Query 003692
Match_columns 802
No_of_seqs 281 out of 3013
Neff 9.7
Searched_HMMs 29240
Date Tue Mar 26 18:19:03 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003692.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1741-1745//hhsearch_pdb/003692hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s5m_A Falcilysin; M16 metallo 1.0 1 1 878.4 70.9 787 1-791 99-1182(1193)
2 2fge_A Atprep2;, zinc metallop 1.0 1 1 784.0 80.2 785 2-792 51-988 (995)
3 3cww_A Insulysin, insulin-degr 1.0 1 1 577.6 45.6 719 11-786 62-937 (990)
4 1q2l_A Protease III; hydrolase 1.0 1 1 555.0 49.3 719 10-786 47-910 (939)
5 3hdi_A Processing protease; CA 1.0 1 1 361.7 38.2 396 363-788 5-410 (421)
6 3eoq_A Putative zinc protease; 1.0 1 1 361.5 34.6 391 363-783 5-405 (406)
7 3gwb_A Peptidase M16 inactive 1.0 1 1 351.8 35.9 397 361-784 15-423 (434)
8 1pp9_A Ubiquinol-cytochrome C 1.0 1 1 351.2 37.9 402 362-793 16-439 (446)
9 1hr6_B Beta-MPP, mitochondrial 1.0 1 1 347.5 39.8 402 362-791 9-437 (443)
10 3ami_A Zinc peptidase; alpha/b 1.0 1 1 341.3 35.5 401 362-788 9-428 (445)
No 1
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=1.00 E-value=1 Score=878.40 Aligned_cols=787 Identities=28% Similarity=0.452 Sum_probs=676.1
Q ss_pred CCCCCCCC---CCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCH
Q ss_conf 93112699---938999961899999995599999830188999988079999830017552200159914898115998
Q 003692 1 MSVSNDDE---NKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNT 77 (802)
Q Consensus 1 ~~~~~~d~---~~~~~~g~~~e~~~~~G~ah~leh~~~~gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~ 77 (802)
+|+.+.|. +++|.+|+++|+.+++|+||+||||+|+||++||..+++.++..+.+|+++||+|+.|+|+|++++.+.
T Consensus 99 l~i~~~~~~~~~~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lNA~T~~D~T~Y~~~~~~~ 178 (1193)
T 3s5m_A 99 ISLGTNDPLDVEQAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMNN 178 (1193)
T ss_dssp EEEEECCTTCCCEEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEEEEECSSEEEEEEEESSH
T ss_pred EEEECCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEECCH
T ss_conf 99998998707899999978999997119999999983799898856699999975448248768768759999994578
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCC--------------CCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 75999999996201088776660125230230124899--------------9887521277834311049958999999
Q 003692 78 KDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNP--------------SEDITYKGVVFNEMKGVYSQPDNILGRA 143 (802)
Q Consensus 78 ~~~~~~l~~~~d~~~~p~~~~~~~~~~~e~~~~~~~~~--------------~~~~~~k~~v~~e~~~~~~~~~~~~~~~ 143 (802)
++++.+|++++|++++|.|.+++.+|.+|+||+|+++. ++++..|++|++||++..++|..++.+.
T Consensus 179 ~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~~~~~p~~~~~~~ 258 (1193)
T 3s5m_A 179 KDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALSSPLEDLYHE 258 (1193)
T ss_dssp HHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 88999999999998587876321102245666543111001101222222221004589999999997558999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCC---------
Q ss_conf 99981899999988888868568899999999998405799809999917998899999413024432123---------
Q 003692 144 AQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFS--------- 214 (802)
Q Consensus 144 ~~~~~~~~~~~~~~~~G~~~~i~~~t~~~l~~f~~~~y~p~n~~l~v~G~~d~~~~~~~i~~~~~~~~~~~--------- 214 (802)
+.+.+||+|||+++++|++++|+++|+++|++||++||+|+||+|+++||+|+++++++++ ..|+.++..
T Consensus 259 l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~-~~f~~~~~~~~~~~~~~~ 337 (1193)
T 3s5m_A 259 EMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVD-QYLGQLDYSKYRDDAVES 337 (1193)
T ss_dssp HHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHH-HHHTTCCGGGCCCCCCCC
T ss_pred HHHHHCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHH-HHHCCCCCCCCCCCCCCC
T ss_conf 9998579999988999999998518999999999986095666999992688999999999-986058877777666666
Q ss_pred ---CC----------CC------C---------CC-------C-----------------------------CCH-----
Q ss_conf ---33----------35------8---------89-------9-----------------------------510-----
Q 003692 215 ---LR----------EN------N---------TG-------S-----------------------------FPR----- 225 (802)
Q Consensus 215 ---~~----------~~------~---------~~-------~-----------------------------~~~----- 225 (802)
.. .. . .+ + .+.
T Consensus 338 ~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~d~~al~ 417 (1193)
T 3s5m_A 338 VEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGSHSSDLSLENPTDYFVLL 417 (1193)
T ss_dssp CCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CCCCSTTCCCSHHHHHHHH
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 67778778886999946899986513899999826754444453223443100011111233211122456862799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 003692 226 -------------------------------------------------------------------------------- 225 (802)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (802)
T Consensus 418 vL~~iLggg~sSrL~~~L~e~gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~~~~~~~~~~~~~~~~~~I~~~L~~l~~~g 497 (1193)
T 3s5m_A 418 IINNLLIHTPESVLYKALTDCGLGNNVIDRGLNDSLVQYIFSIGLKGIKRNNEKIKNFDKVHYEVEDVIMNALKKVVKEG 497 (1193)
T ss_dssp HHHHHHHSSTTSHHHHHHHHHCSCSEEEEEEEECSSSSCEEEEEEEEECTTCTTCSCGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999779998779999996698035466545655678689999965783431453102489999999999999998729
Q ss_pred --------------------------HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
Q ss_conf --------------------------699998620123338997667666227999999985008910399999986104
Q 003692 226 --------------------------GLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILN 279 (802)
Q Consensus 226 --------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~ 279 (802)
|+.++..+.+.|.++++|...+.+...+..++..+.. ++.+++.++++||++
T Consensus 498 i~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~~l~~~~~l~~l~~~~~~--~~~~~~~li~~yll~ 575 (1193)
T 3s5m_A 498 FNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLLIFEFEKYLNIVKNKIKN--EPMYLEKFVEKHFIN 575 (1193)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTTTTSHHHHHHHHHHHHHH--STTHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHCC
T ss_conf 899999999999999877513799709999999878878079989987789999999998610--849999999998334
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99715999834935156799999999999982099999999999999999980999991000369988877899999878
Q 003692 280 NPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRV 359 (802)
Q Consensus 280 ~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~t~~el~~~k~~~~~~~~~~~~~~~~~~l~~~p~v~~~di~~~~~~~ 359 (802)
+.+++.+++.|+.++.+...+++++.++.++..+|+++++++.++.+.+..+|+.+++++.++.+|.++++||++..+.+
T Consensus 576 n~~~~~~~~~P~~~~~~~~~~~e~~~L~~~~~~ls~~~~~~i~~~~~~L~~~q~~~~~~e~l~~lP~l~~~Di~~~~~~~ 655 (1193)
T 3s5m_A 576 NAHRSVILLEGDENYAQEQENLEKQELKKRIENFNEQEKEQVIKNFEELSKYKNAEESPEHLNKFPIISISDLNKKTLEV 655 (1193)
T ss_dssp CCCEEEEEEEEESSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHTTSCCCCGGGSCSSCCCC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHCCCCCCCC
T ss_conf 99638999972887778999999999999986389999999999999999987377975469747847098768876667
Q ss_pred CCCC--------------------------------------------------------------CCCCCCEEEEEECC
Q ss_conf 9721--------------------------------------------------------------22389169994227
Q 003692 360 PTEV--------------------------------------------------------------GDINGVKVLQHDLF 377 (802)
Q Consensus 360 p~~~--------------------------------------------------------------~~~nG~~v~~~~~~ 377 (802)
|..+ ...||+++++++.+
T Consensus 656 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~ 735 (1193)
T 3s5m_A 656 PVNVYFTNINENNNIMETYNKLKTNEHMLKDNMDVFLKKYVLKNDKHNTNNNNNNNNNMDYSFTETKYEGNVPILVYEMP 735 (1193)
T ss_dssp CCEEEEECTTTCSCHHHHHHHHHTCHHHHHHHHHHHHHHHTTC---------------------CCTTTTCEEEEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 63011222221122100011111111112221100000000122222223222223322222211134498379999879
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCC----CCCC--CEEE
Q ss_conf 996699999951899981112575889986410399988999999998600341688620015799----9997--2048
Q 003692 378 TNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHG----KEDP--CCCM 451 (802)
Q Consensus 378 ~~~~v~~~i~~~~~~~~~~~~~~~~ll~~~l~~~Gt~~~s~~el~~~l~~~~~~~~~~~~~~~~~~----~~~~--~~~~ 451 (802)
++|++|++++|+++.++.++.+++++|+.+|+..||+++++.|+++.++.++||++++++..+..+ .+.+ .+++
T Consensus 736 TNGIvY~~l~fdl~~l~~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~~~~~~~~~~~~~~~ 815 (1193)
T 3s5m_A 736 TTGIVYLQFVFSLDHLTVDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDDHLNVTDKYNAQALF 815 (1193)
T ss_dssp CTTEEEEEEEEECTTCCHHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCBTTBCCCTTCCEEEE
T ss_pred CCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCEE
T ss_conf 99869999998799999788756999999998479999999999999998588558876650365544556655656469
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHH
Q ss_conf 99997543347899999999871279992689999999999875543116818999999982049346799982401299
Q 003692 452 VVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYL 531 (802)
Q Consensus 452 ~~~~~~l~~~~~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~ 531 (802)
.++++||.++++++++|+.+++++|.|++.+|++.++.+.++.+++.+.++||.+|..++.+.+++.+++.+.++|+.++
T Consensus 816 ~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~~e~~~Gl~~~ 895 (1193)
T 3s5m_A 816 NLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNIIYGYENY 895 (1193)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHHHHHHHSHHHH
T ss_pred EEEEEEHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHH
T ss_conf 99999744269999999999985799996899999999999988731424668999999998647502234420785799
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCC----CC----------CC
Q ss_conf 99999999740299999999999999861989969999719410354999999987029999----98----------54
Q 003692 532 EFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTN----SP----------VE 597 (802)
Q Consensus 532 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~----~~----------~~ 597 (802)
.+++++.+.++++++.+.++|+++++++|+++|+++.++|+.+..+++.+.++++++.|+.. .. .+
T Consensus 896 ~fl~~l~~~~e~~~~~l~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 975 (1193)
T 3s5m_A 896 LKLQEQLELAENDFKTLENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEENDKYINDMQNKVNDP 975 (1193)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHHHGGGGSCCCCSSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 99999998667559999999999999981878839999947656999999999999751210255664322222334454
Q ss_pred -CCCC--------C-CCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf -3322--------3-46899867998088820898503467789775308999999730712247664129977844323
Q 003692 598 -RVKW--------K-AHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDF 667 (802)
Q Consensus 598 -~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg~s~L~~~iRekG~aY~~~~~~ 667 (802)
...+ . ......+..+..|.+++|++.+++..+.+++|++++.|++.|||++|||++|||||||||+++++
T Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~v~yv~~~~~~~~~~~~d~~al~Vl~~iLg~~~L~~eIREkgGAYg~~s~~ 1055 (1193)
T 3s5m_A 976 TVMGWNEEIKSKKLFDEEKVKKEFFVLPTFVNSVSMSGILFKPGEYLDPSFTVIVAALKNSYLWDTVRGLNGAYGVFADI 1055 (1193)
T ss_dssp CCCCHHHHHHHTTCCCTTCCEEEEEECCCSSBEEEEEEECSCTTCBCCTHHHHHHHHHHHTHHHHHHTTTTCCSEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEEC
T ss_conf 43322222233222355555550674278646999972477779876099999999978247799997618726887761
Q ss_pred CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 688743999997589957899999969999960--899988999999998851045799278899999999919999999
Q 003692 668 DSHSGVFSFLSYRDPNLLKTLDIYDGTVDFLRE--LEMDDDTLTKAIIGTIGDVDAYQLPDAKGYSSLLRHLLGITEEER 745 (802)
Q Consensus 668 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~it~~eL~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 745 (802)
. ..|.|.|++|++|+..++++++.++++++++ +++|++||++||.+++++++.+.+|...+...+..+++|++.++.
T Consensus 1056 ~-~~G~f~~~syrdp~~~~tl~~~~~~~~~l~~~~~~~teeEL~~ak~~~~~~~d~p~~p~~~a~~~~~~~~~Gl~~d~~ 1134 (1193)
T 3s5m_A 1056 E-YDGSVVFLSARDPNLEKTLATFRESAKGLRKMADTMTENDLLRYIINTIGTIDKPRRGIELSKLSFLRLISNESEQDR 1134 (1193)
T ss_dssp C-TTSEEEEEEESBSCSHHHHHHHHTHHHHHHHHHHHCCHHHHHHHHHHHHHHHSCCCCTHHHHHHHHHHHHTTCCHHHH
T ss_pred C-CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 6-788679999807987999999999999999635898999999999999836666689699999999999819599999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH--CCCEEEEECCHHHHHHHHHH
Q ss_conf 99999996599999999999999741--79919999391118876663
Q 003692 746 QRRREEILSTSLKDFKEFADVLEAIK--DRGVAVAVASPDDVDAANKE 791 (802)
Q Consensus 746 ~~~~~~i~~vT~edi~~~a~~~l~~~--~~~~~~vvg~~~~i~~~~~~ 791 (802)
++++++|.+||++||+++|++|+.+. +...+||||+++.+...-+.
T Consensus 1135 ~~~~~~I~aVT~edv~~vA~~~~~~l~~~~~~~vvvG~~~~i~~~l~~ 1182 (1193)
T 3s5m_A 1135 VEFRKRIMNTKKEDFYKFADLLESKVNEFEKNIVIITTKEKANEYIAN 1182 (1193)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTHHHHTTEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH
T ss_conf 999999980999999999999851321367369998588885357764
No 2
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=1.00 E-value=1 Score=783.99 Aligned_cols=785 Identities=75% Similarity=1.182 Sum_probs=635.0
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHH
Q ss_conf 31126999389999618999999955999998301889999880799998300175522001599148981159987599
Q 003692 2 SVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFY 81 (802)
Q Consensus 2 ~~~~~d~~~~~~~g~~~e~~~~~G~ah~leh~~~~gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~~~~~ 81 (802)
++.+.+.+++|.+|+++|+.+++|+||+||||+|+||++||..+++.+++++.+|+++||+|+.|+|+|++.+.+.++++
T Consensus 51 ~~~~~~~~~~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~~d~T~y~~~~~~~~~~~ 130 (995)
T 2fge_A 51 SVSNEDENKVFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFY 130 (995)
T ss_dssp EEECSCSSEEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEECSSEEEEEEEESSHHHHH
T ss_pred EEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCEEEEEECCCHHHHH
T ss_conf 99769986179999678986998768999999717887899846799999755188742067798359998448889999
Q ss_pred HHHHHHHHCCCCCCC--CCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 999999620108877--666012523023012489998875212778343110499589999999998189999998888
Q 003692 82 NLVDVYFDAVFFPKC--VEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSG 159 (802)
Q Consensus 82 ~~l~~~~d~~~~p~~--~~~~~~~~~e~~~~~~~~~~~~~~~k~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (802)
.+|++++|++++|.| .++. |.+|+||+|+++++++.++|++|++||++..++|.+++.+.+.+.+||+|||+++++
T Consensus 131 ~~l~~~~d~~~~p~~~~~~~~--~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~~~~~~~~~~~py~~~~~ 208 (995)
T 2fge_A 131 NLVDVYLDAVFFPKCVDDAHT--FQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGVDSG 208 (995)
T ss_dssp HHHHHHHHHHHSBGGGTSSHH--HHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHHHHHHHHCTTSGGGSCTT
T ss_pred HHHHHHHHHHHCCCCCCCHHH--HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 999999999758787799899--987666640456554321223199998750488899999999997189998877799
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCC--C-----C---C-----C-----CC-
Q ss_conf 88685688999999999984057998099999179988999994130244321--2-----3---3-----3-----35-
Q 003692 160 GDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIE--F-----S---L-----R-----EN- 218 (802)
Q Consensus 160 G~~~~i~~~t~~~l~~f~~~~y~p~n~~l~v~G~~d~~~~~~~i~~~~~~~~~--~-----~---~-----~-----~~- 218 (802)
|++++|+++|+++|++||++||+|+||+|+++||+|+++++++++ ..|+.++ . . . . ..
T Consensus 209 G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (995)
T 2fge_A 209 GDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLS-EYLDMFEASPSPNSSKIKFQKLFSEPVRLVEKYP 287 (995)
T ss_dssp CCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHH-HHHTTCCCCSHHHHSCCCCCCCCSSCEEEEEEEE
T ss_pred CCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 996763215899999999981884216999986999999999999-9985177545677766577778888705888605
Q ss_pred ----C----C---------CCCC-HH-----HHHHHHHH--------------CCCCC----C-C------CCCCC-CC-
Q ss_conf ----8----8---------9951-06-----99998620--------------12333----8-9------97667-66-
Q 003692 219 ----N----T---------GSFP-RG-----LSLMLRSM--------------GKWIY----D-M------NPFEP-LK- 248 (802)
Q Consensus 219 ----~----~---------~~~~-~~-----~~~~~~~~--------------~~~~~----~-~------~~~~~-l~- 248 (802)
. . +... .. +.++...+ ..|.+ . . ..+.. +.
T Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~vl~~~Lg~~~~S~L~~~l~e~gl~~~~~~~~~~~~~~~~~f~i~~~~ 367 (995)
T 2fge_A 288 AGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLGTPASPLRKILLESGLGEALVSSGLSDELLQPQFGIGLKG 367 (995)
T ss_dssp CCSSSCGGGCEEEEEEEECCSSCCCHHHHHHHHHHHHHHHSSTTSHHHHHHHHTTSCSEECSCEEECSSSSCEEEEEEEE
T ss_pred CCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEEEEE
T ss_conf 67788766760899999768876798898999999999767998789999986388754265153566667079999994
Q ss_pred -----CCH--------------------HHHH----H-------------------HHH----HHC-CCC----------
Q ss_conf -----622--------------------7999----9-------------------999----850-089----------
Q 003692 249 -----YEK--------------------PLMA----L-------------------KAR----LAE-EGS---------- 265 (802)
Q Consensus 249 -----~~~--------------------~l~~----l-------------------~~~----l~~-~~~---------- 265 (802)
... .+.. + ... +.+ ...
T Consensus 368 ~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (995)
T 2fge_A 368 VSEENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMDPFEPLKYTEPLK 447 (995)
T ss_dssp ECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTTSCSSGGGCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 88878999999999999999873989999999999999997741578896179999999998766999678764599999
Q ss_pred ---C----C----HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf ---1----0----3999999861049971599983493515679999999999998209999999999999999998099
Q 003692 266 ---K----A----VFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQET 334 (802)
Q Consensus 266 ---~----~----~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~t~~el~~~k~~~~~~~~~~~~ 334 (802)
. . .+..++++++.++.+.+.+.+.|+.+......+.+..+++..+..+++++++++.++...+..++..
T Consensus 448 ~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 527 (995)
T 2fge_A 448 ALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIEMQPDPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQET 527 (995)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTTTCCCEEEEEEEEETTHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99987507860799999999981579945899998380289999999999999998738999999999999999998558
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 99910003699888778999998789721223891699942279966999999518999811125758899864103999
Q 003692 335 PDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTK 414 (802)
Q Consensus 335 ~~~~~~l~~~p~v~~~di~~~~~~~p~~~~~~nG~~v~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~ll~~~l~~~Gt~ 414 (802)
+.+++.++.+|.+.+.+|+.....+|......||++|++++++++++++++++++.+.++++..+++++++.+|...||+
T Consensus 528 ~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~nG~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~~Gt~ 607 (995)
T 2fge_A 528 PDPPEALRCVPSLNLGDIPKEPTYVPTEVGDINGVKVLRHDLFTNDIIYTEVVFDIGSLKHELLPLVPLFCQSLLEMGTK 607 (995)
T ss_dssp CCCHHHHTTSCCCCGGGSCSSCCCCCCEEEESSSSEEEEEECCCSSEEEEEEEEECTTSCTTTGGGHHHHHHHHHHSCCS
T ss_pred CCCHHHHHHCCCCCHHHCCCCCCCCCCEEEECCCCEEEEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 99867887447799766676678788435640892499986698986999999617889978834379999999848998
Q ss_pred CCCHHHHHHHHHHCCCCEEE-EEEECCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 88999999998600341688-62001579999972048999975433478999999998712799926899999999998
Q 003692 415 DLSFVQLDQLIGRKTGGISV-YPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKA 493 (802)
Q Consensus 415 ~~s~~el~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~ 493 (802)
++++.++.+.++..+|++++ +++... .+.+.+++++.++++|++++++.+++|+.+++++|.|++.++++.++.+.++
T Consensus 608 ~~s~~el~~~l~~~~ggl~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~ 686 (995)
T 2fge_A 608 DLTFVQLNQLIGRKTGGISVYPLTSSV-RGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRA 686 (995)
T ss_dssp SSCHHHHHHHHHHHSSEEEEEEEEEEE-TTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCEEEECCCCCC-CCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 888999999999731764841145466-7654556269999998364199999999999973888918999999999998
Q ss_pred HHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 75543116818999999982049346799982401299999999997402999999999999998619899699997194
Q 003692 494 RMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADG 573 (802)
Q Consensus 494 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~v~Gd~ 573 (802)
.+++...++++.+|..++.+.+++.+++.+..+|++++.++.++.+..+++++.+.++|++||+++|++++++++|+||+
T Consensus 687 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i~~~L~~~~~~~~~~~~~~~~v~Gd~ 766 (995)
T 2fge_A 687 RMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGISSSLEEIRRSLLARNGCIVNMTADG 766 (995)
T ss_dssp HHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCSTTCEEEEEECH
T ss_pred HHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECH
T ss_conf 78875442699999999987379468999997359999999999986541899999999999999728688489999488
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHH
Q ss_conf 10354999999987029-99998543322346899867998088820898503467789775308999999730712247
Q 003692 574 KNLKNSERFVGKFLDML-PTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWD 652 (802)
Q Consensus 574 ~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg~s~L~~ 652 (802)
++.+++.+.++++++.| |...... .....+.......+..|.+++++..+++.+++++++++++.|++.+||.++||.
T Consensus 767 ~~~~~~~~~~~~~~~~l~p~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~al~vl~~iLg~~~L~~ 845 (995)
T 2fge_A 767 KSLTNVEKSVAKFLDLLPENPSGGL-VTWDGRLPLRNEAIVIPTQVNYVGKAGNIYSTGYELDGSAYVISKHISNTWLWD 845 (995)
T ss_dssp HHHHHHHHHHHHHHHTSCSSCSSCS-CCCCCCCCCCCEEEECSCSSBEEEEEEEGGGGTCCCCTHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHH
T ss_conf 9998899999999985275677777-765556776544899557418999744777889866499999999977770278
Q ss_pred HHHHCCCCCCCCCCCCCCCCEEE-EEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 66412997784432368874399-99975899578999999699999608999889999999988510457992788999
Q 003692 653 RVRVSGGAYGGFCDFDSHSGVFS-FLSYRDPNLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAYQLPDAKGYS 731 (802)
Q Consensus 653 ~iRekG~aY~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~~~~~~~~~~ 731 (802)
+||++|||||+++++.. .|.+. |++|++|+..++++++.++++++++.++|++||++||.++++++..+.++...+.+
T Consensus 846 ~iRe~g~aYg~~s~~~~-~G~~~~~~s~~dp~~~~~~~~~~~~~~~l~~~~~te~el~~ak~~li~~~~~~~~~~~~~~~ 924 (995)
T 2fge_A 846 RVRVSGGAYGGFCDFDS-HSGVFSYLSYRDPNLLKTLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDVDSYQLPDAKGYS 924 (995)
T ss_dssp HTTTTTCCSEEEEEEET-TTTEEEEEEESBSCSHHHHHHHHTHHHHHHTCCCCHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHCCCCCCCCEEECC-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 86314877221317179-95689999972899899999999999999629989999999999998733688898999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHH---HHHH
Q ss_conf 999999199999999999999659999999999999974179919999391118876---6630
Q 003692 732 SLLRHLLGITEEERQRRREEILSTSLKDFKEFADVLEAIKDRGVAVAVASPDDVDAA---NKER 792 (802)
Q Consensus 732 ~~~~~~~g~~~~~~~~~~~~i~~vT~edi~~~a~~~l~~~~~~~~~vvg~~~~i~~~---~~~~ 792 (802)
.+..++.|.+.++.++++++|.+||++||+++|++|+.+.+...++|||+.+.+++. +..|
T Consensus 925 ~~~~~~~g~~~~~~~~~~~~i~~vT~edv~~~a~~~~~~~~~~~~~vvG~~~~i~~~~~~~~~~ 988 (995)
T 2fge_A 925 SLLRHLLGVTDEERQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAVASAEDIDAANNERSNF 988 (995)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHHHHHTTTC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf 9999974959999999999998299999999999998653369889988999997624134666
No 3
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=1.00 E-value=1 Score=577.61 Aligned_cols=719 Identities=14% Similarity=0.075 Sum_probs=513.0
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 89999618999999955999998301889999880799998300175522001599148981159987599999999620
Q 003692 11 VFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDA 90 (802)
Q Consensus 11 ~~~~g~~~e~~~~~G~ah~leh~~~~gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d~ 90 (802)
+|++|+++||.+..|+||+||||+|+||++||..+.+.+++.. +|+.+||+|+.|+|+|++.+ +.++++.+|++++|+
T Consensus 62 ~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~-~Gg~~NA~T~~d~T~y~~~~-~~~~l~~~l~~~~d~ 139 (990)
T 3cww_A 62 DVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSE-HAGSSNAFTSGEHTNYYFDV-SHEHLEGALDRFAQF 139 (990)
T ss_dssp EESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHT-TTCEEEEEECSSCEEEEEEE-EGGGHHHHHHHHHGG
T ss_pred EECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH-CCCCEEEEECCCCEEEEEEE-CHHHHHHHHHHHHHH
T ss_conf 9552587799999973999999880688779980569999997-69950689889845999993-789999999999999
Q ss_pred CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 108877666012523023012489998875212778343110499589999999998189999998888886856889--
Q 003692 91 VFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKL-- 168 (802)
Q Consensus 91 ~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~~k~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~i~~~-- 168 (802)
+++|.|++++ |.+| |++|.+|+++..++|.+++.+.+...+|++|||+++++|++++|.++
T Consensus 140 ~~~p~f~~~~--~~~E---------------~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~~G~~~~l~~~~~ 202 (990)
T 3cww_A 140 FLSPLFDESA--KDRE---------------VNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPN 202 (990)
T ss_dssp GTCBCCCHHH--HHHH---------------HHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCCSCCHHHHTHHHH
T ss_pred HHCCCCCHHH--HHHH---------------HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCC
T ss_conf 8575899899--9999---------------9999999985538839999999998568999963478898999840201
Q ss_pred -----CHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CHHHH-----HH-------
Q ss_conf -----9999999998405799809999917998899999413024432123333588995-10699-----99-------
Q 003692 169 -----TFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSF-PRGLS-----LM------- 230 (802)
Q Consensus 169 -----t~~~l~~f~~~~y~p~n~~l~v~G~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~------- 230 (802)
++++|++||++||+|+||+|+++||+|+++++++++ ..|+.++........... |.... ..
T Consensus 203 ~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (990)
T 3cww_A 203 QEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVV-KLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDI 281 (990)
T ss_dssp HTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHH-HHHTTSCCCCCCCCCCCSCSSCGGGSSEEEEECCSSSC
T ss_pred CCCCHHHHHHHHHHHHHCCHHHEEEEEECCCCHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCHHHCCEEEEEEECCCC
T ss_conf 04652999999999971778663899986999999999999-97137865788899888899996780769999987877
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC----------CE-EEEEEECCC---CHHH
Q ss_conf 862012333899766766622799999998500891039999998610499----------71-599983493---5156
Q 003692 231 LRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILNNP----------HC-VTVEMQPDP---EKAS 296 (802)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~----------~~-~~~~~~p~~---~~~~ 296 (802)
..+...|..+.... ......+..+...+.++..++++..|.++.+..+. .+ +.+...... ...+
T Consensus 282 ~~l~~~~~~~~~~~--~~~~~~~~~l~~lLg~~~~~sl~~~Lr~~g~~~~~~a~~~~~~~~~~~f~i~~~~~~~g~~~~~ 359 (990)
T 3cww_A 282 RNLYVTFPIPDLQK--YYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKAGARGFMFFIINVDLTEEGLLHVE 359 (990)
T ss_dssp CEEEEEEEECCCGG--GTTTCHHHHHHHHHTCCSTTCHHHHHHHTTSCSCEEEEEEEEETTEEEEEEEEECCHHHHHTHH
T ss_pred CEEEEEEECCCHHH--HHHHCHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEEECHHHHHHHH
T ss_conf 48999997688056--5555889999999569999948999987797112565356677885179999998847765499
Q ss_pred HHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHCCCC---------------CCCCCC-------CC----------
Q ss_conf 7999999999999-82099999999999999999980999---------------991000-------36----------
Q 003692 297 RDEAAEKEILAKV-KSSMTKEDLAELARATEELRLKQETP---------------DPPEAL-------RS---------- 343 (802)
Q Consensus 297 ~~~~~~~~~l~~~-~~~~t~~el~~~k~~~~~~~~~~~~~---------------~~~~~l-------~~---------- 343 (802)
...+.+.+.++.+ ..|++++++++++........+.... .+++.+ ..
T Consensus 360 ~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~t~~~i~~~~ 439 (990)
T 3cww_A 360 DIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVL 439 (990)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTTSCGGGTTTTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHCCCHHHHHHHH
T ss_conf 99999999999998579838999999999997366677699799999999998627999973262245318999999999
Q ss_pred --------------------------------------------------------------CCC-CCCCCCCCCCCCCC
Q ss_conf --------------------------------------------------------------998-88778999998789
Q 003692 344 --------------------------------------------------------------VPS-LSLRDIPKEPIRVP 360 (802)
Q Consensus 344 --------------------------------------------------------------~p~-v~~~di~~~~~~~p 360 (802)
+|. +++.+++......|
T Consensus 440 ~~l~~~~~~~~~~~p~~~~~~~~~e~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ip~~~~~~~~~~~~~~~p 519 (990)
T 3cww_A 440 DKLRPENVRVAIVSKSFEGKTDRTEEWYGTQYKQEAIPDAVIAKWQNAALNGKFKLPTKNEFIPTNFEILPLEAAATPYP 519 (990)
T ss_dssp TTCSGGGCEEEEECGGGTTCCCEECTTTCCEEEEEECCHHHHHHHHTCCCCTTCCCCCCCTTCCCCCCCCCCCTTCCSSC
T ss_pred HHCCHHHEEEEEECCCCCCCCCCCCCEECCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 84697677999973777777673331637621562389999997645788745569998877886650045777888999
Q ss_pred CCCCCCCCCEEEEEECCC----CCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 721223891699942279----9669999995189998111257588998641039998899999999860034168862
Q 003692 361 TEVGDINGVKVLQHDLFT----NDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYP 436 (802)
Q Consensus 361 ~~~~~~nG~~v~~~~~~~----~~~v~~~i~~~~~~~~~~~~~~~~ll~~~l~~~Gt~~~s~~el~~~l~~~~~~~~~~~ 436 (802)
....+.||++|+++++.+ ++.+++++.++.+..+++..+++.++..++... ++..++...+. |.++++++
T Consensus 520 ~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~----~~~~~~~~~l~--G~~~~~~~ 593 (990)
T 3cww_A 520 ALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDS----LNEYAYAAELA--GLSYDLQN 593 (990)
T ss_dssp EEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHH----HHHHHHHHHHT--TEEEEEEE
T ss_pred EEEECCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHC--CEEEEEEE
T ss_conf 5654388716755168765788689999996897779999999999999999999----87864489868--74899997
Q ss_pred EECCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 00157999997204899997543347899999999871279992689999999999875543116818999999982049
Q 003692 437 FTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLN 516 (802)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 516 (802)
+ .+++.+++++++++++.+++++.+++++|.|+ +++++.++.+.+..+++...+.++.++...+...++
T Consensus 594 ~----------~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~-~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~ 662 (990)
T 3cww_A 594 T----------IYGMYLSVKGYNDKQPILLKKIIEKMATFEID-EARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMT 662 (990)
T ss_dssp E----------TTEEEEEEEEESTTHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHB
T ss_pred C----------CCEEEEEEEECCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 6----------87599999842186899999999998658989-999999999999998866624859999999999967
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH---HHHHHHCCCCC
Q ss_conf 346799982401299999999997402999999999999998619899699997194103549999---99987029999
Q 003692 517 TAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERF---VGKFLDMLPTN 593 (802)
Q Consensus 517 ~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~v~Gd~~~~~~~~~~---~~~~~~~l~~~ 593 (802)
+. .+ ......+.+..+ ..++|++|+++++++.+++++|+||++. +++.++ +.++++.+|..
T Consensus 663 ~~-~~----~~~~~~~~l~~l----------t~~~l~~~~~~~~~~~~~~~~v~Gn~~~-~~~~~~~~~~~~~l~~l~~~ 726 (990)
T 3cww_A 663 EV-AW----TKDELKEALADV----------TLPRLKAFIPQLLSRLHIEALLHGNITK-QAALGIMQMVEDTLIEHAHT 726 (990)
T ss_dssp SS-CC----CHHHHHHHHTTC----------CHHHHHHHHHHHHHEEEEEEEEEESCCH-HHHHHHHHHHHHHHHHHHCC
T ss_pred CC-CC----CHHHHHHHHHCC----------CHHHHHHHHHHHHHHHEEEEEEECCCCH-HHHHHHHHHHHHHHHCCCCC
T ss_conf 89-99----999999988529----------9999999999998641189999758899-99999999999998346777
Q ss_pred CCCCC----CCCCCCCCCCCE-EE--ECCCCCEEEEEE-CCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHC-CCCCCCC
Q ss_conf 98543----322346899867-99--808882089850-346778977530899999973071224766412-9977844
Q 003692 594 SPVER----VKWKAHLPSANE-AI--VIPTQVNYVGKA-ANIFETGYKLNGSAYVISKHISNVWLWDRVRVS-GGAYGGF 664 (802)
Q Consensus 594 ~~~~~----~~~~~~~~~~~~-~~--~~~~~~~~~~~~-~~~~~~~~~d~~al~vl~~iLg~s~L~~~iRek-G~aY~~~ 664 (802)
..... .......+.+.. .+ ..+..++++... ++.+.+++++.+++.|++.+|+ ++|+.+|||+ |++|+++
T Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ll~~il~-~~lf~~LRek~~lgY~v~ 805 (990)
T 3cww_A 727 KPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTDMQSTSENMFLELFAQIIS-EPAFNTLRTKEQLGYIVF 805 (990)
T ss_dssp EECCGGGCCCCCBBCCCTTEEEEEEEECSSCSSEEEEEEEEEEECCHHHHHHHHHHHHHHH-HHHHHHHTTTTCCCSEEE
T ss_pred CCCCHHHCCCCCEEECCCCCEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCEEEE
T ss_conf 8874333133544883899869997068888883799999679999999999999999988-899999871127757998
Q ss_pred CCCCCCCCEEEE----EEEECC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHH
Q ss_conf 323688743999----997589-957899999969999960899988999999998851045-79927889999999991
Q 003692 665 CDFDSHSGVFSF----LSYRDP-NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDA-YQLPDAKGYSSLLRHLL 738 (802)
Q Consensus 665 ~~~~~~~g~~~~----~~~~~~-~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~~ 738 (802)
+++....|.+++ .++++| +..++++.+.+.++++.. ++|++||+++|.++++++.. .+++...+..+|..+..
T Consensus 806 s~~~~~~g~~~~~~~vqs~~dp~~~~~~i~~f~~~~~~l~~-~~te~el~~~k~~li~~~~~~~~~~~~~~~~~~~~i~~ 884 (990)
T 3cww_A 806 SGPRRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSIE-DMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIIS 884 (990)
T ss_dssp EEEEEETTEEEEEEEEEESSCHHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHT
T ss_pred EEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 88786389788999993799999999999999999999998-56999999999999998517998899999999999974
Q ss_pred C-CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----CCCEEEEECCHHHHH
Q ss_conf 9-99999999999996599999999999999741----799199993911188
Q 003692 739 G-ITEEERQRRREEILSTSLKDFKEFADVLEAIK----DRGVAVAVASPDDVD 786 (802)
Q Consensus 739 g-~~~~~~~~~~~~i~~vT~edi~~~a~~~l~~~----~~~~~~vvg~~~~i~ 786 (802)
+ ...+..+++++.|.++|++||++++++++.+. ....++|+|+.+.+.
T Consensus 885 ~~~~~d~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~~~~~v~v~g~~~~~~ 937 (990)
T 3cww_A 885 QQYNFDRDNTEVAYLKTLTKADIIKFYKEMLAVDAPRRHKVSVHVLAREMDSN 937 (990)
T ss_dssp TCCCTTHHHHHHHHHTTCCHHHHHHHHHHHTSTTCTTCEEEEEEEECTTC---
T ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
T ss_conf 89887767999999982899999999999860368877779999977787533
No 4
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=1.00 E-value=1 Score=555.04 Aligned_cols=719 Identities=13% Similarity=0.110 Sum_probs=490.6
Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 38999961899999995599999830188999988079999830017552200159914898115998759999999962
Q 003692 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (802)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~leh~~~~gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d 89 (802)
++|++|+..|+.++.|+||+||||+|+||++||..+.+.+.+ ...|+.+||+|+.|+|+|++. ++.++++.+|++++|
T Consensus 47 l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l-~~~Gg~~NA~T~~d~T~y~~~-~~~~~l~~~L~~l~d 124 (939)
T 1q2l_A 47 LVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYL-KMHGGSHNASTAPYRTAFYLE-VENDALPGAVDRLAD 124 (939)
T ss_dssp EEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHH-HTTTCEEEEEECSSCEEEEEE-ECGGGHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH-HHCCCCCEEEECCCCEEEEEE-ECHHHHHHHHHHHHH
T ss_conf 996725888999998569999987806888799936599999-976995157988986799999-478999999999999
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--
Q ss_conf 010887766601252302301248999887521277834311049958999999999818999999888888685688--
Q 003692 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPK-- 167 (802)
Q Consensus 90 ~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~~k~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~i~~-- 167 (802)
++.+|.|++++ |++| |++|.+|+++..++|.+++.+.+.+.+|++|||+++++|++++|.+
T Consensus 125 ~~~~p~f~~~~--~~~E---------------r~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~ 187 (939)
T 1q2l_A 125 AIAEPLLDKKY--AERE---------------RNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKP 187 (939)
T ss_dssp HHHCBCCCSTT--HHHH---------------HHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCCSCCHHHHSCBT
T ss_pred HHHCCCCCHHH--HHHH---------------HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 98577999899--9999---------------999999998564987999999999756899997667889999971678
Q ss_pred --CCHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH--H--HHHHH---------H
Q ss_conf --9999999999840579980999991799889999941302443212333358899510--6--99998---------6
Q 003692 168 --LTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFPR--G--LSLML---------R 232 (802)
Q Consensus 168 --~t~~~l~~f~~~~y~p~n~~l~v~G~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~---------~ 232 (802)
++.++|++||++||+|+||+|+|+||+|++++.++++ ..|+.++...........|. . ..... .
T Consensus 188 ~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (939)
T 1q2l_A 188 GNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAA-DTFGRVPNKESKKPEITVPVVTDAQKGIIIHYVPALPRKV 266 (939)
T ss_dssp TBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHH-HTGGGSCCCCCCCCCCCSCSCCGGGSSEEEEECCSSCCCE
T ss_pred CCHHHHHHHHHHHHCCCHHHEEEEEECCCCHHHHHHHHH-HHHHHHCCCCCCCCCCCCCCCCHHHCCEEEEEEECCCCCE
T ss_conf 845999999999961587356999974999999999999-9864333588789978889999789477999982787718
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCC--------------CCCEEEEEEECCC-CHHHH
Q ss_conf 20123338997667666227999999985008910399999986104--------------9971599983493-51567
Q 003692 233 SMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILN--------------NPHCVTVEMQPDP-EKASR 297 (802)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~--------------~~~~~~~~~~p~~-~~~~~ 297 (802)
....|..+... .. .....+..+...+.+..+++++..|.++.+.. +.|.+.+.+.+.. ...+.
T Consensus 267 l~i~~~~~~~~-~~-~~~~~~~~l~~lLg~~~~s~L~~~L~~~gl~~~~~a~~~~~~~~~~g~f~i~~~~~~~~~~~~~~ 344 (939)
T 1q2l_A 267 LRVEFRIDNNS-AK-FRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQ 344 (939)
T ss_dssp EEEEEEEECCG-GG-GGGCHHHHHHHHHHCCCTTSHHHHHHHTTCEEEEEEEEESSTTSSEEEEEEEEEECHHHHHTHHH
T ss_pred EEEEEECCCHH-HH-HHHCHHHHHHHHHCCCCCCCHHHHHHHCCCCHHEEECCCCCCCCCCEEEEEEEEECHHHHHHHHH
T ss_conf 99999768727-76-65478999999956899871999998769712124334555688851899999989466652999
Q ss_pred HHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHCCCCC---------------CCCC-------CCC-----------
Q ss_conf 999999999999-820999999999999999999809999---------------9100-------036-----------
Q 003692 298 DEAAEKEILAKV-KSSMTKEDLAELARATEELRLKQETPD---------------PPEA-------LRS----------- 343 (802)
Q Consensus 298 ~~~~~~~~l~~~-~~~~t~~el~~~k~~~~~~~~~~~~~~---------------~~~~-------l~~----------- 343 (802)
..+.+.+.++.+ ..|++++|++++|+.......+..... +++. +..
T Consensus 345 ~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~vt~~~i~~~~~ 424 (939)
T 1q2l_A 345 VVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLA 424 (939)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHTTSCGGGTTTTTTCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCHHHHCCCHHHHHHHHH
T ss_conf 99999999999986798599999999998722034577885999999999865089999711722131069999999998
Q ss_pred -C-----------CCCCC-------------C-----------------C--CCCCC---------------CCCCCCCC
Q ss_conf -9-----------98887-------------7-----------------8--99999---------------87897212
Q 003692 344 -V-----------PSLSL-------------R-----------------D--IPKEP---------------IRVPTEVG 364 (802)
Q Consensus 344 -~-----------p~v~~-------------~-----------------d--i~~~~---------------~~~p~~~~ 364 (802)
+ |.... . . +|... ...|....
T Consensus 425 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~n~~~~~~~~~~~~~~~~~~p~~~~ 504 (939)
T 1q2l_A 425 MMTPQNARIWYISPKEPHNKTAYFVDAPYQVDKISAQTFADWQKKAADIALSLPELNPYIPDDFSLIKSEKKYDHPELIV 504 (939)
T ss_dssp HCSGGGCEEEEECTTCCCCEECTTTCCEEEEEECCHHHHHHHHHHHHTCCCCCCCCCTTCCCCCCCCCCSSCCSSCEEEE
T ss_pred HCCHHHCEEEEECCCCCCCCCCCEECCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 46987748999827888773345437742563089999998754686535669997767886753056767899997999
Q ss_pred CCCCCEEEEEECCC--C-CEEEEEEEEECCC--CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 23891699942279--9-6699999951899--98111257588998641039998899999999860034168862001
Q 003692 365 DINGVKVLQHDLFT--N-DVLYTEVVFDMSS--LKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTS 439 (802)
Q Consensus 365 ~~nG~~v~~~~~~~--~-~~v~~~i~~~~~~--~~~~~~~~~~ll~~~l~~~Gt~~~s~~el~~~l~~~~~~~~~~~~~~ 439 (802)
+.||++|++++++. . +.+.+.+.+..+. .+.+..+..+++..++. .|++++ ++...+.+. +++++. .
T Consensus 505 l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~-~g~~~~---~~~~~l~G~--~~~~~~-~- 576 (939)
T 1q2l_A 505 DESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAG-LALDQL---SNQASVGGI--SFSTNA-N- 576 (939)
T ss_dssp EETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHH-HHHHHH---HHHHHHTTE--EEEEEE-S-
T ss_pred ECCCCEEEECCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHH-HHHHHH---HHHHHHCCC--EEEEEE-C-
T ss_conf 77981685557875589986799999958965589999999999999999-999987---527997694--899960-8-
Q ss_pred CCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHH
Q ss_conf 57999997204899997543347899999999871279992689999999999875543116818999999982049346
Q 003692 440 SIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAG 519 (802)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 519 (802)
+++.+++++.+++++.+++++.+.+++|.|++ ++++.++++.+..+++...+++...+.......++++.
T Consensus 577 ---------~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~-~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~~ 646 (939)
T 1q2l_A 577 ---------NGLMVNANGYTQRLPQLFQALLEGYFSYTATE-DQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPY 646 (939)
T ss_dssp ---------SEEEEEEEEESSSHHHHHHHHHHHHHHCCCCS-HHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSSC
T ss_pred ---------CCEEEEEECCCHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf ---------95799997656769999999999974789899-99999999999997634206839999999999966899
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 79998240129999999999740299999999999999861989969999719410354999999987029999985433
Q 003692 520 WISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERV 599 (802)
Q Consensus 520 ~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~ 599 (802)
+ .....+..+.. ...++|++||+++|.+.+++++|+||++. ++++++++++++.|+........
T Consensus 647 -----~---~~~~~~~~l~~-------it~~~l~~f~~~~~~~~~~~~~vvGn~~~-~~~~~l~~~~~~~l~~~~~~~~~ 710 (939)
T 1q2l_A 647 -----F---SRDERRKILPS-------ITLKEVLAYRDALKSGARPEFMVIGNMTE-AQATTLARDVQKQLGADGSEWCR 710 (939)
T ss_dssp -----C---CHHHHHHHGGG-------CCHHHHHHHHHHHHTTCEEEEEEEESCCH-HHHHHHHHHHHHHHTCCCSCCCC
T ss_pred -----C---CHHHHHHHHHC-------CCHHHHHHHHHHHHHHHEEEEEEECCCCH-HHHHHHHHHHHHHHCCCCCCCCC
T ss_conf -----9---99999999851-------89999999999998642089999759899-99999999999997368865554
Q ss_pred CCCCCCCCCCE-EEECCCC--CEEE-EEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHC-CCCCCCCCCCCCCCCEE
Q ss_conf 22346899867-9980888--2089-850346778977530899999973071224766412-99778443236887439
Q 003692 600 KWKAHLPSANE-AIVIPTQ--VNYV-GKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVS-GGAYGGFCDFDSHSGVF 674 (802)
Q Consensus 600 ~~~~~~~~~~~-~~~~~~~--~~~~-~~~~~~~~~~~~d~~al~vl~~iLg~s~L~~~iRek-G~aY~~~~~~~~~~g~~ 674 (802)
......+.+.. .+..+.+ .+.+ ...++....+.++.+.+.+|+.+++ ++||.+||++ |++|+++++.....+..
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~-s~lf~~LRek~gl~Y~v~s~~~~~~~~~ 789 (939)
T 1q2l_A 711 NKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQ-PWFYNQLRTEEQLGYAVFAFPMSVGRQW 789 (939)
T ss_dssp CEEECCCSCEEEEEEECCSSSCEEEEEEEECSSCCHHHHHHHHHHHHHHHH-HHHTHHHHTSCCSSSCEEEEEEEETTEE
T ss_pred CCEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCEEEEEEEECCCEE
T ss_conf 535870799548996689998742699999669999999999999999988-8889999999874715534676539756
Q ss_pred --EEEEEE-CCCHH---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHH-HCCCHHHHH
Q ss_conf --999975-89957---899999969999960899988999999998851045-7992788999999999-199999999
Q 003692 675 --SFLSYR-DPNLL---KTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDA-YQLPDAKGYSSLLRHL-LGITEEERQ 746 (802)
Q Consensus 675 --~~~~~~-~~~~~---~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~-~g~~~~~~~ 746 (802)
.|.+.. ..++. ++.+.+.+.+..+.+ ++|++||+++|..+++++.. .+++...+..+|...+ .+...++.+
T Consensus 790 g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~~-~~t~~el~~~k~~l~~~~~~~~~s~~~~~~~~w~~i~~~~~~~d~~~ 868 (939)
T 1q2l_A 790 GMGFLLQSNDKQPSFLWERYKAFFPTAEAKLR-AMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRD 868 (939)
T ss_dssp EEEEEEEESSSCHHHHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHTCTTCCHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 89999987999989999999999999999998-68999999999999998617999899999999999853898878689
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCCEEE--EECCHHHHH
Q ss_conf 9999996599999999999999741799199--993911188
Q 003692 747 RRREEILSTSLKDFKEFADVLEAIKDRGVAV--AVASPDDVD 786 (802)
Q Consensus 747 ~~~~~i~~vT~edi~~~a~~~l~~~~~~~~~--vvg~~~~i~ 786 (802)
++.+.|++||++||++++++|+.......++ |+|+.....
T Consensus 869 ~~~~~i~~vT~~dv~~~a~~~l~~~~~~~l~v~v~G~~~~~~ 910 (939)
T 1q2l_A 869 KIVAQIKLLTPQKLADFFHQAVVEPQGMAILSQISGSQNGKA 910 (939)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHTTSCSSEEEEEEECCSSHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
T ss_conf 999998608999999999998447777779999966788753
No 5
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=1.00 E-value=1 Score=361.69 Aligned_cols=396 Identities=11% Similarity=0.073 Sum_probs=315.5
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEECCCCCC--CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 122389169994227996699999951899981--112575889986410399988999999998600341688620015
Q 003692 363 VGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ--ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSS 440 (802)
Q Consensus 363 ~~~~nG~~v~~~~~~~~~~v~~~i~~~~~~~~~--~~~~~~~ll~~~l~~~Gt~~~s~~el~~~l~~~~~~~~~~~~~~~ 440 (802)
.++.||++|++.+.+..+++++.+++++|+..+ +..+.++++.++++ .||++++..++.+.++..||+++++++
T Consensus 5 ~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf-~gt~~~~~~~~~~~l~~~G~~~na~t~--- 80 (421)
T 3hdi_A 5 MTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFF-KGTNTRSAQEIAEFFDSIGGQVNAFTS--- 80 (421)
T ss_dssp EECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTT-SBBSSSBHHHHHHHHHTTTSCEEEEEC---
T ss_pred EECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHC-CCCCCCCHHHHHHHHHHHCCCEEEEEC---
T ss_conf 9869998899998799977999999823457889998867999999862-798999999999999984881202435---
Q ss_pred CCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHH
Q ss_conf 79999972048999975433478999999998712799926899999999998755431168189999999820493467
Q 003692 441 IHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGW 520 (802)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 520 (802)
.+.+.+++++++++++++++++++++.+|.|++ +.++..+....++++.... ++...+.......++++++
T Consensus 81 -------~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~-~~~~~ek~~v~~e~~~~~~-~p~~~~~~~~~~~~~~~~p 151 (421)
T 3hdi_A 81 -------KEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQK-EELEKERKVVFEEIKMVDD-TPDDIVHDLLSSATYGKHS 151 (421)
T ss_dssp -------SSCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCH-HHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTSG
T ss_pred -------CCEEEEEEEECHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHCCCCC
T ss_conf -------656999999648779999999999986899998-9999999999999987568-8889999999998248999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99982401299999999997402999999999999998619899699997194103549999999870299999854332
Q 003692 521 ISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVK 600 (802)
Q Consensus 521 ~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 600 (802)
+.... ++..+.+..+ ..++|++||+++|+|+|++++|+||++ +++.+.++++|+.||.....+..
T Consensus 152 ~~~~~--~G~~~~l~~i----------t~~~l~~f~~~~y~p~n~~l~v~Gd~~--~~~~~~v~~~f~~~~~~~~~~~~- 216 (421)
T 3hdi_A 152 LGYPI--LGTVETLNSF----------NEGMLRHYMDRFYTGDYVVISVAGNVH--DELIDKIKETFSQVKPTTYNYQG- 216 (421)
T ss_dssp GGSCT--TCCHHHHHHC----------CHHHHHHHHHHHSSTTTEEEEEEESCC--HHHHHHHHHHTTSSCCCCCCCCC-
T ss_pred CCCCC--CCCHHHHHHC----------CHHHHHHHHHHHCCCCCEEEEEEECCC--HHHHHHHHHHHCCCCCCCCCCCC-
T ss_conf 99988--6898999759----------999999999984484667999980887--99999999983688888888788-
Q ss_pred CCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHC---CCCCHHHHHHC-CCCCCCCCCCCC--CCCEE
Q ss_conf 2346899867998088820898503467789775308999999730---71224766412-997784432368--87439
Q 003692 601 WKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHIS---NVWLWDRVRVS-GGAYGGFCDFDS--HSGVF 674 (802)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg---~s~L~~~iRek-G~aY~~~~~~~~--~~g~~ 674 (802)
..+...+.......+.+++++.++++++++++++++++.|++.+|| +|+||++|||+ |++|++++++.. ..|.|
T Consensus 217 ~~~~~~~~~~~~~~~~~q~~v~~~~~~~~~~~~d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~~~~g~~ 296 (421)
T 3hdi_A 217 EKPMFLPNRIVRKKETEQAHLCLGYPGLPIGDKDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGML 296 (421)
T ss_dssp CCCCCCCCEEEEECCCSEEEEEEEEECCCTTCTTHHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEECSSCEEE
T ss_pred CCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCEE
T ss_conf 98877885388607888458999976699898169999999999679963279999987359779999751466788369
Q ss_pred EEEEEECC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99997589-957899999969999960899988999999998851045-7992788999999999199999999999999
Q 003692 675 SFLSYRDP-NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDA-YQLPDAKGYSSLLRHLLGITEEERQRRREEI 752 (802)
Q Consensus 675 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i 752 (802)
.+++.++| +..++.+.+.+.++.+++.++|++||++||..+++++.. .+++...+.......+.+...++.+++.+.|
T Consensus 297 ~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 376 (421)
T 3hdi_A 297 TIYAGTGHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSLDEMIEQI 376 (421)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCCHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99998088789999999999999998579999999999999999998706899999999999999669989999999999
Q ss_pred HCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHH
Q ss_conf 659999999999999974179919999391118876
Q 003692 753 LSTSLKDFKEFADVLEAIKDRGVAVAVASPDDVDAA 788 (802)
Q Consensus 753 ~~vT~edi~~~a~~~l~~~~~~~~~vvg~~~~i~~~ 788 (802)
.+||++||+++|++|+ + +...++++|+.+.++..
T Consensus 377 ~~vt~~dv~~~a~~~~-~-~~~~~~vvgp~~~ip~~ 410 (421)
T 3hdi_A 377 NAVQKQDVSRLAKILL-S-ASPSISLINANGELPKA 410 (421)
T ss_dssp HHCCHHHHHHHHHHHT-T-SCCEEEEEESSCSCCSC
T ss_pred HCCCHHHHHHHHHHHC-C-CCCEEEEECCHHCCCCH
T ss_conf 7089999999999970-5-27589998750017512
No 6
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=361.47 Aligned_cols=391 Identities=10% Similarity=0.027 Sum_probs=313.8
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEECCCCC-CCCCCCH-HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 12238916999422799669999995189998-1112575-889986410399988999999998600341688620015
Q 003692 363 VGDINGVKVLQHDLFTNDVLYTEVVFDMSSLK-QELLPLI-PLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSS 440 (802)
Q Consensus 363 ~~~~nG~~v~~~~~~~~~~v~~~i~~~~~~~~-~~~~~~~-~ll~~~l~~~Gt~~~s~~el~~~l~~~~~~~~~~~~~~~ 440 (802)
.++.||++|++.+.+..+.+.+.+++++|+.. +....++ +++.++++ .||++++..++.+.++..||.++++++
T Consensus 5 ~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf-~Gt~~~~~~~~~~~l~~~G~~~na~t~--- 80 (406)
T 3eoq_A 5 AELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVF-KGPEDMDALAVNRAFDRMGAQYNAFTS--- 80 (406)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHT-TCCTTCCHHHHHHHHHHTTCEEEEEEC---
T ss_pred EECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCCCCHHHHHHHHHHHCCCCCCEEC---
T ss_conf 9868999899998799976999999854257889998889999999871-799999989999999984887352644---
Q ss_pred CCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHH
Q ss_conf 79999972048999975433478999999998712799926899999999998755431168189999999820493467
Q 003692 441 IHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGW 520 (802)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 520 (802)
.+.+.+++++++++++.+++++++++ +|.|++ +.++..+....++++.... ++...+.......++++++
T Consensus 81 -------~d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~-~~~~~ek~~v~~e~~~~~~-~p~~~~~~~~~~~~~~~~p 150 (406)
T 3eoq_A 81 -------EEATVYYGAVLPEFAYDLLGLFAKLL-RPALRE-EDFQTEKLVILEEIARYQD-RPGFMAYEWARARFFQGHP 150 (406)
T ss_dssp -------SSCEEEEEEECGGGHHHHHHHHHHHT-SCCCCH-HHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTTCG
T ss_pred -------CCEEEEEEEECHHHHHHHHHHHHHHH-CCCCCH-HHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCC
T ss_conf -------77489999955788999999999985-689998-9999999999999987429-9789999999998438999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99982401299999999997402999999999999998619899699997194103549999999870299999854332
Q 003692 521 ISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVK 600 (802)
Q Consensus 521 ~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 600 (802)
+..... +..+.+..+ ..++|++||+++|+|+|++++|+||++ .+++.+.++++|+.|+..+.+++ .
T Consensus 151 ~~~~~~--G~~~~i~~~----------t~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~~i~~~f~~~~~~~~~~~-~ 216 (406)
T 3eoq_A 151 LGNSVL--GTRESITAL----------TREGMAAYHRRRYLPKNMVLAATGRVD-FDRLLAEAERLTEAWPEGEAERA-Y 216 (406)
T ss_dssp GGCCSS--CCHHHHHHC----------CHHHHHHHHHHHCCGGGEEEEEEESCC-HHHHHHHHHHHHTTCCCCCCCCC-C
T ss_pred CCCCCC--CCHHHHHHC----------CHHHHHHHHHHHCCCCCEEEEEECCCC-HHHHHHHHHHHHCCCCCCCCCCC-C
T ss_conf 988886--899999638----------999999999984886677999984899-99999999998357887888988-8
Q ss_pred CCCCCCCCCEEEECCC-CCEEEEEECCCCCCCCCCCHHHHHHHHHHC---CCCCHHHHHHCCCCCCCCCCCCCC--CCEE
Q ss_conf 2346899867998088-820898503467789775308999999730---712247664129977844323688--7439
Q 003692 601 WKAHLPSANEAIVIPT-QVNYVGKAANIFETGYKLNGSAYVISKHIS---NVWLWDRVRVSGGAYGGFCDFDSH--SGVF 674 (802)
Q Consensus 601 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~al~vl~~iLg---~s~L~~~iRekG~aY~~~~~~~~~--~g~~ 674 (802)
.+.+..+....+..+. ++.++.+++++++.++++++++.|++.+|| +|+|+++||++|++|++++++... .|.|
T Consensus 217 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~d~~~l~vl~~iLgg~~~srL~~~lre~gl~y~~~s~~~~~~~~g~~ 296 (406)
T 3eoq_A 217 PPLTPAFGVEERPYEKARALYLVALFPGVAYQEEARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEEADRAGTF 296 (406)
T ss_dssp CCCCCCCEEEEEECTTCSSEEEEEEEECCCTTCTTHHHHHHHHHHHHCTTTSHHHHHTTTTTSEEEEEEEEEECSSCEEE
T ss_pred CCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCEEE
T ss_conf 98788884699836873505899994479988811999999999967996248899999759746999874056786379
Q ss_pred EEEEEECC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99997589-957899999969999960899988999999998851045-7992788999999999199999999999999
Q 003692 675 SFLSYRDP-NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDA-YQLPDAKGYSSLLRHLLGITEEERQRRREEI 752 (802)
Q Consensus 675 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i 752 (802)
.+++..+| +..++.+.+.+.++.+++.++|++||++||..+++++.. .+++...+......++++.+.++..++.+.|
T Consensus 297 ~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 376 (406)
T 3eoq_A 297 HAYVQADPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSLEEVKARV 376 (406)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99998473329999999999999998579999999999999997787734789999999999999669989999999999
Q ss_pred HCCCHHHHHHHHHHHHHHHCCCEEEEECCHH
Q ss_conf 6599999999999999741799199993911
Q 003692 753 LSTSLKDFKEFADVLEAIKDRGVAVAVASPD 783 (802)
Q Consensus 753 ~~vT~edi~~~a~~~l~~~~~~~~~vvg~~~ 783 (802)
.+||++||+++|++||.+ +.. ++++|+.+
T Consensus 377 ~~vt~~dv~~~a~~~l~~-~~~-~~vvGp~~ 405 (406)
T 3eoq_A 377 QRVTSREVNALLERGFLE-KGL-YYLVLPHG 405 (406)
T ss_dssp HHCCHHHHHHHHHTTTTT-SCE-EEEEECCC
T ss_pred HHCCHHHHHHHHHHHCCC-CCE-EEEECCCC
T ss_conf 828999999999986585-667-99978989
No 7
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=1.00 E-value=1 Score=351.79 Aligned_cols=397 Identities=13% Similarity=0.073 Sum_probs=319.3
Q ss_pred CCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCC-HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 7212238916999422799669999995189998111257-588998641039998899999999860034168862001
Q 003692 361 TEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPL-IPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTS 439 (802)
Q Consensus 361 ~~~~~~nG~~v~~~~~~~~~~v~~~i~~~~~~~~~~~~~~-~~ll~~~l~~~Gt~~~s~~el~~~l~~~~~~~~~~~~~~ 439 (802)
...++.||++|++.+.+..+++++.+++++|+..+....+ .+++.++++ .||++++..++.+.++..|++++++++
T Consensus 15 ~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~g~a~lle~ll~-~gt~~~~~~~l~~~l~~~g~~~~a~t~-- 91 (434)
T 3gwb_A 15 QTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQDGNAPGVALLTNAMLN-EGVAGKDVGAIAQGFEGLGADFGNGAY-- 91 (434)
T ss_dssp EEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGCTTSTTHHHHHHHHGG-GEETTEEHHHHHHHHHTTTCEEEEEEC--
T ss_pred EEEECCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHCCEEEEEEC--
T ss_conf 79986898199999779997799999994565457761669999999986-576569999999999972978985406--
Q ss_pred CCCCCCCCCEEEEEEEEECCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCH
Q ss_conf 5799999720489999754334--78999999998712799926899999999998755431168189999999820493
Q 003692 440 SIHGKEDPCCCMVVRGKAMAGQ--AEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNT 517 (802)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~l~~~--~~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 517 (802)
.+++.+++++++++ ++.+++++.+++.+|.|++ ++++..+...++++++.. +++...+...+...+++
T Consensus 92 --------~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~-~~~~~~~~~~~~e~~~~~-~~p~~~~~~~~~~~~~~ 161 (434)
T 3gwb_A 92 --------KDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPA-DSLARIKNQMLAGFEYQK-QNPGKLASLELMKRLYG 161 (434)
T ss_dssp --------SSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCH-HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHT
T ss_pred --------CCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHCC
T ss_conf --------77389999961752138999999999986899898-999999999999999865-69899999999998269
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 46799982401299999999997402999999999999998619899699997194103549999999870299999854
Q 003692 518 AGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVE 597 (802)
Q Consensus 518 ~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~ 597 (802)
++++.....|. .+.+..+ ..++|++||+++|+|+|++++|+||++ .+++.+.++++|+.||......
T Consensus 162 ~~~~~~~~~G~--~~~l~~i----------t~~~l~~f~~~~y~~~~~~l~v~G~~~-~~~~~~~~~~~~~~l~~~~~~~ 228 (434)
T 3gwb_A 162 THPYAHASDGD--AKSIPPI----------TLAQLKAFHAKAYAAGNVVIALVGDLS-RSDAEAIAAQVSAALPKGPALA 228 (434)
T ss_dssp TSTTSSCTTCC--TTTTTTC----------CHHHHHHHHHHHSCGGGEEEEEEESCC-HHHHHHHHHHHHHHSCCCCCCC
T ss_pred CCCCCCCCCCC--HHHHHHC----------CHHHHHHHHHHHCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99998899899--9999718----------999999999986285773999983899-9999999999974488999988
Q ss_pred CCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHC----CCCCHHHHHHC-CCCCCCCCCCCCC--
Q ss_conf 3322346899867998088820898503467789775308999999730----71224766412-9977844323688--
Q 003692 598 RVKWKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHIS----NVWLWDRVRVS-GGAYGGFCDFDSH-- 670 (802)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg----~s~L~~~iRek-G~aY~~~~~~~~~-- 670 (802)
.........+....+..+.+++++.++++.++.++++++++.|++.+|| +|+||++||++ |++|++++++...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~ 308 (434)
T 3gwb_A 229 KIEQPAEPKASIGHIEFPSSQTSLMLAQLGIDRDDPDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPMQA 308 (434)
T ss_dssp CCCCCCCCCCEEEEEECCSSEEEEEEEEECCBTTCTTHHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECCBSS
T ss_pred CCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 88888789982699868997516871576889999646899999998489963454489998506985121022356788
Q ss_pred CCEEEEEEEECC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 743999997589-957899999969999960899988999999998851045-799278899999999919999999999
Q 003692 671 SGVFSFLSYRDP-NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDA-YQLPDAKGYSSLLRHLLGITEEERQRR 748 (802)
Q Consensus 671 ~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~ 748 (802)
.|.+.+++..+| +..++.+.+.+.++.+++.++|++||+++|..+++++.. .+++...+...+.....|.+.++.+++
T Consensus 309 ~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (434)
T 3gwb_A 309 RGPFMINLQTRAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNLPLSYLEDF 388 (434)
T ss_dssp CCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred CEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 63699999626000999999999999999865999999999999998531563469999999999999809990099999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
Q ss_conf 999965999999999999997417991999939111
Q 003692 749 REEILSTSLKDFKEFADVLEAIKDRGVAVAVASPDD 784 (802)
Q Consensus 749 ~~~i~~vT~edi~~~a~~~l~~~~~~~~~vvg~~~~ 784 (802)
.+.|.+||++||+++|++||.+ +...++++|+...
T Consensus 389 ~~~i~~vt~~dv~~~a~~~l~~-~~~~~~vvg~~~~ 423 (434)
T 3gwb_A 389 MRQSQELTVEQVKAAMNKHLNV-DKMVIVSAGPTVA 423 (434)
T ss_dssp HHHHHHCCHHHHHHHHHHHCCG-GGCEEEEEECCCC
T ss_pred HHHHHHCCHHHHHHHHHHHCCH-HHEEEEEECCCCC
T ss_conf 9999868999999999984695-1179999827123
No 8
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=1.00 E-value=1 Score=351.23 Aligned_cols=402 Identities=10% Similarity=-0.045 Sum_probs=314.5
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCC--CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 2122389169994227996699999951899981--11257588998641039998899999999860034168862001
Q 003692 362 EVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ--ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTS 439 (802)
Q Consensus 362 ~~~~~nG~~v~~~~~~~~~~v~~~i~~~~~~~~~--~~~~~~~ll~~~l~~~Gt~~~s~~el~~~l~~~~~~~~~~~~~~ 439 (802)
..++.||++|++.+.+ ++++++.++|++|+..+ +..+..+++.++++ .||++++..++.+.++..||+++++++
T Consensus 16 ~~~L~NGl~v~~~~~~-~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf-~GT~~~~~~~~~~~l~~~G~~~na~t~-- 91 (446)
T 1pp9_A 16 VSQLDNGLRVASEQSS-QPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAF-KGTKNRPGNALEKEVESMGAHLNAYST-- 91 (446)
T ss_dssp EEECTTCCEEEEEECS-CSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTT-SCBSSSTTTHHHHHHHHTTCEEEEEEC--
T ss_pred EEECCCCCEEEEEECC-CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHC-CCCCCCCHHHHHHHHHHCCCEEEEEEC--
T ss_conf 9999999889999679-987999999753048899998738999999751-789999989999999970997999976--
Q ss_pred CCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHH
Q ss_conf 57999997204899997543347899999999871279992689999999999875543116818999999982049346
Q 003692 440 SIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAG 519 (802)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 519 (802)
.+.+.+++++++++++++++++++++.+|.|++ +.++..+....++++.... ++...+...+...+++++
T Consensus 92 --------~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~-~~~~~ek~~v~~e~~~~~~-~~~~~~~~~~~~~~~~~~ 161 (446)
T 1pp9_A 92 --------REHTAYYIKALSKDLPKAVELLADIVQNCSLED-SQIEKERDVILQELQENDT-SMRDVVFNYLHATAFQGT 161 (446)
T ss_dssp --------SSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCH-HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTTS
T ss_pred --------CCEEEEEEEECHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHCCCC
T ss_conf --------876999999257889999999999985799998-9999999999999986342-888999999999862899
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 79998240129999999999740299999999999999861989969999719410354999999987029999985433
Q 003692 520 WISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERV 599 (802)
Q Consensus 520 ~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~ 599 (802)
++.... ++..+.+..+ +.++|++||+++|+|+|++++|+||++ .+++.+.++++|+.|+........
T Consensus 162 ~~~~~~--~G~~~~l~~~----------~~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~~i~~~f~~~~~~~~~~~~ 228 (446)
T 1pp9_A 162 PLAQSV--EGPSENVRKL----------SRADLTEYLSRHYKAPRMVLAAAGGLE-HRQLLDLAQKHFSGLSGTYDEDAV 228 (446)
T ss_dssp GGGSCS--SCCHHHHHHC----------CHHHHHHHHHHHCCGGGEEEEEEESCC-HHHHHHHHHHHHTTSCSCCCSSCC
T ss_pred CCCCCC--CCCHHHHHHC----------CHHHHHHHHHHCCCCCCEEEEEECCCC-HHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999998--5888999747----------999999999944678877999980899-999999999982368888887766
Q ss_pred CCC-CCCCCCCEEE-EC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHC------------CCCCHHHHHHCCCCCCCC
Q ss_conf 223-4689986799-80-88820898503467789775308999999730------------712247664129977844
Q 003692 600 KWK-AHLPSANEAI-VI-PTQVNYVGKAANIFETGYKLNGSAYVISKHIS------------NVWLWDRVRVSGGAYGGF 664 (802)
Q Consensus 600 ~~~-~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg------------~s~L~~~iRekG~aY~~~ 664 (802)
.++ ++.......+ .. +.+++++.++++++++++++++++.|++.+|| +||||++||++|++|+++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~glay~~~ 308 (446)
T 1pp9_A 229 PTLSPCRFTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQ 308 (446)
T ss_dssp CCCCCCCCCCEEEEEEETTSSSEEEEEEEEECCTTCTHHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCCSEEE
T ss_pred CCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 66778887896589705885405899997348999950999999999819986457888987779999998649838998
Q ss_pred CCCC--CCCCEEEEEEEECC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH-HHC
Q ss_conf 3236--88743999997589-957899999969999960899988999999998851045-799278899999999-919
Q 003692 665 CDFD--SHSGVFSFLSYRDP-NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDA-YQLPDAKGYSSLLRH-LLG 739 (802)
Q Consensus 665 ~~~~--~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~-~~~~~~~~~~~~~~~-~~g 739 (802)
+++. ...|.+.++++++| +..++.+.+.+.++.+++ ++|++||++||..+++++.. .+++...+......+ .+|
T Consensus 309 s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~-~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 387 (446)
T 1pp9_A 309 TFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCT-SATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYG 387 (446)
T ss_dssp EEEEECSSCEEEEEEEEECTTSHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTS
T ss_pred EECCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 850567787699999997787799999999999999864-6999999999999999998805889999999999999738
Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHC
Q ss_conf 999999999999965999999999999997417991999939111887666302
Q 003692 740 ITEEERQRRREEILSTSLKDFKEFADVLEAIKDRGVAVAVASPDDVDAANKERA 793 (802)
Q Consensus 740 ~~~~~~~~~~~~i~~vT~edi~~~a~~~l~~~~~~~~~vvg~~~~i~~~~~~~~ 793 (802)
.+.+ ..++++.|.+||++||+++|++|+.+ +...++++|+.+.++.......
T Consensus 388 ~~~~-~~~~~~~i~~vt~edv~~~a~~~~~~-~~~~~~~~g~~~~~~~~~~~~~ 439 (446)
T 1pp9_A 388 RRIP-LAEWESRIAEVDARVVREVCSKYFYD-QCPAVAGFGPIEQLPDYNRIRS 439 (446)
T ss_dssp SCCC-HHHHHHHHHTCCHHHHHHHHHHHTTT-CCCEEEEEESCTTSCCHHHHHH
T ss_pred CCCC-HHHHHHHHHCCCHHHHHHHHHHHCCC-CCCEEEEECCCCCCCCHHHHHH
T ss_conf 9899-99999999739999999999997388-8867999887444757889976
No 9
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=1.00 E-value=1 Score=347.45 Aligned_cols=402 Identities=9% Similarity=-0.003 Sum_probs=315.3
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCC--CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 2122389169994227996699999951899981--11257588998641039998899999999860034168862001
Q 003692 362 EVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ--ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTS 439 (802)
Q Consensus 362 ~~~~~nG~~v~~~~~~~~~~v~~~i~~~~~~~~~--~~~~~~~ll~~~l~~~Gt~~~s~~el~~~l~~~~~~~~~~~~~~ 439 (802)
..++.||++|++.+.+..+++++.+++++|+..+ +..+.++++.++++ .||++++..++.+.++..|++++++++
T Consensus 9 ~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~-~Gt~~~~~~~l~~~l~~~g~~~na~t~-- 85 (443)
T 1hr6_B 9 TSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAF-KGTQNRPQQGIELEIENIGSHLNAYTS-- 85 (443)
T ss_dssp EEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTT-SBBSSCBHHHHHHHHHHTTCEEEEEEC--
T ss_pred EEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCCCCHHHHHHHHHHCCCEEEEEEC--
T ss_conf 89989988899997799987999999851137899998768999998750-588899989999999975996789987--
Q ss_pred CCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHH
Q ss_conf 57999997204899997543347899999999871279992689999999999875543116818999999982049346
Q 003692 440 SIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAG 519 (802)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 519 (802)
.+.+.+++++++++++++++++++++.+|.|++ +.++..+....+++..... +++..+...+...+++++
T Consensus 86 --------~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~-~~~~~e~~~v~~e~~~~~~-~~~~~~~~~~~~~~~~~~ 155 (443)
T 1hr6_B 86 --------RENTVYYAKSLQEDIPKAVDILSDILTKSVLDN-SAIERERDVIIRESEEVDK-MYDEVVFDHLHEITYKDQ 155 (443)
T ss_dssp --------SSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCH-HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTTS
T ss_pred --------CCEEEEEEEECHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHCCCC
T ss_conf --------876899999647779999999999985789999-9999999999999984127-848899999999734799
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 79998240129999999999740299999999999999861989969999719410354999999987029999985433
Q 003692 520 WISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERV 599 (802)
Q Consensus 520 ~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~ 599 (802)
++.... ++..+.+..+ ..++|++||+++|+|+|++++|+||++ .+++.+.++++|+.||........
T Consensus 156 ~~~~~~--~g~~~~i~~~----------~~~~l~~f~~~~y~~~n~~l~v~Gd~~-~~~~~~~i~~~f~~~~~~~~~~~~ 222 (443)
T 1hr6_B 156 PLGRTI--LGPIKNIKSI----------TRTDLKDYITKNYKGDRMVLAGAGAVD-HEKLVQYAQKYFGHVPKSESPVPL 222 (443)
T ss_dssp GGGSCS--SCCHHHHHHC----------CHHHHHHHHHHHCCGGGEEEEEEESCC-HHHHHHHHHHHHTTSCCCSSCCCT
T ss_pred CCCCCC--CCCHHHHHHC----------CHHHHHHHHHHCCCCCCEEEEEECCCC-HHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 898888--3899999648----------999999999944767777999985999-999999999983579988888776
Q ss_pred CC---CCCCCCCCEEEE-C-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHC------------CCCCHHHHHHC-CCCC
Q ss_conf 22---346899867998-0-88820898503467789775308999999730------------71224766412-9977
Q 003692 600 KW---KAHLPSANEAIV-I-PTQVNYVGKAANIFETGYKLNGSAYVISKHIS------------NVWLWDRVRVS-GGAY 661 (802)
Q Consensus 600 ~~---~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg------------~s~L~~~iRek-G~aY 661 (802)
.. ..+.......+. . +.+++++.++++++++++++++++.|++.+|| +|+||++|||+ |++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay 302 (443)
T 1hr6_B 223 GSPRGPLPVFCRGERFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLAN 302 (443)
T ss_dssp TSCCSSCCCCCCEEEEEECTTCSEEEEEEEEECCCTTCTTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCS
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEE
T ss_conf 54557888877876874268855058999970599999418999999998089865578888866689999998709748
Q ss_pred CCCCCCCC--CCCEEEEEEEEC--C-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHH
Q ss_conf 84432368--874399999758--9-957899999969999960899988999999998851045-79927889999999
Q 003692 662 GGFCDFDS--HSGVFSFLSYRD--P-NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDA-YQLPDAKGYSSLLR 735 (802)
Q Consensus 662 ~~~~~~~~--~~g~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~-~~~~~~~~~~~~~~ 735 (802)
++++.+.. ..|.+.++++++ | +..++.+.+.++++.++++++|++||+++|..+++++.. .+++...+......
T Consensus 303 ~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~ 382 (443)
T 1hr6_B 303 SYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQ 382 (443)
T ss_dssp EEEEEEEECSSCEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99865247777627999998268766799999999999999753898999999999999999997268999999999999
Q ss_pred H-HHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
Q ss_conf 9-9199999999999999659999999999999974179919999391118876663
Q 003692 736 H-LLGITEEERQRRREEILSTSLKDFKEFADVLEAIKDRGVAVAVASPDDVDAANKE 791 (802)
Q Consensus 736 ~-~~g~~~~~~~~~~~~i~~vT~edi~~~a~~~l~~~~~~~~~vvg~~~~i~~~~~~ 791 (802)
+ .+|.+.+ ..++.+.|.+||++||+++|++|+.+ +...++++|+.+.+......
T Consensus 383 ~~~~g~~~~-~~~~~~~i~~vt~~dv~~~a~~~l~~-~~~~~~v~g~~~~~~~~~~~ 437 (443)
T 1hr6_B 383 VVTTGKRLS-PEEVFEQVDKITKDDIIMWANYRLQN-KPVSMVALGNTSTVPNVSYI 437 (443)
T ss_dssp HHHHSSCCC-HHHHHHHHHTCCHHHHHHHHHHHSSS-CCEEEEEEECGGGCCCHHHH
T ss_pred HHHCCCCCC-HHHHHHHHHHCCHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCHHHH
T ss_conf 985488689-99999999728999999999998266-88679998873337569999
No 10
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=1.00 E-value=1 Score=341.25 Aligned_cols=401 Identities=11% Similarity=0.071 Sum_probs=313.0
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEEECCCCC-CCCCCCH-HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 212238916999422799669999995189998-1112575-88998641039998899999999860034168862001
Q 003692 362 EVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLK-QELLPLI-PLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTS 439 (802)
Q Consensus 362 ~~~~~nG~~v~~~~~~~~~~v~~~i~~~~~~~~-~~~~~~~-~ll~~~l~~~Gt~~~s~~el~~~l~~~~~~~~~~~~~~ 439 (802)
..++.||++|++.+.+..+.+.+.+++++|+.. +....++ +++.++++ .||++++..++.+.++..|+.++++++
T Consensus 9 ~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf-~Gt~~~~~~~l~~~l~~~g~~~na~t~-- 85 (445)
T 3ami_A 9 ETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMF-KGTKDVGPGEFSKRVAAMGGRDNAFTT-- 85 (445)
T ss_dssp EEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTT-SCBSSSCTTHHHHHHHHTTCEEEEEEC--
T ss_pred EEECCCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHC-CCCCCCCHHHHHHHHHHHCCCCCCCCC--
T ss_conf 99979999899997799986999999845567889889538999987010-899889877899999982986330147--
Q ss_pred CCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHH
Q ss_conf 57999997204899997543347899999999871279992689999999999875543116818999999982049346
Q 003692 440 SIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAG 519 (802)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 519 (802)
.+.+.+++++++++++.+|+++++++.+|.|++ +.++..+....++++....+++...+.......+++++
T Consensus 86 --------~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~-~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~ 156 (445)
T 3ami_A 86 --------RDYTAYYQQVPSSRLSDVMGLEADRMANLVVDD-ELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAH 156 (445)
T ss_dssp --------SSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCH-HHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSS
T ss_pred --------CCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf --------985799997888999999999999961899998-99999999999999854458847999999999860589
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 79998240129999999999740299999999999999861989969999719410354999999987029999985433
Q 003692 520 WISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERV 599 (802)
Q Consensus 520 ~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~ 599 (802)
++..... +..+.+..+ ..++|++||+++|+|+|++++|+||++ .+++.+.++++|+.||....+...
T Consensus 157 p~~~~~~--G~~e~l~~i----------t~~~l~~f~~~~y~p~n~~l~vvGd~d-~~~~~~~v~~~f~~~~~~~~~~~~ 223 (445)
T 3ami_A 157 PYRVPVI--GWMNDIQNM----------TAQDVRDWYKRWYGPNNATVVVVGDVE-HEAVFRLAEQTYGKLARVEAPARK 223 (445)
T ss_dssp GGGSCTT--CCHHHHHHC----------CHHHHHHHHHHHCSGGGEEEEEEESCC-HHHHHHHHHHTGGGSCCCCCCCCC
T ss_pred CCCCCCC--CCHHHHHHC----------CHHHHHHHHHHHCCCCCEEEEEECCCC-HHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 8779988--899998657----------999999999971885566999982899-999999999984379888899877
Q ss_pred CCCCCCCCCCEEEE--CCCCCEEEEEECCCCC---CC-CCCCHHHHHHHHHHC---CCCCHHHHHH-CCCCCCCCCCCCC
Q ss_conf 22346899867998--0888208985034677---89-775308999999730---7122476641-2997784432368
Q 003692 600 KWKAHLPSANEAIV--IPTQVNYVGKAANIFE---TG-YKLNGSAYVISKHIS---NVWLWDRVRV-SGGAYGGFCDFDS 669 (802)
Q Consensus 600 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~-~~d~~al~vl~~iLg---~s~L~~~iRe-kG~aY~~~~~~~~ 669 (802)
....+...+...+. .+.++.++.++++++. ++ +++++++.|++.+|| +|||++++|+ +|++|++++++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~~ 303 (445)
T 3ami_A 224 QQGEPQQAGVRRVTVKAPAELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDS 303 (445)
T ss_dssp CCCCCCCCSCEEEEEEEECSSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECCC
T ss_pred CCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 78898877865899856877637999997687212568832999999999980772357899985258857999850123
Q ss_pred ---C-CCEEEEEEEECCC--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCH
Q ss_conf ---8-7439999975899--57899999969999960899988999999998851045-799278899999999919999
Q 003692 670 ---H-SGVFSFLSYRDPN--LLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDA-YQLPDAKGYSSLLRHLLGITE 742 (802)
Q Consensus 670 ---~-~g~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 742 (802)
. .|.+.+++...|. ..++.+.+.+.++.+++.++|++||+++|..+++++.. .+++...+......++.|.+.
T Consensus 304 ~~~~~~g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (445)
T 3ami_A 304 LSRGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSW 383 (445)
T ss_dssp CCSSCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCT
T ss_pred CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCH
T ss_conf 34578975999999799999999999999999999853989999999999999999997447899999999999817986
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHH
Q ss_conf 9999999999659999999999999974179919999391118876
Q 003692 743 EERQRRREEILSTSLKDFKEFADVLEAIKDRGVAVAVASPDDVDAA 788 (802)
Q Consensus 743 ~~~~~~~~~i~~vT~edi~~~a~~~l~~~~~~~~~vvg~~~~i~~~ 788 (802)
++...+.+.|.+||++||++++++||.+ +...++++|+.......
T Consensus 384 ~~~~~~~~~i~~vt~~dv~~~a~~~l~~-~~~~~~~~~p~~~~~~~ 428 (445)
T 3ami_A 384 RDDDRFYQQLRSVTAAEVKAAAARLLTD-DTLTVANLVPLPPDPKA 428 (445)
T ss_dssp THHHHHHHHHHTCCHHHHHHHHHTTSCS-TTEEEEEEEEECC----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCC
T ss_conf 7899999999749999999999997185-77399997567657310
Done!