Query 003695
Match_columns 802
No_of_seqs 388 out of 1799
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 04:16:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1718 Dual specificity phosp 100.0 1.3E-30 2.9E-35 254.5 14.8 145 121-266 15-159 (198)
2 smart00195 DSPc Dual specifici 100.0 3.5E-29 7.5E-34 237.5 17.4 138 123-261 1-138 (138)
3 KOG1716 Dual specificity phosp 100.0 2.1E-28 4.6E-33 261.4 18.5 147 120-266 72-220 (285)
4 cd00127 DSPc Dual specificity 99.9 5.6E-27 1.2E-31 221.0 16.9 137 123-259 2-139 (139)
5 KOG1717 Dual specificity phosp 99.9 8.5E-28 1.8E-32 248.4 11.9 141 123-264 172-314 (343)
6 PF00782 DSPc: Dual specificit 99.9 3.2E-27 7E-32 222.1 14.5 131 130-261 1-133 (133)
7 PRK12361 hypothetical protein; 99.9 8.7E-23 1.9E-27 235.6 17.2 141 121-262 93-237 (547)
8 KOG0443 Actin regulatory prote 99.9 1.1E-22 2.4E-27 234.3 13.1 145 269-423 513-659 (827)
9 PTZ00242 protein tyrosine phos 99.8 5.1E-19 1.1E-23 175.9 15.0 144 120-265 8-161 (166)
10 KOG1719 Dual specificity phosp 99.8 1.3E-18 2.9E-23 168.7 12.1 140 125-264 27-172 (183)
11 PTZ00393 protein tyrosine phos 99.8 1.1E-17 2.3E-22 174.1 15.1 123 139-264 107-231 (241)
12 KOG0443 Actin regulatory prote 99.7 1.5E-17 3.2E-22 192.5 10.8 143 273-421 139-294 (827)
13 KOG1720 Protein tyrosine phosp 99.6 3.5E-14 7.7E-19 144.2 14.1 117 142-260 88-206 (225)
14 COG2453 CDC14 Predicted protei 99.5 4.8E-14 1E-18 141.8 12.2 95 165-262 70-165 (180)
15 smart00262 GEL Gelsolin homolo 99.5 2.3E-13 5.1E-18 121.1 9.1 75 293-367 14-89 (90)
16 KOG0444 Cytoskeletal regulator 99.4 4.9E-13 1.1E-17 152.1 8.2 149 269-422 618-777 (1255)
17 PF05706 CDKN3: Cyclin-depende 99.3 1.3E-11 2.7E-16 122.7 8.6 107 128-235 41-168 (168)
18 PF03162 Y_phosphatase2: Tyros 99.2 3.1E-11 6.7E-16 120.3 9.0 117 121-240 5-129 (164)
19 KOG0444 Cytoskeletal regulator 99.2 1.8E-12 3.9E-17 147.5 -0.8 144 268-422 1036-1189(1255)
20 TIGR01244 conserved hypothetic 99.2 3.7E-10 8.1E-15 108.8 13.5 117 123-246 2-129 (135)
21 KOG0445 Actin regulatory prote 99.1 9.1E-11 2E-15 134.0 8.2 148 272-452 644-799 (919)
22 PF00626 Gelsolin: Gelsolin re 99.1 7.7E-11 1.7E-15 101.1 5.2 69 294-362 7-76 (76)
23 KOG2836 Protein tyrosine phosp 99.0 4.5E-09 9.7E-14 100.9 12.3 116 140-261 33-152 (173)
24 smart00404 PTPc_motif Protein 98.9 8.8E-09 1.9E-13 91.7 10.1 88 169-256 4-100 (105)
25 smart00012 PTPc_DSPc Protein t 98.9 8.8E-09 1.9E-13 91.7 10.1 88 169-256 4-100 (105)
26 PF04273 DUF442: Putative phos 98.7 4.8E-08 1E-12 91.7 9.3 92 123-220 2-104 (110)
27 PLN02727 NAD kinase 98.6 1.3E-07 2.8E-12 113.6 11.1 99 129-230 262-370 (986)
28 cd00047 PTPc Protein tyrosine 98.5 3.7E-07 8E-12 94.3 9.8 82 176-257 139-227 (231)
29 smart00194 PTPc Protein tyrosi 98.4 8.3E-07 1.8E-11 93.4 9.3 71 187-257 178-254 (258)
30 COG5350 Predicted protein tyro 98.4 1.6E-06 3.5E-11 85.2 9.6 113 141-254 25-147 (172)
31 KOG2283 Clathrin coat dissocia 98.3 3.6E-06 7.9E-11 95.6 10.5 148 119-270 11-182 (434)
32 PF13350 Y_phosphatase3: Tyros 98.2 4.4E-06 9.6E-11 82.6 9.2 110 126-236 16-158 (164)
33 KOG1572 Predicted protein tyro 98.1 1.4E-05 3E-10 83.6 10.7 117 121-240 58-186 (249)
34 PRK15375 pathogenicity island 98.1 1E-05 2.3E-10 92.6 10.3 88 175-262 431-529 (535)
35 COG3453 Uncharacterized protei 98.1 3.9E-05 8.4E-10 73.0 11.8 113 122-241 2-125 (130)
36 KOG0445 Actin regulatory prote 98.0 8E-06 1.7E-10 94.6 7.0 96 272-373 223-325 (919)
37 PF04179 Init_tRNA_PT: Initiat 97.9 5.5E-05 1.2E-09 86.7 11.8 134 125-258 291-449 (451)
38 PF00102 Y_phosphatase: Protei 97.9 2.8E-05 6.1E-10 79.1 8.0 71 187-257 152-231 (235)
39 PHA02742 protein tyrosine phos 97.7 0.00017 3.8E-09 78.6 10.3 54 201-254 229-287 (303)
40 PF14566 PTPlike_phytase: Inos 97.7 8.5E-05 1.8E-09 73.1 6.8 59 165-225 90-148 (149)
41 PHA02746 protein tyrosine phos 97.6 0.00021 4.5E-09 78.8 9.1 55 202-256 248-307 (323)
42 PHA02747 protein tyrosine phos 97.6 0.00028 6E-09 77.4 9.7 54 202-255 230-288 (312)
43 PHA02740 protein tyrosine phos 97.5 0.00039 8.4E-09 75.9 10.3 55 201-255 221-280 (298)
44 COG2365 Protein tyrosine/serin 97.5 0.00014 3.1E-09 77.3 5.7 122 128-249 53-184 (249)
45 PHA02738 hypothetical protein; 97.4 0.00069 1.5E-08 74.6 9.5 56 201-256 227-287 (320)
46 KOG2386 mRNA capping enzyme, g 97.3 0.00046 9.9E-09 77.5 7.9 98 164-261 83-184 (393)
47 KOG0792 Protein tyrosine phosp 97.0 0.0023 5E-08 78.3 9.0 81 175-255 1036-1122(1144)
48 COG5599 PTP2 Protein tyrosine 96.9 0.0022 4.8E-08 68.6 7.6 84 175-262 193-293 (302)
49 KOG0790 Protein tyrosine phosp 96.5 0.0037 7.9E-08 70.6 5.4 113 140-255 372-513 (600)
50 KOG0789 Protein tyrosine phosp 96.3 0.015 3.2E-07 65.1 9.0 57 200-256 298-360 (415)
51 KOG0260 RNA polymerase II, lar 95.3 0.094 2E-06 65.3 11.0 9 65-73 772-780 (1605)
52 KOG0791 Protein tyrosine phosp 95.0 0.08 1.7E-06 59.2 8.2 63 200-262 286-353 (374)
53 KOG0260 RNA polymerase II, lar 94.7 0.18 4E-06 62.9 10.9 12 226-238 1025-1036(1605)
54 KOG1984 Vesicle coat complex C 93.9 0.17 3.6E-06 61.7 8.2 35 294-328 880-914 (1007)
55 PF14671 DSPn: Dual specificit 92.2 0.33 7.1E-06 48.1 6.3 101 126-242 4-111 (141)
56 PF00626 Gelsolin: Gelsolin re 89.6 0.28 6E-06 41.9 2.7 33 718-757 5-37 (76)
57 COG5028 Vesicle coat complex C 88.8 0.96 2.1E-05 54.8 7.2 32 297-328 738-769 (861)
58 PTZ00395 Sec24-related protein 87.1 2.2 4.7E-05 54.9 9.1 35 294-328 1433-1467(1560)
59 KOG0793 Protein tyrosine phosp 86.6 1.4 3E-05 53.0 6.6 62 200-261 926-994 (1004)
60 KOG4228 Protein tyrosine phosp 86.4 1.2 2.6E-05 56.0 6.3 58 188-245 713-779 (1087)
61 smart00262 GEL Gelsolin homolo 85.8 0.66 1.4E-05 41.2 2.8 30 722-758 17-46 (90)
62 KOG4471 Phosphatidylinositol 3 82.5 2.1 4.6E-05 50.8 5.7 39 187-225 360-399 (717)
63 KOG1985 Vesicle coat complex C 82.1 2.9 6.3E-05 51.3 6.8 32 296-327 764-795 (887)
64 KOG4228 Protein tyrosine phosp 79.5 2.6 5.7E-05 53.1 5.5 46 201-246 1018-1068(1087)
65 PLN00162 transport protein sec 68.2 15 0.00033 45.6 8.1 70 295-364 635-720 (761)
66 PF06602 Myotub-related: Myotu 67.5 11 0.00024 42.6 6.3 23 198-220 228-250 (353)
67 cd01518 RHOD_YceA Member of th 60.1 27 0.00058 31.4 6.2 29 199-230 59-87 (101)
68 KOG1089 Myotubularin-related p 57.2 15 0.00033 43.9 5.2 32 190-221 332-364 (573)
69 COG0607 PspE Rhodanese-related 54.2 26 0.00056 31.3 5.2 69 143-226 14-84 (110)
70 PLN02160 thiosulfate sulfurtra 46.6 28 0.00061 33.8 4.4 30 198-230 78-107 (136)
71 cd01533 4RHOD_Repeat_2 Member 44.7 41 0.00088 30.7 4.9 27 200-229 65-91 (109)
72 PRK01415 hypothetical protein; 44.5 40 0.00086 36.5 5.5 28 199-229 169-196 (247)
73 PF00581 Rhodanese: Rhodanese- 37.7 1.1E+02 0.0025 27.0 6.7 82 146-230 10-98 (113)
74 cd01448 TST_Repeat_1 Thiosulfa 34.5 54 0.0012 30.3 4.1 31 198-230 76-106 (122)
75 PF03668 ATP_bind_2: P-loop AT 34.3 47 0.001 36.7 4.2 19 203-221 244-262 (284)
76 PRK00142 putative rhodanese-re 33.2 56 0.0012 36.4 4.6 27 200-229 170-196 (314)
77 smart00400 ZnF_CHCC zinc finge 33.2 39 0.00085 27.8 2.6 32 205-238 23-54 (55)
78 cd01528 RHOD_2 Member of the R 32.6 87 0.0019 28.0 5.0 28 200-230 57-84 (101)
79 PF03861 ANTAR: ANTAR domain; 32.0 66 0.0014 26.6 3.8 26 216-241 15-40 (56)
80 cd01523 RHOD_Lact_B Member of 30.0 60 0.0013 29.0 3.5 28 199-229 59-86 (100)
81 TIGR03865 PQQ_CXXCW PQQ-depend 29.2 89 0.0019 31.3 4.9 30 199-230 114-143 (162)
82 PRK10886 DnaA initiator-associ 28.7 1.1E+02 0.0024 31.9 5.6 39 183-224 23-61 (196)
83 cd01520 RHOD_YbbB Member of th 28.0 96 0.0021 29.4 4.7 30 198-229 83-112 (128)
84 PRK05416 glmZ(sRNA)-inactivati 27.6 62 0.0013 35.7 3.7 37 185-221 222-265 (288)
85 PRK05320 rhodanese superfamily 27.5 95 0.0021 33.6 5.1 27 200-229 174-200 (257)
86 KOG0235 Phosphoglycerate mutas 26.1 2E+02 0.0042 30.8 6.9 52 179-236 130-185 (214)
87 KOG1015 Transcription regulato 26.0 52 0.0011 41.9 3.0 157 175-355 669-830 (1567)
88 PF05763 DUF835: Protein of un 25.7 1.6E+02 0.0036 29.0 5.9 52 182-248 59-110 (136)
89 cd01522 RHOD_1 Member of the R 25.3 97 0.0021 28.9 4.1 20 198-218 61-80 (117)
90 PF01807 zf-CHC2: CHC2 zinc fi 24.2 73 0.0016 29.4 3.0 37 205-243 54-90 (97)
91 PRK05728 DNA polymerase III su 23.2 99 0.0021 30.5 3.9 25 186-210 14-38 (142)
92 cd01534 4RHOD_Repeat_3 Member 22.8 1E+02 0.0022 27.4 3.6 27 200-229 55-81 (95)
93 PHA02540 61 DNA primase; Provi 21.3 2.3E+02 0.0049 32.3 6.7 38 203-243 53-91 (337)
94 COG2927 HolC DNA polymerase II 20.3 1.2E+02 0.0026 30.5 3.8 22 188-209 16-37 (144)
No 1
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=1.3e-30 Score=254.50 Aligned_cols=145 Identities=32% Similarity=0.510 Sum_probs=136.5
Q ss_pred ccceeecCCeEECChhhhcCHHHHHhCCCcEEEEcccCCCCCccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhc
Q 003695 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ 200 (802)
Q Consensus 121 ~~iSeI~p~LYLGs~~~A~d~e~Lk~lGIt~VLNL~~e~~p~~~~~~i~yl~IPI~D~~~~dL~~~L~eav~fIe~a~~~ 200 (802)
..+++|++.|||++--.|.+..+|+++|||+|||++.+. |+..-.++.|..+|+.|.+...+.++|+.+.+.|+....+
T Consensus 15 ~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~-pn~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~ 93 (198)
T KOG1718|consen 15 GGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEV-PNTSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMR 93 (198)
T ss_pred cchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCC-CCccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhc
Confidence 458899999999977788899999999999999987665 6666788999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCcccCCchhHHHHHHHHHHhccCC
Q 003695 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAMP 266 (802)
Q Consensus 201 ggrVLVHC~aGvSRSaTVViAYLM~~~g~SledAi~~VRs~RP~I~PN~gF~~QL~e~EkkL~~~~ 266 (802)
||++||||.+|+|||+++|+||||++.+|++.||+.+||++||+|.||.||++||..||++|++..
T Consensus 94 gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~ 159 (198)
T KOG1718|consen 94 GGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNA 159 (198)
T ss_pred CCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999997753
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.96 E-value=3.5e-29 Score=237.50 Aligned_cols=138 Identities=38% Similarity=0.626 Sum_probs=129.0
Q ss_pred ceeecCCeEECChhhhcCHHHHHhCCCcEEEEcccCCCCCccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCC
Q 003695 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGG 202 (802)
Q Consensus 123 iSeI~p~LYLGs~~~A~d~e~Lk~lGIt~VLNL~~e~~p~~~~~~i~yl~IPI~D~~~~dL~~~L~eav~fIe~a~~~gg 202 (802)
+++|.|+||+|+.+.+.+.+.|+++||++||||+.+.. .....++.|+++|+.|....++...|..+++||+.++++|+
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~-~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVP-NLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGG 79 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCC-CCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999999999999987543 34567899999999998778888999999999999999999
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCcccCCchhHHHHHHHHHH
Q 003695 203 RVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKR 261 (802)
Q Consensus 203 rVLVHC~aGvSRSaTVViAYLM~~~g~SledAi~~VRs~RP~I~PN~gF~~QL~e~Ekk 261 (802)
+|||||.+|+|||+++++||||+.+|+++++|+++|+.+||.+.||.+|++||..||++
T Consensus 80 ~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 80 KVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred eEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999974
No 3
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=2.1e-28 Score=261.36 Aligned_cols=147 Identities=41% Similarity=0.670 Sum_probs=135.9
Q ss_pred cccceeecCCeEECChhhhcCHHHHHhCCCcEEEEcccCCCCC-ccC-CCcEEEEEEccCCCCCchHHHHHHHHHHHHHH
Q 003695 120 DKECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE-YFK-GDLVYKTLWLQDSPSEDITSILYDVFDYFEDV 197 (802)
Q Consensus 120 ~~~iSeI~p~LYLGs~~~A~d~e~Lk~lGIt~VLNL~~e~~p~-~~~-~~i~yl~IPI~D~~~~dL~~~L~eav~fIe~a 197 (802)
...+.+|.|+||+|+..++.+.+.|+++||++|||+....... +.. ..++|+++++.|.+..+|..+|+++++||+.+
T Consensus 72 ~~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a 151 (285)
T KOG1716|consen 72 GNPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKA 151 (285)
T ss_pred cCCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999987654332 233 48999999999999999999999999999999
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCcccCCchhHHHHHHHHHHhccCC
Q 003695 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAMP 266 (802)
Q Consensus 198 ~~~ggrVLVHC~aGvSRSaTVViAYLM~~~g~SledAi~~VRs~RP~I~PN~gF~~QL~e~EkkL~~~~ 266 (802)
+.+|++|||||.+|+|||+|++|||||++++|++++|+++|+.+|+++.||.||+.||++||+.+....
T Consensus 152 ~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~ 220 (285)
T KOG1716|consen 152 REKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKS 220 (285)
T ss_pred HhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999997654
No 4
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.95 E-value=5.6e-27 Score=221.05 Aligned_cols=137 Identities=42% Similarity=0.682 Sum_probs=128.0
Q ss_pred ceeecCCeEECChhhhcCHHHHHhCCCcEEEEcccCCCC-CccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcC
Q 003695 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP-EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQG 201 (802)
Q Consensus 123 iSeI~p~LYLGs~~~A~d~e~Lk~lGIt~VLNL~~e~~p-~~~~~~i~yl~IPI~D~~~~dL~~~L~eav~fIe~a~~~g 201 (802)
+++|.++||+|+.+.+.+.+.|+++||++||||+..... .....++.|+++|+.|....++...++.+++||+..++++
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~ 81 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKG 81 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999875543 3446789999999999988888889999999999999999
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCcccCCchhHHHHHHHH
Q 003695 202 GRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQ 259 (802)
Q Consensus 202 grVLVHC~aGvSRSaTVViAYLM~~~g~SledAi~~VRs~RP~I~PN~gF~~QL~e~E 259 (802)
++|||||.+|+|||+++++||||+.+++++++|+++||++||.+.||.+|++||.+||
T Consensus 82 ~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 82 GKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999986
No 5
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.95 E-value=8.5e-28 Score=248.39 Aligned_cols=141 Identities=29% Similarity=0.576 Sum_probs=132.8
Q ss_pred ceeecCCeEECChhhhcCHHHHHhCCCcEEEEcccCCCCCccC--CCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhc
Q 003695 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFK--GDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ 200 (802)
Q Consensus 123 iSeI~p~LYLGs~~~A~d~e~Lk~lGIt~VLNL~~e~~p~~~~--~~i~yl~IPI~D~~~~dL~~~L~eav~fIe~a~~~ 200 (802)
+.+|+|+||||+..++.|.+.|+++||++|||++... |+.|+ .++.|++||+.|+...++.++|++|+.||++++.+
T Consensus 172 PV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnl-pn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk 250 (343)
T KOG1717|consen 172 PVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL-PNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSK 250 (343)
T ss_pred chhhccchhcccccccccHHHHHhcCceEEEecCCCC-cchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhcc
Confidence 5689999999999999999999999999999987654 66665 46899999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCcccCCchhHHHHHHHHHHhcc
Q 003695 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHA 264 (802)
Q Consensus 201 ggrVLVHC~aGvSRSaTVViAYLM~~~g~SledAi~~VRs~RP~I~PN~gF~~QL~e~EkkL~~ 264 (802)
+..|||||-+|+|||+||++||||.+..+++.+||++|+.++..|.||.+|+.||..||+.+..
T Consensus 251 ~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl 314 (343)
T KOG1717|consen 251 NCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGL 314 (343)
T ss_pred CCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999998743
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.95 E-value=3.2e-27 Score=222.11 Aligned_cols=131 Identities=37% Similarity=0.584 Sum_probs=122.2
Q ss_pred eEECChhhhcCHHHHHhCCCcEEEEcccCCCCC--ccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEE
Q 003695 130 IYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE--YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVH 207 (802)
Q Consensus 130 LYLGs~~~A~d~e~Lk~lGIt~VLNL~~e~~p~--~~~~~i~yl~IPI~D~~~~dL~~~L~eav~fIe~a~~~ggrVLVH 207 (802)
||||+.+.+. .+.|+++||++||||+.+.... ....++.|+++|+.|....++...|+.+++||+++.++|++||||
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVH 79 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVH 79 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEE
Confidence 7999999999 9999999999999998754331 345689999999999888889899999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCcccCCchhHHHHHHHHHH
Q 003695 208 CCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKR 261 (802)
Q Consensus 208 C~aGvSRSaTVViAYLM~~~g~SledAi~~VRs~RP~I~PN~gF~~QL~e~Ekk 261 (802)
|.+|+|||+++++||||++++|++++|+++|+.+||.+.||.+|++||.+||++
T Consensus 80 C~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 80 CKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp ESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred eCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999975
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.89 E-value=8.7e-23 Score=235.57 Aligned_cols=141 Identities=21% Similarity=0.299 Sum_probs=126.5
Q ss_pred ccceeecCCeEECChhhhcCHHHHHhCCCcEEEEcccCCCC---CccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHH
Q 003695 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP---EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDV 197 (802)
Q Consensus 121 ~~iSeI~p~LYLGs~~~A~d~e~Lk~lGIt~VLNL~~e~~p---~~~~~~i~yl~IPI~D~~~~dL~~~L~eav~fIe~a 197 (802)
..+++|.|+||||+.+.+.|.+.|+++||++||||+.+... .....+++|+++|+.|...+.+ .+|+++++||+++
T Consensus 93 ~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~-~~l~~a~~~i~~~ 171 (547)
T PRK12361 93 PAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTL-AQLNQAINWIHRQ 171 (547)
T ss_pred CcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcH-HHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999865432 2345678999999999877655 7899999999999
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhh-cCCCHHHHHHHHHHHcCcccCCchhHHHHHHHHHHh
Q 003695 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWR-EGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRV 262 (802)
Q Consensus 198 ~~~ggrVLVHC~aGvSRSaTVViAYLM~~-~g~SledAi~~VRs~RP~I~PN~gF~~QL~e~EkkL 262 (802)
+++|++|||||.+|+|||+++++||||++ .++++++|+++||++||.+.||.+++++|.+|.+..
T Consensus 172 ~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~ 237 (547)
T PRK12361 172 VRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQG 237 (547)
T ss_pred HHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999976 589999999999999999999999999999887654
No 8
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=99.88 E-value=1.1e-22 Score=234.29 Aligned_cols=145 Identities=22% Similarity=0.314 Sum_probs=122.7
Q ss_pred CccccceeeecCCCCCCCccccccccCCCcccCCCCCCeEEEecCCceEEEecCCCChhhhHHHHHHHHHHHHHhhcCCc
Q 003695 269 PNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEKAQGQ 348 (802)
Q Consensus 269 p~sv~RLYRVrg~S~~dpr~lVPk~ev~~sasSLNSrDcFILdt~s~IYVWiGk~Ss~~er~~ar~aA~~I~~~e~~~~~ 348 (802)
+..-.|||||+|..+++.+++ +++..+++|||.|||||+++..+|+|+|++|+..+++.|+..+..|. ..+
T Consensus 513 ~~~~t~LFqV~Gt~~~n~kAv----eV~~~A~SLNSsd~fvL~t~s~~ylW~G~gss~~e~e~A~~v~~~l~-----~~~ 583 (827)
T KOG0443|consen 513 PAPSTRLFQVQGTGPSNTKAV----EVPAVASSLNSSDCFVLKTGSSVYLWCGKGSSGDEREMAKRVLDLLK-----RCQ 583 (827)
T ss_pred CCCceEEEEEeccCcccceeE----eeccccccccccceEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHh-----cCC
Confidence 344579999999998988887 99999999999999999999999999999999955555555554443 245
Q ss_pred EEEecCCCChhHhHHHhcCCCCCCCCC-ccccccCCceeEEeecCCccEE-EeccCCCCcCCCCccceeeeccCCCC
Q 003695 349 ITSIKEGEEPLEFWDALVRGQFFADGC-NKEEVKNEQVSFSGSNKIATLM-QDGAGEIDEYDLDFELFHKALDGGVV 423 (802)
Q Consensus 349 I~vV~EG~Ep~eFW~aLGGk~~y~~~~-~~~~~~~~pRLF~cSnaSG~f~-eE~~~~f~QdDLd~E~v~~~~~gg~v 423 (802)
-..+.||+||++||++|||+.+|+... ........||||.|++..|.|+ +|+. .|+||||++||||.+|+|..|
T Consensus 584 ~~~v~EG~Ep~~FWe~LGGk~~Y~~sk~~~~~~~~~PrLF~Cs~~~g~f~~~EI~-~F~QdDL~tdDi~lLDt~~ev 659 (827)
T KOG0443|consen 584 STAVKEGSEPDEFWELLGGKAEYPSSKRLEEKPERDPRLFSCSNKTGSFVVEEIY-NFTQDDLMTDDIMLLDTWSEV 659 (827)
T ss_pred hhhhhcCCCchhhHHHcCCCCCCCcCccccccCCCCCcEEEEEecCCcEEEEEec-CcchhhccccceEEEecCceE
Confidence 678999999999999999999998744 4444578899999999999999 8885 999999999999988876543
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.80 E-value=5.1e-19 Score=175.85 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=116.9
Q ss_pred cccceeecCCeEECChhhh----cCHHHHHhCCCcEEEEcccCCCC-Ccc-CCCcEEEEEEccCCCCCchHHHHHHHHHH
Q 003695 120 DKECSRIADHIYLGSDAVA----KNRGILRQNGITHVLNCVGFVCP-EYF-KGDLVYKTLWLQDSPSEDITSILYDVFDY 193 (802)
Q Consensus 120 ~~~iSeI~p~LYLGs~~~A----~d~e~Lk~lGIt~VLNL~~e~~p-~~~-~~~i~yl~IPI~D~~~~dL~~~L~eav~f 193 (802)
+.+++-|..++..=..+.. .+.+.|+++||++||+++..... ..+ ..++.|+++|+.|...+.. ..+.+.+++
T Consensus 8 ~~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~-~~i~~~~~~ 86 (166)
T PTZ00242 8 DRQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPK-AVIDNWLRL 86 (166)
T ss_pred CcceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCH-HHHHHHHHH
Confidence 4567778887777665555 34588999999999999754322 122 3589999999988775544 556777888
Q ss_pred HHHHHhc----CCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCcccCCchhHHHHHHHHHHhccC
Q 003695 194 FEDVREQ----GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAM 265 (802)
Q Consensus 194 Ie~a~~~----ggrVLVHC~aGvSRSaTVViAYLM~~~g~SledAi~~VRs~RP~I~PN~gF~~QL~e~EkkL~~~ 265 (802)
+++.++. |++|+|||.+|+|||+++++||||...++++++|+++|+++||.+ +|..|+.+|.+|++.+++.
T Consensus 87 i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~-i~~~Q~~~l~~~~~~~~~~ 161 (166)
T PTZ00242 87 LDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGA-INQTQLQFLKKYKPRKKAA 161 (166)
T ss_pred HHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHhccC
Confidence 8877654 999999999999999999999999999999999999999999986 5899999999999887654
No 10
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.78 E-value=1.3e-18 Score=168.67 Aligned_cols=140 Identities=18% Similarity=0.200 Sum_probs=122.6
Q ss_pred eecCCeEECChhhh-cCHHHHHhCCCcEEEEcccCCCC-----CccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHH
Q 003695 125 RIADHIYLGSDAVA-KNRGILRQNGITHVLNCVGFVCP-----EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVR 198 (802)
Q Consensus 125 eI~p~LYLGs~~~A-~d~e~Lk~lGIt~VLNL~~e~~p-----~~~~~~i~yl~IPI~D~~~~dL~~~L~eav~fIe~a~ 198 (802)
+|.+++.+|..+-. ++.+.++++|+..||.|.+..+- .+..-+++++.||..|....+-...+.++++||++..
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~a 106 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNA 106 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhcc
Confidence 78888888886644 67789999999999998654321 1223488999999999987776688999999999999
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCcccCCchhHHHHHHHHHHhcc
Q 003695 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHA 264 (802)
Q Consensus 199 ~~ggrVLVHC~aGvSRSaTVViAYLM~~~g~SledAi~~VRs~RP~I~PN~gF~~QL~e~EkkL~~ 264 (802)
..|+.|||||++|++||+|+|+||||...+|+.++|+++||.+||.|...+++++.|.+|.+....
T Consensus 107 sLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~~ 172 (183)
T KOG1719|consen 107 SLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIVA 172 (183)
T ss_pred ccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999887643
No 11
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.75 E-value=1.1e-17 Score=174.06 Aligned_cols=123 Identities=17% Similarity=0.193 Sum_probs=107.3
Q ss_pred cCHHHHHhCCCcEEEEcccCCCC--CccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHH
Q 003695 139 KNRGILRQNGITHVLNCVGFVCP--EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRST 216 (802)
Q Consensus 139 ~d~e~Lk~lGIt~VLNL~~e~~p--~~~~~~i~yl~IPI~D~~~~dL~~~L~eav~fIe~a~~~ggrVLVHC~aGvSRSa 216 (802)
...+.|++.||++||.+++...+ .....++.++++|+.|...+.. ..+++.+++|++.++.|++|+|||.+|+|||+
T Consensus 107 ~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~-~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTG 185 (241)
T PTZ00393 107 LYIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTV-DIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAP 185 (241)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHHHHHHHHHhcCCeEEEECCCCCCHHH
Confidence 45688999999999998765432 1234589999999999887765 67888999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHcCcccCCchhHHHHHHHHHHhcc
Q 003695 217 SLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHA 264 (802)
Q Consensus 217 TVViAYLM~~~g~SledAi~~VRs~RP~I~PN~gF~~QL~e~EkkL~~ 264 (802)
++++||||. .||++++|+++||.+||.+ +|..+++.|.+|+++..+
T Consensus 186 tl~AayLI~-~GmspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~k 231 (241)
T PTZ00393 186 VLASIVLIE-FGMDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKKKK 231 (241)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhccc
Confidence 999999998 6999999999999999988 689999999999998643
No 12
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=99.72 E-value=1.5e-17 Score=192.48 Aligned_cols=143 Identities=19% Similarity=0.207 Sum_probs=120.3
Q ss_pred cceeeecCCCCCCCccccccccCCCcccCCCCCCeEEEecCCceEEEecCCCChhhhHHHHHHHHHHHHHhhc-CCcEEE
Q 003695 273 LRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEKA-QGQITS 351 (802)
Q Consensus 273 ~RLYRVrg~S~~dpr~lVPk~ev~~sasSLNSrDcFILdt~s~IYVWiGk~Ss~~er~~ar~aA~~I~~~e~~-~~~I~v 351 (802)
.||||++|+ ++|+..+++..+++||.+||||||+++.||+|+|++++..||.+|++.|++|++.++. .++|.+
T Consensus 139 ~rL~~~KGk------r~vr~~eV~~~~sS~N~gDvFILD~g~~i~qw~G~~Ss~~ER~KAl~~~~~IrD~e~~Gr~~V~v 212 (827)
T KOG0443|consen 139 VRLFHCKGK------RNVRVKEVPFSWSSLNHGDVFILDTGSKIYQWNGPNSSIQERAKALEVVQYIRDNERDGRCEVAV 212 (827)
T ss_pred eEEEEEccc------eeEEEEEEEeehhhcCCCcEEEEEcCCceEEEcCCcccHHHHHHHHHHHHHhhccCCCCceeEEE
Confidence 499999997 4677889999999999999999999999999999999999999999999999998854 467888
Q ss_pred ecCCCC-----hhHhHHHhcCCCC-CCCC----CccccccCCceeEEeecCCccEE--EeccCCCCcCCCCccceeeecc
Q 003695 352 IKEGEE-----PLEFWDALVRGQF-FADG----CNKEEVKNEQVSFSGSNKIATLM--QDGAGEIDEYDLDFELFHKALD 419 (802)
Q Consensus 352 V~EG~E-----p~eFW~aLGGk~~-y~~~----~~~~~~~~~pRLF~cSnaSG~f~--eE~~~~f~QdDLd~E~v~~~~~ 419 (802)
|++|++ -.+||..+||..+ .+.. ..........|||+|++++|.++ ++..++++|+.|+.+++|++|.
T Consensus 213 vdd~~~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~kLYkVsd~~g~l~v~~va~~~l~qdlLd~~dCYILD~ 292 (827)
T KOG0443|consen 213 VDDGKEAADSDLGEFWGFVLGFAPALPKKSPDDDDEQANSAAAKLYKVSDASGGLKVPVVADGPLTKDLLDTEDCYILDC 292 (827)
T ss_pred ecCcccccCchHHHHHHhhcCcCccCCCCCcchhhhhhhccccEEEEEeccCCCccccccccchhhHHhhccCCeEEEec
Confidence 887764 3479999998766 4331 11222257889999999999998 5555579999999999999999
Q ss_pred CC
Q 003695 420 GG 421 (802)
Q Consensus 420 gg 421 (802)
||
T Consensus 293 g~ 294 (827)
T KOG0443|consen 293 GG 294 (827)
T ss_pred CC
Confidence 96
No 13
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.56 E-value=3.5e-14 Score=144.24 Aligned_cols=117 Identities=18% Similarity=0.341 Sum_probs=100.0
Q ss_pred HHHHhCCCcEEEEcccCCCC-C-ccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHH
Q 003695 142 GILRQNGITHVLNCVGFVCP-E-YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLV 219 (802)
Q Consensus 142 e~Lk~lGIt~VLNL~~e~~p-~-~~~~~i~yl~IPI~D~~~~dL~~~L~eav~fIe~a~~~ggrVLVHC~aGvSRSaTVV 219 (802)
..++.++++.|+.+.+...+ . +...++.++++++.|...+++ ..+.+.++.++.+.+ |++|.|||++|.||+++|+
T Consensus 88 ~~~~~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~-~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~li 165 (225)
T KOG1720|consen 88 QYFKNNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPTD-AIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLI 165 (225)
T ss_pred HHhhhcccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCCH-HHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHH
Confidence 56778999999998764422 2 334579999999999998887 567778888888888 9999999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHcCcccCCchhHHHHHHHHH
Q 003695 220 IAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQK 260 (802)
Q Consensus 220 iAYLM~~~g~SledAi~~VRs~RP~I~PN~gF~~QL~e~Ek 260 (802)
+||||+.+||+..||++.||..||.+...+.+...|.++-.
T Consensus 166 Ac~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 166 ACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 99999999999999999999999998888888887776544
No 14
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.53 E-value=4.8e-14 Score=141.76 Aligned_cols=95 Identities=22% Similarity=0.326 Sum_probs=81.9
Q ss_pred CCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhh-cCCCHHHHHHHHHHHcC
Q 003695 165 KGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWR-EGQSFEDAFQYVKAARG 243 (802)
Q Consensus 165 ~~~i~yl~IPI~D~~~~dL~~~L~eav~fIe~a~~~ggrVLVHC~aGvSRSaTVViAYLM~~-~g~SledAi~~VRs~RP 243 (802)
..++.+.++|+.|...+++ ..+++++++|+.++++|++|+|||.+|+|||+|+++||||++ +.+..++|+.+++.+|+
T Consensus 70 ~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~ 148 (180)
T COG2453 70 NDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRP 148 (180)
T ss_pred cCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 4678999999999999988 889999999999999999999999999999999999999999 56677777777888887
Q ss_pred cccCCchhHHHHHHHHHHh
Q 003695 244 VTNPNMGFACQLLLCQKRV 262 (802)
Q Consensus 244 ~I~PN~gF~~QL~e~EkkL 262 (802)
. ++....+++..++...
T Consensus 149 ~--~v~~~~q~~~~~e~~~ 165 (180)
T COG2453 149 G--AVVTEIQHLFELEQEL 165 (180)
T ss_pred c--ccccHHHHHHHHHHHH
Confidence 7 6666666666666554
No 15
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.45 E-value=2.3e-13 Score=121.13 Aligned_cols=75 Identities=27% Similarity=0.377 Sum_probs=67.7
Q ss_pred ccCCCcccCCCCCCeEEEecCCceEEEecCCCChhhhHHHHHHHHHHHHHhh-cCCcEEEecCCCChhHhHHHhcC
Q 003695 293 LLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEK-AQGQITSIKEGEEPLEFWDALVR 367 (802)
Q Consensus 293 ~ev~~sasSLNSrDcFILdt~s~IYVWiGk~Ss~~er~~ar~aA~~I~~~e~-~~~~I~vV~EG~Ep~eFW~aLGG 367 (802)
.+++....+|+++||||||++..||+|+|++|+..++..|...|..+.+..+ ...+|.+|+||.||..||..|||
T Consensus 14 ~~~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~~~~~~i~~v~eg~E~~~F~~~f~~ 89 (90)
T smart00262 14 PEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDTLGPGPVQVRVVDEGKEPPEFWSLFGG 89 (90)
T ss_pred EEcCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHhCC
Confidence 3567788999999999999999999999999999999999999988887654 45689999999999999999987
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.39 E-value=4.9e-13 Score=152.08 Aligned_cols=149 Identities=22% Similarity=0.270 Sum_probs=120.8
Q ss_pred CccccceeeecCCCCCCCccccccccCCCcccCCCCCCeEEEecCCceEEEecCCCChhhhHHHHHHHHHHHHHh-hcCC
Q 003695 269 PNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYE-KAQG 347 (802)
Q Consensus 269 p~sv~RLYRVrg~S~~dpr~lVPk~ev~~sasSLNSrDcFILdt~s~IYVWiGk~Ss~~er~~ar~aA~~I~~~e-~~~~ 347 (802)
+.-++||||+.+..... .+ .-+.+...|||.|.||+||.|..||||.|.++......+|+..|.+|.+.+ ++..
T Consensus 618 ~~h~TRlYrv~~~g~~i--~l---EPVpl~~tSLDPRf~FlLD~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK~ 692 (1255)
T KOG0444|consen 618 PAHLTRLYRVGVNGTAI--EL---EPVPLSVTSLDPRFCFLLDAGETIYIWSGYKSRITVSNKARLFAEKINKRERKGKS 692 (1255)
T ss_pred hHHhhhhheecccccee--Ee---eccCccccccCcceEEEEeCCceEEEEeccchhcccchHHHHHHHHhhhhhccCce
Confidence 44578999998753211 11 123567799999999999999999999999999999999999999999887 6778
Q ss_pred cEEEecCCCChhHhHHHhcCCCCCCC----CCccccc-cCCceeEEeecCCccEE--E--ecc-CCCCcCCCCccceeee
Q 003695 348 QITSIKEGEEPLEFWDALVRGQFFAD----GCNKEEV-KNEQVSFSGSNKIATLM--Q--DGA-GEIDEYDLDFELFHKA 417 (802)
Q Consensus 348 ~I~vV~EG~Ep~eFW~aLGGk~~y~~----~~~~~~~-~~~pRLF~cSnaSG~f~--e--E~~-~~f~QdDLd~E~v~~~ 417 (802)
+|+.+.+|+|+.+||++|||.++.+. .+..++. +..||||+|.-.-|++. + +.+ +.++|+-|+...||++
T Consensus 693 EI~l~rQg~e~pEFWqaLgg~p~e~~~~ikeHVPEdf~p~qpkLYkV~lGmGyLELPQvel~P~~~l~q~lL~sk~VyiL 772 (1255)
T KOG0444|consen 693 EIELCRQGREPPEFWQALGGNPDEPQGAIKEHVPEDFVPEQPKLYKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYIL 772 (1255)
T ss_pred eeehhhhcCCCHHHHHHhCCCCcccccchhhcCCcccCCCCcceEEEccccceeecchhhhchhhHHHHHhhcCCeEEEE
Confidence 99999999999999999999887654 2333333 67899999999889988 2 222 3689999999999999
Q ss_pred ccCCC
Q 003695 418 LDGGV 422 (802)
Q Consensus 418 ~~gg~ 422 (802)
|..-.
T Consensus 773 Dc~sD 777 (1255)
T KOG0444|consen 773 DCNSD 777 (1255)
T ss_pred ecCCc
Confidence 87654
No 17
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.26 E-value=1.3e-11 Score=122.73 Aligned_cols=107 Identities=19% Similarity=0.243 Sum_probs=69.0
Q ss_pred CCeEECChhh----------hcCHHHHHhCCCcEEEEcccCCC------CC----ccCCCcEEEEEEccCCCCCchHHHH
Q 003695 128 DHIYLGSDAV----------AKNRGILRQNGITHVLNCVGFVC------PE----YFKGDLVYKTLWLQDSPSEDITSIL 187 (802)
Q Consensus 128 p~LYLGs~~~----------A~d~e~Lk~lGIt~VLNL~~e~~------p~----~~~~~i~yl~IPI~D~~~~dL~~~L 187 (802)
.+|.|...+- ..|.+.|+..|++.||.++...+ +. +-..++.++|+||.|...+++. .+
T Consensus 41 ~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~-~~ 119 (168)
T PF05706_consen 41 GFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFA-AA 119 (168)
T ss_dssp SEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HH-HH
T ss_pred ceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHH-HH
Confidence 3555655544 35678999999999999975211 11 2235899999999999998874 44
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhc-CCCHHHHH
Q 003695 188 YDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWRE-GQSFEDAF 235 (802)
Q Consensus 188 ~eav~fIe~a~~~ggrVLVHC~aGvSRSaTVViAYLM~~~-g~SledAi 235 (802)
.++++.|...+++|++|+|||.+|+|||++|++++|+... .++.++||
T Consensus 120 ~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 120 WQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 5678888899999999999999999999999999988764 68999986
No 18
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.22 E-value=3.1e-11 Score=120.27 Aligned_cols=117 Identities=14% Similarity=0.161 Sum_probs=76.1
Q ss_pred ccceeecCCeEECChhhhcCHHHHHhCCCcEEEEcccCCCCCc-----cCCCcEEEEEEccCCCCC---chHHHHHHHHH
Q 003695 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEY-----FKGDLVYKTLWLQDSPSE---DITSILYDVFD 192 (802)
Q Consensus 121 ~~iSeI~p~LYLGs~~~A~d~e~Lk~lGIt~VLNL~~e~~p~~-----~~~~i~yl~IPI~D~~~~---dL~~~L~eav~ 192 (802)
.....|.++||-|+++.+.+...|+++||+.||+|..+..+.. ...+++++++++...... -....+.++++
T Consensus 5 ~nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~ 84 (164)
T PF03162_consen 5 LNFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALE 84 (164)
T ss_dssp TT-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHH
T ss_pred ccccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHH
Confidence 3467899999999999999999999999999999987643321 146899999999755431 12234555555
Q ss_pred HHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 003695 193 YFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKA 240 (802)
Q Consensus 193 fIe~a~~~ggrVLVHC~aGvSRSaTVViAYLM~~~g~SledAi~~VRs 240 (802)
.|.+. .+.+|||||..|..|+++|+++|- +.+||++..|++..+.
T Consensus 85 ~ild~--~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 85 IILDP--RNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRR 129 (164)
T ss_dssp HHH-G--GG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHH
T ss_pred HHhCC--CCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHH
Confidence 55333 458999999999999999999988 7789999999998876
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.20 E-value=1.8e-12 Score=147.51 Aligned_cols=144 Identities=18% Similarity=0.289 Sum_probs=113.2
Q ss_pred CCccccceeeecCCCC-CCCccccccccCCCcccCCCCCCeEEEecCC-------ceEEEecCCCChhhhHHHHHHHHHH
Q 003695 268 SPNSMLRIYRIAPHSS-YDPLHLVPKLLNYPVAQGFDTRGAFIVLVPS-------AIYVWIGKNCSVMMSNRAREAANQV 339 (802)
Q Consensus 268 Sp~sv~RLYRVrg~S~-~dpr~lVPk~ev~~sasSLNSrDcFILdt~s-------~IYVWiGk~Ss~~er~~ar~aA~~I 339 (802)
...+.+.|||++.... ...+.+ ++.+.+..|||..||||+.|. .+|+|.|+.|+. .+...|..+
T Consensus 1036 ~G~~~pelfq~R~NGsalctR~I----Qin~da~~LnS~FC~iL~vPFe~~~~~gvvy~w~gk~sdp----~e~~~a~d~ 1107 (1255)
T KOG0444|consen 1036 LGGKWPELFQMRANGSALCTRTI----QINCDANQLNSAFCHMLRIPFEEDGHRGVVYVWMGKDSDP----REHEFASDL 1107 (1255)
T ss_pred hcCCCchheeeecCCccceeeeE----EecCcHHHHhhhhHheEecccccCCCceEEEEEeccCCCh----HHHHHHHHh
Confidence 3456788999987643 333433 889999999999999999773 589999999997 666666555
Q ss_pred HHHh-hcCCcEEEecCCCChhHhHHHhcCCCCCCCCCccccccCCceeEEeecCCccEE-EeccCCCCcCCCCccceeee
Q 003695 340 IRYE-KAQGQITSIKEGEEPLEFWDALVRGQFFADGCNKEEVKNEQVSFSGSNKIATLM-QDGAGEIDEYDLDFELFHKA 417 (802)
Q Consensus 340 ~~~e-~~~~~I~vV~EG~Ep~eFW~aLGGk~~y~~~~~~~~~~~~pRLF~cSnaSG~f~-eE~~~~f~QdDLd~E~v~~~ 417 (802)
.-.- ...-.+++++||+|+++||..+|++.+|..... .....|||+|++..|+|. .|.+..||||||+.++++..
T Consensus 1108 ~~~~~d~~~~~~~~~egee~e~fw~~~g~~k~ye~d~~---~~khtrlfrc~nekgyfa~sek~~DfcqDDl~dddim~l 1184 (1255)
T KOG0444|consen 1108 VVRDDDNDFRIVEVQEGEENEEFWKVLGGKKKYETDSS---FVKHTRLFRCTNEKGYFAISEKTVDFCQDDLDDDDIMIL 1184 (1255)
T ss_pred cCccccchhhhhccCCccchHHHhcccCCCCccchhHH---HHHHHHHHhccchhhhhhHhHhhhhhhhccchhhhhhhh
Confidence 4321 222357889999999999999999999876432 234678999999999999 88888999999999999988
Q ss_pred ccCCC
Q 003695 418 LDGGV 422 (802)
Q Consensus 418 ~~gg~ 422 (802)
+.|..
T Consensus 1185 dng~~ 1189 (1255)
T KOG0444|consen 1185 DNGDA 1189 (1255)
T ss_pred cccce
Confidence 77653
No 20
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.17 E-value=3.7e-10 Score=108.81 Aligned_cols=117 Identities=19% Similarity=0.219 Sum_probs=86.4
Q ss_pred ceeecCCeEECChhhhcCHHHHHhCCCcEEEEcccCCC----CCc-------cCCCcEEEEEEccCCCCCchHHHHHHHH
Q 003695 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC----PEY-------FKGDLVYKTLWLQDSPSEDITSILYDVF 191 (802)
Q Consensus 123 iSeI~p~LYLGs~~~A~d~e~Lk~lGIt~VLNL~~e~~----p~~-------~~~~i~yl~IPI~D~~~~dL~~~L~eav 191 (802)
+.+|.+.+|+++.....+.+.|+++||+.|||+....+ |.. ...++.|+++|+..... +. . .+.
T Consensus 2 ~~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~-~~-~---~v~ 76 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDI-TP-D---DVE 76 (135)
T ss_pred ceEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCC-CH-H---HHH
Confidence 45899999999999999999999999999999965321 211 12589999999875332 11 1 122
Q ss_pred HHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccc
Q 003695 192 DYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTN 246 (802)
Q Consensus 192 ~fIe~a~~~ggrVLVHC~aGvSRSaTVViAYLM~~~g~SledAi~~VRs~RP~I~ 246 (802)
.|........++||+||++|. |++++.+.++.. .|++.+++++..+..-..+.
T Consensus 77 ~f~~~~~~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 77 TFRAAIGAAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDLS 129 (135)
T ss_pred HHHHHHHhCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCcc
Confidence 232222245689999999999 998887666665 79999999999988755443
No 21
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=99.13 E-value=9.1e-11 Score=134.04 Aligned_cols=148 Identities=26% Similarity=0.316 Sum_probs=115.0
Q ss_pred ccceeeecCCCCCCCccccccccCCCcccCCCCCCeEEEecCC--ceEEEecCCCChhhhHHHHHHHHHHHHHh---hcC
Q 003695 272 MLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPS--AIYVWIGKNCSVMMSNRAREAANQVIRYE---KAQ 346 (802)
Q Consensus 272 v~RLYRVrg~S~~dpr~lVPk~ev~~sasSLNSrDcFILdt~s--~IYVWiGk~Ss~~er~~ar~aA~~I~~~e---~~~ 346 (802)
..|||.|+|......... ++.+..++|.|+-.||+...+ .+|+|+|.++....+..+..+|+++++++ ...
T Consensus 644 ~erlY~v~G~vs~Et~l~----Ev~c~~S~LRSr~smv~~~~~~~~~~~whg~k~~~ht~~v~v~aa~~~~~q~pgs~~~ 719 (919)
T KOG0445|consen 644 EERLYCVRGEVSVETNLL----EVACHCSSLRSRTSMVVLNVNKALIYLWHGCKAQAHTKEVGVTAANKIKEQCPGSSSK 719 (919)
T ss_pred hhheeeEecccccchhhh----HhhhccccccccceEEEEeccccceEEEecccCCcchhhHhHHHHHHHHHhCCCcccc
Confidence 457999999855544433 788899999999999998764 69999999999999999999999999987 344
Q ss_pred CcEEEecCCCChhHhHHHhcCCCCCCCCCccccccCCceeEEeecCCc-cEE--EeccCCCCcCCCCccceeeeccCCCC
Q 003695 347 GQITSIKEGEEPLEFWDALVRGQFFADGCNKEEVKNEQVSFSGSNKIA-TLM--QDGAGEIDEYDLDFELFHKALDGGVV 423 (802)
Q Consensus 347 ~~I~vV~EG~Ep~eFW~aLGGk~~y~~~~~~~~~~~~pRLF~cSnaSG-~f~--eE~~~~f~QdDLd~E~v~~~~~gg~v 423 (802)
..+++|+||.|+..||++||.+. ..+.+|||..+...- .|. .-...+|.|.|| |.+
T Consensus 720 ~~~~Eveegs~~~~~~~alGrkd----------f~~~~RlF~~sS~qa~els~p~rc~~pFsQ~~L-----y~a------ 778 (919)
T KOG0445|consen 720 VTIHEVEEGSEPLGFWDALGRKD----------FNFAPRLFILSSSQATELSYPARCPMPFSQEDL-----YSA------ 778 (919)
T ss_pred ceeEeecCCCCchhhhhhccccc----------ccccceeeeccchhhhhccCcccCCCcccHHHH-----hhh------
Confidence 67999999999999999999654 457899999987641 111 112224555444 333
Q ss_pred CCeeccCCCcceeecCccccchhhhhhhc
Q 003695 424 PPFSVSNAGSETCVPARESGWCRLRRKFV 452 (802)
Q Consensus 424 p~~~~~~~~~e~~lp~~~~~w~~~~~~~~ 452 (802)
||.|+|+|.||=- |..-| |||
T Consensus 779 ---fLvD~gdelwLW~----w~s~r-~~A 799 (919)
T KOG0445|consen 779 ---FLVDNGDELWLWQ----WASDR-KSA 799 (919)
T ss_pred ---eeeccCCeeEeeh----hhhHH-HHH
Confidence 8999999999965 88888 554
No 22
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.11 E-value=7.7e-11 Score=101.08 Aligned_cols=69 Identities=22% Similarity=0.383 Sum_probs=61.5
Q ss_pred cCCCcccCCCCCCeEEEecCCceEEEecCCCChhhhHHHHHHHHHHH-HHhhcCCcEEEecCCCChhHhH
Q 003695 294 LNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVI-RYEKAQGQITSIKEGEEPLEFW 362 (802)
Q Consensus 294 ev~~sasSLNSrDcFILdt~s~IYVWiGk~Ss~~er~~ar~aA~~I~-~~e~~~~~I~vV~EG~Ep~eFW 362 (802)
.+..+..+|+++||||||++..||+|+|++++..++..+...|.++. ........+..+.||+|+..||
T Consensus 7 ~~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~~~~~~~~~~~~~~~eg~E~~~F~ 76 (76)
T PF00626_consen 7 QVPLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELLSEERPPLPEVIRVEEGKEPAEFL 76 (76)
T ss_dssp EESSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHHHHHTTTTSEEEEEETTHHHHHHH
T ss_pred cCCCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhhhhcCCCCCEEEEecCCCCChHHC
Confidence 55778899999999999999999999999999999999999999888 4445566788889999999998
No 23
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.99 E-value=4.5e-09 Score=100.88 Aligned_cols=116 Identities=24% Similarity=0.282 Sum_probs=83.7
Q ss_pred CHHHHHhCCCcEEEEcccCCCC--CccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHH--HhcCCeEEEEcCCCCchH
Q 003695 140 NRGILRQNGITHVLNCVGFVCP--EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDV--REQGGRVFVHCCQGVSRS 215 (802)
Q Consensus 140 d~e~Lk~lGIt~VLNL~~e~~p--~~~~~~i~yl~IPI~D~~~~dL~~~L~eav~fIe~a--~~~ggrVLVHC~aGvSRS 215 (802)
-.+.|+++|++.||-+|+.... .....+|..+..+..|...+.- +..++=...+... .+-|..|.|||.+|+||.
T Consensus 33 fieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp~-qvv~~w~~l~~~~f~e~p~~cvavhcvaglgra 111 (173)
T KOG2836|consen 33 FIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPPN-QVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRA 111 (173)
T ss_pred HHHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCch-HHHHHHHHHHHHHHhhCCCCeEEEEeecccCcc
Confidence 3688999999999999874432 2235678888888877654432 3233322322222 235789999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHcCcccCCchhHHHHHHHHHH
Q 003695 216 TSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKR 261 (802)
Q Consensus 216 aTVViAYLM~~~g~SledAi~~VRs~RP~I~PN~gF~~QL~e~Ekk 261 (802)
+.+|+..|+.. ||.+++|+++||++|..+ .|. +||.-+|+.
T Consensus 112 pvlvalalie~-gmkyedave~ir~krrga-~n~---kql~~leky 152 (173)
T KOG2836|consen 112 PVLVALALIEA-GMKYEDAVEMIRQKRRGA-INS---KQLLYLEKY 152 (173)
T ss_pred hHHHHHHHHHc-cccHHHHHHHHHHHhhcc-ccH---HHHHHHHHh
Confidence 99998888865 999999999999999986 665 455555554
No 24
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.90 E-value=8.8e-09 Score=91.67 Aligned_cols=88 Identities=15% Similarity=0.198 Sum_probs=65.1
Q ss_pred EEEEEEccCCCCCchHHHHHHHHHHHHHHHh---cCCeEEEEcCCCCchHHHHHHHHHHhhc------CCCHHHHHHHHH
Q 003695 169 VYKTLWLQDSPSEDITSILYDVFDYFEDVRE---QGGRVFVHCCQGVSRSTSLVIAYLMWRE------GQSFEDAFQYVK 239 (802)
Q Consensus 169 ~yl~IPI~D~~~~dL~~~L~eav~fIe~a~~---~ggrVLVHC~aGvSRSaTVViAYLM~~~------g~SledAi~~VR 239 (802)
.|+...+.|...++....|.+.++.+++... .+++|+|||.+|+|||++++++|+|... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3445556666555444555556666655544 3789999999999999999999998763 368889999999
Q ss_pred HHcCcccCCchhHHHHH
Q 003695 240 AARGVTNPNMGFACQLL 256 (802)
Q Consensus 240 s~RP~I~PN~gF~~QL~ 256 (802)
..|+....+..+...+.
T Consensus 84 ~~r~~~~~~~~q~~~~~ 100 (105)
T smart00404 84 KQRPGMVQTFEQYLFLY 100 (105)
T ss_pred hhhhhhCCcHHHHHHHH
Confidence 99999877766655554
No 25
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.90 E-value=8.8e-09 Score=91.67 Aligned_cols=88 Identities=15% Similarity=0.198 Sum_probs=65.1
Q ss_pred EEEEEEccCCCCCchHHHHHHHHHHHHHHHh---cCCeEEEEcCCCCchHHHHHHHHHHhhc------CCCHHHHHHHHH
Q 003695 169 VYKTLWLQDSPSEDITSILYDVFDYFEDVRE---QGGRVFVHCCQGVSRSTSLVIAYLMWRE------GQSFEDAFQYVK 239 (802)
Q Consensus 169 ~yl~IPI~D~~~~dL~~~L~eav~fIe~a~~---~ggrVLVHC~aGvSRSaTVViAYLM~~~------g~SledAi~~VR 239 (802)
.|+...+.|...++....|.+.++.+++... .+++|+|||.+|+|||++++++|+|... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3445556666555444555556666655544 3789999999999999999999998763 368889999999
Q ss_pred HHcCcccCCchhHHHHH
Q 003695 240 AARGVTNPNMGFACQLL 256 (802)
Q Consensus 240 s~RP~I~PN~gF~~QL~ 256 (802)
..|+....+..+...+.
T Consensus 84 ~~r~~~~~~~~q~~~~~ 100 (105)
T smart00012 84 KQRPGMVQTFEQYLFLY 100 (105)
T ss_pred hhhhhhCCcHHHHHHHH
Confidence 99999877766655554
No 26
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.73 E-value=4.8e-08 Score=91.69 Aligned_cols=92 Identities=21% Similarity=0.257 Sum_probs=56.2
Q ss_pred ceeecCCeEECChhhhcCHHHHHhCCCcEEEEcccCCC-C---Cc-------cCCCcEEEEEEccCCCCCchHHHHHHHH
Q 003695 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC-P---EY-------FKGDLVYKTLWLQDSPSEDITSILYDVF 191 (802)
Q Consensus 123 iSeI~p~LYLGs~~~A~d~e~Lk~lGIt~VLNL~~e~~-p---~~-------~~~~i~yl~IPI~D~~~~dL~~~L~eav 191 (802)
+.+|.+.+++++++...+...|++.||++|||+....+ + .. ...++.|+++|+.-.. +. ...+.
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~---~~--~~~v~ 76 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGA---IT--EEDVE 76 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT-------HHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCC---CC--HHHHH
Confidence 67899999999999999999999999999999964321 1 11 1358999999997532 21 13344
Q ss_pred HHHHHHHhcCCeEEEEcCCCCchHHHHHH
Q 003695 192 DYFEDVREQGGRVFVHCCQGVSRSTSLVI 220 (802)
Q Consensus 192 ~fIe~a~~~ggrVLVHC~aGvSRSaTVVi 220 (802)
+|.+......++||+||+.|. |+.++.+
T Consensus 77 ~f~~~l~~~~~Pvl~hC~sG~-Ra~~l~~ 104 (110)
T PF04273_consen 77 AFADALESLPKPVLAHCRSGT-RASALWA 104 (110)
T ss_dssp HHHHHHHTTTTSEEEE-SCSH-HHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCCCh-hHHHHHH
Confidence 444444446789999999999 9977644
No 27
>PLN02727 NAD kinase
Probab=98.62 E-value=1.3e-07 Score=113.55 Aligned_cols=99 Identities=11% Similarity=0.213 Sum_probs=77.4
Q ss_pred CeEECChhhhcCHHHHHhCCCcEEEEcccCCCC--Ccc--------CCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHH
Q 003695 129 HIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP--EYF--------KGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVR 198 (802)
Q Consensus 129 ~LYLGs~~~A~d~e~Lk~lGIt~VLNL~~e~~p--~~~--------~~~i~yl~IPI~D~~~~dL~~~L~eav~fIe~a~ 198 (802)
.+|+++++.+.+.+.|.++||+.|||+.++... .+. ..++.|+++|+.+...... +.+.++.+++++
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~-EqVe~fa~~l~~-- 338 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSA-EQVEKFASLVSD-- 338 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHHHHHHh--
Confidence 689999999999999999999999999764431 121 2579999999977655443 444555555533
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 003695 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (802)
Q Consensus 199 ~~ggrVLVHC~aGvSRSaTVViAYLM~~~g~S 230 (802)
...++||+||+.|..|+++|+++||.+.-+..
T Consensus 339 slpkPVLvHCKSGarRAGamvA~yl~~~~~~~ 370 (986)
T PLN02727 339 SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSA 370 (986)
T ss_pred hcCCCEEEECCCCCchHHHHHHHHHHHHcccc
Confidence 45789999999999999999999999886655
No 28
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.52 E-value=3.7e-07 Score=94.27 Aligned_cols=82 Identities=15% Similarity=0.222 Sum_probs=59.0
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHh--cCCeEEEEcCCCCchHHHHHHHHHHhhc-----CCCHHHHHHHHHHHcCcccCC
Q 003695 176 QDSPSEDITSILYDVFDYFEDVRE--QGGRVFVHCCQGVSRSTSLVIAYLMWRE-----GQSFEDAFQYVKAARGVTNPN 248 (802)
Q Consensus 176 ~D~~~~dL~~~L~eav~fIe~a~~--~ggrVLVHC~aGvSRSaTVViAYLM~~~-----g~SledAi~~VRs~RP~I~PN 248 (802)
.|...++-...|.+.++.+++... .+++|+|||.+|+|||+++++++++... ..++.+|+..||+.|+.+..+
T Consensus 139 ~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~~ 218 (231)
T cd00047 139 PDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQT 218 (231)
T ss_pred CCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCC
Confidence 344333332334444444444432 3789999999999999999999987543 689999999999999988888
Q ss_pred chhHHHHHH
Q 003695 249 MGFACQLLL 257 (802)
Q Consensus 249 ~gF~~QL~e 257 (802)
..+...+..
T Consensus 219 ~~Qy~f~~~ 227 (231)
T cd00047 219 EEQYIFLYR 227 (231)
T ss_pred HHHHHHHHH
Confidence 766665543
No 29
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.41 E-value=8.3e-07 Score=93.38 Aligned_cols=71 Identities=14% Similarity=0.245 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhc-CCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHHcCcccCCchhHHHHHH
Q 003695 187 LYDVFDYFEDVREQ-GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFACQLLL 257 (802)
Q Consensus 187 L~eav~fIe~a~~~-ggrVLVHC~aGvSRSaTVViAYLM~~-----~g~SledAi~~VRs~RP~I~PN~gF~~QL~e 257 (802)
+.+.+..++..... +++|+|||.+|+||||++++++++.. ...++.+++..||..|+.+..+..++..+.+
T Consensus 178 ~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~~Qy~f~~~ 254 (258)
T smart00194 178 ILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTEEQYIFLYR 254 (258)
T ss_pred HHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCCHHHHHHHHH
Confidence 33334444433332 78999999999999999999998743 4689999999999999998888877666643
No 30
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.38 E-value=1.6e-06 Score=85.19 Aligned_cols=113 Identities=18% Similarity=0.191 Sum_probs=81.0
Q ss_pred HHHHHhCCCcEEEEcccCCCCCccCCCc---EEEEEEccCCCCC------chHHHHHHHHHHHHHHHhcCCeEEEEcCCC
Q 003695 141 RGILRQNGITHVLNCVGFVCPEYFKGDL---VYKTLWLQDSPSE------DITSILYDVFDYFEDVREQGGRVFVHCCQG 211 (802)
Q Consensus 141 ~e~Lk~lGIt~VLNL~~e~~p~~~~~~i---~yl~IPI~D~~~~------dL~~~L~eav~fIe~a~~~ggrVLVHC~aG 211 (802)
.+...+.|-+++|.+.........+..+ .++.+-+.|...+ .-..+...+++|+++.-+. ..+||||.+|
T Consensus 25 ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC~aG 103 (172)
T COG5350 25 AETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHCYAG 103 (172)
T ss_pred HHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceeeeeccc
Confidence 4556678899999997632222222222 3455555543322 2235788999999988655 8999999999
Q ss_pred CchHHHHHH-HHHHhhcCCCHHHHHHHHHHHcCcccCCchhHHH
Q 003695 212 VSRSTSLVI-AYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQ 254 (802)
Q Consensus 212 vSRSaTVVi-AYLM~~~g~SledAi~~VRs~RP~I~PN~gF~~Q 254 (802)
+|||.++++ |-|.....|.-.++.+.++..+|.+.||+..+..
T Consensus 104 ISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~RliaI 147 (172)
T COG5350 104 ISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIAI 147 (172)
T ss_pred cccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHHH
Confidence 999976543 4567778999999999999999999999876543
No 31
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.26 E-value=3.6e-06 Score=95.63 Aligned_cols=148 Identities=19% Similarity=0.203 Sum_probs=102.7
Q ss_pred ccccceeecCCeEECChhhhcCHHHHHhC--------------CCcEEEEcccCCCCCccCC--CcEEEEEEccCCCCCc
Q 003695 119 FDKECSRIADHIYLGSDAVAKNRGILRQN--------------GITHVLNCVGFVCPEYFKG--DLVYKTLWLQDSPSED 182 (802)
Q Consensus 119 ~~~~iSeI~p~LYLGs~~~A~d~e~Lk~l--------------GIt~VLNL~~e~~p~~~~~--~i~yl~IPI~D~~~~d 182 (802)
++-+++-|+++|..-++++..... +.++ |==.|.||+++. .|... .-....+++.|...+.
T Consensus 11 ~DLDltYIT~rIIamsfPa~~~es-~yRN~l~dV~~fL~s~H~~~y~vyNL~~er--~yd~~~f~g~V~~~~~~Dh~~P~ 87 (434)
T KOG2283|consen 11 FDLDLTYITSRIIAMSFPAEGIES-LYRNNLEDVVLFLDSKHKDHYKVYNLSSER--LYDPSRFHGRVARFGFDDHNPPP 87 (434)
T ss_pred ccccceeeeeeEEEEeCCCCcchh-hhcCCHHHHHHHHhhccCCceEEEecCccc--cCCccccccceeecCCCCCCCCc
Confidence 445567777777777766653322 2222 233477777532 22222 2245568889998888
Q ss_pred hHHHHHHHHHHHHHHHhc--CCeEEEEcCCCCchHHHHHHHHHHhhcCCC-HHHHHHHHHHHc---C--cccCCchhHHH
Q 003695 183 ITSILYDVFDYFEDVREQ--GGRVFVHCCQGVSRSTSLVIAYLMWREGQS-FEDAFQYVKAAR---G--VTNPNMGFACQ 254 (802)
Q Consensus 183 L~~~L~eav~fIe~a~~~--ggrVLVHC~aGvSRSaTVViAYLM~~~g~S-ledAi~~VRs~R---P--~I~PN~gF~~Q 254 (802)
+ ..+..+++-++..+.+ ..-|.|||++|++|+++|++||||+..-.. +++|+++.-.+| . ...--+.+.+.
T Consensus 88 L-~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RY 166 (434)
T KOG2283|consen 88 L-ELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRY 166 (434)
T ss_pred H-HHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHH
Confidence 7 6777888888887764 478899999999999999999999987665 999999999999 3 22344677888
Q ss_pred HHHHHHHhccCCCCCc
Q 003695 255 LLLCQKRVHAMPASPN 270 (802)
Q Consensus 255 L~e~EkkL~~~~aSp~ 270 (802)
+..|+..+......++
T Consensus 167 v~Y~~~~l~~~~~~~~ 182 (434)
T KOG2283|consen 167 VGYFSRVLLNGPLPPR 182 (434)
T ss_pred HHHHHHHhhcCCcCcc
Confidence 8888875544444333
No 32
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.23 E-value=4.4e-06 Score=82.63 Aligned_cols=110 Identities=18% Similarity=0.263 Sum_probs=55.8
Q ss_pred ecC-CeEECChhh---hcCHHHHHhCCCcEEEEcccCC----CCCccCCCcEEEEEEccCCCCCc---hH----------
Q 003695 126 IAD-HIYLGSDAV---AKNRGILRQNGITHVLNCVGFV----CPEYFKGDLVYKTLWLQDSPSED---IT---------- 184 (802)
Q Consensus 126 I~p-~LYLGs~~~---A~d~e~Lk~lGIt~VLNL~~e~----~p~~~~~~i~yl~IPI~D~~~~d---L~---------- 184 (802)
|-+ .||-++... ..+.+.|.++||+.||++.... .|.....++.++++|+.+..... +.
T Consensus 16 ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 95 (164)
T PF13350_consen 16 IRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAP 95 (164)
T ss_dssp S-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHH
T ss_pred ecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchh
Confidence 444 488887554 3567899999999999996432 13445568999999997654431 11
Q ss_pred HHH------------HHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHH
Q 003695 185 SIL------------YDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQ 236 (802)
Q Consensus 185 ~~L------------~eav~fIe~a~~~ggrVLVHC~aGvSRSaTVViAYLM~~~g~SledAi~ 236 (802)
..+ ....++++-.....++|||||.+|+.|++.+++..| ...|.+.++.++
T Consensus 96 ~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll-~~lGV~~~~I~~ 158 (164)
T PF13350_consen 96 RGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLL-SLLGVPDEDIIA 158 (164)
T ss_dssp HHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHH-HHTT--HHHHHH
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHH-HHcCCCHHHHHH
Confidence 011 111112222334558999999999999987755554 556988877654
No 33
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=98.13 E-value=1.4e-05 Score=83.64 Aligned_cols=117 Identities=12% Similarity=0.190 Sum_probs=87.6
Q ss_pred ccceeecCCeEECChhhhcCHHHHHhCCCcEEEEcccCCCCC----cc-CCCcEEEEEEccCCC------CCch-HHHHH
Q 003695 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE----YF-KGDLVYKTLWLQDSP------SEDI-TSILY 188 (802)
Q Consensus 121 ~~iSeI~p~LYLGs~~~A~d~e~Lk~lGIt~VLNL~~e~~p~----~~-~~~i~yl~IPI~D~~------~~dL-~~~L~ 188 (802)
.+.+-|.++||-++++...+..+|+.++++.||.++.+..|+ ++ ..+|++.+|-|.-.. ..++ ...+.
T Consensus 58 lnFs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~ 137 (249)
T KOG1572|consen 58 LNFSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIR 137 (249)
T ss_pred ccccccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHH
Confidence 345568889999999999999999999999999998775443 12 357899999986333 2333 33355
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 003695 189 DVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKA 240 (802)
Q Consensus 189 eav~fIe~a~~~ggrVLVHC~aGvSRSaTVViAYLM~~~g~SledAi~~VRs 240 (802)
.+++++ ..+.+.++||||..|..|++++|.+.- +.++|++.-.++.-+.
T Consensus 138 ~~l~~l--ld~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~ 186 (249)
T KOG1572|consen 138 KALKVL--LDKRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLR 186 (249)
T ss_pred HHHHHH--hcccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHH
Confidence 566653 334678999999999999999876654 7789998877765443
No 34
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.12 E-value=1e-05 Score=92.57 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=65.0
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHhcC---------CeEEEEcCCCCchHHHHHHHHHHhhc-CCCHHHHHHHHHHHcCc
Q 003695 175 LQDSPSEDITSILYDVFDYFEDVREQG---------GRVFVHCCQGVSRSTSLVIAYLMWRE-GQSFEDAFQYVKAARGV 244 (802)
Q Consensus 175 I~D~~~~dL~~~L~eav~fIe~a~~~g---------grVLVHC~aGvSRSaTVViAYLM~~~-g~SledAi~~VRs~RP~ 244 (802)
..|+..++-...|.+.++.+....+.+ ...+|||.+|+||||+++++|+|+.. ..++++.+..+|..|+.
T Consensus 431 WPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRng 510 (535)
T PRK15375 431 WPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRNN 510 (535)
T ss_pred CCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCCc
Confidence 456554443334555555555442221 23479999999999999999999754 46999999999999997
Q ss_pred -ccCCchhHHHHHHHHHHh
Q 003695 245 -TNPNMGFACQLLLCQKRV 262 (802)
Q Consensus 245 -I~PN~gF~~QL~e~EkkL 262 (802)
.--+..++..|.+.+..|
T Consensus 511 ~MVQt~eQy~~l~~~~~~~ 529 (535)
T PRK15375 511 RMLEDASQFVQLKAMQAQL 529 (535)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 777888899998888766
No 35
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.09 E-value=3.9e-05 Score=72.98 Aligned_cols=113 Identities=19% Similarity=0.203 Sum_probs=78.4
Q ss_pred cceeecCCeEECChhhhcCHHHHHhCCCcEEEEcccCCC-CC--cc--------CCCcEEEEEEccCCCCCchHHHHHHH
Q 003695 122 ECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC-PE--YF--------KGDLVYKTLWLQDSPSEDITSILYDV 190 (802)
Q Consensus 122 ~iSeI~p~LYLGs~~~A~d~e~Lk~lGIt~VLNL~~e~~-p~--~~--------~~~i~yl~IPI~D~~~~dL~~~L~ea 190 (802)
.+.+|.+.|+|+++....|...++.+|++.|||....-+ +. .+ ..++.|.+||+.-..... +++
T Consensus 2 ~i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~-----~dV 76 (130)
T COG3453 2 DIRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITE-----ADV 76 (130)
T ss_pred CceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCH-----HHH
Confidence 467899999999999999999999999999999753211 11 11 247899999997533221 122
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 003695 191 FDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAA 241 (802)
Q Consensus 191 v~fIe~a~~~ggrVLVHC~aGvSRSaTVViAYLM~~~g~SledAi~~VRs~ 241 (802)
-.|-...-+.+++||.||+.|- ||-++=.--. ...||+.+++.++-+++
T Consensus 77 ~~f~~Al~eaegPVlayCrsGt-Rs~~ly~~~~-~~~gm~~de~~a~g~a~ 125 (130)
T COG3453 77 EAFQRALDEAEGPVLAYCRSGT-RSLNLYGLGE-LDGGMSRDEIEALGQAA 125 (130)
T ss_pred HHHHHHHHHhCCCEEeeecCCc-hHHHHHHHHH-HhcCCCHHHHHHHHHhh
Confidence 2333334456899999999997 8755422222 45699999888775543
No 36
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=98.02 E-value=8e-06 Score=94.61 Aligned_cols=96 Identities=17% Similarity=0.349 Sum_probs=76.4
Q ss_pred ccceeeecCCCCCCCccccccccCCCcccCCCCCCeEEEecCCceEEEecCCCChhhhHHHHHHHHHHHHH--hhcCCc-
Q 003695 272 MLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRY--EKAQGQ- 348 (802)
Q Consensus 272 v~RLYRVrg~S~~dpr~lVPk~ev~~sasSLNSrDcFILdt~s~IYVWiGk~Ss~~er~~ar~aA~~I~~~--e~~~~~- 348 (802)
-.-|.||+|... |....|+|..++||++|||||..+..+|.|.|.-+|..|+.+|.+++..|+.. .+..++
T Consensus 223 ~vMLlqVkGr~h------VqtRLVeP~~ssln~gdCF~lv~~~~lf~yvG~faNviEk~kas~lc~~I~~k~dLgCtAt~ 296 (919)
T KOG0445|consen 223 RVMLLQVKGRRH------VQTRLVEPRASSLNSGDCFLLVSPHCLFLYVGEFANVIEKAKASELCTLIQTKRDLGCTATY 296 (919)
T ss_pred ceEEEEEccccc------ceeEEechhhcccccCceEEEechhHHhhhhhHHHHHHHHhHHHHHHHHHhhcccCCceeEE
Confidence 345789999742 44457789999999999999999999999999999999999999999888765 344454
Q ss_pred EEEecCCCC----hhHhHHHhcCCCCCCC
Q 003695 349 ITSIKEGEE----PLEFWDALVRGQFFAD 373 (802)
Q Consensus 349 I~vV~EG~E----p~eFW~aLGGk~~y~~ 373 (802)
|+.|.+-.- ...||+.|||...|..
T Consensus 297 ivtit~~~~~t~~~~~Fw~llg~qs~~~~ 325 (919)
T KOG0445|consen 297 IVTITEINTHTHAAKDFWKLLGGQSSYQS 325 (919)
T ss_pred EEEEeccchhHHHHHHHHHHhCCccchhh
Confidence 455555331 4589999999888765
No 37
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.94 E-value=5.5e-05 Score=86.66 Aligned_cols=134 Identities=18% Similarity=0.206 Sum_probs=99.2
Q ss_pred eecCCeEECChhhhcCH----HHHHhCCCcEEEEcccCCCC-CccCCCcEEEEEEccCCC--CCchHHHHHHHHHHHHHH
Q 003695 125 RIADHIYLGSDAVAKNR----GILRQNGITHVLNCVGFVCP-EYFKGDLVYKTLWLQDSP--SEDITSILYDVFDYFEDV 197 (802)
Q Consensus 125 eI~p~LYLGs~~~A~d~----e~Lk~lGIt~VLNL~~e~~p-~~~~~~i~yl~IPI~D~~--~~dL~~~L~eav~fIe~a 197 (802)
.+..+||+|........ ..-....+..||+|.+.... ........|+++++.... ..++...|++++.|+...
T Consensus 291 ~~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~ 370 (451)
T PF04179_consen 291 PGTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSH 370 (451)
T ss_pred cCCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 35679999987662111 11234568899998654322 344567789999997543 346888899999999999
Q ss_pred Hhc--CCeEEEEcCCCCchHHHHHHHHHHhhcCCC----------------HHHHHHHHHHHcCcccCCchhHHHHHHH
Q 003695 198 REQ--GGRVFVHCCQGVSRSTSLVIAYLMWREGQS----------------FEDAFQYVKAARGVTNPNMGFACQLLLC 258 (802)
Q Consensus 198 ~~~--ggrVLVHC~aGvSRSaTVViAYLM~~~g~S----------------ledAi~~VRs~RP~I~PN~gF~~QL~e~ 258 (802)
+.+ +++|||||..|...|++|++|.|++.++.. ..+-+.+|.+.+|.++|..+.+++.-.|
T Consensus 371 L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 371 LSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred hcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 888 999999999999999999999999986542 2234666677778888888887776554
No 38
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=97.91 E-value=2.8e-05 Score=79.15 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHh----cCCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHHcCcccCCchhHHHHHH
Q 003695 187 LYDVFDYFEDVRE----QGGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFACQLLL 257 (802)
Q Consensus 187 L~eav~fIe~a~~----~ggrVLVHC~aGvSRSaTVViAYLM~~-----~g~SledAi~~VRs~RP~I~PN~gF~~QL~e 257 (802)
...++++++...+ .+++|+|||..|.|||++++++.+|.. ...++.+++..+|+.|+.+-.+..++..+..
T Consensus 152 ~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~~ 231 (235)
T PF00102_consen 152 PESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFCYM 231 (235)
T ss_dssp SHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHHHH
T ss_pred cchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHHHHHHHH
Confidence 3445556555444 349999999999999999999998754 2469999999999999998888777666653
No 39
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=97.70 E-value=0.00017 Score=78.60 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=43.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHHcCcccCCchhHHH
Q 003695 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFACQ 254 (802)
Q Consensus 201 ggrVLVHC~aGvSRSaTVViAYLM~~-----~g~SledAi~~VRs~RP~I~PN~gF~~Q 254 (802)
.++|+|||.+|+||||++++...+.. ...++.+++..+|..|+..-.+..+...
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F 287 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQYIF 287 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHHHH
Confidence 37999999999999999988876542 2557889999999999987676654443
No 40
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.68 E-value=8.5e-05 Score=73.10 Aligned_cols=59 Identities=17% Similarity=0.361 Sum_probs=44.2
Q ss_pred CCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHh
Q 003695 165 KGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMW 225 (802)
Q Consensus 165 ~~~i~yl~IPI~D~~~~dL~~~L~eav~fIe~a~~~ggrVLVHC~aGvSRSaTVViAYLM~ 225 (802)
..++.|++||+.|...+.- ..|++.++++... .++..+.+||.+|.||+.+..+.|.|.
T Consensus 90 ~~g~~Y~Ripitd~~~P~~-~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPDP-EDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HTT-EEEEEEE-TTS---H-HHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCCH-HHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3588999999999876654 7788889998888 678999999999999999888888764
No 41
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=97.60 E-value=0.00021 Score=78.77 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=44.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHh-----hcCCCHHHHHHHHHHHcCcccCCchhHHHHH
Q 003695 202 GRVFVHCCQGVSRSTSLVIAYLMW-----REGQSFEDAFQYVKAARGVTNPNMGFACQLL 256 (802)
Q Consensus 202 grVLVHC~aGvSRSaTVViAYLM~-----~~g~SledAi~~VRs~RP~I~PN~gF~~QL~ 256 (802)
++|+|||.+|+||||++|+...+. ....++.+++..+|..|+....+..+...+.
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F~y 307 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFCY 307 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHHHH
Confidence 799999999999999998875443 3467999999999999998877765554443
No 42
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=97.57 E-value=0.00028 Score=77.38 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=44.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHh-----hcCCCHHHHHHHHHHHcCcccCCchhHHHH
Q 003695 202 GRVFVHCCQGVSRSTSLVIAYLMW-----REGQSFEDAFQYVKAARGVTNPNMGFACQL 255 (802)
Q Consensus 202 grVLVHC~aGvSRSaTVViAYLM~-----~~g~SledAi~~VRs~RP~I~PN~gF~~QL 255 (802)
++|+|||.+|+||||++++..++. ....+..+++..+|..|+..-.+..+...+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 699999999999999999887543 346789999999999999887776655554
No 43
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=97.55 E-value=0.00039 Score=75.91 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=44.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHh-----hcCCCHHHHHHHHHHHcCcccCCchhHHHH
Q 003695 201 GGRVFVHCCQGVSRSTSLVIAYLMW-----REGQSFEDAFQYVKAARGVTNPNMGFACQL 255 (802)
Q Consensus 201 ggrVLVHC~aGvSRSaTVViAYLM~-----~~g~SledAi~~VRs~RP~I~PN~gF~~QL 255 (802)
.++|+|||.+|+||||++++...+. ....++.+++..+|..|+..-.+..+...+
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~QY~F~ 280 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDYVFC 280 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHHHHHH
Confidence 4799999999999999998877554 346689999999999999877766544433
No 44
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.48 E-value=0.00014 Score=77.30 Aligned_cols=122 Identities=15% Similarity=0.146 Sum_probs=75.9
Q ss_pred CCeEECChhhhcCHH--HHHhCCCcEEEEcccCCC--CCccCCCc----EEEEEEccCCCCCc-hHHHHHHHHHHHHHHH
Q 003695 128 DHIYLGSDAVAKNRG--ILRQNGITHVLNCVGFVC--PEYFKGDL----VYKTLWLQDSPSED-ITSILYDVFDYFEDVR 198 (802)
Q Consensus 128 p~LYLGs~~~A~d~e--~Lk~lGIt~VLNL~~e~~--p~~~~~~i----~yl~IPI~D~~~~d-L~~~L~eav~fIe~a~ 198 (802)
..+|.++.+...+.. .+...+|..++++.++.. -....... ....+...+..... -....+....++.-.+
T Consensus 53 ~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~ 132 (249)
T COG2365 53 IIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPTREDAAERLVELLQLLA 132 (249)
T ss_pred eeEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCccchhhHHHHHHHHHHHh
Confidence 457778877776655 777788888888764111 01111111 11112222221111 1122344445555555
Q ss_pred hcC-CeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCcccCCc
Q 003695 199 EQG-GRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNM 249 (802)
Q Consensus 199 ~~g-grVLVHC~aGvSRSaTVViAYLM~~~g~SledAi~~VRs~RP~I~PN~ 249 (802)
.++ ++||+||.+|..|+|.+++.|++...+.....+-++++..++......
T Consensus 133 ~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 133 DAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred hcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 544 999999999999999999999999988888888888888877654444
No 45
>PHA02738 hypothetical protein; Provisional
Probab=97.37 E-value=0.00069 Score=74.63 Aligned_cols=56 Identities=13% Similarity=0.054 Sum_probs=44.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHh-----hcCCCHHHHHHHHHHHcCcccCCchhHHHHH
Q 003695 201 GGRVFVHCCQGVSRSTSLVIAYLMW-----REGQSFEDAFQYVKAARGVTNPNMGFACQLL 256 (802)
Q Consensus 201 ggrVLVHC~aGvSRSaTVViAYLM~-----~~g~SledAi~~VRs~RP~I~PN~gF~~QL~ 256 (802)
.++|+|||.+|+||||++++...+. ....++.+++..||..|+..-.+..+...+.
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F~y 287 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFFCY 287 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHHHH
Confidence 3689999999999999987766433 2356889999999999998877766554443
No 46
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.35 E-value=0.00046 Score=77.53 Aligned_cols=98 Identities=19% Similarity=0.219 Sum_probs=70.3
Q ss_pred cCCCcEEEEEEccCC---CCCchHHH-HHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHH
Q 003695 164 FKGDLVYKTLWLQDS---PSEDITSI-LYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVK 239 (802)
Q Consensus 164 ~~~~i~yl~IPI~D~---~~~dL~~~-L~eav~fIe~a~~~ggrVLVHC~aGvSRSaTVViAYLM~~~g~SledAi~~VR 239 (802)
...++.|+.+...-. +....... ...+-+|++.....+.=|+|||.+|++|++-++++|||...+|+..+|++.+.
T Consensus 83 ~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~ 162 (393)
T KOG2386|consen 83 EERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFA 162 (393)
T ss_pred cccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHH
Confidence 344556665544322 22222233 33444567777778899999999999999999999999999999999999999
Q ss_pred HHcCcccCCchhHHHHHHHHHH
Q 003695 240 AARGVTNPNMGFACQLLLCQKR 261 (802)
Q Consensus 240 s~RP~I~PN~gF~~QL~e~Ekk 261 (802)
..|+-..-....+..|...+..
T Consensus 163 ~~r~~gi~k~dyi~~L~~~~~~ 184 (393)
T KOG2386|consen 163 DARPPGIEKQDYIDALYSRYHD 184 (393)
T ss_pred HhCCCccCchHHHHHHhhcccc
Confidence 9998665555556666544443
No 47
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=96.96 E-value=0.0023 Score=78.31 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=59.2
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHhc-CCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHHcCcccCC
Q 003695 175 LQDSPSEDITSILYDVFDYFEDVREQ-GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPN 248 (802)
Q Consensus 175 I~D~~~~dL~~~L~eav~fIe~a~~~-ggrVLVHC~aGvSRSaTVViAYLM~~-----~g~SledAi~~VRs~RP~I~PN 248 (802)
+.|++.++-...|-+.++.|..+++. +-+|+|||.+|+||||+++++=+|.. +....-+.++.+|..|..+-++
T Consensus 1036 WPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT 1115 (1144)
T KOG0792|consen 1036 WPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQT 1115 (1144)
T ss_pred cccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccc
Confidence 34665555545666666666666665 56999999999999999876544432 4667889999999999988888
Q ss_pred chhHHHH
Q 003695 249 MGFACQL 255 (802)
Q Consensus 249 ~gF~~QL 255 (802)
..+....
T Consensus 1116 ~~QYkFV 1122 (1144)
T KOG0792|consen 1116 LSQYKFV 1122 (1144)
T ss_pred hHHhhHH
Confidence 7765544
No 48
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.93 E-value=0.0022 Score=68.58 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=53.6
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHH---hcCCeEEEEcCCCCchHHHHHHHH-HHhhcCCC-------------HHHHHHH
Q 003695 175 LQDSPSEDITSILYDVFDYFEDVR---EQGGRVFVHCCQGVSRSTSLVIAY-LMWREGQS-------------FEDAFQY 237 (802)
Q Consensus 175 I~D~~~~dL~~~L~eav~fIe~a~---~~ggrVLVHC~aGvSRSaTVViAY-LM~~~g~S-------------ledAi~~ 237 (802)
..|...+++ .+..++++... -++++++|||.||+||+||+++.- |+....-+ ..+.+..
T Consensus 193 W~D~~~p~i----~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~ 268 (302)
T COG5599 193 WVDFNVPDI----RSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLS 268 (302)
T ss_pred ccccCCcCH----HHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHH
Confidence 346666655 34555555544 357999999999999999998776 44432222 2345667
Q ss_pred HHHHcCcccCCchhHHHHHHHHHHh
Q 003695 238 VKAARGVTNPNMGFACQLLLCQKRV 262 (802)
Q Consensus 238 VRs~RP~I~PN~gF~~QL~e~EkkL 262 (802)
+|.+|-...-|..++..|.+.-..+
T Consensus 269 LRsQRmkmVQn~~Qf~flY~~~~~l 293 (302)
T COG5599 269 LRSQRMKMVQNKTQFKFLYDAFLEL 293 (302)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 7777776666666666655443443
No 49
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=96.45 E-value=0.0037 Score=70.65 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=67.6
Q ss_pred CHHHHHhCCCcEEEEcccCCCCCcc---------------CCCcEEEEEEccCCCCCchHHHHHHHHHHHHHH------H
Q 003695 140 NRGILRQNGITHVLNCVGFVCPEYF---------------KGDLVYKTLWLQDSPSEDITSILYDVFDYFEDV------R 198 (802)
Q Consensus 140 d~e~Lk~lGIt~VLNL~~e~~p~~~---------------~~~i~yl~IPI~D~~~~dL~~~L~eav~fIe~a------~ 198 (802)
+...++.+|+-.|-|+.+.....|. ..-+.|+.+-..|+..+.-. ..++.|+++. +
T Consensus 372 ee~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dP---g~vLnFLe~V~~rq~~l 448 (600)
T KOG0790|consen 372 EEGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDP---GGVLNFLEEVNHRQESL 448 (600)
T ss_pred cccchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCc---cHHHHHHHHhhhhhccc
Confidence 3345666777777766432111111 01235556666676543211 2244555443 2
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHH-HHh---hc----CCCHHHHHHHHHHHcCcccCCchhHHHH
Q 003695 199 EQGGRVFVHCCQGVSRSTSLVIAY-LMW---RE----GQSFEDAFQYVKAARGVTNPNMGFACQL 255 (802)
Q Consensus 199 ~~ggrVLVHC~aGvSRSaTVViAY-LM~---~~----g~SledAi~~VRs~RP~I~PN~gF~~QL 255 (802)
-..++|.|||.||+||++++++-= ||- .. .++....+++||..|....-...+.+.+
T Consensus 449 ~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFi 513 (600)
T KOG0790|consen 449 MDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFI 513 (600)
T ss_pred cccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHH
Confidence 345799999999999999975443 332 22 4588899999999998766655554444
No 50
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.26 E-value=0.015 Score=65.13 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=42.7
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHh-h--c---CCCHHHHHHHHHHHcCcccCCchhHHHHH
Q 003695 200 QGGRVFVHCCQGVSRSTSLVIAYLMW-R--E---GQSFEDAFQYVKAARGVTNPNMGFACQLL 256 (802)
Q Consensus 200 ~ggrVLVHC~aGvSRSaTVViAYLM~-~--~---g~SledAi~~VRs~RP~I~PN~gF~~QL~ 256 (802)
..+++.|||.+|+||++++++...+. . . .....+.+..+|..|+.+..+..+...+.
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~~ 360 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYLFIY 360 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 46899999999999999999655222 2 1 24588888899999998777766654444
No 51
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=95.35 E-value=0.094 Score=65.26 Aligned_cols=9 Identities=22% Similarity=0.324 Sum_probs=4.3
Q ss_pred cCcccCCCC
Q 003695 65 RPVEQWPRA 73 (802)
Q Consensus 65 ~~~~~~p~~ 73 (802)
|+-+-|+++
T Consensus 772 rIpFGF~~R 780 (1605)
T KOG0260|consen 772 RIPFGFPKR 780 (1605)
T ss_pred ccccCCCcc
Confidence 444445554
No 52
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=94.95 E-value=0.08 Score=59.16 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=47.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHH-HHhhcCC----CHHHHHHHHHHHcCcccCCchhHHHHHHHHHHh
Q 003695 200 QGGRVFVHCCQGVSRSTSLVIAY-LMWREGQ----SFEDAFQYVKAARGVTNPNMGFACQLLLCQKRV 262 (802)
Q Consensus 200 ~ggrVLVHC~aGvSRSaTVViAY-LM~~~g~----SledAi~~VRs~RP~I~PN~gF~~QL~e~EkkL 262 (802)
..+.++|||.+|+||++|+++.- |.+..+- +.-..+..+|..|+...++..++-.|.++-...
T Consensus 286 ~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~mVqte~Qyvfl~~c~~~~ 353 (374)
T KOG0791|consen 286 SKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLMVQTEDQYVFLHQCVLES 353 (374)
T ss_pred CCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccccccchHHHHHHHHHHHHHH
Confidence 36899999999999999997766 3333222 344566677888899999998888888765443
No 53
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=94.66 E-value=0.18 Score=62.85 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=5.1
Q ss_pred hcCCCHHHHHHHH
Q 003695 226 REGQSFEDAFQYV 238 (802)
Q Consensus 226 ~~g~SledAi~~V 238 (802)
.++++ .+|++++
T Consensus 1025 e~rls-~eaf~w~ 1036 (1605)
T KOG0260|consen 1025 EYRLS-SEAFEWV 1036 (1605)
T ss_pred Hhccc-HHHHHHH
Confidence 34444 3444443
No 54
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.86 E-value=0.17 Score=61.66 Aligned_cols=35 Identities=14% Similarity=0.389 Sum_probs=30.9
Q ss_pred cCCCcccCCCCCCeEEEecCCceEEEecCCCChhh
Q 003695 294 LNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMM 328 (802)
Q Consensus 294 ev~~sasSLNSrDcFILdt~s~IYVWiGk~Ss~~e 328 (802)
-+..+...|+.++||+|+++.++|+|+|..++...
T Consensus 880 ~VraS~e~l~negiYll~nG~~~ylwvg~sv~~~l 914 (1007)
T KOG1984|consen 880 AVRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDL 914 (1007)
T ss_pred ceecchhhccCCceEEEecCcEEEEEecCCCCHHH
Confidence 44667788999999999999999999999998755
No 55
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=92.24 E-value=0.33 Score=48.08 Aligned_cols=101 Identities=22% Similarity=0.266 Sum_probs=54.7
Q ss_pred ecCCeEECChhhhcCHHHHHhCCCcEEEEcccCCCCCccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhc---CC
Q 003695 126 IADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ---GG 202 (802)
Q Consensus 126 I~p~LYLGs~~~A~d~e~Lk~lGIt~VLNL~~e~~p~~~~~~i~yl~IPI~D~~~~dL~~~L~eav~fIe~a~~~---gg 202 (802)
|.++||.+..... .+...=+|-.++-++ +.|..+ -.|.+.-++ .++.+-+..+++.++. .+
T Consensus 4 i~drLyf~~~~~~-----p~~~~~~~yF~iD~~---------l~Y~~F-~~DFGPlnL-~~lyrfc~~l~~~L~~~~~~~ 67 (141)
T PF14671_consen 4 IPDRLYFASLRNK-----PKSTPNTHYFSIDDE---------LVYENF-YADFGPLNL-AQLYRFCCKLNKKLKSPELKK 67 (141)
T ss_dssp SSSSEEEEE-SS---------BTTEEEEE-TTT---------S----S-SS------H-HHHHHHHHHHHHHHH-GGGTT
T ss_pred CCCcEEEEEeCCC-----CCCCCCcEEEEeCCe---------EEEecc-cCcCCCccH-HHHHHHHHHHHHHHcCHHhcC
Confidence 5568888876542 222233455554221 233322 245565666 5566666667766654 67
Q ss_pred eEEEEcCCCCc--h--HHHHHHHHHHhhcCCCHHHHHHHHHHHc
Q 003695 203 RVFVHCCQGVS--R--STSLVIAYLMWREGQSFEDAFQYVKAAR 242 (802)
Q Consensus 203 rVLVHC~aGvS--R--SaTVViAYLM~~~g~SledAi~~VRs~R 242 (802)
+.+|||...-. | ++.++.||+|...||+.++|++.+...-
T Consensus 68 k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~ 111 (141)
T PF14671_consen 68 KKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQ 111 (141)
T ss_dssp SEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT
T ss_pred CeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcC
Confidence 88888876544 3 4889999999999999999999987764
No 56
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=89.63 E-value=0.28 Score=41.88 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=28.0
Q ss_pred cccccccccccCCceEEEEEccCCCCCCCceEEEEecCce
Q 003695 718 SKVESSSFQVLDSRSVYILLAPDTSLGQMSRVFCMSGWGV 757 (802)
Q Consensus 718 ~k~~~~~~~~ldsks~~i~~~p~~~~~~~~~lyiwvg~~~ 757 (802)
.+.-.++.+.|++..+||+-... .||+|+|+.-
T Consensus 5 ~~~~~~s~~~L~s~~~yIld~~~-------~i~vW~G~~~ 37 (76)
T PF00626_consen 5 PEQVPLSQSSLNSDDCYILDCGY-------EIFVWVGKKS 37 (76)
T ss_dssp EEEESSSGGGEETTSEEEEEESS-------EEEEEEHTTS
T ss_pred CCcCCCCHHHcCCCCEEEEEeCC-------CcEEEEeccC
Confidence 45566888999999999998766 7999999983
No 57
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=88.79 E-value=0.96 Score=54.84 Aligned_cols=32 Identities=16% Similarity=0.524 Sum_probs=28.2
Q ss_pred CcccCCCCCCeEEEecCCceEEEecCCCChhh
Q 003695 297 PVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMM 328 (802)
Q Consensus 297 ~sasSLNSrDcFILdt~s~IYVWiGk~Ss~~e 328 (802)
...+.|+++++|+||++.+||+|+|+.++...
T Consensus 738 aT~s~le~~GlYLidtg~~iflw~g~d~~p~L 769 (861)
T COG5028 738 ATSSLLESGGLYLIDTGQKIFLWFGKDAVPSL 769 (861)
T ss_pred hhHHHHhcCCeEEEEcCCEEEEEecCCCCHHH
Confidence 34578899999999999999999999999744
No 58
>PTZ00395 Sec24-related protein; Provisional
Probab=87.12 E-value=2.2 Score=54.87 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=30.2
Q ss_pred cCCCcccCCCCCCeEEEecCCceEEEecCCCChhh
Q 003695 294 LNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMM 328 (802)
Q Consensus 294 ev~~sasSLNSrDcFILdt~s~IYVWiGk~Ss~~e 328 (802)
.+..+...|.++++|||+.+..||+|+|+.++...
T Consensus 1433 ~LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~PqL 1467 (1560)
T PTZ00395 1433 TIPSSAEKIYSNGIYLLDACTHFYLYFGFHSDANF 1467 (1560)
T ss_pred cccchHHHhcCCcEEEEECCCEEEEEECCCCCHHH
Confidence 34567788999999999999999999999998644
No 59
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=86.56 E-value=1.4 Score=53.01 Aligned_cols=62 Identities=13% Similarity=0.313 Sum_probs=42.8
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHh----h--cCCCHHHHHHHHHHHcCcc-cCCchhHHHHHHHHHH
Q 003695 200 QGGRVFVHCCQGVSRSTSLVIAYLMW----R--EGQSFEDAFQYVKAARGVT-NPNMGFACQLLLCQKR 261 (802)
Q Consensus 200 ~ggrVLVHC~aGvSRSaTVViAYLM~----~--~g~SledAi~~VRs~RP~I-~PN~gF~~QL~e~Ekk 261 (802)
+.-+|+|||..|-||+++-++-=++. + ..++....++++|..|+.+ .-...|.-.|...-++
T Consensus 926 RScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~GmVaTkdQFef~l~aVAeE 994 (1004)
T KOG0793|consen 926 RSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGMVATKDQFEFALTAVAEE 994 (1004)
T ss_pred CCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcceeehhhhHHHHHHHHHH
Confidence 35789999999999999865443322 2 2446777899999999965 4455566566544333
No 60
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=86.41 E-value=1.2 Score=55.98 Aligned_cols=58 Identities=17% Similarity=0.353 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhc----CCeEEEEcCCCCchHHHHHHHHHH-----hhcCCCHHHHHHHHHHHcCcc
Q 003695 188 YDVFDYFEDVREQ----GGRVFVHCCQGVSRSTSLVIAYLM-----WREGQSFEDAFQYVKAARGVT 245 (802)
Q Consensus 188 ~eav~fIe~a~~~----ggrVLVHC~aGvSRSaTVViAYLM-----~~~g~SledAi~~VRs~RP~I 245 (802)
-..+.|+.+.+.- .|+++|||.+|+||+|+.++-=-| .....+...-+..+|.+|...
T Consensus 713 t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~m 779 (1087)
T KOG4228|consen 713 TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNM 779 (1087)
T ss_pred hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccc
Confidence 3456777776653 499999999999999986543222 223345555555666666543
No 61
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=85.77 E-value=0.66 Score=41.25 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=25.4
Q ss_pred cccccccCCceEEEEEccCCCCCCCceEEEEecCcee
Q 003695 722 SSSFQVLDSRSVYILLAPDTSLGQMSRVFCMSGWGVK 758 (802)
Q Consensus 722 ~~~~~~ldsks~~i~~~p~~~~~~~~~lyiwvg~~~~ 758 (802)
.+..++|||+.+||+-.+ ..||+|+|+.-+
T Consensus 17 ~~~~~~L~s~d~fild~~-------~~iyvW~G~~as 46 (90)
T smart00262 17 PFSQGSLNSGDCYILDTG-------SEIYVWVGKKSS 46 (90)
T ss_pred CCCHHHCCCCCEEEEECC-------CEEEEEECCCCC
Confidence 466789999999999875 469999999864
No 62
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.47 E-value=2.1 Score=50.76 Aligned_cols=39 Identities=31% Similarity=0.510 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHH-HHHHh
Q 003695 187 LYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVI-AYLMW 225 (802)
Q Consensus 187 L~eav~fIe~a~~~ggrVLVHC~aGvSRSaTVVi-AYLM~ 225 (802)
|..++...++....+..|||||..|-.|++-+++ |-||.
T Consensus 360 Laga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlL 399 (717)
T KOG4471|consen 360 LAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLL 399 (717)
T ss_pred HHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHh
Confidence 4455556666667889999999999999988765 44553
No 63
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.11 E-value=2.9 Score=51.28 Aligned_cols=32 Identities=19% Similarity=0.518 Sum_probs=28.3
Q ss_pred CCcccCCCCCCeEEEecCCceEEEecCCCChh
Q 003695 296 YPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVM 327 (802)
Q Consensus 296 ~~sasSLNSrDcFILdt~s~IYVWiGk~Ss~~ 327 (802)
...+..|.+++.|++|++..+|+|.|+.|...
T Consensus 764 ~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P~ 795 (887)
T KOG1985|consen 764 NLTAELLSRRGLYLMDTGTTLFLWVGSNADPS 795 (887)
T ss_pred chHHHHhccCceEEEecCcEEEEEEcCCCCcc
Confidence 34568899999999999999999999999863
No 64
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=79.52 E-value=2.6 Score=53.14 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=34.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHHcCccc
Q 003695 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTN 246 (802)
Q Consensus 201 ggrVLVHC~aGvSRSaTVViAYLM~~-----~g~SledAi~~VRs~RP~I~ 246 (802)
.+++.|||..|.+|+++++++-+... +-++.=+|++.+|..||...
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv 1068 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMV 1068 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCcccc
Confidence 69999999999999999887776543 12345567777777777653
No 65
>PLN00162 transport protein sec23; Provisional
Probab=68.16 E-value=15 Score=45.63 Aligned_cols=70 Identities=7% Similarity=0.035 Sum_probs=45.8
Q ss_pred CCCcccCCCCCCeEEEecCCceEEEecCCC-----------Chhh-----hHHHHHHHHHHHHHhhcCCcEEEecCCCCh
Q 003695 295 NYPVAQGFDTRGAFIVLVPSAIYVWIGKNC-----------SVMM-----SNRAREAANQVIRYEKAQGQITSIKEGEEP 358 (802)
Q Consensus 295 v~~sasSLNSrDcFILdt~s~IYVWiGk~S-----------s~~e-----r~~ar~aA~~I~~~e~~~~~I~vV~EG~Ep 358 (802)
+..+..+|.+.++|+||++..|+||+|... ...+ .+..+.-|+.|...--+...++++++|.-.
T Consensus 635 v~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~~~~~~~~~~~~~~~~~l~~p~~~a~~~~~~Rfp~Pr~i~~~~~~Sq 714 (761)
T PLN00162 635 VLLDVASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAIIKERFPVPRLVVCDQHGSQ 714 (761)
T ss_pred eecchhhccCCceEEEeCCCEEEEEecCcccchhhcCCCCCcchhhHHHHHHhHHHHHHHHHhcCCCCCeEEEeCCCCcH
Confidence 345778899999999999999999999421 1111 122223344444433344578899999887
Q ss_pred hHhHHH
Q 003695 359 LEFWDA 364 (802)
Q Consensus 359 ~eFW~a 364 (802)
.-|.-+
T Consensus 715 aRfl~~ 720 (761)
T PLN00162 715 ARFLLA 720 (761)
T ss_pred HHHHHH
Confidence 777543
No 66
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=67.54 E-value=11 Score=42.58 Aligned_cols=23 Identities=35% Similarity=0.764 Sum_probs=17.4
Q ss_pred HhcCCeEEEEcCCCCchHHHHHH
Q 003695 198 REQGGRVFVHCCQGVSRSTSLVI 220 (802)
Q Consensus 198 ~~~ggrVLVHC~aGvSRSaTVVi 220 (802)
..+|..|||||..|..|++-++.
T Consensus 228 ~~~~~~Vlvh~~dGwDrt~q~~s 250 (353)
T PF06602_consen 228 HDEGSSVLVHCSDGWDRTSQLSS 250 (353)
T ss_dssp HTT--EEEEECTTSSSHHHHHHH
T ss_pred hccCceEEEEcCCCCcccHHHHH
Confidence 36899999999999999966544
No 67
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=60.07 E-value=27 Score=31.39 Aligned_cols=29 Identities=31% Similarity=0.562 Sum_probs=19.3
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 003695 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (802)
Q Consensus 199 ~~ggrVLVHC~aGvSRSaTVViAYLM~~~g~S 230 (802)
.++++|+|||..|. ||... +.+| ...|..
T Consensus 59 ~~~~~ivvyC~~G~-rs~~a-~~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGGI-RCEKA-SAYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCch-hHHHH-HHHH-HHhCCc
Confidence 46789999999884 88643 3344 444553
No 68
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=57.21 E-value=15 Score=43.88 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=23.9
Q ss_pred HHHHHHHHHh-cCCeEEEEcCCCCchHHHHHHH
Q 003695 190 VFDYFEDVRE-QGGRVFVHCCQGVSRSTSLVIA 221 (802)
Q Consensus 190 av~fIe~a~~-~ggrVLVHC~aGvSRSaTVViA 221 (802)
+..+|.+++. +|-.|||||..|..|+..|+..
T Consensus 332 ~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SL 364 (573)
T KOG1089|consen 332 AAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSL 364 (573)
T ss_pred HHHHHHHHHHhCCCeEEEEccCCcchhHHHHHH
Confidence 3335556666 6699999999999999766543
No 69
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=54.25 E-value=26 Score=31.31 Aligned_cols=69 Identities=20% Similarity=0.174 Sum_probs=38.9
Q ss_pred HHHhCCCcEEEEcccCCCCCccC-CCcE-EEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHH
Q 003695 143 ILRQNGITHVLNCVGFVCPEYFK-GDLV-YKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVI 220 (802)
Q Consensus 143 ~Lk~lGIt~VLNL~~e~~p~~~~-~~i~-yl~IPI~D~~~~dL~~~L~eav~fIe~a~~~ggrVLVHC~aGvSRSaTVVi 220 (802)
.+...+-..||++... .++.. .-.. ..++|+.+...... ... ..+++.++|+|..|. || ..++
T Consensus 14 ~~~~~~~~~liDvR~~--~e~~~~~i~~~~~~ip~~~~~~~~~---------~~~--~~~~~~ivv~C~~G~-rS-~~aa 78 (110)
T COG0607 14 LLLAGEDAVLLDVREP--EEYERGHIPGAAINIPLSELKAAEN---------LLE--LPDDDPIVVYCASGV-RS-AAAA 78 (110)
T ss_pred HhhccCCCEEEeccCh--hHhhhcCCCcceeeeecccchhhhc---------ccc--cCCCCeEEEEeCCCC-Ch-HHHH
Confidence 3444456778887543 12222 1223 66777765433211 000 567899999999998 77 4445
Q ss_pred HHHHhh
Q 003695 221 AYLMWR 226 (802)
Q Consensus 221 AYLM~~ 226 (802)
.+|...
T Consensus 79 ~~L~~~ 84 (110)
T COG0607 79 AALKLA 84 (110)
T ss_pred HHHHHc
Confidence 555544
No 70
>PLN02160 thiosulfate sulfurtransferase
Probab=46.56 E-value=28 Score=33.78 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=20.0
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 003695 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (802)
Q Consensus 198 ~~~ggrVLVHC~aGvSRSaTVViAYLM~~~g~S 230 (802)
+..+++|+|||..|. ||... +.++...|+.
T Consensus 78 ~~~~~~IivyC~sG~-RS~~A--a~~L~~~G~~ 107 (136)
T PLN02160 78 LNPADDILVGCQSGA-RSLKA--TTELVAAGYK 107 (136)
T ss_pred cCCCCcEEEECCCcH-HHHHH--HHHHHHcCCC
Confidence 356789999999995 88654 3333444554
No 71
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=44.66 E-value=41 Score=30.69 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=18.0
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003695 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (802)
Q Consensus 200 ~ggrVLVHC~aGvSRSaTVViAYLM~~~g~ 229 (802)
++.+|+|||..|. ||.. ++..| +..|+
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~~~L-~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GAQSL-INAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HHHHH-HHCCC
Confidence 4679999999997 7733 33333 44565
No 72
>PRK01415 hypothetical protein; Validated
Probab=44.52 E-value=40 Score=36.51 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=19.6
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003695 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (802)
Q Consensus 199 ~~ggrVLVHC~aGvSRSaTVViAYLM~~~g~ 229 (802)
.++++|+++|+.|+ || ..++++|.. .|.
T Consensus 169 ~k~k~Iv~yCtgGi-Rs-~kAa~~L~~-~Gf 196 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RC-EKSTSLLKS-IGY 196 (247)
T ss_pred cCCCeEEEECCCCh-HH-HHHHHHHHH-cCC
Confidence 46789999999996 87 444566543 344
No 73
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=37.67 E-value=1.1e+02 Score=26.96 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=41.2
Q ss_pred hCCCcEEEEcccCCCCCccCCCc-EEEEEEccCC---CCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHH-
Q 003695 146 QNGITHVLNCVGFVCPEYFKGDL-VYKTLWLQDS---PSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVI- 220 (802)
Q Consensus 146 ~lGIt~VLNL~~e~~p~~~~~~i-~yl~IPI~D~---~~~dL~~~L~eav~fIe~a~~~ggrVLVHC~aGvSRSaTVVi- 220 (802)
..+=..||+|.... ++....+ .-.++|.... ........+.+..........++..|+|+|..|. |+...+.
T Consensus 10 ~~~~~~liD~R~~~--~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 10 ENESVLLIDVRSPE--EYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp TTTTEEEEEESSHH--HHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHH
T ss_pred hCCCeEEEEeCCHH--HHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHH
Confidence 44556788875321 1212222 2367777433 2222223344444444444567789999997766 4433333
Q ss_pred --HHHHhhcCCC
Q 003695 221 --AYLMWREGQS 230 (802)
Q Consensus 221 --AYLM~~~g~S 230 (802)
+|++...|+.
T Consensus 87 ~~~~~l~~~g~~ 98 (113)
T PF00581_consen 87 RVAWILKKLGFK 98 (113)
T ss_dssp HHHHHHHHTTTS
T ss_pred HHHHHHHHcCCC
Confidence 3434444553
No 74
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=34.53 E-value=54 Score=30.32 Aligned_cols=31 Identities=16% Similarity=-0.065 Sum_probs=20.4
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 003695 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (802)
Q Consensus 198 ~~~ggrVLVHC~aGvSRSaTVViAYLM~~~g~S 230 (802)
+..+.+|+|+|..| ++.++.++.+|. ..|+.
T Consensus 76 ~~~~~~vv~~c~~g-~~~a~~~~~~l~-~~G~~ 106 (122)
T cd01448 76 ISNDDTVVVYDDGG-GFFAARAWWTLR-YFGHE 106 (122)
T ss_pred CCCCCEEEEECCCC-CccHHHHHHHHH-HcCCC
Confidence 34578999999998 555566555444 44543
No 75
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=34.26 E-value=47 Score=36.75 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=16.3
Q ss_pred eEEEEcCCCCchHHHHHHH
Q 003695 203 RVFVHCCQGVSRSTSLVIA 221 (802)
Q Consensus 203 rVLVHC~aGvSRSaTVViA 221 (802)
.|-|=|++|..||++++=+
T Consensus 244 tIaiGCTGG~HRSV~iae~ 262 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAER 262 (284)
T ss_pred EEEEEcCCCcCcHHHHHHH
Confidence 6889999999999988643
No 76
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=33.23 E-value=56 Score=36.43 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=19.5
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003695 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (802)
Q Consensus 200 ~ggrVLVHC~aGvSRSaTVViAYLM~~~g~ 229 (802)
++++|+|||..|+ ||. .+++||.. .|.
T Consensus 170 kdk~IvvyC~~G~-Rs~-~aa~~L~~-~Gf 196 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCE-KASAWMKH-EGF 196 (314)
T ss_pred CcCeEEEECCCCc-HHH-HHHHHHHH-cCC
Confidence 5789999999997 874 44566654 454
No 77
>smart00400 ZnF_CHCC zinc finger.
Probab=33.19 E-value=39 Score=27.76 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=24.3
Q ss_pred EEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHH
Q 003695 205 FVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYV 238 (802)
Q Consensus 205 LVHC~aGvSRSaTVViAYLM~~~g~SledAi~~V 238 (802)
..||.+ -++.+- +|.++|+.+|+++.+|++.+
T Consensus 23 ~~~Cf~-cg~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 478874 344444 48888999999999999875
No 78
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=32.63 E-value=87 Score=28.02 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=18.3
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 003695 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (802)
Q Consensus 200 ~ggrVLVHC~aGvSRSaTVViAYLM~~~g~S 230 (802)
++.+|+|+|..|. ||... +.+|. ..|..
T Consensus 57 ~~~~vv~~c~~g~-rs~~~-~~~l~-~~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHGG-RSMQV-AQWLL-RQGFE 84 (101)
T ss_pred CCCeEEEEeCCCc-hHHHH-HHHHH-HcCCc
Confidence 5789999999984 77443 33444 34553
No 79
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=32.00 E-value=66 Score=26.64 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHH
Q 003695 216 TSLVIAYLMWREGQSFEDAFQYVKAA 241 (802)
Q Consensus 216 aTVViAYLM~~~g~SledAi~~VRs~ 241 (802)
..-+.+.||..+|++.++|+++++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 45577889999999999999999875
No 80
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=29.98 E-value=60 Score=28.97 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=18.6
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003695 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (802)
Q Consensus 199 ~~ggrVLVHC~aGvSRSaTVViAYLM~~~g~ 229 (802)
..+++|+|||..|. ||.. ++..| ...|+
T Consensus 59 ~~~~~ivv~C~~G~-rs~~-aa~~L-~~~G~ 86 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQF-VAELL-AERGY 86 (100)
T ss_pred CCCCeEEEEcCCCC-cHHH-HHHHH-HHcCc
Confidence 46789999999996 7743 33333 44455
No 81
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=29.17 E-value=89 Score=31.34 Aligned_cols=30 Identities=17% Similarity=0.073 Sum_probs=21.5
Q ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 003695 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (802)
Q Consensus 199 ~~ggrVLVHC~aGvSRSaTVViAYLM~~~g~S 230 (802)
.++.+|+|+|..|..||.. ++++++..|..
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 4678999999998877765 45555555553
No 82
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=28.68 E-value=1.1e+02 Score=31.94 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHH
Q 003695 183 ITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLM 224 (802)
Q Consensus 183 L~~~L~eav~fIe~a~~~ggrVLVHC~aGvSRSaTVViAYLM 224 (802)
+.+.+.++++.|.+++.++++|+|. |.|+|++++..+-+
T Consensus 23 ~~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~ 61 (196)
T PRK10886 23 LPDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAA 61 (196)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHH
Confidence 3456788888999999999999987 88888876555433
No 83
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=27.96 E-value=96 Score=29.37 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=20.7
Q ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003695 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (802)
Q Consensus 198 ~~~ggrVLVHC~aGvSRSaTVViAYLM~~~g~ 229 (802)
+.++.+|+|+|..|-.||.. ++++++..|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~--a~~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQS--LAWLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHH--HHHHHHHcCC
Confidence 45678999999855457664 3466666665
No 84
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=27.59 E-value=62 Score=35.71 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHH----HhcCC---eEEEEcCCCCchHHHHHHH
Q 003695 185 SILYDVFDYFEDV----REQGG---RVFVHCCQGVSRSTSLVIA 221 (802)
Q Consensus 185 ~~L~eav~fIe~a----~~~gg---rVLVHC~aGvSRSaTVViA 221 (802)
..+..+.++++.+ .++|+ .|-|=|++|..||++++-.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e~ 265 (288)
T PRK05416 222 EFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAER 265 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHHH
Confidence 3445555555433 33443 5889999999999988543
No 85
>PRK05320 rhodanese superfamily protein; Provisional
Probab=27.48 E-value=95 Score=33.65 Aligned_cols=27 Identities=22% Similarity=0.355 Sum_probs=19.2
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003695 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (802)
Q Consensus 200 ~ggrVLVHC~aGvSRSaTVViAYLM~~~g~ 229 (802)
++++|+++|..|+ ||.. ++++|.. .|.
T Consensus 174 kdk~IvvyC~~G~-Rs~~-Aa~~L~~-~Gf 200 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEK-AAIHMQE-VGI 200 (257)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHHH-cCC
Confidence 5789999999996 7744 4566643 344
No 86
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=26.12 E-value=2e+02 Score=30.77 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=36.1
Q ss_pred CCCchHHHHHHHHHHHHHHH----hcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHH
Q 003695 179 PSEDITSILYDVFDYFEDVR----EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQ 236 (802)
Q Consensus 179 ~~~dL~~~L~eav~fIe~a~----~~ggrVLVHC~aGvSRSaTVViAYLM~~~g~SledAi~ 236 (802)
..+.+...+..++.|+++.+ .+|++|+|||++..- =|++|+-.|.+.++.+.
T Consensus 130 ~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsL------R~i~~~l~g~s~~~i~~ 185 (214)
T KOG0235|consen 130 DGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSL------RAIVKHLEGISDEAIKE 185 (214)
T ss_pred CCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHH------HHHHHHHhcCCHhhhhh
Confidence 34567677888888887644 578999999987333 34567777888665443
No 87
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=26.01 E-value=52 Score=41.92 Aligned_cols=157 Identities=13% Similarity=0.175 Sum_probs=0.0
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHhcC--CeEEEEcCCCCchHHHHHHHH--HHhhcCCCHHHHHHHHHHHcCcccCCch
Q 003695 175 LQDSPSEDITSILYDVFDYFEDVREQG--GRVFVHCCQGVSRSTSLVIAY--LMWREGQSFEDAFQYVKAARGVTNPNMG 250 (802)
Q Consensus 175 I~D~~~~dL~~~L~eav~fIe~a~~~g--grVLVHC~aGvSRSaTVViAY--LM~~~g~SledAi~~VRs~RP~I~PN~g 250 (802)
+.-+....+.-.++.|++-|.+..... |.||-|| +|+|-+--||+.. +|......+..|+ +|+|-..
T Consensus 669 LKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHc-MGLGKTlQVvtflhTvL~c~klg~ktaL--------vV~PlNt 739 (1567)
T KOG1015|consen 669 LKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHC-MGLGKTLQVVTFLHTVLLCDKLGFKTAL--------VVCPLNT 739 (1567)
T ss_pred cCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHh-hcccceehhhHHHHHHHHhhccCCceEE--------EEcchHH
Q ss_pred hHHHHHHHHHHhccCCCCCccccceeeecCCCCCCCccccccccCCCcccCCCCCCeEEEecCCceEEEecCCCChhhhH
Q 003695 251 FACQLLLCQKRVHAMPASPNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSN 330 (802)
Q Consensus 251 F~~QL~e~EkkL~~~~aSp~sv~RLYRVrg~S~~dpr~lVPk~ev~~sasSLNSrDcFILdt~s~IYVWiGk~Ss~~er~ 330 (802)
...-..+|++=+.+ .......++|-+........+....+.- .++++||||-...-=.+=.|++ -
T Consensus 740 ~~NW~~EFekWm~~--~e~~~~leV~eL~~vkr~e~R~~~L~~W-------~~~ggVmIiGYdmyRnLa~gr~------v 804 (1567)
T KOG1015|consen 740 ALNWMNEFEKWMEG--LEDDEKLEVSELATVKRPEERSYMLQRW-------QEDGGVMIIGYDMYRNLAQGRN------V 804 (1567)
T ss_pred HHHHHHHHHHhccc--ccccccceeehhhhccChHHHHHHHHHH-------HhcCCEEEEehHHHHHHhcccc------h
Q ss_pred HHHHHHHHHHHHh-hcCCcEEEecCC
Q 003695 331 RAREAANQVIRYE-KAQGQITSIKEG 355 (802)
Q Consensus 331 ~ar~aA~~I~~~e-~~~~~I~vV~EG 355 (802)
+-+.++..+..+. .+...++|++||
T Consensus 805 k~rk~ke~f~k~lvdpGPD~vVCDE~ 830 (1567)
T KOG1015|consen 805 KSRKLKEIFNKALVDPGPDFVVCDEG 830 (1567)
T ss_pred hhhHHHHHHHHhccCCCCCeEEecch
No 88
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=25.70 E-value=1.6e+02 Score=28.98 Aligned_cols=52 Identities=17% Similarity=0.512 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCcccCC
Q 003695 182 DITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPN 248 (802)
Q Consensus 182 dL~~~L~eav~fIe~a~~~ggrVLVHC~aGvSRSaTVViAYLM~~~g~SledAi~~VRs~RP~I~PN 248 (802)
++....+.+++|+++ ..++-|++-| +-|||.++| ++.+++++...|-.+..|
T Consensus 59 ~L~~l~~~i~~fl~~--~~~~vViiD~-----------lEYL~l~Ng--F~~v~KFL~~LkD~~~~~ 110 (136)
T PF05763_consen 59 NLHKLLDTIVRFLKE--NGNGVVIIDG-----------LEYLILENG--FESVLKFLASLKDYALLN 110 (136)
T ss_pred hhHHHHHHHHHHHHh--CCCcEEEEec-----------HHHHHHHcC--HHHHHHHHHHhHHHeecc
Confidence 343445555556655 3468899998 789999988 888999999888655443
No 89
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=25.25 E-value=97 Score=28.92 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=15.4
Q ss_pred HhcCCeEEEEcCCCCchHHHH
Q 003695 198 REQGGRVFVHCCQGVSRSTSL 218 (802)
Q Consensus 198 ~~~ggrVLVHC~aGvSRSaTV 218 (802)
....++|+|+|..|. ||...
T Consensus 61 ~~~~~~ivv~C~~G~-rs~~a 80 (117)
T cd01522 61 VGKDRPVLLLCRSGN-RSIAA 80 (117)
T ss_pred CCCCCeEEEEcCCCc-cHHHH
Confidence 356789999999985 77654
No 90
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=24.16 E-value=73 Score=29.36 Aligned_cols=37 Identities=27% Similarity=0.513 Sum_probs=25.5
Q ss_pred EEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcC
Q 003695 205 FVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARG 243 (802)
Q Consensus 205 LVHC~aGvSRSaTVViAYLM~~~g~SledAi~~VRs~RP 243 (802)
+.||.+ -+..+- ++.++|..+++++.+|++++.+.--
T Consensus 54 ~~~Cf~-Cg~~Gd-~i~~v~~~~~~~f~eAv~~l~~~~~ 90 (97)
T PF01807_consen 54 RFKCFG-CGKGGD-VIDFVMKYEGCSFKEAVKWLAEEFG 90 (97)
T ss_dssp EEEETT-T--EE--HHHHHHHHHT--HHHHHHHHHHHHT
T ss_pred eEEECC-CCCCCc-HHhHHHHHhCCCHHHHHHHHHHHhC
Confidence 588984 455554 4888899999999999999887543
No 91
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=23.17 E-value=99 Score=30.49 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCC
Q 003695 186 ILYDVFDYFEDVREQGGRVFVHCCQ 210 (802)
Q Consensus 186 ~L~eav~fIe~a~~~ggrVLVHC~a 210 (802)
.+.-++.+++++.++|.+|+|+|..
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d 38 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCED 38 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4566899999999999999999954
No 92
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=22.78 E-value=1e+02 Score=27.37 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=17.9
Q ss_pred cCCeEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003695 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (802)
Q Consensus 200 ~ggrVLVHC~aGvSRSaTVViAYLM~~~g~ 229 (802)
++.+|+|+|..|. ||.. ++.+| ...|.
T Consensus 55 ~~~~iv~~c~~G~-rs~~-aa~~L-~~~G~ 81 (95)
T cd01534 55 RGARIVLADDDGV-RADM-TASWL-AQMGW 81 (95)
T ss_pred CCCeEEEECCCCC-hHHH-HHHHH-HHcCC
Confidence 4679999999987 6643 33444 44455
No 93
>PHA02540 61 DNA primase; Provisional
Probab=21.31 E-value=2.3e+02 Score=32.26 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=30.4
Q ss_pred eEEEEcCC-CCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcC
Q 003695 203 RVFVHCCQ-GVSRSTSLVIAYLMWREGQSFEDAFQYVKAARG 243 (802)
Q Consensus 203 rVLVHC~a-GvSRSaTVViAYLM~~~g~SledAi~~VRs~RP 243 (802)
..+.||.. |.+.. ++.|||.++++++.||++.+.+...
T Consensus 53 ~~~yhCFgCGa~Gd---~i~Flme~e~lsf~Eav~~la~~~g 91 (337)
T PHA02540 53 GGVFKCHNCGYHRP---FGNFLKDYEPDLYREYIMERFKERG 91 (337)
T ss_pred ceEEEecCCCCCCC---HHHHHHHhcCCChHHHHHHHHHHhC
Confidence 67899964 77654 6899999999999999997666543
No 94
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=20.33 E-value=1.2e+02 Score=30.51 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEcC
Q 003695 188 YDVFDYFEDVREQGGRVFVHCC 209 (802)
Q Consensus 188 ~eav~fIe~a~~~ggrVLVHC~ 209 (802)
.-++.+++++...|.+|||+|.
T Consensus 16 ~~~c~L~~k~~~~G~rvlI~~~ 37 (144)
T COG2927 16 AAACRLAEKAWRSGWRVLIQCE 37 (144)
T ss_pred HHHHHHHHHHHHcCCeEEEEeC
Confidence 3689999999999999999994
Done!