Query 003694
Match_columns 802
No_of_seqs 596 out of 4457
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 18:55:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003694.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1741-1745//hhsearch_pdb/003694hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 410.2 20.9 257 448-718 41-319 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 408.5 17.6 257 448-718 13-289 (299)
3 3omv_A RAF proto-oncogene seri 1.0 1 1 406.0 19.0 255 447-718 35-300 (307)
4 4gt4_A Tyrosine-protein kinase 1.0 1 1 404.7 17.3 254 449-716 27-304 (308)
5 4b9d_A Serine/threonine-protei 1.0 1 1 396.6 16.4 245 448-708 24-274 (350)
6 4ase_A Vascular endothelial gr 1.0 1 1 394.2 17.3 267 439-718 55-347 (353)
7 4fie_A Serine/threonine-protei 1.0 1 1 392.4 19.8 241 448-707 151-397 (423)
8 4fih_A Serine/threonine-protei 1.0 1 1 391.4 18.4 241 448-707 74-320 (346)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 387.3 17.7 253 447-718 57-316 (336)
10 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 386.1 17.6 243 448-707 32-281 (311)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=410.24 Aligned_cols=257 Identities=25% Similarity=0.425 Sum_probs=216.0
Q ss_pred CCCCCCCEECCCCCEEEEEEEEC-------CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCEECCCC--EE
Q ss_conf 18744501147771899999989-------9389999971568300698999999998269991544414142887--28
Q 003694 448 LSFSENLRIGMGGYGTVYKGTFH-------HTFAAVKVLQSKGNIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CL 518 (802)
Q Consensus 448 ~~f~~~~~IG~G~~g~Vyk~~~~-------~~~vAvK~l~~~~~~~~~~~~~Ei~iL~~l~Hpniv~l~g~~~~~~--~l 518 (802)
.+|....+||+|+||.||+|.+. ++.||||+++.......+.|.+|+.+|++++|||||+++|+|.+.. +|
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEEECCCCCHHHHHHHCCC------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCEE
Q ss_conf 9997269997789641189------------9999989999999999999999770499995875899997676289602
Q 003694 519 VYEYMENGSLEDRLYRKNN------------TPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVS 586 (802)
Q Consensus 519 V~Ey~~~gsL~~~l~~~~~------------~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDLKp~NILld~~~~~ 586 (802)
|||||++|+|.+++..... ..+++|..++.|+.||+.||.|||+.+ ||||||||+||||+.++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCCE
T ss_conf 9982799939999986075410012211245788999999999999999999984088---4226666764898899968
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCHHHHHHCH
Q ss_conf 79320341013699996434333568755755679521125987875540338999999972-89974322002443100
Q 003694 587 KIGDVGLSTMLNSDPSFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLT-AKPAIAITHKVETAIDE 665 (802)
Q Consensus 587 KI~DFGla~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~sDv~SlGvil~ellt-g~~p~~~~~~~~~~~~~ 665 (802)
||+|||+|+.+...... .......||+.|||||++.+..|+.++|||||||+||||+| |+.||......+
T Consensus 198 Ki~DFGla~~~~~~~~~----~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~----- 268 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYY----RVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE----- 268 (329)
T ss_dssp EECCCC--------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH-----
T ss_pred EECCCCCCEECCCCCCC----EECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHH-----
T ss_conf 97666033365678753----004764556566582654479999663001057899999828999999989999-----
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 02688753207999968999999999995301268998621120357887897
Q 003694 666 DNLAEILDAQAGDWPIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERLKE 718 (802)
Q Consensus 666 ~~l~~~ld~~~~~~p~~~~~~l~~li~~Cl~~~p~~RP~~~~~v~~~L~~l~~ 718 (802)
.+..+........|..++.++.+|+.+||+.+|.+||++. +|+..|+.+..
T Consensus 269 -~~~~i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~-ei~~~L~~l~~ 319 (329)
T 4aoj_A 269 -AIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIK-DVHARLQALAQ 319 (329)
T ss_dssp -HHHHHHHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHH-HHHHHHHHHHH
T ss_pred -HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHH
T ss_conf -9999980898998644639999999997475965792999-99999998745
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=408.48 Aligned_cols=257 Identities=24% Similarity=0.411 Sum_probs=216.1
Q ss_pred CCCCCCCEECCCCCEEEEEEEEC-------CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCEECCCC--EE
Q ss_conf 18744501147771899999989-------9389999971568300698999999998269991544414142887--28
Q 003694 448 LSFSENLRIGMGGYGTVYKGTFH-------HTFAAVKVLQSKGNIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CL 518 (802)
Q Consensus 448 ~~f~~~~~IG~G~~g~Vyk~~~~-------~~~vAvK~l~~~~~~~~~~~~~Ei~iL~~l~Hpniv~l~g~~~~~~--~l 518 (802)
.+|...++||+|+||.||+|.+. +..||||+++.......+.|.+|+.+|++++|||||+++|+|.+.. +|
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCHHHHHHHCC----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCEEEE
Q ss_conf 999726999778964118----------9999998999999999999999977049999587589999767628960279
Q 003694 519 VYEYMENGSLEDRLYRKN----------NTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVSKI 588 (802)
Q Consensus 519 V~Ey~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDLKp~NILld~~~~~KI 588 (802)
|||||++|+|.++|...+ ....++|..++.|+.||+.||.|||+.+ |+||||||+|||++.++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEE
T ss_conf 99858999689999860864211123577788999999999999999999997599---046765776389879986898
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCHHHHHHCHHH
Q ss_conf 320341013699996434333568755755679521125987875540338999999972-8997432200244310002
Q 003694 589 GDVGLSTMLNSDPSFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLT-AKPAIAITHKVETAIDEDN 667 (802)
Q Consensus 589 ~DFGla~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~sDv~SlGvil~ellt-g~~p~~~~~~~~~~~~~~~ 667 (802)
+|||+|+........ .......||+.|||||++.++.|+.++|||||||+||||+| |++||...... ..
T Consensus 170 ~DFGla~~~~~~~~~----~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~------~~ 239 (299)
T 4asz_A 170 GDFGMSRDVYSTDYY----RVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN------EV 239 (299)
T ss_dssp CCCSCHHHHTGGGCE----EETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH------HH
T ss_pred CCCCCCEECCCCCCE----EECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH------HH
T ss_conf 873001006788741----66475134701038898707999703667788999999980899999998999------99
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 688753207999968999999999995301268998621120357887897
Q 003694 668 LAEILDAQAGDWPIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERLKE 718 (802)
Q Consensus 668 l~~~ld~~~~~~p~~~~~~l~~li~~Cl~~~p~~RP~~~~~v~~~L~~l~~ 718 (802)
+..+........|..++.++.+|+.+||+.+|.+||++. ++...|+.+..
T Consensus 240 ~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~-~i~~~L~~~~~ 289 (299)
T 4asz_A 240 IECITQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIK-GIHTLLQNLAK 289 (299)
T ss_dssp HHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHH
T ss_conf 999980898899741439999999997687966892999-99999987776
No 3
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=406.04 Aligned_cols=255 Identities=31% Similarity=0.491 Sum_probs=207.0
Q ss_pred HCCCCCCCEECCCCCEEEEEEEECCEEEEEEEECCCC--CCCHHHHHHHHHHHHHCCCCCEEEECCEECCCC-EEEEEEC
Q ss_conf 2187445011477718999999899389999971568--300698999999998269991544414142887-2899972
Q 003694 447 TLSFSENLRIGMGGYGTVYKGTFHHTFAAVKVLQSKG--NIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG-CLVYEYM 523 (802)
Q Consensus 447 ~~~f~~~~~IG~G~~g~Vyk~~~~~~~vAvK~l~~~~--~~~~~~~~~Ei~iL~~l~Hpniv~l~g~~~~~~-~lV~Ey~ 523 (802)
..++....+||+|+||.||+|.+.+ .||||+++... ....+.|.+|+.+|++++|||||+++|+|.+.. +||||||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmEy~ 113 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWC 113 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESSS-EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECC
T ss_pred HHHEEEEEEEEECCCCEEEEEEECC-CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEECC
T ss_conf 7994984498208886899999899-689999972689999999999999999858998874699999789589999748
Q ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 69997789641189999998999999999999999977049999587589999767628960279320341013699996
Q 003694 524 ENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVSKIGDVGLSTMLNSDPSF 603 (802)
Q Consensus 524 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDLKp~NILld~~~~~KI~DFGla~~~~~~~~~ 603 (802)
+||+|.++|.... ..++|..+..|+.||+.||.|||+.+ ||||||||+||||+.++.+||+|||+|+........
T Consensus 114 ~gGsL~~~l~~~~--~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~ 188 (307)
T 3omv_A 114 EGSSLYKHLHVQE--TKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS 188 (307)
T ss_dssp SSCBHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC-------
T ss_pred CCCCHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCC
T ss_conf 9987889875248--99999999999999999999997799---527855789978889990899441575424667764
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCHHHHHHHHH-----HH
Q ss_conf 434333568755755679521125---9878755403389999999728997432200244310002688753-----20
Q 003694 604 VSTTYKNTGPVGTLCYIDPEYQRT---GLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILD-----AQ 675 (802)
Q Consensus 604 ~~~~~~~~~~~gt~~Y~aPE~~~~---~~~~~~sDv~SlGvil~elltg~~p~~~~~~~~~~~~~~~l~~~ld-----~~ 675 (802)
......+||+.|||||++.+ +.|+.++|||||||+||||+||++||........ +...+. +.
T Consensus 189 ----~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~------~~~~~~~~~~~p~ 258 (307)
T 3omv_A 189 ----QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQ------IIFMVGRGYASPD 258 (307)
T ss_dssp ---------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHH------HHHHHHTTCCCCC
T ss_pred ----EEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH------HHHHHHCCCCCCC
T ss_conf ----031564468772498786146899878687757289999999978899899996999------9999965888887
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 7999968999999999995301268998621120357887897
Q 003694 676 AGDWPIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERLKE 718 (802)
Q Consensus 676 ~~~~p~~~~~~l~~li~~Cl~~~p~~RP~~~~~v~~~L~~l~~ 718 (802)
....+..++..+.+|+.+||+.+|.+||++. +++..|+.|+.
T Consensus 259 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~-ei~~~Le~l~~ 300 (307)
T 3omv_A 259 LSKLYKNCPKAMKRLVADCVKKVKEERPLFP-QILSSIELLQH 300 (307)
T ss_dssp STTSCTTSCHHHHHHHHHHTCSSSTTSCCHH-HHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHC
T ss_conf 2003544569999999997577976890989-99999999745
No 4
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=404.74 Aligned_cols=254 Identities=21% Similarity=0.343 Sum_probs=208.3
Q ss_pred CCCCCCEECCCCCEEEEEEEEC-------CEEEEEEEECCCC-CCCHHHHHHHHHHHHHCCCCCEEEECCEECCCC--EE
Q ss_conf 8744501147771899999989-------9389999971568-300698999999998269991544414142887--28
Q 003694 449 SFSENLRIGMGGYGTVYKGTFH-------HTFAAVKVLQSKG-NIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CL 518 (802)
Q Consensus 449 ~f~~~~~IG~G~~g~Vyk~~~~-------~~~vAvK~l~~~~-~~~~~~~~~Ei~iL~~l~Hpniv~l~g~~~~~~--~l 518 (802)
++....+||+|+||.||+|.+. ++.||||+++... ....+.|.+|+.+|++++|||||+++|+|.+.. +|
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEE
T ss_conf 88586691358884899999857765888869999998801496899999999999985899898773649988998899
Q ss_pred EEEECCCCCHHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCE
Q ss_conf 9997269997789641189-------------999998999999999999999977049999587589999767628960
Q 003694 519 VYEYMENGSLEDRLYRKNN-------------TPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLV 585 (802)
Q Consensus 519 V~Ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDLKp~NILld~~~~ 585 (802)
|||||++|+|.++|..... ...++|..+++|+.||+.||.|||+.+ ||||||||+||||+.++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGC
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCCC
T ss_conf 99818999499999862765433332211112468999999999999999999998689---977873623068879997
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCHHHHHHC
Q ss_conf 279320341013699996434333568755755679521125987875540338999999972-8997432200244310
Q 003694 586 SKIGDVGLSTMLNSDPSFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLT-AKPAIAITHKVETAID 664 (802)
Q Consensus 586 ~KI~DFGla~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~sDv~SlGvil~ellt-g~~p~~~~~~~~~~~~ 664 (802)
+||+|||+|+.+..... ........||+.|||||++.++.|+.++|||||||+||||+| |++||......
T Consensus 184 ~Ki~DFGlar~~~~~~~----~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~----- 254 (308)
T 4gt4_A 184 VKISDLGLFREVYAADY----YKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ----- 254 (308)
T ss_dssp EEECCSCCBCGGGGGGC----BCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH-----
T ss_pred EEECCCCCCEECCCCCC----EEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH-----
T ss_conf 89887602023367774----047345125776569899827999963000157999999996899999998999-----
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 0026887532079999689999999999953012689986211203578878
Q 003694 665 EDNLAEILDAQAGDWPIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERL 716 (802)
Q Consensus 665 ~~~l~~~ld~~~~~~p~~~~~~l~~li~~Cl~~~p~~RP~~~~~v~~~L~~l 716 (802)
..+..+........|..++..+.+|+.+||+.+|.+||++. +|+..|+.+
T Consensus 255 -~~~~~i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~-ei~~~L~a~ 304 (308)
T 4gt4_A 255 -DVVEMIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFK-DIHSRLRAW 304 (308)
T ss_dssp -HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHTS
T ss_pred -HHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHC
T ss_conf -99999981998999620369999999997587965792999-999999853
No 5
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=396.62 Aligned_cols=245 Identities=23% Similarity=0.343 Sum_probs=206.3
Q ss_pred CCCCCCCEECCCCCEEEEEEEEC--CEEEEEEEECCCC--CCCHHHHHHHHHHHHHCCCCCEEEECCEECCCC--EEEEE
Q ss_conf 18744501147771899999989--9389999971568--300698999999998269991544414142887--28999
Q 003694 448 LSFSENLRIGMGGYGTVYKGTFH--HTFAAVKVLQSKG--NIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CLVYE 521 (802)
Q Consensus 448 ~~f~~~~~IG~G~~g~Vyk~~~~--~~~vAvK~l~~~~--~~~~~~~~~Ei~iL~~l~Hpniv~l~g~~~~~~--~lV~E 521 (802)
++|....+||+|+||.||+|.+. +..||||++.... ......|.+|+.+|++++|||||++++++.+.. |||||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred ECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCEEEEEEECCCCCCCCCC
Q ss_conf 72699977896411899999989999999999999999770499995875899997676289602793203410136999
Q 003694 522 YMENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVSKIGDVGLSTMLNSDP 601 (802)
Q Consensus 522 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDLKp~NILld~~~~~KI~DFGla~~~~~~~ 601 (802)
|++||+|.++|.... ...+++.....|+.||+.||.|||+.+ |+||||||+||||+.++.+||+|||+|+.+....
T Consensus 104 y~~gg~L~~~i~~~~-~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 104 YCEGGDLFKRINAQK-GVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp CCTTCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred CCCCCCHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECCCC
T ss_conf 889983999999738-999978999999999999999999899---1513597899798789998976465214406885
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCCH
Q ss_conf 96434333568755755679521125987875540338999999972899743220024431000268875320799996
Q 003694 602 SFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILDAQAGDWPI 681 (802)
Q Consensus 602 ~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~sDv~SlGvil~elltg~~p~~~~~~~~~~~~~~~l~~~ld~~~~~~p~ 681 (802)
...+..+||+.|||||++.+..|+.++|||||||+||||+||++||......+ .+..++.......+.
T Consensus 180 ------~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~------~~~~i~~~~~~~~~~ 247 (350)
T 4b9d_A 180 ------ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKN------LVLKIISGSFPPVSL 247 (350)
T ss_dssp ------HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH------HHHHHHHTCCCCCCT
T ss_pred ------CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHCCCCCCCCC
T ss_conf ------41014578836039999879998959999999999999997879989969999------999998089999975
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 899999999999530126899862112
Q 003694 682 KETKELAALGLSCAELRRKDRPDLKNQ 708 (802)
Q Consensus 682 ~~~~~l~~li~~Cl~~~p~~RP~~~~~ 708 (802)
..+.++.+|+.+||+.||.+||++.+.
T Consensus 248 ~~s~~~~~li~~~L~~dP~~R~s~~e~ 274 (350)
T 4b9d_A 248 HYSYDLRSLVSQLFKRNPRDRPSVNSI 274 (350)
T ss_dssp TSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHHH
T ss_conf 579999999999855896679089999
No 6
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=394.22 Aligned_cols=267 Identities=24% Similarity=0.353 Sum_probs=215.0
Q ss_pred CHHHHHHHHCCCCCCCEECCCCCEEEEEEEECC-------EEEEEEEECCCCC-CCHHHHHHHHHHHHHCCC-CCEEEEC
Q ss_conf 988999862187445011477718999999899-------3899999715683-006989999999982699-9154441
Q 003694 439 TWEEIESATLSFSENLRIGMGGYGTVYKGTFHH-------TFAAVKVLQSKGN-IQNKQFLQELEVLSKIRH-PHLLLLL 509 (802)
Q Consensus 439 ~~~ei~~~~~~f~~~~~IG~G~~g~Vyk~~~~~-------~~vAvK~l~~~~~-~~~~~~~~Ei~iL~~l~H-pniv~l~ 509 (802)
...+++...++|....+||+|+||.||+|.+.+ +.||||++..... .....|.+|+.+|.+++| ||||+++
T Consensus 55 ~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~ 134 (353)
T 4ase_A 55 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 134 (353)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred CCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 88551705799598209821789599999986888544775999999762358689999999999999757998487788
Q ss_pred CEECCC---CEEEEEECCCCCHHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
Q ss_conf 414288---7289997269997789641189-------------999998999999999999999977049999587589
Q 003694 510 GACPDH---GCLVYEYMENGSLEDRLYRKNN-------------TPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDM 573 (802)
Q Consensus 510 g~~~~~---~~lV~Ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDL 573 (802)
|+|.+. .+||||||++|+|.++|..... ...++|..+..|+.||+.||.|||+.+ ||||||
T Consensus 135 g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRDL 211 (353)
T 4ase_A 135 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDL 211 (353)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCC
T ss_pred EEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCC
T ss_conf 99994697799999838989799999743566654333410110356899999999999999987676278---435746
Q ss_pred CCCCEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCC
Q ss_conf 999767628960279320341013699996434333568755755679521125987875540338999999972-8997
Q 003694 574 KPGNILLDHNLVSKIGDVGLSTMLNSDPSFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLT-AKPA 652 (802)
Q Consensus 574 Kp~NILld~~~~~KI~DFGla~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~sDv~SlGvil~ellt-g~~p 652 (802)
||+|||++.++.+||+|||+|+.+....... .....+||+.|||||++.++.|+.++|||||||+||||+| |++|
T Consensus 212 K~~NILl~~~~~vKi~DFGlar~~~~~~~~~----~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~P 287 (353)
T 4ase_A 212 AARNILLSEKNVVKICDFGLARDIYKDPDYV----RKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP 287 (353)
T ss_dssp SGGGEEECGGGCEEECCCGGGSCTTTCTTSE----EETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCS
T ss_pred CCCCEEECCCCCEEECCCHHHHHCCCCCCCE----EECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCC
T ss_conf 7211305799978979654322245688720----325401466656989994699997553740689999998189999
Q ss_pred CCCCCHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 432200244310002688753207999968999999999995301268998621120357887897
Q 003694 653 IAITHKVETAIDEDNLAEILDAQAGDWPIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERLKE 718 (802)
Q Consensus 653 ~~~~~~~~~~~~~~~l~~~ld~~~~~~p~~~~~~l~~li~~Cl~~~p~~RP~~~~~v~~~L~~l~~ 718 (802)
|......+. ....+........|..+++++.+|+.+||+.+|.+||++. +++..|+.+..
T Consensus 288 f~~~~~~~~-----~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~-eil~~L~~llq 347 (353)
T 4ase_A 288 YPGVKIDEE-----FCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFS-ELVEHLGNLLQ 347 (353)
T ss_dssp STTCCCSHH-----HHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHHHHH
T ss_pred CCCCCHHHH-----HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHH
T ss_conf 999898999-----9999973898888865789999999997686966793999-99999999998
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=392.41 Aligned_cols=241 Identities=20% Similarity=0.315 Sum_probs=203.6
Q ss_pred CCCCCCCEECCCCCEEEEEEEEC--CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCEECCCC--EEEEEEC
Q ss_conf 18744501147771899999989--9389999971568300698999999998269991544414142887--2899972
Q 003694 448 LSFSENLRIGMGGYGTVYKGTFH--HTFAAVKVLQSKGNIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CLVYEYM 523 (802)
Q Consensus 448 ~~f~~~~~IG~G~~g~Vyk~~~~--~~~vAvK~l~~~~~~~~~~~~~Ei~iL~~l~Hpniv~l~g~~~~~~--~lV~Ey~ 523 (802)
..|....+||+|+||.||+|.+. +..||||++........+.+.+|+.+|+.++|||||+++++|.+.. |||||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 84386169624818489999999999899999986255468999999999998579989871689999899999999698
Q ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 69997789641189999998999999999999999977049999587589999767628960279320341013699996
Q 003694 524 ENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVSKIGDVGLSTMLNSDPSF 603 (802)
Q Consensus 524 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDLKp~NILld~~~~~KI~DFGla~~~~~~~~~ 603 (802)
+||+|.+++... .+++..+..|+.||+.||.|||+.+ ||||||||+||||+.++.+||+|||+|+.+.....
T Consensus 231 ~gG~L~~~i~~~----~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~- 302 (423)
T 4fie_A 231 EGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 302 (423)
T ss_dssp TTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC-
T ss_pred CCCCHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 998289887616----9899999999999999999999889---04465787778985899989803726547778876-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHHC--CCCCH
Q ss_conf 4343335687557556795211259878755403389999999728997432200244310002688753207--99996
Q 003694 604 VSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILDAQA--GDWPI 681 (802)
Q Consensus 604 ~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~sDv~SlGvil~elltg~~p~~~~~~~~~~~~~~~l~~~ld~~~--~~~p~ 681 (802)
.....+||+.|||||++.+..|+.++|||||||++|||++|++||......+. +..+..... ...+.
T Consensus 303 -----~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~------~~~i~~~~~~~~~~~~ 371 (423)
T 4fie_A 303 -----RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA------MKMIRDNLPPRLKNLH 371 (423)
T ss_dssp -----CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HHHHHHSCCCCCSCTT
T ss_pred -----CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH------HHHHHCCCCCCCCCCC
T ss_conf -----43466647472799997799999689999999999999978799898699999------9999727998876501
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89999999999953012689986211
Q 003694 682 KETKELAALGLSCAELRRKDRPDLKN 707 (802)
Q Consensus 682 ~~~~~l~~li~~Cl~~~p~~RP~~~~ 707 (802)
..+..+.+|+.+||..||.+||++.+
T Consensus 372 ~~s~~~~dli~~~L~~dP~~R~ta~e 397 (423)
T 4fie_A 372 KVSPSLKGFLDRLLVRDPAQRATAAE 397 (423)
T ss_dssp SSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHH
T ss_conf 29999999999986789568909999
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=391.39 Aligned_cols=241 Identities=20% Similarity=0.318 Sum_probs=203.2
Q ss_pred CCCCCCCEECCCCCEEEEEEEEC--CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCEECCCC--EEEEEEC
Q ss_conf 18744501147771899999989--9389999971568300698999999998269991544414142887--2899972
Q 003694 448 LSFSENLRIGMGGYGTVYKGTFH--HTFAAVKVLQSKGNIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CLVYEYM 523 (802)
Q Consensus 448 ~~f~~~~~IG~G~~g~Vyk~~~~--~~~vAvK~l~~~~~~~~~~~~~Ei~iL~~l~Hpniv~l~g~~~~~~--~lV~Ey~ 523 (802)
..|....+||+|+||.||+|.+. +..||||++........+.+.+|+.+|++++|||||+++++|.+.. |||||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 69997789641189999998999999999999999977049999587589999767628960279320341013699996
Q 003694 524 ENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVSKIGDVGLSTMLNSDPSF 603 (802)
Q Consensus 524 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDLKp~NILld~~~~~KI~DFGla~~~~~~~~~ 603 (802)
+||+|.+++.+. .+++..+..|+.||+.||.|||+.+ |+||||||+||||+.++.+||+|||+|+.+.....
T Consensus 154 ~gg~L~~~l~~~----~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~- 225 (346)
T 4fih_A 154 EGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 225 (346)
T ss_dssp TTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC-
T ss_pred CCCCHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 998089998718----9899999999999999999999888---35562788997887999889902757536678877-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHHCC--CCCH
Q ss_conf 43433356875575567952112598787554033899999997289974322002443100026887532079--9996
Q 003694 604 VSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILDAQAG--DWPI 681 (802)
Q Consensus 604 ~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~sDv~SlGvil~elltg~~p~~~~~~~~~~~~~~~l~~~ld~~~~--~~p~ 681 (802)
.....+||+.|||||++.+..|+.++|||||||++|||+||++||......+. +..+...... ..+.
T Consensus 226 -----~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~------~~~i~~~~~~~~~~~~ 294 (346)
T 4fih_A 226 -----RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA------MKMIRDNLPPRLKNLH 294 (346)
T ss_dssp -----CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HHHHHHSSCCCCSCGG
T ss_pred -----CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH------HHHHHCCCCCCCCCCC
T ss_conf -----53465627582799997799999689999999999999978799898599999------9999717999887502
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89999999999953012689986211
Q 003694 682 KETKELAALGLSCAELRRKDRPDLKN 707 (802)
Q Consensus 682 ~~~~~l~~li~~Cl~~~p~~RP~~~~ 707 (802)
..+.++.+|+.+||+.||.+||++.+
T Consensus 295 ~~s~~~~dli~~~L~~dP~~R~ta~e 320 (346)
T 4fih_A 295 KVSPSLKGFLDRLLVRDPAQRATAAE 320 (346)
T ss_dssp GSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHH
T ss_conf 29999999999986799568909999
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=387.31 Aligned_cols=253 Identities=18% Similarity=0.184 Sum_probs=204.2
Q ss_pred HCCCCCCCEECCCCCEEEEEEEEC--CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCEECCCC--EEEEEE
Q ss_conf 218744501147771899999989--9389999971568300698999999998269991544414142887--289997
Q 003694 447 TLSFSENLRIGMGGYGTVYKGTFH--HTFAAVKVLQSKGNIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CLVYEY 522 (802)
Q Consensus 447 ~~~f~~~~~IG~G~~g~Vyk~~~~--~~~vAvK~l~~~~~~~~~~~~~Ei~iL~~l~Hpniv~l~g~~~~~~--~lV~Ey 522 (802)
...|....+||+|+||.||+|.+. +..||||+++.... +.+|+.+|+.++|||||+++++|.+.. ||||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 3351768685138780999999889998999999788886-----99999999857998999399999989999999966
Q ss_pred CCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC-EEEEEEECCCCCCCCCC
Q ss_conf 26999778964118999999899999999999999997704999958758999976762896-02793203410136999
Q 003694 523 MENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNL-VSKIGDVGLSTMLNSDP 601 (802)
Q Consensus 523 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDLKp~NILld~~~-~~KI~DFGla~~~~~~~ 601 (802)
|+||+|.++|...+ .+++..+..|+.||+.||.|||+.+ |+||||||+||||+.++ .+||+|||+|+.+....
T Consensus 132 ~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~ 205 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG---CLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205 (336)
T ss_dssp CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred CCCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHCC---CEECCCCHHHEEEECCCCEEEEEECCCCEECCCCC
T ss_conf 59986999998769---9999999999999999999999889---04261677887995899979996278776856787
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHH--CCCC
Q ss_conf 96434333568755755679521125987875540338999999972899743220024431000268875320--7999
Q 003694 602 SFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILDAQ--AGDW 679 (802)
Q Consensus 602 ~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~sDv~SlGvil~elltg~~p~~~~~~~~~~~~~~~l~~~ld~~--~~~~ 679 (802)
.. .........+||+.|||||++.+..|+.++|||||||++|||+||++||....... .+..+.... ....
T Consensus 206 ~~-~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~------~~~~i~~~~~~~~~~ 278 (336)
T 4g3f_A 206 LG-KSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGP------LCLKIASEPPPIREI 278 (336)
T ss_dssp ---------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSC------CHHHHHHSCCGGGGS
T ss_pred CC-CCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHCCCCCCHHC
T ss_conf 65-40221785455802008999889998908999999999999997869989989999------999998089980025
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 968999999999995301268998621120357887897
Q 003694 680 PIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERLKE 718 (802)
Q Consensus 680 p~~~~~~l~~li~~Cl~~~p~~RP~~~~~v~~~L~~l~~ 718 (802)
|...+..+.+|+.+||+.+|.+||++. +++..|.....
T Consensus 279 ~~~~s~~~~~li~~~L~~dP~~R~sa~-el~~~l~~~l~ 316 (336)
T 4g3f_A 279 PPSCAPLTAQAIQEGLRKEPVHRASAM-ELRRKVGKALQ 316 (336)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHH
T ss_conf 866799999999997628976895999-99999999975
No 10
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=386.13 Aligned_cols=243 Identities=26% Similarity=0.333 Sum_probs=205.8
Q ss_pred CCCCCCCEECCCCCEEEEEEEEC--CEEEEEEEECCCC---CCCHHHHHHHHHHHHHCCCCCEEEECCEECCCC--EEEE
Q ss_conf 18744501147771899999989--9389999971568---300698999999998269991544414142887--2899
Q 003694 448 LSFSENLRIGMGGYGTVYKGTFH--HTFAAVKVLQSKG---NIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CLVY 520 (802)
Q Consensus 448 ~~f~~~~~IG~G~~g~Vyk~~~~--~~~vAvK~l~~~~---~~~~~~~~~Ei~iL~~l~Hpniv~l~g~~~~~~--~lV~ 520 (802)
.+|.....||+|+||.||+|... +..||+|++.... ......+.+|+.+|++++|||||++++++.+.. ||||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
T ss_conf 23689889831648499999999999899999988888779789999999999998679989891999997389899999
Q ss_pred EECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCEEEEEEECCCCCCCCC
Q ss_conf 97269997789641189999998999999999999999977049999587589999767628960279320341013699
Q 003694 521 EYMENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVSKIGDVGLSTMLNSD 600 (802)
Q Consensus 521 Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDLKp~NILld~~~~~KI~DFGla~~~~~~ 600 (802)
||++||+|.+++.+.+ .+++.....|+.||+.||.|||+.+ |+||||||+|||++.++.+||+|||+|+.+...
T Consensus 112 Ey~~gG~L~~~i~~~~---~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIG---SFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp CCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ECCCCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 6489989999998749---9999999999999999999999887---826878789969858988899876875025778
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCC
Q ss_conf 99643433356875575567952112598787554033899999997289974322002443100026887532079999
Q 003694 601 PSFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILDAQAGDWP 680 (802)
Q Consensus 601 ~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~sDv~SlGvil~elltg~~p~~~~~~~~~~~~~~~l~~~ld~~~~~~p 680 (802)
... ......+||+.|||||++.+..|+.++|||||||++|+|+||++||...+..+ .+..++. ....+|
T Consensus 186 ~~~----~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~------~~~~i~~-~~~~~p 254 (311)
T 4aw0_A 186 SKQ----ARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGL------IFAKIIK-LEYDFP 254 (311)
T ss_dssp TTC----CCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHH-TCCCCC
T ss_pred CCC----CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHC-CCCCCC
T ss_conf 776----54367556803079989768999968989989999999974989989979999------9999971-999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 689999999999953012689986211
Q 003694 681 IKETKELAALGLSCAELRRKDRPDLKN 707 (802)
Q Consensus 681 ~~~~~~l~~li~~Cl~~~p~~RP~~~~ 707 (802)
...+.++.+|+.+||+.||.+||++.+
T Consensus 255 ~~~s~~~~dli~~lL~~dp~~R~t~~e 281 (311)
T 4aw0_A 255 EKFFPKARDLVEKLLVLDATKRLGCEE 281 (311)
T ss_dssp TTCCHHHHHHHHHHSCSSGGGSTTSGG
T ss_pred CCCCHHHHHHHHHHCCCCHHHCCCHHH
T ss_conf 656999999999976289757809679
Done!