999998568998864389999975689989999999999999999841451200--
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 852079743333465653433488899998433899-----------9999999999999998101488976445631
Q 003691 711 RRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRS-----------VSDADIRKYQLFAQTLQQSRGFGSEFRFADR 777 (802)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~~s-----------~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 777 (802)
..... .........|+++||..|+..++|+ ++.+++-.++...+.+...-.| ++.+++.
T Consensus 433 -----~~~~~-~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~--p~~~p~~ 502 (806)
T 3cf2_A 433 -----EDETI-DAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQY--PVEHPDK 502 (806)
T ss_dssp -----TCCCC-SHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTT--TTTCSGG
T ss_pred -----CCCCC-CHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHH--HHHCHHH
T ss_conf -----01332-0455225565199999999728783112344457887888817889999999999975--6668999
Done!