Query 003696
Match_columns 802
No_of_seqs 677 out of 3754
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:18:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0734 AAA+-type ATPase conta 100.0 4E-128 9E-133 1058.0 49.7 629 131-792 108-744 (752)
2 COG0465 HflB ATP-dependent Zn 100.0 2E-100 4E-105 872.0 44.0 481 292-784 95-592 (596)
3 KOG0731 AAA+-type ATPase conta 100.0 2.8E-94 6.1E-99 833.0 43.1 435 350-787 303-753 (774)
4 CHL00176 ftsH cell division pr 100.0 5.4E-86 1.2E-90 770.5 52.6 434 350-785 175-628 (638)
5 PRK10733 hflB ATP-dependent me 100.0 8.4E-84 1.8E-88 757.1 51.8 434 350-783 144-596 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 9.7E-81 2.1E-85 712.6 52.8 432 348-781 45-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 6.7E-57 1.4E-61 481.3 24.7 250 350-599 143-397 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 5.2E-55 1.1E-59 533.1 29.0 309 382-714 1621-1984(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 8E-50 1.7E-54 452.0 23.8 248 348-595 424-675 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 9.5E-47 2.1E-51 421.5 24.9 247 351-597 504-772 (802)
11 KOG0727 26S proteasome regulat 100.0 4.8E-44 1E-48 366.6 21.8 280 311-597 115-399 (408)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 5E-44 1.1E-48 399.7 21.4 224 354-577 186-414 (802)
13 KOG0652 26S proteasome regulat 100.0 8.7E-44 1.9E-48 366.1 19.1 248 349-596 162-414 (424)
14 KOG0729 26S proteasome regulat 100.0 6.2E-44 1.3E-48 368.0 17.4 252 349-600 168-424 (435)
15 KOG0728 26S proteasome regulat 100.0 1.6E-43 3.6E-48 362.4 19.8 251 351-601 140-395 (404)
16 COG1223 Predicted ATPase (AAA+ 100.0 2.6E-43 5.7E-48 362.8 20.0 238 352-594 115-355 (368)
17 PF01434 Peptidase_M41: Peptid 100.0 3.5E-43 7.7E-48 362.2 21.1 197 583-779 1-213 (213)
18 KOG0726 26S proteasome regulat 100.0 1.8E-43 3.9E-48 368.2 15.1 248 351-598 178-430 (440)
19 KOG0738 AAA+-type ATPase [Post 100.0 2.3E-42 4.9E-47 371.6 20.5 249 345-596 199-471 (491)
20 KOG0736 Peroxisome assembly fa 100.0 3.8E-42 8.2E-47 392.4 22.9 247 349-596 663-934 (953)
21 PTZ00454 26S protease regulato 100.0 8.7E-41 1.9E-45 372.9 27.1 249 350-598 137-390 (398)
22 PRK03992 proteasome-activating 100.0 1.6E-39 3.5E-44 362.5 26.4 252 350-601 123-379 (389)
23 PTZ00361 26 proteosome regulat 100.0 3.6E-39 7.9E-44 362.8 24.8 248 350-597 175-427 (438)
24 COG0464 SpoVK ATPases of the A 100.0 6.6E-39 1.4E-43 367.2 25.5 247 348-594 232-483 (494)
25 TIGR01243 CDC48 AAA family ATP 100.0 3.1E-38 6.8E-43 377.4 25.9 245 351-595 446-711 (733)
26 KOG0735 AAA+-type ATPase [Post 100.0 2.4E-38 5.3E-43 358.4 22.3 225 353-577 662-888 (952)
27 KOG0739 AAA+-type ATPase [Post 100.0 2.8E-39 6.1E-44 337.8 13.2 231 344-577 119-353 (439)
28 CHL00195 ycf46 Ycf46; Provisio 100.0 3.7E-37 8E-42 351.0 25.2 239 353-596 223-465 (489)
29 KOG0737 AAA+-type ATPase [Post 100.0 1.7E-37 3.7E-42 334.1 21.0 229 347-577 81-314 (386)
30 TIGR01242 26Sp45 26S proteasom 100.0 8.9E-37 1.9E-41 337.3 26.0 245 350-594 114-363 (364)
31 KOG0651 26S proteasome regulat 100.0 1.3E-37 2.9E-42 327.4 13.0 241 354-594 128-373 (388)
32 TIGR03689 pup_AAA proteasome A 100.0 1E-34 2.3E-39 331.1 25.1 263 347-609 171-493 (512)
33 KOG0730 AAA+-type ATPase [Post 100.0 6.4E-33 1.4E-37 315.0 20.0 241 353-600 180-422 (693)
34 PLN00020 ribulose bisphosphate 100.0 6.5E-32 1.4E-36 293.7 22.1 260 353-625 110-394 (413)
35 TIGR01243 CDC48 AAA family ATP 100.0 1.2E-31 2.5E-36 321.0 25.3 245 353-597 173-438 (733)
36 KOG0732 AAA+-type ATPase conta 100.0 1.8E-31 3.8E-36 317.6 18.9 250 351-600 258-531 (1080)
37 KOG0741 AAA+-type ATPase [Post 100.0 1.4E-31 3.1E-36 296.0 15.8 244 353-596 214-492 (744)
38 KOG0740 AAA+-type ATPase [Post 100.0 8E-31 1.7E-35 290.8 16.1 246 346-594 141-404 (428)
39 CHL00181 cbbX CbbX; Provisiona 99.9 3.3E-21 7.3E-26 207.5 20.8 223 357-587 22-271 (287)
40 KOG0743 AAA+-type ATPase [Post 99.9 1.5E-21 3.3E-26 216.0 18.5 207 351-567 194-413 (457)
41 TIGR02881 spore_V_K stage V sp 99.9 5.1E-21 1.1E-25 202.8 21.8 213 356-577 4-241 (261)
42 KOG0742 AAA+-type ATPase [Post 99.9 6.8E-21 1.5E-25 206.8 19.8 213 355-578 352-594 (630)
43 PF00004 AAA: ATPase family as 99.9 2.3E-21 4.9E-26 181.0 12.9 129 394-523 1-132 (132)
44 TIGR02880 cbbX_cfxQ probable R 99.9 1.2E-20 2.6E-25 202.8 18.8 213 357-577 20-256 (284)
45 TIGR02902 spore_lonB ATP-depen 99.8 3.3E-20 7.1E-25 215.1 17.0 265 298-592 5-330 (531)
46 TIGR00635 ruvB Holliday juncti 99.8 6.6E-19 1.4E-23 189.6 20.9 211 355-593 1-228 (305)
47 PRK00080 ruvB Holliday junctio 99.8 7.2E-19 1.6E-23 192.3 21.3 216 351-594 18-250 (328)
48 PF05496 RuvB_N: Holliday junc 99.8 6.2E-19 1.3E-23 182.0 18.4 191 352-570 18-225 (233)
49 KOG0736 Peroxisome assembly fa 99.8 5.8E-18 1.3E-22 195.3 18.8 232 357-594 400-653 (953)
50 COG0464 SpoVK ATPases of the A 99.8 1.4E-17 2.9E-22 191.6 21.2 218 377-596 4-228 (494)
51 PRK14956 DNA polymerase III su 99.8 1.3E-17 2.9E-22 189.2 20.4 205 350-591 10-243 (484)
52 COG2256 MGS1 ATPase related to 99.8 2.2E-17 4.8E-22 180.7 21.2 203 353-595 19-239 (436)
53 PRK12323 DNA polymerase III su 99.8 9.7E-18 2.1E-22 194.7 18.3 202 351-589 9-244 (700)
54 TIGR02639 ClpA ATP-dependent C 99.8 1.3E-17 2.8E-22 200.3 19.2 223 353-595 177-430 (731)
55 KOG0744 AAA+-type ATPase [Post 99.8 6.4E-18 1.4E-22 180.0 14.3 233 356-592 140-412 (423)
56 COG2255 RuvB Holliday junction 99.8 3E-17 6.5E-22 172.9 19.1 214 353-594 21-251 (332)
57 PRK07003 DNA polymerase III su 99.8 3.2E-17 7E-22 192.4 20.5 201 351-588 9-238 (830)
58 PRK14962 DNA polymerase III su 99.7 6E-17 1.3E-21 185.2 21.3 205 351-592 7-240 (472)
59 PRK14961 DNA polymerase III su 99.7 7.1E-17 1.5E-21 179.2 20.9 211 350-591 8-241 (363)
60 PRK00149 dnaA chromosomal repl 99.7 2.5E-17 5.4E-22 187.6 17.5 299 353-687 117-427 (450)
61 PRK14960 DNA polymerase III su 99.7 5.8E-17 1.3E-21 188.6 20.2 203 351-590 8-239 (702)
62 PRK06645 DNA polymerase III su 99.7 1E-16 2.2E-21 184.4 21.2 216 348-591 11-253 (507)
63 KOG0735 AAA+-type ATPase [Post 99.7 7.4E-17 1.6E-21 184.9 19.7 236 389-625 429-682 (952)
64 PRK07994 DNA polymerase III su 99.7 1.1E-16 2.3E-21 188.1 21.4 203 351-590 9-240 (647)
65 PRK14958 DNA polymerase III su 99.7 6.1E-17 1.3E-21 186.8 18.6 204 350-590 8-240 (509)
66 PRK13342 recombination factor 99.7 3.6E-16 7.8E-21 176.4 23.8 202 352-595 6-220 (413)
67 PRK14949 DNA polymerase III su 99.7 1.8E-16 3.9E-21 189.1 21.7 208 351-589 9-239 (944)
68 TIGR00362 DnaA chromosomal rep 99.7 3.1E-16 6.7E-21 176.3 22.1 222 353-596 105-339 (405)
69 PRK14964 DNA polymerase III su 99.7 1.7E-16 3.6E-21 181.6 20.1 203 351-590 6-237 (491)
70 PRK04195 replication factor C 99.7 2.4E-16 5.1E-21 181.2 20.9 211 348-591 4-222 (482)
71 PRK11034 clpA ATP-dependent Cl 99.7 1.1E-16 2.4E-21 191.7 18.5 221 355-595 183-434 (758)
72 TIGR00763 lon ATP-dependent pr 99.7 1E-16 2.2E-21 193.6 18.3 198 359-572 321-552 (775)
73 PRK14088 dnaA chromosomal repl 99.7 3.5E-16 7.5E-21 177.9 21.5 226 351-597 98-335 (440)
74 PRK08691 DNA polymerase III su 99.7 2.1E-16 4.6E-21 185.3 19.4 210 351-591 9-241 (709)
75 PLN03025 replication factor C 99.7 4E-16 8.7E-21 170.2 19.7 203 348-589 3-218 (319)
76 PRK05563 DNA polymerase III su 99.7 7.6E-16 1.7E-20 179.7 21.6 203 351-590 9-240 (559)
77 PRK14963 DNA polymerase III su 99.7 6.8E-16 1.5E-20 177.9 20.7 203 351-591 7-237 (504)
78 PRK14951 DNA polymerase III su 99.7 5.8E-16 1.3E-20 181.4 20.2 203 351-590 9-245 (618)
79 TIGR02397 dnaX_nterm DNA polym 99.7 8.7E-16 1.9E-20 168.3 20.1 207 349-592 5-240 (355)
80 PRK12402 replication factor C 99.7 1.6E-15 3.4E-20 164.8 21.8 212 348-592 5-247 (337)
81 PRK14969 DNA polymerase III su 99.7 6.2E-16 1.3E-20 179.4 18.1 210 351-591 9-241 (527)
82 TIGR02928 orc1/cdc6 family rep 99.7 3.3E-15 7.2E-20 164.5 22.6 220 357-594 14-274 (365)
83 PRK12422 chromosomal replicati 99.7 1.4E-15 2.9E-20 173.2 19.6 270 392-689 142-423 (445)
84 PRK14959 DNA polymerase III su 99.7 1.3E-15 2.8E-20 177.8 19.7 205 350-591 8-241 (624)
85 PRK14957 DNA polymerase III su 99.7 1.9E-15 4.1E-20 175.1 20.7 203 351-590 9-240 (546)
86 PRK14952 DNA polymerase III su 99.7 1.7E-15 3.8E-20 176.8 20.5 204 351-590 6-240 (584)
87 PRK07764 DNA polymerase III su 99.7 1.9E-15 4.2E-20 182.3 20.9 203 351-589 8-241 (824)
88 PRK14086 dnaA chromosomal repl 99.7 3.9E-15 8.5E-20 173.2 22.2 225 353-597 283-518 (617)
89 TIGR03345 VI_ClpV1 type VI sec 99.7 2.5E-15 5.5E-20 182.7 21.5 218 353-591 182-428 (852)
90 TIGR03420 DnaA_homol_Hda DnaA 99.7 4.8E-15 1E-19 152.3 20.3 203 355-591 12-225 (226)
91 KOG0989 Replication factor C, 99.7 1.9E-15 4.2E-20 160.7 17.6 200 348-583 26-242 (346)
92 PHA02544 44 clamp loader, smal 99.7 2.6E-15 5.5E-20 162.6 19.0 207 347-588 10-225 (316)
93 PRK14965 DNA polymerase III su 99.7 2.2E-15 4.7E-20 176.6 19.3 203 351-590 9-240 (576)
94 PRK14087 dnaA chromosomal repl 99.7 1.7E-15 3.6E-20 172.7 17.6 302 354-690 111-429 (450)
95 PRK13341 recombination factor 99.6 4.9E-15 1.1E-19 176.9 21.3 213 348-594 18-247 (725)
96 PRK08903 DnaA regulatory inact 99.6 9.5E-15 2.1E-19 151.2 20.6 203 351-592 11-224 (227)
97 PRK00411 cdc6 cell division co 99.6 1.9E-14 4.1E-19 160.3 23.2 222 356-594 28-282 (394)
98 PRK06893 DNA replication initi 99.6 9.4E-15 2E-19 152.5 19.2 209 353-591 11-227 (229)
99 PRK14970 DNA polymerase III su 99.6 1.1E-14 2.4E-19 161.4 20.7 211 351-592 10-231 (367)
100 PRK05896 DNA polymerase III su 99.6 5.9E-15 1.3E-19 171.6 19.0 204 350-590 8-240 (605)
101 PRK07133 DNA polymerase III su 99.6 9.5E-15 2.1E-19 172.8 20.0 211 350-591 10-240 (725)
102 PRK06305 DNA polymerase III su 99.6 1.5E-14 3.3E-19 165.0 21.0 204 351-591 10-243 (451)
103 PRK07940 DNA polymerase III su 99.6 7.6E-15 1.6E-19 164.6 17.9 189 356-565 3-213 (394)
104 PRK09111 DNA polymerase III su 99.6 1.7E-14 3.6E-19 169.3 21.4 213 348-591 14-254 (598)
105 PRK08451 DNA polymerase III su 99.6 1.6E-14 3.4E-19 166.9 20.8 203 351-590 7-238 (535)
106 PRK14953 DNA polymerase III su 99.6 1.2E-14 2.6E-19 167.1 19.6 211 350-591 8-241 (486)
107 PRK06647 DNA polymerase III su 99.6 1.5E-14 3.2E-19 168.8 20.2 209 351-591 9-241 (563)
108 PRK10865 protein disaggregatio 99.6 9.1E-15 2E-19 178.2 19.0 201 353-574 173-401 (857)
109 PRK08084 DNA replication initi 99.6 4E-14 8.6E-19 148.4 20.5 204 354-591 18-233 (235)
110 COG2812 DnaX DNA polymerase II 99.6 7E-15 1.5E-19 168.3 15.9 207 351-588 9-238 (515)
111 PRK14955 DNA polymerase III su 99.6 1.5E-14 3.2E-19 162.6 17.7 213 351-591 9-254 (397)
112 TIGR03346 chaperone_ClpB ATP-d 99.6 2.1E-14 4.5E-19 175.3 19.7 204 353-577 168-399 (852)
113 KOG2028 ATPase related to the 99.6 1.3E-14 2.9E-19 156.7 15.6 209 351-593 131-367 (554)
114 PRK08727 hypothetical protein; 99.6 9.2E-14 2E-18 145.5 21.2 179 392-592 42-229 (233)
115 PRK14948 DNA polymerase III su 99.6 4.8E-14 1E-18 166.2 20.7 210 348-589 6-240 (620)
116 PRK14950 DNA polymerase III su 99.6 4.8E-14 1E-18 165.7 20.3 209 351-590 9-241 (585)
117 PRK00440 rfc replication facto 99.6 8.7E-14 1.9E-18 149.9 20.3 207 347-592 6-224 (319)
118 CHL00095 clpC Clp protease ATP 99.6 2.7E-14 5.9E-19 173.7 17.6 202 355-577 176-404 (821)
119 PRK14954 DNA polymerase III su 99.6 8E-14 1.7E-18 163.9 20.7 214 351-591 9-254 (620)
120 PTZ00112 origin recognition co 99.6 1.5E-13 3.3E-18 162.3 20.9 216 358-596 755-1008(1164)
121 PRK05342 clpX ATP-dependent pr 99.6 1.5E-13 3.3E-18 154.9 19.9 218 355-574 67-378 (412)
122 TIGR02903 spore_lon_C ATP-depe 99.6 2.3E-13 4.9E-18 160.8 22.2 217 350-593 146-429 (615)
123 PRK05642 DNA replication initi 99.6 3.1E-13 6.7E-18 141.7 20.9 179 391-591 45-232 (234)
124 COG0593 DnaA ATPase involved i 99.5 4E-13 8.7E-18 150.2 21.9 228 351-599 80-318 (408)
125 TIGR00390 hslU ATP-dependent p 99.5 1.8E-13 3.9E-18 153.0 18.9 172 360-533 14-342 (441)
126 PF00308 Bac_DnaA: Bacterial d 99.5 1.7E-13 3.6E-18 142.5 16.6 199 353-574 3-216 (219)
127 PRK06620 hypothetical protein; 99.5 2.3E-13 4.9E-18 141.1 17.5 198 351-591 9-213 (214)
128 PRK13407 bchI magnesium chelat 99.5 1.2E-13 2.7E-18 151.8 15.7 219 353-596 3-308 (334)
129 PRK05201 hslU ATP-dependent pr 99.5 4.3E-13 9.3E-18 150.1 19.0 173 360-534 17-345 (443)
130 PRK10787 DNA-binding ATP-depen 99.5 3.5E-13 7.7E-18 162.7 19.2 218 357-591 320-579 (784)
131 TIGR02640 gas_vesic_GvpN gas v 99.5 6.8E-13 1.5E-17 141.2 19.0 186 392-597 22-260 (262)
132 COG0466 Lon ATP-dependent Lon 99.5 2.3E-13 5E-18 157.8 16.1 163 359-537 324-508 (782)
133 CHL00081 chlI Mg-protoporyphyr 99.5 2.7E-13 5.9E-18 149.6 15.9 223 353-599 12-327 (350)
134 PRK14971 DNA polymerase III su 99.5 7E-13 1.5E-17 156.4 20.0 203 351-590 10-242 (614)
135 TIGR00382 clpX endopeptidase C 99.5 9.1E-13 2E-17 148.4 18.3 218 356-575 74-385 (413)
136 COG1474 CDC6 Cdc6-related prot 99.5 3.2E-12 7E-17 142.3 20.8 215 360-594 19-265 (366)
137 KOG2004 Mitochondrial ATP-depe 99.5 1.1E-12 2.4E-17 151.4 16.6 166 358-538 411-597 (906)
138 TIGR02030 BchI-ChlI magnesium 99.4 1.5E-12 3.3E-17 143.4 16.9 216 356-598 2-313 (337)
139 PRK09112 DNA polymerase III su 99.4 4.4E-12 9.6E-17 140.6 19.0 189 353-569 18-243 (351)
140 TIGR02639 ClpA ATP-dependent C 99.4 3.7E-12 8.1E-17 153.5 19.3 197 358-570 454-707 (731)
141 PRK11034 clpA ATP-dependent Cl 99.4 1.6E-12 3.5E-17 156.2 15.9 166 359-539 459-668 (758)
142 TIGR02442 Cob-chelat-sub cobal 99.4 2.6E-12 5.6E-17 152.4 17.1 215 356-597 2-307 (633)
143 PRK07471 DNA polymerase III su 99.4 5.1E-12 1.1E-16 140.8 18.2 185 353-567 14-239 (365)
144 cd00009 AAA The AAA+ (ATPases 99.4 5E-12 1.1E-16 117.5 15.0 120 391-522 19-150 (151)
145 PF05673 DUF815: Protein of un 99.4 1.3E-11 2.9E-16 129.4 19.0 192 351-568 20-243 (249)
146 PRK09087 hypothetical protein; 99.4 4.9E-12 1.1E-16 132.2 15.2 171 393-594 46-222 (226)
147 COG1224 TIP49 DNA helicase TIP 99.4 2.5E-11 5.4E-16 131.6 20.6 97 494-593 322-431 (450)
148 PRK05564 DNA polymerase III su 99.4 1.2E-11 2.5E-16 134.8 16.9 169 356-557 2-182 (313)
149 KOG0991 Replication factor C, 99.4 7E-12 1.5E-16 129.4 13.2 213 344-592 13-235 (333)
150 KOG1969 DNA replication checkp 99.3 2.4E-11 5.2E-16 140.9 18.2 215 346-579 259-520 (877)
151 COG3829 RocR Transcriptional r 99.3 3.6E-12 7.8E-17 144.8 10.9 210 354-592 241-496 (560)
152 PRK15424 propionate catabolism 99.3 1.1E-11 2.5E-16 143.9 14.4 208 355-588 216-479 (538)
153 PF05621 TniB: Bacterial TniB 99.3 3E-11 6.5E-16 130.2 16.3 213 360-589 36-284 (302)
154 PRK07399 DNA polymerase III su 99.3 2.6E-11 5.5E-16 132.7 15.9 183 356-568 2-223 (314)
155 TIGR00678 holB DNA polymerase 99.3 8.1E-11 1.8E-15 118.7 16.3 145 388-557 11-183 (188)
156 COG2204 AtoC Response regulato 99.3 1.4E-11 3E-16 139.8 11.8 205 355-588 138-385 (464)
157 COG0714 MoxR-like ATPases [Gen 99.3 1.2E-10 2.6E-15 127.8 18.7 134 392-537 44-203 (329)
158 TIGR03345 VI_ClpV1 type VI sec 99.3 7.9E-11 1.7E-15 143.8 19.0 193 358-569 566-825 (852)
159 COG0470 HolB ATPase involved i 99.3 7.7E-11 1.7E-15 127.1 16.8 178 358-576 1-206 (325)
160 TIGR00368 Mg chelatase-related 99.3 7.2E-11 1.6E-15 136.3 17.4 208 355-592 189-497 (499)
161 PRK13531 regulatory ATPase Rav 99.3 1.6E-10 3.5E-15 131.7 20.0 213 360-599 22-288 (498)
162 COG0542 clpA ATP-binding subun 99.3 8.4E-11 1.8E-15 139.8 18.3 205 353-577 165-396 (786)
163 PRK10865 protein disaggregatio 99.3 1E-10 2.2E-15 143.1 18.5 167 357-539 567-781 (857)
164 TIGR02329 propionate_PrpR prop 99.3 3.7E-11 8E-16 139.6 13.7 209 355-589 209-465 (526)
165 TIGR00764 lon_rel lon-related 99.2 1.5E-10 3.2E-15 136.9 18.3 101 492-594 268-391 (608)
166 PHA02244 ATPase-like protein 99.2 2.5E-10 5.5E-15 126.3 18.8 119 392-526 120-263 (383)
167 TIGR03346 chaperone_ClpB ATP-d 99.2 1.7E-10 3.6E-15 141.4 19.1 200 357-571 564-822 (852)
168 TIGR01650 PD_CobS cobaltochela 99.2 3E-11 6.5E-16 132.1 11.0 138 391-538 64-234 (327)
169 smart00350 MCM minichromosome 99.2 1.7E-10 3.6E-15 134.0 17.3 219 359-594 204-504 (509)
170 smart00382 AAA ATPases associa 99.2 9.7E-11 2.1E-15 107.4 12.2 125 391-524 2-147 (148)
171 TIGR01817 nifA Nif-specific re 99.2 4.4E-11 9.6E-16 139.4 11.8 206 354-588 192-439 (534)
172 TIGR03015 pepcterm_ATPase puta 99.2 1.9E-09 4E-14 113.9 22.6 188 393-594 45-266 (269)
173 CHL00095 clpC Clp protease ATP 99.2 1.8E-10 3.8E-15 140.7 15.8 131 358-502 509-662 (821)
174 PRK08058 DNA polymerase III su 99.2 1.6E-10 3.4E-15 127.2 13.8 149 356-535 3-180 (329)
175 PRK05022 anaerobic nitric oxid 99.2 1.6E-10 3.4E-15 134.2 14.2 194 356-575 185-421 (509)
176 COG3604 FhlA Transcriptional r 99.2 1.1E-10 2.5E-15 131.3 12.4 198 354-574 219-456 (550)
177 PRK05707 DNA polymerase III su 99.2 3.8E-10 8.2E-15 124.2 16.3 149 388-557 19-195 (328)
178 PRK11388 DNA-binding transcrip 99.2 3.5E-10 7.5E-15 134.6 16.5 208 355-591 322-568 (638)
179 TIGR00602 rad24 checkpoint pro 99.2 4.6E-10 1E-14 132.5 17.2 259 346-626 72-390 (637)
180 PF01078 Mg_chelatase: Magnesi 99.2 4E-11 8.6E-16 123.3 7.2 119 356-501 1-158 (206)
181 TIGR02974 phageshock_pspF psp 99.2 3.2E-10 6.9E-15 124.9 14.9 198 360-586 1-242 (329)
182 PRK11608 pspF phage shock prot 99.2 3.3E-10 7E-15 124.6 14.5 192 356-573 4-239 (326)
183 TIGR02031 BchD-ChlD magnesium 99.2 6.8E-10 1.5E-14 130.9 17.7 191 392-597 17-261 (589)
184 PRK04132 replication factor C 99.1 7.1E-10 1.5E-14 134.1 17.8 170 394-590 567-750 (846)
185 PRK10820 DNA-binding transcrip 99.1 5.2E-10 1.1E-14 130.2 16.1 205 354-587 200-447 (520)
186 COG0542 clpA ATP-binding subun 99.1 2.4E-10 5.2E-15 136.0 13.1 160 358-538 491-706 (786)
187 COG2607 Predicted ATPase (AAA+ 99.1 3.4E-09 7.4E-14 110.4 19.1 194 350-569 52-276 (287)
188 COG1221 PspF Transcriptional r 99.1 1.4E-10 3E-15 129.7 9.5 197 354-575 74-310 (403)
189 KOG1942 DNA helicase, TBP-inte 99.1 2.4E-09 5.2E-14 113.8 18.0 128 451-594 297-438 (456)
190 PRK11331 5-methylcytosine-spec 99.1 6E-10 1.3E-14 126.2 14.4 141 357-523 174-357 (459)
191 PF07728 AAA_5: AAA domain (dy 99.1 1.4E-10 3E-15 110.8 7.2 110 393-515 1-139 (139)
192 PRK15429 formate hydrogenlyase 99.1 1.1E-09 2.4E-14 131.5 16.4 194 355-574 373-609 (686)
193 PRK09862 putative ATP-dependen 99.1 2.4E-09 5.2E-14 123.7 17.0 209 355-592 188-490 (506)
194 PF13177 DNA_pol3_delta2: DNA 99.1 1.1E-09 2.3E-14 108.9 12.1 133 362-523 1-160 (162)
195 COG1219 ClpX ATP-dependent pro 99.1 4.8E-10 1E-14 120.4 9.7 123 360-487 63-203 (408)
196 PF06068 TIP49: TIP49 C-termin 99.1 2.3E-09 5E-14 118.1 15.3 65 356-427 22-88 (398)
197 KOG0990 Replication factor C, 99.0 1.9E-09 4.1E-14 116.1 13.8 198 344-575 27-238 (360)
198 COG1220 HslU ATP-dependent pro 99.0 2.7E-09 5.8E-14 115.5 13.8 81 452-534 252-346 (444)
199 PF00158 Sigma54_activat: Sigm 99.0 6.4E-10 1.4E-14 111.4 8.2 131 360-516 1-155 (168)
200 COG0606 Predicted ATPase with 99.0 6.1E-10 1.3E-14 125.5 8.5 210 354-592 175-483 (490)
201 PRK06871 DNA polymerase III su 99.0 9.1E-09 2E-13 113.2 17.4 135 387-536 20-178 (325)
202 PRK08116 hypothetical protein; 99.0 2.7E-09 5.8E-14 114.4 11.9 155 355-526 82-251 (268)
203 PRK06964 DNA polymerase III su 99.0 3.9E-09 8.5E-14 116.8 13.1 135 387-536 17-203 (342)
204 PRK08769 DNA polymerase III su 99.0 1.3E-08 2.8E-13 111.8 16.7 134 387-535 22-183 (319)
205 PRK07993 DNA polymerase III su 99.0 1.3E-08 2.9E-13 112.3 16.2 152 387-557 20-196 (334)
206 COG1239 ChlI Mg-chelatase subu 98.9 1.3E-08 2.8E-13 113.6 14.7 160 355-539 14-234 (423)
207 smart00763 AAA_PrkA PrkA AAA d 98.9 1.9E-08 4.2E-13 111.4 15.3 85 356-446 48-144 (361)
208 KOG0741 AAA+-type ATPase [Post 98.9 2E-08 4.3E-13 113.6 15.3 155 373-535 526-684 (744)
209 TIGR02915 PEP_resp_reg putativ 98.9 8.4E-09 1.8E-13 117.1 12.6 203 356-587 137-382 (445)
210 PRK06090 DNA polymerase III su 98.9 3E-08 6.5E-13 108.9 15.3 131 387-535 21-178 (319)
211 PTZ00111 DNA replication licen 98.9 4E-08 8.8E-13 118.9 17.5 130 391-535 492-655 (915)
212 PF07724 AAA_2: AAA domain (Cd 98.8 6.2E-09 1.3E-13 104.6 8.1 108 392-503 4-131 (171)
213 KOG1514 Origin recognition com 98.8 6.8E-08 1.5E-12 112.7 17.1 196 393-597 424-658 (767)
214 PRK10923 glnG nitrogen regulat 98.8 3.5E-08 7.5E-13 112.9 14.4 203 356-590 136-384 (469)
215 PRK13765 ATP-dependent proteas 98.8 2.5E-08 5.3E-13 118.3 13.3 100 492-593 277-399 (637)
216 KOG2035 Replication factor C, 98.8 7.4E-08 1.6E-12 102.2 15.4 179 348-557 3-220 (351)
217 PRK11361 acetoacetate metaboli 98.8 5.3E-08 1.2E-12 110.7 15.4 205 356-589 141-388 (457)
218 PRK12377 putative replication 98.8 4.6E-08 9.9E-13 103.9 11.9 69 392-462 102-175 (248)
219 KOG0745 Putative ATP-dependent 98.8 3.2E-08 6.9E-13 110.0 10.5 95 393-487 228-332 (564)
220 PRK15115 response regulator Gl 98.7 1.6E-07 3.4E-12 106.8 15.4 200 359-590 135-380 (444)
221 PF07726 AAA_3: ATPase family 98.7 9.1E-09 2E-13 98.6 4.1 109 393-515 1-129 (131)
222 TIGR01818 ntrC nitrogen regula 98.7 9.8E-08 2.1E-12 108.9 12.5 203 357-591 133-381 (463)
223 PF14532 Sigma54_activ_2: Sigm 98.7 3.8E-08 8.1E-13 94.8 7.7 105 361-500 1-108 (138)
224 PRK08699 DNA polymerase III su 98.7 9.6E-08 2.1E-12 105.3 11.8 133 388-535 18-183 (325)
225 PRK08939 primosomal protein Dn 98.7 8.3E-08 1.8E-12 104.9 10.7 101 355-462 124-229 (306)
226 PRK07952 DNA replication prote 98.7 1E-07 2.2E-12 101.1 10.7 131 354-502 68-205 (244)
227 PRK13406 bchD magnesium chelat 98.7 1.6E-07 3.6E-12 110.5 13.2 190 392-597 26-253 (584)
228 PRK08181 transposase; Validate 98.7 1.4E-07 3.1E-12 101.3 11.5 71 392-464 107-181 (269)
229 KOG2680 DNA helicase TIP49, TB 98.6 1.1E-06 2.5E-11 94.1 17.7 92 502-596 339-431 (454)
230 PRK10365 transcriptional regul 98.6 1.6E-07 3.4E-12 106.4 11.4 200 359-590 140-385 (441)
231 PF03215 Rad17: Rad17 cell cyc 98.6 9.1E-07 2E-11 103.1 16.9 210 346-575 7-269 (519)
232 PF01637 Arch_ATPase: Archaeal 98.6 5.8E-07 1.3E-11 91.4 13.1 164 391-563 20-231 (234)
233 PRK06835 DNA replication prote 98.6 2.1E-07 4.5E-12 102.8 10.5 99 392-501 184-288 (329)
234 PF13173 AAA_14: AAA domain 98.6 4E-07 8.7E-12 86.5 11.0 69 392-462 3-73 (128)
235 PRK06526 transposase; Provisio 98.5 1.6E-07 3.4E-12 100.2 8.1 100 391-502 98-201 (254)
236 KOG2227 Pre-initiation complex 98.5 1.7E-06 3.7E-11 97.5 16.5 202 359-578 151-383 (529)
237 COG3283 TyrR Transcriptional r 98.5 5.8E-07 1.3E-11 98.3 10.9 210 353-588 199-443 (511)
238 PRK09183 transposase/IS protei 98.5 5E-07 1.1E-11 96.6 9.7 72 391-463 102-177 (259)
239 COG1484 DnaC DNA replication p 98.5 8.4E-07 1.8E-11 94.7 11.3 71 390-462 104-179 (254)
240 KOG1051 Chaperone HSP104 and r 98.5 9E-07 2E-11 107.3 12.6 128 358-501 562-710 (898)
241 PRK05917 DNA polymerase III su 98.5 2.1E-06 4.5E-11 93.2 14.0 123 387-524 15-154 (290)
242 PF13401 AAA_22: AAA domain; P 98.4 8.8E-07 1.9E-11 83.1 9.4 98 392-500 5-126 (131)
243 PRK06921 hypothetical protein; 98.4 1.4E-06 3E-11 93.6 11.5 68 391-461 117-188 (266)
244 PRK07276 DNA polymerase III su 98.4 7.6E-06 1.6E-10 89.0 16.3 143 363-534 7-172 (290)
245 PF01695 IstB_IS21: IstB-like 98.4 3.6E-07 7.8E-12 92.4 5.4 70 391-462 47-120 (178)
246 COG3284 AcoR Transcriptional a 98.4 4.2E-07 9.1E-12 105.7 6.2 180 393-592 338-555 (606)
247 cd01120 RecA-like_NTPases RecA 98.3 1.7E-06 3.6E-11 82.9 8.7 72 394-465 2-100 (165)
248 PF00493 MCM: MCM2/3/5 family 98.3 2.1E-07 4.5E-12 102.8 1.9 211 359-593 25-325 (331)
249 PF12775 AAA_7: P-loop contain 98.3 4.7E-06 1E-10 89.9 12.0 133 392-538 34-194 (272)
250 KOG1970 Checkpoint RAD17-RFC c 98.3 1.6E-05 3.4E-10 91.3 16.0 212 345-574 69-320 (634)
251 COG1241 MCM2 Predicted ATPase 98.3 4.3E-06 9.4E-11 99.4 11.2 220 357-594 285-592 (682)
252 PF05729 NACHT: NACHT domain 98.2 1E-05 2.3E-10 78.0 11.7 141 393-539 2-165 (166)
253 PLN03210 Resistant to P. syrin 98.2 1.1E-05 2.5E-10 102.5 14.9 176 355-560 181-390 (1153)
254 PRK07132 DNA polymerase III su 98.2 5.1E-05 1.1E-09 83.0 17.8 129 387-535 14-160 (299)
255 COG3267 ExeA Type II secretory 98.1 7.8E-05 1.7E-09 79.1 16.5 184 393-588 53-267 (269)
256 KOG0480 DNA replication licens 98.1 2E-05 4.3E-10 91.6 12.9 221 356-593 343-642 (764)
257 PF00931 NB-ARC: NB-ARC domain 98.1 3.4E-05 7.4E-10 82.1 13.7 172 369-566 4-202 (287)
258 TIGR02237 recomb_radB DNA repa 98.1 2.1E-05 4.5E-10 80.5 10.6 112 389-500 10-148 (209)
259 PRK05818 DNA polymerase III su 98.1 2.8E-05 6.1E-10 83.1 11.8 121 389-524 5-147 (261)
260 KOG0478 DNA replication licens 98.0 6.6E-05 1.4E-09 88.0 15.0 127 392-533 463-622 (804)
261 PF03969 AFG1_ATPase: AFG1-lik 98.0 2.8E-05 6.2E-10 87.1 11.4 140 388-551 59-207 (362)
262 PF12774 AAA_6: Hydrolytic ATP 98.0 6.7E-05 1.4E-09 79.2 12.5 125 392-533 33-176 (231)
263 cd01124 KaiC KaiC is a circadi 98.0 6.8E-05 1.5E-09 74.7 11.4 71 394-464 2-109 (187)
264 PRK11823 DNA repair protein Ra 97.9 6.3E-05 1.4E-09 86.6 11.0 76 389-464 78-170 (446)
265 PF13191 AAA_16: AAA ATPase do 97.9 2.1E-05 4.6E-10 77.7 6.2 59 360-427 2-63 (185)
266 cd01121 Sms Sms (bacterial rad 97.8 8.1E-05 1.8E-09 83.7 10.5 76 389-464 80-172 (372)
267 TIGR02688 conserved hypothetic 97.8 0.0002 4.3E-09 81.3 13.1 92 392-501 210-314 (449)
268 KOG2383 Predicted ATPase [Gene 97.8 0.00017 3.7E-09 80.5 12.1 157 388-571 111-297 (467)
269 KOG1968 Replication factor C, 97.8 3.7E-05 8E-10 94.1 7.5 206 350-573 312-535 (871)
270 COG1618 Predicted nucleotide k 97.8 0.00016 3.5E-09 72.1 10.6 27 389-415 3-29 (179)
271 PF00910 RNA_helicase: RNA hel 97.8 7.1E-05 1.5E-09 69.3 7.2 23 394-416 1-23 (107)
272 PHA00729 NTP-binding motif con 97.8 5.7E-05 1.2E-09 79.4 7.3 24 393-416 19-42 (226)
273 cd01394 radB RadB. The archaea 97.7 0.00023 5.1E-09 73.3 11.4 35 391-425 19-56 (218)
274 PRK08118 topology modulation p 97.7 0.00013 2.7E-09 73.2 8.7 101 393-539 3-103 (167)
275 PRK09361 radB DNA repair and r 97.7 0.00018 3.8E-09 74.7 9.9 112 388-500 20-160 (225)
276 TIGR01618 phage_P_loop phage n 97.7 0.00011 2.5E-09 76.9 8.5 74 389-464 10-95 (220)
277 PRK06067 flagellar accessory p 97.7 0.0004 8.7E-09 72.6 12.0 40 387-426 21-63 (234)
278 KOG0482 DNA replication licens 97.6 0.00019 4.2E-09 81.7 9.8 221 359-594 343-638 (721)
279 TIGR02012 tigrfam_recA protein 97.6 0.00029 6.2E-09 77.8 11.0 109 392-500 56-190 (321)
280 COG1373 Predicted ATPase (AAA+ 97.6 0.00069 1.5E-08 77.0 14.1 135 393-543 39-186 (398)
281 PRK08533 flagellar accessory p 97.6 0.00058 1.3E-08 71.9 12.2 75 389-463 22-130 (230)
282 PF07693 KAP_NTPase: KAP famil 97.6 0.0021 4.6E-08 69.8 16.9 79 450-539 172-265 (325)
283 KOG1051 Chaperone HSP104 and r 97.6 0.00046 1E-08 84.4 12.2 163 356-539 184-365 (898)
284 cd00046 DEXDc DEAD-like helica 97.6 0.00059 1.3E-08 62.5 10.3 24 392-415 1-24 (144)
285 PRK00131 aroK shikimate kinase 97.6 0.00024 5.2E-09 69.7 8.0 33 390-422 3-35 (175)
286 COG1485 Predicted ATPase [Gene 97.5 0.00045 9.8E-09 76.3 10.8 164 362-549 29-208 (367)
287 PF05707 Zot: Zonular occluden 97.5 9.7E-05 2.1E-09 75.4 5.3 124 394-525 3-147 (193)
288 PF13207 AAA_17: AAA domain; P 97.5 7.1E-05 1.5E-09 69.5 3.9 30 394-423 2-31 (121)
289 PRK14722 flhF flagellar biosyn 97.5 0.00033 7.1E-09 78.8 9.4 110 390-510 136-267 (374)
290 TIGR00416 sms DNA repair prote 97.5 0.00063 1.4E-08 78.6 11.1 75 390-464 93-184 (454)
291 PTZ00202 tuzin; Provisional 97.4 0.0051 1.1E-07 70.4 17.5 205 357-595 261-483 (550)
292 PRK12723 flagellar biosynthesi 97.4 0.001 2.3E-08 75.3 12.2 132 389-531 172-329 (388)
293 TIGR02858 spore_III_AA stage I 97.4 0.00029 6.4E-09 76.0 7.4 113 392-522 112-256 (270)
294 cd00983 recA RecA is a bacter 97.4 0.0007 1.5E-08 74.9 10.5 109 392-500 56-190 (325)
295 PRK00771 signal recognition pa 97.4 0.0029 6.3E-08 72.8 15.7 167 389-571 93-300 (437)
296 PRK15455 PrkA family serine pr 97.4 0.00023 5.1E-09 83.3 6.7 63 356-424 74-137 (644)
297 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00059 1.3E-08 70.9 9.0 114 387-500 15-168 (235)
298 PRK07261 topology modulation p 97.4 0.00035 7.6E-09 70.1 6.7 32 393-424 2-33 (171)
299 PRK04296 thymidine kinase; Pro 97.4 0.00067 1.5E-08 69.2 8.9 70 393-462 4-90 (190)
300 cd01393 recA_like RecA is a b 97.4 0.00072 1.6E-08 69.8 9.1 114 387-500 15-167 (226)
301 cd03283 ABC_MutS-like MutS-lik 97.3 0.00076 1.7E-08 69.5 9.0 104 392-505 26-151 (199)
302 COG1116 TauB ABC-type nitrate/ 97.3 0.00038 8.2E-09 73.8 6.7 21 393-413 31-51 (248)
303 COG5271 MDN1 AAA ATPase contai 97.3 0.00064 1.4E-08 85.4 9.5 135 390-539 1542-1705(4600)
304 COG4650 RtcR Sigma54-dependent 97.3 0.00089 1.9E-08 72.2 9.4 73 392-464 209-296 (531)
305 PF13671 AAA_33: AAA domain; P 97.3 0.00054 1.2E-08 65.3 7.1 33 394-428 2-34 (143)
306 PRK14974 cell division protein 97.3 0.0019 4.1E-08 71.9 12.4 73 390-462 139-234 (336)
307 PRK10536 hypothetical protein; 97.3 0.0018 3.9E-08 69.5 11.7 45 356-414 53-97 (262)
308 KOG2228 Origin recognition com 97.3 0.0011 2.4E-08 72.9 10.1 158 360-537 26-219 (408)
309 PF06745 KaiC: KaiC; InterPro 97.3 0.0017 3.8E-08 67.3 11.4 96 387-484 15-147 (226)
310 PF13604 AAA_30: AAA domain; P 97.3 0.00096 2.1E-08 68.5 9.1 98 392-501 19-132 (196)
311 cd00984 DnaB_C DnaB helicase C 97.3 0.002 4.3E-08 67.3 11.6 39 387-425 9-51 (242)
312 PF14516 AAA_35: AAA-like doma 97.3 0.008 1.7E-07 66.7 16.9 158 392-558 32-232 (331)
313 PF05272 VirE: Virulence-assoc 97.3 0.0018 3.9E-08 66.9 10.5 125 367-523 34-169 (198)
314 PRK06581 DNA polymerase III su 97.2 0.012 2.6E-07 62.6 16.6 137 388-539 12-163 (263)
315 TIGR03574 selen_PSTK L-seryl-t 97.2 0.0018 3.9E-08 68.5 10.5 34 394-427 2-38 (249)
316 PRK06762 hypothetical protein; 97.2 0.00095 2E-08 65.8 7.7 40 390-429 1-40 (166)
317 PF03266 NTPase_1: NTPase; In 97.2 0.00031 6.6E-09 70.7 4.2 23 393-415 1-23 (168)
318 KOG2543 Origin recognition com 97.2 0.0062 1.4E-07 68.1 14.5 160 359-537 7-193 (438)
319 KOG0477 DNA replication licens 97.2 0.0019 4.2E-08 75.4 10.8 30 392-421 483-512 (854)
320 cd01131 PilT Pilus retraction 97.2 0.0013 2.9E-08 67.4 8.8 95 393-504 3-111 (198)
321 PRK05800 cobU adenosylcobinami 97.2 0.0024 5.3E-08 64.3 10.4 34 393-426 3-36 (170)
322 cd01122 GP4d_helicase GP4d_hel 97.2 0.0023 5E-08 68.1 10.6 38 387-424 26-67 (271)
323 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.0031 6.7E-08 66.4 11.3 40 387-426 17-59 (237)
324 KOG2170 ATPase of the AAA+ sup 97.1 0.0098 2.1E-07 64.8 14.9 95 360-463 84-191 (344)
325 PRK05973 replicative DNA helic 97.1 0.0046 1E-07 65.7 12.1 36 390-425 63-101 (237)
326 COG0563 Adk Adenylate kinase a 97.1 0.0017 3.8E-08 65.9 8.5 33 393-427 2-34 (178)
327 PF00437 T2SE: Type II/IV secr 97.1 0.00064 1.4E-08 72.6 5.6 100 353-462 99-209 (270)
328 cd00227 CPT Chloramphenicol (C 97.1 0.0011 2.3E-08 66.4 6.8 37 392-428 3-39 (175)
329 PRK13947 shikimate kinase; Pro 97.1 0.0005 1.1E-08 67.9 4.3 31 393-423 3-33 (171)
330 PF06309 Torsin: Torsin; Inte 97.1 0.0035 7.6E-08 60.4 9.8 51 359-415 26-77 (127)
331 COG4088 Predicted nucleotide k 97.1 0.0022 4.7E-08 66.6 8.7 23 393-415 3-25 (261)
332 PRK09354 recA recombinase A; P 97.1 0.0022 4.7E-08 71.7 9.6 107 392-498 61-193 (349)
333 PHA02624 large T antigen; Prov 97.1 0.0028 6.1E-08 74.8 10.8 120 389-523 429-561 (647)
334 PRK09376 rho transcription ter 97.0 0.0021 4.5E-08 72.7 9.1 23 394-416 172-194 (416)
335 cd03281 ABC_MSH5_euk MutS5 hom 97.0 0.0036 7.9E-08 65.1 10.1 113 391-509 29-161 (213)
336 PRK03839 putative kinase; Prov 97.0 0.00055 1.2E-08 68.6 3.9 31 393-423 2-32 (180)
337 cd02020 CMPK Cytidine monophos 97.0 0.0019 4.1E-08 61.6 7.4 30 394-423 2-31 (147)
338 PRK12339 2-phosphoglycerate ki 97.0 0.0073 1.6E-07 62.3 12.2 30 391-420 3-32 (197)
339 COG3854 SpoIIIAA ncharacterize 97.0 0.0037 8E-08 65.9 9.9 70 393-462 139-230 (308)
340 cd00464 SK Shikimate kinase (S 97.0 0.00063 1.4E-08 65.6 4.1 31 393-423 1-31 (154)
341 cd01128 rho_factor Transcripti 97.0 0.0037 7.9E-08 66.9 10.1 26 392-417 17-42 (249)
342 PF00448 SRP54: SRP54-type pro 97.0 0.0047 1E-07 63.6 10.2 110 391-508 1-133 (196)
343 PRK00625 shikimate kinase; Pro 97.0 0.00075 1.6E-08 68.2 4.3 31 393-423 2-32 (173)
344 TIGR02782 TrbB_P P-type conjug 96.9 0.00081 1.8E-08 73.6 4.7 69 392-460 133-214 (299)
345 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0054 1.2E-07 66.0 10.9 94 355-461 57-160 (264)
346 COG5245 DYN1 Dynein, heavy cha 96.9 0.0049 1.1E-07 77.5 11.5 188 390-586 1493-1727(3164)
347 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0055 1.2E-07 65.7 10.8 39 387-425 32-73 (259)
348 PRK11889 flhF flagellar biosyn 96.9 0.011 2.3E-07 67.2 13.4 103 390-500 240-362 (436)
349 cd01130 VirB11-like_ATPase Typ 96.9 0.0011 2.3E-08 67.3 5.1 70 391-460 25-110 (186)
350 PRK13946 shikimate kinase; Pro 96.9 0.0021 4.5E-08 65.1 7.1 34 390-423 9-42 (184)
351 cd01125 repA Hexameric Replica 96.9 0.0056 1.2E-07 64.4 10.6 21 394-414 4-24 (239)
352 KOG0481 DNA replication licens 96.9 0.004 8.7E-08 71.5 9.9 126 392-529 365-519 (729)
353 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.00085 1.8E-08 67.0 4.1 35 394-430 2-36 (183)
354 PRK13695 putative NTPase; Prov 96.9 0.0059 1.3E-07 60.9 9.9 23 393-415 2-24 (174)
355 PRK13949 shikimate kinase; Pro 96.9 0.001 2.2E-08 66.8 4.1 31 393-423 3-33 (169)
356 PLN02200 adenylate kinase fami 96.8 0.0014 3.1E-08 69.2 5.5 42 387-430 39-80 (234)
357 PF13481 AAA_25: AAA domain; P 96.8 0.0045 9.7E-08 62.2 8.7 73 393-465 34-156 (193)
358 PRK04841 transcriptional regul 96.8 0.01 2.2E-07 73.4 13.7 151 392-559 33-219 (903)
359 PRK14532 adenylate kinase; Pro 96.8 0.001 2.3E-08 66.9 4.1 36 393-430 2-37 (188)
360 PRK14531 adenylate kinase; Pro 96.8 0.0012 2.7E-08 66.6 4.5 35 392-428 3-37 (183)
361 PRK13948 shikimate kinase; Pro 96.8 0.0023 5E-08 65.2 6.6 43 389-433 8-50 (182)
362 PLN02674 adenylate kinase 96.8 0.0072 1.6E-07 64.5 10.5 40 389-430 29-68 (244)
363 PHA02774 E1; Provisional 96.8 0.0043 9.3E-08 73.0 9.4 33 392-424 435-468 (613)
364 PRK06217 hypothetical protein; 96.8 0.0012 2.5E-08 66.7 4.2 31 393-423 3-33 (183)
365 cd02027 APSK Adenosine 5'-phos 96.8 0.0044 9.5E-08 60.8 8.0 34 394-427 2-38 (149)
366 TIGR01420 pilT_fam pilus retra 96.8 0.0024 5.2E-08 71.2 6.8 69 392-460 123-205 (343)
367 TIGR02236 recomb_radA DNA repa 96.8 0.0052 1.1E-07 67.2 9.3 113 388-500 92-245 (310)
368 PF00406 ADK: Adenylate kinase 96.8 0.011 2.5E-07 57.5 10.7 35 396-432 1-35 (151)
369 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.0096 2.1E-07 61.8 10.8 38 387-424 16-56 (229)
370 PF10236 DAP3: Mitochondrial r 96.8 0.044 9.6E-07 60.4 16.5 125 440-565 143-308 (309)
371 PRK00279 adk adenylate kinase; 96.7 0.0082 1.8E-07 62.1 10.1 35 393-429 2-36 (215)
372 cd01428 ADK Adenylate kinase ( 96.7 0.0013 2.8E-08 66.1 4.0 34 394-429 2-35 (194)
373 cd02021 GntK Gluconate kinase 96.7 0.0013 2.8E-08 63.7 3.9 33 394-428 2-34 (150)
374 cd03216 ABC_Carb_Monos_I This 96.7 0.0047 1E-07 61.3 8.0 104 390-503 25-143 (163)
375 PRK13900 type IV secretion sys 96.7 0.003 6.5E-08 70.2 7.2 70 391-460 160-245 (332)
376 PRK08233 hypothetical protein; 96.7 0.0061 1.3E-07 60.4 8.7 33 392-424 4-37 (182)
377 PRK04301 radA DNA repair and r 96.7 0.006 1.3E-07 67.1 9.4 114 387-500 98-251 (317)
378 PF09848 DUF2075: Uncharacteri 96.7 0.0068 1.5E-07 67.6 9.9 23 393-415 3-25 (352)
379 PF02562 PhoH: PhoH-like prote 96.7 0.0017 3.6E-08 67.6 4.7 23 393-415 21-43 (205)
380 cd03115 SRP The signal recogni 96.7 0.015 3.2E-07 57.9 11.2 35 393-427 2-39 (173)
381 KOG3347 Predicted nucleotide k 96.7 0.0012 2.6E-08 65.2 3.3 31 393-423 9-39 (176)
382 COG0703 AroK Shikimate kinase 96.7 0.0043 9.3E-08 62.8 7.3 32 392-423 3-34 (172)
383 PRK12724 flagellar biosynthesi 96.7 0.013 2.9E-07 66.9 12.0 113 390-510 222-354 (432)
384 TIGR03880 KaiC_arch_3 KaiC dom 96.7 0.018 3.9E-07 59.8 12.1 40 387-426 12-54 (224)
385 smart00487 DEXDc DEAD-like hel 96.7 0.013 2.8E-07 57.0 10.4 24 392-415 25-49 (201)
386 TIGR01313 therm_gnt_kin carboh 96.7 0.0014 3E-08 64.5 3.5 32 394-427 1-32 (163)
387 PTZ00088 adenylate kinase 1; P 96.6 0.0021 4.5E-08 67.9 4.9 33 390-422 5-37 (229)
388 PRK06547 hypothetical protein; 96.6 0.002 4.3E-08 65.1 4.6 35 389-423 13-47 (172)
389 PRK04328 hypothetical protein; 96.6 0.016 3.5E-07 61.7 11.5 38 387-424 19-59 (249)
390 TIGR02655 circ_KaiC circadian 96.6 0.0092 2E-07 69.5 10.5 75 389-463 261-366 (484)
391 PRK03731 aroL shikimate kinase 96.6 0.0021 4.4E-08 63.7 4.4 31 392-422 3-33 (171)
392 PRK14530 adenylate kinase; Pro 96.6 0.0019 4.2E-08 66.8 4.3 30 393-422 5-34 (215)
393 smart00534 MUTSac ATPase domai 96.6 0.009 1.9E-07 60.6 9.0 19 394-412 2-20 (185)
394 cd00544 CobU Adenosylcobinamid 96.6 0.017 3.8E-07 58.2 10.9 70 394-465 2-88 (169)
395 TIGR02238 recomb_DMC1 meiotic 96.6 0.009 1.9E-07 66.0 9.6 111 389-499 94-243 (313)
396 TIGR02788 VirB11 P-type DNA tr 96.6 0.004 8.6E-08 68.4 6.8 71 390-460 143-228 (308)
397 TIGR02525 plasmid_TraJ plasmid 96.6 0.0077 1.7E-07 68.0 9.2 69 393-461 151-236 (372)
398 PHA02530 pseT polynucleotide k 96.6 0.0058 1.3E-07 66.0 7.9 38 391-429 2-39 (300)
399 PRK10867 signal recognition pa 96.6 0.027 5.9E-07 64.8 13.7 75 388-462 97-195 (433)
400 PRK13833 conjugal transfer pro 96.6 0.0029 6.4E-08 70.0 5.6 69 392-460 145-225 (323)
401 PRK13894 conjugal transfer ATP 96.6 0.0029 6.2E-08 70.0 5.4 70 391-460 148-229 (319)
402 PRK05057 aroK shikimate kinase 96.6 0.0025 5.4E-08 64.1 4.5 34 391-424 4-37 (172)
403 cd00267 ABC_ATPase ABC (ATP-bi 96.6 0.0053 1.2E-07 60.1 6.7 104 392-506 26-144 (157)
404 PRK13764 ATPase; Provisional 96.5 0.0036 7.7E-08 74.5 6.3 70 391-461 257-335 (602)
405 PRK08154 anaerobic benzoate ca 96.5 0.0066 1.4E-07 66.7 8.0 35 388-422 130-164 (309)
406 PRK06696 uridine kinase; Valid 96.5 0.0049 1.1E-07 64.2 6.7 39 390-428 21-62 (223)
407 cd03222 ABC_RNaseL_inhibitor T 96.5 0.0083 1.8E-07 60.9 8.1 69 392-461 26-100 (177)
408 PLN03187 meiotic recombination 96.5 0.01 2.2E-07 66.4 9.2 108 392-499 127-273 (344)
409 TIGR03499 FlhF flagellar biosy 96.5 0.01 2.2E-07 64.5 9.1 38 390-427 193-235 (282)
410 PF01745 IPT: Isopentenyl tran 96.5 0.0042 9.1E-08 64.9 5.7 135 393-540 3-142 (233)
411 TIGR02533 type_II_gspE general 96.5 0.016 3.4E-07 67.8 11.0 95 353-461 217-322 (486)
412 PRK13808 adenylate kinase; Pro 96.5 0.012 2.7E-07 65.4 9.6 34 393-428 2-35 (333)
413 PRK13851 type IV secretion sys 96.5 0.0048 1E-07 69.0 6.4 70 391-460 162-246 (344)
414 PRK14528 adenylate kinase; Pro 96.4 0.0029 6.2E-08 64.3 4.3 30 393-422 3-32 (186)
415 TIGR00064 ftsY signal recognit 96.4 0.024 5.2E-07 61.4 11.5 38 388-425 69-109 (272)
416 PRK14527 adenylate kinase; Pro 96.4 0.003 6.5E-08 64.1 4.3 33 389-421 4-36 (191)
417 PRK05541 adenylylsulfate kinas 96.4 0.0075 1.6E-07 60.2 7.0 38 389-426 5-45 (176)
418 TIGR01448 recD_rel helicase, p 96.4 0.016 3.5E-07 70.8 11.2 100 393-505 340-458 (720)
419 PRK09519 recA DNA recombinatio 96.4 0.016 3.4E-07 70.9 10.9 111 389-499 58-194 (790)
420 COG2805 PilT Tfp pilus assembl 96.4 0.015 3.2E-07 63.5 9.6 93 391-500 124-231 (353)
421 TIGR01360 aden_kin_iso1 adenyl 96.4 0.0029 6.3E-08 63.0 4.1 29 393-421 5-33 (188)
422 COG1102 Cmk Cytidylate kinase 96.4 0.0026 5.6E-08 63.7 3.5 28 394-421 3-30 (179)
423 PRK10416 signal recognition pa 96.4 0.036 7.7E-07 61.4 12.8 37 389-425 112-151 (318)
424 TIGR01526 nadR_NMN_Atrans nico 96.4 0.0081 1.8E-07 66.6 7.8 69 392-462 163-243 (325)
425 PF12780 AAA_8: P-loop contain 96.4 0.022 4.7E-07 61.7 10.7 91 359-461 9-100 (268)
426 PRK04040 adenylate kinase; Pro 96.4 0.0033 7.2E-08 64.3 4.3 30 391-420 2-33 (188)
427 cd03228 ABCC_MRP_Like The MRP 96.4 0.0081 1.8E-07 59.9 7.0 26 390-415 27-52 (171)
428 PF08298 AAA_PrkA: PrkA AAA do 96.4 0.0071 1.5E-07 67.5 7.1 84 356-445 58-143 (358)
429 PF06414 Zeta_toxin: Zeta toxi 96.4 0.0099 2.2E-07 60.8 7.7 43 388-430 12-55 (199)
430 PRK02496 adk adenylate kinase; 96.4 0.003 6.5E-08 63.5 3.8 30 393-422 3-32 (184)
431 TIGR01425 SRP54_euk signal rec 96.4 0.04 8.8E-07 63.3 13.3 74 389-462 98-194 (429)
432 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.016 3.5E-07 56.5 8.8 69 391-461 26-99 (144)
433 cd03280 ABC_MutS2 MutS2 homolo 96.3 0.02 4.3E-07 58.7 9.8 21 392-412 29-49 (200)
434 cd03238 ABC_UvrA The excision 96.3 0.02 4.4E-07 58.0 9.6 23 392-414 22-44 (176)
435 PRK05703 flhF flagellar biosyn 96.3 0.021 4.6E-07 65.6 10.9 37 391-427 221-262 (424)
436 cd03243 ABC_MutS_homologs The 96.3 0.013 2.8E-07 60.0 8.3 22 392-413 30-51 (202)
437 cd02019 NK Nucleoside/nucleoti 96.3 0.0088 1.9E-07 51.2 5.9 30 394-423 2-32 (69)
438 PTZ00035 Rad51 protein; Provis 96.3 0.019 4.1E-07 64.1 10.2 110 389-498 116-264 (337)
439 COG2874 FlaH Predicted ATPases 96.3 0.028 6.1E-07 58.8 10.6 124 380-511 15-176 (235)
440 TIGR01351 adk adenylate kinase 96.3 0.0034 7.3E-08 64.7 3.9 28 394-421 2-29 (210)
441 TIGR02655 circ_KaiC circadian 96.3 0.03 6.6E-07 65.3 12.1 40 387-426 17-60 (484)
442 PF13238 AAA_18: AAA domain; P 96.3 0.0032 7E-08 58.3 3.3 22 394-415 1-22 (129)
443 COG2804 PulE Type II secretory 96.3 0.013 2.8E-07 67.9 8.6 93 353-462 233-339 (500)
444 KOG3928 Mitochondrial ribosome 96.3 0.066 1.4E-06 60.6 13.9 115 451-567 316-457 (461)
445 cd03247 ABCC_cytochrome_bd The 96.3 0.018 4E-07 57.6 8.9 26 390-415 27-52 (178)
446 cd03246 ABCC_Protease_Secretio 96.2 0.032 7E-07 55.7 10.4 24 392-415 29-52 (173)
447 TIGR02239 recomb_RAD51 DNA rep 96.2 0.016 3.4E-07 64.1 8.9 112 388-499 93-243 (316)
448 COG4178 ABC-type uncharacteriz 96.2 0.0086 1.9E-07 70.9 7.2 27 388-414 416-442 (604)
449 PRK00889 adenylylsulfate kinas 96.2 0.018 4E-07 57.3 8.6 37 391-427 4-43 (175)
450 COG4619 ABC-type uncharacteriz 96.2 0.025 5.4E-07 57.4 9.3 22 393-414 31-52 (223)
451 cd03230 ABC_DR_subfamily_A Thi 96.2 0.014 3.1E-07 58.2 7.9 24 392-415 27-50 (173)
452 PRK14529 adenylate kinase; Pro 96.2 0.021 4.6E-07 60.2 9.2 34 393-428 2-35 (223)
453 PLN03186 DNA repair protein RA 96.2 0.014 3E-07 65.3 8.2 111 390-500 122-271 (342)
454 PF08433 KTI12: Chromatin asso 96.2 0.023 5E-07 61.5 9.6 70 393-462 3-82 (270)
455 PF04665 Pox_A32: Poxvirus A32 96.2 0.057 1.2E-06 57.6 12.3 134 389-537 11-170 (241)
456 PRK01184 hypothetical protein; 96.2 0.0045 9.7E-08 62.1 3.9 29 393-422 3-31 (184)
457 TIGR00959 ffh signal recogniti 96.2 0.065 1.4E-06 61.7 13.6 75 388-462 96-194 (428)
458 cd03227 ABC_Class2 ABC-type Cl 96.2 0.015 3.3E-07 57.6 7.6 23 391-413 21-43 (162)
459 PRK14737 gmk guanylate kinase; 96.2 0.0077 1.7E-07 61.5 5.6 26 390-415 3-28 (186)
460 TIGR00767 rho transcription te 96.2 0.018 3.9E-07 65.5 8.9 24 393-416 170-193 (415)
461 PRK04182 cytidylate kinase; Pr 96.1 0.0051 1.1E-07 60.8 4.0 29 393-421 2-30 (180)
462 PRK04220 2-phosphoglycerate ki 96.1 0.093 2E-06 57.7 13.9 40 388-428 89-128 (301)
463 COG1936 Predicted nucleotide k 96.1 0.0041 8.9E-08 62.9 3.2 30 393-423 2-31 (180)
464 PF13521 AAA_28: AAA domain; P 96.1 0.0043 9.4E-08 61.1 3.3 27 394-421 2-28 (163)
465 cd03214 ABC_Iron-Siderophores_ 96.1 0.026 5.6E-07 56.8 8.9 25 391-415 25-49 (180)
466 PRK09302 circadian clock prote 96.1 0.036 7.8E-07 64.9 11.4 77 388-464 270-377 (509)
467 PF13245 AAA_19: Part of AAA d 96.1 0.0086 1.9E-07 52.6 4.7 32 393-424 12-50 (76)
468 COG1066 Sms Predicted ATP-depe 96.1 0.032 6.9E-07 63.2 10.2 80 387-466 88-184 (456)
469 PRK08099 bifunctional DNA-bind 96.1 0.013 2.8E-07 66.8 7.3 33 390-422 218-250 (399)
470 PRK09302 circadian clock prote 96.0 0.047 1E-06 63.9 12.0 39 388-426 28-70 (509)
471 TIGR02173 cyt_kin_arch cytidyl 96.0 0.0061 1.3E-07 59.8 3.9 29 393-421 2-30 (171)
472 cd03229 ABC_Class3 This class 96.0 0.014 3.1E-07 58.5 6.5 24 392-415 27-50 (178)
473 PF13479 AAA_24: AAA domain 96.0 0.012 2.6E-07 61.1 6.0 68 391-462 3-80 (213)
474 PF08423 Rad51: Rad51; InterP 96.0 0.024 5.2E-07 60.8 8.5 112 395-506 42-192 (256)
475 COG3842 PotA ABC-type spermidi 96.0 0.014 3.1E-07 65.2 7.0 26 388-413 26-53 (352)
476 COG1067 LonB Predicted ATP-dep 96.0 0.052 1.1E-06 65.3 12.0 225 349-594 95-399 (647)
477 COG1136 SalX ABC-type antimicr 96.0 0.047 1E-06 57.7 10.3 21 393-413 33-53 (226)
478 TIGR02768 TraA_Ti Ti-type conj 95.9 0.015 3.3E-07 71.3 7.7 96 393-500 370-477 (744)
479 cd00561 CobA_CobO_BtuR ATP:cor 95.9 0.028 6E-07 56.4 8.2 23 393-415 4-26 (159)
480 PF01583 APS_kinase: Adenylyls 95.9 0.021 4.4E-07 57.1 7.1 40 391-430 2-44 (156)
481 PRK12727 flagellar biosynthesi 95.9 0.023 5.1E-07 66.6 8.6 25 391-415 350-374 (559)
482 PRK04132 replication factor C 95.9 0.0043 9.4E-08 76.3 2.7 51 345-407 6-56 (846)
483 cd02022 DPCK Dephospho-coenzym 95.9 0.055 1.2E-06 54.5 10.1 34 394-430 2-35 (179)
484 PF13086 AAA_11: AAA domain; P 95.9 0.0063 1.4E-07 61.8 3.3 22 394-415 20-41 (236)
485 PF01580 FtsK_SpoIIIE: FtsK/Sp 95.8 0.02 4.3E-07 58.5 6.9 23 393-415 40-62 (205)
486 TIGR02524 dot_icm_DotB Dot/Icm 95.8 0.033 7.1E-07 62.7 9.0 68 393-460 136-222 (358)
487 TIGR00152 dephospho-CoA kinase 95.8 0.015 3.3E-07 58.8 5.8 35 394-430 2-36 (188)
488 cd03223 ABCD_peroxisomal_ALDP 95.8 0.037 8.1E-07 55.1 8.4 25 391-415 27-51 (166)
489 TIGR00150 HI0065_YjeE ATPase, 95.8 0.017 3.8E-07 56.2 5.8 27 392-418 23-49 (133)
490 COG1126 GlnQ ABC-type polar am 95.8 0.053 1.1E-06 57.0 9.5 21 393-413 30-50 (240)
491 TIGR02538 type_IV_pilB type IV 95.8 0.049 1.1E-06 64.8 10.7 94 355-462 293-397 (564)
492 TIGR00455 apsK adenylylsulfate 95.7 0.044 9.4E-07 55.2 8.8 40 389-428 16-58 (184)
493 PRK12726 flagellar biosynthesi 95.7 0.075 1.6E-06 60.3 11.4 61 364-427 181-245 (407)
494 COG0468 RecA RecA/RadA recombi 95.7 0.065 1.4E-06 58.4 10.5 114 387-500 54-194 (279)
495 cd03287 ABC_MSH3_euk MutS3 hom 95.7 0.047 1E-06 57.5 9.2 22 392-413 32-53 (222)
496 PRK14526 adenylate kinase; Pro 95.7 0.0098 2.1E-07 62.0 4.0 34 393-428 2-35 (211)
497 CHL00195 ycf46 Ycf46; Provisio 95.7 0.28 6.1E-06 57.5 16.2 123 450-590 81-204 (489)
498 cd03213 ABCG_EPDR ABCG transpo 95.7 0.045 9.7E-07 55.8 8.6 26 390-415 34-59 (194)
499 TIGR03819 heli_sec_ATPase heli 95.6 0.012 2.6E-07 65.7 4.7 69 392-460 179-263 (340)
500 PRK12337 2-phosphoglycerate ki 95.6 0.22 4.7E-06 57.8 14.8 31 389-419 253-283 (475)
No 1
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-128 Score=1057.96 Aligned_cols=629 Identities=56% Similarity=0.828 Sum_probs=545.6
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhhcccccccccccchHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCchhHHHhhcc
Q 003696 131 SKKIPLMVFLMGVWARLSRGIEKLMTWDWLSWWPFWRQEKRIEQLIAEANANPKDPAKQTALLSELNKQSPEAVIKRFEQ 210 (802)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~q~~~~~~l~~~~p~~vi~~~e~ 210 (802)
..+-..|+.-+..|...+..++++ .|.|..||+|-.+..++..+...+ .+ ++-..+...+...+.++++
T Consensus 108 ~~~~~~vtl~~s~~~~~k~al~~~-e~s~~~~~~~~~~~~~~~~l~a~s-------~~---~~~~~~q~~~~~g~~~~~~ 176 (752)
T KOG0734|consen 108 NISSHWVTLHDSAQSFYKNALQNL-EWSLRVVSSFELQGAHVRALPASS-------SA---LLPFYIQALQRRGFKTLKS 176 (752)
T ss_pred hhccchhhhHHHHHHHHHHHHhhc-eeeeeeecccccCcchhhccccCC-------hh---hHHHHHHHHHhcccchhhh
Confidence 355667899999999999999999 799999999999988887766532 12 2222233344466666666
Q ss_pred CCcc-cCchhHHHHHHHHHhcccccccCCCCCCCCCCCchhHHHHHHHHhccCCCCCCCCCCCCCCCCceEEEeCCCCCc
Q 003696 211 RDHE-VDSRGVVEYLRALVATNAITEYLPDEQSGKPTTLPALLQELQHRASRNTNEPFLNPGVSEKQPLHVVMVDPKVSN 289 (802)
Q Consensus 211 ~~~~-~~~~~~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (802)
+... ....+...|++.....+. ..+.++.+.+.++ ++++.....|+ .+.+.+.+.|+|++++++..++
T Consensus 177 ~~~~~~~~~~~a~~l~~~l~~~~-~~~~~~~~~~~ps-----~~e~~~~~~g~-----~n~~es~k~p~~~~~~e~~~s~ 245 (752)
T KOG0734|consen 177 REGVGRRTRSTAERLNESLANSP-SSLKGDLQVGAPS-----LVELLDKLEGT-----KNIPESHKDPFHVGFVEGFLSN 245 (752)
T ss_pred hhhhcccccccHHHHhHHHhcCc-hhcCCCccCCCch-----hHHHhhhhhcc-----CCcchhccCceeeeeecccccc
Confidence 5432 334557888888765543 2222333333332 44444444443 3456678999999999977666
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCcccccccccCCCC-CCCcccccCCHHHHH
Q 003696 290 KSRFAQELISTILFTVAVGLVWLMGAAALQKYIGSLGGIGTSGVGSSSSYAPKELNKEVMPEKN-VKTFKDVKGCDDAKQ 368 (802)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~tFdDViG~deaK~ 368 (802)
...+...++.++. +.+++++|++++..+.+..+.. +++..+. .++.+++|+.. .++|+||.|+|++|+
T Consensus 246 ~~~~~~~~~k~i~-~~i~~~~~~~G~~~~~~~~~l~-~i~~~~~---------gl~~ev~p~~~~nv~F~dVkG~DEAK~ 314 (752)
T KOG0734|consen 246 RTTKAGRLVKTIR-TTIVGYLLLLGIYALLENTGLS-GIFRSTT---------GLDSEVDPEQMKNVTFEDVKGVDEAKQ 314 (752)
T ss_pred ccchHHHHHHHHH-HHHHHHHHHHHHHHHhhccccc-ccccccc---------ccccccChhhhcccccccccChHHHHH
Confidence 6666666667766 5567888888888877765432 3332222 24456666554 678999999999999
Q ss_pred HHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhhhhHHHHHHHHHHHHh
Q 003696 369 ELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKK 448 (802)
Q Consensus 369 eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~ 448 (802)
+|+|+|+||++|.+|+++|+++||||||+||||||||+||||+|+|+++|||+.++++|.++|+|++++++|++|..|++
T Consensus 315 ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~ 394 (752)
T KOG0734|consen 315 ELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKA 394 (752)
T ss_pred HHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEcchhhhccccccCCc-chHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHH
Q 003696 449 KAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVR 527 (802)
Q Consensus 449 ~aP~ILfIDEIDaLg~~r~~~~~-~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~e 527 (802)
++||||||||||++|++|..+.. +.++++||||.+||||.++.+||||+|||+|+.||+||.||||||++|.+|.||.+
T Consensus 395 ~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~ 474 (752)
T KOG0734|consen 395 RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVR 474 (752)
T ss_pred cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcc
Confidence 99999999999999999998765 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcccccccccchH
Q 003696 528 GRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGTERKTMFISE 607 (802)
Q Consensus 528 eR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~ril~g~~~k~~~ls~ 607 (802)
+|.+||+.|+.++.+..++|+..||+.|+||+|+||+|+||+|++.|+.++...|+|.|+++|.|||+||.+++++.+++
T Consensus 475 GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG~ERks~~i~~ 554 (752)
T KOG0734|consen 475 GRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMVIDE 554 (752)
T ss_pred cHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhheeecccccccccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhhhhhHHHHHhcCCCCcceEEEEecCCCcccceEeccCCCcccccHHHHHHhHHHHhhHHHHHHHHhCCCCC
Q 003696 608 ESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQLLARLDVCMGGRVAEELIFGRDHI 687 (802)
Q Consensus 608 ~~~~~vA~HEaGHAlva~~~~~~~~v~kvtI~pRg~alG~~~~~p~~~~~~~t~~~l~~~I~v~LgGraAEel~fG~~~v 687 (802)
+.++++||||+||||||+++.++.|+||+||+|||.+||+|.++|+.|++.+||.|++++++||||||+|||+|||.|++
T Consensus 555 eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~LPe~D~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~i 634 (752)
T KOG0734|consen 555 EAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQLPEKDRYSITKAQLLARLDVCMGGRVAEELIFGTDKI 634 (752)
T ss_pred hhhhhhhhhccCceEEEeecCCCccccceeeccCCccccceeecCccchhhHHHHHHHHHHHHhhcchHHHHHhccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHHhcCCCCCCcceeccCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 003696 688 TTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKDR-----PSSEMQSRIDAEVVKLLREAYDRVKALLKKHEKQLHALA 762 (802)
Q Consensus 688 tsGa~~DL~~AT~lA~~mv~~~Gms~~~g~~~~~~~-----~~~~~~~~id~ev~~ll~~~~~ra~~lL~~~r~~l~~la 762 (802)
|+||+|||++||++|++||+.||||+++|++.+... .+++++..||.||+++|+++|+||+.||+.|.+++++||
T Consensus 635 TsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~~~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA 714 (752)
T KOG0734|consen 635 TSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDNSSSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALA 714 (752)
T ss_pred cccccchHHHHHHHHHHHHHHcCccccccceeeeccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987532 456778889999999999999999999999999999999
Q ss_pred HHHHHhcccCHHHHHHhhccCCCCCCCcch
Q 003696 763 NALLEYETLSAEEIKRILLPYREGQLPEQQ 792 (802)
Q Consensus 763 ~~Lle~etL~~~ei~~il~~~~~~~~~~~~ 792 (802)
++|||||||+++||+++|.......+..++
T Consensus 715 ~ALleYETL~A~eik~vl~g~~~~~k~~~~ 744 (752)
T KOG0734|consen 715 EALLEYETLDAKEIKRVLKGKSDELKTNQE 744 (752)
T ss_pred HHHHHhhcCCHHHHHHHHhccchhhhcccc
Confidence 999999999999999999765443333333
No 2
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-100 Score=872.04 Aligned_cols=481 Identities=55% Similarity=0.848 Sum_probs=443.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCcccccccccCCCCCCCcccccCCHHHHHHHH
Q 003696 292 RFAQELISTILFTVAVGLVWLMGAAALQKYIGSLGGIGTSGVGSSSSYAPKELNKEVMPEKNVKTFKDVKGCDDAKQELV 371 (802)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~tFdDViG~deaK~eL~ 371 (802)
.|+..+..++++.++++++|++.++.++. .+|.+..+++++ -.+...+.+..++|+||+|++++|++|.
T Consensus 95 ~~~~~~~~~lp~il~~~~~~~~~~r~~~~----g~g~~~~~~gks-------kak~~~~~~~~v~F~DVAG~dEakeel~ 163 (596)
T COG0465 95 LLASLLSTWLPFILLIGLGWFFFRRQAQG----GGGGGAFSFGKS-------KAKLYLEDQVKVTFADVAGVDEAKEELS 163 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCCcccCCChH-------HHHHhcccccCcChhhhcCcHHHHHHHH
Confidence 45555667777777778777776654321 111112333322 2233344567789999999999999999
Q ss_pred HHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhhhhHHHHHHHHHHHHhcCC
Q 003696 372 EVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAP 451 (802)
Q Consensus 372 eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~aP 451 (802)
|+|++|++|.+|..+|+++|+|+||+||||||||+||||+|+|+++||+++|+|+|.++|+|++++++|++|.+|++++|
T Consensus 164 EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP 243 (596)
T COG0465 164 ELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAP 243 (596)
T ss_pred HHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcchhhhccccccC----CcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHH
Q 003696 452 CIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVR 527 (802)
Q Consensus 452 ~ILfIDEIDaLg~~r~~~----~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~e 527 (802)
|||||||||++++.|+.. ..+.++++||||.+||||..+.+|+||++||+|+.||+||+|||||||+|.++.||..
T Consensus 244 ~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~ 323 (596)
T COG0465 244 CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIK 323 (596)
T ss_pred CeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchh
Confidence 999999999999999643 2345789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcccccccccchH
Q 003696 528 GRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGTERKTMFISE 607 (802)
Q Consensus 528 eR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~ril~g~~~k~~~ls~ 607 (802)
+|++|++.|+++.+++.++|+..||+.|+||+|+|+.|++|+|++.|++++...|++.|+++|++++++|.++++..+++
T Consensus 324 gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise 403 (596)
T COG0465 324 GREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISE 403 (596)
T ss_pred hHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhhhhhHHHHHhcCCCCcceEEEEecCCCcccceEeccCCCcccccHHHHHHhHHHHhhHHHHHHHHhCCCCC
Q 003696 608 ESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQLLARLDVCMGGRVAEELIFGRDHI 687 (802)
Q Consensus 608 ~~~~~vA~HEaGHAlva~~~~~~~~v~kvtI~pRg~alG~~~~~p~~~~~~~t~~~l~~~I~v~LgGraAEel~fG~~~v 687 (802)
++++.+||||+|||++++++++++|+||+||+|||.++|||+++|++|+.++|+++++++|+++||||||||++||. ++
T Consensus 404 ~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~~l~sk~~l~~~i~~~lgGRaAEel~~g~-e~ 482 (596)
T COG0465 404 AEKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGY-EI 482 (596)
T ss_pred hhhcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhcchhcCCccccccccHHHHHHHHHHHhCCcHhhhhhhcc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred CcccchHHHHHHHHHHHHHHhcCCCCCCcceeccC-------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003696 688 TTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD-------------RPSSEMQSRIDAEVVKLLREAYDRVKALLKKH 754 (802)
Q Consensus 688 tsGa~~DL~~AT~lA~~mv~~~Gms~~~g~~~~~~-------------~~~~~~~~~id~ev~~ll~~~~~ra~~lL~~~ 754 (802)
|+||++|+++||++|+.||++|||++.+|++.+.. ..|+++++.||.||+++++++|++++++|.+|
T Consensus 483 ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~ 562 (596)
T COG0465 483 TTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQKAKNYSEETAQEIDREVKDIIDEAYERAKELLNEN 562 (596)
T ss_pred cccchhhHHHHHHHHHHhhhhcCcchhhCceehhhcccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998864 26788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHhhccCC
Q 003696 755 EKQLHALANALLEYETLSAEEIKRILLPYR 784 (802)
Q Consensus 755 r~~l~~la~~Lle~etL~~~ei~~il~~~~ 784 (802)
++.++.+++.|+|+|||++++|+.|+....
T Consensus 563 ~~~l~~~~~~Lle~Eti~~~~i~~i~~~~~ 592 (596)
T COG0465 563 KDALETLAEMLLEKETIDAEEIKDILAGRK 592 (596)
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHhccc
Confidence 999999999999999999999999998653
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-94 Score=832.98 Aligned_cols=435 Identities=53% Similarity=0.833 Sum_probs=416.8
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh
Q 003696 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (802)
Q Consensus 350 ~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e 429 (802)
+.++.++|+||+|++++|++|+|+|.||+||++|.++|+++|+|+||+||||||||+||||+|+|+|+||+.+++++|.+
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 45566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccc-----cCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCC
Q 003696 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK-----QWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (802)
Q Consensus 430 ~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~-----~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~ 504 (802)
+++|.++.+++++|..|+.++||||||||||+++.+|+ ..+.+.++++||||.+||||..+.+|||+|+||+|+.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 99999999999999999999999999999999999994 2234568999999999999999999999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 003696 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 583 (802)
Q Consensus 505 LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It 583 (802)
||+||+|||||||+|.+++||..+|.+|++.|+++..+. +++|+..+|..|+||+|+||.|+||+|++.|++++...|+
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~ 542 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIG 542 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccc
Confidence 999999999999999999999999999999999999986 8889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccchHHHHHhHHHhhhhhHHHHHhcCCCCcceEEEEecCCCcccceEeccCCCcccccHHH
Q 003696 584 ATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQ 663 (802)
Q Consensus 584 ~edle~A~~ril~g~~~k~~~ls~~~~~~vA~HEaGHAlva~~~~~~~~v~kvtI~pRg~alG~~~~~p~~~~~~~t~~~ 663 (802)
..|+++|++|++.|.++++..++.++++.+||||||||+++|++++.+|+.|++|+| |+++||+++.|.++ +++|+++
T Consensus 543 ~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-GqalG~a~~~P~~~-~l~sk~q 620 (774)
T KOG0731|consen 543 TKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQALGYAQYLPTDD-YLLSKEQ 620 (774)
T ss_pred hhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc-CCccceEEECCccc-ccccHHH
Confidence 999999999999999999999999999999999999999999999999999999999 66999999999977 8999999
Q ss_pred HHHhHHHHhhHHHHHHHHhCCCCCCcccchHHHHHHHHHHHHHHhcCCCCCCcceeccC----------CCChHHHHHHH
Q 003696 664 LLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD----------RPSSEMQSRID 733 (802)
Q Consensus 664 l~~~I~v~LgGraAEel~fG~~~vtsGa~~DL~~AT~lA~~mv~~~Gms~~~g~~~~~~----------~~~~~~~~~id 733 (802)
|+++|++.||||||||++|| +++||||++||++||++|+.||++|||++++|++++.. ..+..+.+.||
T Consensus 621 l~~rm~m~LGGRaAEev~fg-~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~~~~~~~p~s~~~~~~Id 699 (774)
T KOG0731|consen 621 LFDRMVMALGGRAAEEVVFG-SEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPGDESFRKPYSEKTAQLID 699 (774)
T ss_pred HHHHHHHHhCcchhhheecC-CccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcccccccccCccchhHHHHHH
Confidence 99999999999999999999 78999999999999999999999999999999998632 23567889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccCCCCC
Q 003696 734 AEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPYREGQ 787 (802)
Q Consensus 734 ~ev~~ll~~~~~ra~~lL~~~r~~l~~la~~Lle~etL~~~ei~~il~~~~~~~ 787 (802)
.||++++..+|++|.++|++|++.++.||+.|||+|+|+++|+.+++.+++.++
T Consensus 700 ~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~ 753 (774)
T KOG0731|consen 700 TEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGM 753 (774)
T ss_pred HHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCcc
Confidence 999999999999999999999999999999999999999999999999888776
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=5.4e-86 Score=770.50 Aligned_cols=434 Identities=49% Similarity=0.783 Sum_probs=409.2
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh
Q 003696 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (802)
Q Consensus 350 ~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e 429 (802)
.....++|+||+|++++|+++.+++.+++++..|..+|.+.|+|+||+||||||||++|+++|+++++||+++++++|.+
T Consensus 175 ~~~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 175 EADTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred ccCCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccC----CcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCC
Q 003696 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (802)
Q Consensus 430 ~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~----~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~L 505 (802)
.+.|.+.++++++|..|+..+||||||||||.++..|+.. ....++++++||.+||++..+.+++||++||+++.|
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~L 334 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDIL 334 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhh
Confidence 9999999999999999999999999999999998776532 223468899999999999988999999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 003696 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 585 (802)
Q Consensus 506 D~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~e 585 (802)
|++++||||||+++.+++|+.++|.+||+.|+++..+..++++..+|+.|+||||+||+++|++|++.|++++...||.+
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~ 414 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMK 414 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence 99999999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccchHHHHHhHHHhhhhhHHHHHhcCCCCcceEEEEecCCCcccceEeccCCCcccccHHHHH
Q 003696 586 ELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQLL 665 (802)
Q Consensus 586 dle~A~~ril~g~~~k~~~ls~~~~~~vA~HEaGHAlva~~~~~~~~v~kvtI~pRg~alG~~~~~p~~~~~~~t~~~l~ 665 (802)
|++.|+++++.|.+++. ..++++++++||||+||||++++++..+||+||||+|||.++||+++.|.++...+|+.+++
T Consensus 415 dl~~Ai~rv~~g~~~~~-~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~~~~t~~~l~ 493 (638)
T CHL00176 415 EIDTAIDRVIAGLEGTP-LEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQSLVSRSQIL 493 (638)
T ss_pred HHHHHHHHHHhhhccCc-cccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeecCCCCCceEecCCcccccccHHHHH
Confidence 99999999999988765 46788999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhhHHHHHHHHhCCCCCCcccchHHHHHHHHHHHHHHhcCCCCCCcceeccC----------------CCChHHH
Q 003696 666 ARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD----------------RPSSEMQ 729 (802)
Q Consensus 666 ~~I~v~LgGraAEel~fG~~~vtsGa~~DL~~AT~lA~~mv~~~Gms~~~g~~~~~~----------------~~~~~~~ 729 (802)
++|++||||||||+++||++++|+||++||++||++|+.||++||||+ +|++.+.. ..++++.
T Consensus 494 ~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 572 (638)
T CHL00176 494 ARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSS-IGPISLESNNSTDPFLGRFMQRNSEYSEEIA 572 (638)
T ss_pred HHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCc-CCceeecCCCCcccccccccccccCcCHHHH
Confidence 999999999999999999888999999999999999999999999995 99987742 1356788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccCCC
Q 003696 730 SRIDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPYRE 785 (802)
Q Consensus 730 ~~id~ev~~ll~~~~~ra~~lL~~~r~~l~~la~~Lle~etL~~~ei~~il~~~~~ 785 (802)
..||.||+++|+++|++|+++|++||+.|++||++|+|+|||+++||++|++.+..
T Consensus 573 ~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~~~ 628 (638)
T CHL00176 573 DKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNSYTI 628 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999988754
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=8.4e-84 Score=757.08 Aligned_cols=434 Identities=54% Similarity=0.883 Sum_probs=412.0
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh
Q 003696 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (802)
Q Consensus 350 ~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e 429 (802)
+.....+|+|+.|.+.+++++.+++.+++++..|..++.+.|+|+||+||||||||++|+++|+++++||+.++++++.+
T Consensus 144 ~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 144 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred chhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccC----CcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCC
Q 003696 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (802)
Q Consensus 430 ~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~----~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~L 505 (802)
.+.|.+...++++|..++..+||||||||||+++.+|+.. .....+++++||.+||++..+.+++||+|||+|+.|
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~l 303 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 303 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhc
Confidence 9999999999999999999999999999999999887642 223467999999999999999999999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 003696 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 585 (802)
Q Consensus 506 D~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~e 585 (802)
|++++||||||++|.|++||.++|.+||+.|+++.++..++|+..+++.|.||||+||.++|++|+..|++.+...|+..
T Consensus 304 D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~ 383 (644)
T PRK10733 304 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMV 383 (644)
T ss_pred CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHH
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccchHHHHHhHHHhhhhhHHHHHhcCCCCcceEEEEecCCCcccceEeccCCCcccccHHHHH
Q 003696 586 ELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQLL 665 (802)
Q Consensus 586 dle~A~~ril~g~~~k~~~ls~~~~~~vA~HEaGHAlva~~~~~~~~v~kvtI~pRg~alG~~~~~p~~~~~~~t~~~l~ 665 (802)
|++.|++++.+|.+++...+++++++.+||||+|||+++++++..+|++||||+|||.++||++++|.++....||.+|+
T Consensus 384 d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~~~~~~~~~l~ 463 (644)
T PRK10733 384 EFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLE 463 (644)
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEeccCCCcceeEECCCcccccccHHHHH
Confidence 99999999999998887788999999999999999999999999999999999999999999999999998889999999
Q ss_pred HhHHHHhhHHHHHHHHhCCCCCCcccchHHHHHHHHHHHHHHhcCCCCCCcceeccC---------------CCChHHHH
Q 003696 666 ARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD---------------RPSSEMQS 730 (802)
Q Consensus 666 ~~I~v~LgGraAEel~fG~~~vtsGa~~DL~~AT~lA~~mv~~~Gms~~~g~~~~~~---------------~~~~~~~~ 730 (802)
++|+++|||||||+++||.+++|+||++||++||+||+.||++||||+++|++.+.. ..|+++..
T Consensus 464 ~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~s~~~~~ 543 (644)
T PRK10733 464 SQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETAR 543 (644)
T ss_pred HHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhcccccccccccccccccccCHHHHH
Confidence 999999999999999999889999999999999999999999999999999987642 14667889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccC
Q 003696 731 RIDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPY 783 (802)
Q Consensus 731 ~id~ev~~ll~~~~~ra~~lL~~~r~~l~~la~~Lle~etL~~~ei~~il~~~ 783 (802)
.||.||+++|+++|++|++||++||+.|++||++|+|+|||+++||++|+.++
T Consensus 544 ~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~ 596 (644)
T PRK10733 544 IIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARR 596 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999865
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=9.7e-81 Score=712.60 Aligned_cols=432 Identities=57% Similarity=0.901 Sum_probs=407.0
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccch
Q 003696 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (802)
Q Consensus 348 ~~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~ 427 (802)
..++.+.++|+||+|++++|+++++++.++++++.|..+|.+.|+|+|||||||||||++|+++|+++++||++++++++
T Consensus 45 ~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred ccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccC----CcchHHHHHHHHHHhcccccCCCEEEEeecCCCC
Q 003696 428 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (802)
Q Consensus 428 ~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~----~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe 503 (802)
.+.+.|.+.+.++++|..|+..+||||||||||.++.+++.. .....+++++||.+||++..+.+++||+|||+|+
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~ 204 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPD 204 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChh
Confidence 999999999999999999999999999999999998877542 2234688999999999998889999999999999
Q ss_pred CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 003696 504 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 583 (802)
Q Consensus 504 ~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It 583 (802)
.||++++||||||+.|++++|+.++|.+||+.++++..+..++++..++..|.|||++||.++|++|+..|.+++...|+
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~ 284 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEIT 284 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999888878899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccchHHHHHhHHHhhhhhHHHHHhcCCCCcceEEEEecCCCcccceEeccCCCcccccHHH
Q 003696 584 ATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQ 663 (802)
Q Consensus 584 ~edle~A~~ril~g~~~k~~~ls~~~~~~vA~HEaGHAlva~~~~~~~~v~kvtI~pRg~alG~~~~~p~~~~~~~t~~~ 663 (802)
.+|++.|++++..|.+++...+++++++++||||+||||++++++...|++++||.|||.++||+.+.|.++....|+.+
T Consensus 285 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~~ 364 (495)
T TIGR01241 285 MNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPRGQALGYTQFLPEEDKYLYTKSQ 364 (495)
T ss_pred HHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeecCCccceEEecCccccccCCHHH
Confidence 99999999999999887777789999999999999999999999988999999999999999999999988788899999
Q ss_pred HHHhHHHHhhHHHHHHHHhCCCCCCcccchHHHHHHHHHHHHHHhcCCCCCCcceeccC---------------CCChHH
Q 003696 664 LLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD---------------RPSSEM 728 (802)
Q Consensus 664 l~~~I~v~LgGraAEel~fG~~~vtsGa~~DL~~AT~lA~~mv~~~Gms~~~g~~~~~~---------------~~~~~~ 728 (802)
++++|++||||||||+++|| ++++|+++||++||++|+.||.+||||+++|++.+.. ..++++
T Consensus 365 l~~~i~v~LaGraAE~~~~G--~~s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l~~~~~~~~~~s~~~ 442 (495)
T TIGR01241 365 LLAQIAVLLGGRAAEEIIFG--EVTTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKAKEYSEET 442 (495)
T ss_pred HHHHHHHHhhHHHHHHHHhc--CCCCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccCccccccccccccccccCHHH
Confidence 99999999999999999999 4899999999999999999999999999999888753 235677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhc
Q 003696 729 QSRIDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILL 781 (802)
Q Consensus 729 ~~~id~ev~~ll~~~~~ra~~lL~~~r~~l~~la~~Lle~etL~~~ei~~il~ 781 (802)
...+|.||+++|+++|++|+++|++||++|++||++|+++|+|+++||++|+.
T Consensus 443 ~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 443 AREIDEEVKRIIEEAYKRAKQILTENRDELELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCeeCHHHHHHHhC
Confidence 88999999999999999999999999999999999999999999999999974
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-57 Score=481.29 Aligned_cols=250 Identities=46% Similarity=0.731 Sum_probs=241.0
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchh
Q 003696 350 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (802)
Q Consensus 350 ~~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~ 428 (802)
.+.|.+||+||.|+++++++|+|.|+. |++|+.|..+|+++|+|||||||||||||+||||+|++.++.|+.+.+|+|.
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 467889999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccC----CcchHHHHHHHHHHhcccccCCCEEEEeecCCCCC
Q 003696 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (802)
Q Consensus 429 e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~----~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~ 504 (802)
.+|+|++++.+|++|+.|+.++||||||||||+++.+|-.. +.+.++|+-+||.+||||.+..+|-||+|||+++.
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 99999999999999999999999999999999999998543 23468999999999999999999999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003696 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 584 (802)
Q Consensus 505 LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~ 584 (802)
|||||+|||||||.|+||+||.++|.+||+.|.++..+.+++|++.||+.|+|+|||||.++|.+|.+.|.|+.+..||+
T Consensus 303 LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~ 382 (406)
T COG1222 303 LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTM 382 (406)
T ss_pred cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccc
Q 003696 585 TELEFAKDRILMGTE 599 (802)
Q Consensus 585 edle~A~~ril~g~~ 599 (802)
+||..|+++++....
T Consensus 383 ~DF~~Av~KV~~~~~ 397 (406)
T COG1222 383 EDFLKAVEKVVKKKK 397 (406)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999987654
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=5.2e-55 Score=533.13 Aligned_cols=309 Identities=21% Similarity=0.249 Sum_probs=265.8
Q ss_pred hhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhh------------------------------
Q 003696 382 KFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF------------------------------ 431 (802)
Q Consensus 382 ~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~------------------------------ 431 (802)
.+.++|.++|+||||+||||||||+||||+|+++++||+.+++++|.+.+
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 34678999999999999999999999999999999999999999998543
Q ss_pred -------------hhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc---cCCCEEE
Q 003696 432 -------------VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---QNEGIIL 495 (802)
Q Consensus 432 -------------vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~---~~~~VIV 495 (802)
++++..+++.+|+.|++.+||||||||||+++.+. ....++++|+.+|++.. ...+|+|
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d-----s~~ltL~qLLneLDg~~~~~s~~~VIV 1775 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE-----SNYLSLGLLVNSLSRDCERCSTRNILV 1775 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc-----cceehHHHHHHHhccccccCCCCCEEE
Confidence 22334569999999999999999999999998752 12346899999999874 4568999
Q ss_pred EeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHH--hccCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHHHH
Q 003696 496 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELY--LQDKPLAD-DVDVKAIARGTPGFNGADLANLVNIAAI 572 (802)
Q Consensus 496 IaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~--l~~~~l~~-dvdl~~LA~~t~G~SgaDL~nLvn~Aa~ 572 (802)
|||||+|+.|||||+||||||++|.|+.|+..+|++++... .++..+.. .+|+..+|+.|+|||||||+++||+|+.
T Consensus 1776 IAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAal 1855 (2281)
T CHL00206 1776 IASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALS 1855 (2281)
T ss_pred EEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998864 34444443 3689999999999999999999999999
Q ss_pred HHHHhCCCccCHHHHHHHHHHHhcccccccccchHHHHHhHHHhhhhhHHHHHhcCCCCcceEEEEecC------CCccc
Q 003696 573 KAAVDGGEKLTATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPR------GSALG 646 (802)
Q Consensus 573 ~Aa~~~~~~It~edle~A~~ril~g~~~k~~~ls~~~~~~vA~HEaGHAlva~~~~~~~~v~kvtI~pR------g~alG 646 (802)
.|++++...|+.++++.|++|+++|.+.+.... .++ .+|+||+||||++..+...+||++|||+|+ |.++|
T Consensus 1856 iAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~~~--~~~-~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~~yl 1932 (2281)
T CHL00206 1856 ISITQKKSIIDTNTIRSALHRQTWDLRSQVRSV--QDH-GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSYL 1932 (2281)
T ss_pred HHHHcCCCccCHHHHHHHHHHHHhhhhhcccCc--chh-hhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCcccce
Confidence 999999999999999999999999987654322 333 379999999999999999999999999632 45779
Q ss_pred ceEeccCCCcccccHHHHHHhHHHHhhHHHHHHHHhCCCCCCcccchHHHHHHHHHHHHHHhcCCCCC
Q 003696 647 MVTQLPSSDETSVSQKQLLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDA 714 (802)
Q Consensus 647 ~~~~~p~~~~~~~t~~~l~~~I~v~LgGraAEel~fG~~~vtsGa~~DL~~AT~lA~~mv~~~Gms~~ 714 (802)
|++++|.+ +.+++.+++.+|.+||||||||+++|+... .++.||+.|||.+.
T Consensus 1933 ~~wyle~~--~~mkk~tiL~~Il~cLAGraAedlwf~~~~--------------~~~n~It~yg~vEn 1984 (2281)
T CHL00206 1933 YKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSLPGP--------------DEKNGITSYGLVEN 1984 (2281)
T ss_pred eEeecCCc--ccCCHHHHHHHHHHHhhhhhhhhhccCcch--------------hhhcCcccccchhh
Confidence 99999876 789999999999999999999999997632 46667777777665
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-50 Score=452.03 Aligned_cols=248 Identities=43% Similarity=0.728 Sum_probs=236.1
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccc
Q 003696 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 426 (802)
Q Consensus 348 ~~~~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se 426 (802)
...+.+.++|+||.|++++|.+|++.|.| +++|++|.++|..+|+|||||||||||||++|||+|++++++|+++.+.+
T Consensus 424 ~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpE 503 (693)
T KOG0730|consen 424 ILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPE 503 (693)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHH
Confidence 33567889999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccC-CcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCC
Q 003696 427 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (802)
Q Consensus 427 ~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~-~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~L 505 (802)
+.++|+|++++.++++|++|++.+|||||+||||++++.|+.. .+...++++|||++|||+....+|+||||||+|+.|
T Consensus 504 L~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~I 583 (693)
T KOG0730|consen 504 LFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMI 583 (693)
T ss_pred HHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhc
Confidence 9999999999999999999999999999999999999999643 345789999999999999999999999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC--CCccC
Q 003696 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG--GEKLT 583 (802)
Q Consensus 506 D~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~--~~~It 583 (802)
|+||+||||||+.|+||+||.+.|.+||+.++++.++.+++|+..||+.|+|||||||.++|++|+..|.++. ...|+
T Consensus 584 D~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~ 663 (693)
T KOG0730|consen 584 DPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEIT 663 (693)
T ss_pred CHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 45789
Q ss_pred HHHHHHHHHHHh
Q 003696 584 ATELEFAKDRIL 595 (802)
Q Consensus 584 ~edle~A~~ril 595 (802)
.+||++|+..+.
T Consensus 664 ~~hf~~al~~~r 675 (693)
T KOG0730|consen 664 WQHFEEALKAVR 675 (693)
T ss_pred HHHHHHHHHhhc
Confidence 999999998753
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-47 Score=421.47 Aligned_cols=247 Identities=42% Similarity=0.645 Sum_probs=230.1
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e 429 (802)
.-|.++|+||.|+++++.+|...|.+ +++|+.|..+|...|.|||||||||||||+||||+|+|++.+|+.+.+.++..
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 45678999999999999999997777 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCC-cchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChh
Q 003696 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPA 508 (802)
Q Consensus 430 ~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~-~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~A 508 (802)
+|+|++++.+|.+|+.|+..+|||||+||||+|..+|+... ....+.+||||.+|||...+.+|.||||||+|+.+|||
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpA 663 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPA 663 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchh
Confidence 99999999999999999999999999999999999987654 44688999999999999999999999999999999999
Q ss_pred hcCCCccceEEEccCCCHHHHHHHHHHHhc--cCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHhCC-----
Q 003696 509 LTRPGRFDRHIVVPNPDVRGRQEILELYLQ--DKPLADDVDVKAIARGTP--GFNGADLANLVNIAAIKAAVDGG----- 579 (802)
Q Consensus 509 LlRpGRFdr~I~v~lPd~eeR~~ILk~~l~--~~~l~~dvdl~~LA~~t~--G~SgaDL~nLvn~Aa~~Aa~~~~----- 579 (802)
++||||||+.++|++|+.++|.+||+.+.+ +.++.+|+|++.||+.+. ||||+||..||++|.+.|.++.-
T Consensus 664 iLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~ 743 (802)
T KOG0733|consen 664 ILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDS 743 (802)
T ss_pred hcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999 778889999999999877 99999999999999999887521
Q ss_pred -----------CccCHHHHHHHHHHHhcc
Q 003696 580 -----------EKLTATELEFAKDRILMG 597 (802)
Q Consensus 580 -----------~~It~edle~A~~ril~g 597 (802)
..+|..||++|+.++...
T Consensus 744 ~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 744 SEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred cCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 126777999999988543
No 11
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-44 Score=366.65 Aligned_cols=280 Identities=35% Similarity=0.537 Sum_probs=248.4
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCcccccccccCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCC
Q 003696 311 WLMGAAALQKYIGSLGGIGTSGVGSSSSYAPKELNKEVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGK 389 (802)
Q Consensus 311 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~ 389 (802)
.....+++++....+-+.-+...+++-++. -..+++.+++.||.|++-.|+++++.++. |.+.+.|.++|+.
T Consensus 115 kps~svalhrhsnalvdvlppeadssi~ml-------~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigid 187 (408)
T KOG0727|consen 115 KPSASVALHRHSNALVDVLPPEADSSISML-------GPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGID 187 (408)
T ss_pred CCccchhhhhcccceeeccCCccccccccc-------CCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCC
Confidence 334455666655444443333333332221 12477889999999999999999999998 8899999999999
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccC
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW 469 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~ 469 (802)
+|+|||||||||||||+||+|+|+.....|+.+.+|+|..+|.|++...+|++|+.|+.++|+||||||||++..+|=..
T Consensus 188 pprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfda 267 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDA 267 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887322
Q ss_pred ----CcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCc
Q 003696 470 ----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADD 545 (802)
Q Consensus 470 ----~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~d 545 (802)
+.+.++.+-.||++||||.+..+|-||.+||+.+.|||||+||||+|+.|+||+||.++++-++.....+..+.++
T Consensus 268 qtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~ 347 (408)
T KOG0727|consen 268 QTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDE 347 (408)
T ss_pred cccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcc
Confidence 2345788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcc
Q 003696 546 VDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMG 597 (802)
Q Consensus 546 vdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~ril~g 597 (802)
+|++.+..+-+..|++||..+|++|.++|.+.++-.|...|+++|...++..
T Consensus 348 vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~vk~ 399 (408)
T KOG0727|consen 348 VDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVKK 399 (408)
T ss_pred cCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999999999887543
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-44 Score=399.69 Aligned_cols=224 Identities=43% Similarity=0.705 Sum_probs=214.3
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhh
Q 003696 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVG 433 (802)
Q Consensus 354 ~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG 433 (802)
.++|+||.|.+....+|.+++..+++|+.|..+|..+|+||||+||||||||+||+|+|+++++||+.+++.++++.+.|
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG 265 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG 265 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcch-HHHHHHHHHHhcccccC----CCEEEEeecCCCCCCChh
Q 003696 434 VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHT-KKTLHQLLVEMDGFEQN----EGIILMAATNLPDILDPA 508 (802)
Q Consensus 434 ~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~-~~tLnqLL~eLDg~~~~----~~VIVIaATN~pe~LD~A 508 (802)
++++++|++|++|+..+|||+||||||+++++|...+.++ ++.+.|||..||+.... .+|+||||||+|+.||++
T Consensus 266 ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpa 345 (802)
T KOG0733|consen 266 ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPA 345 (802)
T ss_pred ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHH
Confidence 9999999999999999999999999999999998755443 67889999999998554 579999999999999999
Q ss_pred hcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 003696 509 LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 577 (802)
Q Consensus 509 LlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~ 577 (802)
|+|+||||+.|.+..|+..+|.+||+..+++..+..++|+..||+.|+||.|+||..||.+|+..|.++
T Consensus 346 LRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 346 LRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred HhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999876
No 13
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-44 Score=366.06 Aligned_cols=248 Identities=39% Similarity=0.639 Sum_probs=234.9
Q ss_pred cCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccch
Q 003696 349 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (802)
Q Consensus 349 ~~~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~ 427 (802)
.+++|..+++||.|++...++|.+.+-. +.++++|.++|.++|+|+|+|||||||||++|||.|...+..|+.+.+..+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 3577888999999999999999996655 899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccC----CcchHHHHHHHHHHhcccccCCCEEEEeecCCCC
Q 003696 428 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (802)
Q Consensus 428 ~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~----~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe 503 (802)
..+|.|.+++.+|+.|..|+..+|+||||||+|++|.+|-.. +.+.+++...||+++|||..+..|-||++||+.+
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvD 321 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVD 321 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccc
Confidence 999999999999999999999999999999999999988543 2346788899999999999999999999999999
Q ss_pred CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 003696 504 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 583 (802)
Q Consensus 504 ~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It 583 (802)
.|||||+|.||+||.|+||.|+.+.|..|++.|.++....+|++++++|+.|++|+|++...+|-+|.+.|.+++...|+
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~ 401 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVT 401 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 003696 584 ATELEFAKDRILM 596 (802)
Q Consensus 584 ~edle~A~~ril~ 596 (802)
.+||.+++..+..
T Consensus 402 heDfmegI~eVqa 414 (424)
T KOG0652|consen 402 HEDFMEGILEVQA 414 (424)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887643
No 14
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-44 Score=368.01 Aligned_cols=252 Identities=38% Similarity=0.640 Sum_probs=239.1
Q ss_pred cCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccch
Q 003696 349 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (802)
Q Consensus 349 ~~~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~ 427 (802)
.++++.+|+.||.||.+..+.|+++++. +.+|++|.++|+.+|+|||||||||||||++|||+|+..+.-|+.+-+|++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 3578889999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccC----CcchHHHHHHHHHHhcccccCCCEEEEeecCCCC
Q 003696 428 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (802)
Q Consensus 428 ~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~----~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe 503 (802)
..+|+|+++..+|++|+.|+....||||+||||++|+.|=.. +.+.+++...|+.++|||..+.++-|+.|||+|+
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpd 327 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPD 327 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCC
Confidence 999999999999999999999999999999999999887322 3346788889999999999999999999999999
Q ss_pred CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 003696 504 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 583 (802)
Q Consensus 504 ~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It 583 (802)
.|||||+||||+|+.++|.+||.++|..||+.|.+......|+-++.||+.++.-+|++|+.+|.+|.+.|.+..++..|
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~at 407 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVAT 407 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccc
Q 003696 584 ATELEFAKDRILMGTER 600 (802)
Q Consensus 584 ~edle~A~~ril~g~~~ 600 (802)
..||..|+++++.|-.+
T Consensus 408 ekdfl~av~kvvkgy~k 424 (435)
T KOG0729|consen 408 EKDFLDAVNKVVKGYAK 424 (435)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988654
No 15
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-43 Score=362.38 Aligned_cols=251 Identities=38% Similarity=0.646 Sum_probs=237.6
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e 429 (802)
+-|..+++-|.|.+...++++++++. .++|+.|..+|+..|+|+|||||||||||+||+|+|+...+.|+.++++++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 33556899999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccC----CcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCC
Q 003696 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (802)
Q Consensus 430 ~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~----~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~L 505 (802)
+|.|++...+|++|-.|+.++|+|||+||||++|..|... +++.+++...||+++|||+...++-||.|||+.+.|
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 9999999999999999999999999999999999988543 234688899999999999999999999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 003696 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 585 (802)
Q Consensus 506 D~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~e 585 (802)
|+||+||||+||.|+||+|+.+.|.+||+.|.++..+...+++..||...+|.||+++..+|.+|.+.|.++.+-.+|.+
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqe 379 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQE 379 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccc
Q 003696 586 ELEFAKDRILMGTERK 601 (802)
Q Consensus 586 dle~A~~ril~g~~~k 601 (802)
||+-|+.+++.-...+
T Consensus 380 dfemav~kvm~k~~e~ 395 (404)
T KOG0728|consen 380 DFEMAVAKVMQKDSEK 395 (404)
T ss_pred HHHHHHHHHHhccccc
Confidence 9999999998754433
No 16
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.6e-43 Score=362.80 Aligned_cols=238 Identities=39% Similarity=0.675 Sum_probs=224.6
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhh
Q 003696 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 431 (802)
Q Consensus 352 ~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~ 431 (802)
.+..+|+||+|++++|+..+-++++|.+|++|..+. |++||||||||||||++|||+|+++++||+.+.+.++...+
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHHhhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 456799999999999999999999999999987654 88999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccC--CcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhh
Q 003696 432 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW--EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPAL 509 (802)
Q Consensus 432 vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~--~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~AL 509 (802)
+|.++++++++|+.|++.+|||+||||+|+++-.|.-. .+.....+|.||.+|||...+.+|+.|||||+|+.||+++
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~ai 271 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAI 271 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHH
Confidence 99999999999999999999999999999998877532 4567889999999999999999999999999999999999
Q ss_pred cCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHH-HHHHHHHHHHHHhCCCccCHHHHH
Q 003696 510 TRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLA-NLVNIAAIKAAVDGGEKLTATELE 588 (802)
Q Consensus 510 lRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~-nLvn~Aa~~Aa~~~~~~It~edle 588 (802)
++ ||...|+|.+|+.++|.+|++.++++.++.-+.++..+++.|.|+||+||. .++..|...|..++++.|+.+|++
T Consensus 272 Rs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie 349 (368)
T COG1223 272 RS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIE 349 (368)
T ss_pred Hh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHH
Confidence 98 999999999999999999999999999999999999999999999999997 478888889999999999999999
Q ss_pred HHHHHH
Q 003696 589 FAKDRI 594 (802)
Q Consensus 589 ~A~~ri 594 (802)
+|+.+.
T Consensus 350 ~al~k~ 355 (368)
T COG1223 350 KALKKE 355 (368)
T ss_pred HHHHhh
Confidence 999973
No 17
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=3.5e-43 Score=362.16 Aligned_cols=197 Identities=49% Similarity=0.699 Sum_probs=175.4
Q ss_pred CHHHHHHHHHHHhcccccccccchHHHHHhHHHhhhhhHHHHHhcCCCCcceEEEEecCCCcccceEeccCCCcccccHH
Q 003696 583 TATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQK 662 (802)
Q Consensus 583 t~edle~A~~ril~g~~~k~~~ls~~~~~~vA~HEaGHAlva~~~~~~~~v~kvtI~pRg~alG~~~~~p~~~~~~~t~~ 662 (802)
|++||++|+++++.|.+++...+++++++++|||||||||++++++...||+++||+|||.++||+.+.|.++....||.
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~ 80 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQFTPDEDRYIRTRS 80 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEECHHTT-SS-BHH
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEeccchhcccccHH
Confidence 68999999999999999877789999999999999999999999998899999999999999999999999888789999
Q ss_pred HHHHhHHHHhhHHHHHHHHhCCCCCCcccchHHHHHHHHHHHHHHhcCCCCCCcceeccC----------------CCCh
Q 003696 663 QLLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD----------------RPSS 726 (802)
Q Consensus 663 ~l~~~I~v~LgGraAEel~fG~~~vtsGa~~DL~~AT~lA~~mv~~~Gms~~~g~~~~~~----------------~~~~ 726 (802)
+++++|++||||||||+++||.+++|+|+++||++||+||+.||.+||||+.+|++.+.. ..+.
T Consensus 81 ~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~ 160 (213)
T PF01434_consen 81 YLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSRRPMSE 160 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EEESS-H
T ss_pred HHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccccccccccccCCcch
Confidence 999999999999999999999889999999999999999999999999999999987532 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHh
Q 003696 727 EMQSRIDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRI 779 (802)
Q Consensus 727 ~~~~~id~ev~~ll~~~~~ra~~lL~~~r~~l~~la~~Lle~etL~~~ei~~i 779 (802)
++...+|.+|+++|+++|++|+++|++||+.|++||++|+++++|+++||++|
T Consensus 161 ~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 161 ETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 78889999999999999999999999999999999999999999999999986
No 18
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-43 Score=368.19 Aligned_cols=248 Identities=37% Similarity=0.633 Sum_probs=235.8
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e 429 (802)
+.|..+|.||.|++...+++++.++. |.+|+.|..+|+++|+||+|||+||||||+||+|+|+.....|+.+-++++..
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 45667999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCC----cchHHHHHHHHHHhcccccCCCEEEEeecCCCCCC
Q 003696 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (802)
Q Consensus 430 ~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~----~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~L 505 (802)
+|.|.+.+.+|++|+.|..++|+|+||||||++|.+|-..+ .+.++++..||+++|||..+..|-||.|||+.+.|
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999999885332 23577888999999999999999999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 003696 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 585 (802)
Q Consensus 506 D~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~e 585 (802)
||||.||||+||.|.|++||...++.||..|..+..+..+++++.+...-..+||+||..+|.+|.+.|.++.+..++++
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~ 417 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTME 417 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 003696 586 ELEFAKDRILMGT 598 (802)
Q Consensus 586 dle~A~~ril~g~ 598 (802)
||..|.++++...
T Consensus 418 DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 418 DFKKAKEKVLYKK 430 (440)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998654
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-42 Score=371.56 Aligned_cols=249 Identities=34% Similarity=0.542 Sum_probs=223.1
Q ss_pred cccccCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEee
Q 003696 345 NKEVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (802)
Q Consensus 345 ~~~~~~~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is 423 (802)
...+....+.++|+||+|.+++|+-|+|.|-. +.-|+.|.. ..++-+|||++||||||||+||||+|.|++..||.|+
T Consensus 199 erdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVS 277 (491)
T KOG0738|consen 199 ERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVS 277 (491)
T ss_pred HHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEec
Confidence 44556677889999999999999999997766 888988874 2344489999999999999999999999999999999
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcc--hHHHHHHHHHHhcccccC-C---CEEEEe
Q 003696 424 GSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH--TKKTLHQLLVEMDGFEQN-E---GIILMA 497 (802)
Q Consensus 424 ~se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~--~~~tLnqLL~eLDg~~~~-~---~VIVIa 497 (802)
.+.+.++|-|++++.+|-+|+.|+.++|++|||||||+|+.+|+..+.+ +++.-+.||.+|||.... . -|.|+|
T Consensus 278 sstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLA 357 (491)
T KOG0738|consen 278 SSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLA 357 (491)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEe
Confidence 9999999999999999999999999999999999999999999876543 578889999999998543 2 389999
Q ss_pred ecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 003696 498 ATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 577 (802)
Q Consensus 498 ATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~ 577 (802)
|||.||+||.|++| ||.+.|+||+||.++|..+|+..++.....++++++.|++.++||||+||.++|++|.+++.|+
T Consensus 358 ATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR 435 (491)
T KOG0738|consen 358 ATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRR 435 (491)
T ss_pred ccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999885
Q ss_pred CC-----------------CccCHHHHHHHHHHHhc
Q 003696 578 GG-----------------EKLTATELEFAKDRILM 596 (802)
Q Consensus 578 ~~-----------------~~It~edle~A~~ril~ 596 (802)
.. ..|+..||+.|+.++..
T Consensus 436 ~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 436 KIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred HHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 22 23777888888877643
No 20
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-42 Score=392.43 Aligned_cols=247 Identities=37% Similarity=0.631 Sum_probs=225.8
Q ss_pred cCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccch
Q 003696 349 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (802)
Q Consensus 349 ~~~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~ 427 (802)
.|+-|.++|+||.|.+++|.++.+-+.. |++|+.|.. |.+...|||||||||||||++|||+|.|+...|+.+.+.++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 3677889999999999999999999988 999999875 77777799999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccC---CcchHHHHHHHHHHhcccc--cCCCEEEEeecCCC
Q 003696 428 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW---EGHTKKTLHQLLVEMDGFE--QNEGIILMAATNLP 502 (802)
Q Consensus 428 ~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~---~~~~~~tLnqLL~eLDg~~--~~~~VIVIaATN~p 502 (802)
..||+|++++++|++|+.||..+|||||+||+|.++.+|+.. ++-+.+++.|||.+|||+. ...+|+||||||+|
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRP 821 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP 821 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCc
Confidence 999999999999999999999999999999999999998754 3567999999999999997 46789999999999
Q ss_pred CCCChhhcCCCccceEEEccCC-CHHHHHHHHHHHhccCCCCCcccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHhCC-
Q 003696 503 DILDPALTRPGRFDRHIVVPNP-DVRGRQEILELYLQDKPLADDVDVKAIARGTP-GFNGADLANLVNIAAIKAAVDGG- 579 (802)
Q Consensus 503 e~LD~ALlRpGRFdr~I~v~lP-d~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~-G~SgaDL~nLvn~Aa~~Aa~~~~- 579 (802)
+.|||+|+||||||+.++++++ |.+.+..+|+...++..+..++|+.+||+.++ .|||||+..+|-.|.+.|.++.-
T Consensus 822 DLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 822 DLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred cccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877 56678889999999999999999999999986 69999999999999999887621
Q ss_pred ----------------CccCHHHHHHHHHHHhc
Q 003696 580 ----------------EKLTATELEFAKDRILM 596 (802)
Q Consensus 580 ----------------~~It~edle~A~~ril~ 596 (802)
-.|+++||-.+.++...
T Consensus 902 ~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~P 934 (953)
T KOG0736|consen 902 DIESGTISEEEQESSSVRVTMEDFLKSAKRLQP 934 (953)
T ss_pred HhhhccccccccCCceEEEEHHHHHHHHHhcCC
Confidence 13789999999988644
No 21
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=8.7e-41 Score=372.95 Aligned_cols=249 Identities=37% Similarity=0.603 Sum_probs=233.3
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchh
Q 003696 350 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (802)
Q Consensus 350 ~~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~ 428 (802)
.+.+.++|+||+|++.+|++|++.+.+ +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 456778999999999999999999876 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCC----cchHHHHHHHHHHhcccccCCCEEEEeecCCCCC
Q 003696 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (802)
Q Consensus 429 e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~----~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~ 504 (802)
..|.|.+.+.++++|..|+..+||||||||||.++.+|.... ...++.+.++|..||++....+++||+|||+++.
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 999999999999999999999999999999999987764321 2346788999999999988889999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003696 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 584 (802)
Q Consensus 505 LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~ 584 (802)
||++++||||||+.|+|++|+.++|..||+.++.+..+..++|+..++..|+||||+||.++|++|++.|.+++...|+.
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~ 376 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILP 376 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc
Q 003696 585 TELEFAKDRILMGT 598 (802)
Q Consensus 585 edle~A~~ril~g~ 598 (802)
+||..|+.+++.+.
T Consensus 377 ~df~~A~~~v~~~~ 390 (398)
T PTZ00454 377 KDFEKGYKTVVRKT 390 (398)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987653
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.6e-39 Score=362.53 Aligned_cols=252 Identities=46% Similarity=0.687 Sum_probs=234.1
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchh
Q 003696 350 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (802)
Q Consensus 350 ~~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~ 428 (802)
.+.+.++|+||+|.++++++|++.+.+ +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 355678999999999999999998877 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCC----cchHHHHHHHHHHhcccccCCCEEEEeecCCCCC
Q 003696 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (802)
Q Consensus 429 e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~----~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~ 504 (802)
..|.|.+.+.++.+|..++..+||||||||+|.++.++.... ....+++.+++.+++++....+++||+|||+++.
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDI 282 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhh
Confidence 999999999999999999999999999999999987765432 2346678899999999988889999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003696 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 584 (802)
Q Consensus 505 LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~ 584 (802)
||++++||||||+.|+|++|+.++|.+||+.++++..+..++++..++..|.||+|+||.++|++|++.|.+++...|+.
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~ 362 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTM 362 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence 99999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccc
Q 003696 585 TELEFAKDRILMGTERK 601 (802)
Q Consensus 585 edle~A~~ril~g~~~k 601 (802)
+||..|++++..+....
T Consensus 363 ~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 363 EDFLKAIEKVMGKEEKD 379 (389)
T ss_pred HHHHHHHHHHhcccccc
Confidence 99999999987765543
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=3.6e-39 Score=362.77 Aligned_cols=248 Identities=38% Similarity=0.650 Sum_probs=231.8
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchh
Q 003696 350 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (802)
Q Consensus 350 ~~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~ 428 (802)
.+.+..+|+||.|+++++++|++.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 355678999999999999999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCC----cchHHHHHHHHHHhcccccCCCEEEEeecCCCCC
Q 003696 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (802)
Q Consensus 429 e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~----~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~ 504 (802)
..|.|.+...++.+|..|+.+.||||||||||.++.+|.... .....++.++|..||++....++.||+|||+++.
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 999999999999999999999999999999999988764321 2246778899999999988889999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003696 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 584 (802)
Q Consensus 505 LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~ 584 (802)
||++++||||||+.|+|++||.++|.+||+.++.+..+..++|+..++..+.|+||+||.++|++|++.|.++++..|+.
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~ 414 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQ 414 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCH
Confidence 99999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 003696 585 TELEFAKDRILMG 597 (802)
Q Consensus 585 edle~A~~ril~g 597 (802)
+||+.|+++++..
T Consensus 415 ~D~~~A~~~v~~~ 427 (438)
T PTZ00361 415 ADFRKAKEKVLYR 427 (438)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998654
No 24
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-39 Score=367.22 Aligned_cols=247 Identities=48% Similarity=0.726 Sum_probs=231.8
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccc
Q 003696 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 426 (802)
Q Consensus 348 ~~~~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se 426 (802)
+....+.++|+|+.|.+++|+.+++.+.+ ++.++.|...+.+.|+|+|||||||||||++|+|+|.+++.+|+.+.+++
T Consensus 232 ~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~ 311 (494)
T COG0464 232 VLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE 311 (494)
T ss_pred cccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH
Confidence 33466778999999999999999999999 78999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcc-hHHHHHHHHHHhcccccCCCEEEEeecCCCCCC
Q 003696 427 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH-TKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (802)
Q Consensus 427 ~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~-~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~L 505 (802)
+..+|+|++++.++.+|..|++.+||||||||+|++...|+..... ..+.+++||.+|++.+...+|+||+|||+|+.|
T Consensus 312 l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 312 LLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred HhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 9999999999999999999999999999999999999988765433 368999999999999999999999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCC--CCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-CCcc
Q 003696 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP--LADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG-GEKL 582 (802)
Q Consensus 506 D~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~--l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~-~~~I 582 (802)
|++++||||||+.++|++||.++|.+|++.++++.. +..++|+..+++.|.||+|+||.++|++|++.+.++. ...|
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~ 471 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREV 471 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999998544 4578999999999999999999999999999999998 7899
Q ss_pred CHHHHHHHHHHH
Q 003696 583 TATELEFAKDRI 594 (802)
Q Consensus 583 t~edle~A~~ri 594 (802)
|.+|+..|+.++
T Consensus 472 ~~~~~~~a~~~~ 483 (494)
T COG0464 472 TLDDFLDALKKI 483 (494)
T ss_pred cHHHHHHHHHhc
Confidence 999999999884
No 25
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.1e-38 Score=377.42 Aligned_cols=245 Identities=43% Similarity=0.704 Sum_probs=227.7
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e 429 (802)
+.+.++|+||+|++.+|++|++.+.+ +++++.|..+|.+.|+|+|||||||||||++|+++|++++.+|+.++++++..
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 34567999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCC--cchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCCh
Q 003696 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE--GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP 507 (802)
Q Consensus 430 ~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~--~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ 507 (802)
+|+|.+++.++.+|..|+..+||||||||||.++..|+... ...+..+++||.+||++....+++||+|||+|+.||+
T Consensus 526 ~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~ 605 (733)
T TIGR01243 526 KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDP 605 (733)
T ss_pred cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCH
Confidence 99999999999999999999999999999999998876432 2356789999999999988889999999999999999
Q ss_pred hhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC---------
Q 003696 508 ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG--------- 578 (802)
Q Consensus 508 ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~--------- 578 (802)
+++||||||+.+++++||.++|.+||+.+.++..+..++|+..+|+.|.||||+||.++|++|+..|.++.
T Consensus 606 allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~ 685 (733)
T TIGR01243 606 ALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKL 685 (733)
T ss_pred hhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhh
Confidence 99999999999999999999999999999999998899999999999999999999999999999888742
Q ss_pred ---------CCccCHHHHHHHHHHHh
Q 003696 579 ---------GEKLTATELEFAKDRIL 595 (802)
Q Consensus 579 ---------~~~It~edle~A~~ril 595 (802)
...|+.+||..|+.++-
T Consensus 686 ~~~~~~~~~~~~i~~~~f~~al~~~~ 711 (733)
T TIGR01243 686 EVGEEEFLKDLKVEMRHFLEALKKVK 711 (733)
T ss_pred hcccccccccCcccHHHHHHHHHHcC
Confidence 12689999999998763
No 26
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-38 Score=358.44 Aligned_cols=225 Identities=40% Similarity=0.660 Sum_probs=215.5
Q ss_pred CCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhh
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 431 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~ 431 (802)
....|+||.|..++|+.|++++.+ -+.|..|...+.+.+.|||||||||||||+||-|+|..++..|+.+.+.++..+|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 337899999999999999999999 7899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccC-CcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhc
Q 003696 432 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 510 (802)
Q Consensus 432 vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~-~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALl 510 (802)
.|.+++.+|++|..|+..+|||||+||+|.++.+|+.. .+-+.+++||||.+|||.+.-.||.|+|||.+|+.|||||+
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALL 821 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALL 821 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhc
Confidence 99999999999999999999999999999999999854 46789999999999999999999999999999999999999
Q ss_pred CCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 003696 511 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 577 (802)
Q Consensus 511 RpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~ 577 (802)
||||+|+.++.++|+..+|.+|++.......++.++|++.+|..|+|||||||..++..|.+.|..+
T Consensus 822 RpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 822 RPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred CCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888999999999999999999999999999998887654
No 27
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-39 Score=337.83 Aligned_cols=231 Identities=38% Similarity=0.644 Sum_probs=207.3
Q ss_pred ccccccCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEe
Q 003696 344 LNKEVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (802)
Q Consensus 344 ~~~~~~~~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~i 422 (802)
++..+.-++|.++|+||+|.+.+|+.|+|.|-. ++.|..|+. +.++-+|+||||||||||+.||+|+|.|++..||.+
T Consensus 119 L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv 197 (439)
T KOG0739|consen 119 LNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV 197 (439)
T ss_pred hhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe
Confidence 344566788999999999999999999997765 888888873 233448999999999999999999999999999999
Q ss_pred eccchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcc-hHHHHHHHHHHhccccc-CCCEEEEeecC
Q 003696 423 AGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH-TKKTLHQLLVEMDGFEQ-NEGIILMAATN 500 (802)
Q Consensus 423 s~se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~-~~~tLnqLL~eLDg~~~-~~~VIVIaATN 500 (802)
+.++++++|.|++++.++++|+.|+.++|+||||||||.+++.|+...++ .++.-..+|.+|.|... +.+|+|++|||
T Consensus 198 SSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 198 SSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred ehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 99999999999999999999999999999999999999999998876544 46677789999999854 57899999999
Q ss_pred CCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 003696 501 LPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 577 (802)
Q Consensus 501 ~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~ 577 (802)
-|+.||.|++| ||+++|+||+|+...|..+++.|+.+.+.. .+.|+..+++.|+||||+||.-+|+.|.+.-.|.
T Consensus 278 iPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 278 IPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred CchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 99999999999 999999999999999999999999877654 5678999999999999999999999988776654
No 28
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3.7e-37 Score=350.96 Aligned_cols=239 Identities=26% Similarity=0.410 Sum_probs=212.1
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhh
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 432 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~v 432 (802)
+..+|+||.|++.+|++|++....+ +..+...|.+.|+|+|||||||||||++|+++|++++.||+.++++.+..+|+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 4568999999999999999866543 23456678999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCcEEEEcchhhhcccccc--CCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhc
Q 003696 433 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ--WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 510 (802)
Q Consensus 433 G~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~--~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALl 510 (802)
|.++++++++|..|+..+||||||||||.+..++.. ..+...+.+++++..|+. .+.+|+||+|||+++.||++++
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~all 378 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEIL 378 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHHh
Confidence 999999999999999999999999999998765432 234457788899998884 4568999999999999999999
Q ss_pred CCCccceEEEccCCCHHHHHHHHHHHhccCCCC--CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003696 511 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA--DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 588 (802)
Q Consensus 511 RpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~--~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle 588 (802)
||||||+.++|++|+.++|.+||+.|+++.... .+.|+..+|+.|.||||+||+++|++|+..|..++ ..++.+|+.
T Consensus 379 R~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~dl~ 457 (489)
T CHL00195 379 RKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTDDIL 457 (489)
T ss_pred CCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHHHHH
Confidence 999999999999999999999999999886433 47889999999999999999999999999887765 679999999
Q ss_pred HHHHHHhc
Q 003696 589 FAKDRILM 596 (802)
Q Consensus 589 ~A~~ril~ 596 (802)
.|+.++.+
T Consensus 458 ~a~~~~~P 465 (489)
T CHL00195 458 LALKQFIP 465 (489)
T ss_pred HHHHhcCC
Confidence 99998754
No 29
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-37 Score=334.07 Aligned_cols=229 Identities=37% Similarity=0.588 Sum_probs=208.1
Q ss_pred cccCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcC-CCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeec
Q 003696 347 EVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLG-GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 424 (802)
Q Consensus 347 ~~~~~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG-~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~ 424 (802)
.+.|..-.++|+||.|++++|++|++.|-. ++.|+.|..-+ .++|+|||||||||||||++|+|+|.++|.+|+.++.
T Consensus 81 ~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~ 160 (386)
T KOG0737|consen 81 VVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV 160 (386)
T ss_pred ccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeec
Confidence 345666778999999999999999998877 99999986322 3688999999999999999999999999999999999
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCC-cchHHHHHHHHHHhcccccCCC--EEEEeecCC
Q 003696 425 SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQNEG--IILMAATNL 501 (802)
Q Consensus 425 se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~-~~~~~tLnqLL~eLDg~~~~~~--VIVIaATN~ 501 (802)
+.+.++|.|++.+.++.+|..|.+-+||||||||+|.+.+.|...+ ..+...-+++....||+..+.+ |+|+||||+
T Consensus 161 s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR 240 (386)
T KOG0737|consen 161 SNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNR 240 (386)
T ss_pred cccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCC
Confidence 9999999999999999999999999999999999999998884332 2245666889999999977655 999999999
Q ss_pred CCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 003696 502 PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 577 (802)
Q Consensus 502 pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~ 577 (802)
|.+||.|++| |+.++++|++|+.++|.+||+.++++..+.+++|+..+|+.|.||||.||.++|..|+....++
T Consensus 241 P~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 241 PFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999877654
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=8.9e-37 Score=337.34 Aligned_cols=245 Identities=46% Similarity=0.720 Sum_probs=227.5
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchh
Q 003696 350 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (802)
Q Consensus 350 ~~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~ 428 (802)
.+.+.++|+||.|.++++++|.+.+.. +.++..|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 355678999999999999999998876 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCC----cchHHHHHHHHHHhcccccCCCEEEEeecCCCCC
Q 003696 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (802)
Q Consensus 429 e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~----~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~ 504 (802)
..|.|.+...++.+|..++...|+||||||+|.++.++.... ...+.++.+++.+++++....++.||+|||+++.
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 999999999999999999999999999999999987664321 2345778899999999887789999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003696 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 584 (802)
Q Consensus 505 LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~ 584 (802)
+|++++||||||+.|+|+.|+.++|.+||+.++.+..+..++++..+++.|.||+|+||.++|++|+..|.++++..|+.
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~ 353 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTM 353 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Confidence 99999999999999999999999999999999988888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 003696 585 TELEFAKDRI 594 (802)
Q Consensus 585 edle~A~~ri 594 (802)
+||..|++++
T Consensus 354 ~d~~~a~~~~ 363 (364)
T TIGR01242 354 DDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHh
Confidence 9999999886
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=327.38 Aligned_cols=241 Identities=40% Similarity=0.636 Sum_probs=227.8
Q ss_pred CCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhh
Q 003696 354 VKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 432 (802)
Q Consensus 354 ~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~v 432 (802)
..+|++|.|.-+...+|++.++. +.+|..|.+.|+++|+|++||||||||||++|+++|..+|++|+.++.+++.+.|.
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 46899999999999999998887 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCC----cchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChh
Q 003696 433 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPA 508 (802)
Q Consensus 433 G~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~----~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~A 508 (802)
|++++.+|+.|..|+...||||||||||++++++.... ...+.||..|+.+||+|....+|-+|+|||+|+.|||+
T Consensus 208 GEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpa 287 (388)
T KOG0651|consen 208 GESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPA 287 (388)
T ss_pred ccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchh
Confidence 99999999999999999999999999999999884322 23478899999999999999999999999999999999
Q ss_pred hcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003696 509 LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 588 (802)
Q Consensus 509 LlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle 588 (802)
|+||||+|+.+++|+|+...|..|++.|.........+|.+.+.+.++||+|+|+++.|.+|-+.|.+.....+-.+|+.
T Consensus 288 LlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~ 367 (388)
T KOG0651|consen 288 LLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDFM 367 (388)
T ss_pred hcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHHHHH
Confidence 99999999999999999999999999999888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 003696 589 FAKDRI 594 (802)
Q Consensus 589 ~A~~ri 594 (802)
.++.++
T Consensus 368 k~vrk~ 373 (388)
T KOG0651|consen 368 KLVRKQ 373 (388)
T ss_pred HHHHHH
Confidence 888876
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1e-34 Score=331.11 Aligned_cols=263 Identities=33% Similarity=0.501 Sum_probs=217.0
Q ss_pred cccCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC-------
Q 003696 347 EVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------- 418 (802)
Q Consensus 347 ~~~~~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p------- 418 (802)
.+..+.+.++|+||.|++++++++++.+.. +.+|+.|...|.++|+|+|||||||||||++|+++|++++.+
T Consensus 171 l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~ 250 (512)
T TIGR03689 171 LVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGD 250 (512)
T ss_pred ceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCC
Confidence 344566788999999999999999998876 889999999999999999999999999999999999998654
Q ss_pred ---eeEeeccchhhhhhhhhHHHHHHHHHHHHhc----CCcEEEEcchhhhccccccCC--cchHHHHHHHHHHhccccc
Q 003696 419 ---FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWE--GHTKKTLHQLLVEMDGFEQ 489 (802)
Q Consensus 419 ---fi~is~se~~e~~vG~~~k~vr~lF~~Ar~~----aP~ILfIDEIDaLg~~r~~~~--~~~~~tLnqLL~eLDg~~~ 489 (802)
|+.++++++..+|+|.+++.++.+|..++.. .||||||||+|.++.+|+... ......+++||..||++..
T Consensus 251 ~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 251 KSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred ceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 6677888899999999999999999998764 699999999999998876432 2235678999999999988
Q ss_pred CCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccC-CCC---------CcccHHHHH-------
Q 003696 490 NEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-PLA---------DDVDVKAIA------- 552 (802)
Q Consensus 490 ~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~-~l~---------~dvdl~~LA------- 552 (802)
..+++||+|||+++.||+|++||||||++|+|++|+.++|.+||+.|+... ++. ...++..++
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~ 410 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHL 410 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999998652 221 111222222
Q ss_pred ----------------------hcCCCCCHHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHHHhcccccccccch
Q 003696 553 ----------------------RGTPGFNGADLANLVNIAAIKAAVD----GGEKLTATELEFAKDRILMGTERKTMFIS 606 (802)
Q Consensus 553 ----------------------~~t~G~SgaDL~nLvn~Aa~~Aa~~----~~~~It~edle~A~~ril~g~~~k~~~ls 606 (802)
..++.+||++|.++|.+|...|..+ +...|+++|+..|+..-....+.-+....
T Consensus 411 ~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~~~~ 490 (512)
T TIGR03689 411 YATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPNTTN 490 (512)
T ss_pred hhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCCCCC
Confidence 1245689999999999999888765 34689999999999887665554433334
Q ss_pred HHH
Q 003696 607 EES 609 (802)
Q Consensus 607 ~~~ 609 (802)
+++
T Consensus 491 ~~~ 493 (512)
T TIGR03689 491 PDD 493 (512)
T ss_pred HHH
Confidence 443
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-33 Score=315.03 Aligned_cols=241 Identities=39% Similarity=0.575 Sum_probs=226.5
Q ss_pred CCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhh
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 431 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~ 431 (802)
+..+ +++.|+......+++++.+ +.++..|...|.++|+|+|+|||||||||++++|+|++.++.++.++++++..+|
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4556 8999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhcC-CcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhc
Q 003696 432 VGVGARRVRSLFQAAKKKA-PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 510 (802)
Q Consensus 432 vG~~~k~vr~lF~~Ar~~a-P~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALl 510 (802)
.|++++.+|..|+.|.+++ |+||||||+|+++++|........++..||+..||+.....++|||++||+|+.||++++
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alR 338 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALR 338 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhh
Confidence 9999999999999999998 999999999999998876655567889999999999998899999999999999999999
Q ss_pred CCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003696 511 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFA 590 (802)
Q Consensus 511 RpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A 590 (802)
| ||||+.+.+..|+..+|.+|++.+.++.++.+++++..+|..|.||.|+||..+|+.|+..+.++ +++++..|
T Consensus 339 R-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~~~~A 412 (693)
T KOG0730|consen 339 R-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEIFQEA 412 (693)
T ss_pred c-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHHHHHH
Confidence 9 99999999999999999999999999999988899999999999999999999999999999887 88899988
Q ss_pred HHHHhccccc
Q 003696 591 KDRILMGTER 600 (802)
Q Consensus 591 ~~ril~g~~~ 600 (802)
...+.....+
T Consensus 413 ~~~i~psa~R 422 (693)
T KOG0730|consen 413 LMGIRPSALR 422 (693)
T ss_pred HhcCCchhhh
Confidence 8777554433
No 34
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=6.5e-32 Score=293.66 Aligned_cols=260 Identities=18% Similarity=0.214 Sum_probs=198.3
Q ss_pred CCCCcccc-cCCHHHHHHHHHHHHHh-cCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhh
Q 003696 353 NVKTFKDV-KGCDDAKQELVEVVEYL-KNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 430 (802)
Q Consensus 353 ~~~tFdDV-iG~deaK~eL~eiV~~L-k~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~ 430 (802)
...+|+++ .|+--++.-+..++..+ ++- ....|.++|++++||||||||||++|+++|+++|++|+.++++++.++
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~--l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNF--LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhh--hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 34578888 66666666665554332 221 122678999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHh-----cCCcEEEEcchhhhccccccCCcch-HHHH-HHHHHHhccc------------ccCC
Q 003696 431 FVGVGARRVRSLFQAAKK-----KAPCIIFIDEIDAVGSTRKQWEGHT-KKTL-HQLLVEMDGF------------EQNE 491 (802)
Q Consensus 431 ~vG~~~k~vr~lF~~Ar~-----~aP~ILfIDEIDaLg~~r~~~~~~~-~~tL-nqLL~eLDg~------------~~~~ 491 (802)
|+|++++.+|++|..|+. .+||||||||||+++++++..+... .+.+ .+||.+||+. ....
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 999999999999999975 4699999999999999886443332 3444 6899988863 3456
Q ss_pred CEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCC----CCHHHHHHHH
Q 003696 492 GIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPG----FNGADLANLV 567 (802)
Q Consensus 492 ~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G----~SgaDL~nLv 567 (802)
+|+||+|||+|+.||++|+||||||+.+ ..|+.++|.+||+.++++..+. ..|+..|+..++| |.|+--..+.
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~y 344 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVY 344 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHH
Confidence 7999999999999999999999999975 5899999999999999988765 6889999999987 4566555555
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHHhcccccccccchHHHHHhHHHhhhhhHHHHH
Q 003696 568 NIAAIKAAVDGGEKLTATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAF 625 (802)
Q Consensus 568 n~Aa~~Aa~~~~~~It~edle~A~~ril~g~~~k~~~ls~~~~~~vA~HEaGHAlva~ 625 (802)
.++...-..+ --++..-.+++...++ ...+......+.+.-|+||.++..
T Consensus 345 d~~v~~~i~~-------~g~~~~~~~l~~~~~~-~p~f~~~~~t~~~l~~~g~~l~~e 394 (413)
T PLN00020 345 DDEVRKWIAE-------VGVENLGKKLVNSKKG-PPTFEPPKMTLEKLLEYGNMLVRE 394 (413)
T ss_pred HHHHHHHHHH-------hhHHHHHHHHhcCCCC-CCCCCCCCCCHHHHHHHHHHHHHH
Confidence 5544332221 1233333344443333 334555556677888999999864
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.2e-31 Score=321.04 Aligned_cols=245 Identities=45% Similarity=0.690 Sum_probs=223.7
Q ss_pred CCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhh
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 431 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~ 431 (802)
+.++|+||+|.+++++.+++++.+ +++|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++...+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 557999999999999999999887 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCc-chHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhc
Q 003696 432 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 510 (802)
Q Consensus 432 vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~-~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALl 510 (802)
.|...+.++.+|+.+....|+||||||||.+..+++...+ .....+++|+..|+++..+..++||++||.++.||++++
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~ 332 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALR 332 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHh
Confidence 9999999999999999999999999999999887765432 346788999999999988889999999999999999999
Q ss_pred CCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC------------
Q 003696 511 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG------------ 578 (802)
Q Consensus 511 RpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~------------ 578 (802)
|+|||++.+.++.|+.++|.+||+.+.+...+..++++..+++.+.||+++|+..+++.|+..+.++.
T Consensus 333 r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~ 412 (733)
T TIGR01243 333 RPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEE 412 (733)
T ss_pred CchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 99999999999999999999999999998888889999999999999999999999999998876642
Q ss_pred -------CCccCHHHHHHHHHHHhcc
Q 003696 579 -------GEKLTATELEFAKDRILMG 597 (802)
Q Consensus 579 -------~~~It~edle~A~~ril~g 597 (802)
...++.+|+..|+..+...
T Consensus 413 i~~~~~~~~~v~~~df~~Al~~v~ps 438 (733)
T TIGR01243 413 IPAEVLKELKVTMKDFMEALKMVEPS 438 (733)
T ss_pred ccchhcccccccHHHHHHHHhhcccc
Confidence 1247888999998876543
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-31 Score=317.55 Aligned_cols=250 Identities=35% Similarity=0.558 Sum_probs=221.7
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc-----CCCeeEeec
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAG 424 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea-----g~pfi~is~ 424 (802)
.+..++|++|.|.+.++++|+|+|.+ |..|+.|.++++.+|+||||+||||||||+.|+|+|..+ .+.|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 34567899999999999999999888 899999999999999999999999999999999999987 477888999
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCc-chHHHHHHHHHHhcccccCCCEEEEeecCCCC
Q 003696 425 SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (802)
Q Consensus 425 se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~-~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe 503 (802)
.+..++|+|+.+..++.+|+.|++..|.|||+||||.+...|...+. ........||..|||+..++.|+||+|||+|+
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpd 417 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPD 417 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcc
Confidence 99999999999999999999999999999999999999998865543 34567788999999999999999999999999
Q ss_pred CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC--
Q 003696 504 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGE-- 580 (802)
Q Consensus 504 ~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~-- 580 (802)
.+|+||+||||||+.++|++|+.+.|.+|+..|.++..-. ...-+..+|+.|.||-|+||+.+|.+|++.+.++.-.
T Consensus 418 a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~ 497 (1080)
T KOG0732|consen 418 AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQI 497 (1080)
T ss_pred ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCee
Confidence 9999999999999999999999999999999998876533 2333688999999999999999999999999876432
Q ss_pred --------------ccCHHHHHHHHHHHhccccc
Q 003696 581 --------------KLTATELEFAKDRILMGTER 600 (802)
Q Consensus 581 --------------~It~edle~A~~ril~g~~~ 600 (802)
.|...||-.|..++.....+
T Consensus 498 y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 498 YSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred ecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 36667777777777655444
No 37
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-31 Score=296.05 Aligned_cols=244 Identities=34% Similarity=0.480 Sum_probs=207.8
Q ss_pred CCCCccc--ccCCHHHHHHHHH--HHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCC-CeeEeeccch
Q 003696 353 NVKTFKD--VKGCDDAKQELVE--VVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-PFFYRAGSEF 427 (802)
Q Consensus 353 ~~~tFdD--ViG~deaK~eL~e--iV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~-pfi~is~se~ 427 (802)
|...|++ |.|.+.-...+-+ +...+-.|+.-.++|.+--||+|||||||||||++||.|..-++. +--.+++.++
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 3456777 5676654433322 333366788888999999999999999999999999999998864 5567899999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhc--------CCcEEEEcchhhhccccccCC---cchHHHHHHHHHHhcccccCCCEEEE
Q 003696 428 EEMFVGVGARRVRSLFQAAKKK--------APCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILM 496 (802)
Q Consensus 428 ~e~~vG~~~k~vr~lF~~Ar~~--------aP~ILfIDEIDaLg~~r~~~~---~~~~~tLnqLL~eLDg~~~~~~VIVI 496 (802)
..+|+|++++++|++|..|... .-.||++||||+++.+|++.. +....++||||..|||.++=.+++||
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVI 373 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVI 373 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEE
Confidence 9999999999999999988541 124999999999999998654 44689999999999999999999999
Q ss_pred eecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccC----CCCCcccHHHHHhcCCCCCHHHHHHHHHHHHH
Q 003696 497 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK----PLADDVDVKAIARGTPGFNGADLANLVNIAAI 572 (802)
Q Consensus 497 aATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~----~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~ 572 (802)
+-||+.+.||.||+|||||..++++.+||+.+|.+||+.|.+.. .+..|+|+.+||+.|..||||+|+.+|+.|..
T Consensus 374 GMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S 453 (744)
T KOG0741|consen 374 GMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQS 453 (744)
T ss_pred eccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998654 46689999999999999999999999999988
Q ss_pred HHHHhC---------------CCccCHHHHHHHHHHHhc
Q 003696 573 KAAVDG---------------GEKLTATELEFAKDRILM 596 (802)
Q Consensus 573 ~Aa~~~---------------~~~It~edle~A~~ril~ 596 (802)
.|..+. .-.|+++||..|++.+.+
T Consensus 454 ~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkP 492 (744)
T KOG0741|consen 454 FAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKP 492 (744)
T ss_pred HHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCc
Confidence 776552 125889999999997643
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8e-31 Score=290.78 Aligned_cols=246 Identities=35% Similarity=0.560 Sum_probs=210.7
Q ss_pred ccccCCCCCCCcccccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeec
Q 003696 346 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 424 (802)
Q Consensus 346 ~~~~~~~~~~tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~ 424 (802)
+++....+.+.|+|+.|++.+|+.+.+.+.+ +..|+.|..+. .+++|+||.||||||||+|++|||.|.+..|+.+++
T Consensus 141 ~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSa 219 (428)
T KOG0740|consen 141 NEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISA 219 (428)
T ss_pred HHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccH
Confidence 4455556678999999999999999999988 66788887644 356799999999999999999999999999999999
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCC-cchHHHHHHHHHHhcccc--cCCCEEEEeecCC
Q 003696 425 SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFE--QNEGIILMAATNL 501 (802)
Q Consensus 425 se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~-~~~~~tLnqLL~eLDg~~--~~~~VIVIaATN~ 501 (802)
+++..+|+|.+++.++.+|.-|+...|+|+||||+|.+..+|.... ....+...++|..+++.. .+.+|+||||||+
T Consensus 220 ssLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 220 SSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred HHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 9999999999999999999999999999999999999999885543 345677888888888764 3457999999999
Q ss_pred CCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCC-CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC-
Q 003696 502 PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPL-ADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG- 579 (802)
Q Consensus 502 pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l-~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~- 579 (802)
|+.+|.+++| ||.++++||+||.+.|..+|+..+.+.+. ..+.|+..|++.|+|||+.||.++|.+|++.-.+...
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 9999999999 99999999999999999999999987733 3567899999999999999999999999874443332
Q ss_pred ------------CccCHHHHHHHHHHH
Q 003696 580 ------------EKLTATELEFAKDRI 594 (802)
Q Consensus 580 ------------~~It~edle~A~~ri 594 (802)
..|+..|++.++..+
T Consensus 378 ~~~~~~~~~~~~r~i~~~df~~a~~~i 404 (428)
T KOG0740|consen 378 TTDLEFIDADKIRPITYPDFKNAFKNI 404 (428)
T ss_pred chhhhhcchhccCCCCcchHHHHHHhh
Confidence 235555666666554
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.87 E-value=3.3e-21 Score=207.46 Aligned_cols=223 Identities=21% Similarity=0.315 Sum_probs=166.2
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCC---ceEEEEccCCCcHHHHHHHHHHhc-------CCCeeEeeccc
Q 003696 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLP---KGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAGSE 426 (802)
Q Consensus 357 FdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~P---kgVLL~GPPGTGKT~LArALA~ea-------g~pfi~is~se 426 (802)
+++++|++++|+++++++.++..+..+...|...| .++||+||||||||++|+++|+.+ ..+++++++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 45899999999999999988777777777776554 358999999999999999999875 24699999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCC---
Q 003696 427 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD--- 503 (802)
Q Consensus 427 ~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe--- 503 (802)
+...|+|..+..++.+|+.+. ++||||||+|.+...++. .......++.|+..|+.. ..+++||++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~-~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~~~~ 175 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE-RDYGSEAIEILLQVMENQ--RDDLVVIFAGYKDRMDK 175 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc-cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHH
Confidence 999999988888888888764 469999999999654322 223467788888888853 35677888776422
Q ss_pred --CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC--Cccc---HHHHHhc--CCCC-CHHHHHHHHHHHHHH
Q 003696 504 --ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA--DDVD---VKAIARG--TPGF-NGADLANLVNIAAIK 573 (802)
Q Consensus 504 --~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~--~dvd---l~~LA~~--t~G~-SgaDL~nLvn~Aa~~ 573 (802)
.++|++.+ ||+.+|.|++++.+++.+|++.++++.... ++.. ...+.+. .+.+ ++++++++++.|...
T Consensus 176 ~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 176 FYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred HHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHH
Confidence 34688988 999999999999999999999999865433 2221 1222222 2334 489999999988765
Q ss_pred HHHh----CCCccCHHHH
Q 003696 574 AAVD----GGEKLTATEL 587 (802)
Q Consensus 574 Aa~~----~~~~It~edl 587 (802)
.+.+ +...++.+|+
T Consensus 254 ~~~r~~~~~~~~~~~~~l 271 (287)
T CHL00181 254 QANRIFESGGRVLTKADL 271 (287)
T ss_pred HHHHHHcCCCCCCCHHHH
Confidence 5443 2334455543
No 40
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.5e-21 Score=216.02 Aligned_cols=207 Identities=27% Similarity=0.371 Sum_probs=166.1
Q ss_pred CCCCCCcccccCCHHHHHHHHH-HHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh
Q 003696 351 EKNVKTFKDVKGCDDAKQELVE-VVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~e-iV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e 429 (802)
-..+.+|+.|+=..+.|+++.+ +.+|++..+-|.+.|...-+|.|||||||||||+++.|+|+.++..++-++.++...
T Consensus 194 f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~ 273 (457)
T KOG0743|consen 194 FPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL 273 (457)
T ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC
Confidence 3344799999999999999887 777789999999999999999999999999999999999999999999888766543
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCC--------cchHHHHHHHHHHhcccccCC--CEEEEeec
Q 003696 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE--------GHTKKTLHQLLVEMDGFEQNE--GIILMAAT 499 (802)
Q Consensus 430 ~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~--------~~~~~tLnqLL~eLDg~~~~~--~VIVIaAT 499 (802)
. .. ++.+...+... +||+|++||+-...++... ....-++..||+.+||....+ --|||.||
T Consensus 274 n-----~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 274 D-----SD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred c-----HH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEec
Confidence 2 23 77777666555 6999999998754332211 123468999999999998777 57888999
Q ss_pred CCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCC--CCHHHHHHHH
Q 003696 500 NLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPG--FNGADLANLV 567 (802)
Q Consensus 500 N~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G--~SgaDL~nLv 567 (802)
|+++.|||||+||||+|.+|+++.-+..+-+.+++.|+.... +..-...|.+...+ .|+||+...+
T Consensus 346 Nh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 346 NHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred CChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 999999999999999999999999999999999999997533 11123334433333 5999987654
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.87 E-value=5.1e-21 Score=202.81 Aligned_cols=213 Identities=21% Similarity=0.284 Sum_probs=159.7
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCC---ceEEEEccCCCcHHHHHHHHHHhc-------CCCeeEeecc
Q 003696 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLP---KGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAGS 425 (802)
Q Consensus 356 tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~P---kgVLL~GPPGTGKT~LArALA~ea-------g~pfi~is~s 425 (802)
.+++++|++++|+++++++.+..........|.+.+ .++||+||||||||++|+++|+.+ ..++++++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 478899999999999999998765555455565433 478999999999999999999864 2478899999
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCC--
Q 003696 426 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD-- 503 (802)
Q Consensus 426 e~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe-- 503 (802)
++...|+|.....++++|..+. ++||||||+|.|... .........++.|+..|+.. ...+++|++++..+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~--~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~~ 156 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG--GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDEMD 156 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC--CccchHHHHHHHHHHHHhcc--CCCEEEEecCCcchhH
Confidence 9999999999999999998764 469999999999642 11122456788899988864 34556665554322
Q ss_pred ---CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCC-cccHHHHHh---------cCCCCCHHHHHHHHHHH
Q 003696 504 ---ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIAR---------GTPGFNGADLANLVNIA 570 (802)
Q Consensus 504 ---~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~-dvdl~~LA~---------~t~G~SgaDL~nLvn~A 570 (802)
.++|++.+ ||+..|.++.++.+++.+|++.++......- +..+..++. .....+++.++|+++.|
T Consensus 157 ~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a 234 (261)
T TIGR02881 157 YFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKA 234 (261)
T ss_pred HHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 36788887 9999999999999999999999998654432 222333322 11234788999999988
Q ss_pred HHHHHHh
Q 003696 571 AIKAAVD 577 (802)
Q Consensus 571 a~~Aa~~ 577 (802)
....+.+
T Consensus 235 ~~~~~~r 241 (261)
T TIGR02881 235 IRRQAVR 241 (261)
T ss_pred HHHHHHH
Confidence 7665443
No 42
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.8e-21 Score=206.77 Aligned_cols=213 Identities=30% Similarity=0.459 Sum_probs=166.3
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhhh
Q 003696 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGV 434 (802)
Q Consensus 355 ~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG~ 434 (802)
..|++|+-....+..+..+...-.|..+ ...+-++||||||||||||++||-+|...|..+-.+.+.++.-. -..
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~q 426 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQ 426 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chH
Confidence 3599999999999999888766555443 33345799999999999999999999999999999988886442 223
Q ss_pred hHHHHHHHHHHHHhc-CCcEEEEcchhhhccccccC--CcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcC
Q 003696 435 GARRVRSLFQAAKKK-APCIIFIDEIDAVGSTRKQW--EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTR 511 (802)
Q Consensus 435 ~~k~vr~lF~~Ar~~-aP~ILfIDEIDaLg~~r~~~--~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlR 511 (802)
+...+.++|.-+++. ..-+|||||.|++...|+.. +...+.+||.||-.-- .++..++++.+||+|..||.++..
T Consensus 427 aVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D 504 (630)
T KOG0742|consen 427 AVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND 504 (630)
T ss_pred HHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh
Confidence 456788999999874 45699999999998877643 3345778888874322 345678889999999999999987
Q ss_pred CCccceEEEccCCCHHHHHHHHHHHhccCCCCC-----------------------c----ccHHHHHhcCCCCCHHHHH
Q 003696 512 PGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-----------------------D----VDVKAIARGTPGFNGADLA 564 (802)
Q Consensus 512 pGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~-----------------------d----vdl~~LA~~t~G~SgaDL~ 564 (802)
|||..|+||+|..++|..||..|+.+....+ . .-+.+.|+.|+||||++|.
T Consensus 505 --Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREia 582 (630)
T KOG0742|consen 505 --RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIA 582 (630)
T ss_pred --hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHH
Confidence 9999999999999999999999986532110 1 1156789999999999999
Q ss_pred HHHHHHHHHHHHhC
Q 003696 565 NLVNIAAIKAAVDG 578 (802)
Q Consensus 565 nLvn~Aa~~Aa~~~ 578 (802)
.|+ |...|...+
T Consensus 583 kLv--a~vQAavYg 594 (630)
T KOG0742|consen 583 KLV--ASVQAAVYG 594 (630)
T ss_pred HHH--HHHHHHHhc
Confidence 998 444444444
No 43
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=2.3e-21 Score=181.03 Aligned_cols=129 Identities=44% Similarity=0.721 Sum_probs=114.9
Q ss_pred EEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhhhhHHHHHHHHHHHHhcC-CcEEEEcchhhhccccc-cCCc
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKA-PCIIFIDEIDAVGSTRK-QWEG 471 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~a-P~ILfIDEIDaLg~~r~-~~~~ 471 (802)
|||+||||||||++|+++|+.++.+++.++++++...+.+...+.++++|..++... ||||||||+|.+..... ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 699999999999999999999999999999999998888999999999999999887 99999999999987762 2233
Q ss_pred chHHHHHHHHHHhcccccC-CCEEEEeecCCCCCCChhhcCCCccceEEEccC
Q 003696 472 HTKKTLHQLLVEMDGFEQN-EGIILMAATNLPDILDPALTRPGRFDRHIVVPN 523 (802)
Q Consensus 472 ~~~~tLnqLL~eLDg~~~~-~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~l 523 (802)
.....+++|+..++..... .+++||++||.++.++++++| +||++.|++++
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 4577889999999987665 569999999999999999998 89999999874
No 44
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=1.2e-20 Score=202.84 Aligned_cols=213 Identities=20% Similarity=0.256 Sum_probs=164.5
Q ss_pred cc-cccCCHHHHHHHHHHHHHhcCchhhhhcCCCC---CceEEEEccCCCcHHHHHHHHHHhcC-------CCeeEeecc
Q 003696 357 FK-DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKL---PKGILLTGAPGTGKTLLAKAIAGEAG-------VPFFYRAGS 425 (802)
Q Consensus 357 Fd-DViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~---PkgVLL~GPPGTGKT~LArALA~eag-------~pfi~is~s 425 (802)
.+ +++|++++|+++.+++.++..+..+...|... ..++||+||||||||++|+++|..+. .+|++++++
T Consensus 20 l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~ 99 (284)
T TIGR02880 20 LDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD 99 (284)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH
Confidence 44 69999999999999999988888888788764 34899999999999999999998762 379999999
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCC--C
Q 003696 426 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP--D 503 (802)
Q Consensus 426 e~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~p--e 503 (802)
++...+.|.....++++|+.+. +++|||||+|.+...++. .......++.|+..|+. ...+++||++++.. +
T Consensus 100 ~l~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~-~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~ 173 (284)
T TIGR02880 100 DLVGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE-RDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRMD 173 (284)
T ss_pred HHhHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc-cchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHH
Confidence 9988899988888888888774 369999999999643321 22346677888988874 34567888887643 2
Q ss_pred ---CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCC-cccHHHHHhc-------CCCCCHHHHHHHHHHHHH
Q 003696 504 ---ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIARG-------TPGFNGADLANLVNIAAI 572 (802)
Q Consensus 504 ---~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~-dvdl~~LA~~-------t~G~SgaDL~nLvn~Aa~ 572 (802)
.++|++.+ ||+..|+||+++.+++..|+++++++....- +..+..+... ..-.++++++|+++.+..
T Consensus 174 ~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 174 SFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 35889998 9999999999999999999999998754331 1123333332 112368999999998877
Q ss_pred HHHHh
Q 003696 573 KAAVD 577 (802)
Q Consensus 573 ~Aa~~ 577 (802)
..+.+
T Consensus 252 ~~~~r 256 (284)
T TIGR02880 252 RQANR 256 (284)
T ss_pred HHHHH
Confidence 66543
No 45
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.83 E-value=3.3e-20 Score=215.08 Aligned_cols=265 Identities=20% Similarity=0.306 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCcccccccccCCCCCCCcccccCCHHHHHHHHHHHHHh
Q 003696 298 ISTILFTVAVGLVWLMGAAALQKYIGSLGGIGTSGVGSSSSYAPKELNKEVMPEKNVKTFKDVKGCDDAKQELVEVVEYL 377 (802)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~tFdDViG~deaK~eL~eiV~~L 377 (802)
+..++|.+++|+|||...+..+..................++....+..++.....+.+|+|++|++++++.|+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~-- 82 (531)
T TIGR02902 5 IVQIIFLIIIGLYFFNALKNQQTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALC-- 82 (531)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHh--
Confidence 345577888899888776654322111111111111111222233455677777788899999999999888875431
Q ss_pred cCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc----------CCCeeEeeccch--hh-----hhhhhhHHH--
Q 003696 378 KNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRAGSEF--EE-----MFVGVGARR-- 438 (802)
Q Consensus 378 k~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea----------g~pfi~is~se~--~e-----~~vG~~~k~-- 438 (802)
...|.++||+||||||||++|++++..+ +.+|+.++|... .+ ...+....-
T Consensus 83 ----------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~ 152 (531)
T TIGR02902 83 ----------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIY 152 (531)
T ss_pred ----------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchh
Confidence 2235689999999999999999998643 468999998631 11 111110000
Q ss_pred --------------HHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc----------------
Q 003696 439 --------------VRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------------- 488 (802)
Q Consensus 439 --------------vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~---------------- 488 (802)
-...+.. ....+|||||||.|. ...++.||..|+.-.
T Consensus 153 ~~~~~~g~~g~~~~~~G~l~~---a~gG~L~IdEI~~L~----------~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~ 219 (531)
T TIGR02902 153 QGAGPLGIAGIPQPKPGAVTR---AHGGVLFIDEIGELH----------PVQMNKLLKVLEDRKVFLDSAYYNSENPNIP 219 (531)
T ss_pred ccccccccCCcccccCchhhc---cCCcEEEEechhhCC----------HHHHHHHHHHHHhCeeeeccccccccCcccc
Confidence 0011222 223699999999993 456677776664310
Q ss_pred ----------cCCC-EEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCC
Q 003696 489 ----------QNEG-IILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTP 556 (802)
Q Consensus 489 ----------~~~~-VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~ 556 (802)
.... .++++|||.|+.|++++++ |+. .+.+++++.+++.+|++..+++.... ++..++.|++.+.
T Consensus 220 ~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~ 296 (531)
T TIGR02902 220 SHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS 296 (531)
T ss_pred cchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh
Confidence 0112 3445666779999999998 874 67888889999999999999876544 3334666776653
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003696 557 GFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKD 592 (802)
Q Consensus 557 G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~ 592 (802)
+++++.++++.|+..|..+++..|+.+|+++++.
T Consensus 297 --n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 297 --NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred --hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 8999999999999999888888999999999975
No 46
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.82 E-value=6.6e-19 Score=189.55 Aligned_cols=211 Identities=24% Similarity=0.266 Sum_probs=157.8
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhhh
Q 003696 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGV 434 (802)
Q Consensus 355 ~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG~ 434 (802)
.+|+|++|+++.++.|..++...+.. ...+.+++|+||||||||++|+++|++++.++..++++....
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 37999999999999998887643321 234568999999999999999999999999887766543321
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc----------------cCCCEEEEee
Q 003696 435 GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE----------------QNEGIILMAA 498 (802)
Q Consensus 435 ~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~----------------~~~~VIVIaA 498 (802)
...+...+... ..+.+|||||+|.+... ....|+..|+.+. ...++++|++
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~----------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~ 135 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPA----------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHH----------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEe
Confidence 11222333322 34679999999999431 2233444443322 1134789999
Q ss_pred cCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 003696 499 TNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 577 (802)
Q Consensus 499 TN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~ 577 (802)
||++..+++++++ ||...+.+++|+.+++.++++..+...... ++..+..|++.+.| +++.+.++++.+...|...
T Consensus 136 t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~~~ 212 (305)
T TIGR00635 136 TTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFAQVR 212 (305)
T ss_pred cCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHHc
Confidence 9999999999987 998899999999999999999988765443 33447788998887 5688889999887777777
Q ss_pred CCCccCHHHHHHHHHH
Q 003696 578 GGEKLTATELEFAKDR 593 (802)
Q Consensus 578 ~~~~It~edle~A~~r 593 (802)
+...|+.+++..+++.
T Consensus 213 ~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 213 GQKIINRDIALKALEM 228 (305)
T ss_pred CCCCcCHHHHHHHHHH
Confidence 7778999999999887
No 47
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.82 E-value=7.2e-19 Score=192.25 Aligned_cols=216 Identities=25% Similarity=0.310 Sum_probs=163.7
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhh
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 430 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~ 430 (802)
+..+.+|+|++|+++.++.|..++...+.+ ...+.++|||||||||||++|+++|++++..+..++++.+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~- 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK- 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC-
Confidence 334568999999999999999888654322 235678999999999999999999999999988877664422
Q ss_pred hhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc----------------cCCCEE
Q 003696 431 FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE----------------QNEGII 494 (802)
Q Consensus 431 ~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~----------------~~~~VI 494 (802)
...+..++... ..++||||||||.+... .... |...|+.+. .-.++.
T Consensus 90 -----~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-------~~e~---l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~ 152 (328)
T PRK00080 90 -----PGDLAAILTNL--EEGDVLFIDEIHRLSPV-------VEEI---LYPAMEDFRLDIMIGKGPAARSIRLDLPPFT 152 (328)
T ss_pred -----hHHHHHHHHhc--ccCCEEEEecHhhcchH-------HHHH---HHHHHHhcceeeeeccCccccceeecCCCce
Confidence 12334444433 34689999999999431 1222 333343321 012478
Q ss_pred EEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 003696 495 LMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIK 573 (802)
Q Consensus 495 VIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~ 573 (802)
+|++||++..++++|++ ||...+.++.|+.+++.+|++..+...... ++..+..|++.+.| +++.+.++++.+...
T Consensus 153 li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~~ 229 (328)
T PRK00080 153 LIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRDF 229 (328)
T ss_pred EEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHHH
Confidence 89999999999999987 999999999999999999999988776554 33347889988887 568899999988877
Q ss_pred HHHhCCCccCHHHHHHHHHHH
Q 003696 574 AAVDGGEKLTATELEFAKDRI 594 (802)
Q Consensus 574 Aa~~~~~~It~edle~A~~ri 594 (802)
+...+...|+.+++..+++.+
T Consensus 230 a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 230 AQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHcCCCCCCHHHHHHHHHHh
Confidence 877777789999999998764
No 48
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.81 E-value=6.2e-19 Score=182.04 Aligned_cols=191 Identities=26% Similarity=0.328 Sum_probs=132.0
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhh
Q 003696 352 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 431 (802)
Q Consensus 352 ~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~ 431 (802)
-.+.+|+|++|+++++..++-+++..+.. .....++|||||||+||||||+.+|++++.+|...+++.+..
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-- 88 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-- 88 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--
Confidence 34569999999999999998887754332 122338999999999999999999999999999999865432
Q ss_pred hhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccccc-----C-----------CCEEE
Q 003696 432 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ-----N-----------EGIIL 495 (802)
Q Consensus 432 vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~-----~-----------~~VIV 495 (802)
...+..++...+ ...||||||||.+. ......|+..|+.+.- . .++.+
T Consensus 89 ----~~dl~~il~~l~--~~~ILFIDEIHRln----------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 89 ----AGDLAAILTNLK--EGDILFIDEIHRLN----------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp ----CHHHHHHHHT----TT-EEEECTCCC------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred ----HHHHHHHHHhcC--CCcEEEEechhhcc----------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 122334444433 34699999999993 3455567777776521 1 24789
Q ss_pred EeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHH
Q 003696 496 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIA 570 (802)
Q Consensus 496 IaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~A 570 (802)
|+||++...|.+.|+. ||.....+..++.++..+|++......... ++.....||+++.| +++-..++++++
T Consensus 153 igATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp EEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred eeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 9999999999999987 999989999999999999999887766655 33347889999987 788777777654
No 49
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=5.8e-18 Score=195.33 Aligned_cols=232 Identities=27% Similarity=0.399 Sum_probs=181.8
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhhhhH
Q 003696 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGA 436 (802)
Q Consensus 357 FdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG~~~ 436 (802)
|-...+.+.... +++..+.-+..-...+.+..-.+||+|+||||||++++++|.++|.+++.++|.++...-.+..+
T Consensus 400 ~~~~~~~~~~~~---~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~e 476 (953)
T KOG0736|consen 400 SLSPPGLEAKVL---ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTE 476 (953)
T ss_pred cCCCccchHHHH---HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhH
Confidence 444455555433 44444433322222344555589999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHhcCCcEEEEcchhhhccccccCCc-chHHHHHHHHHHhcccc-cCCCEEEEeecCCCCCCChhhcCCCc
Q 003696 437 RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFE-QNEGIILMAATNLPDILDPALTRPGR 514 (802)
Q Consensus 437 k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~-~~~~tLnqLL~eLDg~~-~~~~VIVIaATN~pe~LD~ALlRpGR 514 (802)
..+...|..|+...|+|||+-++|.++..+++... ...+.+++++. .|.+. ...+++||++|+..+.|++.+++ -
T Consensus 477 tkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~ 553 (953)
T KOG0736|consen 477 TKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--L 553 (953)
T ss_pred HHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--h
Confidence 99999999999999999999999999865544221 12344555554 34443 55679999999999999999998 6
Q ss_pred cceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHH---HHhCC------------
Q 003696 515 FDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKA---AVDGG------------ 579 (802)
Q Consensus 515 Fdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~A---a~~~~------------ 579 (802)
|-..|.++.|+.++|.+||+.|+....+..++.+..++++|+||+.+|+..++..+-..+ ..+..
T Consensus 554 f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~ 633 (953)
T KOG0736|consen 554 FLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGE 633 (953)
T ss_pred hhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccc
Confidence 777899999999999999999999999999999999999999999999999987652211 11111
Q ss_pred -----CccCHHHHHHHHHHH
Q 003696 580 -----EKLTATELEFAKDRI 594 (802)
Q Consensus 580 -----~~It~edle~A~~ri 594 (802)
..++++||..|+.++
T Consensus 634 ~~~~~~~l~~edf~kals~~ 653 (953)
T KOG0736|consen 634 LCAAGFLLTEEDFDKALSRL 653 (953)
T ss_pred cccccceecHHHHHHHHHHH
Confidence 468999999999975
No 50
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.4e-17 Score=191.63 Aligned_cols=218 Identities=44% Similarity=0.634 Sum_probs=197.5
Q ss_pred hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhhhhHHHHHHHHHHHHhcCCcEEEE
Q 003696 377 LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFI 456 (802)
Q Consensus 377 Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfI 456 (802)
+..+..+..++..+|++++++||||||||++++++|.+ +..++.+++.+....+.|......+.+|..++...|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45667788899999999999999999999999999999 77678889999999999999999999999999999999999
Q ss_pred cchhhhccccccC-CcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHH
Q 003696 457 DEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILEL 535 (802)
Q Consensus 457 DEIDaLg~~r~~~-~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~ 535 (802)
||+|.+...+... .........+++..|+++.... +++++.||++..+|+++++||||++.+.+..|+...+.+|++.
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~ 161 (494)
T COG0464 83 DEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQI 161 (494)
T ss_pred chhhhcccCccccccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHH
Confidence 9999999888762 3345788899999999998444 9999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC------CCccCHHHHHHHHHHHhc
Q 003696 536 YLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG------GEKLTATELEFAKDRILM 596 (802)
Q Consensus 536 ~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~------~~~It~edle~A~~ril~ 596 (802)
+........+.+...++..+.|++++++..++..+...+.++. ...++.+++..+++++..
T Consensus 162 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 162 HTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 9988888888999999999999999999999999999888875 345788999999998754
No 51
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=1.3e-17 Score=189.15 Aligned_cols=205 Identities=20% Similarity=0.248 Sum_probs=155.0
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC-----------
Q 003696 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP----------- 418 (802)
Q Consensus 350 ~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p----------- 418 (802)
.+..+.+|+||+|++.+...|+..+. ..++|+.+||+||||||||++|+++|+.+++.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~-----------~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALK-----------SGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 35567799999999999998888776 35577789999999999999999999998763
Q ss_pred -------------eeEeeccchhhhhhhhhHHHHHHHHHHHH----hcCCcEEEEcchhhhccccccCCcchHHHHHHHH
Q 003696 419 -------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 481 (802)
Q Consensus 419 -------------fi~is~se~~e~~vG~~~k~vr~lF~~Ar----~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL 481 (802)
++.+++. ...+...+|++.+.+. .....|+||||+|.+ ....+|.||
T Consensus 79 ~sC~~i~~g~~~dviEIdaa------s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L----------s~~A~NALL 142 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAA------SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML----------TDQSFNALL 142 (484)
T ss_pred cHHHHHHccCCccceeechh------hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc----------CHHHHHHHH
Confidence 2222211 1123345666655543 234569999999999 356889999
Q ss_pred HHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCH
Q 003696 482 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNG 560 (802)
Q Consensus 482 ~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~Sg 560 (802)
..|+. ....+++|.+|+.++.|.+++++ |+ .++.|..++.++..++++..+...... ++..+..|++...| +.
T Consensus 143 KtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~ 216 (484)
T PRK14956 143 KTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SV 216 (484)
T ss_pred HHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hH
Confidence 99984 45678888899999999999988 87 568899999999999999988766544 44557888888776 78
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003696 561 ADLANLVNIAAIKAAVDGGEKLTATELEFAK 591 (802)
Q Consensus 561 aDL~nLvn~Aa~~Aa~~~~~~It~edle~A~ 591 (802)
++..++++++... ....||.+++...+
T Consensus 217 RdAL~lLeq~i~~----~~~~it~~~V~~~l 243 (484)
T PRK14956 217 RDMLSFMEQAIVF----TDSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHHHHh----CCCCcCHHHHHHHh
Confidence 8888888876543 23468888886554
No 52
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.77 E-value=2.2e-17 Score=180.73 Aligned_cols=203 Identities=31% Similarity=0.410 Sum_probs=143.7
Q ss_pred CCCCcccccCCHHHHHH---HHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh
Q 003696 353 NVKTFKDVKGCDDAKQE---LVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (802)
Q Consensus 353 ~~~tFdDViG~deaK~e---L~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e 429 (802)
.+.+|+|++|++....+ |..+++ .+.+ .+++||||||||||++|+.||+..+.+|..+|+-
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~-----------~~~l-~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv---- 82 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVE-----------AGHL-HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV---- 82 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHh-----------cCCC-ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc----
Confidence 45689999999987533 333333 2333 3899999999999999999999999999999873
Q ss_pred hhhhhhHHHHHHHHHHHHhcC----CcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecC--CCC
Q 003696 430 MFVGVGARRVRSLFQAAKKKA----PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN--LPD 503 (802)
Q Consensus 430 ~~vG~~~k~vr~lF~~Ar~~a----P~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN--~pe 503 (802)
-.+.+.++++++.|++.. ..||||||||.+. +..+..||-.|+ ++.|++||||. ..-
T Consensus 83 ---~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn----------K~QQD~lLp~vE----~G~iilIGATTENPsF 145 (436)
T COG2256 83 ---TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFN----------KAQQDALLPHVE----NGTIILIGATTENPSF 145 (436)
T ss_pred ---cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC----------hhhhhhhhhhhc----CCeEEEEeccCCCCCe
Confidence 345678999999996532 4799999999993 334556776665 56788888773 345
Q ss_pred CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc--CCCC------CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 003696 504 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD--KPLA------DDVDVKAIARGTPGFNGADLANLVNIAAIKAA 575 (802)
Q Consensus 504 ~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~--~~l~------~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa 575 (802)
.|.+||++ |. +++.+.+.+.++...+++..+.. ..+. ++..+..++..+.| |.+.++|..-+.+.
T Consensus 146 ~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~LE~~~~ 218 (436)
T COG2256 146 ELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNLLELAAL 218 (436)
T ss_pred eecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHHHHHHHH
Confidence 89999998 66 67889999999999999984432 2222 23346677776655 66666654433332
Q ss_pred HhC-CCccCHHHHHHHHHHHh
Q 003696 576 VDG-GEKLTATELEFAKDRIL 595 (802)
Q Consensus 576 ~~~-~~~It~edle~A~~ril 595 (802)
... .+.++.+++++.+.+..
T Consensus 219 ~~~~~~~~~~~~l~~~l~~~~ 239 (436)
T COG2256 219 SAEPDEVLILELLEEILQRRS 239 (436)
T ss_pred hcCCCcccCHHHHHHHHhhhh
Confidence 222 12445788887777643
No 53
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=9.7e-18 Score=194.65 Aligned_cols=202 Identities=17% Similarity=0.254 Sum_probs=152.5
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC------------
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p------------ 418 (802)
++.+.+|+||+|++.+++.|++.+. ..++++.+||+||+|||||++|+.+|+.+++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~-----------~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALE-----------QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHH-----------hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 4566799999999999999988886 45678899999999999999999999998761
Q ss_pred -----------------eeEeeccchhhhhhhhhHHHHHHHHHHHH----hcCCcEEEEcchhhhccccccCCcchHHHH
Q 003696 419 -----------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTL 477 (802)
Q Consensus 419 -----------------fi~is~se~~e~~vG~~~k~vr~lF~~Ar----~~aP~ILfIDEIDaLg~~r~~~~~~~~~tL 477 (802)
++.++..+ ..+.+.+|++.+.+. .....|+||||+|.| +....
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L----------s~~Aa 141 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML----------TNHAF 141 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc----------CHHHH
Confidence 12222211 123455666666543 234569999999999 34678
Q ss_pred HHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCC-cccHHHHHhcCC
Q 003696 478 HQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIARGTP 556 (802)
Q Consensus 478 nqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~-dvdl~~LA~~t~ 556 (802)
|.||+.|+. ...++++|.+||.++.|.+.+++ |+ .++.|..++.++..+.|+.++.+..+.. +..+..|++.+.
T Consensus 142 NALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~ 216 (700)
T PRK12323 142 NAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQ 216 (700)
T ss_pred HHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 999999985 45567888889999999999987 87 6889999999999999998887655543 334677888776
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 003696 557 GFNGADLANLVNIAAIKAAVDGGEKLTATELEF 589 (802)
Q Consensus 557 G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~ 589 (802)
| +.++..++++++... +...|+.+++..
T Consensus 217 G-s~RdALsLLdQaia~----~~~~It~~~V~~ 244 (700)
T PRK12323 217 G-SMRDALSLTDQAIAY----SAGNVSEEAVRG 244 (700)
T ss_pred C-CHHHHHHHHHHHHHh----ccCCcCHHHHHH
Confidence 5 888988888876542 334576665543
No 54
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.76 E-value=1.3e-17 Score=200.34 Aligned_cols=223 Identities=18% Similarity=0.272 Sum_probs=164.8
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc----------CCCeeEe
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYR 422 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea----------g~pfi~i 422 (802)
...++++++|.++....+.+++. . +...++||+||||||||++|+++|.++ +..++.+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~---~---------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC---R---------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 34579999999988776554442 2 233589999999999999999999987 6778898
Q ss_pred eccchh--hhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecC
Q 003696 423 AGSEFE--EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (802)
Q Consensus 423 s~se~~--e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN 500 (802)
+++.+. ..|.|..+++++.+|+.++...|+||||||||.+.+.+...++ .....+.|+..+. ++.+.+|++||
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~-~~~~~~~L~~~l~----~g~i~~IgaTt 319 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG-SMDASNLLKPALS----SGKLRCIGSTT 319 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc-cHHHHHHHHHHHh----CCCeEEEEecC
Confidence 888886 4688999999999999998888999999999999765432222 1223344444443 56799999999
Q ss_pred CCC-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccC----CC-CCcccHHHHHhcCCCCC-----HHHHHH
Q 003696 501 LPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK----PL-ADDVDVKAIARGTPGFN-----GADLAN 565 (802)
Q Consensus 501 ~pe-----~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~----~l-~~dvdl~~LA~~t~G~S-----gaDL~n 565 (802)
..+ .+|+++.| ||. .|.++.|+.+++.+||+...... .. -.+..+..++..+..|- +.-...
T Consensus 320 ~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ 396 (731)
T TIGR02639 320 YEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAID 396 (731)
T ss_pred HHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHH
Confidence 743 57999999 996 79999999999999999766532 11 13445667776665442 444567
Q ss_pred HHHHHHHHHHHh----CCCccCHHHHHHHHHHHh
Q 003696 566 LVNIAAIKAAVD----GGEKLTATELEFAKDRIL 595 (802)
Q Consensus 566 Lvn~Aa~~Aa~~----~~~~It~edle~A~~ril 595 (802)
++++|+.....+ ....|+.+|+..++.+..
T Consensus 397 lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 397 VIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred HHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 777776544332 134699999999998853
No 55
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=6.4e-18 Score=180.00 Aligned_cols=233 Identities=21% Similarity=0.271 Sum_probs=173.3
Q ss_pred CcccccCCHHHHHHHHHHHHH-hcCchhhhh-cCCCCCceEEEEccCCCcHHHHHHHHHHhcC---------CCeeEeec
Q 003696 356 TFKDVKGCDDAKQELVEVVEY-LKNPSKFTR-LGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---------VPFFYRAG 424 (802)
Q Consensus 356 tFdDViG~deaK~eL~eiV~~-Lk~p~~~~~-lG~~~PkgVLL~GPPGTGKT~LArALA~eag---------~pfi~is~ 424 (802)
-|+.++--...|++|...+.. +.-.++-.+ --+...+-+||+||||||||+|++|+|..+. ..++++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 377788778889888775543 322222111 1123346799999999999999999999874 34789999
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHhc---CCc--EEEEcchhhhccccccC-----CcchHHHHHHHHHHhcccccCCCEE
Q 003696 425 SEFEEMFVGVGARRVRSLFQAAKKK---APC--IIFIDEIDAVGSTRKQW-----EGHTKKTLHQLLVEMDGFEQNEGII 494 (802)
Q Consensus 425 se~~e~~vG~~~k~vr~lF~~Ar~~---aP~--ILfIDEIDaLg~~r~~~-----~~~~~~tLnqLL~eLDg~~~~~~VI 494 (802)
..+.++|.+++.+.+..+|++.... ..+ .++|||+++++..|... ....-+++|.+|.+||.+....+|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 9999999999999999999987652 223 66799999998777422 2345689999999999999999999
Q ss_pred EEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCC-------------CCCccc-----HHHHHh-cC
Q 003696 495 LMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP-------------LADDVD-----VKAIAR-GT 555 (802)
Q Consensus 495 VIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~-------------l~~dvd-----l~~LA~-~t 555 (802)
+++|+|..+.||.|+.. |-|-+.++++|+...|.+|++..+.+.. ....+. ...++. .+
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 99999999999999998 9999999999999999999998875421 001111 122222 25
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003696 556 PGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKD 592 (802)
Q Consensus 556 ~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~ 592 (802)
.|.||+-|+.|=-.|. |..-....|+.+++-.|+-
T Consensus 378 ~gLSGRtlrkLP~Lah--a~y~~~~~v~~~~fl~al~ 412 (423)
T KOG0744|consen 378 VGLSGRTLRKLPLLAH--AEYFRTFTVDLSNFLLALL 412 (423)
T ss_pred cCCccchHhhhhHHHH--HhccCCCccChHHHHHHHH
Confidence 8999999998864333 3333345788888766654
No 56
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=3e-17 Score=172.90 Aligned_cols=214 Identities=24% Similarity=0.310 Sum_probs=169.3
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhh
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 432 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~v 432 (802)
.+.+|+|.+|++++|+.|+-.+...+.. ....-++|||||||.||||||..+|+|+|+.+-..++.-+...
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~-- 91 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP-- 91 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh--
Confidence 4568999999999999999888754432 3344599999999999999999999999999999998776542
Q ss_pred hhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc--------cC--------CCEEEE
Q 003696 433 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--------QN--------EGIILM 496 (802)
Q Consensus 433 G~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~--------~~--------~~VIVI 496 (802)
..+..++.....+ +||||||||.+... .+. -|.-.|+.|. .+ .++-+|
T Consensus 92 ----gDlaaiLt~Le~~--DVLFIDEIHrl~~~-------vEE---~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 92 ----GDLAAILTNLEEG--DVLFIDEIHRLSPA-------VEE---VLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred ----hhHHHHHhcCCcC--CeEEEehhhhcChh-------HHH---HhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 2333444443333 79999999999542 222 3344555542 11 247899
Q ss_pred eecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 003696 497 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAA 575 (802)
Q Consensus 497 aATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa 575 (802)
+||.+...|...|+. ||....++...+.++..+|++.......+. .+.....||+++.| +++=..+|+++..-.|.
T Consensus 156 GATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~ 232 (332)
T COG2255 156 GATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFAQ 232 (332)
T ss_pred eeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHHH
Confidence 999999999999987 999999999999999999999988766655 33347789999887 78888889999999999
Q ss_pred HhCCCccCHHHHHHHHHHH
Q 003696 576 VDGGEKLTATELEFAKDRI 594 (802)
Q Consensus 576 ~~~~~~It~edle~A~~ri 594 (802)
.++...|+.+-...|++..
T Consensus 233 V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 233 VKGDGDIDRDIADKALKML 251 (332)
T ss_pred HhcCCcccHHHHHHHHHHh
Confidence 9999999999888888865
No 57
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=3.2e-17 Score=192.40 Aligned_cols=201 Identities=19% Similarity=0.296 Sum_probs=152.0
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC------------
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p------------ 418 (802)
++.+.+|+||+|++++++.|+..+. ++++++.+||+||+|||||++|+++|+.+++.
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 4566799999999999999988875 45778889999999999999999999988752
Q ss_pred ------------eeEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHH
Q 003696 419 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 482 (802)
Q Consensus 419 ------------fi~is~se~~e~~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~ 482 (802)
+++++.+ ...+.+.++++++.+.. ....|+||||+|.|. ....|.||+
T Consensus 78 sCr~I~~G~h~DviEIDAa------s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT----------~~A~NALLK 141 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAA------SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT----------NHAFNAMLK 141 (830)
T ss_pred HHHHHhcCCCceEEEeccc------ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC----------HHHHHHHHH
Confidence 2222221 11234456777766542 234699999999993 467889999
Q ss_pred HhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHH
Q 003696 483 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 561 (802)
Q Consensus 483 eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~Sga 561 (802)
.|+. ...++++|.+||.++.|.+.|++ |+ .+|.|..++.++..++|+..+.+..+. ++..+..|++...| +.+
T Consensus 142 tLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smR 215 (830)
T PRK07003 142 TLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMR 215 (830)
T ss_pred HHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9985 34577888888999999999987 77 689999999999999999988766554 34457788888876 788
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003696 562 DLANLVNIAAIKAAVDGGEKLTATELE 588 (802)
Q Consensus 562 DL~nLvn~Aa~~Aa~~~~~~It~edle 588 (802)
+..+++.++..+ +...|+.+++.
T Consensus 216 dALsLLdQAia~----~~~~It~~~V~ 238 (830)
T PRK07003 216 DALSLTDQAIAY----SANEVTETAVS 238 (830)
T ss_pred HHHHHHHHHHHh----ccCCcCHHHHH
Confidence 888888776643 23456666554
No 58
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=6e-17 Score=185.24 Aligned_cols=205 Identities=19% Similarity=0.248 Sum_probs=149.5
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCC-------------
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV------------- 417 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~------------- 417 (802)
..++.+|+||+|++++++.|+..+. ..++|.++||+||||||||++|+++|+.+++
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~-----------~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALK-----------KNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 3456799999999999888887665 3457888999999999999999999998865
Q ss_pred -----------CeeEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHH
Q 003696 418 -----------PFFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 482 (802)
Q Consensus 418 -----------pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~ 482 (802)
.++.++++. ..+...+|.+.+.+.. ....||||||+|.+. ...++.||.
T Consensus 76 ~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt----------~~a~~~LLk 139 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT----------KEAFNALLK 139 (472)
T ss_pred HHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH----------HHHHHHHHH
Confidence 233443321 1223455665555442 234699999999993 356788888
Q ss_pred HhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHH
Q 003696 483 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 561 (802)
Q Consensus 483 eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~Sga 561 (802)
.++. ....+++|++|+.+..+++++.+ |+ ..+.+.+|+.++...+++..+...... ++..+..|++.+.| +.+
T Consensus 140 ~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR 213 (472)
T PRK14962 140 TLEE--PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLR 213 (472)
T ss_pred HHHh--CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHH
Confidence 8875 33467777777778899999987 77 589999999999999999988765433 34457888887654 566
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003696 562 DLANLVNIAAIKAAVDGGEKLTATELEFAKD 592 (802)
Q Consensus 562 DL~nLvn~Aa~~Aa~~~~~~It~edle~A~~ 592 (802)
++.+.++.+... .+ ..||.+++..++.
T Consensus 214 ~aln~Le~l~~~---~~-~~It~e~V~~~l~ 240 (472)
T PRK14962 214 DALTMLEQVWKF---SE-GKITLETVHEALG 240 (472)
T ss_pred HHHHHHHHHHHh---cC-CCCCHHHHHHHHc
Confidence 666666654432 22 3599999987764
No 59
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=7.1e-17 Score=179.23 Aligned_cols=211 Identities=17% Similarity=0.208 Sum_probs=151.1
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEe-------
Q 003696 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR------- 422 (802)
Q Consensus 350 ~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~i------- 422 (802)
.+..+.+|+||+|++.+++.|+..+. .++.|+.+||+||||||||++|+++|+++++.....
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~-----------~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLS-----------LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHH-----------cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 34566799999999999999888775 356788899999999999999999999986431100
Q ss_pred -ecc--------chhhh--hhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccc
Q 003696 423 -AGS--------EFEEM--FVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF 487 (802)
Q Consensus 423 -s~s--------e~~e~--~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~ 487 (802)
+|. ++.+. ........++++.+.+.. ....|+||||+|.+. ...++.||..++..
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~----------~~a~naLLk~lEe~ 146 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS----------RHSFNALLKTLEEP 146 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC----------HHHHHHHHHHHhcC
Confidence 000 11100 001223446666655432 224599999999993 45678899888853
Q ss_pred ccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHH
Q 003696 488 EQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANL 566 (802)
Q Consensus 488 ~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nL 566 (802)
...+.+|.+|+.++.+.+++++ |+ ..+.+++|+.++..++++..++..+.. ++..+..++..+.| +++++.++
T Consensus 147 --~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~~ 220 (363)
T PRK14961 147 --PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALNL 220 (363)
T ss_pred --CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 3456666677778889888876 77 678999999999999999988775543 34457778887765 78888888
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHH
Q 003696 567 VNIAAIKAAVDGGEKLTATELEFAK 591 (802)
Q Consensus 567 vn~Aa~~Aa~~~~~~It~edle~A~ 591 (802)
++.+... +...|+.+++..++
T Consensus 221 l~~~~~~----~~~~It~~~v~~~l 241 (363)
T PRK14961 221 LEHAINL----GKGNINIKNVTDML 241 (363)
T ss_pred HHHHHHh----cCCCCCHHHHHHHH
Confidence 8766533 45789999887665
No 60
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.74 E-value=2.5e-17 Score=187.61 Aligned_cols=299 Identities=20% Similarity=0.298 Sum_probs=185.8
Q ss_pred CCCCccccc-CCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc-----CCCeeEeeccc
Q 003696 353 NVKTFKDVK-GCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSE 426 (802)
Q Consensus 353 ~~~tFdDVi-G~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea-----g~pfi~is~se 426 (802)
+..+|++.+ |.. -...+..+..+..+|. ....+++||||||||||+|++++++++ +..++++++.+
T Consensus 117 ~~~tfd~fv~g~~-n~~a~~~~~~~~~~~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 117 PKYTFDNFVVGKS-NRLAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCcccccccCCC-cHHHHHHHHHHHhCcC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 445899954 533 2223333333333331 223469999999999999999999987 56788999998
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCC--
Q 003696 427 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI-- 504 (802)
Q Consensus 427 ~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~-- 504 (802)
|...+.........+-|.... ..+++|+|||+|.+.+++ .+...++..++....+...+||+++..|..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~--------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGKE--------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCCH--------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 877655443222222233222 246799999999996532 233445555554444445577777776655
Q ss_pred -CChhhcCCCccce--EEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 003696 505 -LDPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGE 580 (802)
Q Consensus 505 -LD~ALlRpGRFdr--~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~ 580 (802)
+++.+.+ ||.. .+.+.+||.++|.+|++..+....+. ++..++.||+.+.| +.++|..+++.....+...+ .
T Consensus 260 ~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~~-~ 335 (450)
T PRK00149 260 GLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLTG-K 335 (450)
T ss_pred HHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhhC-C
Confidence 6688876 8964 89999999999999999999865443 34447888888875 89999999998887776655 5
Q ss_pred ccCHHHHHHHHHHHhcccccccccchHHHHHhHHHhhhhhHHHHHhcCCCCcceEEEEecCCCcccceEeccCCCccccc
Q 003696 581 KLTATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVS 660 (802)
Q Consensus 581 ~It~edle~A~~ril~g~~~k~~~ls~~~~~~vA~HEaGHAlva~~~~~~~~v~kvtI~pRg~alG~~~~~p~~~~~~~t 660 (802)
.||.+.+++++..++.... +...+..-.+.+..++..-..-+ ... ..- +-...||.-+ +++-.+ .+.+|
T Consensus 336 ~it~~~~~~~l~~~~~~~~-~~~~~~~i~~~v~~~~~i~~~~l--~~~--~R~-~~~~~aR~ia----myl~~~-~~~~s 404 (450)
T PRK00149 336 PITLELAKEALKDLLAAQK-KKITIENIQKVVAEYYNIKVSDL--KSK--SRT-RNIARPRQIA----MYLAKE-LTDLS 404 (450)
T ss_pred CCCHHHHHHHHHHhhccCC-CCCCHHHHHHHHHHHcCCCHHHH--hCC--CCC-cccChHHHHH----HHHHHH-hcCCC
Confidence 6999999999998753322 22222222233333333222211 111 111 2233455533 222111 11222
Q ss_pred HHHHHHhHHHHhhHHHHHHHHhCCCCC
Q 003696 661 QKQLLARLDVCMGGRVAEELIFGRDHI 687 (802)
Q Consensus 661 ~~~l~~~I~v~LgGraAEel~fG~~~v 687 (802)
+.+|...+|||-.-.|+++...+
T Consensus 405 ----~~~Ig~~fg~rdhstV~~a~~~i 427 (450)
T PRK00149 405 ----LPEIGRAFGGRDHTTVLHAVRKI 427 (450)
T ss_pred ----HHHHHHHcCCCCHhHHHHHHHHH
Confidence 34588888999888888875443
No 61
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=5.8e-17 Score=188.59 Aligned_cols=203 Identities=20% Similarity=0.278 Sum_probs=152.8
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC------------
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p------------ 418 (802)
+.++.+|+||+|++.+++.|...+. .+++++.+||+||||||||++|+++|+.+++.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 4556799999999999999988876 46778899999999999999999999998762
Q ss_pred ------------eeEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHH
Q 003696 419 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 482 (802)
Q Consensus 419 ------------fi~is~se~~e~~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~ 482 (802)
++.+++++ ..+...+|++...+.. ....|+||||+|.|. ....+.|+.
T Consensus 77 sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS----------~~A~NALLK 140 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS----------THSFNALLK 140 (702)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC----------HHHHHHHHH
Confidence 23333321 1233456666655432 345699999999993 457888999
Q ss_pred HhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHH
Q 003696 483 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 561 (802)
Q Consensus 483 eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~Sga 561 (802)
.|+. ....+.+|.+|+.+..+.+.+++ |+ .++.+..++.++..+.++..+.+.... ++..+..|++.+.| +.+
T Consensus 141 tLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLR 214 (702)
T PRK14960 141 TLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLR 214 (702)
T ss_pred HHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9885 34556777777878888888875 77 688999999999999999998876554 44457788887765 888
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003696 562 DLANLVNIAAIKAAVDGGEKLTATELEFA 590 (802)
Q Consensus 562 DL~nLvn~Aa~~Aa~~~~~~It~edle~A 590 (802)
++.+++.++... +...|+.+++...
T Consensus 215 dALnLLDQaIay----g~g~IT~edV~~l 239 (702)
T PRK14960 215 DALSLTDQAIAY----GQGAVHHQDVKEM 239 (702)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 888888766532 4567898888654
No 62
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=1e-16 Score=184.44 Aligned_cols=216 Identities=20% Similarity=0.259 Sum_probs=159.1
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCee-------
Q 003696 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF------- 420 (802)
Q Consensus 348 ~~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi------- 420 (802)
+..+..+.+|+|++|++.+++.|+..+. ..++|.++||+||||||||++|+++|+.+++.--
T Consensus 11 la~kyRP~~f~dliGq~~vv~~L~~ai~-----------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~ 79 (507)
T PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSYTIL-----------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI 79 (507)
T ss_pred hhhhhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc
Confidence 3345677899999999999998887665 4577889999999999999999999999875311
Q ss_pred ----E-eecc--------chhhh--hhhhhHHHHHHHHHHHHhc----CCcEEEEcchhhhccccccCCcchHHHHHHHH
Q 003696 421 ----Y-RAGS--------EFEEM--FVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 481 (802)
Q Consensus 421 ----~-is~s--------e~~e~--~vG~~~k~vr~lF~~Ar~~----aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL 481 (802)
. -+|. ++.+. ....+...++++++.+... ...|+||||+|.+. ...++.|+
T Consensus 80 ~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls----------~~a~naLL 149 (507)
T PRK06645 80 KTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS----------KGAFNALL 149 (507)
T ss_pred CCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC----------HHHHHHHH
Confidence 0 0111 11110 0112446677877776532 34699999999983 46788899
Q ss_pred HHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCH
Q 003696 482 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNG 560 (802)
Q Consensus 482 ~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~Sg 560 (802)
..|+. ....+++|.+|+.++.+++++++ |+ ..+.+..++.++...+++..+++.... ++..+..|++.+.| +.
T Consensus 150 k~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-sl 223 (507)
T PRK06645 150 KTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SA 223 (507)
T ss_pred HHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 88884 45567777778888899999887 77 578899999999999999999876654 33457788888776 89
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003696 561 ADLANLVNIAAIKAAVDGGEKLTATELEFAK 591 (802)
Q Consensus 561 aDL~nLvn~Aa~~Aa~~~~~~It~edle~A~ 591 (802)
+++.++++.+..++... ...||.++++..+
T Consensus 224 R~al~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 224 RDAVSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred HHHHHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 99999999887665322 3468888876543
No 63
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=7.4e-17 Score=184.86 Aligned_cols=236 Identities=23% Similarity=0.271 Sum_probs=176.7
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhcCC----CeeEeeccchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhcc
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGV----PFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGS 464 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~eag~----pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~ 464 (802)
-.+.+|||+||+|+|||.|+++++.+... .+.+++|+.+...-.....+.++.+|..+..++|+||++|++|.|.+
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc
Confidence 34558999999999999999999998854 46688999987776777788899999999999999999999999987
Q ss_pred ccccCC---cchHHHHHHHHHH-hccc-ccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc
Q 003696 465 TRKQWE---GHTKKTLHQLLVE-MDGF-EQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 539 (802)
Q Consensus 465 ~r~~~~---~~~~~tLnqLL~e-LDg~-~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~ 539 (802)
..+... +...+.++.+|.. ++.| ..+..+.||++.+....|++.|..|++|+.++.++.|+..+|.+||++.+.+
T Consensus 509 ~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 509 ASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred cCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh
Confidence 333222 2223334444422 2223 3345579999999999999999999999999999999999999999999987
Q ss_pred CCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHHHhcccccccccchH----HHH
Q 003696 540 KPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD----GGEKLTATELEFAKDRILMGTERKTMFISE----ESK 610 (802)
Q Consensus 540 ~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~----~~~~It~edle~A~~ril~g~~~k~~~ls~----~~~ 610 (802)
.... ...|++.++..|+||...|+.-++.+|...|.+. +.+.+|.++|.+++...+.-.-+.- .+.. ..-
T Consensus 589 ~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~i-k~~k~tgi~w~ 667 (952)
T KOG0735|consen 589 NLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGI-KLVKSTGIRWE 667 (952)
T ss_pred hhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhc-cccccCCCCce
Confidence 6522 2334566999999999999999999998877732 2347899999999887654322111 0111 112
Q ss_pred HhHHHhhhhhHHHHH
Q 003696 611 KLTAYHESGHAIVAF 625 (802)
Q Consensus 611 ~~vA~HEaGHAlva~ 625 (802)
.+-..||+-.++...
T Consensus 668 digg~~~~k~~l~~~ 682 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEV 682 (952)
T ss_pred ecccHHHHHHHHHHH
Confidence 345677777776554
No 64
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=1.1e-16 Score=188.07 Aligned_cols=203 Identities=21% Similarity=0.319 Sum_probs=151.4
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC------------
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p------------ 418 (802)
+..+.+|+||+|++.+++.|+..+. .+++++.+||+||+|||||++|+++|+.+++.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~-----------~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALD-----------LGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 4456799999999999999988776 45678889999999999999999999998763
Q ss_pred ------------eeEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHH
Q 003696 419 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 482 (802)
Q Consensus 419 ------------fi~is~se~~e~~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~ 482 (802)
++.+++.+ ..+.+.+|++...+.. ....|+||||+|.| ....+|.||.
T Consensus 78 ~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L----------s~~a~NALLK 141 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML----------SRHSFNALLK 141 (647)
T ss_pred HHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC----------CHHHHHHHHH
Confidence 12222211 1123445666555432 34469999999999 3578999999
Q ss_pred HhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHH
Q 003696 483 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 561 (802)
Q Consensus 483 eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~Sga 561 (802)
.|+. ....+++|.+|+.+..|.+.+++ |+ ..+.|..++.++....|+..+....+. ++..+..|++.+.| +.+
T Consensus 142 tLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R 215 (647)
T PRK07994 142 TLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMR 215 (647)
T ss_pred HHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9985 45567777778889999999887 86 789999999999999999988765544 34457778887765 788
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003696 562 DLANLVNIAAIKAAVDGGEKLTATELEFA 590 (802)
Q Consensus 562 DL~nLvn~Aa~~Aa~~~~~~It~edle~A 590 (802)
+..+++.++... +...|+.+++...
T Consensus 216 ~Al~lldqaia~----~~~~it~~~v~~~ 240 (647)
T PRK07994 216 DALSLTDQAIAS----GNGQVTTDDVSAM 240 (647)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 888888766532 3345776666543
No 65
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=6.1e-17 Score=186.84 Aligned_cols=204 Identities=16% Similarity=0.227 Sum_probs=152.7
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC-----------
Q 003696 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP----------- 418 (802)
Q Consensus 350 ~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p----------- 418 (802)
.++.+.+|+||+|++.+++.|+..+. ..++|+.+||+||||||||++|+++|+.+++.
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~-----------~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALD-----------QQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHH-----------hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 35566799999999999999988886 45678889999999999999999999998763
Q ss_pred -------------eeEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHH
Q 003696 419 -------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 481 (802)
Q Consensus 419 -------------fi~is~se~~e~~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL 481 (802)
++++++++ ..+.+.+|++.+.+.. ....|+||||+|.|. ....|.||
T Consensus 77 ~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls----------~~a~naLL 140 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS----------GHSFNALL 140 (509)
T ss_pred HHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC----------HHHHHHHH
Confidence 33333221 2234456666665432 234699999999993 45788999
Q ss_pred HHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCH
Q 003696 482 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNG 560 (802)
Q Consensus 482 ~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~Sg 560 (802)
..|+.. ...+++|.+|+.+..+.+.+++ |+ ..+++..++.++....++..+++.+.. ++..+..|++.+.| +.
T Consensus 141 k~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-sl 214 (509)
T PRK14958 141 KTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SV 214 (509)
T ss_pred HHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 999853 4456777777888888888876 66 577889899999888888888776554 34457788887765 88
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003696 561 ADLANLVNIAAIKAAVDGGEKLTATELEFA 590 (802)
Q Consensus 561 aDL~nLvn~Aa~~Aa~~~~~~It~edle~A 590 (802)
+++.+++.++... +...||.+++...
T Consensus 215 R~al~lLdq~ia~----~~~~It~~~V~~~ 240 (509)
T PRK14958 215 RDALSLLDQSIAY----GNGKVLIADVKTM 240 (509)
T ss_pred HHHHHHHHHHHhc----CCCCcCHHHHHHH
Confidence 9999999877533 3467888777654
No 66
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.73 E-value=3.6e-16 Score=176.38 Aligned_cols=202 Identities=30% Similarity=0.384 Sum_probs=147.6
Q ss_pred CCCCCcccccCCHHHHHH---HHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchh
Q 003696 352 KNVKTFKDVKGCDDAKQE---LVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (802)
Q Consensus 352 ~~~~tFdDViG~deaK~e---L~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~ 428 (802)
..+.+|+|++|++++... |..++. +. .+.+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~-----------~~-~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~- 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIE-----------AG-RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS- 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHH-----------cC-CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-
Confidence 345689999999998666 666654 12 23489999999999999999999999999999987643
Q ss_pred hhhhhhhHHHHHHHHHHHH----hcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecC--CC
Q 003696 429 EMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN--LP 502 (802)
Q Consensus 429 e~~vG~~~k~vr~lF~~Ar----~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN--~p 502 (802)
+.+.++.+++.+. .....||||||+|.+. ...++.|+..++. ..+++|++|+ ..
T Consensus 73 ------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~----------~~~q~~LL~~le~----~~iilI~att~n~~ 132 (413)
T PRK13342 73 ------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN----------KAQQDALLPHVED----GTITLIGATTENPS 132 (413)
T ss_pred ------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC----------HHHHHHHHHHhhc----CcEEEEEeCCCChh
Confidence 2344556666553 2356799999999983 3445667776653 4567776653 34
Q ss_pred CCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccC--CC--CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC
Q 003696 503 DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK--PL--ADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG 578 (802)
Q Consensus 503 e~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~--~l--~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~ 578 (802)
..+++++++ |+ ..+.+++++.++...+++..+... .. ..+..+..+++.+. ...+.+.++++.+...
T Consensus 133 ~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~-Gd~R~aln~Le~~~~~----- 203 (413)
T PRK13342 133 FEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLAN-GDARRALNLLELAALG----- 203 (413)
T ss_pred hhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCC-CCHHHHHHHHHHHHHc-----
Confidence 578999988 88 788999999999999999887642 11 12334677888774 4677777777766543
Q ss_pred CCccCHHHHHHHHHHHh
Q 003696 579 GEKLTATELEFAKDRIL 595 (802)
Q Consensus 579 ~~~It~edle~A~~ril 595 (802)
...|+.+++..++....
T Consensus 204 ~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 204 VDSITLELLEEALQKRA 220 (413)
T ss_pred cCCCCHHHHHHHHhhhh
Confidence 46799999999887653
No 67
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.8e-16 Score=189.12 Aligned_cols=208 Identities=19% Similarity=0.240 Sum_probs=149.4
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCe-------eEe-
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF-------FYR- 422 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pf-------i~i- 422 (802)
+.++.+|+||+|++.+++.|+.++. ..++|+.+||+||||||||++||++|+.+++.- ..+
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~-----------~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALT-----------QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------hCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 4556799999999999999888776 456788889999999999999999999987641 110
Q ss_pred eccchhhh-------hh---hhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc
Q 003696 423 AGSEFEEM-------FV---GVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 488 (802)
Q Consensus 423 s~se~~e~-------~v---G~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~ 488 (802)
+|-.+... +- ..+...+|++...+.. ....|+||||+|.| ....+|.||..|+.
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L----------T~eAqNALLKtLEE-- 145 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML----------SRSSFNALLKTLEE-- 145 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc----------CHHHHHHHHHHHhc--
Confidence 00001000 00 1123445665554432 23469999999999 35789999999985
Q ss_pred cCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHH
Q 003696 489 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLV 567 (802)
Q Consensus 489 ~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLv 567 (802)
....+++|.+|+.+..|.+.+++ |+ .++.|..++.++..++|++.+....+. .+..+..|++.+.| +.+++.+++
T Consensus 146 PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnLL 221 (944)
T PRK14949 146 PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSLT 221 (944)
T ss_pred cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 44566777778888889888887 77 689999999999999999988765443 33447778887765 788888998
Q ss_pred HHHHHHHHHhCCCccCHHHHHH
Q 003696 568 NIAAIKAAVDGGEKLTATELEF 589 (802)
Q Consensus 568 n~Aa~~Aa~~~~~~It~edle~ 589 (802)
.++... +...++.+.+..
T Consensus 222 dQala~----~~~~It~~~V~~ 239 (944)
T PRK14949 222 DQAIAF----GGGQVMLTQVQT 239 (944)
T ss_pred HHHHHh----cCCcccHHHHHH
Confidence 876632 334566665543
No 68
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.72 E-value=3.1e-16 Score=176.27 Aligned_cols=222 Identities=22% Similarity=0.341 Sum_probs=152.4
Q ss_pred CCCCccc-ccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc-----CCCeeEeeccc
Q 003696 353 NVKTFKD-VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSE 426 (802)
Q Consensus 353 ~~~tFdD-ViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea-----g~pfi~is~se 426 (802)
+..+|++ ++|.+. ......+..+..++ .....+++||||||||||+|++++++++ +..++++++.+
T Consensus 105 ~~~tfd~fi~g~~n-~~a~~~~~~~~~~~-------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~ 176 (405)
T TIGR00362 105 PKYTFDNFVVGKSN-RLAHAAALAVAENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK 176 (405)
T ss_pred CCCcccccccCCcH-HHHHHHHHHHHhCc-------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH
Confidence 4468999 556443 22232333333332 1234579999999999999999999987 67899999988
Q ss_pred hhhhhhhhhHH-HHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCC-
Q 003696 427 FEEMFVGVGAR-RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI- 504 (802)
Q Consensus 427 ~~e~~vG~~~k-~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~- 504 (802)
|...+...... .+..+....+ .+.+|+|||+|.+.++. .+...++..++....+...+||+++..|..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~--------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l 246 (405)
T TIGR00362 177 FTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE--------RTQEEFFHTFNALHENGKQIVLTSDRPPKEL 246 (405)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH--------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHH
Confidence 87655433221 1222222222 35799999999986532 233344444444434445567777666654
Q ss_pred --CChhhcCCCccce--EEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 003696 505 --LDPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG 579 (802)
Q Consensus 505 --LD~ALlRpGRFdr--~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~ 579 (802)
+++.+.+ ||.. .+.+++||.++|..|++..++...+. ++..+..||+...+ +.++|+.+++.....|...+
T Consensus 247 ~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~~- 322 (405)
T TIGR00362 247 PGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLTG- 322 (405)
T ss_pred hhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC-
Confidence 5577776 8875 79999999999999999999876554 44447888887765 89999999998887776655
Q ss_pred CccCHHHHHHHHHHHhc
Q 003696 580 EKLTATELEFAKDRILM 596 (802)
Q Consensus 580 ~~It~edle~A~~ril~ 596 (802)
..||.+.+++++.....
T Consensus 323 ~~it~~~~~~~L~~~~~ 339 (405)
T TIGR00362 323 KPITLELAKEALKDLLR 339 (405)
T ss_pred CCCCHHHHHHHHHHhcc
Confidence 67999999999887644
No 69
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.7e-16 Score=181.62 Aligned_cols=203 Identities=19% Similarity=0.240 Sum_probs=155.6
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCC-------------
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV------------- 417 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~------------- 417 (802)
++.+.+|+||+|++.+++.|+..+. .+++|+++||+||||||||++|+.+|+.+++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~-----------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFT-----------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 3456799999999999998887765 4678899999999999999999999997643
Q ss_pred -----------CeeEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHH
Q 003696 418 -----------PFFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 482 (802)
Q Consensus 418 -----------pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~ 482 (802)
.++++++++ ..+...+|++.+.+.. ....|+||||+|.+. ...+|.||.
T Consensus 75 ~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls----------~~A~NaLLK 138 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS----------NSAFNALLK 138 (491)
T ss_pred HHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC----------HHHHHHHHH
Confidence 234444332 1234567777766643 234699999999993 467899999
Q ss_pred HhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHH
Q 003696 483 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 561 (802)
Q Consensus 483 eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~Sga 561 (802)
.|+. +...+++|.+|+.++.+.+.+++ |+ ..+.+..++.++..+.++..+++.+.. ++..+..|++.+.| +.+
T Consensus 139 ~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR 212 (491)
T PRK14964 139 TLEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMR 212 (491)
T ss_pred HHhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9985 34567777778888889999887 77 578999999999999999988776554 44557788888865 888
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003696 562 DLANLVNIAAIKAAVDGGEKLTATELEFA 590 (802)
Q Consensus 562 DL~nLvn~Aa~~Aa~~~~~~It~edle~A 590 (802)
++.++++++..+. ...||.+++...
T Consensus 213 ~alslLdqli~y~----~~~It~e~V~~l 237 (491)
T PRK14964 213 NALFLLEQAAIYS----NNKISEKSVRDL 237 (491)
T ss_pred HHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 9999988876543 357898888764
No 70
>PRK04195 replication factor C large subunit; Provisional
Probab=99.72 E-value=2.4e-16 Score=181.19 Aligned_cols=211 Identities=25% Similarity=0.281 Sum_probs=152.2
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccch
Q 003696 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (802)
Q Consensus 348 ~~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~ 427 (802)
|..+..+.+|+||+|++++++.|+.++....+ +.+++++||+||||||||++|+++|++++.+++.+++++.
T Consensus 4 W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred chhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 45667778999999999999999998864432 3447899999999999999999999999999999999876
Q ss_pred hhhhhhhhHHHHHHHHHHHHh------cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCC
Q 003696 428 EEMFVGVGARRVRSLFQAAKK------KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 501 (802)
Q Consensus 428 ~e~~vG~~~k~vr~lF~~Ar~------~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~ 501 (802)
... ..++.+...+.. ..+.+|+|||+|.+..+ .....++.|+..++. .+..+|++||.
T Consensus 76 r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~------~d~~~~~aL~~~l~~----~~~~iIli~n~ 139 (482)
T PRK04195 76 RTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN------EDRGGARAILELIKK----AKQPIILTAND 139 (482)
T ss_pred ccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccc------cchhHHHHHHHHHHc----CCCCEEEeccC
Confidence 432 122332222221 24679999999999542 123445666666652 23345557788
Q ss_pred CCCCCh-hhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 003696 502 PDILDP-ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG 579 (802)
Q Consensus 502 pe~LD~-ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~ 579 (802)
+..+++ .+++ | ...|.|+.|+.+++..+++.++...... ++..+..|++.+. +|++.+++.....+ .+.
T Consensus 140 ~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~----GDlR~ain~Lq~~a--~~~ 210 (482)
T PRK04195 140 PYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSG----GDLRSAINDLQAIA--EGY 210 (482)
T ss_pred ccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHh--cCC
Confidence 888777 5554 3 4689999999999999999998766544 3445788888654 48888888766533 355
Q ss_pred CccCHHHHHHHH
Q 003696 580 EKLTATELEFAK 591 (802)
Q Consensus 580 ~~It~edle~A~ 591 (802)
..|+.+++....
T Consensus 211 ~~it~~~v~~~~ 222 (482)
T PRK04195 211 GKLTLEDVKTLG 222 (482)
T ss_pred CCCcHHHHHHhh
Confidence 678888886543
No 71
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.72 E-value=1.1e-16 Score=191.68 Aligned_cols=221 Identities=19% Similarity=0.273 Sum_probs=158.4
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc----------CCCeeEeec
Q 003696 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRAG 424 (802)
Q Consensus 355 ~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea----------g~pfi~is~ 424 (802)
-.++.++|.++....+.+++. . +.+.++||+||||||||++|+++|... +..++.++.
T Consensus 183 g~~~~liGR~~ei~~~i~iL~---r---------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLC---R---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHh---c---------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 368899999988777666554 1 223578999999999999999999864 344555555
Q ss_pred cchh--hhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCC
Q 003696 425 SEFE--EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 502 (802)
Q Consensus 425 se~~--e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~p 502 (802)
..+. ..|.|..+.+++.+|..++...++||||||||.+.+.+....+ .....|.|...+ .+..+.+|++||.+
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g-~~d~~nlLkp~L----~~g~i~vIgATt~~ 325 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG-QVDAANLIKPLL----SSGKIRVIGSTTYQ 325 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc-HHHHHHHHHHHH----hCCCeEEEecCChH
Confidence 5444 4578888999999999998888899999999999776532221 122222222222 35779999999987
Q ss_pred C-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCccc-----HHHHHhcC-----CCCCHHHHHHHH
Q 003696 503 D-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVD-----VKAIARGT-----PGFNGADLANLV 567 (802)
Q Consensus 503 e-----~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvd-----l~~LA~~t-----~G~SgaDL~nLv 567 (802)
+ .+|++|.| ||+ .|.++.|+.+++..||+.+........+++ +..++..+ ..+-+.....++
T Consensus 326 E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidll 402 (758)
T PRK11034 326 EFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVI 402 (758)
T ss_pred HHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHH
Confidence 5 57999999 996 799999999999999998776544443333 33333322 234566888899
Q ss_pred HHHHHHHHH----hCCCccCHHHHHHHHHHHh
Q 003696 568 NIAAIKAAV----DGGEKLTATELEFAKDRIL 595 (802)
Q Consensus 568 n~Aa~~Aa~----~~~~~It~edle~A~~ril 595 (802)
++|+..... .....|+.+|+...+.+..
T Consensus 403 dea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 403 DEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred HHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 988864422 2345689999998887754
No 72
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.71 E-value=1e-16 Score=193.63 Aligned_cols=198 Identities=26% Similarity=0.341 Sum_probs=138.9
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchh---------h
Q 003696 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE---------E 429 (802)
Q Consensus 359 DViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~---------e 429 (802)
|+.|++++|+.+.+.+...+.. +...+..+||+||||||||++|+++|+.++.+|+.++++.+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 4899999999998876542211 111223799999999999999999999999999999876542 2
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcc-----ccc--------CCCEEEE
Q 003696 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-----FEQ--------NEGIILM 496 (802)
Q Consensus 430 ~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg-----~~~--------~~~VIVI 496 (802)
.|+|.....+.+.|..+....| ||||||||.+..... +. ..+.||..||. |.. .+++++|
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~---~~---~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR---GD---PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC---CC---HHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 3667667778888888776665 899999999975321 11 23455555542 211 1478999
Q ss_pred eecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhc-----cCCCC------CcccHHHHHh-cCCCCCHHHHH
Q 003696 497 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ-----DKPLA------DDVDVKAIAR-GTPGFNGADLA 564 (802)
Q Consensus 497 aATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~-----~~~l~------~dvdl~~LA~-~t~G~SgaDL~ 564 (802)
+|||.++.|+++|++ ||+ .|.++.|+.+++.+|++.++. ...+. .+..+..|++ .+.....++|+
T Consensus 468 ~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~ 544 (775)
T TIGR00763 468 ATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLE 544 (775)
T ss_pred EecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHH
Confidence 999999999999998 995 789999999999999998862 12221 2223555554 33344455655
Q ss_pred HHHHHHHH
Q 003696 565 NLVNIAAI 572 (802)
Q Consensus 565 nLvn~Aa~ 572 (802)
..+.....
T Consensus 545 r~i~~~~~ 552 (775)
T TIGR00763 545 RQIEKICR 552 (775)
T ss_pred HHHHHHHH
Confidence 54444433
No 73
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.71 E-value=3.5e-16 Score=177.93 Aligned_cols=226 Identities=17% Similarity=0.221 Sum_probs=154.4
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc-----CCCeeEeecc
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGS 425 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea-----g~pfi~is~s 425 (802)
-.+..||++.+..+........+..+..+|.. ..+++||||||+|||+|++++++++ +..++++++.
T Consensus 98 l~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~--------~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFAYHAALEVAKNPGR--------YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred CCCCCcccccccCCchHHHHHHHHHHHhCcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 34556899977334333334344443333321 3469999999999999999999975 4678899998
Q ss_pred chhhhhhhhhH-HHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCC
Q 003696 426 EFEEMFVGVGA-RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (802)
Q Consensus 426 e~~e~~vG~~~-k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~ 504 (802)
+|...+..... ..+.+ |.......+.+|+|||+|.+.++ ..+...++..++.+..+...+||++.+.|..
T Consensus 170 ~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~--------~~~q~elf~~~n~l~~~~k~iIitsd~~p~~ 240 (440)
T PRK14088 170 KFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK--------TGVQTELFHTFNELHDSGKQIVICSDREPQK 240 (440)
T ss_pred HHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc--------HHHHHHHHHHHHHHHHcCCeEEEECCCCHHH
Confidence 88766543321 12222 33322335789999999998543 1233344444544444555677777677765
Q ss_pred C---ChhhcCCCccce--EEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC
Q 003696 505 L---DPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG 578 (802)
Q Consensus 505 L---D~ALlRpGRFdr--~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~ 578 (802)
+ ++.+.+ ||.. .+.+.+||.+.|.+|++..+....+. ++..+..|++...| +.++|+.+++.....+...+
T Consensus 241 l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~ 317 (440)
T PRK14088 241 LSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTG 317 (440)
T ss_pred HHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHhC
Confidence 4 455665 7753 78899999999999999998764443 33347888888875 89999999998877776655
Q ss_pred CCccCHHHHHHHHHHHhcc
Q 003696 579 GEKLTATELEFAKDRILMG 597 (802)
Q Consensus 579 ~~~It~edle~A~~ril~g 597 (802)
..||.+.+.+++..++..
T Consensus 318 -~~it~~~a~~~L~~~~~~ 335 (440)
T PRK14088 318 -EEVDLKEAILLLKDFIKP 335 (440)
T ss_pred -CCCCHHHHHHHHHHHhcc
Confidence 679999999998876543
No 74
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=2.1e-16 Score=185.28 Aligned_cols=210 Identities=21% Similarity=0.314 Sum_probs=153.8
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCee-------Ee-
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF-------YR- 422 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi-------~i- 422 (802)
+..+.+|+||+|++.+++.|+..+. ..++|+++||+||+|||||++|+++|+.++++-. .+
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~-----------~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALD-----------EGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 4566799999999999999988876 3578889999999999999999999998865311 00
Q ss_pred ecc--------chhhh--hhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc
Q 003696 423 AGS--------EFEEM--FVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 488 (802)
Q Consensus 423 s~s--------e~~e~--~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~ 488 (802)
+|. ++.+. ....+...+++++..+.. ....||||||+|.|. ...+|.||..|+..
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls----------~~A~NALLKtLEEP- 146 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS----------KSAFNAMLKTLEEP- 146 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC----------HHHHHHHHHHHHhC-
Confidence 000 11000 112234567777765532 234699999999882 45788999999853
Q ss_pred cCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHH
Q 003696 489 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLV 567 (802)
Q Consensus 489 ~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLv 567 (802)
...+++|.+|+.+..+.+.+++ |+ ..+.|+.++.++...+|+..+.+.++. ++..+..|++.+.| +.+++.+++
T Consensus 147 -p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdAlnLL 221 (709)
T PRK08691 147 -PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDALSLL 221 (709)
T ss_pred -CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHHHHHH
Confidence 3456777778888888888875 77 567888999999999999999876654 34447788887764 889999999
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHH
Q 003696 568 NIAAIKAAVDGGEKLTATELEFAK 591 (802)
Q Consensus 568 n~Aa~~Aa~~~~~~It~edle~A~ 591 (802)
+++... +...|+.+++...+
T Consensus 222 Dqaia~----g~g~It~e~V~~lL 241 (709)
T PRK08691 222 DQAIAL----GSGKVAENDVRQMI 241 (709)
T ss_pred HHHHHh----cCCCcCHHHHHHHH
Confidence 877654 34578888776554
No 75
>PLN03025 replication factor C subunit; Provisional
Probab=99.71 E-value=4e-16 Score=170.16 Aligned_cols=203 Identities=19% Similarity=0.196 Sum_probs=139.9
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCC-----CeeEe
Q 003696 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-----PFFYR 422 (802)
Q Consensus 348 ~~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~-----pfi~i 422 (802)
|..+..+.+|+||+|++++++.|+.++. +...| ++||+||||||||++|+++|+++.. .++.+
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~-----------~~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIAR-----------DGNMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHh-----------cCCCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 4456677899999999999998887765 23445 6999999999999999999999733 35566
Q ss_pred eccchhhhhhhhhHHHHHHHHHHH---H----hcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEE
Q 003696 423 AGSEFEEMFVGVGARRVRSLFQAA---K----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIL 495 (802)
Q Consensus 423 s~se~~e~~vG~~~k~vr~lF~~A---r----~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIV 495 (802)
++++... ...+++..... . ...+.|++|||+|.+. ...++.|+..|+.+... ..+
T Consensus 71 n~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt----------~~aq~aL~~~lE~~~~~--t~~ 132 (319)
T PLN03025 71 NASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT----------SGAQQALRRTMEIYSNT--TRF 132 (319)
T ss_pred ccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC----------HHHHHHHHHHHhcccCC--ceE
Confidence 6655322 12233332221 1 1235799999999993 34567777777754433 345
Q ss_pred EeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 003696 496 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKA 574 (802)
Q Consensus 496 IaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~A 574 (802)
|.+||.+..+.+++++ |+ ..+.++.|+.++...+++..+++.... ++..+..|+....| |++.+++.....+
T Consensus 133 il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~Lq~~~ 205 (319)
T PLN03025 133 ALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNNLQATH 205 (319)
T ss_pred EEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHH
Confidence 5577788888888887 76 578999999999999999988776544 34457788876554 5555544433222
Q ss_pred HHhCCCccCHHHHHH
Q 003696 575 AVDGGEKLTATELEF 589 (802)
Q Consensus 575 a~~~~~~It~edle~ 589 (802)
.+...||.+++..
T Consensus 206 --~~~~~i~~~~v~~ 218 (319)
T PLN03025 206 --SGFGFVNQENVFK 218 (319)
T ss_pred --hcCCCCCHHHHHH
Confidence 2345788887754
No 76
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=7.6e-16 Score=179.73 Aligned_cols=203 Identities=22% Similarity=0.312 Sum_probs=153.4
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC------------
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p------------ 418 (802)
+..+.+|+||+|++.+++.|+..+. ..++++.+||+||+|||||++|+.+|+.++++
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~-----------~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIK-----------QGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 4456799999999999999988876 35677889999999999999999999987642
Q ss_pred ------------eeEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHH
Q 003696 419 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 482 (802)
Q Consensus 419 ------------fi~is~se~~e~~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~ 482 (802)
++.++++ .+.+...++++...+.. ....|+||||+|.| +...+|.||.
T Consensus 78 ~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L----------t~~a~naLLK 141 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML----------STGAFNALLK 141 (559)
T ss_pred HHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC----------CHHHHHHHHH
Confidence 2222221 12344567777776653 23469999999999 3467889999
Q ss_pred HhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHH
Q 003696 483 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 561 (802)
Q Consensus 483 eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~Sga 561 (802)
.++. +...+++|.+|+.++.|.+.+++ |+ ..+.|++|+.++...+++..+++.+.. ++..+..|++.+.| +.+
T Consensus 142 tLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R 215 (559)
T PRK05563 142 TLEE--PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMR 215 (559)
T ss_pred HhcC--CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9985 44567777778889999999887 77 467899999999999999988776544 33447778887765 888
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003696 562 DLANLVNIAAIKAAVDGGEKLTATELEFA 590 (802)
Q Consensus 562 DL~nLvn~Aa~~Aa~~~~~~It~edle~A 590 (802)
++.+++.++... +...||.+++..+
T Consensus 216 ~al~~Ldq~~~~----~~~~It~~~V~~v 240 (559)
T PRK05563 216 DALSILDQAISF----GDGKVTYEDALEV 240 (559)
T ss_pred HHHHHHHHHHHh----ccCCCCHHHHHHH
Confidence 888888877654 2456888877654
No 77
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=6.8e-16 Score=177.92 Aligned_cols=203 Identities=22% Similarity=0.284 Sum_probs=149.8
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC------------
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p------------ 418 (802)
+..+.+|+||+|++.+++.|+..+. ..++|+.+|||||||||||++|+++|+.+.+.
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~-----------~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALR-----------QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 4456799999999999999988886 35678788999999999999999999988541
Q ss_pred -----------eeEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHH
Q 003696 419 -----------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 483 (802)
Q Consensus 419 -----------fi~is~se~~e~~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~e 483 (802)
++.+++++ ..+...++++...+.. ..+.||||||+|.+ ....++.|+..
T Consensus 76 c~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l----------s~~a~naLLk~ 139 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM----------SKSAFNALLKT 139 (504)
T ss_pred hHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc----------CHHHHHHHHHH
Confidence 23333221 1223456665544432 34579999999987 24678899999
Q ss_pred hcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHH
Q 003696 484 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGAD 562 (802)
Q Consensus 484 LDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaD 562 (802)
|+.. ...+++|.+|+.+..+.+.+.+ |+ .++.|..|+.++...+++..+++.... ++..+..|++.+.| +.++
T Consensus 140 LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~ 213 (504)
T PRK14963 140 LEEP--PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRD 213 (504)
T ss_pred HHhC--CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 8853 3456777778888999999887 76 478999999999999999998776554 34447778887765 6777
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003696 563 LANLVNIAAIKAAVDGGEKLTATELEFAK 591 (802)
Q Consensus 563 L~nLvn~Aa~~Aa~~~~~~It~edle~A~ 591 (802)
+.++++.+... ...||.+++...+
T Consensus 214 aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 214 AESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred HHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 77777765321 3478888877653
No 78
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=5.8e-16 Score=181.41 Aligned_cols=203 Identities=19% Similarity=0.269 Sum_probs=151.3
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC------------
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p------------ 418 (802)
++.+.+|+||+|++.+++.|+.++. ..++|+.+||+||+|||||++|+++|+.+++.
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~-----------~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALT-----------QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 4556799999999999999988876 45778889999999999999999999998751
Q ss_pred -----------------eeEeeccchhhhhhhhhHHHHHHHHHHHHhc----CCcEEEEcchhhhccccccCCcchHHHH
Q 003696 419 -----------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTL 477 (802)
Q Consensus 419 -----------------fi~is~se~~e~~vG~~~k~vr~lF~~Ar~~----aP~ILfIDEIDaLg~~r~~~~~~~~~tL 477 (802)
++.+++.+ ..+...+|++.+.+... ...|+||||+|.|. ....
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls----------~~a~ 141 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT----------NTAF 141 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC----------HHHH
Confidence 12222111 12334567777665432 23599999999993 4678
Q ss_pred HHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCC
Q 003696 478 HQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTP 556 (802)
Q Consensus 478 nqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~ 556 (802)
|.||..|+. ....+++|.+|+.+..+.+.+++ |+ .++++..++.++..+.|+..+.+.... ++..+..|++.+.
T Consensus 142 NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~ 216 (618)
T PRK14951 142 NAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAAR 216 (618)
T ss_pred HHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 899999885 44566777777778888888876 76 788999999999999999988776554 3344788888777
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003696 557 GFNGADLANLVNIAAIKAAVDGGEKLTATELEFA 590 (802)
Q Consensus 557 G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A 590 (802)
| +.+++.+++.++... +...||.+++...
T Consensus 217 G-slR~al~lLdq~ia~----~~~~It~~~V~~~ 245 (618)
T PRK14951 217 G-SMRDALSLTDQAIAF----GSGQLQEAAVRQM 245 (618)
T ss_pred C-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 6 888888888766543 3456887776554
No 79
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.69 E-value=8.7e-16 Score=168.33 Aligned_cols=207 Identities=20% Similarity=0.308 Sum_probs=151.3
Q ss_pred cCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC----------
Q 003696 349 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---------- 418 (802)
Q Consensus 349 ~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p---------- 418 (802)
..+.++.+|+|++|++++++.|++.+. .++.|+.+|||||||+|||++|+++|+.+.++
T Consensus 5 ~~~~rp~~~~~iig~~~~~~~l~~~~~-----------~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~ 73 (355)
T TIGR02397 5 ARKYRPQTFEDVIGQEHIVQTLKNAIK-----------NGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNE 73 (355)
T ss_pred HHHhCCCcHhhccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 345567799999999999999988775 35577889999999999999999999987543
Q ss_pred --------------eeEeeccchhhhhhhhhHHHHHHHHHHHHhc----CCcEEEEcchhhhccccccCCcchHHHHHHH
Q 003696 419 --------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQL 480 (802)
Q Consensus 419 --------------fi~is~se~~e~~vG~~~k~vr~lF~~Ar~~----aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqL 480 (802)
++.+++.. ......+++++..+... ...||+|||+|.+. ...++.|
T Consensus 74 c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~----------~~~~~~L 137 (355)
T TIGR02397 74 CESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS----------KSAFNAL 137 (355)
T ss_pred CHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC----------HHHHHHH
Confidence 22222211 11234567777766432 23599999999883 3567888
Q ss_pred HHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCC
Q 003696 481 LVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFN 559 (802)
Q Consensus 481 L~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~S 559 (802)
+..++. ....+++|.+|+.++.+.+++++ |+ ..+.+++|+.++..++++.++++.... ++..+..++..+.| +
T Consensus 138 l~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~ 211 (355)
T TIGR02397 138 LKTLEE--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-S 211 (355)
T ss_pred HHHHhC--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 988875 33456777777888888888887 77 578999999999999999998876543 33446677777654 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003696 560 GADLANLVNIAAIKAAVDGGEKLTATELEFAKD 592 (802)
Q Consensus 560 gaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~ 592 (802)
.+.+.+.++.+...+ ...||.++++.++.
T Consensus 212 ~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 212 LRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred hHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 777777777665542 24599999977653
No 80
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.69 E-value=1.6e-15 Score=164.77 Aligned_cols=212 Identities=20% Similarity=0.255 Sum_probs=140.6
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcC-----CCeeEe
Q 003696 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-----VPFFYR 422 (802)
Q Consensus 348 ~~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag-----~pfi~i 422 (802)
|..+..+.+|++++|++++++.|..++. ....| ++||+||||||||++|+++++++. .+++++
T Consensus 5 w~~ky~P~~~~~~~g~~~~~~~L~~~~~-----------~~~~~-~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i 72 (337)
T PRK12402 5 WTEKYRPALLEDILGQDEVVERLSRAVD-----------SPNLP-HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEF 72 (337)
T ss_pred hHHhhCCCcHHHhcCCHHHHHHHHHHHh-----------CCCCc-eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEe
Confidence 4455667799999999999999888775 12233 699999999999999999999874 457888
Q ss_pred eccchhhhh-------------hhh-------hHHHHHHHHHHHHh-----cCCcEEEEcchhhhccccccCCcchHHHH
Q 003696 423 AGSEFEEMF-------------VGV-------GARRVRSLFQAAKK-----KAPCIIFIDEIDAVGSTRKQWEGHTKKTL 477 (802)
Q Consensus 423 s~se~~e~~-------------vG~-------~~k~vr~lF~~Ar~-----~aP~ILfIDEIDaLg~~r~~~~~~~~~tL 477 (802)
+++++.... .+. ....++.+...... ..+.+|||||+|.+. ....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~----------~~~~ 142 (337)
T PRK12402 73 NVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR----------EDAQ 142 (337)
T ss_pred chhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC----------HHHH
Confidence 887764221 011 11223333323222 234699999999883 2334
Q ss_pred HHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCC
Q 003696 478 HQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTP 556 (802)
Q Consensus 478 nqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~ 556 (802)
+.|+..++....+ . .+|.+|+.+..+.+.+.+ |+ ..+.+.+|+.++...+++..+++.... ++..+..+++.+.
T Consensus 143 ~~L~~~le~~~~~-~-~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~ 217 (337)
T PRK12402 143 QALRRIMEQYSRT-C-RFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG 217 (337)
T ss_pred HHHHHHHHhccCC-C-eEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5566666654333 2 344455556677777776 65 578999999999999999988776554 4445778888764
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003696 557 GFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKD 592 (802)
Q Consensus 557 G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~ 592 (802)
| + ++.+++.....+ .+...||.+++..++.
T Consensus 218 g-d---lr~l~~~l~~~~--~~~~~It~~~v~~~~~ 247 (337)
T PRK12402 218 G-D---LRKAILTLQTAA--LAAGEITMEAAYEALG 247 (337)
T ss_pred C-C---HHHHHHHHHHHH--HcCCCCCHHHHHHHhC
Confidence 3 4 444544444333 2334799999876543
No 81
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=6.2e-16 Score=179.35 Aligned_cols=210 Identities=20% Similarity=0.271 Sum_probs=150.7
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCe-------eEee
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF-------FYRA 423 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pf-------i~is 423 (802)
+..+.+|+||+|++.+++.|...+. ..++++.+||+||||+|||++|+++|+.+++.. -.++
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~-----------~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALE-----------QQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHH-----------cCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 4456799999999999999988876 356788899999999999999999999987631 1100
Q ss_pred -cc--------chhhh--hhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc
Q 003696 424 -GS--------EFEEM--FVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 488 (802)
Q Consensus 424 -~s--------e~~e~--~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~ 488 (802)
|. ++.+. -...+...+|++...+.. ....|+||||+|.+. ....|.||..|+.
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls----------~~a~naLLK~LEe-- 145 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS----------KSAFNAMLKTLEE-- 145 (527)
T ss_pred HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC----------HHHHHHHHHHHhC--
Confidence 00 11000 001234557777766643 234599999999993 4678899999985
Q ss_pred cCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHH
Q 003696 489 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLV 567 (802)
Q Consensus 489 ~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLv 567 (802)
....+++|.+|+.++.+.+.+++ |+ ..+.|+.++.++....++..+++.... ++..+..|++.+.| +.+++.+++
T Consensus 146 pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~al~ll 221 (527)
T PRK14969 146 PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRDALSLL 221 (527)
T ss_pred CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 34566777777778888877776 66 688999999999999998888765544 33446777777654 788888888
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHH
Q 003696 568 NIAAIKAAVDGGEKLTATELEFAK 591 (802)
Q Consensus 568 n~Aa~~Aa~~~~~~It~edle~A~ 591 (802)
+++... +...|+.+++...+
T Consensus 222 dqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 222 DQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHh----cCCCcCHHHHHHHH
Confidence 877543 45677877766543
No 82
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.68 E-value=3.3e-15 Score=164.50 Aligned_cols=220 Identities=23% Similarity=0.320 Sum_probs=151.3
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcC---------CCeeEeeccch
Q 003696 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---------VPFFYRAGSEF 427 (802)
Q Consensus 357 FdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag---------~pfi~is~se~ 427 (802)
.++++|.++..++|...+..... +..|.+++|+||||||||++++++++++. +++++++|...
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 34789999988888777653221 23456899999999999999999998652 57888888654
Q ss_pred hhh----------hh--hh--------hHHHHHHHHHHHHh-cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcc
Q 003696 428 EEM----------FV--GV--------GARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG 486 (802)
Q Consensus 428 ~e~----------~v--G~--------~~k~vr~lF~~Ar~-~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg 486 (802)
... .. |. ..+....++..... ..+.||+|||+|.+.+. .+..+.+|+...+.
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-------~~~~L~~l~~~~~~ 158 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-------DDDLLYQLSRARSN 158 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-------CcHHHHhHhccccc
Confidence 321 10 10 11223444554432 45779999999999631 12456666654221
Q ss_pred -cccCCCEEEEeecCCCC---CCChhhcCCCccc-eEEEccCCCHHHHHHHHHHHhccC---CCCCcccHHH---HHhcC
Q 003696 487 -FEQNEGIILMAATNLPD---ILDPALTRPGRFD-RHIVVPNPDVRGRQEILELYLQDK---PLADDVDVKA---IARGT 555 (802)
Q Consensus 487 -~~~~~~VIVIaATN~pe---~LD~ALlRpGRFd-r~I~v~lPd~eeR~~ILk~~l~~~---~l~~dvdl~~---LA~~t 555 (802)
...+.++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++.++... ..-++..+.. ++..+
T Consensus 159 ~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~ 236 (365)
T TIGR02928 159 GDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQE 236 (365)
T ss_pred cCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHh
Confidence 12336788899999875 57778776 775 579999999999999999988631 1112222333 34444
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003696 556 PGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 594 (802)
Q Consensus 556 ~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~ri 594 (802)
.| ..+.+.++|+.|+..|..++...|+.+|+..|++.+
T Consensus 237 ~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 237 HG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred cC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 44 566777889999999988888899999999999876
No 83
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.67 E-value=1.4e-15 Score=173.18 Aligned_cols=270 Identities=17% Similarity=0.240 Sum_probs=171.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhcccccc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ 468 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~ 468 (802)
.+++||||||+|||+|++++++++ +..++++++.+|...+.......-.+.|.... ..+++|+|||++.+.++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh--
Confidence 579999999999999999999875 68899999888766544332211122344332 346799999999985431
Q ss_pred CCcchHHHHHHHHHHhcccccCCCEEEEeecCCCC---CCChhhcCCCccc--eEEEccCCCHHHHHHHHHHHhccCCCC
Q 003696 469 WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD---ILDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPLA 543 (802)
Q Consensus 469 ~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe---~LD~ALlRpGRFd--r~I~v~lPd~eeR~~ILk~~l~~~~l~ 543 (802)
.+...++..++.+......+|+++++.|. .+++.|.+ ||. ..+.+.+|+.++|..||+..+....+.
T Consensus 219 ------~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~ 290 (445)
T PRK12422 219 ------ATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIR 290 (445)
T ss_pred ------hhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 22333333333332334556666666564 45778887 896 688999999999999999998876544
Q ss_pred -CcccHHHHHhcCCCCCHHHHHHHHHHHHH---HHHHhCCCccCHHHHHHHHHHHhcccccccccchHHHHHhHHHhhhh
Q 003696 544 -DDVDVKAIARGTPGFNGADLANLVNIAAI---KAAVDGGEKLTATELEFAKDRILMGTERKTMFISEESKKLTAYHESG 619 (802)
Q Consensus 544 -~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~---~Aa~~~~~~It~edle~A~~ril~g~~~k~~~ls~~~~~~vA~HEaG 619 (802)
++..+..|+....+ +.++|.+.++..+. .+... ...||.++++.++..++...++....+..-.+.+..++...
T Consensus 291 l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~-~~~i~~~~~~~~l~~~~~~~~~~~~t~~~I~~~Va~~~~v~ 368 (445)
T PRK12422 291 IEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLS-HQLLYVDDIKALLHDVLEAAESVRLTPSKIIRAVAQYYGVS 368 (445)
T ss_pred CCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHhCCC
Confidence 33336668887664 78888888887753 33223 36799999999998865443332333333334444455555
Q ss_pred hHHHHHhcCCCCcceEEEEecCCCcccceEeccCCCcccccHHHHHHhHHHHhhHHHHHHHHhCCCCCCc
Q 003696 620 HAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQLLARLDVCMGGRVAEELIFGRDHITT 689 (802)
Q Consensus 620 HAlva~~~~~~~~v~kvtI~pRg~alG~~~~~p~~~~~~~t~~~l~~~I~v~LgGraAEel~fG~~~vts 689 (802)
+.-+-.... .+-...||.-+ +|+-.+ .+..| +..|.-.+| |-+-.|+++...+..
T Consensus 369 ~~dl~s~~R-----~~~i~~~Rqia----myl~r~-~t~~s----~~~IG~~fg-rdHsTV~~a~~ki~~ 423 (445)
T PRK12422 369 PESILGRSQ-----SREYVLPRQVA----MYLCRQ-KLSLS----YVKIGDVFS-RDHSTVISSIRAISQ 423 (445)
T ss_pred HHHHhcCCC-----CcccccHHHHH----HHHHHH-hcCCC----HHHHHHHhC-CChHHHHHHHHHHHH
Confidence 444322111 22344577654 222221 11122 345888887 999999998655543
No 84
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.3e-15 Score=177.77 Aligned_cols=205 Identities=20% Similarity=0.281 Sum_probs=148.6
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC-----------
Q 003696 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP----------- 418 (802)
Q Consensus 350 ~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p----------- 418 (802)
.+..+.+|+||+|++.+++.|+..+. ..+++..+||+||||||||++|+++|+.+++.
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~-----------~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQ-----------ENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 35567799999999999999988876 34667799999999999999999999998763
Q ss_pred -------------eeEeeccchhhhhhhhhHHHHHHHHHHHH----hcCCcEEEEcchhhhccccccCCcchHHHHHHHH
Q 003696 419 -------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 481 (802)
Q Consensus 419 -------------fi~is~se~~e~~vG~~~k~vr~lF~~Ar----~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL 481 (802)
++.+++.. ..+...++.+.+.+. .....||||||+|.|. ...++.||
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt----------~~a~naLL 140 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT----------REAFNALL 140 (624)
T ss_pred HHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC----------HHHHHHHH
Confidence 22332211 112233444333322 2334699999999993 45688999
Q ss_pred HHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCH
Q 003696 482 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNG 560 (802)
Q Consensus 482 ~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~Sg 560 (802)
..|+. ....+++|.+||.+..+.+.+++ |+ .++.|+.++.++...+|+..+.+.... ++..+..|++.+.| +.
T Consensus 141 k~LEE--P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-dl 214 (624)
T PRK14959 141 KTLEE--PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-SV 214 (624)
T ss_pred HHhhc--cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 99885 34567788888888888888876 77 478999999999999999888766543 34457778877654 66
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003696 561 ADLANLVNIAAIKAAVDGGEKLTATELEFAK 591 (802)
Q Consensus 561 aDL~nLvn~Aa~~Aa~~~~~~It~edle~A~ 591 (802)
+++.++++++. ..+...||.+++..++
T Consensus 215 R~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 215 RDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 67777776542 2355689999887665
No 85
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.9e-15 Score=175.11 Aligned_cols=203 Identities=19% Similarity=0.265 Sum_probs=147.2
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC------------
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p------------ 418 (802)
+..+.+|+||+|++.+++.|...+. ..+.|+.+||+||||||||++|+++|+.+++.
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~-----------~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALE-----------TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 4456799999999999998888776 34678889999999999999999999987641
Q ss_pred ------------eeEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHH
Q 003696 419 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 482 (802)
Q Consensus 419 ------------fi~is~se~~e~~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~ 482 (802)
++.+++.. ..+...++++.+.+.. ....|+||||+|.+ ....++.||.
T Consensus 78 sC~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l----------s~~a~naLLK 141 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHML----------SKQSFNALLK 141 (546)
T ss_pred HHHHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc----------cHHHHHHHHH
Confidence 22222110 1122345555555432 23469999999999 3467889999
Q ss_pred HhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHH
Q 003696 483 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 561 (802)
Q Consensus 483 eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~Sga 561 (802)
.|+. ....+++|.+|+.+..+.+.+++ |+ ..+++..++.++....++..+++.... ++..+..|++.+. .+.+
T Consensus 142 ~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~-GdlR 215 (546)
T PRK14957 142 TLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK-GSLR 215 (546)
T ss_pred HHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHH
Confidence 9985 34456666666778888878776 77 789999999999999999888765544 3444677787775 4788
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003696 562 DLANLVNIAAIKAAVDGGEKLTATELEFA 590 (802)
Q Consensus 562 DL~nLvn~Aa~~Aa~~~~~~It~edle~A 590 (802)
++.++++.+.... + ..|+.++++.+
T Consensus 216 ~alnlLek~i~~~---~-~~It~~~V~~~ 240 (546)
T PRK14957 216 DALSLLDQAISFC---G-GELKQAQIKQM 240 (546)
T ss_pred HHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 8888887766432 2 56888777764
No 86
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.7e-15 Score=176.76 Aligned_cols=204 Identities=19% Similarity=0.221 Sum_probs=149.7
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC------------
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p------------ 418 (802)
++.+.+|+||+|++.+++.|+..+. .+++|+.+||+||+|||||++|+++|+.+++.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~-----------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALD-----------AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 4456799999999999999988876 45788889999999999999999999988752
Q ss_pred --------------eeEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHH
Q 003696 419 --------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQL 480 (802)
Q Consensus 419 --------------fi~is~se~~e~~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqL 480 (802)
++.++++. ..+...++++.+.+.. ....|+||||+|.|. ...+|.|
T Consensus 75 ~C~~i~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt----------~~A~NAL 138 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT----------TAGFNAL 138 (584)
T ss_pred HHHHhhcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC----------HHHHHHH
Confidence 11222111 1123445555444422 234599999999993 4688999
Q ss_pred HHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCC
Q 003696 481 LVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFN 559 (802)
Q Consensus 481 L~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~S 559 (802)
|..|+. ....+++|.+|+.++.|.+.+++ |+ .++.|..++.++..++++.++++.... ++..+..|++... .+
T Consensus 139 LK~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~-Gd 212 (584)
T PRK14952 139 LKIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG-GS 212 (584)
T ss_pred HHHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CC
Confidence 999985 44577888888888999999887 75 689999999999999999988876544 3334566666554 57
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003696 560 GADLANLVNIAAIKAAVDGGEKLTATELEFA 590 (802)
Q Consensus 560 gaDL~nLvn~Aa~~Aa~~~~~~It~edle~A 590 (802)
.+++.++++++.... +...||.+++...
T Consensus 213 lR~aln~Ldql~~~~---~~~~It~~~v~~l 240 (584)
T PRK14952 213 PRDTLSVLDQLLAGA---ADTHVTYQRALGL 240 (584)
T ss_pred HHHHHHHHHHHHhcc---CCCCcCHHHHHHH
Confidence 888888888765432 3467888777654
No 87
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.9e-15 Score=182.26 Aligned_cols=203 Identities=20% Similarity=0.204 Sum_probs=147.6
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC------------
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p------------ 418 (802)
++...+|+||+|++.+++.|+..+. ..++++.+||+||+|||||++|++||+.+++.
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~-----------~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALD-----------SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 4456799999999999999988876 45678889999999999999999999998752
Q ss_pred --------------eeEeeccchhhhhhhhhHHHHHHHHHHHH----hcCCcEEEEcchhhhccccccCCcchHHHHHHH
Q 003696 419 --------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQL 480 (802)
Q Consensus 419 --------------fi~is~se~~e~~vG~~~k~vr~lF~~Ar----~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqL 480 (802)
|+.+++.. ..+...+|++-+.+. .....|+||||+|.| +...+|.|
T Consensus 77 sC~~~~~g~~~~~dv~eidaas------~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l----------t~~a~NaL 140 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAAS------HGGVDDARELRERAFFAPAESRYKIFIIDEAHMV----------TPQGFNAL 140 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEechhhc----------CHHHHHHH
Confidence 11121111 012344555433332 234569999999999 35788999
Q ss_pred HHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCC
Q 003696 481 LVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFN 559 (802)
Q Consensus 481 L~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~S 559 (802)
|+.|+.. ...+++|.+|+.++.|-+.|++ |+ .++.|..++.++..++|+..+++..+. ++..+..|++...| +
T Consensus 141 LK~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-d 214 (824)
T PRK07764 141 LKIVEEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-S 214 (824)
T ss_pred HHHHhCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999853 4466777777888888888887 66 688999999999999999988776654 33346667776655 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 003696 560 GADLANLVNIAAIKAAVDGGEKLTATELEF 589 (802)
Q Consensus 560 gaDL~nLvn~Aa~~Aa~~~~~~It~edle~ 589 (802)
.+++.+++++.... .+...||.+++..
T Consensus 215 lR~Al~eLEKLia~---~~~~~IT~e~V~a 241 (824)
T PRK07764 215 VRDSLSVLDQLLAG---AGPEGVTYERAVA 241 (824)
T ss_pred HHHHHHHHHHHHhh---cCCCCCCHHHHHH
Confidence 88888888875532 2345688776654
No 88
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.66 E-value=3.9e-15 Score=173.19 Aligned_cols=225 Identities=19% Similarity=0.231 Sum_probs=152.9
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc-----CCCeeEeeccch
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEF 427 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea-----g~pfi~is~se~ 427 (802)
...+|++++.-+.-......+.....++. .....++|||++|||||+|++|+++++ +..++|+++.+|
T Consensus 283 ~~~TFDnFvvG~sN~~A~aaa~avae~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef 355 (617)
T PRK14086 283 PKYTFDTFVIGASNRFAHAAAVAVAEAPA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF 355 (617)
T ss_pred CCCCHhhhcCCCccHHHHHHHHHHHhCcc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 34589997644332222222222222221 112359999999999999999999976 567899999998
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCC---C
Q 003696 428 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD---I 504 (802)
Q Consensus 428 ~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe---~ 504 (802)
...+.........+.|.... ..+++|+||||+.+.++. .+...|+..++....+.+.+||++...|. .
T Consensus 356 ~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke--------~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~ 426 (617)
T PRK14086 356 TNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE--------STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVT 426 (617)
T ss_pred HHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH--------HHHHHHHHHHHHHHhcCCCEEEecCCChHhhhh
Confidence 87766544333333444322 346899999999996532 22334444444444444455565544454 5
Q ss_pred CChhhcCCCccce--EEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 003696 505 LDPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEK 581 (802)
Q Consensus 505 LD~ALlRpGRFdr--~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~ 581 (802)
+++.|.+ ||.. .+.+..||.+.|.+||+.++....+. ++.-+..|+++..+ +.++|+.++++....+...+ ..
T Consensus 427 l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~~-~~ 502 (617)
T PRK14086 427 LEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLNR-QP 502 (617)
T ss_pred ccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhC-CC
Confidence 6788887 8866 77999999999999999999877665 33347788887764 79999999998877766655 67
Q ss_pred cCHHHHHHHHHHHhcc
Q 003696 582 LTATELEFAKDRILMG 597 (802)
Q Consensus 582 It~edle~A~~ril~g 597 (802)
||.+.++.++..++..
T Consensus 503 itl~la~~vL~~~~~~ 518 (617)
T PRK14086 503 VDLGLTEIVLRDLIPE 518 (617)
T ss_pred CCHHHHHHHHHHhhcc
Confidence 9999999988876553
No 89
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.66 E-value=2.5e-15 Score=182.69 Aligned_cols=218 Identities=22% Similarity=0.256 Sum_probs=154.1
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc----------CCCeeEe
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYR 422 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea----------g~pfi~i 422 (802)
...++++++|+++. ++.++..|.... ..+++|+||||||||++|+.+|... +..++.+
T Consensus 182 r~~~ld~~iGr~~e---i~~~i~~l~r~~---------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 182 REGKIDPVLGRDDE---IRQMIDILLRRR---------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred cCCCCCcccCCHHH---HHHHHHHHhcCC---------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 34579999999986 555554443322 2378999999999999999999976 2447777
Q ss_pred eccchh--hhhhhhhHHHHHHHHHHHHh-cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeec
Q 003696 423 AGSEFE--EMFVGVGARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 499 (802)
Q Consensus 423 s~se~~--e~~vG~~~k~vr~lF~~Ar~-~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaAT 499 (802)
+.+.+. ..|.|..+++++.+|..++. ..++||||||||.+.+.++.... ....|-|+..+ .++.+.+|+||
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~--~d~~n~Lkp~l----~~G~l~~IgaT 323 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ--GDAANLLKPAL----ARGELRTIAAT 323 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc--ccHHHHhhHHh----hCCCeEEEEec
Confidence 777665 35788899999999999875 46789999999999775543221 12223344333 46789999999
Q ss_pred CCCC-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCC----CC-CcccHHHHHhcCCCCC-----HHHHH
Q 003696 500 NLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP----LA-DDVDVKAIARGTPGFN-----GADLA 564 (802)
Q Consensus 500 N~pe-----~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~----l~-~dvdl~~LA~~t~G~S-----gaDL~ 564 (802)
+..+ .+|+||.| ||. .|.++.|+.+++..||+.+.+... +. .+..+..++..+.+|- +.-..
T Consensus 324 T~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAI 400 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAV 400 (852)
T ss_pred CHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHH
Confidence 9753 48999999 995 899999999999999876654322 11 3555777787776653 45566
Q ss_pred HHHHHHHHHHHHh-CCCccCHHHHHHHH
Q 003696 565 NLVNIAAIKAAVD-GGEKLTATELEFAK 591 (802)
Q Consensus 565 nLvn~Aa~~Aa~~-~~~~It~edle~A~ 591 (802)
.++.+|+...... ....+..++++..+
T Consensus 401 dlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 401 SLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 7888877655443 34445555554443
No 90
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.66 E-value=4.8e-15 Score=152.30 Aligned_cols=203 Identities=18% Similarity=0.231 Sum_probs=135.4
Q ss_pred CCcccccC--CHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhh
Q 003696 355 KTFKDVKG--CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 429 (802)
Q Consensus 355 ~tFdDViG--~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e 429 (802)
.+|+++++ .+.+.+.+++++. ...+.+++|+||||||||++|+++++++ +.++++++++++..
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 57888773 4456666655543 2235689999999999999999999876 57899999888764
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCC---
Q 003696 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILD--- 506 (802)
Q Consensus 430 ~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD--- 506 (802)
.. .+++.... .+.+|+|||+|.+... ......|...++........+|++++..+..++
T Consensus 80 ~~--------~~~~~~~~--~~~lLvIDdi~~l~~~--------~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~ 141 (226)
T TIGR03420 80 AD--------PEVLEGLE--QADLVCLDDVEAIAGQ--------PEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRL 141 (226)
T ss_pred hH--------HHHHhhcc--cCCEEEEeChhhhcCC--------hHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCccc
Confidence 32 23333222 2469999999998432 111233333333322233445555554454432
Q ss_pred hhhcCCCcc--ceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 003696 507 PALTRPGRF--DRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 583 (802)
Q Consensus 507 ~ALlRpGRF--dr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It 583 (802)
+.+.+ || ..++.+++|+.+++..+++.++.+.... ++..+..|++..+ .+.+++.++++++...+.. ++..|+
T Consensus 142 ~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~~~~~~~-~~~~i~ 217 (226)
T TIGR03420 142 PDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDALDRASLA-AKRKIT 217 (226)
T ss_pred HHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHH-hCCCCC
Confidence 56665 66 4689999999999999999887655443 3334778888644 5899999999987765555 446799
Q ss_pred HHHHHHHH
Q 003696 584 ATELEFAK 591 (802)
Q Consensus 584 ~edle~A~ 591 (802)
.+.+.+.+
T Consensus 218 ~~~~~~~~ 225 (226)
T TIGR03420 218 IPFVKEVL 225 (226)
T ss_pred HHHHHHHh
Confidence 88776553
No 91
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.66 E-value=1.9e-15 Score=160.72 Aligned_cols=200 Identities=22% Similarity=0.241 Sum_probs=140.1
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC------eeE
Q 003696 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------FFY 421 (802)
Q Consensus 348 ~~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p------fi~ 421 (802)
+..++.+.+|+|++|++.+.+.|+..+. +...| ++|||||||||||+.|+++|++++.| +..
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~-----------~~~lp-~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALL-----------RRILP-HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHh-----------hcCCc-eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 5667888999999999999999988776 22334 89999999999999999999999773 233
Q ss_pred eeccchhhhhhhhhHHHHHHHHHHHHh------cCC----cEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCC
Q 003696 422 RAGSEFEEMFVGVGARRVRSLFQAAKK------KAP----CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNE 491 (802)
Q Consensus 422 is~se~~e~~vG~~~k~vr~lF~~Ar~------~aP----~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~ 491 (802)
.+.|+....- ....++. -|.+... ..| .|++|||+|.| +..+++.|.+.||.+...
T Consensus 94 lnaSderGis--vvr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm----------tsdaq~aLrr~mE~~s~~- 159 (346)
T KOG0989|consen 94 LNASDERGIS--VVREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSM----------TSDAQAALRRTMEDFSRT- 159 (346)
T ss_pred hccccccccc--chhhhhc-CHHHHhhccccccCCCCCcceEEEEechhhh----------hHHHHHHHHHHHhccccc-
Confidence 3444443321 1122221 2222221 112 59999999999 467889999999986654
Q ss_pred CEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHhcCCCCCHHHHHHHHHHH
Q 003696 492 GIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDV-DVKAIARGTPGFNGADLANLVNIA 570 (802)
Q Consensus 492 ~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dv-dl~~LA~~t~G~SgaDL~nLvn~A 570 (802)
+.+|..||+++.|...+.+ |+ ..+.|+..+.+.....|+..+.+..+.-|. .+..|+..+.| +-++....++.+
T Consensus 160 -trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ait~Lqsl 234 (346)
T KOG0989|consen 160 -TRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAITTLQSL 234 (346)
T ss_pred -eEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHh
Confidence 4555668999999888887 76 467788888888888888888877766443 37778876554 444444444444
Q ss_pred HHHHHHhCCCccC
Q 003696 571 AIKAAVDGGEKLT 583 (802)
Q Consensus 571 a~~Aa~~~~~~It 583 (802)
.. .++.||
T Consensus 235 s~-----~gk~It 242 (346)
T KOG0989|consen 235 SL-----LGKRIT 242 (346)
T ss_pred hc-----cCcccc
Confidence 33 445555
No 92
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.66 E-value=2.6e-15 Score=162.59 Aligned_cols=207 Identities=20% Similarity=0.268 Sum_probs=138.2
Q ss_pred cccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccc
Q 003696 347 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 426 (802)
Q Consensus 347 ~~~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se 426 (802)
.+..+..+.+|+|++|++++++.++..+. .++.|..+||+||||+|||++|++++++.+.+++++++++
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVK-----------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 35567778899999999999999888775 3456777888999999999999999999999999999877
Q ss_pred hhhhhhhhhHHHHHHHHHHHH-hcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCC
Q 003696 427 FEEMFVGVGARRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (802)
Q Consensus 427 ~~e~~vG~~~k~vr~lF~~Ar-~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~L 505 (802)
.. .......+........ ...+++|+|||+|.+.. ....+.|...++.+. .++.+|.+||.+..+
T Consensus 79 -~~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~---------~~~~~~L~~~le~~~--~~~~~Ilt~n~~~~l 144 (316)
T PHA02544 79 -CR--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL---------ADAQRHLRSFMEAYS--KNCSFIITANNKNGI 144 (316)
T ss_pred -cc--HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC---------HHHHHHHHHHHHhcC--CCceEEEEcCChhhc
Confidence 21 2221122222222111 13468999999998832 123334444455433 455777788999999
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc-------CCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 003696 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD-------KPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 577 (802)
Q Consensus 506 D~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~-------~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~ 577 (802)
++++++ ||. .+.++.|+.+++.++++.++.. .... .+..+..+++... .|++.+++.....+.
T Consensus 145 ~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~----~d~r~~l~~l~~~~~-- 215 (316)
T PHA02544 145 IEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNF----PDFRRTINELQRYAS-- 215 (316)
T ss_pred hHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC----CCHHHHHHHHHHHHc--
Confidence 999997 884 7899999999998887754332 1211 1223466665443 355555554443332
Q ss_pred CCCccCHHHHH
Q 003696 578 GGEKLTATELE 588 (802)
Q Consensus 578 ~~~~It~edle 588 (802)
...++.+++.
T Consensus 216 -~~~i~~~~l~ 225 (316)
T PHA02544 216 -TGKIDAGILS 225 (316)
T ss_pred -cCCCCHHHHH
Confidence 2456766654
No 93
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.2e-15 Score=176.60 Aligned_cols=203 Identities=19% Similarity=0.300 Sum_probs=151.7
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC------------
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p------------ 418 (802)
++.+.+|+||+|++++++.|+..+. .+++|+.+|||||+|+|||++|+++|+.+++.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~-----------~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAID-----------TGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 4456799999999999999988876 35678899999999999999999999998653
Q ss_pred ------------eeEeeccchhhhhhhhhHHHHHHHHHHHHhc----CCcEEEEcchhhhccccccCCcchHHHHHHHHH
Q 003696 419 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 482 (802)
Q Consensus 419 ------------fi~is~se~~e~~vG~~~k~vr~lF~~Ar~~----aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~ 482 (802)
++++++.+ ..+...++++...+... ...|+||||+|.|. ....|.||.
T Consensus 78 ~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt----------~~a~naLLk 141 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS----------TNAFNALLK 141 (576)
T ss_pred HHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC----------HHHHHHHHH
Confidence 22222211 12345677776665432 23599999999993 467899999
Q ss_pred HhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHH
Q 003696 483 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 561 (802)
Q Consensus 483 eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~Sga 561 (802)
.|+. ....+++|.+|+.++.|.+.+++ |+ .++.|..++..+....++..+++.... ++..+..|++.+.| +.+
T Consensus 142 ~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr 215 (576)
T PRK14965 142 TLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMR 215 (576)
T ss_pred HHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 9985 44567777888889999999886 66 578899999999999998888776554 34457778887775 778
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003696 562 DLANLVNIAAIKAAVDGGEKLTATELEFA 590 (802)
Q Consensus 562 DL~nLvn~Aa~~Aa~~~~~~It~edle~A 590 (802)
++.++++++..+. ...||.+++...
T Consensus 216 ~al~~Ldqliay~----g~~It~edV~~l 240 (576)
T PRK14965 216 DSLSTLDQVLAFC----GDAVGDDDVAEL 240 (576)
T ss_pred HHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 8888887665443 245888877654
No 94
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.66 E-value=1.7e-15 Score=172.75 Aligned_cols=302 Identities=17% Similarity=0.223 Sum_probs=187.1
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc-----CCCeeEeeccchh
Q 003696 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEFE 428 (802)
Q Consensus 354 ~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea-----g~pfi~is~se~~ 428 (802)
..||++.+.-+.-...+..+..+..+| | ....+++||||+|||||+|++|+++++ +..++++++.+|.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~------~-~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNP------G-ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCc------C-cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 358999663332222332232223332 1 123469999999999999999999854 5778899999888
Q ss_pred hhhhhhhHH---HHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCC-
Q 003696 429 EMFVGVGAR---RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI- 504 (802)
Q Consensus 429 e~~vG~~~k---~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~- 504 (802)
..+...... .+..+.... ..+.+|+|||++.+.++ ..+...|+..++......+.+||++...|..
T Consensus 184 ~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~k--------~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 184 RKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSYK--------EKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred HHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccCC--------HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 776543222 122221111 34579999999998543 2334444444444444445566665555643
Q ss_pred --CChhhcCCCccce--EEEccCCCHHHHHHHHHHHhccCCC---CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 003696 505 --LDPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPL---ADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 577 (802)
Q Consensus 505 --LD~ALlRpGRFdr--~I~v~lPd~eeR~~ILk~~l~~~~l---~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~ 577 (802)
+++.|.+ ||.. .+.+.+|+.++|.+||+..++...+ -++..+..|+..+.| +++.|.++++.+...+...
T Consensus 254 ~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~ 330 (450)
T PRK14087 254 NGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQN 330 (450)
T ss_pred hhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcc
Confidence 5677777 8865 7888999999999999999976543 234447788888876 8999999999888666554
Q ss_pred C-CCccCHHHHHHHHHHHhcccccccccchHHHHHhHHHhhhhhHHHHHhcCCCCcceEEEEecCCCcccceEeccCCCc
Q 003696 578 G-GEKLTATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDE 656 (802)
Q Consensus 578 ~-~~~It~edle~A~~ril~g~~~k~~~ls~~~~~~vA~HEaGHAlva~~~~~~~~v~kvtI~pRg~alG~~~~~p~~~~ 656 (802)
. ...||.+.+.+++..+.. .+.+...+..-.+.+..++.....-+-.... .+-...||.-+ +|+-.+ .
T Consensus 331 ~~~~~it~~~v~~~l~~~~~-~~~~~~t~~~I~~~Va~~~~i~~~dl~s~~R-----~~~i~~~Rqia----myL~r~-~ 399 (450)
T PRK14087 331 PEEKIITIEIVSDLFRDIPT-SKLGILNVKKIKEVVSEKYGISVNAIDGKAR-----SKSIVTARHIA----MYLTKE-I 399 (450)
T ss_pred cCCCCCCHHHHHHHHhhccc-cccCCCCHHHHHHHHHHHcCCCHHHHhCCCC-----CccccHHHHHH----HHHHHH-H
Confidence 3 368999999999887632 1222223333333333344444433321111 12244566654 222221 1
Q ss_pred ccccHHHHHHhHHHHhhHHHHHHHHhCCCCCCcc
Q 003696 657 TSVSQKQLLARLDVCMGGRVAEELIFGRDHITTG 690 (802)
Q Consensus 657 ~~~t~~~l~~~I~v~LgGraAEel~fG~~~vtsG 690 (802)
+..| +..|...+|||-+-.|+++...+...
T Consensus 400 t~~s----l~~IG~~FggrdHsTV~~a~~ki~~~ 429 (450)
T PRK14087 400 LNHT----LAQIGEEFGGRDHTTVINAERKIEKM 429 (450)
T ss_pred cCCC----HHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 1122 34599999999999999986554443
No 95
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.65 E-value=4.9e-15 Score=176.86 Aligned_cols=213 Identities=23% Similarity=0.270 Sum_probs=144.6
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccch
Q 003696 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (802)
Q Consensus 348 ~~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~ 427 (802)
+....++.+|+|++|++........+...+.. .+.| ++|||||||||||++|+++|+..+.+|+.+++...
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~--------~~~~-slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~ 88 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKA--------DRVG-SLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc--------CCCc-eEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh
Confidence 33455668999999999987543333332221 2333 79999999999999999999999999998887531
Q ss_pred hhhhhhhhHHHHHHHHHHHH-----hcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCC-
Q 003696 428 EEMFVGVGARRVRSLFQAAK-----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL- 501 (802)
Q Consensus 428 ~e~~vG~~~k~vr~lF~~Ar-----~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~- 501 (802)
+.+.+++.+..+. .....+|||||||.+. ...++.|+..++ +..+++|++|+.
T Consensus 89 -------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln----------~~qQdaLL~~lE----~g~IiLI~aTTen 147 (725)
T PRK13341 89 -------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFN----------KAQQDALLPWVE----NGTITLIGATTEN 147 (725)
T ss_pred -------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC----------HHHHHHHHHHhc----CceEEEEEecCCC
Confidence 1123344444332 1345699999999983 234556776665 345777776643
Q ss_pred -CCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc-------CCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHH
Q 003696 502 -PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD-------KPLA-DDVDVKAIARGTPGFNGADLANLVNIAAI 572 (802)
Q Consensus 502 -pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~-------~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~ 572 (802)
...+++++++ |+ ..+.+++++.+++..|++.++.. .... ++..+..|++...| +.+++.++++.+..
T Consensus 148 p~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~ 223 (725)
T PRK13341 148 PYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVE 223 (725)
T ss_pred hHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 2468889887 64 56899999999999999998862 2222 33347888887754 77888888887664
Q ss_pred HHHHhCC--CccCHHHHHHHHHHH
Q 003696 573 KAAVDGG--EKLTATELEFAKDRI 594 (802)
Q Consensus 573 ~Aa~~~~--~~It~edle~A~~ri 594 (802)
.+...+. ..||.+++++++.+.
T Consensus 224 ~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 224 STPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred hcccCCCCceeccHHHHHHHHHHh
Confidence 3322222 237888888887663
No 96
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.65 E-value=9.5e-15 Score=151.23 Aligned_cols=203 Identities=15% Similarity=0.124 Sum_probs=135.2
Q ss_pred CCCCCCccccc--CCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeecc
Q 003696 351 EKNVKTFKDVK--GCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 425 (802)
Q Consensus 351 ~~~~~tFdDVi--G~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~s 425 (802)
-.+..+|++++ +.+.+...++++.. +...+.+++|+||||||||+||+++++++ +.+++++++.
T Consensus 11 ~~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 11 PPPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CCChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 34456899977 33555555555443 22334589999999999999999999875 6788898887
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCE-EEEeecCCCC-
Q 003696 426 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGI-ILMAATNLPD- 503 (802)
Q Consensus 426 e~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~V-IVIaATN~pe- 503 (802)
++.... . ....+.+|+|||+|.+.. .... .|+..++....+... ++++++..|.
T Consensus 80 ~~~~~~------------~--~~~~~~~liiDdi~~l~~-------~~~~---~L~~~~~~~~~~~~~~vl~~~~~~~~~ 135 (227)
T PRK08903 80 SPLLAF------------D--FDPEAELYAVDDVERLDD-------AQQI---ALFNLFNRVRAHGQGALLVAGPAAPLA 135 (227)
T ss_pred HhHHHH------------h--hcccCCEEEEeChhhcCc-------hHHH---HHHHHHHHHHHcCCcEEEEeCCCCHHh
Confidence 754321 1 122356999999998832 1223 344444443344443 4444443332
Q ss_pred -CCChhhcCCCcc--ceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 003696 504 -ILDPALTRPGRF--DRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG 579 (802)
Q Consensus 504 -~LD~ALlRpGRF--dr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~ 579 (802)
.+.+.+.+ || ...+.+++|+.+++..+++.+..+..+. ++..+..|++..+| +.+++.++++.....|... +
T Consensus 136 ~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~-~ 211 (227)
T PRK08903 136 LPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQ-K 211 (227)
T ss_pred CCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHh-C
Confidence 34566665 66 4689999999999999999877665444 33347788886554 8999999999765545444 4
Q ss_pred CccCHHHHHHHHH
Q 003696 580 EKLTATELEFAKD 592 (802)
Q Consensus 580 ~~It~edle~A~~ 592 (802)
..||...+.+++.
T Consensus 212 ~~i~~~~~~~~l~ 224 (227)
T PRK08903 212 RPVTLPLLREMLA 224 (227)
T ss_pred CCCCHHHHHHHHh
Confidence 7899988877653
No 97
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.64 E-value=1.9e-14 Score=160.26 Aligned_cols=222 Identities=20% Similarity=0.249 Sum_probs=153.3
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc-----CCCeeEeeccchhhh
Q 003696 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEEM 430 (802)
Q Consensus 356 tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea-----g~pfi~is~se~~e~ 430 (802)
..+.++|.++..++|...+..... ...|.+++|+||||||||++++.+++++ ++.+++++|......
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 456789999887777776643211 2334579999999999999999999876 578999988654221
Q ss_pred ----------hhh-------hh-HHHHHHHHHHHHh-cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCC
Q 003696 431 ----------FVG-------VG-ARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNE 491 (802)
Q Consensus 431 ----------~vG-------~~-~k~vr~lF~~Ar~-~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~ 491 (802)
..+ .. ...+..+.+.... ..+.||+|||+|.+.... ....+..|+..++... ..
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~------~~~~l~~l~~~~~~~~-~~ 172 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE------GNDVLYSLLRAHEEYP-GA 172 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC------CchHHHHHHHhhhccC-CC
Confidence 111 01 1222333333332 456899999999996211 2356777777666543 23
Q ss_pred CEEEEeecCCCC---CCChhhcCCCccc-eEEEccCCCHHHHHHHHHHHhccCC---CCCcccHHHHHhcCCC--CCHHH
Q 003696 492 GIILMAATNLPD---ILDPALTRPGRFD-RHIVVPNPDVRGRQEILELYLQDKP---LADDVDVKAIARGTPG--FNGAD 562 (802)
Q Consensus 492 ~VIVIaATN~pe---~LD~ALlRpGRFd-r~I~v~lPd~eeR~~ILk~~l~~~~---l~~dvdl~~LA~~t~G--~SgaD 562 (802)
++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++.++.... .-++..++.+++.+.+ ...+.
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~ 250 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARV 250 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHH
Confidence 677888888653 56777665 553 5789999999999999999886421 1233346677776633 23456
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003696 563 LANLVNIAAIKAAVDGGEKLTATELEFAKDRI 594 (802)
Q Consensus 563 L~nLvn~Aa~~Aa~~~~~~It~edle~A~~ri 594 (802)
+.+++..|+..|..++...|+.+|+..|++++
T Consensus 251 a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 251 AIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 66888889889988888999999999999987
No 98
>PRK06893 DNA replication initiation factor; Validated
Probab=99.64 E-value=9.4e-15 Score=152.46 Aligned_cols=209 Identities=14% Similarity=0.179 Sum_probs=133.8
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhh
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 429 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e 429 (802)
+..+|++++|.+... .+..+... +.. ...| .++||||||||||+|++|+|+++ +....+++......
T Consensus 11 ~~~~fd~f~~~~~~~-~~~~~~~~------~~~--~~~~-~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~ 80 (229)
T PRK06893 11 DDETLDNFYADNNLL-LLDSLRKN------FID--LQQP-FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY 80 (229)
T ss_pred CcccccccccCChHH-HHHHHHHH------hhc--cCCC-eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh
Confidence 446899999876432 11112111 111 1122 58999999999999999999986 44555555533211
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCC-CEEEEeecCCCCCCC--
Q 003696 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNE-GIILMAATNLPDILD-- 506 (802)
Q Consensus 430 ~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~-~VIVIaATN~pe~LD-- 506 (802)
. ..++++..+ ...+|+|||++.+.+.. ..+..+..+++. ...+. .++|++++..|..++
T Consensus 81 ~--------~~~~~~~~~--~~dlLilDDi~~~~~~~-----~~~~~l~~l~n~---~~~~~~~illits~~~p~~l~~~ 142 (229)
T PRK06893 81 F--------SPAVLENLE--QQDLVCLDDLQAVIGNE-----EWELAIFDLFNR---IKEQGKTLLLISADCSPHALSIK 142 (229)
T ss_pred h--------hHHHHhhcc--cCCEEEEeChhhhcCCh-----HHHHHHHHHHHH---HHHcCCcEEEEeCCCChHHcccc
Confidence 1 112233222 34799999999985432 112334444443 33333 355666777777665
Q ss_pred -hhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 003696 507 -PALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 584 (802)
Q Consensus 507 -~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~ 584 (802)
+.+.+..++...+.++.||.++|.+|++..+....+. ++..+..|+++.+| +.+.+.++++... .+.....+.||.
T Consensus 143 ~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~-~~~~~~~~~it~ 220 (229)
T PRK06893 143 LPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLD-KASLQAQRKLTI 220 (229)
T ss_pred chhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH-HHHHhcCCCCCH
Confidence 7787733445688999999999999999888765554 34447788888875 8888999988764 344444457999
Q ss_pred HHHHHHH
Q 003696 585 TELEFAK 591 (802)
Q Consensus 585 edle~A~ 591 (802)
+.+++++
T Consensus 221 ~~v~~~L 227 (229)
T PRK06893 221 PFVKEIL 227 (229)
T ss_pred HHHHHHh
Confidence 8887664
No 99
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.1e-14 Score=161.43 Aligned_cols=211 Identities=18% Similarity=0.273 Sum_probs=146.5
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccch---
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF--- 427 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~--- 427 (802)
+..+.+|+||+|++.+++.+...+. .++.|+++|||||||+|||++|+++|+.++.+.....+..+
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~-----------~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIE-----------NNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 4556799999999999888887775 34677899999999999999999999987653221111100
Q ss_pred ---hhhhhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecC
Q 003696 428 ---EEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (802)
Q Consensus 428 ---~e~~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN 500 (802)
.+.....+...++++++.+.. ..+.||+|||+|.+. ...++.|+..++. .....++|.+|+
T Consensus 79 ~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~----------~~~~~~ll~~le~--~~~~~~~Il~~~ 146 (367)
T PRK14970 79 IFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS----------SAAFNAFLKTLEE--PPAHAIFILATT 146 (367)
T ss_pred eEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC----------HHHHHHHHHHHhC--CCCceEEEEEeC
Confidence 000111223567777776543 234699999999883 3457788888875 233455566677
Q ss_pred CCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 003696 501 LPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG 579 (802)
Q Consensus 501 ~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~ 579 (802)
.+..+.+++.+ |+ ..+.++.|+.++...++...+.+.+.. ++..+..++..+.| +.+.+.+.++....++ +.
T Consensus 147 ~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~---~~ 219 (367)
T PRK14970 147 EKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC---GK 219 (367)
T ss_pred CcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc---CC
Confidence 77888888876 66 468999999999999999888776653 44557778877654 6677777766555443 33
Q ss_pred CccCHHHHHHHHH
Q 003696 580 EKLTATELEFAKD 592 (802)
Q Consensus 580 ~~It~edle~A~~ 592 (802)
. ||.++++..+.
T Consensus 220 ~-it~~~v~~~~~ 231 (367)
T PRK14970 220 N-ITRQAVTENLN 231 (367)
T ss_pred C-CCHHHHHHHhC
Confidence 3 88888775543
No 100
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=5.9e-15 Score=171.59 Aligned_cols=204 Identities=17% Similarity=0.234 Sum_probs=149.3
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC-----------
Q 003696 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP----------- 418 (802)
Q Consensus 350 ~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p----------- 418 (802)
....+.+|+||+|++.+++.|...+. ..+.|+++||+||||+|||++|+++|+.+.+.
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~-----------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 35566799999999999999888775 45778899999999999999999999987541
Q ss_pred -------------eeEeeccchhhhhhhhhHHHHHHHHHHHHhc----CCcEEEEcchhhhccccccCCcchHHHHHHHH
Q 003696 419 -------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 481 (802)
Q Consensus 419 -------------fi~is~se~~e~~vG~~~k~vr~lF~~Ar~~----aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL 481 (802)
++.++++. ..+...+|++...+... ...|++|||+|.|. ....+.||
T Consensus 77 ~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt----------~~A~NaLL 140 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS----------TSAWNALL 140 (605)
T ss_pred HHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC----------HHHHHHHH
Confidence 12222211 12334567666655432 23599999999983 35678899
Q ss_pred HHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCH
Q 003696 482 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNG 560 (802)
Q Consensus 482 ~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~Sg 560 (802)
..|+. +...+++|.+|+.+..|.+++++ |+ ..+.+++|+..+...+++..+.+.+.. ++..+..++..+.| +.
T Consensus 141 KtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dl 214 (605)
T PRK05896 141 KTLEE--PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SL 214 (605)
T ss_pred HHHHh--CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 98885 44567777788889999999887 77 478999999999999999988765533 34446777777765 77
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003696 561 ADLANLVNIAAIKAAVDGGEKLTATELEFA 590 (802)
Q Consensus 561 aDL~nLvn~Aa~~Aa~~~~~~It~edle~A 590 (802)
+++.++++.+... .+ ..|+.+++...
T Consensus 215 R~AlnlLekL~~y---~~-~~It~e~V~el 240 (605)
T PRK05896 215 RDGLSILDQLSTF---KN-SEIDIEDINKT 240 (605)
T ss_pred HHHHHHHHHHHhh---cC-CCCCHHHHHHH
Confidence 8888888765433 23 34888877664
No 101
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=9.5e-15 Score=172.79 Aligned_cols=211 Identities=24% Similarity=0.315 Sum_probs=153.8
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeE---eeccc
Q 003696 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY---RAGSE 426 (802)
Q Consensus 350 ~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~---is~se 426 (802)
.+.++.+|+||+|++.+++.|+..+. ..++++.+||+||+|||||++|+++|+.+.++-.. -.|..
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~-----------~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIK-----------SNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 45567799999999999999988886 35678899999999999999999999988663110 01111
Q ss_pred h----------hhh--hhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccC
Q 003696 427 F----------EEM--FVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN 490 (802)
Q Consensus 427 ~----------~e~--~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~ 490 (802)
. .+. ....+...+|++.+.+.. ....|++|||+|.|. ...++.||..|+. +.
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT----------~~A~NALLKtLEE--PP 146 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS----------KSAFNALLKTLEE--PP 146 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC----------HHHHHHHHHHhhc--CC
Confidence 1 000 001234557777776653 234699999999993 4578899999985 45
Q ss_pred CCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHH
Q 003696 491 EGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNI 569 (802)
Q Consensus 491 ~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~ 569 (802)
..+++|.+|+.++.|.+.+++ |+ .++.+.+|+.++...+++..+.+.... .+..+..+++.+.| +.+++.++++.
T Consensus 147 ~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLek 222 (725)
T PRK07133 147 KHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQ 222 (725)
T ss_pred CceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 567778888889999999887 77 488999999999999999888765544 23346777777764 77888888877
Q ss_pred HHHHHHHhCCCccCHHHHHHHH
Q 003696 570 AAIKAAVDGGEKLTATELEFAK 591 (802)
Q Consensus 570 Aa~~Aa~~~~~~It~edle~A~ 591 (802)
+... +...|+.+++..++
T Consensus 223 l~~y----~~~~It~e~V~ell 240 (725)
T PRK07133 223 VSIF----GNNKITLKNVEELF 240 (725)
T ss_pred HHHh----ccCCCCHHHHHHHH
Confidence 6543 23458888886653
No 102
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.5e-14 Score=164.98 Aligned_cols=204 Identities=19% Similarity=0.224 Sum_probs=145.7
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC------------
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p------------ 418 (802)
...+.+|+||+|++.++..|+..+. .+++|+.+|||||||+|||++|+++|+.+.+.
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~-----------~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALR-----------FNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 3456799999999999998888776 35678899999999999999999999987542
Q ss_pred -------------eeEeeccchhhhhhhhhHHHHHHHHHHHH----hcCCcEEEEcchhhhccccccCCcchHHHHHHHH
Q 003696 419 -------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 481 (802)
Q Consensus 419 -------------fi~is~se~~e~~vG~~~k~vr~lF~~Ar----~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL 481 (802)
++.+++.. ..+...++++-+... .....||||||+|.+. ...++.|+
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt----------~~~~n~LL 142 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGAS------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT----------KEAFNSLL 142 (451)
T ss_pred HHHHHHhcCCCCceEEeeccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC----------HHHHHHHH
Confidence 22222211 011234444433332 2345799999999993 35678899
Q ss_pred HHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCH
Q 003696 482 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNG 560 (802)
Q Consensus 482 ~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~Sg 560 (802)
..|+.. ...+++|.+||.+..|.+++++ |+ ..+.++.++.++...+++..+++.+.. ++..+..|+..+.| +.
T Consensus 143 k~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dl 216 (451)
T PRK06305 143 KTLEEP--PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SL 216 (451)
T ss_pred HHhhcC--CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 998863 3466777777888899999887 77 578999999999999999888765543 34457788887754 66
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003696 561 ADLANLVNIAAIKAAVDGGEKLTATELEFAK 591 (802)
Q Consensus 561 aDL~nLvn~Aa~~Aa~~~~~~It~edle~A~ 591 (802)
+++.++++..... .+ ..|+.++++.++
T Consensus 217 r~a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 217 RDAESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 6666666654332 23 459998887665
No 103
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.62 E-value=7.6e-15 Score=164.65 Aligned_cols=189 Identities=20% Similarity=0.303 Sum_probs=130.8
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCee---------------
Q 003696 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF--------------- 420 (802)
Q Consensus 356 tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi--------------- 420 (802)
.|++|+|++.+++.|+..+..-+. .+...+.+.|+++||+||||+|||++|+++|+.+.+.--
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 599999999999999999874332 233456678999999999999999999999998755310
Q ss_pred Eeeccchhh---hhhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCE
Q 003696 421 YRAGSEFEE---MFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGI 493 (802)
Q Consensus 421 ~is~se~~e---~~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~V 493 (802)
.-+.+++.. .-...+...+|++++.+.. ....|+||||+|.+. ....|.||..|+.. ..++
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~----------~~aanaLLk~LEep--~~~~ 148 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT----------ERAANALLKAVEEP--PPRT 148 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC----------HHHHHHHHHHhhcC--CCCC
Confidence 000111100 0011234567888887754 234699999999993 45668899999853 3344
Q ss_pred EEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHH
Q 003696 494 ILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLAN 565 (802)
Q Consensus 494 IVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~n 565 (802)
++|.+|+.++.|.+++++ |+ ..+.|++|+.++..++|.... .. +......+++.+.|..+..+.-
T Consensus 149 ~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~-~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 149 VWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GV-DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred eEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 444455558999999997 77 689999999999888876322 22 2334667888888866654433
No 104
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.7e-14 Score=169.27 Aligned_cols=213 Identities=19% Similarity=0.233 Sum_probs=155.0
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEee----
Q 003696 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA---- 423 (802)
Q Consensus 348 ~~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is---- 423 (802)
+..++.+.+|+||+|++.+++.|...+. .+++|+++||+||+|+|||++|+++|+.+++.....+
T Consensus 14 la~KyRP~~f~dliGq~~~v~~L~~~~~-----------~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~ 82 (598)
T PRK09111 14 LARKYRPQTFDDLIGQEAMVRTLTNAFE-----------TGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPT 82 (598)
T ss_pred HHhhhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCc
Confidence 3345667899999999999999988776 4678899999999999999999999998875421111
Q ss_pred ---------c--------cchhhhh--hhhhHHHHHHHHHHHHhc----CCcEEEEcchhhhccccccCCcchHHHHHHH
Q 003696 424 ---------G--------SEFEEMF--VGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQL 480 (802)
Q Consensus 424 ---------~--------se~~e~~--vG~~~k~vr~lF~~Ar~~----aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqL 480 (802)
| .++.+.. ...+...+|++.+.++.. ...|+||||+|.+. ....|.|
T Consensus 83 ~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls----------~~a~naL 152 (598)
T PRK09111 83 IDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS----------TAAFNAL 152 (598)
T ss_pred cccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC----------HHHHHHH
Confidence 0 1111100 012345677777766532 34699999999993 4678899
Q ss_pred HHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCC
Q 003696 481 LVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFN 559 (802)
Q Consensus 481 L~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~S 559 (802)
|..|+.. ...+++|.+|+.++.+.+.+++ |+ ..+.+..|+.++...+++..+++.... ++..+..|++.+.| +
T Consensus 153 LKtLEeP--p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-d 226 (598)
T PRK09111 153 LKTLEEP--PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-S 226 (598)
T ss_pred HHHHHhC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999853 3456666667777778888876 76 578999999999999999988776554 33456777877765 8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003696 560 GADLANLVNIAAIKAAVDGGEKLTATELEFAK 591 (802)
Q Consensus 560 gaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~ 591 (802)
.+++.++++++..+ +...||.++++..+
T Consensus 227 lr~al~~Ldkli~~----g~g~It~e~V~~ll 254 (598)
T PRK09111 227 VRDGLSLLDQAIAH----GAGEVTAEAVRDML 254 (598)
T ss_pred HHHHHHHHHHHHhh----cCCCcCHHHHHHHh
Confidence 88888888876544 34579998887654
No 105
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.6e-14 Score=166.90 Aligned_cols=203 Identities=20% Similarity=0.268 Sum_probs=150.1
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC------------
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p------------ 418 (802)
+..+.+|+||+|++.+++.|+..+. .+++|+.+|||||||+|||++|+++|+.+.++
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~-----------~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALD-----------NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 4566799999999999999988876 45688889999999999999999999987431
Q ss_pred ------------eeEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHH
Q 003696 419 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 482 (802)
Q Consensus 419 ------------fi~is~se~~e~~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~ 482 (802)
++.+++++ ..+...++++...+.. ....|++|||+|.+ ....+|.||.
T Consensus 76 ~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L----------t~~A~NALLK 139 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML----------TKEAFNALLK 139 (535)
T ss_pred HHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC----------CHHHHHHHHH
Confidence 22222211 1123566666655432 12359999999999 3578899999
Q ss_pred HhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHH
Q 003696 483 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 561 (802)
Q Consensus 483 eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~Sga 561 (802)
.|+.. ...+.+|.+|+.+..|.+++++ |+ .+++|.+++.++....++..+++.+.. ++..+..|++...| +.+
T Consensus 140 ~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR 213 (535)
T PRK08451 140 TLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLR 213 (535)
T ss_pred HHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 99864 3445666666778999999987 75 688999999999999999888776544 34457778887665 888
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003696 562 DLANLVNIAAIKAAVDGGEKLTATELEFA 590 (802)
Q Consensus 562 DL~nLvn~Aa~~Aa~~~~~~It~edle~A 590 (802)
++.+++.++...+ ...||.+++...
T Consensus 214 ~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 214 DTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred HHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 8888888776554 346777766543
No 106
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.2e-14 Score=167.14 Aligned_cols=211 Identities=21% Similarity=0.278 Sum_probs=149.1
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCC-------CeeEe
Q 003696 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-------PFFYR 422 (802)
Q Consensus 350 ~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~-------pfi~i 422 (802)
.+.++.+|+||+|++.++..|+..+. ..++++.+|||||||+|||++|+.+|..+++ |+-.+
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~-----------~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVK-----------LQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 35566799999999999999888875 3567778999999999999999999998864 11110
Q ss_pred -ecc--------chhhh--hhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccc
Q 003696 423 -AGS--------EFEEM--FVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF 487 (802)
Q Consensus 423 -s~s--------e~~e~--~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~ 487 (802)
+|. ++.+. ....+...++.+...+.. ....|++|||+|.+. ...++.|+..++..
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt----------~~a~naLLk~LEep 146 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT----------KEAFNALLKTLEEP 146 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC----------HHHHHHHHHHHhcC
Confidence 110 11000 011223445665555442 234699999999883 45678889888853
Q ss_pred ccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHH
Q 003696 488 EQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANL 566 (802)
Q Consensus 488 ~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nL 566 (802)
...+++|.+|+.++.+.+++.+ |+ ..+.+++|+.++...+++.+++...+. ++..+..|+..+.| +.+++.++
T Consensus 147 --p~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~~ 220 (486)
T PRK14953 147 --PPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAASL 220 (486)
T ss_pred --CCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 3445666666778888888876 66 478999999999999999998876654 33346777877664 67888888
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHH
Q 003696 567 VNIAAIKAAVDGGEKLTATELEFAK 591 (802)
Q Consensus 567 vn~Aa~~Aa~~~~~~It~edle~A~ 591 (802)
++.+... +...||.++++.++
T Consensus 221 Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 221 LDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHh----cCCCcCHHHHHHHh
Confidence 8877643 34578888887654
No 107
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.5e-14 Score=168.81 Aligned_cols=209 Identities=18% Similarity=0.230 Sum_probs=150.3
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC-------eeEe-
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------FFYR- 422 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p-------fi~i- 422 (802)
+..+.+|+||+|++.+++.|+..+. .++.|+.+|||||||+|||++|+++|+.+++. +-.+
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~-----------~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIE-----------SNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 3456789999999999999988876 35678889999999999999999999988652 1111
Q ss_pred ecc--------chhhhhhh---hhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccc
Q 003696 423 AGS--------EFEEMFVG---VGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF 487 (802)
Q Consensus 423 s~s--------e~~e~~vG---~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~ 487 (802)
+|- ++.. +.| .+...++++.+.+.. ....|++|||+|.+ ....+|.||..++.
T Consensus 78 ~C~~i~~~~~~dv~~-idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L----------s~~a~naLLK~LEe- 145 (563)
T PRK06647 78 SCKSIDNDNSLDVIE-IDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML----------SNSAFNALLKTIEE- 145 (563)
T ss_pred HHHHHHcCCCCCeEE-ecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc----------CHHHHHHHHHhhcc-
Confidence 000 1100 011 223455565544332 34469999999999 34678899999884
Q ss_pred ccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHH
Q 003696 488 EQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANL 566 (802)
Q Consensus 488 ~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nL 566 (802)
+...+++|.+|+.++.|.+++++ |+. .+.+.+++.++...+++..++..... ++..+..|++.+.| +.+++.++
T Consensus 146 -pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alsl 220 (563)
T PRK06647 146 -PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTL 220 (563)
T ss_pred -CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 44567777777878889999887 774 68899999999999999888765544 34457778877665 78888888
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHH
Q 003696 567 VNIAAIKAAVDGGEKLTATELEFAK 591 (802)
Q Consensus 567 vn~Aa~~Aa~~~~~~It~edle~A~ 591 (802)
++++...+ ...||.+++..++
T Consensus 221 Ldklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 221 FDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHhhc----CCCCCHHHHHHHh
Confidence 88765442 3568888776643
No 108
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.62 E-value=9.1e-15 Score=178.18 Aligned_cols=201 Identities=22% Similarity=0.270 Sum_probs=142.5
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc----------CCCeeEe
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYR 422 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea----------g~pfi~i 422 (802)
...++++|+|.++. ++.++..|... ...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 173 r~~~l~~vigr~~e---i~~~i~iL~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 173 EQGKLDPVIGRDEE---IRRTIQVLQRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred hcCCCCcCCCCHHH---HHHHHHHHhcC---------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 34579999999986 44445444332 12479999999999999999999987 6788888
Q ss_pred eccchh--hhhhhhhHHHHHHHHHHHHh-cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeec
Q 003696 423 AGSEFE--EMFVGVGARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 499 (802)
Q Consensus 423 s~se~~--e~~vG~~~k~vr~lF~~Ar~-~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaAT 499 (802)
+.+.+. ..|.|..+++++.+|..+.. ..|+||||||+|.+.+.++..++ ....+-|... -.++.+.+||||
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~--~d~~~~lkp~----l~~g~l~~IgaT 314 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA--MDAGNMLKPA----LARGELHCVGAT 314 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc--hhHHHHhcch----hhcCCCeEEEcC
Confidence 888765 45888899999999998644 57899999999999765433221 2223333332 246789999999
Q ss_pred CCCC-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-----CcccHHHHHhcCCC-----CCHHHHH
Q 003696 500 NLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-----DDVDVKAIARGTPG-----FNGADLA 564 (802)
Q Consensus 500 N~pe-----~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-----~dvdl~~LA~~t~G-----~SgaDL~ 564 (802)
+..+ .+|+++.| ||+ .|.++.|+.+++..||+.+....... .+..+...+..+.+ +-+....
T Consensus 315 t~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi 391 (857)
T PRK10865 315 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAI 391 (857)
T ss_pred CCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHH
Confidence 9876 48999999 997 58899999999999998876543322 22233333333332 3344555
Q ss_pred HHHHHHHHHH
Q 003696 565 NLVNIAAIKA 574 (802)
Q Consensus 565 nLvn~Aa~~A 574 (802)
.++..++...
T Consensus 392 ~LiD~aaa~~ 401 (857)
T PRK10865 392 DLIDEAASSI 401 (857)
T ss_pred HHHHHHhccc
Confidence 6676665443
No 109
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.61 E-value=4e-14 Score=148.41 Aligned_cols=204 Identities=16% Similarity=0.167 Sum_probs=133.1
Q ss_pred CCCccccc-C-CHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchh
Q 003696 354 VKTFKDVK-G-CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 428 (802)
Q Consensus 354 ~~tFdDVi-G-~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~ 428 (802)
..+|++.+ | ...+...++.+.. .+ .+..++||||||||||+|++++++++ |..+.+++..+..
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~---~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALR---QE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRA 85 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHh
Confidence 45788877 4 4445555544432 11 12379999999999999999999875 3456666655432
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCC-EEEEeecCCCCC---
Q 003696 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEG-IILMAATNLPDI--- 504 (802)
Q Consensus 429 e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~-VIVIaATN~pe~--- 504 (802)
.. ..++++.... ..+|+|||+|.+.++. ..+..+..++..+ ..+++ .+++++++.|..
T Consensus 86 ~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~-----~~~~~lf~l~n~~---~e~g~~~li~ts~~~p~~l~~ 147 (235)
T PRK08084 86 WF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE-----LWEMAIFDLYNRI---LESGRTRLLITGDRPPRQLNL 147 (235)
T ss_pred hh--------hHHHHHHhhh--CCEEEEeChhhhcCCH-----HHHHHHHHHHHHH---HHcCCCeEEEeCCCChHHcCc
Confidence 21 1122222222 2589999999995431 1233344444332 22333 466666666665
Q ss_pred CChhhcCCCccc--eEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 003696 505 LDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEK 581 (802)
Q Consensus 505 LD~ALlRpGRFd--r~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~ 581 (802)
+.+.|++ |+. .++.+.+|+.+++.++++..+....+. ++.-++.|++..+| +.+.+.++++... .++...+..
T Consensus 148 ~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~-~~~l~~~~~ 223 (235)
T PRK08084 148 GLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLD-RASITAQRK 223 (235)
T ss_pred ccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHH-HHHHhcCCC
Confidence 5788887 886 589999999999999999877665444 34447888888875 8899999998753 344444567
Q ss_pred cCHHHHHHHH
Q 003696 582 LTATELEFAK 591 (802)
Q Consensus 582 It~edle~A~ 591 (802)
||.+.+++++
T Consensus 224 it~~~~k~~l 233 (235)
T PRK08084 224 LTIPFVKEIL 233 (235)
T ss_pred CCHHHHHHHH
Confidence 9998887764
No 110
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.61 E-value=7e-15 Score=168.28 Aligned_cols=207 Identities=20% Similarity=0.291 Sum_probs=160.0
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCe-------eEe-
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF-------FYR- 422 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pf-------i~i- 422 (802)
++++.+|+||+|++.+...|+..+. ..+++++.||+||.|||||++||.+|+.+++.- ..+
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~-----------~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALE-----------NGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHH-----------hCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 4556799999999999999999887 467788999999999999999999999887641 111
Q ss_pred -----e---ccchhhh--hhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc
Q 003696 423 -----A---GSEFEEM--FVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 488 (802)
Q Consensus 423 -----s---~se~~e~--~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~ 488 (802)
. ..++.+. -...+.+.+|++.+.+.- ....|.+|||+|.| +.+..|.||..++ +
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML----------S~~afNALLKTLE--E 145 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML----------SKQAFNALLKTLE--E 145 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh----------hHHHHHHHhcccc--c
Confidence 0 1122211 122345677887777643 34569999999999 4689999999998 5
Q ss_pred cCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHhcCCCCCHHHHHHHH
Q 003696 489 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADD-VDVKAIARGTPGFNGADLANLV 567 (802)
Q Consensus 489 ~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~d-vdl~~LA~~t~G~SgaDL~nLv 567 (802)
+...|++|.||..++.+++.+++ |+ .++.+..-+.++....|+..+.+..+..+ ..+..|++...| |.+|...++
T Consensus 146 PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslL 221 (515)
T COG2812 146 PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLL 221 (515)
T ss_pred CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHH
Confidence 67789999999999999999987 66 46778888999999999999988877644 447778888776 899999999
Q ss_pred HHHHHHHHHhCCCccCHHHHH
Q 003696 568 NIAAIKAAVDGGEKLTATELE 588 (802)
Q Consensus 568 n~Aa~~Aa~~~~~~It~edle 588 (802)
++|.... ...||.+.+.
T Consensus 222 Dq~i~~~----~~~It~~~v~ 238 (515)
T COG2812 222 DQAIAFG----EGEITLESVR 238 (515)
T ss_pred HHHHHcc----CCcccHHHHH
Confidence 9887654 2456665554
No 111
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.5e-14 Score=162.62 Aligned_cols=213 Identities=15% Similarity=0.218 Sum_probs=147.8
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeE---------
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY--------- 421 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~--------- 421 (802)
...+.+|+||+|++.+++.|+..+. .+++|+.+||+||||+|||++|+++|+.+.+.-..
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 4456789999999999999888776 46788899999999999999999999998763100
Q ss_pred -eecc--------------chhhhhhh---hhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHH
Q 003696 422 -RAGS--------------EFEEMFVG---VGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQ 479 (802)
Q Consensus 422 -is~s--------------e~~e~~vG---~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnq 479 (802)
-.|. ++.. +.+ .+...++++.+.+.. ....|+||||+|.+. ...++.
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~-~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~----------~~~~~~ 146 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISE-FDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS----------IAAFNA 146 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEe-ecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC----------HHHHHH
Confidence 0110 0000 111 123556666555532 223599999999993 356778
Q ss_pred HHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCC
Q 003696 480 LLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGF 558 (802)
Q Consensus 480 LL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~ 558 (802)
|+..++.. ....++|.+|+.+..+-+++.+ |+. .+++.+++.++....++..++..... ++..+..|+..+.|
T Consensus 147 LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g- 220 (397)
T PRK14955 147 FLKTLEEP--PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG- 220 (397)
T ss_pred HHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888743 3345555566667788888876 663 78899999999999998888765543 34446777777754
Q ss_pred CHHHHHHHHHHHHHHHHH-hCCCccCHHHHHHHH
Q 003696 559 NGADLANLVNIAAIKAAV-DGGEKLTATELEFAK 591 (802)
Q Consensus 559 SgaDL~nLvn~Aa~~Aa~-~~~~~It~edle~A~ 591 (802)
+.+.+.+.++.+..++.. .....||.++++..+
T Consensus 221 ~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 221 SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 777777777766655432 234689998887665
No 112
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.60 E-value=2.1e-14 Score=175.27 Aligned_cols=204 Identities=21% Similarity=0.273 Sum_probs=148.1
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc----------CCCeeEe
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYR 422 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea----------g~pfi~i 422 (802)
...+++.++|.++....+ +..|... ...+++|+||||||||++++++|..+ +.+++.+
T Consensus 168 ~~~~~~~~igr~~ei~~~---~~~l~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRT---IQVLSRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHHHHHHH---HHHHhcC---------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 344799999999864444 4433222 22478999999999999999999975 6778888
Q ss_pred eccchh--hhhhhhhHHHHHHHHHHHHh-cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeec
Q 003696 423 AGSEFE--EMFVGVGARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 499 (802)
Q Consensus 423 s~se~~--e~~vG~~~k~vr~lF~~Ar~-~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaAT 499 (802)
+...+. ..|.|..+++++.+|..+.. ..|+||||||||.+.+.+...+ .....+.|... ..+..+.+|++|
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~--~~d~~~~Lk~~----l~~g~i~~IgaT 309 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG--AMDAGNMLKPA----LARGELHCIGAT 309 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc--hhHHHHHhchh----hhcCceEEEEeC
Confidence 877765 46888889999999998865 4689999999999976432211 12233333332 346779999999
Q ss_pred CCCC-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-----CcccHHHHHhcCCCC-----CHHHHH
Q 003696 500 NLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-----DDVDVKAIARGTPGF-----NGADLA 564 (802)
Q Consensus 500 N~pe-----~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-----~dvdl~~LA~~t~G~-----SgaDL~ 564 (802)
+..+ .+|+++.| ||. .|.++.|+.+++..||+.+....... .+..+..++..+.+| -|.-..
T Consensus 310 t~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAi 386 (852)
T TIGR03346 310 TLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAI 386 (852)
T ss_pred cHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHH
Confidence 9874 47999999 996 58999999999999999876654433 233456666665544 355677
Q ss_pred HHHHHHHHHHHHh
Q 003696 565 NLVNIAAIKAAVD 577 (802)
Q Consensus 565 nLvn~Aa~~Aa~~ 577 (802)
.|+++|+..+...
T Consensus 387 dlld~a~a~~~~~ 399 (852)
T TIGR03346 387 DLIDEAAARIRME 399 (852)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888766544
No 113
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.60 E-value=1.3e-14 Score=156.65 Aligned_cols=209 Identities=27% Similarity=0.365 Sum_probs=138.3
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC---eeEeeccch
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---FFYRAGSEF 427 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p---fi~is~se~ 427 (802)
.-.+.+++|.+|+++...+ ..++.-+.. ..++| .++|+||||||||+|||.|+.....+ |+.+++..
T Consensus 131 rmRPktL~dyvGQ~hlv~q-~gllrs~ie-------q~~ip-SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~- 200 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQ-DGLLRSLIE-------QNRIP-SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN- 200 (554)
T ss_pred hcCcchHHHhcchhhhcCc-chHHHHHHH-------cCCCC-ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-
Confidence 3455689999999987655 223322211 23455 79999999999999999999988766 77776533
Q ss_pred hhhhhhhhHHHHHHHHHHHHh-----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecC--
Q 003696 428 EEMFVGVGARRVRSLFQAAKK-----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN-- 500 (802)
Q Consensus 428 ~e~~vG~~~k~vr~lF~~Ar~-----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN-- 500 (802)
...+.+|++|+.++. ....|||||||+.+.. ..+..+|-.+ .++.|++|+||.
T Consensus 201 ------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk----------sQQD~fLP~V----E~G~I~lIGATTEN 260 (554)
T KOG2028|consen 201 ------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK----------SQQDTFLPHV----ENGDITLIGATTEN 260 (554)
T ss_pred ------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh----------hhhhccccee----ccCceEEEecccCC
Confidence 334678999999875 3457999999999943 2223344333 356788898774
Q ss_pred CCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhc---c--C---CCC------CcccHHHHHhcCCCCCHHHHHHH
Q 003696 501 LPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ---D--K---PLA------DDVDVKAIARGTPGFNGADLANL 566 (802)
Q Consensus 501 ~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~---~--~---~l~------~dvdl~~LA~~t~G~SgaDL~nL 566 (802)
..-.|..+|++ |+ +++.+.....+....||.+... + . ++. ++.-++.++..+.|=..+.|..
T Consensus 261 PSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~- 336 (554)
T KOG2028|consen 261 PSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNA- 336 (554)
T ss_pred CccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHH-
Confidence 33478889987 66 6778888888888889887543 1 0 121 1223677888777744443332
Q ss_pred HHHHH-HHHHHhC---CCccCHHHHHHHHHH
Q 003696 567 VNIAA-IKAAVDG---GEKLTATELEFAKDR 593 (802)
Q Consensus 567 vn~Aa-~~Aa~~~---~~~It~edle~A~~r 593 (802)
++.++ +...+.+ ...++.+|+.+++.+
T Consensus 337 Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 337 LEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred HHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 23232 2223333 336888998888775
No 114
>PRK08727 hypothetical protein; Validated
Probab=99.59 E-value=9.2e-14 Score=145.49 Aligned_cols=179 Identities=22% Similarity=0.273 Sum_probs=120.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhcccccc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ 468 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~ 468 (802)
..++|+||+|||||+|++|+++++ +...++++..++... +.+.+.... ...+|+|||+|.+..+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~l~--~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR--------LRDALEALE--GRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh--------HHHHHHHHh--cCCEEEEeCcccccCChH-
Confidence 469999999999999999997764 666777776554332 233444333 346999999999865321
Q ss_pred CCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCC---ChhhcCCCcc--ceEEEccCCCHHHHHHHHHHHhccCCCC
Q 003696 469 WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL---DPALTRPGRF--DRHIVVPNPDVRGRQEILELYLQDKPLA 543 (802)
Q Consensus 469 ~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~L---D~ALlRpGRF--dr~I~v~lPd~eeR~~ILk~~l~~~~l~ 543 (802)
....+..++..+ ..+..-+|+++.+.|..+ ++.|.+ || ...+.+++|+.+++.+|++.++....+.
T Consensus 111 ----~~~~lf~l~n~~---~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~ 181 (233)
T PRK08727 111 ----DEVALFDFHNRA---RAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLA 181 (233)
T ss_pred ----HHHHHHHHHHHH---HHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 123333344333 233333555555567655 688887 87 4588999999999999999977655444
Q ss_pred -CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003696 544 -DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKD 592 (802)
Q Consensus 544 -~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~ 592 (802)
++..+..|++.+.| +.+.+.++++.....+...+ ..||.+.+++.+.
T Consensus 182 l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~~-~~it~~~~~~~l~ 229 (233)
T PRK08727 182 LDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAAK-RRVTVPFLRRVLE 229 (233)
T ss_pred CCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 34447788888774 66677777776554444444 5799988877664
No 115
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.8e-14 Score=166.22 Aligned_cols=210 Identities=16% Similarity=0.217 Sum_probs=147.5
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeE----ee
Q 003696 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY----RA 423 (802)
Q Consensus 348 ~~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~----is 423 (802)
+..+..+.+|++|+|++++++.|+..+. ..+.+.++||+||||||||++|+++|+.+++.... -.
T Consensus 6 l~~kyRP~~f~~liGq~~i~~~L~~~l~-----------~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14948 6 LHHKYRPQRFDELVGQEAIATTLKNALI-----------SNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP 74 (620)
T ss_pred HHHHhCCCcHhhccChHHHHHHHHHHHH-----------cCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC
Confidence 3345566899999999999999988886 24466789999999999999999999998763110 00
Q ss_pred cc--------------chh--hhhhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHH
Q 003696 424 GS--------------EFE--EMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 483 (802)
Q Consensus 424 ~s--------------e~~--e~~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~e 483 (802)
|. ++. +.....+...+|++...+.. ....|+||||+|.|. ...++.||..
T Consensus 75 Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt----------~~a~naLLK~ 144 (620)
T PRK14948 75 CGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS----------TAAFNALLKT 144 (620)
T ss_pred CcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC----------HHHHHHHHHH
Confidence 10 110 11112345678888877653 234699999999993 4678899999
Q ss_pred hcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHH
Q 003696 484 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGAD 562 (802)
Q Consensus 484 LDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaD 562 (802)
|+. ....+++|.+|+.++.+-+.+++ |+ ..+.|+.++.++....++..+.+.... .+..+..|++.+.| +.++
T Consensus 145 LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr~ 218 (620)
T PRK14948 145 LEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLRD 218 (620)
T ss_pred Hhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHH
Confidence 984 44567777778888888888876 76 578888898888888888777664433 33447778877765 5677
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHH
Q 003696 563 LANLVNIAAIKAAVDGGEKLTATELEF 589 (802)
Q Consensus 563 L~nLvn~Aa~~Aa~~~~~~It~edle~ 589 (802)
+.++++..... . ..||.+++..
T Consensus 219 A~~lLeklsL~---~--~~It~e~V~~ 240 (620)
T PRK14948 219 AESLLDQLSLL---P--GPITPEAVWD 240 (620)
T ss_pred HHHHHHHHHhc---c--CCCCHHHHHH
Confidence 77777654432 1 3577666543
No 116
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4.8e-14 Score=165.73 Aligned_cols=209 Identities=19% Similarity=0.248 Sum_probs=144.7
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeE---ee---c
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY---RA---G 424 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~---is---~ 424 (802)
+..+.+|+||+|++.+++.|+..+. ..+.++.+||+||||+|||++|+++|+.+++..-. .. |
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~-----------~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIA-----------EGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHH-----------hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 4556799999999999999988776 34567789999999999999999999988642210 00 0
Q ss_pred c-----------chhhhh--hhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccc
Q 003696 425 S-----------EFEEMF--VGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF 487 (802)
Q Consensus 425 s-----------e~~e~~--vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~ 487 (802)
. ++.+.. ...+...++++.+.+.. ....||||||+|.|. ...++.||..|+..
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~----------~~a~naLLk~LEep 147 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS----------TAAFNALLKTLEEP 147 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC----------HHHHHHHHHHHhcC
Confidence 0 000000 01223445555544332 234599999999983 46788899988864
Q ss_pred ccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHH
Q 003696 488 EQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANL 566 (802)
Q Consensus 488 ~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nL 566 (802)
. ..+++|.+|+..+.+.+.+++ |+ ..+.|..++..+...+++..+.+.... ++..+..|++.+.| +.+++.+.
T Consensus 148 p--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~~ 221 (585)
T PRK14950 148 P--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAENL 221 (585)
T ss_pred C--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 3 345666666767778788876 66 468899999999999999888766543 33446778877765 88888888
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHH
Q 003696 567 VNIAAIKAAVDGGEKLTATELEFA 590 (802)
Q Consensus 567 vn~Aa~~Aa~~~~~~It~edle~A 590 (802)
++....+ +...||.++++..
T Consensus 222 LekL~~y----~~~~It~e~V~~l 241 (585)
T PRK14950 222 LQQLATT----YGGEISLSQVQSL 241 (585)
T ss_pred HHHHHHh----cCCCCCHHHHHHH
Confidence 8765432 3457888887654
No 117
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.58 E-value=8.7e-14 Score=149.88 Aligned_cols=207 Identities=22% Similarity=0.269 Sum_probs=139.4
Q ss_pred cccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcC-----CCeeE
Q 003696 347 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-----VPFFY 421 (802)
Q Consensus 347 ~~~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag-----~pfi~ 421 (802)
.|.++..+.+|+|++|++++++.|+..+. ....| +++|+||||||||++++++++++. .+++.
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~-----------~~~~~-~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~ 73 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVK-----------EKNMP-HLLFAGPPGTGKTTAALALARELYGEDWRENFLE 73 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHh-----------CCCCC-eEEEECCCCCCHHHHHHHHHHHHcCCccccceEE
Confidence 35667777899999999999988887764 12233 589999999999999999999873 34555
Q ss_pred eeccchhhhhhhhhHHHHHHHHHH-HHh-----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEE
Q 003696 422 RAGSEFEEMFVGVGARRVRSLFQA-AKK-----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIL 495 (802)
Q Consensus 422 is~se~~e~~vG~~~k~vr~lF~~-Ar~-----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIV 495 (802)
+++++-.. ...+++.+.. +.. ..+.+|+|||+|.+.. ...+.|+..++....+ ..+
T Consensus 74 ~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~----------~~~~~L~~~le~~~~~--~~l 135 (319)
T PRK00440 74 LNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS----------DAQQALRRTMEMYSQN--TRF 135 (319)
T ss_pred eccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH----------HHHHHHHHHHhcCCCC--CeE
Confidence 54443211 1112222221 111 2346999999999832 3345667667654443 344
Q ss_pred EeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 003696 496 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKA 574 (802)
Q Consensus 496 IaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~A 574 (802)
|.++|.+..+.+++.+ |+. .+++++|+.++...+++.++++.... ++..+..+++.+.| +.+.+.+.++.+...
T Consensus 136 Il~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~~- 210 (319)
T PRK00440 136 ILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAAT- 210 (319)
T ss_pred EEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc-
Confidence 4566777777777776 664 58999999999999999998776543 44457888887654 555555555543321
Q ss_pred HHhCCCccCHHHHHHHHH
Q 003696 575 AVDGGEKLTATELEFAKD 592 (802)
Q Consensus 575 a~~~~~~It~edle~A~~ 592 (802)
...||.+++..++.
T Consensus 211 ----~~~it~~~v~~~~~ 224 (319)
T PRK00440 211 ----GKEVTEEAVYKITG 224 (319)
T ss_pred ----CCCCCHHHHHHHhC
Confidence 36799999987653
No 118
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.57 E-value=2.7e-14 Score=173.73 Aligned_cols=202 Identities=20% Similarity=0.276 Sum_probs=148.7
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc----------CCCeeEeec
Q 003696 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRAG 424 (802)
Q Consensus 355 ~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea----------g~pfi~is~ 424 (802)
-.|++|+|.++..+.+.+++. .+.+.+++|+||||||||++|+++|.+. +.+++.++.
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 368999999998777766653 2344589999999999999999999976 467889998
Q ss_pred cchh--hhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCC
Q 003696 425 SEFE--EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 502 (802)
Q Consensus 425 se~~--e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~p 502 (802)
+.+. ..|.|+.+++++.+|+.++...++||||||||.+.+..+..+. ....+-|...+ .++.+.+|++|+..
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~--~~~a~lLkp~l----~rg~l~~IgaTt~~ 317 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA--IDAANILKPAL----ARGELQCIGATTLD 317 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc--ccHHHHhHHHH----hCCCcEEEEeCCHH
Confidence 8775 4678889999999999998888899999999999765433221 12223333333 35678999999976
Q ss_pred C-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc----CCC-CCcccHHHHHhcCCCCC-----HHHHHHHH
Q 003696 503 D-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD----KPL-ADDVDVKAIARGTPGFN-----GADLANLV 567 (802)
Q Consensus 503 e-----~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~----~~l-~~dvdl~~LA~~t~G~S-----gaDL~nLv 567 (802)
+ ..|+++.| ||. .|.++.|+.++...|++..... ..+ -++..+..++..+.+|. +.-...++
T Consensus 318 ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidll 394 (821)
T CHL00095 318 EYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLL 394 (821)
T ss_pred HHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHH
Confidence 4 47999999 996 5799999999999998764421 222 13334666666666543 45566788
Q ss_pred HHHHHHHHHh
Q 003696 568 NIAAIKAAVD 577 (802)
Q Consensus 568 n~Aa~~Aa~~ 577 (802)
.+|+......
T Consensus 395 d~a~a~~~~~ 404 (821)
T CHL00095 395 DEAGSRVRLI 404 (821)
T ss_pred HHHHHHHHhh
Confidence 8877765543
No 119
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=8e-14 Score=163.92 Aligned_cols=214 Identities=14% Similarity=0.212 Sum_probs=148.5
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeE---------
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY--------- 421 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~--------- 421 (802)
...+.+|+||+|++.+++.|+..+. .+++|.++||+||||||||++|+++|+.+++.--.
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 3456799999999999999988775 56788899999999999999999999998763100
Q ss_pred -eecc------chhh-------hhhh---hhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHH
Q 003696 422 -RAGS------EFEE-------MFVG---VGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQL 480 (802)
Q Consensus 422 -is~s------e~~e-------~~vG---~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqL 480 (802)
-.|. .+.. .+.+ .+...++++.+.+.. ....|++|||+|.+. ...++.|
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt----------~~a~naL 147 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS----------TAAFNAF 147 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC----------HHHHHHH
Confidence 0110 0000 0111 123556666555532 234599999999993 4567889
Q ss_pred HHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCC
Q 003696 481 LVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFN 559 (802)
Q Consensus 481 L~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~S 559 (802)
|..|+.. ...+++|.+|+.+..|-+.+.+ |+ ..+.+..++.++....++..+++.... ++..+..|+..+.| +
T Consensus 148 LK~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G-d 221 (620)
T PRK14954 148 LKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG-S 221 (620)
T ss_pred HHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-C
Confidence 9998853 3345555566667888888876 55 689999999999998888887765543 44457778887765 6
Q ss_pred HHHHHHHHHHHHHHHHH-hCCCccCHHHHHHHH
Q 003696 560 GADLANLVNIAAIKAAV-DGGEKLTATELEFAK 591 (802)
Q Consensus 560 gaDL~nLvn~Aa~~Aa~-~~~~~It~edle~A~ 591 (802)
.+++.+.++....++.- .....||.+++...+
T Consensus 222 lr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 222 MRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 77777777665544421 224678888776654
No 120
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.56 E-value=1.5e-13 Score=162.32 Aligned_cols=216 Identities=21% Similarity=0.258 Sum_probs=142.6
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCce-EEEEccCCCcHHHHHHHHHHhc-------C---CCeeEeeccc
Q 003696 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKG-ILLTGAPGTGKTLLAKAIAGEA-------G---VPFFYRAGSE 426 (802)
Q Consensus 358 dDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~Pkg-VLL~GPPGTGKT~LArALA~ea-------g---~pfi~is~se 426 (802)
+.|.|.++..++|..++..... | ..|.+ ++|+|+||||||++++.+.+++ + +.+++++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------g-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------Q-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------c-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 4567777776666665553211 1 22434 5699999999999999998765 2 5578999965
Q ss_pred hhhhh---h-------------h-hhHHHHHHHHHHHHh--cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccc
Q 003696 427 FEEMF---V-------------G-VGARRVRSLFQAAKK--KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF 487 (802)
Q Consensus 427 ~~e~~---v-------------G-~~~k~vr~lF~~Ar~--~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~ 487 (802)
+...+ . | .....+..+|..... ...+||+|||||.|..+ .+..|..|+....
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-------~QDVLYnLFR~~~-- 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-------TQKVLFTLFDWPT-- 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-------HHHHHHHHHHHhh--
Confidence 43221 0 1 122445566665522 34579999999999653 2456666666533
Q ss_pred ccCCCEEEEeecCC---CCCCChhhcCCCccce-EEEccCCCHHHHHHHHHHHhccCC-CCCcccHHHHHhcCCCCCHHH
Q 003696 488 EQNEGIILMAATNL---PDILDPALTRPGRFDR-HIVVPNPDVRGRQEILELYLQDKP-LADDVDVKAIARGTPGFNGAD 562 (802)
Q Consensus 488 ~~~~~VIVIaATN~---pe~LD~ALlRpGRFdr-~I~v~lPd~eeR~~ILk~~l~~~~-l~~dvdl~~LA~~t~G~SgaD 562 (802)
.....++|||++|. ++.|++.+.+ ||.. .+.|++++.+++.+||+..+.... .-++..+..+|+..... .+|
T Consensus 898 ~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~-SGD 974 (1164)
T PTZ00112 898 KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV-SGD 974 (1164)
T ss_pred ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc-CCH
Confidence 23567999999986 5677788776 6654 488899999999999999987532 22344466777744422 235
Q ss_pred HHH---HHHHHHHHHHHhCCCccCHHHHHHHHHHHhc
Q 003696 563 LAN---LVNIAAIKAAVDGGEKLTATELEFAKDRILM 596 (802)
Q Consensus 563 L~n---Lvn~Aa~~Aa~~~~~~It~edle~A~~ril~ 596 (802)
++. +|+.|+.. .+...|+.+|+..|..++..
T Consensus 975 ARKALDILRrAgEi---kegskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 975 IRKALQICRKAFEN---KRGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred HHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHh
Confidence 554 55555443 45568999999999987643
No 121
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.55 E-value=1.5e-13 Score=154.94 Aligned_cols=218 Identities=25% Similarity=0.302 Sum_probs=135.9
Q ss_pred CCccc-ccCCHHHHHHHHHHHHH----hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh
Q 003696 355 KTFKD-VKGCDDAKQELVEVVEY----LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (802)
Q Consensus 355 ~tFdD-ViG~deaK~eL~eiV~~----Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e 429 (802)
..+++ |+|++++|+.|...+.. +........-......++||+||||||||++|+++|..+++||+.++++.+.+
T Consensus 67 ~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~ 146 (412)
T PRK05342 67 AHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTE 146 (412)
T ss_pred HHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 34554 89999999999776532 21110000000112368999999999999999999999999999999988764
Q ss_pred -hhhhhhHH-HHHHHHHHH----HhcCCcEEEEcchhhhccccccCC----cchHHHHHHHHHHhcccc-----------
Q 003696 430 -MFVGVGAR-RVRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFE----------- 488 (802)
Q Consensus 430 -~~vG~~~k-~vr~lF~~A----r~~aP~ILfIDEIDaLg~~r~~~~----~~~~~tLnqLL~eLDg~~----------- 488 (802)
.|+|.... .+..++..+ ....++||||||||.+..++...+ -....+++.||..||+-.
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 57776433 344444432 234678999999999977633211 112457888888888631
Q ss_pred cCCCEEEEeecCCCC----------------------------C------------------------CChhhcCCCccc
Q 003696 489 QNEGIILMAATNLPD----------------------------I------------------------LDPALTRPGRFD 516 (802)
Q Consensus 489 ~~~~VIVIaATN~pe----------------------------~------------------------LD~ALlRpGRFd 516 (802)
.....++|.|+|-.. . +.|.++ ||+|
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld 304 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLP 304 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCC
Confidence 111345566655410 0 122332 6999
Q ss_pred eEEEccCCCHHHHHHHHHH----Hhc-------cCCCC---CcccHHHHHhc--CCCCCHHHHHHHHHHHHHHH
Q 003696 517 RHIVVPNPDVRGRQEILEL----YLQ-------DKPLA---DDVDVKAIARG--TPGFNGADLANLVNIAAIKA 574 (802)
Q Consensus 517 r~I~v~lPd~eeR~~ILk~----~l~-------~~~l~---~dvdl~~LA~~--t~G~SgaDL~nLvn~Aa~~A 574 (802)
..+.+.+.+.++..+|+.. .++ ..... .+..+..|++. ..++-.+.|+.+++....-.
T Consensus 305 ~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~ 378 (412)
T PRK05342 305 VVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDV 378 (412)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHH
Confidence 9999999999999998873 222 11111 22225566654 33444566666666554433
No 122
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.55 E-value=2.3e-13 Score=160.78 Aligned_cols=217 Identities=21% Similarity=0.248 Sum_probs=137.5
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc----------CCCe
Q 003696 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPF 419 (802)
Q Consensus 350 ~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea----------g~pf 419 (802)
....+.+|++++|++.+...+...+. ...|.+++|+||||||||++|+++++.. +.+|
T Consensus 146 ~~~rp~~~~~iiGqs~~~~~l~~~ia------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 146 SLLRPRAFSEIVGQERAIKALLAKVA------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hhcCcCcHHhceeCcHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 34445789999999998877654432 1234579999999999999999998755 4679
Q ss_pred eEeeccchhh-------hhhhhhHH----HHHHHHHH----------HHhcCCcEEEEcchhhhccccccCCcchHHHHH
Q 003696 420 FYRAGSEFEE-------MFVGVGAR----RVRSLFQA----------AKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLH 478 (802)
Q Consensus 420 i~is~se~~e-------~~vG~~~k----~vr~lF~~----------Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLn 478 (802)
+.++|..+.. ...+.... ..+..+.. .......+|||||++.|. ...+.
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld----------~~~Q~ 283 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD----------PLLQN 283 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC----------HHHHH
Confidence 9999876521 11111100 01111110 001224599999999883 33445
Q ss_pred HHHHHhcccc--------------------------cCCCEEEEee-cCCCCCCChhhcCCCccceEEEccCCCHHHHHH
Q 003696 479 QLLVEMDGFE--------------------------QNEGIILMAA-TNLPDILDPALTRPGRFDRHIVVPNPDVRGRQE 531 (802)
Q Consensus 479 qLL~eLDg~~--------------------------~~~~VIVIaA-TN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ 531 (802)
.|+..|+.-. ....+++|++ |+.++.++++|++ ||. .+.+++++.+++..
T Consensus 284 ~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~ 360 (615)
T TIGR02903 284 KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHH
Confidence 5555553210 1223566655 4568889999987 886 56888899999999
Q ss_pred HHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh--------CCCccCHHHHHHHHHH
Q 003696 532 ILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD--------GGEKLTATELEFAKDR 593 (802)
Q Consensus 532 ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~--------~~~~It~edle~A~~r 593 (802)
|++.++.+.... .+..+..|++.+. .++...+++..+...+..+ +...|+.+|+++++..
T Consensus 361 Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 361 IVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 999998865432 2333566666553 5566656665554443222 2236899999888753
No 123
>PRK05642 DNA replication initiation factor; Validated
Probab=99.55 E-value=3.1e-13 Score=141.65 Aligned_cols=179 Identities=20% Similarity=0.204 Sum_probs=126.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccc
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 467 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~ 467 (802)
...++||||+|||||+|++|+++++ +..+++++..++.... ..+.+..+.. .+|+|||++.+.++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~-- 112 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAGK-- 112 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcCC--
Confidence 3579999999999999999998764 6778888887765431 1222233322 59999999988543
Q ss_pred cCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCC---ChhhcCCCccc--eEEEccCCCHHHHHHHHHHHhccCCC
Q 003696 468 QWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL---DPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPL 542 (802)
Q Consensus 468 ~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~L---D~ALlRpGRFd--r~I~v~lPd~eeR~~ILk~~l~~~~l 542 (802)
......|+..++.+..+++.++|+++..|..+ .+.|++ ||. ..+.+..|+.++|..+++..+....+
T Consensus 113 ------~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~ 184 (234)
T PRK05642 113 ------ADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGL 184 (234)
T ss_pred ------hHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCC
Confidence 22233455555555556677888887766543 577776 885 47788999999999999976665544
Q ss_pred C-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003696 543 A-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAK 591 (802)
Q Consensus 543 ~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~ 591 (802)
. ++.-++.|++...+ +.+.+.++++.... ++...++.||..-+++++
T Consensus 185 ~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~-~~l~~~~~it~~~~~~~L 232 (234)
T PRK05642 185 HLTDEVGHFILTRGTR-SMSALFDLLERLDQ-ASLQAQRKLTIPFLKETL 232 (234)
T ss_pred CCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH-HHHHcCCcCCHHHHHHHh
Confidence 3 34447788888775 89999999987754 444445779988877664
No 124
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.54 E-value=4e-13 Score=150.17 Aligned_cols=228 Identities=19% Similarity=0.243 Sum_probs=167.5
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc-----CCCeeEeecc
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGS 425 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea-----g~pfi~is~s 425 (802)
-.+.-||++++.-+.-.....-...+...|.. .-..++||||.|.|||+|++|+++++ +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-------~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPGG-------AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccCC-------cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 44556899976655544444444443344322 22359999999999999999999876 3458899999
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCC
Q 003696 426 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (802)
Q Consensus 426 e~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~L 505 (802)
.|...++......-.+-|+.-. .-.+++||+|+.+.++. .+...+...++.+..+++-||+++...|..|
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~--------~~qeefFh~FN~l~~~~kqIvltsdr~P~~l 222 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE--------RTQEEFFHTFNALLENGKQIVLTSDRPPKEL 222 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh--------hHHHHHHHHHHHHHhcCCEEEEEcCCCchhh
Confidence 9988877665555555666655 44699999999997752 3344455555545556667888888888765
Q ss_pred ---ChhhcCCCccce--EEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 003696 506 ---DPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG 579 (802)
Q Consensus 506 ---D~ALlRpGRFdr--~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~ 579 (802)
.+.|.+ ||.+ .+.+.+||.+.|..||+..+....+. ++.-+..++.... -+.++|+.++++....+...+.
T Consensus 223 ~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~~ 299 (408)
T COG0593 223 NGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTKR 299 (408)
T ss_pred ccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcCc
Confidence 477776 9987 77889999999999999987766655 3334677777765 4899999999988888877665
Q ss_pred CccCHHHHHHHHHHHhcccc
Q 003696 580 EKLTATELEFAKDRILMGTE 599 (802)
Q Consensus 580 ~~It~edle~A~~ril~g~~ 599 (802)
.||.+.+.+++.......+
T Consensus 300 -~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 300 -AITIDLVKEILKDLLRAGE 318 (408)
T ss_pred -cCcHHHHHHHHHHhhcccc
Confidence 9999999999998876655
No 125
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.54 E-value=1.8e-13 Score=153.02 Aligned_cols=172 Identities=30% Similarity=0.430 Sum_probs=126.0
Q ss_pred ccCCHHHHHHHHHHHHH-hcCchhhhhc-CCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh-hhhh-hh
Q 003696 360 VKGCDDAKQELVEVVEY-LKNPSKFTRL-GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFVG-VG 435 (802)
Q Consensus 360 ViG~deaK~eL~eiV~~-Lk~p~~~~~l-G~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e-~~vG-~~ 435 (802)
|+|++++|..+...+.. ++.......+ ....|+++||+||||||||++|+++|..++.||+.+++..+.+ .|+| ..
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 89999999999776652 1211111111 2335789999999999999999999999999999999988875 5777 45
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 003696 436 ARRVRSLFQAAK-------------------------------------------------------------------- 447 (802)
Q Consensus 436 ~k~vr~lF~~Ar-------------------------------------------------------------------- 447 (802)
+..++.+|..|.
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 666666666550
Q ss_pred -----------------------------------------------------------------------hcCCcEEEE
Q 003696 448 -----------------------------------------------------------------------KKAPCIIFI 456 (802)
Q Consensus 448 -----------------------------------------------------------------------~~aP~ILfI 456 (802)
...-.||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 012349999
Q ss_pred cchhhhccccccC--CcchHHHHHHHHHHhcccc--------cCCCEEEEeecCC----CCCCChhhcCCCccceEEEcc
Q 003696 457 DEIDAVGSTRKQW--EGHTKKTLHQLLVEMDGFE--------QNEGIILMAATNL----PDILDPALTRPGRFDRHIVVP 522 (802)
Q Consensus 457 DEIDaLg~~r~~~--~~~~~~tLnqLL~eLDg~~--------~~~~VIVIaATN~----pe~LD~ALlRpGRFdr~I~v~ 522 (802)
||||.++.+.... +-....+++.||..++|-. ...++++||+.-+ |.+|=|.|. |||..++.+.
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~ 331 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVELQ 331 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECC
Confidence 9999998765322 2234568888999998842 2356888877643 556666665 6999999999
Q ss_pred CCCHHHHHHHH
Q 003696 523 NPDVRGRQEIL 533 (802)
Q Consensus 523 lPd~eeR~~IL 533 (802)
.++.++...||
T Consensus 332 ~L~~edL~rIL 342 (441)
T TIGR00390 332 ALTTDDFERIL 342 (441)
T ss_pred CCCHHHHHHHh
Confidence 99999998887
No 126
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.53 E-value=1.7e-13 Score=142.47 Aligned_cols=199 Identities=22% Similarity=0.316 Sum_probs=129.5
Q ss_pred CCCCccccc-CC--HHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc-----CCCeeEeec
Q 003696 353 NVKTFKDVK-GC--DDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAG 424 (802)
Q Consensus 353 ~~~tFdDVi-G~--deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea-----g~pfi~is~ 424 (802)
+..||++.+ |. ..+....+.+.. ++.. .-..++||||+|+|||+|.+|+++++ +..++|+++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~---~~~~-------~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAE---NPGE-------RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHH---STTT-------SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHh---cCCC-------CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 346899975 42 333333333332 2211 22359999999999999999999874 577999999
Q ss_pred cchhhhhhhhhHHH-HHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCC
Q 003696 425 SEFEEMFVGVGARR-VRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (802)
Q Consensus 425 se~~e~~vG~~~k~-vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe 503 (802)
.+|...+....... +.++....+ ...+|+||++|.+.++ ..+...|+..++.+..+++.+||++...|.
T Consensus 73 ~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~--------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK--------QRTQEELFHLFNRLIESGKQLILTSDRPPS 142 (219)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH--------HHHHHHHHHHHHHHHHTTSEEEEEESS-TT
T ss_pred HHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc--------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCc
Confidence 99887765433221 222222222 3479999999999653 345566666666666677778887777777
Q ss_pred CC---ChhhcCCCccce--EEEccCCCHHHHHHHHHHHhccCCCCCccc-HHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 003696 504 IL---DPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPLADDVD-VKAIARGTPGFNGADLANLVNIAAIKA 574 (802)
Q Consensus 504 ~L---D~ALlRpGRFdr--~I~v~lPd~eeR~~ILk~~l~~~~l~~dvd-l~~LA~~t~G~SgaDL~nLvn~Aa~~A 574 (802)
.| ++.|.+ ||.. .+.+..||.+.|.+|++..+....+.-+.+ +..|++..+ -+.++|..++++...++
T Consensus 143 ~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 143 ELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp TTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred cccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 55 566665 8776 889999999999999999998877663333 667777766 48899999988776655
No 127
>PRK06620 hypothetical protein; Validated
Probab=99.53 E-value=2.3e-13 Score=141.05 Aligned_cols=198 Identities=13% Similarity=0.172 Sum_probs=128.1
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCC--ceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchh
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLP--KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~P--kgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~ 428 (802)
..+.-+|++++-.+.-...+..+..+...+ + ..| ..++||||||||||+|++++++..+..++. .....
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~------~-~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~ 79 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCGF------G-VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN 79 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHcc------c-cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhhc
Confidence 344558888665543222232222222212 1 123 579999999999999999999988764322 11110
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCC--CC
Q 003696 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI--LD 506 (802)
Q Consensus 429 e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~--LD 506 (802)
.+.+ ....+|+|||||.+ ....+..+++. +..+++.++|+++..|.. +
T Consensus 80 -----------~~~~-----~~~d~lliDdi~~~----------~~~~lf~l~N~---~~e~g~~ilits~~~p~~l~l- 129 (214)
T PRK06620 80 -----------EEIL-----EKYNAFIIEDIENW----------QEPALLHIFNI---INEKQKYLLLTSSDKSRNFTL- 129 (214)
T ss_pred -----------hhHH-----hcCCEEEEeccccc----------hHHHHHHHHHH---HHhcCCEEEEEcCCCccccch-
Confidence 1111 12369999999955 11233344333 334566788888877764 5
Q ss_pred hhhcCCCccce--EEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 003696 507 PALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 583 (802)
Q Consensus 507 ~ALlRpGRFdr--~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It 583 (802)
++|++ |+.. .+.+..||.+.+..+++.++....+. ++..++.|++...| +.+.+.++++.....+.. .+..||
T Consensus 130 ~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~-~~~~it 205 (214)
T PRK06620 130 PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALI-SKRKIT 205 (214)
T ss_pred HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH-cCCCCC
Confidence 67776 8864 78999999999999999988765543 34447888888865 888999999875544433 446799
Q ss_pred HHHHHHHH
Q 003696 584 ATELEFAK 591 (802)
Q Consensus 584 ~edle~A~ 591 (802)
.+.+++++
T Consensus 206 ~~~~~~~l 213 (214)
T PRK06620 206 ISLVKEVL 213 (214)
T ss_pred HHHHHHHh
Confidence 98887664
No 128
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.52 E-value=1.2e-13 Score=151.76 Aligned_cols=219 Identities=23% Similarity=0.325 Sum_probs=137.2
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc-------CCCeeEee--
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRA-- 423 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea-------g~pfi~is-- 423 (802)
....|++|+|+++++..|.-..- ++ | -.++||+||||||||++||++++-+ ++|+-..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---~~------~---~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---DP------G---IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---cc------C---CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 34679999999999888764321 11 1 1379999999999999999999987 33222111
Q ss_pred c-cch---------------hhhhhhhhHHHHH------H-------HHHHH--HhcCCcEEEEcchhhhccccccCCcc
Q 003696 424 G-SEF---------------EEMFVGVGARRVR------S-------LFQAA--KKKAPCIIFIDEIDAVGSTRKQWEGH 472 (802)
Q Consensus 424 ~-se~---------------~e~~vG~~~k~vr------~-------lF~~A--r~~aP~ILfIDEIDaLg~~r~~~~~~ 472 (802)
+ .++ .....+.+..++- . .|..- ......+||||||+.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 0 000 0000010010000 0 01100 00112499999999983
Q ss_pred hHHHHHHHHHHhcccc-----------cCCCEEEEeecCCCC-CCChhhcCCCccceEEEccCCCH-HHHHHHHHHHhcc
Q 003696 473 TKKTLHQLLVEMDGFE-----------QNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNPDV-RGRQEILELYLQD 539 (802)
Q Consensus 473 ~~~tLnqLL~eLDg~~-----------~~~~VIVIaATN~pe-~LD~ALlRpGRFdr~I~v~lPd~-eeR~~ILk~~l~~ 539 (802)
..+++.|+..|+.-. ...++++|+++|..+ .++++++. ||...+.++.|.. ++|.+|++.....
T Consensus 142 -~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~~~ 218 (334)
T PRK13407 142 -DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRDAY 218 (334)
T ss_pred -HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhhcc
Confidence 467777777775321 235689999999654 68999988 9999999998866 8999999875432
Q ss_pred CC----C------C--------------------Cccc---HHHHHhcCC-CCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 003696 540 KP----L------A--------------------DDVD---VKAIARGTP-GFNGADLANLVNIAAIKAAVDGGEKLTAT 585 (802)
Q Consensus 540 ~~----l------~--------------------~dvd---l~~LA~~t~-G~SgaDL~nLvn~Aa~~Aa~~~~~~It~e 585 (802)
.. . . ++.. +..++..+. .-..++|. +++.|...|+.+|++.|+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V~~~ 297 (334)
T PRK13407 219 DADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAVGRS 297 (334)
T ss_pred cccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCeeCHH
Confidence 10 0 0 0101 112222222 12445666 99999999999999999999
Q ss_pred HHHHHHHHHhc
Q 003696 586 ELEFAKDRILM 596 (802)
Q Consensus 586 dle~A~~ril~ 596 (802)
|+..+..-++.
T Consensus 298 Di~~~~~~vl~ 308 (334)
T PRK13407 298 HLRSVATMALS 308 (334)
T ss_pred HHHHHHHHhhh
Confidence 99877755543
No 129
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.51 E-value=4.3e-13 Score=150.06 Aligned_cols=173 Identities=28% Similarity=0.405 Sum_probs=127.5
Q ss_pred ccCCHHHHHHHHHHHHH-hcCchhhhhcC-CCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh-hhhh-hh
Q 003696 360 VKGCDDAKQELVEVVEY-LKNPSKFTRLG-GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFVG-VG 435 (802)
Q Consensus 360 ViG~deaK~eL~eiV~~-Lk~p~~~~~lG-~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e-~~vG-~~ 435 (802)
|+|++++|..+...+.. ++.......+. ...|+++||+||||||||++|+++|..++.||+.+++++|.+ .|+| ..
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 89999999999887642 11111100111 123689999999999999999999999999999999999886 5888 44
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 003696 436 ARRVRSLFQAAK-------------------------------------------------------------------- 447 (802)
Q Consensus 436 ~k~vr~lF~~Ar-------------------------------------------------------------------- 447 (802)
+..++++|..|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 667777776661
Q ss_pred --h--------------------------------------------------------------------cCCcEEEEc
Q 003696 448 --K--------------------------------------------------------------------KAPCIIFID 457 (802)
Q Consensus 448 --~--------------------------------------------------------------------~aP~ILfID 457 (802)
. ..-.|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0 022499999
Q ss_pred chhhhccccccC--CcchHHHHHHHHHHhcccc--------cCCCEEEEeecCC----CCCCChhhcCCCccceEEEccC
Q 003696 458 EIDAVGSTRKQW--EGHTKKTLHQLLVEMDGFE--------QNEGIILMAATNL----PDILDPALTRPGRFDRHIVVPN 523 (802)
Q Consensus 458 EIDaLg~~r~~~--~~~~~~tLnqLL~eLDg~~--------~~~~VIVIaATN~----pe~LD~ALlRpGRFdr~I~v~l 523 (802)
|||.+..+.+.. +-....++..||..++|-. ...+|++||+--+ |.+|-|.|. |||..++.+..
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~ 334 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELDA 334 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECCC
Confidence 999998765322 2233568888999998832 3456888877543 566667776 69999999999
Q ss_pred CCHHHHHHHHH
Q 003696 524 PDVRGRQEILE 534 (802)
Q Consensus 524 Pd~eeR~~ILk 534 (802)
++.++...||.
T Consensus 335 L~~~dL~~ILt 345 (443)
T PRK05201 335 LTEEDFVRILT 345 (443)
T ss_pred CCHHHHHHHhc
Confidence 99999998873
No 130
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.51 E-value=3.5e-13 Score=162.66 Aligned_cols=218 Identities=22% Similarity=0.292 Sum_probs=143.4
Q ss_pred cc-cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh------
Q 003696 357 FK-DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE------ 429 (802)
Q Consensus 357 Fd-DViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e------ 429 (802)
++ |..|++++|+.+.+.+...+.... .+ ...++|+||||+|||++++.+|+.++.+|+.++.+...+
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~~-----~~-g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g 393 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVNK-----IK-GPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRG 393 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhccc-----CC-CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhcc
Confidence 44 489999999999887775332211 11 236999999999999999999999999999888765432
Q ss_pred ---hhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcc-----cc--------cCCCE
Q 003696 430 ---MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-----FE--------QNEGI 493 (802)
Q Consensus 430 ---~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg-----~~--------~~~~V 493 (802)
.|.|....++...+..+....| ||||||||.++.... + .....|+..+|. |. .-+++
T Consensus 394 ~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~---g---~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 394 HRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR---G---DPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred chhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC---C---CHHHHHHHHhccccEEEEecccccccccCCce
Confidence 2555555556666655544444 899999999965321 1 134556666652 11 12679
Q ss_pred EEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc-----CCCC------CcccHHHHHh-cCCCCCHH
Q 003696 494 ILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD-----KPLA------DDVDVKAIAR-GTPGFNGA 561 (802)
Q Consensus 494 IVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~-----~~l~------~dvdl~~LA~-~t~G~Sga 561 (802)
++|||+|.. .|+++|+. ||. .|.+..++.++..+|.+.|+.. ..+. .+..+..|++ .+..+-.+
T Consensus 467 ~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR 542 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVR 542 (784)
T ss_pred EEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCc
Confidence 999999987 59999998 995 7899999999999999998841 1111 1222445553 23334446
Q ss_pred HHHHHHHHHHHHHH----HhCC---CccCHHHHHHHH
Q 003696 562 DLANLVNIAAIKAA----VDGG---EKLTATELEFAK 591 (802)
Q Consensus 562 DL~nLvn~Aa~~Aa----~~~~---~~It~edle~A~ 591 (802)
.|+.+++..+.... ..+. -.|+.+++...+
T Consensus 543 ~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~l 579 (784)
T PRK10787 543 SLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYL 579 (784)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHh
Confidence 66665555443332 2221 246666665443
No 131
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.50 E-value=6.8e-13 Score=141.25 Aligned_cols=186 Identities=21% Similarity=0.228 Sum_probs=119.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccch------hhhhhhhhHHHHH---------------------HHHH
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF------EEMFVGVGARRVR---------------------SLFQ 444 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~------~e~~vG~~~k~vr---------------------~lF~ 444 (802)
..+||+||||||||++|+++|...|.||+.++|..- ...+.+.....+. .++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 469999999999999999999999999999987542 2212111111111 1122
Q ss_pred HHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc--------------cCCCEEEEeecCCCC-----CC
Q 003696 445 AAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--------------QNEGIILMAATNLPD-----IL 505 (802)
Q Consensus 445 ~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~--------------~~~~VIVIaATN~pe-----~L 505 (802)
.++ .+.+|+|||||.+. ..+++.|+..|+.-. .+.++.||+|+|... .+
T Consensus 102 A~~--~g~~lllDEi~r~~----------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l 169 (262)
T TIGR02640 102 AVR--EGFTLVYDEFTRSK----------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHET 169 (262)
T ss_pred HHH--cCCEEEEcchhhCC----------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecc
Confidence 222 23699999999983 356666666665311 123577899999753 56
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHH---HHhcCC----CCCHHHHHHHHHHHHHHHHHhC
Q 003696 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKA---IARGTP----GFNGADLANLVNIAAIKAAVDG 578 (802)
Q Consensus 506 D~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~---LA~~t~----G~SgaDL~nLvn~Aa~~Aa~~~ 578 (802)
++++.+ || ..+.++.|+.++-.+|++.+.. .... ..+. ++..+. -...+ ++.++..+...+....
T Consensus 170 ~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~-~~~~iv~~~~~~R~~~~~~~~~-~r~~i~~~~~~~~~~~ 241 (262)
T TIGR02640 170 QDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAED-SAATIVRLVREFRASGDEITSG-LRASLMIAEVATQQDI 241 (262)
T ss_pred cHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHH-HHHHHHHHHHHHHhhCCccCCc-HHHHHHHHHHHHHcCC
Confidence 889998 88 6889999999999999998752 2211 1111 111111 11111 5555555555555566
Q ss_pred CCccCHHHHHHHHHHHhcc
Q 003696 579 GEKLTATELEFAKDRILMG 597 (802)
Q Consensus 579 ~~~It~edle~A~~ril~g 597 (802)
...++.+||...+..++.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 242 PVDVDDEDFVDLCIDILAS 260 (262)
T ss_pred CCCCCcHHHHHHHHHHhcc
Confidence 7788888888887776543
No 132
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.3e-13 Score=157.75 Aligned_cols=163 Identities=27% Similarity=0.377 Sum_probs=126.5
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh---------
Q 003696 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE--------- 429 (802)
Q Consensus 359 DViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e--------- 429 (802)
|=.|.+++|+++.|.+...+.... .+-| -++|+||||+|||+|++.||+.+|..|+.++...+.+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~-----~kGp-ILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKK-----LKGP-ILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhcc-----CCCc-EEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc
Confidence 458999999999886654322211 1112 6789999999999999999999999999998876643
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcc---------c----ccCCCEEEE
Q 003696 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG---------F----EQNEGIILM 496 (802)
Q Consensus 430 ~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg---------~----~~~~~VIVI 496 (802)
-|+|....++-+-..+|....| +++|||||.++.+- .+... ..||+.+|- | ..=+.|++|
T Consensus 398 TYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~---rGDPa---SALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF---RGDPA---SALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred cccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC---CCChH---HHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 3888888888888888888887 88899999997642 22222 345555442 1 011359999
Q ss_pred eecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHh
Q 003696 497 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYL 537 (802)
Q Consensus 497 aATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l 537 (802)
||.|..+.++.+|+. |+ .+|.+.-++..+..+|.+.|+
T Consensus 471 aTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 471 ATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 999999999999987 77 489999999999999999987
No 133
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.50 E-value=2.7e-13 Score=149.63 Aligned_cols=223 Identities=21% Similarity=0.233 Sum_probs=144.6
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc-------CCCeeEee--
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRA-- 423 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea-------g~pfi~is-- 423 (802)
+...|++|+|++++|..|.-... +| ...|+||.||+|||||++||+++.-+ +.||..-.
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~---~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVI---DP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhcc---CC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 44579999999999988865443 33 22489999999999999999997755 23443000
Q ss_pred ----ccchhh-------------------hhhhhhHHH------HHHHHHHHH---------hcCCcEEEEcchhhhccc
Q 003696 424 ----GSEFEE-------------------MFVGVGARR------VRSLFQAAK---------KKAPCIIFIDEIDAVGST 465 (802)
Q Consensus 424 ----~se~~e-------------------~~vG~~~k~------vr~lF~~Ar---------~~aP~ILfIDEIDaLg~~ 465 (802)
+++... .-.|....+ +...|.... .....+||||||+.+.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~-- 157 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD-- 157 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC--
Confidence 000000 001112221 111122111 1113599999999993
Q ss_pred cccCCcchHHHHHHHHHHhccc-----------ccCCCEEEEeecCCCC-CCChhhcCCCccceEEEccCCC-HHHHHHH
Q 003696 466 RKQWEGHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNPD-VRGRQEI 532 (802)
Q Consensus 466 r~~~~~~~~~tLnqLL~eLDg~-----------~~~~~VIVIaATN~pe-~LD~ALlRpGRFdr~I~v~lPd-~eeR~~I 532 (802)
..++..|+..|+.- ..+.++++|++.|..+ .+.+++.. ||..++.+..|+ .+.+.+|
T Consensus 158 --------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~i 227 (350)
T CHL00081 158 --------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKI 227 (350)
T ss_pred --------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHH
Confidence 45667777777531 1234688898888655 68999998 999999999997 5899999
Q ss_pred HHHHhccC--CCC----------------------------Cccc---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 003696 533 LELYLQDK--PLA----------------------------DDVD---VKAIARGTPGFNGADLANLVNIAAIKAAVDGG 579 (802)
Q Consensus 533 Lk~~l~~~--~l~----------------------------~dvd---l~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~ 579 (802)
++...... ... ++.- +..++..+.--|.+--..+++.|...|+.+|+
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR 307 (350)
T CHL00081 228 VEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGR 307 (350)
T ss_pred HHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCC
Confidence 98754211 000 0101 12233333334677777888889999999999
Q ss_pred CccCHHHHHHHHHHHhcccc
Q 003696 580 EKLTATELEFAKDRILMGTE 599 (802)
Q Consensus 580 ~~It~edle~A~~ril~g~~ 599 (802)
+.|+.+|+..+..-++....
T Consensus 308 ~~V~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 308 TEVTPKDIFKVITLCLRHRL 327 (350)
T ss_pred CCCCHHHHHHHHHHHHHHhC
Confidence 99999999999887776543
No 134
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=7e-13 Score=156.42 Aligned_cols=203 Identities=17% Similarity=0.207 Sum_probs=145.2
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC------------
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 418 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p------------ 418 (802)
...+.+|+||+|++.+++.|...+. .+++|+.+|||||+|+|||++|+++|+.+++.
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~-----------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIA-----------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 3455789999999999999988876 45788899999999999999999999987642
Q ss_pred -------------eeEeeccchhhhhhhhhHHHHHHHHHHHHhc----CCcEEEEcchhhhccccccCCcchHHHHHHHH
Q 003696 419 -------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 481 (802)
Q Consensus 419 -------------fi~is~se~~e~~vG~~~k~vr~lF~~Ar~~----aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL 481 (802)
++.+++.+ ..+...++++...+... ...|++|||+|.+. ...++.|+
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls----------~~a~naLL 142 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS----------QAAFNAFL 142 (614)
T ss_pred hHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC----------HHHHHHHH
Confidence 11222110 11234566666655432 23499999999992 46788999
Q ss_pred HHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCC-cccHHHHHhcCCCCCH
Q 003696 482 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIARGTPGFNG 560 (802)
Q Consensus 482 ~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~-dvdl~~LA~~t~G~Sg 560 (802)
..|+.. ....++|.+|+.+..|-+++++ |+ ..+.|..++.++...+++..+.+..+.. +..+..|+..+. .+.
T Consensus 143 K~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~-gdl 216 (614)
T PRK14971 143 KTLEEP--PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKAD-GGM 216 (614)
T ss_pred HHHhCC--CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCH
Confidence 999853 3455666666677888888887 66 5699999999999999998887766553 334777888774 467
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003696 561 ADLANLVNIAAIKAAVDGGEKLTATELEFA 590 (802)
Q Consensus 561 aDL~nLvn~Aa~~Aa~~~~~~It~edle~A 590 (802)
+++.++++....++ +.. |+.+++...
T Consensus 217 r~al~~Lekl~~y~---~~~-It~~~V~~~ 242 (614)
T PRK14971 217 RDALSIFDQVVSFT---GGN-ITYKSVIEN 242 (614)
T ss_pred HHHHHHHHHHHHhc---cCC-ccHHHHHHH
Confidence 77777776654443 322 777665544
No 135
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.48 E-value=9.1e-13 Score=148.36 Aligned_cols=218 Identities=26% Similarity=0.329 Sum_probs=136.6
Q ss_pred Cccc-ccCCHHHHHHHHHHHHH----hcCc-hhhhhcCCC-CCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchh
Q 003696 356 TFKD-VKGCDDAKQELVEVVEY----LKNP-SKFTRLGGK-LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (802)
Q Consensus 356 tFdD-ViG~deaK~eL~eiV~~----Lk~p-~~~~~lG~~-~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~ 428 (802)
.+++ |+|++++|+.+...+.. +... ......+.. .+.++||+||||||||++|+++|..++.||..++++.+.
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~ 153 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT 153 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcc
Confidence 3444 79999999999876631 2110 000000111 135899999999999999999999999999999988875
Q ss_pred h-hhhhhh-HHHHHHHHHHH----HhcCCcEEEEcchhhhccccccCC----cchHHHHHHHHHHhccccc---------
Q 003696 429 E-MFVGVG-ARRVRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQ--------- 489 (802)
Q Consensus 429 e-~~vG~~-~k~vr~lF~~A----r~~aP~ILfIDEIDaLg~~r~~~~----~~~~~tLnqLL~eLDg~~~--------- 489 (802)
. .|+|.. ...+..++..+ ....++||||||||.+..++...+ -....+++.||..|+|...
T Consensus 154 ~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~ 233 (413)
T TIGR00382 154 EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRK 233 (413)
T ss_pred ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCcc
Confidence 3 466664 33344444322 234578999999999987543221 1123577788888876421
Q ss_pred --CCCEEEEeecCCC---------------------------C-----------------------CCChhhcCCCccce
Q 003696 490 --NEGIILMAATNLP---------------------------D-----------------------ILDPALTRPGRFDR 517 (802)
Q Consensus 490 --~~~VIVIaATN~p---------------------------e-----------------------~LD~ALlRpGRFdr 517 (802)
..+.++|.|+|-. + .+.|.++ ||+|.
T Consensus 234 ~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~ 311 (413)
T TIGR00382 234 HPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPV 311 (413)
T ss_pred ccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCe
Confidence 1236777777751 0 0123333 69999
Q ss_pred EEEccCCCHHHHHHHHHHH----hcc-------CCCC---CcccHHHHHhc--CCCCCHHHHHHHHHHHHHHHH
Q 003696 518 HIVVPNPDVRGRQEILELY----LQD-------KPLA---DDVDVKAIARG--TPGFNGADLANLVNIAAIKAA 575 (802)
Q Consensus 518 ~I~v~lPd~eeR~~ILk~~----l~~-------~~l~---~dvdl~~LA~~--t~G~SgaDL~nLvn~Aa~~Aa 575 (802)
++.+.+.+.++..+|+... +++ .... .+..+..|++. ...+-.+.|+.+++.......
T Consensus 312 Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m 385 (413)
T TIGR00382 312 IATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVM 385 (413)
T ss_pred EeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHH
Confidence 9999999999999988753 221 1111 12225566654 334556677777766555443
No 136
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.2e-12 Score=142.34 Aligned_cols=215 Identities=23% Similarity=0.329 Sum_probs=152.2
Q ss_pred ccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC-----eeEeeccchhhhhh--
Q 003696 360 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-----FFYRAGSEFEEMFV-- 432 (802)
Q Consensus 360 ViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p-----fi~is~se~~e~~v-- 432 (802)
+.+.++..+.|..++... +.+..|.++++|||||||||.+++.+++++.-+ +++++|....+.|.
T Consensus 19 l~~Re~ei~~l~~~l~~~--------~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~ 90 (366)
T COG1474 19 LPHREEEINQLASFLAPA--------LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVL 90 (366)
T ss_pred ccccHHHHHHHHHHHHHH--------hcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHH
Confidence 788888888887765432 234456679999999999999999999987543 89999987654421
Q ss_pred -------------hhhH-HHHHHHHHHHHh-cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEe
Q 003696 433 -------------GVGA-RRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMA 497 (802)
Q Consensus 433 -------------G~~~-k~vr~lF~~Ar~-~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIa 497 (802)
|... +....+++.... ...-||++||+|.|..+.+ ..+..|+...+.. ..+|.+|+
T Consensus 91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-------~~LY~L~r~~~~~--~~~v~vi~ 161 (366)
T COG1474 91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-------EVLYSLLRAPGEN--KVKVSIIA 161 (366)
T ss_pred HHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-------hHHHHHHhhcccc--ceeEEEEE
Confidence 1111 112222222222 4456999999999976432 6788888776654 56789999
Q ss_pred ecCCC---CCCChhhcCCCccc-eEEEccCCCHHHHHHHHHHHhccCCCC---CcccHHHHH---hcCCCCCHHHHHHHH
Q 003696 498 ATNLP---DILDPALTRPGRFD-RHIVVPNPDVRGRQEILELYLQDKPLA---DDVDVKAIA---RGTPGFNGADLANLV 567 (802)
Q Consensus 498 ATN~p---e~LD~ALlRpGRFd-r~I~v~lPd~eeR~~ILk~~l~~~~l~---~dvdl~~LA---~~t~G~SgaDL~nLv 567 (802)
.+|.. +.+|+.+.+ +|. ..|.|++.+.++...|++...+..-.. ++.-+..+| ....| +.+-.-.++
T Consensus 162 i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidil 238 (366)
T COG1474 162 VSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDIL 238 (366)
T ss_pred EeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHH
Confidence 99975 467888776 443 368999999999999999988653222 122233333 33333 556666889
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003696 568 NIAAIKAAVDGGEKLTATELEFAKDRI 594 (802)
Q Consensus 568 n~Aa~~Aa~~~~~~It~edle~A~~ri 594 (802)
+.|+..|.+++...++.+++..|.+.+
T Consensus 239 r~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 239 RRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 999999999999999999999995544
No 137
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.1e-12 Score=151.36 Aligned_cols=166 Identities=27% Similarity=0.453 Sum_probs=126.6
Q ss_pred ccccCCHHHHHHHHHHHHH--hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh------
Q 003696 358 KDVKGCDDAKQELVEVVEY--LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE------ 429 (802)
Q Consensus 358 dDViG~deaK~eL~eiV~~--Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e------ 429 (802)
+|=.|++++|+++.|.+.. |+.. -..+-+.|+||||+|||+++|.||+.+|..|+.++...+.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs--------~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGS--------VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhccc--------CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 3568999999999997654 4332 22346889999999999999999999999999998766543
Q ss_pred ---hhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHH------Hhccc----ccCCCEEEE
Q 003696 430 ---MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV------EMDGF----EQNEGIILM 496 (802)
Q Consensus 430 ---~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~------eLDg~----~~~~~VIVI 496 (802)
-|+|....++-+.+...+-..| +++|||||.+|+. .++....++-.+|. .+|.| -.=++|++|
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g---~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFi 558 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSG---HQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFI 558 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCC---CCCChHHHHHHhcChhhccchhhhccccccchhheEEE
Confidence 2888888888888888887777 8889999999842 22223333333331 11221 112469999
Q ss_pred eecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhc
Q 003696 497 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 538 (802)
Q Consensus 497 aATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~ 538 (802)
||.|..+.|+++|+. |+ ..|.++-+..++...|.+.|+-
T Consensus 559 cTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 559 CTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred EeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 999999999999987 77 4889999999999999999983
No 138
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.45 E-value=1.5e-12 Score=143.43 Aligned_cols=216 Identities=22% Similarity=0.260 Sum_probs=140.3
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc-------CCCeeE-------
Q 003696 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFY------- 421 (802)
Q Consensus 356 tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea-------g~pfi~------- 421 (802)
.|..|+|++++|..|.-.+ -+|. ..+++|.|+||||||++++++++-+ ++|+-.
T Consensus 2 pf~~ivgq~~~~~al~~~~---~~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNV---IDPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHh---cCCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4899999999988874322 2221 2479999999999999999999866 333320
Q ss_pred --eecc---c-------------hhhhhhhhhHHHH------HH------------HHHHHHhcCCcEEEEcchhhhccc
Q 003696 422 --RAGS---E-------------FEEMFVGVGARRV------RS------------LFQAAKKKAPCIIFIDEIDAVGST 465 (802)
Q Consensus 422 --is~s---e-------------~~e~~vG~~~k~v------r~------------lF~~Ar~~aP~ILfIDEIDaLg~~ 465 (802)
-+|. + |.+.-.|....++ .. ++.+ ....+|||||++.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~---A~~GvL~lDEi~~L~-- 144 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLAR---ANRGILYIDEVNLLE-- 144 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCccee---ccCCEEEecChHhCC--
Confidence 0000 0 0111011111111 11 1111 123599999999983
Q ss_pred cccCCcchHHHHHHHHHHhccc-----------ccCCCEEEEeecCCCC-CCChhhcCCCccceEEEccCCCH-HHHHHH
Q 003696 466 RKQWEGHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNPDV-RGRQEI 532 (802)
Q Consensus 466 r~~~~~~~~~tLnqLL~eLDg~-----------~~~~~VIVIaATN~pe-~LD~ALlRpGRFdr~I~v~lPd~-eeR~~I 532 (802)
..+++.|+..|+.- ..+.++++|+++|..+ .++++++. ||..++.++.|+. ++|.+|
T Consensus 145 --------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eI 214 (337)
T TIGR02030 145 --------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEI 214 (337)
T ss_pred --------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHH
Confidence 45667777777431 1234688999988655 68999998 9999999998875 888999
Q ss_pred HHHHhccCC--------C----------------------CCccc---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 003696 533 LELYLQDKP--------L----------------------ADDVD---VKAIARGTPGFNGADLANLVNIAAIKAAVDGG 579 (802)
Q Consensus 533 Lk~~l~~~~--------l----------------------~~dvd---l~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~ 579 (802)
++....... . -++.- +..++..+..-|.+.-..+++.|...|+.+|+
T Consensus 215 L~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR 294 (337)
T TIGR02030 215 VERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGR 294 (337)
T ss_pred HHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 987432100 0 00111 22333444433667777889999999999999
Q ss_pred CccCHHHHHHHHHHHhccc
Q 003696 580 EKLTATELEFAKDRILMGT 598 (802)
Q Consensus 580 ~~It~edle~A~~ril~g~ 598 (802)
+.|+.+|+..+..-++...
T Consensus 295 ~~V~~dDv~~~a~~vL~HR 313 (337)
T TIGR02030 295 TEVTVDDIRRVAVLALRHR 313 (337)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999888776654
No 139
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=4.4e-12 Score=140.57 Aligned_cols=189 Identities=18% Similarity=0.219 Sum_probs=128.5
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCC-------CeeEe---
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-------PFFYR--- 422 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~-------pfi~i--- 422 (802)
.+..|++|+|++++++.|...+. .++.|..+||+||+|+|||++|+.+|+.+.+ |....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~-----------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYR-----------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHH-----------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 45689999999999999988886 5788999999999999999999999998755 21110
Q ss_pred -ecc-----------chh---hhh--------hhhhHHHHHHHHHHHH----hcCCcEEEEcchhhhccccccCCcchHH
Q 003696 423 -AGS-----------EFE---EMF--------VGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKK 475 (802)
Q Consensus 423 -s~s-----------e~~---e~~--------vG~~~k~vr~lF~~Ar----~~aP~ILfIDEIDaLg~~r~~~~~~~~~ 475 (802)
.|. ++. ..+ ...+.+.+|++-+... .....|++|||+|.| ...
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l----------~~~ 156 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM----------NRN 156 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc----------CHH
Confidence 111 110 000 0011234444433322 234569999999999 356
Q ss_pred HHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcC
Q 003696 476 TLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGT 555 (802)
Q Consensus 476 tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t 555 (802)
..|.||..++.. ..+.++|..|+.|+.+.+.+++ |+ ..+.+++|+.++..++|+....... .++..+..+++.+
T Consensus 157 aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~~s 230 (351)
T PRK09112 157 AANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQRS 230 (351)
T ss_pred HHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHHHc
Confidence 788999999863 3344555556778888899876 88 6999999999999999987543222 1122355666666
Q ss_pred CCCCHHHHHHHHHH
Q 003696 556 PGFNGADLANLVNI 569 (802)
Q Consensus 556 ~G~SgaDL~nLvn~ 569 (802)
.| +++...++++.
T Consensus 231 ~G-~pr~Al~ll~~ 243 (351)
T PRK09112 231 KG-SVRKALLLLNY 243 (351)
T ss_pred CC-CHHHHHHHHhc
Confidence 54 56655555543
No 140
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.42 E-value=3.7e-12 Score=153.49 Aligned_cols=197 Identities=25% Similarity=0.354 Sum_probs=131.9
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCc-eEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhh-----h
Q 003696 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPK-GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-----F 431 (802)
Q Consensus 358 dDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~Pk-gVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~-----~ 431 (802)
+.|+|++++++.+.+.+...+..-. ....|. .+||+||||||||++|+++|..++.+++.++++++.+. .
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~----~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~l 529 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLG----NPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRL 529 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCC----CCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHH
Confidence 3589999999998887765322100 112344 48999999999999999999999999999999987652 2
Q ss_pred hhh-----hHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc---------cCCCEEEEe
Q 003696 432 VGV-----GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGIILMA 497 (802)
Q Consensus 432 vG~-----~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~---------~~~~VIVIa 497 (802)
.|. +......+.+..+.+..+||||||||.+. ....+.|+..||... .-.+.++|+
T Consensus 530 ig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~----------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~ 599 (731)
T TIGR02639 530 IGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH----------PDIYNILLQVMDYATLTDNNGRKADFRNVILIM 599 (731)
T ss_pred hcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC----------HHHHHHHHHhhccCeeecCCCcccCCCCCEEEE
Confidence 221 11122334445556667899999999882 467778888777531 113578888
Q ss_pred ecCCCC-------------------------CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccC-------CCC--
Q 003696 498 ATNLPD-------------------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-------PLA-- 543 (802)
Q Consensus 498 ATN~pe-------------------------~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~-------~l~-- 543 (802)
|||... .+.|.++ +|||.+|.|.+.+.++..+|++..+++. .+.
T Consensus 600 Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~--~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~ 677 (731)
T TIGR02639 600 TSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFR--NRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLE 677 (731)
T ss_pred CCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHH--hcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 988632 1344555 4999999999999999999999887532 111
Q ss_pred -CcccHHHHHhc--CCCCCHHHHHHHHHHH
Q 003696 544 -DDVDVKAIARG--TPGFNGADLANLVNIA 570 (802)
Q Consensus 544 -~dvdl~~LA~~--t~G~SgaDL~nLvn~A 570 (802)
++..++.|+.. .+.+-.+.|+.+++.-
T Consensus 678 i~~~a~~~La~~~~~~~~GaR~l~r~i~~~ 707 (731)
T TIGR02639 678 LTDDAKKYLAEKGYDEEFGARPLARVIQEE 707 (731)
T ss_pred eCHHHHHHHHHhCCCcccCchHHHHHHHHH
Confidence 12224455543 3344556666666543
No 141
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.42 E-value=1.6e-12 Score=156.15 Aligned_cols=166 Identities=22% Similarity=0.311 Sum_probs=116.4
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhh-----hhh
Q 003696 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-----FVG 433 (802)
Q Consensus 359 DViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~-----~vG 433 (802)
.|+|++++++.|.+.+...+..-. . ..++...+||+||||||||.+|+++|..++.+|+.++++++.+. +.|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~--~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG--H-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc--C-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 389999999999998875432110 0 01222469999999999999999999999999999999987542 222
Q ss_pred hh-----HHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccc--cc-------CCCEEEEeec
Q 003696 434 VG-----ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--EQ-------NEGIILMAAT 499 (802)
Q Consensus 434 ~~-----~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~--~~-------~~~VIVIaAT 499 (802)
.. ...-..+....+.+..+||||||||.+. ..+++.||..||.- .. -.++++|+||
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~----------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~Ts 605 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH----------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhh----------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeC
Confidence 11 1111123333455566899999999993 45777788877632 11 1357899999
Q ss_pred CCC-------------------------CCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc
Q 003696 500 NLP-------------------------DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 539 (802)
Q Consensus 500 N~p-------------------------e~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~ 539 (802)
|.- ..+.|.++. |+|.+|.|++.+.++..+|+..++.+
T Consensus 606 N~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 606 NAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred CcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 932 124455555 99999999999999999998877643
No 142
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.41 E-value=2.6e-12 Score=152.44 Aligned_cols=215 Identities=26% Similarity=0.317 Sum_probs=141.8
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc--------------------
Q 003696 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------------------- 415 (802)
Q Consensus 356 tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea-------------------- 415 (802)
.|.+|+|++.+|..|.-... +|. ..||||+||||||||++|++++.-+
T Consensus 2 pf~~ivGq~~~~~al~~~av---~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV---DPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhh---CCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 48999999999877744332 221 1379999999999999999999876
Q ss_pred ---------------CCCeeEeeccchhhhhhhhh--HHHH--------HHHHHHHHhcCCcEEEEcchhhhccccccCC
Q 003696 416 ---------------GVPFFYRAGSEFEEMFVGVG--ARRV--------RSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE 470 (802)
Q Consensus 416 ---------------g~pfi~is~se~~e~~vG~~--~k~v--------r~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~ 470 (802)
..||+.+.++......+|.. .+.+ ..++..| ...|||||||+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~------- 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLD------- 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCC-------
Confidence 35676665554333333321 0000 0111111 12499999999993
Q ss_pred cchHHHHHHHHHHhccc-----------ccCCCEEEEeecCCC-CCCChhhcCCCccceEEEccCCC-HHHHHHHHHHHh
Q 003696 471 GHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLP-DILDPALTRPGRFDRHIVVPNPD-VRGRQEILELYL 537 (802)
Q Consensus 471 ~~~~~tLnqLL~eLDg~-----------~~~~~VIVIaATN~p-e~LD~ALlRpGRFdr~I~v~lPd-~eeR~~ILk~~l 537 (802)
..+++.|+..|+.- ....++++|+++|.. ..|.++|+. ||+.+|.++.|. .+++.+|++...
T Consensus 140 ---~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 140 ---DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred ---HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence 56778888877531 112458999999854 368889988 999999988764 577777776543
Q ss_pred ccCC-------------------------CC-----CcccHHHHHhcC--CCC-CHHHHHHHHHHHHHHHHHhCCCccCH
Q 003696 538 QDKP-------------------------LA-----DDVDVKAIARGT--PGF-NGADLANLVNIAAIKAAVDGGEKLTA 584 (802)
Q Consensus 538 ~~~~-------------------------l~-----~dvdl~~LA~~t--~G~-SgaDL~nLvn~Aa~~Aa~~~~~~It~ 584 (802)
.... +. ++..+..++..+ -|. +.+....+++.|...|+.++++.|+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~ 294 (633)
T TIGR02442 215 AFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTA 294 (633)
T ss_pred hhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCH
Confidence 2100 00 111122222222 133 45666678888889999999999999
Q ss_pred HHHHHHHHHHhcc
Q 003696 585 TELEFAKDRILMG 597 (802)
Q Consensus 585 edle~A~~ril~g 597 (802)
+|+..|+.-++..
T Consensus 295 ~Dv~~A~~lvL~h 307 (633)
T TIGR02442 295 EDVREAAELVLPH 307 (633)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999988754
No 143
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=5.1e-12 Score=140.80 Aligned_cols=185 Identities=17% Similarity=0.186 Sum_probs=127.5
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCe-------e-----
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF-------F----- 420 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pf-------i----- 420 (802)
.+.+|++|+|++++++.|.+.+. .+++|+.+||+||+|+||+++|.++|+.+.+.- .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~-----------~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYR-----------SGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 45689999999999999998876 578899999999999999999999999763210 0
Q ss_pred ---Eeec-----------cchhhhhh---h--------hhHHHHHHHHHHHH----hcCCcEEEEcchhhhccccccCCc
Q 003696 421 ---YRAG-----------SEFEEMFV---G--------VGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEG 471 (802)
Q Consensus 421 ---~is~-----------se~~e~~v---G--------~~~k~vr~lF~~Ar----~~aP~ILfIDEIDaLg~~r~~~~~ 471 (802)
.-.| .++..... + .....+|++-..+. ...|.|++|||+|.+
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m--------- 153 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM--------- 153 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc---------
Confidence 0000 01100000 0 12244555554433 345789999999999
Q ss_pred chHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHH
Q 003696 472 HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAI 551 (802)
Q Consensus 472 ~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~L 551 (802)
.....|.||..++. ...+.++|.+|+.++.+.+.+++ |+ ..+.+++|+.++..+++...... ..+..+..+
T Consensus 154 -~~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~~l 224 (365)
T PRK07471 154 -NANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPRAAL 224 (365)
T ss_pred -CHHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHHHHHHH
Confidence 35788999999984 44456777788889889888876 76 68899999999999999876421 112223456
Q ss_pred HhcCCCCCHHHHHHHH
Q 003696 552 ARGTPGFNGADLANLV 567 (802)
Q Consensus 552 A~~t~G~SgaDL~nLv 567 (802)
++.+.| ++....+++
T Consensus 225 ~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 225 AALAEG-SVGRALRLA 239 (365)
T ss_pred HHHcCC-CHHHHHHHh
Confidence 665554 554444444
No 144
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.41 E-value=5e-12 Score=117.48 Aligned_cols=120 Identities=44% Similarity=0.661 Sum_probs=83.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhhhhhHHH---HHHHHHHHHhcCCcEEEEcchhhhcc
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGARR---VRSLFQAAKKKAPCIIFIDEIDAVGS 464 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~vG~~~k~---vr~lF~~Ar~~aP~ILfIDEIDaLg~ 464 (802)
.++++++||||||||++++.+++.+ +.+++++++.++........... ....+.......+.+|+|||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4589999999999999999999998 89999999887655433222111 12223334455688999999998821
Q ss_pred ccccCCcchHHHHHHHHHHhccccc----CCCEEEEeecCCCC--CCChhhcCCCccceEEEcc
Q 003696 465 TRKQWEGHTKKTLHQLLVEMDGFEQ----NEGIILMAATNLPD--ILDPALTRPGRFDRHIVVP 522 (802)
Q Consensus 465 ~r~~~~~~~~~tLnqLL~eLDg~~~----~~~VIVIaATN~pe--~LD~ALlRpGRFdr~I~v~ 522 (802)
.....++..+..+.. ..++.+|+++|... .+++.+.. ||+.++.++
T Consensus 99 ----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 99 ----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred ----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 223344444443322 46788888888776 67777776 898777765
No 145
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.40 E-value=1.3e-11 Score=129.44 Aligned_cols=192 Identities=20% Similarity=0.334 Sum_probs=134.8
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccch
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 427 (802)
Q Consensus 351 ~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~ 427 (802)
....+.+++++|+++.|+.|.+-...+. .+.+..++||+|++|||||+++||+..+. |..++.+...++
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl--------~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFL--------QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHH--------cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 3456789999999999999988765433 24567899999999999999999999865 677888877665
Q ss_pred hhhhhhhhHHHHHHHHHHHHhc-CCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccc--ccCCCEEEEeecCCCCC
Q 003696 428 EEMFVGVGARRVRSLFQAAKKK-APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--EQNEGIILMAATNLPDI 504 (802)
Q Consensus 428 ~e~~vG~~~k~vr~lF~~Ar~~-aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~--~~~~~VIVIaATN~pe~ 504 (802)
.. +.+++...+.. .+=|||+|++- + . ........|-..|||- ....+|++.+|+|+-..
T Consensus 92 ~~---------l~~l~~~l~~~~~kFIlf~DDLs-F-e-------~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 92 GD---------LPELLDLLRDRPYKFILFCDDLS-F-E-------EGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred cc---------HHHHHHHHhcCCCCEEEEecCCC-C-C-------CCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 44 34555555532 34599999863 2 1 1233345666667764 34578999999998554
Q ss_pred CChhhc---------------------CCCccceEEEccCCCHHHHHHHHHHHhccCCCCCc-ccH----HHHHhcCCCC
Q 003696 505 LDPALT---------------------RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADD-VDV----KAIARGTPGF 558 (802)
Q Consensus 505 LD~ALl---------------------RpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~d-vdl----~~LA~~t~G~ 558 (802)
++.... -..||..++.|.+||.++..+|++++++...+.-+ .++ ...|..-.|.
T Consensus 154 v~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~R 233 (249)
T PF05673_consen 154 VPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGR 233 (249)
T ss_pred cchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCC
Confidence 432111 12489999999999999999999999987665533 122 2234445567
Q ss_pred CHHHHHHHHH
Q 003696 559 NGADLANLVN 568 (802)
Q Consensus 559 SgaDL~nLvn 568 (802)
||+-..+.++
T Consensus 234 SGRtA~QF~~ 243 (249)
T PF05673_consen 234 SGRTARQFID 243 (249)
T ss_pred CHHHHHHHHH
Confidence 7776666654
No 146
>PRK09087 hypothetical protein; Validated
Probab=99.39 E-value=4.9e-12 Score=132.19 Aligned_cols=171 Identities=19% Similarity=0.193 Sum_probs=119.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcc
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH 472 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~ 472 (802)
.++|+||+|+|||+|+++++...++. +++..++...+. ..... .+|+|||+|.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~~-----------~~~~~---~~l~iDDi~~~~~-------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDAA-----------NAAAE---GPVLIEDIDAGGF-------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHHH-----------Hhhhc---CeEEEECCCCCCC--------
Confidence 59999999999999999999887655 444434333221 11111 4899999998732
Q ss_pred hHHHHHHHHHHhcccccCCCEEEEeecCCCCCC---ChhhcCCCccc--eEEEccCCCHHHHHHHHHHHhccCCCC-Ccc
Q 003696 473 TKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL---DPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPLA-DDV 546 (802)
Q Consensus 473 ~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~L---D~ALlRpGRFd--r~I~v~lPd~eeR~~ILk~~l~~~~l~-~dv 546 (802)
.+.. |+..++....++..+||+++..|..+ .+.|++ ||. ..+.+..|+.+.|.+|++.+++...+. ++.
T Consensus 102 ~~~~---lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~e 176 (226)
T PRK09087 102 DETG---LFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPH 176 (226)
T ss_pred CHHH---HHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 1233 44444444455567777777666533 567776 886 589999999999999999999876554 344
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003696 547 DVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 594 (802)
Q Consensus 547 dl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~ri 594 (802)
.+..|++...| +.+.+..+++.....+...+ ..||...+++++..+
T Consensus 177 v~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 177 VVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 47888888774 67777777776665554444 679999998887754
No 147
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.39 E-value=2.5e-11 Score=131.64 Aligned_cols=97 Identities=20% Similarity=0.200 Sum_probs=76.4
Q ss_pred EEEeecCC------------CCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCH
Q 003696 494 ILMAATNL------------PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNG 560 (802)
Q Consensus 494 IVIaATN~------------pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~Sg 560 (802)
|+|.|||+ |.-++..|+. |+ ..|...+.+.++.++|++..++...+. ++..++.++....--|-
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSL 398 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSL 398 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhH
Confidence 56667775 5566777764 44 367777889999999999999876655 44457888877766777
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003696 561 ADLANLVNIAAIKAAVDGGEKLTATELEFAKDR 593 (802)
Q Consensus 561 aDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~r 593 (802)
+=..+|+.-|...|.+++...|..+|++.|.+-
T Consensus 399 RYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 399 RYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred HHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 778889999999999999999999999999764
No 148
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=1.2e-11 Score=134.84 Aligned_cols=169 Identities=15% Similarity=0.264 Sum_probs=120.5
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC--------eeEeeccch
Q 003696 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP--------FFYRAGSEF 427 (802)
Q Consensus 356 tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p--------fi~is~se~ 427 (802)
+|+||+|++.+++.|...+. .++.|+.+||+||+|+|||++|+++|+.+.+. +..+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--
Confidence 69999999999999988875 56788899999999999999999999976432 2222211
Q ss_pred hhhhhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCC
Q 003696 428 EEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (802)
Q Consensus 428 ~e~~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe 503 (802)
.. ...+...+|++.+.+.. ....|++||++|.+ .....|.||..++. +..++++|.+|+.++
T Consensus 69 ~~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m----------~~~a~naLLK~LEe--pp~~t~~il~~~~~~ 134 (313)
T PRK05564 69 NK--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM----------TEQAQNAFLKTIEE--PPKGVFIILLCENLE 134 (313)
T ss_pred cC--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhc----------CHHHHHHHHHHhcC--CCCCeEEEEEeCChH
Confidence 00 01123456666654432 23459999999999 35688999999995 445556666667789
Q ss_pred CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCC
Q 003696 504 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPG 557 (802)
Q Consensus 504 ~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G 557 (802)
.|-+.+++ |+ ..+.++.|+.++....++..... . ++.++..++..+.|
T Consensus 135 ~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g 182 (313)
T PRK05564 135 QILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDG 182 (313)
T ss_pred hCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCC
Confidence 99999987 76 58999999999988888765431 1 22334555655554
No 149
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.35 E-value=7e-12 Score=129.37 Aligned_cols=213 Identities=18% Similarity=0.242 Sum_probs=138.1
Q ss_pred ccccccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCC-----C
Q 003696 344 LNKEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-----P 418 (802)
Q Consensus 344 ~~~~~~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~-----p 418 (802)
...+|+.++.+..+.||+|.++..+.|+-+.. .+..| +++|.|||||||||-+.++|+++=. -
T Consensus 13 ~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~-----------~gnmP-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~ 80 (333)
T KOG0991|consen 13 YQLPWVEKYRPSVLQDIVGNEDTVERLSVIAK-----------EGNMP-NLIISGPPGTGKTTSILCLARELLGDSYKEA 80 (333)
T ss_pred ccchHHHhhCchHHHHhhCCHHHHHHHHHHHH-----------cCCCC-ceEeeCCCCCchhhHHHHHHHHHhChhhhhH
Confidence 34457888889999999999999998877765 45677 8999999999999999999998733 3
Q ss_pred eeEeeccchhhhhhhhhHHHHHHHHHHHHhc-CC---cEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEE
Q 003696 419 FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK-AP---CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGII 494 (802)
Q Consensus 419 fi~is~se~~e~~vG~~~k~vr~lF~~Ar~~-aP---~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VI 494 (802)
++.+++|+-.. ..+...++ ..|.+-+-. .| .||++||.|++. ..++..|-+.|+-+....++.
T Consensus 81 vLELNASdeRG--IDvVRn~I-K~FAQ~kv~lp~grhKIiILDEADSMT----------~gAQQAlRRtMEiyS~ttRFa 147 (333)
T KOG0991|consen 81 VLELNASDERG--IDVVRNKI-KMFAQKKVTLPPGRHKIIILDEADSMT----------AGAQQALRRTMEIYSNTTRFA 147 (333)
T ss_pred hhhccCccccc--cHHHHHHH-HHHHHhhccCCCCceeEEEeeccchhh----------hHHHHHHHHHHHHHcccchhh
Confidence 56677766332 22222233 345544432 22 499999999993 345566777777666655544
Q ss_pred EEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 003696 495 LMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIK 573 (802)
Q Consensus 495 VIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~ 573 (802)
.+||..+.+=..+.+ |+. .+.+...+..+...-|....+..... .+..++.|.-... +|.++.+|.. .
T Consensus 148 --laCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~----GDMRQalNnL--Q 216 (333)
T KOG0991|consen 148 --LACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQ----GDMRQALNNL--Q 216 (333)
T ss_pred --hhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhcc----chHHHHHHHH--H
Confidence 467777766555554 442 33444455555555444444444443 2334666665444 4888888764 3
Q ss_pred HHHhCCCccCHHHHHHHHH
Q 003696 574 AAVDGGEKLTATELEFAKD 592 (802)
Q Consensus 574 Aa~~~~~~It~edle~A~~ 592 (802)
+...+-..|+.+.+-..++
T Consensus 217 st~~g~g~Vn~enVfKv~d 235 (333)
T KOG0991|consen 217 STVNGFGLVNQENVFKVCD 235 (333)
T ss_pred HHhccccccchhhhhhccC
Confidence 5556667777776654443
No 150
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.34 E-value=2.4e-11 Score=140.91 Aligned_cols=215 Identities=22% Similarity=0.281 Sum_probs=145.2
Q ss_pred ccccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhh----hc-------------------CCCCCceEEEEccCCC
Q 003696 346 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFT----RL-------------------GGKLPKGILLTGAPGT 402 (802)
Q Consensus 346 ~~~~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~----~l-------------------G~~~PkgVLL~GPPGT 402 (802)
+.|+++..+..|.|+.|.+.+-..+..++... ++..|. ++ +.+.-|-+||+||||-
T Consensus 259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~W-D~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQW-DPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred ceeecccChhHHHHHhcchhHHHHHHHHHHhh-cHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 46888889999999999999877766555431 222332 11 1122267899999999
Q ss_pred cHHHHHHHHHHhcCCCeeEeeccchhhhhhhhhHHHHHHHHHHH----HhcCCcEEEEcchhhhccccccCCcchHHHHH
Q 003696 403 GKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLH 478 (802)
Q Consensus 403 GKT~LArALA~eag~pfi~is~se~~e~~vG~~~k~vr~lF~~A----r~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLn 478 (802)
||||||+.+|+.+|..++.|++|+-... ....+++..+...- ....|.+|+|||||.-. ...++
T Consensus 338 GKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~----------~~~Vd 405 (877)
T KOG1969|consen 338 GKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP----------RAAVD 405 (877)
T ss_pred ChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc----------HHHHH
Confidence 9999999999999999999999985442 22223333332221 12579999999999652 33444
Q ss_pred HHHHHhccc------ccC----------C---CEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc
Q 003696 479 QLLVEMDGF------EQN----------E---GIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 539 (802)
Q Consensus 479 qLL~eLDg~------~~~----------~---~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~ 539 (802)
.++..+..- .+. . .--|||.|| +.--|+|+----|..++.|.+|...-..+-|+..+..
T Consensus 406 vilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICN--dLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~r 483 (877)
T KOG1969|consen 406 VILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICN--DLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHR 483 (877)
T ss_pred HHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEec--CccchhhhhcccceEEEEecCCChhHHHHHHHHHHhh
Confidence 444443310 111 0 135778888 5556777532248889999999999988999988887
Q ss_pred CCCCCc-ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 003696 540 KPLADD-VDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG 579 (802)
Q Consensus 540 ~~l~~d-vdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~ 579 (802)
..+..+ ..+..|+.. +..||++.+|.....+....+
T Consensus 484 E~mr~d~~aL~~L~el----~~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 484 ENMRADSKALNALCEL----TQNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred hcCCCCHHHHHHHHHH----hcchHHHHHHHHHHHHHhccc
Confidence 776533 234555554 455999999999988876543
No 151
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.34 E-value=3.6e-12 Score=144.83 Aligned_cols=210 Identities=27% Similarity=0.392 Sum_probs=136.7
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHh---cCCCeeEeeccchhhh
Q 003696 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGSEFEEM 430 (802)
Q Consensus 354 ~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~e---ag~pfi~is~se~~e~ 430 (802)
..+|+||+|..++..++.+.+... .+.+-.|||.|.+||||.++|+++.+. .+.||+.++|..+-+.
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~ 310 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPET 310 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHH
Confidence 358999999999988887777633 344558999999999999999999875 4789999999876443
Q ss_pred -------------hhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccc-----c----
Q 003696 431 -------------FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF-----E---- 488 (802)
Q Consensus 431 -------------~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~-----~---- 488 (802)
|.|....--..+|+.|... -||+|||..|. ...+..||..+..- .
T Consensus 311 LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgemp----------l~LQaKLLRVLQEkei~rvG~t~~ 377 (560)
T COG3829 311 LLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMP----------LPLQAKLLRVLQEKEIERVGGTKP 377 (560)
T ss_pred HHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCC----------HHHHHHHHHHHhhceEEecCCCCc
Confidence 2222211133455555544 89999999883 45666677665431 1
Q ss_pred cCCCEEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhc----cCCCC-Cccc---HH
Q 003696 489 QNEGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQ----DKPLA-DDVD---VK 549 (802)
Q Consensus 489 ~~~~VIVIaATN~pe~LD~ALlRpGRFdr-------~I~v~lPd~eeR~~----ILk~~l~----~~~l~-~dvd---l~ 549 (802)
....|-|||||| ..|-.++.. |||.. ++.+..|..++|.+ +..+++. +.+.. ..+. +.
T Consensus 378 ~~vDVRIIAATN--~nL~~~i~~-G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~ 454 (560)
T COG3829 378 IPVDVRIIAATN--RNLEKMIAE-GTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALA 454 (560)
T ss_pred eeeEEEEEeccC--cCHHHHHhc-CcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHH
Confidence 123589999999 455555543 55543 67777888888865 3333333 22211 1122 33
Q ss_pred HHHhc-CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH-HHHH
Q 003696 550 AIARG-TPGFNGADLANLVNIAAIKAAVDGGEKLTATELE-FAKD 592 (802)
Q Consensus 550 ~LA~~-t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle-~A~~ 592 (802)
.+.+. -+| +.++|+|++.++...+ .....|+.+|+. .++.
T Consensus 455 ~L~~y~WPG-NVRELeNviER~v~~~--~~~~~I~~~~lp~~~l~ 496 (560)
T COG3829 455 LLLRYDWPG-NVRELENVIERAVNLV--ESDGLIDADDLPAFALE 496 (560)
T ss_pred HHHhCCCCc-hHHHHHHHHHHHHhcc--CCcceeehhhcchhhhc
Confidence 33333 333 6789999999887643 334458888876 4443
No 152
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.32 E-value=1.1e-11 Score=143.93 Aligned_cols=208 Identities=24% Similarity=0.312 Sum_probs=130.4
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHh-----------cCCCeeEee
Q 003696 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE-----------AGVPFFYRA 423 (802)
Q Consensus 355 ~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~e-----------ag~pfi~is 423 (802)
.+|++++|.+.+.+.+.+.+..+... +..|||+|++||||+++|+++... .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 46999999999988888887644322 347999999999999999999876 467999999
Q ss_pred ccchhhhhh-----hh------hH--HHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc--
Q 003696 424 GSEFEEMFV-----GV------GA--RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-- 488 (802)
Q Consensus 424 ~se~~e~~v-----G~------~~--k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~-- 488 (802)
|..+.+... |. ++ ..-..+|+.|.. ..||||||+.|. ...+..|+..++.-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp----------~~~Q~kLl~~L~e~~~~ 352 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMP----------LPLQTRLLRVLEEKEVT 352 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCC----------HHHHHHHHhhhhcCeEE
Confidence 988744311 10 00 011234554432 489999999993 455666776665311
Q ss_pred -------cCCCEEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhcc----CCCCCcc
Q 003696 489 -------QNEGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQD----KPLADDV 546 (802)
Q Consensus 489 -------~~~~VIVIaATN~pe~LD~ALlRpGRFdr-------~I~v~lPd~eeR~~----ILk~~l~~----~~l~~dv 546 (802)
...++.+|++||. .|...+ ..|+|.. .+.+..|..++|.+ ++++++++ ....-..
T Consensus 353 r~G~~~~~~~dvRiIaat~~--~L~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~ 429 (538)
T PRK15424 353 RVGGHQPVPVDVRVISATHC--DLEEDV-RQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSA 429 (538)
T ss_pred ecCCCceeccceEEEEecCC--CHHHHH-hcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCH
Confidence 1124678999984 333322 2244442 46677788877764 55566544 2221111
Q ss_pred c-H-------HHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003696 547 D-V-------KAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 588 (802)
Q Consensus 547 d-l-------~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle 588 (802)
+ + ..+....=-.+.++|+|++++++..+.......|+.+++.
T Consensus 430 ~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 430 ALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 1 1 2233332223678999999988876543333567777664
No 153
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.32 E-value=3e-11 Score=130.22 Aligned_cols=213 Identities=21% Similarity=0.326 Sum_probs=138.2
Q ss_pred ccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---------CCCeeEeeccch---
Q 003696 360 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF--- 427 (802)
Q Consensus 360 ViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---------g~pfi~is~se~--- 427 (802)
.+|+..+++.|..+.+.+..|.. .++| ++||+|++|.|||++++.++... .+|++++....-
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~-----~Rmp-~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKR-----HRMP-NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcc-----cCCC-ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 49999999999999998988865 4566 89999999999999999998744 357777765321
Q ss_pred hhhh------hhh-------hHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccccc--CCC
Q 003696 428 EEMF------VGV-------GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ--NEG 492 (802)
Q Consensus 428 ~e~~------vG~-------~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~--~~~ 492 (802)
..-| .|. ..+.-..+....+...+.+|+|||++.+..... ..+..+|+.+..+.. +-.
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~-------~~qr~~Ln~LK~L~NeL~ip 182 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY-------RKQREFLNALKFLGNELQIP 182 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH-------HHHHHHHHHHHHHhhccCCC
Confidence 1111 011 112223344555667788999999999754221 112223333222222 234
Q ss_pred EEEEeecCCCC--CCChhhcCCCccceEEEcc-CCCHHHHHHHHHHHhccCCCCC--ccc----HHHHHhcCCCCCHHHH
Q 003696 493 IILMAATNLPD--ILDPALTRPGRFDRHIVVP-NPDVRGRQEILELYLQDKPLAD--DVD----VKAIARGTPGFNGADL 563 (802)
Q Consensus 493 VIVIaATN~pe--~LD~ALlRpGRFdr~I~v~-lPd~eeR~~ILk~~l~~~~l~~--dvd----l~~LA~~t~G~SgaDL 563 (802)
++.+|+..--. .-|+.+.+ ||+. +.+| ....++...++..+-...++.. +.. ...|-..+.| +.+++
T Consensus 183 iV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G-~iG~l 258 (302)
T PF05621_consen 183 IVGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEG-LIGEL 258 (302)
T ss_pred eEEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCC-chHHH
Confidence 55555433222 23677776 9964 3444 3344566677777766555442 222 2445566666 45699
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHH
Q 003696 564 ANLVNIAAIKAAVDGGEKLTATELEF 589 (802)
Q Consensus 564 ~nLvn~Aa~~Aa~~~~~~It~edle~ 589 (802)
.++++.|+..|.+.|.+.||.+.++.
T Consensus 259 ~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 259 SRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred HHHHHHHHHHHHhcCCceecHHHHhh
Confidence 99999999999999999999998864
No 154
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=2.6e-11 Score=132.69 Aligned_cols=183 Identities=13% Similarity=0.167 Sum_probs=127.1
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCe----------eEeecc
Q 003696 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF----------FYRAGS 425 (802)
Q Consensus 356 tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pf----------i~is~s 425 (802)
.|++|+|++++++.|...+. .+++|..+||+||+|+||+++|+++|+.+.+.- ...+.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~-----------~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIK-----------QNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 59999999999999999886 567888999999999999999999999763321 011111
Q ss_pred chhh--------------hh---hh--------hhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHH
Q 003696 426 EFEE--------------MF---VG--------VGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKT 476 (802)
Q Consensus 426 e~~e--------------~~---vG--------~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~t 476 (802)
++.- .+ .| .....+|++.+.+.. ....|++||++|.+ ....
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m----------~~~a 140 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM----------NEAA 140 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc----------CHHH
Confidence 2110 00 00 112345666554432 33469999999999 3578
Q ss_pred HHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCC
Q 003696 477 LHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTP 556 (802)
Q Consensus 477 LnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~ 556 (802)
.|.||..|+... + .++|..|+.++.|-+.+++ |+ ..+.|++|+.++..++|+....... .+.+...++....
T Consensus 141 aNaLLK~LEEPp-~--~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~a~ 212 (314)
T PRK07399 141 ANALLKTLEEPG-N--GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLALAQ 212 (314)
T ss_pred HHHHHHHHhCCC-C--CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHHcC
Confidence 899999998654 2 3455667788999999987 76 6899999999999999987643221 1223466776665
Q ss_pred CCCHHHHHHHHH
Q 003696 557 GFNGADLANLVN 568 (802)
Q Consensus 557 G~SgaDL~nLvn 568 (802)
| +++...++++
T Consensus 213 G-s~~~al~~l~ 223 (314)
T PRK07399 213 G-SPGAAIANIE 223 (314)
T ss_pred C-CHHHHHHHHH
Confidence 5 5655555554
No 155
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.28 E-value=8.1e-11 Score=118.65 Aligned_cols=145 Identities=18% Similarity=0.271 Sum_probs=101.0
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHhcCCC------------------------eeEeeccchhhhhhhhhHHHHHHHH
Q 003696 388 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------------------FFYRAGSEFEEMFVGVGARRVRSLF 443 (802)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArALA~eag~p------------------------fi~is~se~~e~~vG~~~k~vr~lF 443 (802)
.++|..+||+||+|+|||++|++++..+... +..+.... ...+.+.++++.
T Consensus 11 ~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~ 85 (188)
T TIGR00678 11 GRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELV 85 (188)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHH
Confidence 5678899999999999999999999987542 11111110 011234566666
Q ss_pred HHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEE
Q 003696 444 QAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHI 519 (802)
Q Consensus 444 ~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I 519 (802)
+.+.. ....||+|||+|.+. ...++.||..|+.. +...++|.+||.+..|.+++++ |+ ..+
T Consensus 86 ~~~~~~~~~~~~kviiide~~~l~----------~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~~~ 150 (188)
T TIGR00678 86 EFLSRTPQESGRRVVIIEDAERMN----------EAAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-QVL 150 (188)
T ss_pred HHHccCcccCCeEEEEEechhhhC----------HHHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-EEe
Confidence 65543 335699999999993 45678899998863 3344555566777899999987 76 589
Q ss_pred EccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCC
Q 003696 520 VVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPG 557 (802)
Q Consensus 520 ~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G 557 (802)
.+++|+.++..++++.. .. ++..+..++..+.|
T Consensus 151 ~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g 183 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGG 183 (188)
T ss_pred eCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCC
Confidence 99999999999999876 22 23345566665544
No 156
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.28 E-value=1.4e-11 Score=139.82 Aligned_cols=205 Identities=25% Similarity=0.330 Sum_probs=136.5
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhh
Q 003696 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF 431 (802)
Q Consensus 355 ~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~ 431 (802)
..+.+++|...+.+++.+.+..+...+. .||++|++||||.++||+|.... +.||+.++|..+-+..
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a----------~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDA----------SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCC----------CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4688999999999999999987665443 79999999999999999997754 6799999998774432
Q ss_pred -----hhh------h-HHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccc-----cc----C
Q 003696 432 -----VGV------G-ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF-----EQ----N 490 (802)
Q Consensus 432 -----vG~------~-~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~-----~~----~ 490 (802)
.|. + ..+-...|+.|.. ..||||||..|. ...+..||..+..- .. +
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mp----------l~~Q~kLLRvLqe~~~~rvG~~~~i~ 274 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMP----------LELQVKLLRVLQEREFERVGGNKPIK 274 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCC----------HHHHHHHHHHHHcCeeEecCCCcccc
Confidence 111 0 0111234544444 399999999983 45666777766531 11 2
Q ss_pred CCEEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhcc----CC-CCCcccHHHHHhc
Q 003696 491 EGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQD----KP-LADDVDVKAIARG 554 (802)
Q Consensus 491 ~~VIVIaATN~pe~LD~ALlRpGRFdr-------~I~v~lPd~eeR~~----ILk~~l~~----~~-l~~dvdl~~LA~~ 554 (802)
-.|-||+||| .+|...+.. |||.. ++.+..|..++|.+ ++++++++ .. -...++-+.+...
T Consensus 275 vdvRiIaaT~--~dL~~~v~~-G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L 351 (464)
T COG2204 275 VDVRIIAATN--RDLEEEVAA-GRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAAL 351 (464)
T ss_pred eeeEEEeecC--cCHHHHHHc-CCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 3588999999 455555443 66643 77888899998876 55555543 22 2244555555555
Q ss_pred CCCCCH---HHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003696 555 TPGFNG---ADLANLVNIAAIKAAVDGGEKLTATELE 588 (802)
Q Consensus 555 t~G~Sg---aDL~nLvn~Aa~~Aa~~~~~~It~edle 588 (802)
+..-.+ ++|+|++++++ .......|+.+++.
T Consensus 352 ~~y~WPGNVREL~N~ver~~---il~~~~~i~~~~l~ 385 (464)
T COG2204 352 LAYDWPGNVRELENVVERAV---ILSEGPEIEVEDLP 385 (464)
T ss_pred HhCCCChHHHHHHHHHHHHH---hcCCccccchhhcc
Confidence 554444 55555555554 44466778877764
No 157
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.28 E-value=1.2e-10 Score=127.80 Aligned_cols=134 Identities=29% Similarity=0.326 Sum_probs=92.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhhhhHHHHHHH------HHHHHh--cCC--cEEEEcchhh
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSL------FQAAKK--KAP--CIIFIDEIDA 461 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG~~~k~vr~l------F~~Ar~--~aP--~ILfIDEIDa 461 (802)
+++||.||||||||++|+++|..++.+|+.+.|..........+....... |..... ... +|+|+|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 379999999999999999999999999999999865443211111111111 000000 011 3999999998
Q ss_pred hccccccCCcchHHHHHHHHHHhcc----------cccCCCEEEEeecC-----CCCCCChhhcCCCccceEEEccCC-C
Q 003696 462 VGSTRKQWEGHTKKTLHQLLVEMDG----------FEQNEGIILMAATN-----LPDILDPALTRPGRFDRHIVVPNP-D 525 (802)
Q Consensus 462 Lg~~r~~~~~~~~~tLnqLL~eLDg----------~~~~~~VIVIaATN-----~pe~LD~ALlRpGRFdr~I~v~lP-d 525 (802)
.. ..+++.||..|+. +.-+.+++||+|.| ....|++|+++ ||...+.++.| +
T Consensus 124 a~----------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~ 191 (329)
T COG0714 124 AP----------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDS 191 (329)
T ss_pred CC----------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCc
Confidence 83 4677777777765 33446789999999 45578999998 99889999999 4
Q ss_pred HHHHHHHHHHHh
Q 003696 526 VRGRQEILELYL 537 (802)
Q Consensus 526 ~eeR~~ILk~~l 537 (802)
..+...++....
T Consensus 192 ~~e~~~i~~~~~ 203 (329)
T COG0714 192 EEEERIILARVG 203 (329)
T ss_pred hHHHHHHHHhCc
Confidence 444555554443
No 158
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.28 E-value=7.9e-11 Score=143.83 Aligned_cols=193 Identities=22% Similarity=0.291 Sum_probs=126.7
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCce-EEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhh---
Q 003696 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKG-ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM--- 430 (802)
Q Consensus 358 dDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~Pkg-VLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~--- 430 (802)
+.|+|++++...+.+.+...+..-. ....|.| +||+||||||||.+|+++|..+ ...++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLE----DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 4689999999988887765322111 0124555 7999999999999999999988 457889999887543
Q ss_pred ---------hhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc--c-------CCC
Q 003696 431 ---------FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--Q-------NEG 492 (802)
Q Consensus 431 ---------~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~--~-------~~~ 492 (802)
|+|.... ..+....+.+..+||+|||||.+ ....++.|+..+|.-. . -.+
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka----------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n 709 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA----------HPDVLELFYQVFDKGVMEDGEGREIDFKN 709 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc----------CHHHHHHHHHHhhcceeecCCCcEEeccc
Confidence 3332221 12334456677799999999977 3456677777776421 0 135
Q ss_pred EEEEeecCCCC-----------------------------CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccC---
Q 003696 493 IILMAATNLPD-----------------------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK--- 540 (802)
Q Consensus 493 VIVIaATN~pe-----------------------------~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~--- 540 (802)
.+||.|||... .+.|+++. |++ .|.|.+.+.++..+|++..+.+.
T Consensus 710 ~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~r 786 (852)
T TIGR03345 710 TVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARR 786 (852)
T ss_pred cEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 78888988521 13345554 887 88999999999999998877542
Q ss_pred -----CCC---CcccHHHHHhcCCC--CCHHHHHHHHHH
Q 003696 541 -----PLA---DDVDVKAIARGTPG--FNGADLANLVNI 569 (802)
Q Consensus 541 -----~l~---~dvdl~~LA~~t~G--~SgaDL~nLvn~ 569 (802)
... ++..+..|+....+ +-.+.|.++++.
T Consensus 787 l~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~ 825 (852)
T TIGR03345 787 LKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQ 825 (852)
T ss_pred HHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence 111 12224555555432 345666666654
No 159
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.28 E-value=7.7e-11 Score=127.05 Aligned_cols=178 Identities=25% Similarity=0.322 Sum_probs=117.9
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcC---------------------
Q 003696 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG--------------------- 416 (802)
Q Consensus 358 dDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag--------------------- 416 (802)
++++|.+++...+...+.. .++.|+.+||+||||||||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~----------~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALE----------SGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHh----------cCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 3567777776666655541 235676899999999999999999999886
Q ss_pred ---CCeeEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccccc
Q 003696 417 ---VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ 489 (802)
Q Consensus 417 ---~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~ 489 (802)
-.++.++.++.... ......++++-..... ....||+|||+|.+ +....|.++..++..
T Consensus 71 ~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~m----------t~~A~nallk~lEep-- 136 (325)
T COG0470 71 GNHPDFLELNPSDLRKI--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKL----------TEDAANALLKTLEEP-- 136 (325)
T ss_pred cCCCceEEecccccCCC--cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHH----------hHHHHHHHHHHhccC--
Confidence 35666666554332 1223445554444332 23469999999999 357889999999854
Q ss_pred CCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 003696 490 NEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNI 569 (802)
Q Consensus 490 ~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~ 569 (802)
.....+|.+||.++.+-+.+++ |+ ..+.|++|+...+....+ +..+..++. .+.+|++..++.
T Consensus 137 ~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e----------~~~l~~i~~----~~~gd~r~~i~~ 199 (325)
T COG0470 137 PKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE----------DQGLEEIAA----VAEGDARKAINP 199 (325)
T ss_pred CCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh----------ccchhHHHH----HHHHHHHcCCCH
Confidence 4456677788899988888887 66 577787765555444444 223444444 244566666665
Q ss_pred HHHHHHH
Q 003696 570 AAIKAAV 576 (802)
Q Consensus 570 Aa~~Aa~ 576 (802)
....+..
T Consensus 200 lq~~~~~ 206 (325)
T COG0470 200 LQALAAL 206 (325)
T ss_pred HHHHHHh
Confidence 5554443
No 160
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.28 E-value=7.2e-11 Score=136.33 Aligned_cols=208 Identities=22% Similarity=0.292 Sum_probs=131.3
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc-------------------
Q 003696 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA------------------- 415 (802)
Q Consensus 355 ~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea------------------- 415 (802)
..|+||.|++.+++.+.-.+. ....++|+||||||||++++++++-+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~--------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA--------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc--------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 479999999999776644332 22479999999999999999998632
Q ss_pred ---------CCCeeEeeccchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcc
Q 003696 416 ---------GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG 486 (802)
Q Consensus 416 ---------g~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg 486 (802)
..||....++......+|.+...-...+..|. ..+|||||++.+. ...+..|+..|+.
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~----------~~~~~~L~~~LE~ 321 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFK----------RSVLDALREPIED 321 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCC----------HHHHHHHHHHHHc
Confidence 13444333332222223322111112333332 2599999999883 3556666666653
Q ss_pred cc-----------cCCCEEEEeecCCC------C-----------------CCChhhcCCCccceEEEccCCCHHH----
Q 003696 487 FE-----------QNEGIILMAATNLP------D-----------------ILDPALTRPGRFDRHIVVPNPDVRG---- 528 (802)
Q Consensus 487 ~~-----------~~~~VIVIaATN~p------e-----------------~LD~ALlRpGRFdr~I~v~lPd~ee---- 528 (802)
.. ...++.+|+++|.- + .|...|+. |||.++.++.++..+
T Consensus 322 ~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~~ 399 (499)
T TIGR00368 322 GSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLST 399 (499)
T ss_pred CcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhcc
Confidence 21 12468899999862 1 46777777 999999998765432
Q ss_pred ---------HHHHHHH------HhccC---CCCCccc-----------------HHHHHhcCCCCCHHHHHHHHHHHHHH
Q 003696 529 ---------RQEILEL------YLQDK---PLADDVD-----------------VKAIARGTPGFNGADLANLVNIAAIK 573 (802)
Q Consensus 529 ---------R~~ILk~------~l~~~---~l~~dvd-----------------l~~LA~~t~G~SgaDL~nLvn~Aa~~ 573 (802)
|..+.+. .++.. .....+. +..... ..++|.+....+++-|.-.
T Consensus 400 ~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~-~~~lS~R~~~rilrvArTi 478 (499)
T TIGR00368 400 GSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALN-KLGLSSRATHRILKVARTI 478 (499)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHH
Confidence 2222222 11111 1111111 111122 2358999999999999999
Q ss_pred HHHhCCCccCHHHHHHHHH
Q 003696 574 AAVDGGEKLTATELEFAKD 592 (802)
Q Consensus 574 Aa~~~~~~It~edle~A~~ 592 (802)
|..++.+.|+.+|+.+|+.
T Consensus 479 AdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 479 ADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HhhcCCCCCCHHHHHHHHh
Confidence 9999999999999999874
No 161
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.28 E-value=1.6e-10 Score=131.71 Aligned_cols=213 Identities=17% Similarity=0.191 Sum_probs=129.5
Q ss_pred ccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCC--CeeEeeccc-hhhhhhhhh-
Q 003696 360 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSE-FEEMFVGVG- 435 (802)
Q Consensus 360 ViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~--pfi~is~se-~~e~~vG~~- 435 (802)
|+|.+++.+.+...+. ...+|||+||||||||++|++++...+. +|.+..+.- ......|..
T Consensus 22 i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~ 87 (498)
T PRK13531 22 LYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLS 87 (498)
T ss_pred ccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHH
Confidence 5788877665544332 1237999999999999999999997643 566554431 112222211
Q ss_pred HHHH--HHHHHHHHhc---CCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc-cC-------CCEEEEeecCC-
Q 003696 436 ARRV--RSLFQAAKKK---APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-QN-------EGIILMAATNL- 501 (802)
Q Consensus 436 ~k~v--r~lF~~Ar~~---aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~-~~-------~~VIVIaATN~- 501 (802)
.... ..-|.....+ ...+||+|||..+ ...+++.||..|+.-. .. ...++++|||.
T Consensus 88 i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~L 157 (498)
T PRK13531 88 IQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNEL 157 (498)
T ss_pred HhhhhhcCchhhhcCCccccccEEeecccccC----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCC
Confidence 1111 1223222211 2349999999876 3578888998884311 01 11344455563
Q ss_pred CC--CCChhhcCCCccceEEEccCCC-HHHHHHHHHHHhcc--CCCC--Cccc-----------------------HHHH
Q 003696 502 PD--ILDPALTRPGRFDRHIVVPNPD-VRGRQEILELYLQD--KPLA--DDVD-----------------------VKAI 551 (802)
Q Consensus 502 pe--~LD~ALlRpGRFdr~I~v~lPd-~eeR~~ILk~~l~~--~~l~--~dvd-----------------------l~~L 551 (802)
|+ ...+++.. ||-..+.+++|+ .++..+|+...... .... .-+. +..|
T Consensus 158 PE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L 235 (498)
T PRK13531 158 PEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQL 235 (498)
T ss_pred cccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHH
Confidence 22 23347776 897799999997 45557788754221 1010 0000 1222
Q ss_pred Hh---cC---CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcccc
Q 003696 552 AR---GT---PGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGTE 599 (802)
Q Consensus 552 A~---~t---~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~ril~g~~ 599 (802)
.+ .+ ...|++--..+++.|...|..+|++.|+.+|+. .+.-++....
T Consensus 236 ~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HRl 288 (498)
T PRK13531 236 RQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHDA 288 (498)
T ss_pred HHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccCH
Confidence 22 12 247899999999999999999999999999999 6666666543
No 162
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=8.4e-11 Score=139.79 Aligned_cols=205 Identities=20% Similarity=0.305 Sum_probs=142.4
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc----------CCCeeEe
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYR 422 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea----------g~pfi~i 422 (802)
....+|-|+|.++..+.+.+++. . +...+-+|.|+||+|||.++..+|... +..++.+
T Consensus 165 r~gklDPvIGRd~EI~r~iqIL~---R---------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 165 REGKLDPVIGRDEEIRRTIQILS---R---------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred hcCCCCCCcChHHHHHHHHHHHh---c---------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 34579999999987666655554 2 223467899999999999999999865 3456777
Q ss_pred eccchh--hhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecC
Q 003696 423 AGSEFE--EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (802)
Q Consensus 423 s~se~~--e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN 500 (802)
+...+. .+|.|+.+++++.+.+..++..+.||||||||.+.+.....++ .-...|-|.-.+ .++.+-+||||.
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-a~DAaNiLKPaL----ARGeL~~IGATT 307 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AMDAANLLKPAL----ARGELRCIGATT 307 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-ccchhhhhHHHH----hcCCeEEEEecc
Confidence 777664 4689999999999999999888999999999999765443222 223333333333 356788899998
Q ss_pred CCC-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCC-----cccHHHHHhcCC-----CCCHHHHHH
Q 003696 501 LPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-----DVDVKAIARGTP-----GFNGADLAN 565 (802)
Q Consensus 501 ~pe-----~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~-----dvdl~~LA~~t~-----G~SgaDL~n 565 (802)
..+ .-|+||.| || ..|.+..|+.++-..||+-.-....... |..+...+..+. -+=|.-...
T Consensus 308 ~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAID 384 (786)
T COG0542 308 LDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAID 384 (786)
T ss_pred HHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHH
Confidence 643 35999999 99 5789999999999999987654433222 222333333222 233344556
Q ss_pred HHHHHHHHHHHh
Q 003696 566 LVNIAAIKAAVD 577 (802)
Q Consensus 566 Lvn~Aa~~Aa~~ 577 (802)
++.+|+......
T Consensus 385 LiDeA~a~~~l~ 396 (786)
T COG0542 385 LLDEAGARVRLE 396 (786)
T ss_pred HHHHHHHHHHhc
Confidence 777776655443
No 163
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.26 E-value=1e-10 Score=143.11 Aligned_cols=167 Identities=23% Similarity=0.313 Sum_probs=113.9
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCC-ceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhh-
Q 003696 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLP-KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF- 431 (802)
Q Consensus 357 FdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~P-kgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~- 431 (802)
++.|+|++.+.+.+...+...+.... ....| ..+||+||||||||++|+++|..+ +.+|+.++++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS----DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc----CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 66799999999999888875431110 01123 358999999999999999999876 4689999998875432
Q ss_pred ----hhh-----hHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccc--cc-------CCCE
Q 003696 432 ----VGV-----GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--EQ-------NEGI 493 (802)
Q Consensus 432 ----vG~-----~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~--~~-------~~~V 493 (802)
.|. +......+....+....++|||||++.+ ....++.|+..++.- .. -.+.
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka----------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~ 712 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA----------HPDVFNILLQVLDDGRLTDGQGRTVDFRNT 712 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC----------CHHHHHHHHHHHhhCceecCCceEEeeccc
Confidence 111 0111111222333444489999999988 245677777777532 11 1245
Q ss_pred EEEeecCCCC-------------------------CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc
Q 003696 494 ILMAATNLPD-------------------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 539 (802)
Q Consensus 494 IVIaATN~pe-------------------------~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~ 539 (802)
++|+|||... .+.|+|+. |+|.++.+.+++.+....|++.++.+
T Consensus 713 iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 713 VVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred EEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 7888998731 23456665 89999999999999999999888754
No 164
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.26 E-value=3.7e-11 Score=139.59 Aligned_cols=209 Identities=25% Similarity=0.303 Sum_probs=128.2
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHh---cCCCeeEeeccchhhhh
Q 003696 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGSEFEEMF 431 (802)
Q Consensus 355 ~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~e---ag~pfi~is~se~~e~~ 431 (802)
.+|++++|.+++.+.+.+.+..+.. .+..|||+|++||||+++|+++... .+.||+.++|..+.+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYAR----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 5799999999998888887764432 2347999999999999999999865 46799999998775421
Q ss_pred h-----hhh------H--HHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc---------c
Q 003696 432 V-----GVG------A--RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------Q 489 (802)
Q Consensus 432 v-----G~~------~--k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~---------~ 489 (802)
. |.. + ..-..+|+.|. ...|||||||.|. ...+..|+..++.-. .
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp----------~~~Q~~Ll~~L~~~~~~r~g~~~~~ 345 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMP----------LPLQTRLLRVLEEREVVRVGGTEPV 345 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCC----------HHHHHHHHHHHhcCcEEecCCCcee
Confidence 1 100 0 01123444443 2489999999993 455666666664311 1
Q ss_pred CCCEEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhccCCC--CCccc---HHH---
Q 003696 490 NEGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDKPL--ADDVD---VKA--- 550 (802)
Q Consensus 490 ~~~VIVIaATN~pe~LD~ALlRpGRFdr-------~I~v~lPd~eeR~~----ILk~~l~~~~l--~~dvd---l~~--- 550 (802)
..++.+|++||.+ +...+ ..|+|.. .+.+..|..++|.+ ++.+++.+... ...++ +..
T Consensus 346 ~~dvRiIaat~~~--l~~~v-~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~ 422 (526)
T TIGR02329 346 PVDVRVVAATHCA--LTTAV-QQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAG 422 (526)
T ss_pred eecceEEeccCCC--HHHHh-hhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHH
Confidence 1235788888853 22221 2233332 45667777777754 55555543211 01122 222
Q ss_pred ----HHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 003696 551 ----IARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEF 589 (802)
Q Consensus 551 ----LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~ 589 (802)
|.+..=-.+.++|++++++++..+.......|+.+++..
T Consensus 423 ~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 423 VADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 333332236788888888887765332345788877643
No 165
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.25 E-value=1.5e-10 Score=136.87 Aligned_cols=101 Identities=24% Similarity=0.286 Sum_probs=67.0
Q ss_pred CEEEEeecCCC--CCCChhhcCCCccc---eEEEcc--CC-CHHHHHHHHHHHh---ccCCCCCccc---HHHHHh---c
Q 003696 492 GIILMAATNLP--DILDPALTRPGRFD---RHIVVP--NP-DVRGRQEILELYL---QDKPLADDVD---VKAIAR---G 554 (802)
Q Consensus 492 ~VIVIaATN~p--e~LD~ALlRpGRFd---r~I~v~--lP-d~eeR~~ILk~~l---~~~~l~~dvd---l~~LA~---~ 554 (802)
++.+|+++|.. ..+|+.++. ||+ ..+.++ .| +.+.|.++.+... ++....+.++ +..|.+ +
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 57899999974 578999988 998 556554 34 4555555544433 2221122233 333331 1
Q ss_pred CC------CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003696 555 TP------GFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 594 (802)
Q Consensus 555 t~------G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~ri 594 (802)
.. ..+.++|.++++.|...|..++...|+.+|+++|++..
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 11 24579999999999888888888899999999998754
No 166
>PHA02244 ATPase-like protein
Probab=99.24 E-value=2.5e-10 Score=126.35 Aligned_cols=119 Identities=25% Similarity=0.351 Sum_probs=79.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhh--hh---hhHHHHHHHHHHHHhcCCcEEEEcchhhhcccc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF--VG---VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 466 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~--vG---~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r 466 (802)
.+|||+||||||||++|+++|..++.||+.++.. .+.+ .| ....-...-|-.|. ..+.+|||||++.+.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~--- 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASI--- 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCC---
Confidence 3699999999999999999999999999998742 1111 11 10010111222222 234799999999883
Q ss_pred ccCCcchHHHHHHHHHHhcc---------cccCCCEEEEeecCCC-----------CCCChhhcCCCccceEEEccCCCH
Q 003696 467 KQWEGHTKKTLHQLLVEMDG---------FEQNEGIILMAATNLP-----------DILDPALTRPGRFDRHIVVPNPDV 526 (802)
Q Consensus 467 ~~~~~~~~~tLnqLL~eLDg---------~~~~~~VIVIaATN~p-----------e~LD~ALlRpGRFdr~I~v~lPd~ 526 (802)
..++..|...++. +....++.+|+|+|.+ ..|+++++. || ..|+++.|+.
T Consensus 194 -------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~ 263 (383)
T PHA02244 194 -------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDEK 263 (383)
T ss_pred -------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCcH
Confidence 2333444444431 1234578999999973 577899988 99 5799999983
No 167
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.24 E-value=1.7e-10 Score=141.42 Aligned_cols=200 Identities=21% Similarity=0.288 Sum_probs=129.4
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhh--
Q 003696 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF-- 431 (802)
Q Consensus 357 FdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~-- 431 (802)
-+.|+|++++.+.+.+.+...+..-. ...++...+||+||||||||++|+++|..+ +.+++.++++++.+..
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 35699999999999888775321100 011233468999999999999999999976 5689999998875432
Q ss_pred ---hhh-----hHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc--c-------CCCEE
Q 003696 432 ---VGV-----GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--Q-------NEGII 494 (802)
Q Consensus 432 ---vG~-----~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~--~-------~~~VI 494 (802)
.|. +......+....+....+|||||||+.+ ....++.||..|+.-. . -.+.+
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka----------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~i 710 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA----------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTV 710 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC----------CHHHHHHHHHHHhcCceecCCCeEEecCCcE
Confidence 111 0111123334445555679999999988 3567777777775321 1 13478
Q ss_pred EEeecCCCCC-------------------------CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccC-------CC
Q 003696 495 LMAATNLPDI-------------------------LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-------PL 542 (802)
Q Consensus 495 VIaATN~pe~-------------------------LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~-------~l 542 (802)
||+|||.... +.|.|.. |+|.++.+.+++.+...+|+...+... .+
T Consensus 711 iI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~ 788 (852)
T TIGR03346 711 IIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKI 788 (852)
T ss_pred EEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 8899997321 2244444 999999999999999999988877431 11
Q ss_pred C---CcccHHHHHhcC--CCCCHHHHHHHHHHHH
Q 003696 543 A---DDVDVKAIARGT--PGFNGADLANLVNIAA 571 (802)
Q Consensus 543 ~---~dvdl~~LA~~t--~G~SgaDL~nLvn~Aa 571 (802)
. ++..+..|++.. +.+..+.|+++++...
T Consensus 789 ~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 789 TLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred eecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 1 122244555542 2355666776666543
No 168
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.24 E-value=3e-11 Score=132.07 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=97.9
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhh--hhhhhHHH----------HHHHHHHHHhcCCcEEEEcc
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM--FVGVGARR----------VRSLFQAAKKKAPCIIFIDE 458 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~--~vG~~~k~----------vr~lF~~Ar~~aP~ILfIDE 458 (802)
.++|||.||||||||++++.+|.+++.|++.+++...... ++|...-. ....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 3579999999999999999999999999999988766544 34432110 1122333433 457899999
Q ss_pred hhhhccccccCCcchHHHHHHHHHH-----hcc----cccCCCEEEEeecCCCC------------CCChhhcCCCccce
Q 003696 459 IDAVGSTRKQWEGHTKKTLHQLLVE-----MDG----FEQNEGIILMAATNLPD------------ILDPALTRPGRFDR 517 (802)
Q Consensus 459 IDaLg~~r~~~~~~~~~tLnqLL~e-----LDg----~~~~~~VIVIaATN~pe------------~LD~ALlRpGRFdr 517 (802)
||..-. .....++.+|.. +.+ +.....+.||||+|..+ .|+.|++. ||-.
T Consensus 143 in~a~p-------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i 213 (327)
T TIGR01650 143 YDAGRP-------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSI 213 (327)
T ss_pred hhccCH-------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heee
Confidence 998832 234445555542 111 12344688999999754 46788887 9988
Q ss_pred EEEccCCCHHHHHHHHHHHhc
Q 003696 518 HIVVPNPDVRGRQEILELYLQ 538 (802)
Q Consensus 518 ~I~v~lPd~eeR~~ILk~~l~ 538 (802)
.+.++.|+.+.-.+|+.....
T Consensus 214 ~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 214 VTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred EeeCCCCCHHHHHHHHHhhcc
Confidence 889999999999999987654
No 169
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.23 E-value=1.7e-10 Score=134.00 Aligned_cols=219 Identities=18% Similarity=0.189 Sum_probs=133.8
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcC--CCCCceEEEEccCCCcHHHHHHHHHHhcCCC-eeEe---eccchhhhhh
Q 003696 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLG--GKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-FFYR---AGSEFEEMFV 432 (802)
Q Consensus 359 DViG~deaK~eL~eiV~~Lk~p~~~~~lG--~~~PkgVLL~GPPGTGKT~LArALA~eag~p-fi~i---s~se~~e~~v 432 (802)
+|.|++.+|..+.-.+ +....+...-| .+-..+|||+|+||||||++||+++...... |... ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l--~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLL--FGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHH--hCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 4789998877664332 22111100111 1223479999999999999999999976533 3221 2211211000
Q ss_pred hh---hHHHH-HHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc-----------cCCCEEEEe
Q 003696 433 GV---GARRV-RSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-----------QNEGIILMA 497 (802)
Q Consensus 433 G~---~~k~v-r~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~-----------~~~~VIVIa 497 (802)
.. +...+ ...+..| ...+++|||+|.+. ...+..|+..|+.-. -+.++.|||
T Consensus 282 ~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~----------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viA 348 (509)
T smart00350 282 RDPETREFTLEGGALVLA---DNGVCCIDEFDKMD----------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLA 348 (509)
T ss_pred EccCcceEEecCccEEec---CCCEEEEechhhCC----------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEE
Confidence 00 00000 0011111 23599999999993 345666666665311 124678999
Q ss_pred ecCCCC-------------CCChhhcCCCccceEEEc-cCCCHHHHHHHHHHHhccCC---------C------------
Q 003696 498 ATNLPD-------------ILDPALTRPGRFDRHIVV-PNPDVRGRQEILELYLQDKP---------L------------ 542 (802)
Q Consensus 498 ATN~pe-------------~LD~ALlRpGRFdr~I~v-~lPd~eeR~~ILk~~l~~~~---------l------------ 542 (802)
|+|..+ .|++++++ |||..+.+ +.|+.+...+|.++.+.... .
T Consensus 349 a~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~y 426 (509)
T smart00350 349 AANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKY 426 (509)
T ss_pred EeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHH
Confidence 999753 58999998 99986554 78999999998888543210 0
Q ss_pred --------C---CcccHHHHH------hc---------CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003696 543 --------A---DDVDVKAIA------RG---------TPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 594 (802)
Q Consensus 543 --------~---~dvdl~~LA------~~---------t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~ri 594 (802)
. .+...+.|. +. ..+.|++.+..+++.|..+|..+.++.|+.+|++.|+.-+
T Consensus 427 i~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 427 IAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 0 000011111 11 2356899999999999999999999999999999998743
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.23 E-value=9.7e-11 Score=107.40 Aligned_cols=125 Identities=34% Similarity=0.493 Sum_probs=83.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhcCCC---eeEeeccchhhhh--------------hhhhHHHHHHHHHHHHhcCCcE
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEAGVP---FFYRAGSEFEEMF--------------VGVGARRVRSLFQAAKKKAPCI 453 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~eag~p---fi~is~se~~e~~--------------vG~~~k~vr~lF~~Ar~~aP~I 453 (802)
+..++|+||||||||++++++|..+..+ +++++++...... ........+.++..++...|.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3579999999999999999999999775 8888877654321 1234566778888888877899
Q ss_pred EEEcchhhhccccccCCcchHHHHHHH---HHHhcccccCCCEEEEeecCC-CCCCChhhcCCCccceEEEccCC
Q 003696 454 IFIDEIDAVGSTRKQWEGHTKKTLHQL---LVEMDGFEQNEGIILMAATNL-PDILDPALTRPGRFDRHIVVPNP 524 (802)
Q Consensus 454 LfIDEIDaLg~~r~~~~~~~~~tLnqL---L~eLDg~~~~~~VIVIaATN~-pe~LD~ALlRpGRFdr~I~v~lP 524 (802)
|||||++.+..... ...... ...........+..+|+++|. ....+..+.+ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQ-------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHH-------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 99999999955311 110000 000111123456788888886 3344444444 88888887655
No 171
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.22 E-value=4.4e-11 Score=139.37 Aligned_cols=206 Identities=23% Similarity=0.291 Sum_probs=126.8
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhh
Q 003696 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM 430 (802)
Q Consensus 354 ~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~ 430 (802)
..+|++++|.+.+.+++.+.+..+.. ....|||+|++|||||++|++|.... +.||+.++|..+.+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 35799999999998888887765432 23469999999999999999998864 679999999887443
Q ss_pred hh-----hhhH-------HHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccc--cc-------
Q 003696 431 FV-----GVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--EQ------- 489 (802)
Q Consensus 431 ~v-----G~~~-------k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~--~~------- 489 (802)
.. |... ......|..+ ...+|||||||.+. ...+..|+..++.- ..
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~----------~~~Q~~Ll~~l~~~~~~~~~~~~~~ 328 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS----------PAFQAKLLRVLQEGEFERVGGNRTL 328 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC----------HHHHHHHHHHHhcCcEEECCCCceE
Confidence 21 1000 0000112222 24599999999993 34566677666431 11
Q ss_pred CCCEEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHHHH----HHHHHHHhccC----CCCCccc---HHHH
Q 003696 490 NEGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGR----QEILELYLQDK----PLADDVD---VKAI 551 (802)
Q Consensus 490 ~~~VIVIaATN~pe~LD~ALlRpGRFdr-------~I~v~lPd~eeR----~~ILk~~l~~~----~l~~dvd---l~~L 551 (802)
..++.+|++|+.. +...+ ..|+|.. .+.+..|..++| ..|+++++.+. .....++ +..|
T Consensus 329 ~~~~riI~~s~~~--l~~~~-~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 405 (534)
T TIGR01817 329 KVDVRLVAATNRD--LEEAV-AKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVL 405 (534)
T ss_pred eecEEEEEeCCCC--HHHHH-HcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 1247888888743 22222 2344422 344555655555 34566665432 1111222 4555
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003696 552 ARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 588 (802)
Q Consensus 552 A~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle 588 (802)
....--.+.++|+++++.|+..+ ....|+.+|+.
T Consensus 406 ~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 406 MSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 55543346788888888877554 45678888874
No 172
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.21 E-value=1.9e-09 Score=113.87 Aligned_cols=188 Identities=19% Similarity=0.243 Sum_probs=117.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCC-Cee--Eeec-----cchhhh---hhhhh------H---HHHHHHH-HHHHhcCC
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGV-PFF--YRAG-----SEFEEM---FVGVG------A---RRVRSLF-QAAKKKAP 451 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~-pfi--~is~-----se~~e~---~vG~~------~---k~vr~lF-~~Ar~~aP 451 (802)
.++|+||+|+|||++++.+++++.. .+. .+.. .++... ..|.. . ..+.+.+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 5889999999999999999998752 222 1111 111111 11111 0 1122222 22335667
Q ss_pred cEEEEcchhhhccccccCCcchHHHHHHHHHHhccccc-C-CCE--EEEeecCCCCCCC----hhhcCCCccceEEEccC
Q 003696 452 CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ-N-EGI--ILMAATNLPDILD----PALTRPGRFDRHIVVPN 523 (802)
Q Consensus 452 ~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~-~-~~V--IVIaATN~pe~LD----~ALlRpGRFdr~I~v~l 523 (802)
.+|+|||+|.+.. ..+..+ ..+-.+.. + ..+ ++++.++..+.+. ..+.+ |+...+++++
T Consensus 125 ~vliiDe~~~l~~----------~~~~~l-~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l~~ 191 (269)
T TIGR03015 125 ALLVVDEAQNLTP----------ELLEEL-RMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHLGP 191 (269)
T ss_pred eEEEEECcccCCH----------HHHHHH-HHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeCCC
Confidence 8999999999832 222222 22222211 1 222 2233222222221 12333 7777899999
Q ss_pred CCHHHHHHHHHHHhccCCC-----CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003696 524 PDVRGRQEILELYLQDKPL-----ADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 594 (802)
Q Consensus 524 Pd~eeR~~ILk~~l~~~~l-----~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~ri 594 (802)
.+.++..+++.+.+..... -.+..++.|.+.+.|. ++.|..+++.+...|..++.+.|+.++++.++..+
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 9999999999988864332 1334578889999886 56699999999999999999999999999998764
No 173
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.19 E-value=1.8e-10 Score=140.71 Aligned_cols=131 Identities=25% Similarity=0.344 Sum_probs=90.0
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCc-eEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhh---
Q 003696 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPK-GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM--- 430 (802)
Q Consensus 358 dDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~Pk-gVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~--- 430 (802)
+.|+|++++++.+...+...+..-. ....|. .+||+||+|||||++|+++|..+ +.+++.++++++.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 5689999999999887764321100 112243 47999999999999999999987 468999998887542
Q ss_pred --hhhh-----hHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc---------cCCCEE
Q 003696 431 --FVGV-----GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGII 494 (802)
Q Consensus 431 --~vG~-----~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~---------~~~~VI 494 (802)
+.|. +......+....+.+..+||+|||+|.+ ....++.|+..||.-. .-.+.+
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka----------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i 654 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA----------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTL 654 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC----------CHHHHHHHHHHhccCceecCCCcEEecCceE
Confidence 1111 1111234555556665689999999988 3567788888877421 124588
Q ss_pred EEeecCCC
Q 003696 495 LMAATNLP 502 (802)
Q Consensus 495 VIaATN~p 502 (802)
+|.|||..
T Consensus 655 ~I~Tsn~g 662 (821)
T CHL00095 655 IIMTSNLG 662 (821)
T ss_pred EEEeCCcc
Confidence 99999964
No 174
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=1.6e-10 Score=127.20 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=111.0
Q ss_pred CcccccC-CHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC----------------
Q 003696 356 TFKDVKG-CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---------------- 418 (802)
Q Consensus 356 tFdDViG-~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p---------------- 418 (802)
.|++|+| ++.+++.|+..+. .+++|+.+||+||+|+|||++|+++|+.+.++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~-----------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA-----------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5889999 8889998888775 46789899999999999999999999986432
Q ss_pred --------eeEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcc
Q 003696 419 --------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG 486 (802)
Q Consensus 419 --------fi~is~se~~e~~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg 486 (802)
+.++... . ...+...++++.+.+.. ....|++|||+|.+ .....|.||..|+.
T Consensus 72 ~~~~~hpD~~~i~~~---~--~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~----------~~~a~NaLLK~LEE 136 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---G--QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM----------TASAANSLLKFLEE 136 (329)
T ss_pred HhcCCCCCEEEeccc---c--ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh----------CHHHHHHHHHHhcC
Confidence 1111110 0 01123456666655432 23459999999999 35788999999995
Q ss_pred cccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHH
Q 003696 487 FEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILEL 535 (802)
Q Consensus 487 ~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~ 535 (802)
+..++++|.+|+.+..|.+++++ |+ ..+++++|+.++..++|+.
T Consensus 137 --Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 --PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred --CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 44566677788888899999987 76 6889999999988777764
No 175
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.19 E-value=1.6e-10 Score=134.17 Aligned_cols=194 Identities=24% Similarity=0.295 Sum_probs=121.8
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhh
Q 003696 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV 432 (802)
Q Consensus 356 tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~v 432 (802)
++++++|.+...+.+.+.+..+.. .+..|||+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 688999999998888888775433 24479999999999999999998864 67999999988754211
Q ss_pred -----hhhH-------HHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc---------cCC
Q 003696 433 -----GVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNE 491 (802)
Q Consensus 433 -----G~~~-------k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~---------~~~ 491 (802)
|... ......|+.|. ...|||||||.|. ...+..|+..++.-. ...
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 321 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELP----------LALQAKLLRVLQYGEIQRVGSDRSLRV 321 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCC----------HHHHHHHHHHHhcCCEeeCCCCcceec
Confidence 1100 00112343332 3589999999993 455666666664311 113
Q ss_pred CEEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhccC----C-CCCccc---HHHHH
Q 003696 492 GIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----P-LADDVD---VKAIA 552 (802)
Q Consensus 492 ~VIVIaATN~pe~LD~ALlRpGRFdr-------~I~v~lPd~eeR~~----ILk~~l~~~----~-l~~dvd---l~~LA 552 (802)
++-+|++||.. +...+ ..|+|.. .+.|..|..++|.+ ++++++++. . -...++ +..|.
T Consensus 322 ~~RiI~~t~~~--l~~~~-~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~ 398 (509)
T PRK05022 322 DVRVIAATNRD--LREEV-RAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALL 398 (509)
T ss_pred ceEEEEecCCC--HHHHH-HcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 57888998853 22222 1233321 45677788777754 444444321 1 111233 44444
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHH
Q 003696 553 RGTPGFNGADLANLVNIAAIKAA 575 (802)
Q Consensus 553 ~~t~G~SgaDL~nLvn~Aa~~Aa 575 (802)
+..=-.+.++|++++++|+..+.
T Consensus 399 ~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 399 AYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred hCCCCCcHHHHHHHHHHHHHhcC
Confidence 44433477899999998887663
No 176
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.18 E-value=1.1e-10 Score=131.34 Aligned_cols=198 Identities=22% Similarity=0.284 Sum_probs=132.2
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhh
Q 003696 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM 430 (802)
Q Consensus 354 ~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~ 430 (802)
...+.+|||...+..++.+.|+.....+. .|||.|.+||||..+||+|.... +.||+++||..+-+.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd~----------tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSDS----------TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCCC----------eEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 56789999999999999999987655443 79999999999999999998754 689999999887554
Q ss_pred hhh-hhHHHHHHHHHHHHhc--------CCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcc-----cccC----CC
Q 003696 431 FVG-VGARRVRSLFQAAKKK--------APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-----FEQN----EG 492 (802)
Q Consensus 431 ~vG-~~~k~vr~lF~~Ar~~--------aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg-----~~~~----~~ 492 (802)
... +-....+..|.-|... ...-||+|||..|. -..+..||..+.. ...+ -.
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelP----------L~lQaKLLRvLQegEieRvG~~r~ikVD 358 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELP----------LALQAKLLRVLQEGEIERVGGDRTIKVD 358 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCCeEechhhccCC----------HHHHHHHHHHHhhcceeecCCCceeEEE
Confidence 211 1111233344433221 12489999999883 3445556655432 2222 24
Q ss_pred EEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhcc----CCC-C---CcccHHHHHh
Q 003696 493 IILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQD----KPL-A---DDVDVKAIAR 553 (802)
Q Consensus 493 VIVIaATN~pe~LD~ALlRpGRFdr-------~I~v~lPd~eeR~~----ILk~~l~~----~~l-~---~dvdl~~LA~ 553 (802)
|-|||||| .+|..+... |+|.. ++.+..|..++|.+ +.++++++ ... . +...++.+..
T Consensus 359 VRiIAATN--RDL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~ 435 (550)
T COG3604 359 VRVIAATN--RDLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS 435 (550)
T ss_pred EEEEeccc--hhHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence 89999999 466666554 66643 66677788888854 33333332 222 1 1222455555
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 003696 554 GTPGFNGADLANLVNIAAIKA 574 (802)
Q Consensus 554 ~t~G~SgaDL~nLvn~Aa~~A 574 (802)
..--.+.++|+|++++|+..|
T Consensus 436 y~wPGNVRELen~veRavlla 456 (550)
T COG3604 436 YEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCCCcHHHHHHHHHHHHHHh
Confidence 543347899999999999987
No 177
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=3.8e-10 Score=124.24 Aligned_cols=149 Identities=21% Similarity=0.339 Sum_probs=106.3
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHhcCCC------------------------eeEeeccchhhhhhhhhHHHHHHHH
Q 003696 388 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------------------FFYRAGSEFEEMFVGVGARRVRSLF 443 (802)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArALA~eag~p------------------------fi~is~se~~e~~vG~~~k~vr~lF 443 (802)
++.|+++||+||+|+|||++|+++|+.+.+. ++.+...+- . ...+.+.+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHH
Confidence 6789999999999999999999999987542 111211000 0 012345677766
Q ss_pred HHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEE
Q 003696 444 QAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHI 519 (802)
Q Consensus 444 ~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I 519 (802)
+.+.. ....|++||++|.| .....|.||..|+. +..++++|.+|+.++.|.+.+++ |+ ..+
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m----------~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc-~~~ 160 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAM----------NRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RC-QQQ 160 (328)
T ss_pred HHHhhccccCCCeEEEECChhhC----------CHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hc-eee
Confidence 55543 34569999999999 46789999999995 45677888899999999999987 88 468
Q ss_pred EccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCC
Q 003696 520 VVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPG 557 (802)
Q Consensus 520 ~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G 557 (802)
.|++|+.++..+.|+..... ..+.+...+++...|
T Consensus 161 ~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G 195 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG 195 (328)
T ss_pred eCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC
Confidence 99999999988888765421 123334455555555
No 178
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.17 E-value=3.5e-10 Score=134.59 Aligned_cols=208 Identities=20% Similarity=0.270 Sum_probs=127.4
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhh-
Q 003696 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM- 430 (802)
Q Consensus 355 ~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~- 430 (802)
.+|++++|.+.+.+++.+.+..+.. .+..|||+|++||||+++|+++.... +.||+.++|..+...
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 4699999999987777776654322 23369999999999999999998764 579999999877432
Q ss_pred ----hhhhh--H--HHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc--c-------CCCE
Q 003696 431 ----FVGVG--A--RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--Q-------NEGI 493 (802)
Q Consensus 431 ----~vG~~--~--k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~--~-------~~~V 493 (802)
+.|.. . ......|+.| ...+||||||+.|. ...+..|+..++.-. . ..++
T Consensus 392 ~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~ 458 (638)
T PRK11388 392 LAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS----------PELQSALLQVLKTGVITRLDSRRLIPVDV 458 (638)
T ss_pred HHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCC----------HHHHHHHHHHHhcCcEEeCCCCceEEeeE
Confidence 11210 0 0000122222 24699999999993 345566666664311 0 1247
Q ss_pred EEEeecCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhccC----CCC---CcccHHHHHhcC
Q 003696 494 ILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----PLA---DDVDVKAIARGT 555 (802)
Q Consensus 494 IVIaATN~pe~LD~ALlRpGRFdr-------~I~v~lPd~eeR~~----ILk~~l~~~----~l~---~dvdl~~LA~~t 555 (802)
.+|+||+.. +.. +...|+|.. .+.+..|..++|.+ ++++++.+. ... .+..+..|.+..
T Consensus 459 riI~~t~~~--l~~-~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~ 535 (638)
T PRK11388 459 RVIATTTAD--LAM-LVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYR 535 (638)
T ss_pred EEEEeccCC--HHH-HHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCC
Confidence 789998853 222 222244422 56677788877753 455554322 111 222345555554
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003696 556 PGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAK 591 (802)
Q Consensus 556 ~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~ 591 (802)
=-.+.++|+++++.|...+ ....|+.+|+...+
T Consensus 536 WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 536 WPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred CCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 2346788888888776543 44578888875443
No 179
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=4.6e-10 Score=132.54 Aligned_cols=259 Identities=11% Similarity=0.100 Sum_probs=146.2
Q ss_pred ccccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeE-eec
Q 003696 346 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY-RAG 424 (802)
Q Consensus 346 ~~~~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~-is~ 424 (802)
..|.....+.+++||+|+++..++|+.++..... +....+.++|+||||||||++++.+|++++..++. .+.
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~np 144 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNP 144 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhh
Confidence 4566778888999999999998888777654322 22223459999999999999999999998866543 111
Q ss_pred c---chh----------hhh--hhhhHHHHHHHHHHHHh----------cCCcEEEEcchhhhccccccCCcchHHHHHH
Q 003696 425 S---EFE----------EMF--VGVGARRVRSLFQAAKK----------KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQ 479 (802)
Q Consensus 425 s---e~~----------e~~--vG~~~k~vr~lF~~Ar~----------~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnq 479 (802)
. ... ..+ .....+.++.++..+.. ....|||||||+.+... ....+..
T Consensus 145 v~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-------~~~~lq~ 217 (637)
T TIGR00602 145 TLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-------DTRALHE 217 (637)
T ss_pred hhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-------hHHHHHH
Confidence 1 000 000 01123344455555442 24569999999988532 2335555
Q ss_pred HHH-HhcccccCCCEEEEeecC-CCC--------------CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCC-
Q 003696 480 LLV-EMDGFEQNEGIILMAATN-LPD--------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPL- 542 (802)
Q Consensus 480 LL~-eLDg~~~~~~VIVIaATN-~pe--------------~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l- 542 (802)
+|. ... ....+.+|++++ .+. .|.++++...|+ .+|.|++.......+.|+..+.....
T Consensus 218 lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~ 293 (637)
T TIGR00602 218 ILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKK 293 (637)
T ss_pred HHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhc
Confidence 555 221 123333333333 221 133666642244 47899999999988888877765321
Q ss_pred -C------CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-------hCCCccCHHHHHHHHHHHhccccc-cc--ccc
Q 003696 543 -A------DDVDVKAIARGTPGFNGADLANLVNIAAIKAAV-------DGGEKLTATELEFAKDRILMGTER-KT--MFI 605 (802)
Q Consensus 543 -~------~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~-------~~~~~It~edle~A~~ril~g~~~-k~--~~l 605 (802)
. .+..+..|+. .+.+|++.+++.....+.. .+...++..++..+..+...-... +. ..+
T Consensus 294 ~~~~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~~~l~~~ 369 (637)
T TIGR00602 294 NGEKIKVPKKTSVELLCQ----GCSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNENQEIQAL 369 (637)
T ss_pred cccccccCCHHHHHHHHH----hCCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhHHHHHhh
Confidence 1 1234666666 3556898888866554332 223345665555544332110000 00 001
Q ss_pred hHHHHHhHHHhhhhhHHHHHh
Q 003696 606 SEESKKLTAYHESGHAIVAFN 626 (802)
Q Consensus 606 s~~~~~~vA~HEaGHAlva~~ 626 (802)
...+.-+..+|-.|..|....
T Consensus 370 ~~rd~sl~lfhalgkily~Kr 390 (637)
T TIGR00602 370 GGKDVSLFLFRALGKILYCKR 390 (637)
T ss_pred ccccchhHHHHHhChhhcccc
Confidence 222334567777777666543
No 180
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.17 E-value=4e-11 Score=123.29 Aligned_cols=119 Identities=29% Similarity=0.433 Sum_probs=68.9
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcC-------------------
Q 003696 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG------------------- 416 (802)
Q Consensus 356 tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag------------------- 416 (802)
.|+||+|++.+|..|.-... | .+++||+||||||||++|+++..-+-
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 48999999999999977665 3 36999999999999999999998431
Q ss_pred ---------CCeeEeeccchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccc
Q 003696 417 ---------VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF 487 (802)
Q Consensus 417 ---------~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~ 487 (802)
.||.....+.-....+|.+....-..+..|.. .|||+||+-.+ ...++..|+.-|+.-
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef----------~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEF----------DRSVLDALRQPLEDG 133 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS-----------HHHHHHHHHHHHHS
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhc----------CHHHHHHHHHHHHCC
Confidence 12222211111111122211000011112222 49999999877 467888888877642
Q ss_pred -----------ccCCCEEEEeecCC
Q 003696 488 -----------EQNEGIILMAATNL 501 (802)
Q Consensus 488 -----------~~~~~VIVIaATN~ 501 (802)
.-..++++|+|+|.
T Consensus 134 ~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 134 EVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp BEEEEETTEEEEEB--EEEEEEE-S
T ss_pred eEEEEECCceEEEecccEEEEEecc
Confidence 12235889999884
No 181
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.17 E-value=3.2e-10 Score=124.88 Aligned_cols=198 Identities=24% Similarity=0.271 Sum_probs=116.5
Q ss_pred ccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhh----
Q 003696 360 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV---- 432 (802)
Q Consensus 360 ViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~v---- 432 (802)
++|.+.+.+.+.+.+..+.. ....|||+|++||||+++|++|.... +.||+.++|..+.+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 46778877777776664432 23469999999999999999997654 57999999987643211
Q ss_pred -hhh-------HHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc---------cCCCEEE
Q 003696 433 -GVG-------ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGIIL 495 (802)
Q Consensus 433 -G~~-------~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~---------~~~~VIV 495 (802)
|.. ......+|+.|. ..+|||||||.|. ...+..|+..++.-. ...++.+
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 137 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATAS----------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRL 137 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhCC----------HHHHHHHHHHHHcCcEEecCCCceeccceEE
Confidence 100 000112243332 4599999999993 455666666664311 1245788
Q ss_pred EeecCCCC-------CCChhhcCCCccceEEEccCCCHHHHHH----HHHHHhcc----CCCC--Cccc---HHHHHhcC
Q 003696 496 MAATNLPD-------ILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQD----KPLA--DDVD---VKAIARGT 555 (802)
Q Consensus 496 IaATN~pe-------~LD~ALlRpGRFdr~I~v~lPd~eeR~~----ILk~~l~~----~~l~--~dvd---l~~LA~~t 555 (802)
|++||..- .+.+.|.. ||. .+.|..|..++|.+ ++++++.+ .... ..++ +..|....
T Consensus 138 I~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~ 214 (329)
T TIGR02974 138 VCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYH 214 (329)
T ss_pred EEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCC
Confidence 99988531 22233332 332 45677777777754 44454432 1111 1233 44444444
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 003696 556 PGFNGADLANLVNIAAIKAAVDGGEKLTATE 586 (802)
Q Consensus 556 ~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~ed 586 (802)
=-.+.++|++++++++..+ ....++.++
T Consensus 215 WPGNvrEL~n~i~~~~~~~---~~~~~~~~~ 242 (329)
T TIGR02974 215 WPGNVRELKNVVERSVYRH---GLEEAPIDE 242 (329)
T ss_pred CCchHHHHHHHHHHHHHhC---CCCccchhh
Confidence 2236677888887766554 233455554
No 182
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.16 E-value=3.3e-10 Score=124.59 Aligned_cols=192 Identities=24% Similarity=0.275 Sum_probs=115.8
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhh-
Q 003696 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF- 431 (802)
Q Consensus 356 tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~- 431 (802)
-|++++|.+...+.+.+.+..+.. .+..|||+|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 478899999998888887765432 23469999999999999999997654 5799999999874321
Q ss_pred ----hhhhH-------HHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccc--cc-------CC
Q 003696 432 ----VGVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--EQ-------NE 491 (802)
Q Consensus 432 ----vG~~~-------k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~--~~-------~~ 491 (802)
.|... ......|..+. ...|||||||.+. ...+..|+..++.- .. +.
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~----------~~~Q~~L~~~l~~~~~~~~g~~~~~~~ 140 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAP----------MLVQEKLLRVIEYGELERVGGSQPLQV 140 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCC----------HHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 11100 00112333332 3589999999993 34556666666431 11 12
Q ss_pred CEEEEeecCCC-------CCCChhhcCCCccceEEEccCCCHHHHHH----HHHHHhcc----CCCC--Cccc---HHHH
Q 003696 492 GIILMAATNLP-------DILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQD----KPLA--DDVD---VKAI 551 (802)
Q Consensus 492 ~VIVIaATN~p-------e~LD~ALlRpGRFdr~I~v~lPd~eeR~~----ILk~~l~~----~~l~--~dvd---l~~L 551 (802)
++.||++|+.. ..+.+.|.. ||. .+.|..|..++|.+ ++++++.+ .... ..++ +..+
T Consensus 141 ~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L 217 (326)
T PRK11608 141 NVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETL 217 (326)
T ss_pred cEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 47888888753 233344443 442 34566677777644 55555432 1111 1233 3344
Q ss_pred HhcCCCCCHHHHHHHHHHHHHH
Q 003696 552 ARGTPGFNGADLANLVNIAAIK 573 (802)
Q Consensus 552 A~~t~G~SgaDL~nLvn~Aa~~ 573 (802)
.+..=-.+.++|++++++|...
T Consensus 218 ~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 218 LNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HhCCCCcHHHHHHHHHHHHHHh
Confidence 4433223567777888777654
No 183
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.15 E-value=6.8e-10 Score=130.92 Aligned_cols=191 Identities=21% Similarity=0.259 Sum_probs=128.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcC--CCeeEeeccchhhhhhhhhHHHHHHHHHHH---------HhcCCcEEEEcchh
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEFEEMFVGVGARRVRSLFQAA---------KKKAPCIIFIDEID 460 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag--~pfi~is~se~~e~~vG~~~k~vr~lF~~A---------r~~aP~ILfIDEID 460 (802)
.+|||.|+||||||++|++++..++ .||+.+......+...|.. .+...+... ......+||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 3899999999999999999999775 4788887543333333321 111101000 00112499999999
Q ss_pred hhccccccCCcchHHHHHHHHHHhcccc-----------cCCCEEEEeecCCCC---CCChhhcCCCccceEEEcc-CCC
Q 003696 461 AVGSTRKQWEGHTKKTLHQLLVEMDGFE-----------QNEGIILMAATNLPD---ILDPALTRPGRFDRHIVVP-NPD 525 (802)
Q Consensus 461 aLg~~r~~~~~~~~~tLnqLL~eLDg~~-----------~~~~VIVIaATN~pe---~LD~ALlRpGRFdr~I~v~-lPd 525 (802)
.+. ..+++.|+..|+.-. ....+.||+++|..+ .|.++|.. ||+.++.+. .|+
T Consensus 95 rl~----------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~ 162 (589)
T TIGR02031 95 LLD----------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVAS 162 (589)
T ss_pred hCC----------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCC
Confidence 993 567778888776321 124588999999765 78899998 999988776 567
Q ss_pred HHHHHHHHHHHhccC-------------------------CCCCcccHHHHHhcC--CCCC-HHHHHHHHHHHHHHHHHh
Q 003696 526 VRGRQEILELYLQDK-------------------------PLADDVDVKAIARGT--PGFN-GADLANLVNIAAIKAAVD 577 (802)
Q Consensus 526 ~eeR~~ILk~~l~~~-------------------------~l~~dvdl~~LA~~t--~G~S-gaDL~nLvn~Aa~~Aa~~ 577 (802)
.++|.+|++.++... .+ ++..+..|+..+ -|.+ .+.-..+++.|...|+.+
T Consensus 163 ~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i-~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~ 241 (589)
T TIGR02031 163 QDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTI-SAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALH 241 (589)
T ss_pred HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccC-CHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHh
Confidence 888999998765211 11 111122222221 2333 455667888899999999
Q ss_pred CCCccCHHHHHHHHHHHhcc
Q 003696 578 GGEKLTATELEFAKDRILMG 597 (802)
Q Consensus 578 ~~~~It~edle~A~~ril~g 597 (802)
+++.|+.+|+..|..-++..
T Consensus 242 gr~~V~~~Dv~~a~~lvl~h 261 (589)
T TIGR02031 242 GRTEVTEEDLKLAVELVLLP 261 (589)
T ss_pred CCCCCCHHHHHHHHHHHhhh
Confidence 99999999999999887743
No 184
>PRK04132 replication factor C small subunit; Provisional
Probab=99.15 E-value=7.1e-10 Score=134.09 Aligned_cols=170 Identities=19% Similarity=0.200 Sum_probs=125.2
Q ss_pred EEEEc--cCCCcHHHHHHHHHHhc-----CCCeeEeeccchhhhhhhhhHHHHHHHHHHHHhcC------CcEEEEcchh
Q 003696 394 ILLTG--APGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKA------PCIIFIDEID 460 (802)
Q Consensus 394 VLL~G--PPGTGKT~LArALA~ea-----g~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~a------P~ILfIDEID 460 (802)
-+..| |++.||||+|+++|+++ +.+++.+++++... ...++++...+.... ..|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 45568 99999999999999997 56899999998532 234555554443222 3599999999
Q ss_pred hhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccC
Q 003696 461 AVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK 540 (802)
Q Consensus 461 aLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~ 540 (802)
.| +...++.|+..|+.+ ...+.+|.+||.+..+.+++++ |+ ..+.|++|+.++...+|+..+.+.
T Consensus 641 ~L----------t~~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~E 705 (846)
T PRK04132 641 AL----------TQDAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAENE 705 (846)
T ss_pred cC----------CHHHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHHhc
Confidence 99 346788999999854 3467788889999999999987 76 788999999999999999888765
Q ss_pred CCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003696 541 PLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFA 590 (802)
Q Consensus 541 ~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A 590 (802)
.+. ++..+..|+..+.| +.+...++++.++. . ...||.+++...
T Consensus 706 gi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~~---~--~~~It~~~V~~~ 750 (846)
T PRK04132 706 GLELTEEGLQAILYIAEG-DMRRAINILQAAAA---L--DDKITDENVFLV 750 (846)
T ss_pred CCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH---h--cCCCCHHHHHHH
Confidence 543 45568888887776 45555555554432 1 246787776543
No 185
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.15 E-value=5.2e-10 Score=130.22 Aligned_cols=205 Identities=21% Similarity=0.305 Sum_probs=121.4
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhh
Q 003696 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM 430 (802)
Q Consensus 354 ~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~ 430 (802)
..+|++++|.+.+.+.+.+.+..+.. ....|||+|++||||+++|+++.... +.||+.++|..+.+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~ 269 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD 269 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH
Confidence 35799999999987777666653322 23359999999999999999986643 579999999887542
Q ss_pred hh-----hhhH-------HHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcc--ccc-------
Q 003696 431 FV-----GVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG--FEQ------- 489 (802)
Q Consensus 431 ~v-----G~~~-------k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg--~~~------- 489 (802)
.. |... .....+|+.|. ...|||||||.+. ...+..|+..++. |..
T Consensus 270 ~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~----------~~~Q~~Ll~~l~~~~~~~~g~~~~~ 336 (520)
T PRK10820 270 VVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMS----------PRMQAKLLRFLNDGTFRRVGEDHEV 336 (520)
T ss_pred HHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCC----------HHHHHHHHHHHhcCCcccCCCCcce
Confidence 11 1100 01122344433 3589999999993 3445566665543 111
Q ss_pred CCCEEEEeecCCCC-------CCChhhcCCCccceEEEccCCCHHHHHH----HHHHHhc----cCCC-CCccc---HHH
Q 003696 490 NEGIILMAATNLPD-------ILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQ----DKPL-ADDVD---VKA 550 (802)
Q Consensus 490 ~~~VIVIaATN~pe-------~LD~ALlRpGRFdr~I~v~lPd~eeR~~----ILk~~l~----~~~l-~~dvd---l~~ 550 (802)
..++.||++|+.+- .+.+.|.. |+. .+.+..|..++|.+ ++++++. +... ...++ +..
T Consensus 337 ~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~ 413 (520)
T PRK10820 337 HVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 413 (520)
T ss_pred eeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 23467888887531 12233332 332 46677777777763 3334433 2221 12233 344
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 003696 551 IARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATEL 587 (802)
Q Consensus 551 LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edl 587 (802)
|.+..--.+.++|++++.+|...+ .+..|+.+|+
T Consensus 414 L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 414 LTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 444322235677777777766543 4457777775
No 186
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.4e-10 Score=135.96 Aligned_cols=160 Identities=26% Similarity=0.359 Sum_probs=115.6
Q ss_pred ccccCCHHHHHHHHHHHHH----hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcC---CCeeEeeccchhhh
Q 003696 358 KDVKGCDDAKQELVEVVEY----LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSEFEEM 430 (802)
Q Consensus 358 dDViG~deaK~eL~eiV~~----Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag---~pfi~is~se~~e~ 430 (802)
+.|+|++++...+...+.. |.+|.+ +-...||.||+|+|||-||+++|..+. ..++.++.|+|.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~r-------PigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNR-------PIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCC-------CceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 4589999999999888875 333322 223678899999999999999999996 78999999999876
Q ss_pred ------------hhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccccc---C-----
Q 003696 431 ------------FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ---N----- 490 (802)
Q Consensus 431 ------------~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~---~----- 490 (802)
|+|..+ -..+-+..+.+..|||++|||+.. ...++|-||+.||.-.- +
T Consensus 564 HsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKA----------HpdV~nilLQVlDdGrLTD~~Gr~Vd 631 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKA----------HPDVFNLLLQVLDDGRLTDGQGRTVD 631 (786)
T ss_pred HHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhc----------CHHHHHHHHHHhcCCeeecCCCCEEe
Confidence 444332 223445556666789999999987 46789999998875211 1
Q ss_pred -CCEEEEeecCCCC----------------------------CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhc
Q 003696 491 -EGIILMAATNLPD----------------------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 538 (802)
Q Consensus 491 -~~VIVIaATN~pe----------------------------~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~ 538 (802)
.+.|+|.|+|-=. ...|.++. |+|.+|.|.+.+.+...+|+...+.
T Consensus 632 FrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 632 FRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred cceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence 2478899998421 11233343 7777888888888887777777664
No 187
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.12 E-value=3.4e-09 Score=110.36 Aligned_cols=194 Identities=21% Similarity=0.298 Sum_probs=136.8
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccc
Q 003696 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 426 (802)
Q Consensus 350 ~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se 426 (802)
|..+.+.+.+++|++.+|+.|.+-...+. .+.+..+|||+|..||||++|+||+-++. +..++.++-.+
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~--------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFA--------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHH--------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 45567889999999999999977665443 24556799999999999999999998876 56788888777
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcC-CcEEEEcchhhhccccccCCcchHHHHHHHHHHhccc--ccCCCEEEEeecCCCC
Q 003696 427 FEEMFVGVGARRVRSLFQAAKKKA-PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--EQNEGIILMAATNLPD 503 (802)
Q Consensus 427 ~~e~~vG~~~k~vr~lF~~Ar~~a-P~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~--~~~~~VIVIaATN~pe 503 (802)
+.. +-.+++..+... .-|||.|++-- .+.......|-..|||- ....+|+|-+|+|+-.
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF---------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSF---------EEGDDAYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCC---------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 644 445666665532 35999998621 12234455666667764 3346799999999876
Q ss_pred CCChhh--------------------cCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcc-cH----HHHHhcCCCC
Q 003696 504 ILDPAL--------------------TRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDV-DV----KAIARGTPGF 558 (802)
Q Consensus 504 ~LD~AL--------------------lRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dv-dl----~~LA~~t~G~ 558 (802)
.|+... .-..||...+.|.+++.++...|+.+++++..+.-+. .+ ...|..-.|-
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 554221 1135899999999999999999999999887766321 12 2233444556
Q ss_pred CHHHHHHHHHH
Q 003696 559 NGADLANLVNI 569 (802)
Q Consensus 559 SgaDL~nLvn~ 569 (802)
||+-..+.++.
T Consensus 266 SGR~A~QF~~~ 276 (287)
T COG2607 266 SGRVAWQFIRD 276 (287)
T ss_pred ccHhHHHHHHH
Confidence 66666555553
No 188
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.12 E-value=1.4e-10 Score=129.68 Aligned_cols=197 Identities=25% Similarity=0.316 Sum_probs=123.4
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHh----cCCCeeEeeccchhh
Q 003696 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE----AGVPFFYRAGSEFEE 429 (802)
Q Consensus 354 ~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~e----ag~pfi~is~se~~e 429 (802)
...|++++|.+...+++.+-+..+.. .-..||++|++||||+++|+++... .+.||+.+||..+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap----------~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAP----------SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCC----------CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 34699999999998888777764221 2247999999999999999999643 467999999998855
Q ss_pred hhhhh------------hHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccc---------c
Q 003696 430 MFVGV------------GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF---------E 488 (802)
Q Consensus 430 ~~vG~------------~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~---------~ 488 (802)
..... ....-..+|+.|..+ +||+|||+.+.. ..+..|+..||.- .
T Consensus 144 n~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~LP~----------~~Q~kLl~~le~g~~~rvG~~~~ 210 (403)
T COG1221 144 NLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRLPP----------EGQEKLLRVLEEGEYRRVGGSQP 210 (403)
T ss_pred CHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhCCH----------hHHHHHHHHHHcCceEecCCCCC
Confidence 42210 111223345544433 999999999943 3455666666541 1
Q ss_pred cCCCEEEEeecCCCCCCChhhcC-CCccc--eEEEccCCCHHHHHH----HHHHHh----ccCCCCCccc----HHHHHh
Q 003696 489 QNEGIILMAATNLPDILDPALTR-PGRFD--RHIVVPNPDVRGRQE----ILELYL----QDKPLADDVD----VKAIAR 553 (802)
Q Consensus 489 ~~~~VIVIaATN~pe~LD~ALlR-pGRFd--r~I~v~lPd~eeR~~----ILk~~l----~~~~l~~dvd----l~~LA~ 553 (802)
....|.+|+||| ..++.+++. ..-++ ..+.|.+|+.++|.. ++++++ ++.......+ +..+-.
T Consensus 211 ~~~dVRli~AT~--~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~ 288 (403)
T COG1221 211 RPVDVRLICATT--EDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLA 288 (403)
T ss_pred cCCCceeeeccc--cCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 234589999998 556555543 11122 144556677777643 444444 4443332222 333333
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 003696 554 GTPGFNGADLANLVNIAAIKAA 575 (802)
Q Consensus 554 ~t~G~SgaDL~nLvn~Aa~~Aa 575 (802)
..---+.++|.|+|+.++..+.
T Consensus 289 y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 289 YDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred CCCCCcHHHHHHHHHHHHHHhc
Confidence 3322378899999998887663
No 189
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.12 E-value=2.4e-09 Score=113.78 Aligned_cols=128 Identities=20% Similarity=0.263 Sum_probs=85.9
Q ss_pred CcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCC-------------CCCCChhhcCCCccce
Q 003696 451 PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL-------------PDILDPALTRPGRFDR 517 (802)
Q Consensus 451 P~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~-------------pe~LD~ALlRpGRFdr 517 (802)
|.+|||||++.| .-..+..|-..++. +-.-+||.|||+ |..+++.|+. |+ .
T Consensus 297 PGVLFIDEVhML----------DiEcFTyL~kalES---~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl-~ 360 (456)
T KOG1942|consen 297 PGVLFIDEVHML----------DIECFTYLHKALES---PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL-L 360 (456)
T ss_pred CcceEeeehhhh----------hhHHHHHHHHHhcC---CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-e
Confidence 556777777666 22333344444442 222355666664 3455666654 44 3
Q ss_pred EEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003696 518 HIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 594 (802)
Q Consensus 518 ~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~ri 594 (802)
.|..-+.+.++.++|++...+...+. ++..+..++.....-|-+-..+|+.-|.+.|...+++.|..+|++++.+-.
T Consensus 361 Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf 438 (456)
T KOG1942|consen 361 IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELF 438 (456)
T ss_pred EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHH
Confidence 55566778899999999998776665 334467777766566777777888888899999999999999999876543
No 190
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.12 E-value=6e-10 Score=126.19 Aligned_cols=141 Identities=26% Similarity=0.408 Sum_probs=87.8
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC-------eeEee----cc
Q 003696 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------FFYRA----GS 425 (802)
Q Consensus 357 FdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p-------fi~is----~s 425 (802)
++++.+.++..+.+...+. ..++++|+||||||||++|+++|..+... ++.++ ..
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 6677776666544433332 13589999999999999999999987431 12221 12
Q ss_pred chhhhhh--hhhHH----HHHHHHHHHHh--cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhc------------
Q 003696 426 EFEEMFV--GVGAR----RVRSLFQAAKK--KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMD------------ 485 (802)
Q Consensus 426 e~~e~~v--G~~~k----~vr~lF~~Ar~--~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLD------------ 485 (802)
++...+. +.+.. .+.++...|+. ..|++||||||+.... .+....++..|+
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani---------~kiFGel~~lLE~~~rg~~~~v~l 310 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL---------SKVFGEVMMLMEHDKRGENWSVPL 310 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH---------HHhhhhhhhhccccccccccceee
Confidence 3332221 11111 23344556654 3589999999998632 222233333222
Q ss_pred --------ccccCCCEEEEeecCCCC----CCChhhcCCCccceEEEccC
Q 003696 486 --------GFEQNEGIILMAATNLPD----ILDPALTRPGRFDRHIVVPN 523 (802)
Q Consensus 486 --------g~~~~~~VIVIaATN~pe----~LD~ALlRpGRFdr~I~v~l 523 (802)
.|.-..++.||||+|..+ .+|.|++| ||. .|.+.+
T Consensus 311 ~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 311 TYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred eccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 345567899999999987 79999999 995 455654
No 191
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.10 E-value=1.4e-10 Score=110.84 Aligned_cols=110 Identities=30% Similarity=0.390 Sum_probs=70.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhh--hhhhhHHH------HHHHHHHHHhcCCcEEEEcchhhhcc
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM--FVGVGARR------VRSLFQAAKKKAPCIIFIDEIDAVGS 464 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~--~vG~~~k~------vr~lF~~Ar~~aP~ILfIDEIDaLg~ 464 (802)
+|||+||||||||++|+.+|..++.+++.++++...+. +.|.-.-. ....+..+. ..++|++||||+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCC-
Confidence 58999999999999999999999999999988765332 11110000 000000000 146799999999872
Q ss_pred ccccCCcchHHHHHHHHHHhccc----------c-cCC------CEEEEeecCCCC----CCChhhcCCCcc
Q 003696 465 TRKQWEGHTKKTLHQLLVEMDGF----------E-QNE------GIILMAATNLPD----ILDPALTRPGRF 515 (802)
Q Consensus 465 ~r~~~~~~~~~tLnqLL~eLDg~----------~-~~~------~VIVIaATN~pe----~LD~ALlRpGRF 515 (802)
..++..|+..++.- . ... ++.+|+|+|..+ .+++++++ ||
T Consensus 79 ---------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 ---------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ---------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 34555555554431 0 111 489999999988 89999998 87
No 192
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.10 E-value=1.1e-09 Score=131.49 Aligned_cols=194 Identities=20% Similarity=0.272 Sum_probs=121.0
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhh-
Q 003696 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM- 430 (802)
Q Consensus 355 ~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~- 430 (802)
.+|++++|.+.+.+.+.+.+..+... ...|||+|++|||||++|+++.... +.||+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 47999999999988888877754332 2469999999999999999998754 679999999876432
Q ss_pred ----hhhhh-------HHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc---------cC
Q 003696 431 ----FVGVG-------ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QN 490 (802)
Q Consensus 431 ----~vG~~-------~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~---------~~ 490 (802)
..|.. .......|+.+. ..+|||||||.+. ...+..|+..++.-. ..
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~----------~~~Q~~L~~~l~~~~~~~~g~~~~~~ 509 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMP----------LELQPKLLRVLQEQEFERLGSNKIIQ 509 (686)
T ss_pred hhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCC----------HHHHHHHHHHHHhCCEEeCCCCCccc
Confidence 11110 011122344333 3599999999993 455666666664311 12
Q ss_pred CCEEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhccC----CCC----CcccHHHH
Q 003696 491 EGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----PLA----DDVDVKAI 551 (802)
Q Consensus 491 ~~VIVIaATN~pe~LD~ALlRpGRFdr-------~I~v~lPd~eeR~~----ILk~~l~~~----~l~----~dvdl~~L 551 (802)
.++.+|++|+.+ +...+ ..|+|.. .+.|..|..++|.+ ++++++.+. ... ....+..|
T Consensus 510 ~~~RiI~~t~~~--l~~~~-~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L 586 (686)
T PRK15429 510 TDVRLIAATNRD--LKKMV-ADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTL 586 (686)
T ss_pred ceEEEEEeCCCC--HHHHH-HcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 357888998853 22211 1133332 56777888888765 455554331 111 12224445
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHH
Q 003696 552 ARGTPGFNGADLANLVNIAAIKA 574 (802)
Q Consensus 552 A~~t~G~SgaDL~nLvn~Aa~~A 574 (802)
.+..=-.+.++|++++++|+..+
T Consensus 587 ~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 587 SNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhC
Confidence 44433346788888888877653
No 193
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.07 E-value=2.4e-09 Score=123.69 Aligned_cols=209 Identities=24% Similarity=0.305 Sum_probs=128.2
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCC----------CeeEeec
Q 003696 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV----------PFFYRAG 424 (802)
Q Consensus 355 ~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~----------pfi~is~ 424 (802)
..|.++.|+..+++.+.-.+ .....++|+||||+|||++++.+++.+.- .++.+.+
T Consensus 188 ~d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 47999999988776642211 12358999999999999999999874420 0111111
Q ss_pred c----------chh--------hhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcc
Q 003696 425 S----------EFE--------EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG 486 (802)
Q Consensus 425 s----------e~~--------e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg 486 (802)
. -|. ...+|.+...-...+..|.. .+|||||++.+ ...++..|++.|+.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~----------~~~~~~~L~~~LE~ 320 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF----------ERRTLDALREPIES 320 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC----------CHHHHHHHHHHHHc
Confidence 0 011 11223222112234445544 39999999887 24566677766643
Q ss_pred cc-----------cCCCEEEEeecCCCC---------------------CCChhhcCCCccceEEEccCCCHHH------
Q 003696 487 FE-----------QNEGIILMAATNLPD---------------------ILDPALTRPGRFDRHIVVPNPDVRG------ 528 (802)
Q Consensus 487 ~~-----------~~~~VIVIaATN~pe---------------------~LD~ALlRpGRFdr~I~v~lPd~ee------ 528 (802)
-. ...++.+|+|+|... .|..+++. |||.++.++.|+.+.
T Consensus 321 g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~~ 398 (506)
T PRK09862 321 GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTVV 398 (506)
T ss_pred CcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcccC
Confidence 11 134689999999742 36667777 999999999875321
Q ss_pred ----HHHHHHHHh--------ccCCCCCcccHHHH----------------HhcCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 003696 529 ----RQEILELYL--------QDKPLADDVDVKAI----------------ARGTPGFNGADLANLVNIAAIKAAVDGGE 580 (802)
Q Consensus 529 ----R~~ILk~~l--------~~~~l~~dvdl~~L----------------A~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~ 580 (802)
+..|-+... ++..+...+.-..+ +...-|.|.+....+++-|...|..++.+
T Consensus 399 ~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~ 478 (506)
T PRK09862 399 PGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSD 478 (506)
T ss_pred CCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 111211110 00000111110111 11234789999999999999999999999
Q ss_pred ccCHHHHHHHHH
Q 003696 581 KLTATELEFAKD 592 (802)
Q Consensus 581 ~It~edle~A~~ 592 (802)
.|+.+|+.+|+.
T Consensus 479 ~V~~~hv~eAl~ 490 (506)
T PRK09862 479 IITRQHLQEAVS 490 (506)
T ss_pred CCCHHHHHHHHH
Confidence 999999999976
No 194
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.07 E-value=1.1e-09 Score=108.89 Aligned_cols=133 Identities=23% Similarity=0.374 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC-----------------------
Q 003696 362 GCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP----------------------- 418 (802)
Q Consensus 362 G~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p----------------------- 418 (802)
|++++++.|...+. ..++|..+||+||+|+||+++|+++|+.+.+.
T Consensus 1 gq~~~~~~L~~~~~-----------~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIK-----------SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHH-----------CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHH-----------cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 78888888888776 56889999999999999999999999976332
Q ss_pred eeEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEE
Q 003696 419 FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGII 494 (802)
Q Consensus 419 fi~is~se~~e~~vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VI 494 (802)
++.++...... .-..+.++++...+.. ....|++|||+|.| .....|.||..|+. +..+++
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l----------~~~a~NaLLK~LEe--pp~~~~ 134 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL----------TEEAQNALLKTLEE--PPENTY 134 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-----------HHHHHHHHHHHHS--TTTTEE
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh----------hHHHHHHHHHHhcC--CCCCEE
Confidence 22222111100 1134566666655432 23569999999999 46899999999995 456778
Q ss_pred EEeecCCCCCCChhhcCCCccceEEEccC
Q 003696 495 LMAATNLPDILDPALTRPGRFDRHIVVPN 523 (802)
Q Consensus 495 VIaATN~pe~LD~ALlRpGRFdr~I~v~l 523 (802)
+|.+|+.++.|-+.+++ |+ ..+.+++
T Consensus 135 fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 135 FILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp EEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred EEEEECChHHChHHHHh--hc-eEEecCC
Confidence 88888999999999987 76 4566554
No 195
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4.8e-10 Score=120.39 Aligned_cols=123 Identities=33% Similarity=0.465 Sum_probs=88.2
Q ss_pred ccCCHHHHHHHHHHHHHhcCchhhhhcC-------CCCC-ceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh-h
Q 003696 360 VKGCDDAKQELVEVVEYLKNPSKFTRLG-------GKLP-KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-M 430 (802)
Q Consensus 360 ViG~deaK~eL~eiV~~Lk~p~~~~~lG-------~~~P-kgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e-~ 430 (802)
|+|++.+|+.|.=.|- ..|.++. ..+. .+|||.||.|+|||+||+.+|+.+++||-..++..+.+ .
T Consensus 63 VIGQe~AKKvLsVAVY-----NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 63 VIGQEQAKKVLSVAVY-----NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred eecchhhhceeeeeeh-----hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 8999999988864432 1122221 1111 37999999999999999999999999999999999876 4
Q ss_pred hhhhhHH-HHHHHHHHHH----hcCCcEEEEcchhhhccccccCC----cchHHHHHHHHHHhccc
Q 003696 431 FVGVGAR-RVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGF 487 (802)
Q Consensus 431 ~vG~~~k-~vr~lF~~Ar----~~aP~ILfIDEIDaLg~~r~~~~----~~~~~tLnqLL~eLDg~ 487 (802)
|+|+.-. .+..+.+.|. +....||||||||.+.++..+.+ -..+.++..||..++|.
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 8887544 3444554432 12235999999999988765432 12367788899999884
No 196
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.06 E-value=2.3e-09 Score=118.11 Aligned_cols=65 Identities=40% Similarity=0.583 Sum_probs=51.6
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcC--CCeeEeeccch
Q 003696 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEF 427 (802)
Q Consensus 356 tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag--~pfi~is~se~ 427 (802)
..+.++|+.++++..--+++.++.... -.+++||.||||||||.+|-++|+++| +||+.++++++
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~-------aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKI-------AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred ccccccChHHHHHHHHHHHHHHhcccc-------cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 356789999999999888888776432 236999999999999999999999997 89999988876
No 197
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.05 E-value=1.9e-09 Score=116.11 Aligned_cols=198 Identities=18% Similarity=0.163 Sum_probs=133.2
Q ss_pred ccccccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCe----
Q 003696 344 LNKEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF---- 419 (802)
Q Consensus 344 ~~~~~~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pf---- 419 (802)
.+-++.+++++.+.+|++++++....+.+..+ -.++| +.|+|||||||||+...+.|..+-.|.
T Consensus 27 ~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~-----------~~~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~~ 94 (360)
T KOG0990|consen 27 YPQPWVEKYRPPFLGIVIKQEPIWSTENRYSG-----------MPGLP-HLLFYGPPGTGKTSTILANARDFYSPHPTTS 94 (360)
T ss_pred cCCCCccCCCCchhhhHhcCCchhhHHHHhcc-----------CCCCC-cccccCCCCCCCCCchhhhhhhhcCCCCchh
Confidence 34567788888899999999998777766533 23455 899999999999999999999987651
Q ss_pred --eEeeccchhhhhhhhhHHHHHHHHHHHHh-------cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccC
Q 003696 420 --FYRAGSEFEEMFVGVGARRVRSLFQAAKK-------KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN 490 (802)
Q Consensus 420 --i~is~se~~e~~vG~~~k~vr~lF~~Ar~-------~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~ 490 (802)
..+++|+-.. .+.... --..|..++. ..+..+++||.|++ +..++|+|-+.++.+..+
T Consensus 95 m~lelnaSd~rg--id~vr~-qi~~fast~~~~~fst~~~fKlvILDEADaM----------T~~AQnALRRviek~t~n 161 (360)
T KOG0990|consen 95 MLLELNASDDRG--IDPVRQ-QIHLFASTQQPTTYSTHAAFKLVILDEADAM----------TRDAQNALRRVIEKYTAN 161 (360)
T ss_pred HHHHhhccCccC--CcchHH-HHHHHHhhccceeccccCceeEEEecchhHh----------hHHHHHHHHHHHHHhccc
Confidence 1122222111 111111 1234555553 36789999999999 467888888888877766
Q ss_pred CCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHhcCCCCCHHHHHHHHHH
Q 003696 491 EGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDV-DVKAIARGTPGFNGADLANLVNI 569 (802)
Q Consensus 491 ~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dv-dl~~LA~~t~G~SgaDL~nLvn~ 569 (802)
..+++ .+|.|..+.|+++. ||. .+.+.+-+...-..++.+++......... -...+++ .+-+|++..+|.
T Consensus 162 ~rF~i--i~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r----~s~gDmr~a~n~ 232 (360)
T KOG0990|consen 162 TRFAT--ISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGR----LSVGDMRVALNY 232 (360)
T ss_pred eEEEE--eccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHH----HhHHHHHHHHHH
Confidence 65554 57999999999886 663 34566777777778888888655444222 2334444 355677777666
Q ss_pred HHHHHH
Q 003696 570 AAIKAA 575 (802)
Q Consensus 570 Aa~~Aa 575 (802)
....+.
T Consensus 233 Lqs~~~ 238 (360)
T KOG0990|consen 233 LQSILK 238 (360)
T ss_pred HHHHHH
Confidence 554443
No 198
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.7e-09 Score=115.47 Aligned_cols=81 Identities=26% Similarity=0.368 Sum_probs=61.3
Q ss_pred cEEEEcchhhhccccccCC--cchHHHHHHHHHHhcccc--------cCCCEEEEeecC----CCCCCChhhcCCCccce
Q 003696 452 CIIFIDEIDAVGSTRKQWE--GHTKKTLHQLLVEMDGFE--------QNEGIILMAATN----LPDILDPALTRPGRFDR 517 (802)
Q Consensus 452 ~ILfIDEIDaLg~~r~~~~--~~~~~tLnqLL~eLDg~~--------~~~~VIVIaATN----~pe~LD~ALlRpGRFdr 517 (802)
.||||||||.++.+.+.+. -..+.++..||-.++|.. ....+++||+.- .|.+|=|.|. |||.-
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCce
Confidence 3999999999987664322 234567778888887742 234588888764 3778888886 69999
Q ss_pred EEEccCCCHHHHHHHHH
Q 003696 518 HIVVPNPDVRGRQEILE 534 (802)
Q Consensus 518 ~I~v~lPd~eeR~~ILk 534 (802)
++++...+.++-..||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999999888775
No 199
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.02 E-value=6.4e-10 Score=111.37 Aligned_cols=131 Identities=27% Similarity=0.407 Sum_probs=83.0
Q ss_pred ccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhh-----
Q 003696 360 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF----- 431 (802)
Q Consensus 360 ViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~----- 431 (802)
|+|.+.+.+++.+.+..+.. .|..|||+|++||||+++|++|.+.. +.||+.++|+.+....
T Consensus 1 liG~s~~m~~~~~~~~~~a~----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 57888887777777664332 33579999999999999999998865 5799999998875431
Q ss_pred hhhhH-------HHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcc--cc-------cCCCEEE
Q 003696 432 VGVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG--FE-------QNEGIIL 495 (802)
Q Consensus 432 vG~~~-------k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg--~~-------~~~~VIV 495 (802)
.|... .....+|+.|... +||||||+.|. ...+..|+..|+. |. ...++.|
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 137 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLP----------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRI 137 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-----------HHHHHHHHHHHHHSEEECCTSSSEEE--EEE
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhH----------HHHHHHHHHHHhhchhccccccccccccceE
Confidence 22110 1122566666554 99999999993 4566666666653 11 1236899
Q ss_pred EeecCCCCCCChhhcCCCccc
Q 003696 496 MAATNLPDILDPALTRPGRFD 516 (802)
Q Consensus 496 IaATN~pe~LD~ALlRpGRFd 516 (802)
|++|+ ..|...+.. |+|.
T Consensus 138 I~st~--~~l~~~v~~-g~fr 155 (168)
T PF00158_consen 138 IASTS--KDLEELVEQ-GRFR 155 (168)
T ss_dssp EEEES--S-HHHHHHT-TSS-
T ss_pred EeecC--cCHHHHHHc-CCCh
Confidence 99999 455554443 6664
No 200
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=6.1e-10 Score=125.48 Aligned_cols=210 Identities=26% Similarity=0.339 Sum_probs=119.4
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcC-----------------
Q 003696 354 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG----------------- 416 (802)
Q Consensus 354 ~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag----------------- 416 (802)
...|.||+|++.+|+.|..... |+ +++|++||||||||++|+-+..-+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA-----------Gg---HnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA-----------GG---HNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh-----------cC---CcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 3479999999999999977664 43 4899999999999999998876331
Q ss_pred ------------CCeeEeeccchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHh
Q 003696 417 ------------VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEM 484 (802)
Q Consensus 417 ------------~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eL 484 (802)
.||..-..+.-....+|.+..---.-...|. ..||||||+-.+ ..++++.|.+-|
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH---~GVLFLDElpef----------~~~iLe~LR~PL 307 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAH---NGVLFLDELPEF----------KRSILEALREPL 307 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeec---CCEEEeeccchh----------hHHHHHHHhCcc
Confidence 0111100000000011111000000000011 249999998766 346777777766
Q ss_pred cccc-----------cCCCEEEEeecCCCC-----------------------CCChhhcCCCccceEEEccCCCHHHHH
Q 003696 485 DGFE-----------QNEGIILMAATNLPD-----------------------ILDPALTRPGRFDRHIVVPNPDVRGRQ 530 (802)
Q Consensus 485 Dg~~-----------~~~~VIVIaATN~pe-----------------------~LD~ALlRpGRFdr~I~v~lPd~eeR~ 530 (802)
+.-. -..++.+|+|+|..- .|-..+++ |||..+.++.++..++.
T Consensus 308 E~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e~~ 385 (490)
T COG0606 308 ENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGELI 385 (490)
T ss_pred ccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHHHhh
Confidence 5421 123477888888531 22334444 89999988887633331
Q ss_pred --------------HHHHHH----hccCCC--CC----------------cccHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 003696 531 --------------EILELY----LQDKPL--AD----------------DVDVKAIARGTPGFNGADLANLVNIAAIKA 574 (802)
Q Consensus 531 --------------~ILk~~----l~~~~l--~~----------------dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~A 574 (802)
.+++.+ .+.... .. +.++...+-..-++|.+....+++-|.-.|
T Consensus 386 ~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTiA 465 (490)
T COG0606 386 RQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTIA 465 (490)
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhhh
Confidence 121111 111111 11 111222222334567777778888777777
Q ss_pred HHhCCCccCHHHHHHHHH
Q 003696 575 AVDGGEKLTATELEFAKD 592 (802)
Q Consensus 575 a~~~~~~It~edle~A~~ 592 (802)
-.++.+.|...|+.+|+.
T Consensus 466 DL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 466 DLEGSEQIERSHLAEAIS 483 (490)
T ss_pred cccCcchhhHHHHHHHHh
Confidence 777777888888877764
No 201
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=9.1e-09 Score=113.16 Aligned_cols=135 Identities=16% Similarity=0.243 Sum_probs=98.6
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHhcCCCe-------eEe---------eccchhhhh--h--hhhHHHHHHHHHHH
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF-------FYR---------AGSEFEEMF--V--GVGARRVRSLFQAA 446 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~eag~pf-------i~i---------s~se~~e~~--v--G~~~k~vr~lF~~A 446 (802)
.++.|+++||+||+|+||+++|+++|+.+.+.- -.+ +.+++.... . ..+...+|++-+.+
T Consensus 20 ~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~ 99 (325)
T PRK06871 20 QGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKV 99 (325)
T ss_pred cCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999999764311 000 011111000 0 12345677765554
Q ss_pred Hh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEcc
Q 003696 447 KK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVP 522 (802)
Q Consensus 447 r~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~ 522 (802)
.. ..-.|++||++|.| .....|.||+.|+. +..++++|.+|+.++.|.|.+++ |+ ..+.++
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m----------~~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~ 164 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERL----------TEAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTWLIH 164 (325)
T ss_pred hhccccCCceEEEEechhhh----------CHHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEEeCC
Confidence 43 33459999999999 46789999999995 66677888889999999999987 77 678999
Q ss_pred CCCHHHHHHHHHHH
Q 003696 523 NPDVRGRQEILELY 536 (802)
Q Consensus 523 lPd~eeR~~ILk~~ 536 (802)
+|+.++..+.|...
T Consensus 165 ~~~~~~~~~~L~~~ 178 (325)
T PRK06871 165 PPEEQQALDWLQAQ 178 (325)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999888888764
No 202
>PRK08116 hypothetical protein; Validated
Probab=98.98 E-value=2.7e-09 Score=114.43 Aligned_cols=155 Identities=20% Similarity=0.263 Sum_probs=88.2
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhh
Q 003696 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF 431 (802)
Q Consensus 355 ~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~ 431 (802)
.||++..-.+.....+..+..++++. .... ..+.|++|+|+||||||+||.|+|+++ +.++++++.+++...+
T Consensus 82 ~tFdnf~~~~~~~~a~~~a~~y~~~~---~~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 82 STFENFLFDKGSEKAYKIARKYVKKF---EEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred cchhcccCChHHHHHHHHHHHHHHHH---Hhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 46776654444333343344433322 1111 224589999999999999999999975 7899999988876653
Q ss_pred hhh----hHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCC-CC--
Q 003696 432 VGV----GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP-DI-- 504 (802)
Q Consensus 432 vG~----~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~p-e~-- 504 (802)
... ......++++... ...+|+|||++.... ....+..|...++....+. ..+|.|||.+ +.
T Consensus 158 ~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~~--------t~~~~~~l~~iin~r~~~~-~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 158 KSTYKSSGKEDENEIIRSLV--NADLLILDDLGAERD--------TEWAREKVYNIIDSRYRKG-LPTIVTTNLSLEELK 226 (268)
T ss_pred HHHHhccccccHHHHHHHhc--CCCEEEEecccCCCC--------CHHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHH
Confidence 221 1111223333332 346999999965311 2334445555555433332 3455577764 33
Q ss_pred --CChhhcCCCcc---ceEEEccCCCH
Q 003696 505 --LDPALTRPGRF---DRHIVVPNPDV 526 (802)
Q Consensus 505 --LD~ALlRpGRF---dr~I~v~lPd~ 526 (802)
++..+.. |+ ...|.+..||.
T Consensus 227 ~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 227 NQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred HHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 3555554 53 23566666765
No 203
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=3.9e-09 Score=116.76 Aligned_cols=135 Identities=19% Similarity=0.264 Sum_probs=99.6
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHhcCCCee---Eeec--------------cchhhhh------------------
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF---YRAG--------------SEFEEMF------------------ 431 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi---~is~--------------se~~e~~------------------ 431 (802)
..++|+++||+||+|+||+++|+++|+.+.+..- ...| .++....
T Consensus 17 ~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~ 96 (342)
T PRK06964 17 RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEA 96 (342)
T ss_pred cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccc
Confidence 3589999999999999999999999997754210 0000 1110000
Q ss_pred -------------hhhhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEE
Q 003696 432 -------------VGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGII 494 (802)
Q Consensus 432 -------------vG~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VI 494 (802)
-..+.+.+|++.+.+.. ..-.|++||++|.| ...+.|.||+.++ ++..+++
T Consensus 97 ~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m----------~~~AaNaLLKtLE--EPp~~t~ 164 (342)
T PRK06964 97 DADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL----------NVAAANALLKTLE--EPPPGTV 164 (342)
T ss_pred hhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc----------CHHHHHHHHHHhc--CCCcCcE
Confidence 01123566766655432 23359999999999 4678999999999 4677888
Q ss_pred EEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHH
Q 003696 495 LMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELY 536 (802)
Q Consensus 495 VIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~ 536 (802)
+|.+|+.++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 165 fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 165 FLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 88899999999999988 88 68999999999998888764
No 204
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=1.3e-08 Score=111.75 Aligned_cols=134 Identities=19% Similarity=0.269 Sum_probs=95.7
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHhcCCCee-------------Eeeccchhhh-----h------hhhhHHHHHHH
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF-------------YRAGSEFEEM-----F------VGVGARRVRSL 442 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi-------------~is~se~~e~-----~------vG~~~k~vr~l 442 (802)
.+++|..+||+||+|+||+++|.++|..+.+.-- .-+..|+.-. . ...+.+.+|++
T Consensus 22 ~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l 101 (319)
T PRK08769 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREI 101 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHH
Confidence 5788999999999999999999999987643100 0001111100 0 01234566776
Q ss_pred HHHHHhc----CCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceE
Q 003696 443 FQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRH 518 (802)
Q Consensus 443 F~~Ar~~----aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~ 518 (802)
.+.+... .-.|++||++|.| .....|.||+.|+. +..++++|..|+.++.|-|.+++ |+ ..
T Consensus 102 ~~~~~~~p~~g~~kV~iI~~ae~m----------~~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RC-q~ 166 (319)
T PRK08769 102 SQKLALTPQYGIAQVVIVDPADAI----------NRAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RC-QR 166 (319)
T ss_pred HHHHhhCcccCCcEEEEeccHhhh----------CHHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hh-eE
Confidence 6655432 2359999999999 46789999999995 44566777778889999999987 77 67
Q ss_pred EEccCCCHHHHHHHHHH
Q 003696 519 IVVPNPDVRGRQEILEL 535 (802)
Q Consensus 519 I~v~lPd~eeR~~ILk~ 535 (802)
+.++.|+.++-.+.|..
T Consensus 167 i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 167 LEFKLPPAHEALAWLLA 183 (319)
T ss_pred eeCCCcCHHHHHHHHHH
Confidence 88999999888877764
No 205
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=1.3e-08 Score=112.33 Aligned_cols=152 Identities=16% Similarity=0.193 Sum_probs=104.6
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHhcCCC-------eeE---------eeccchhhhh-----hhhhHHHHHHHHHH
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------FFY---------RAGSEFEEMF-----VGVGARRVRSLFQA 445 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~eag~p-------fi~---------is~se~~e~~-----vG~~~k~vr~lF~~ 445 (802)
.+++|+.+||+||+|+||+++|+++|..+-+. .-. -+..++.... ...+.+.+|++-+.
T Consensus 20 ~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~ 99 (334)
T PRK07993 20 AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEK 99 (334)
T ss_pred cCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHH
Confidence 57889999999999999999999999976431 100 0111111000 01234456666555
Q ss_pred HHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEc
Q 003696 446 AKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVV 521 (802)
Q Consensus 446 Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v 521 (802)
+.. ..-.|++||++|.| ..++.|.||+.|+. +..+.++|..|+.++.|.|.+++ |+. .+.+
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m----------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~ 164 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALL----------TDAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-LHYL 164 (334)
T ss_pred HhhccccCCceEEEEcchHhh----------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-cccC
Confidence 432 34469999999999 46789999999995 66778888889999999999987 875 6799
Q ss_pred cCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCC
Q 003696 522 PNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPG 557 (802)
Q Consensus 522 ~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G 557 (802)
++|+.++..+.|.... ... ..+...+++.+.|
T Consensus 165 ~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G 196 (334)
T PRK07993 165 APPPEQYALTWLSREV---TMS-QDALLAALRLSAG 196 (334)
T ss_pred CCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCC
Confidence 9999888887775421 222 2224455555555
No 206
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.92 E-value=1.3e-08 Score=113.61 Aligned_cols=160 Identities=26% Similarity=0.391 Sum_probs=104.0
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc-------CCCeeEe-----
Q 003696 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYR----- 422 (802)
Q Consensus 355 ~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea-------g~pfi~i----- 422 (802)
..|.-++|++..|..|--. .-+|.. .|+|+.|+.|||||+++||||.-+ |+||-.-
T Consensus 14 ~pf~aivGqd~lk~aL~l~---av~P~i---------ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLN---AVDPQI---------GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhh---hccccc---------ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 4689999999988777332 223322 489999999999999999999855 3433210
Q ss_pred -eccc-------------------hhhhhhhhhHHHHH------HHHH----------HHHhcCCcEEEEcchhhhcccc
Q 003696 423 -AGSE-------------------FEEMFVGVGARRVR------SLFQ----------AAKKKAPCIIFIDEIDAVGSTR 466 (802)
Q Consensus 423 -s~se-------------------~~e~~vG~~~k~vr------~lF~----------~Ar~~aP~ILfIDEIDaLg~~r 466 (802)
.|.+ +...-.|.++.++- ...+ .|+.+. .||+|||+..|
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnR-GIlYvDEvnlL---- 156 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANR-GILYVDEVNLL---- 156 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccC-CEEEEeccccc----
Confidence 0010 11111222333211 1111 112222 49999999988
Q ss_pred ccCCcchHHHHHHHHHHhcc---------c--ccCCCEEEEeecCCCC-CCChhhcCCCccceEEEccCC-CHHHHHHHH
Q 003696 467 KQWEGHTKKTLHQLLVEMDG---------F--EQNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNP-DVRGRQEIL 533 (802)
Q Consensus 467 ~~~~~~~~~tLnqLL~eLDg---------~--~~~~~VIVIaATN~pe-~LD~ALlRpGRFdr~I~v~lP-d~eeR~~IL 533 (802)
..+.++.||..+.. + ....++++|+|+|.-+ .|-+.|+. ||...+.+..| +.++|.+|.
T Consensus 157 ------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii 228 (423)
T COG1239 157 ------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEII 228 (423)
T ss_pred ------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHH
Confidence 46777888876643 2 2234699999999753 78888887 99999988755 788999998
Q ss_pred HHHhcc
Q 003696 534 ELYLQD 539 (802)
Q Consensus 534 k~~l~~ 539 (802)
+..+..
T Consensus 229 ~r~~~f 234 (423)
T COG1239 229 RRRLAF 234 (423)
T ss_pred HHHHHh
Confidence 876653
No 207
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.91 E-value=1.9e-08 Score=111.42 Aligned_cols=85 Identities=19% Similarity=0.221 Sum_probs=63.5
Q ss_pred Ccc-cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCC-------CeeEeec---
Q 003696 356 TFK-DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-------PFFYRAG--- 424 (802)
Q Consensus 356 tFd-DViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~-------pfi~is~--- 424 (802)
-|+ |+.|+++++.++.+ +++.... . .....+.++|+||||||||++|++|++.++. |++.+.+
T Consensus 48 ~F~~~~~G~~~~i~~lv~---~l~~~a~--g-~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 48 FFDHDFFGMEEAIERFVN---YFKSAAQ--G-LEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred ccchhccCcHHHHHHHHH---HHHHHHh--c-CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 488 99999999666654 4444332 1 1223467999999999999999999999976 9999988
Q ss_pred -cchhhhhhhhhHHHHHHHHHHH
Q 003696 425 -SEFEEMFVGVGARRVRSLFQAA 446 (802)
Q Consensus 425 -se~~e~~vG~~~k~vr~lF~~A 446 (802)
+.+.+..++.....+|+.|...
T Consensus 122 ~sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 122 ESPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCCCccCCcccCCHHHHHHHHHH
Confidence 7777777777777776666443
No 208
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2e-08 Score=113.65 Aligned_cols=155 Identities=25% Similarity=0.346 Sum_probs=106.0
Q ss_pred HHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeecc-chhhhhhhhhHHHHHHHHHHHHhcCC
Q 003696 373 VVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS-EFEEMFVGVGARRVRSLFQAAKKKAP 451 (802)
Q Consensus 373 iV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~s-e~~e~~vG~~~k~vr~lF~~Ar~~aP 451 (802)
++..+++++++ .-..+||.||||+|||.||-.+|...+.||+.+-.. ++...-....-..++..|+.|++..-
T Consensus 526 lv~qvk~s~~s------~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~l 599 (744)
T KOG0741|consen 526 LVQQVKNSERS------PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPL 599 (744)
T ss_pred HHHHhhccccC------cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcc
Confidence 45555666542 235899999999999999999999999999976443 33332222223468899999999888
Q ss_pred cEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCC-CEEEEeecCCCCCCC-hhhcCCCccceEEEccCCCH-HH
Q 003696 452 CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNE-GIILMAATNLPDILD-PALTRPGRFDRHIVVPNPDV-RG 528 (802)
Q Consensus 452 ~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~-~VIVIaATN~pe~LD-~ALlRpGRFdr~I~v~lPd~-ee 528 (802)
+||++|+|+.|..--.-+...++.++..|+..+..-.+.+ +.+|++||...+.|. -.++. .|+..+++|.... ++
T Consensus 600 siivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 600 SIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQ 677 (744)
T ss_pred eEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHH
Confidence 9999999999853222222345667777888777654443 477778877655442 22333 6888999986554 56
Q ss_pred HHHHHHH
Q 003696 529 RQEILEL 535 (802)
Q Consensus 529 R~~ILk~ 535 (802)
..+++..
T Consensus 678 ~~~vl~~ 684 (744)
T KOG0741|consen 678 LLEVLEE 684 (744)
T ss_pred HHHHHHH
Confidence 6666654
No 209
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.90 E-value=8.4e-09 Score=117.09 Aligned_cols=203 Identities=22% Similarity=0.261 Sum_probs=121.4
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhh
Q 003696 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV 432 (802)
Q Consensus 356 tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~v 432 (802)
.|.+++|.....+.+.+.+..+.. ....++|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAP----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 466788988887777665553322 22469999999999999999998765 57999999988744321
Q ss_pred hhh------------HHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc--c-------CC
Q 003696 433 GVG------------ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--Q-------NE 491 (802)
Q Consensus 433 G~~------------~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~--~-------~~ 491 (802)
..- .......|..+ ...+|||||||.|. ...+..|+..++.-. . ..
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~----------~~~q~~l~~~l~~~~~~~~~~~~~~~~ 273 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLP----------LNLQAKLLRFLQERVIERLGGREEIPV 273 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCC----------HHHHHHHHHHHhhCeEEeCCCCceeee
Confidence 110 00001112222 24599999999993 345566666654311 1 12
Q ss_pred CEEEEeecCCCC-------CCChhhcCCCccceEEEccCCCHHHHHH----HHHHHhccC----CCC----CcccHHHHH
Q 003696 492 GIILMAATNLPD-------ILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQDK----PLA----DDVDVKAIA 552 (802)
Q Consensus 492 ~VIVIaATN~pe-------~LD~ALlRpGRFdr~I~v~lPd~eeR~~----ILk~~l~~~----~l~----~dvdl~~LA 552 (802)
++.+|++|+..- .+.+.|.. |+ ..+.+..|..++|.+ ++++++++. ... .+..+..+.
T Consensus 274 ~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 350 (445)
T TIGR02915 274 DVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALE 350 (445)
T ss_pred ceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 578888887531 22222222 23 145677788887765 444444321 111 222345555
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 003696 553 RGTPGFNGADLANLVNIAAIKAAVDGGEKLTATEL 587 (802)
Q Consensus 553 ~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edl 587 (802)
+..--.+.++|++++++|+..+ ....|+.+++
T Consensus 351 ~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 351 AHAWPGNVRELENKVKRAVIMA---EGNQITAEDL 382 (445)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 5543346788888888877544 3457777765
No 210
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=3e-08 Score=108.85 Aligned_cols=131 Identities=18% Similarity=0.273 Sum_probs=96.4
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHhcCCC-----------------------eeEeeccchhhhhhhhhHHHHHHHH
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-----------------------FFYRAGSEFEEMFVGVGARRVRSLF 443 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~eag~p-----------------------fi~is~se~~e~~vG~~~k~vr~lF 443 (802)
.+++|.++||+||.|+||+++|+++|..+.+. |+.+.... ... ..+.+.+|++-
T Consensus 21 ~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~vdqiR~l~ 97 (319)
T PRK06090 21 AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGK--SITVEQIRQCN 97 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCC--cCCHHHHHHHH
Confidence 57889999999999999999999999976331 22221110 000 01234566655
Q ss_pred HHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEE
Q 003696 444 QAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHI 519 (802)
Q Consensus 444 ~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I 519 (802)
+.+.. ..-.|++||++|.+ .....|.||+.++. +..++++|..|+.++.|-|.+++ |+ ..+
T Consensus 98 ~~~~~~~~~~~~kV~iI~~ae~m----------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RC-q~~ 162 (319)
T PRK06090 98 RLAQESSQLNGYRLFVIEPADAM----------NESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RC-QQW 162 (319)
T ss_pred HHHhhCcccCCceEEEecchhhh----------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc-eeE
Confidence 44432 23469999999999 36789999999995 56678888888999999999987 77 588
Q ss_pred EccCCCHHHHHHHHHH
Q 003696 520 VVPNPDVRGRQEILEL 535 (802)
Q Consensus 520 ~v~lPd~eeR~~ILk~ 535 (802)
.+++|+.++..+.|..
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 163 VVTPPSTAQAMQWLKG 178 (319)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 9999999888887764
No 211
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.87 E-value=4e-08 Score=118.89 Aligned_cols=130 Identities=20% Similarity=0.143 Sum_probs=77.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhcC-------CCeeEeeccchhhhh-hhhhHHHH-HHHHHHHHhcCCcEEEEcchhh
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEAG-------VPFFYRAGSEFEEMF-VGVGARRV-RSLFQAAKKKAPCIIFIDEIDA 461 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~eag-------~pfi~is~se~~e~~-vG~~~k~v-r~lF~~Ar~~aP~ILfIDEIDa 461 (802)
..+|||+|+||||||.+|++++.-.. .++..+.+....... ...+...+ ...+..| ...+++|||+|.
T Consensus 492 dihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlA---dgGtL~IDEidk 568 (915)
T PTZ00111 492 IINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLA---NGGVCCIDELDK 568 (915)
T ss_pred CceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEc---CCCeEEecchhh
Confidence 34799999999999999999998542 344443333221100 00000000 0011111 235999999999
Q ss_pred hccccccCCcchHHHHHHHHHHhcccc-----------cCCCEEEEeecCCCC-------------CCChhhcCCCccce
Q 003696 462 VGSTRKQWEGHTKKTLHQLLVEMDGFE-----------QNEGIILMAATNLPD-------------ILDPALTRPGRFDR 517 (802)
Q Consensus 462 Lg~~r~~~~~~~~~tLnqLL~eLDg~~-----------~~~~VIVIaATN~pe-------------~LD~ALlRpGRFdr 517 (802)
+. ...+..|+..|+.-. -+.++.||||+|... .|+++|++ |||.
T Consensus 569 ms----------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDL 636 (915)
T PTZ00111 569 CH----------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDL 636 (915)
T ss_pred CC----------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcE
Confidence 93 345566676665311 134688999999742 56789988 9998
Q ss_pred EEE-ccCCCHHHHHHHHHH
Q 003696 518 HIV-VPNPDVRGRQEILEL 535 (802)
Q Consensus 518 ~I~-v~lPd~eeR~~ILk~ 535 (802)
.+. ++.|+.+.=..|-++
T Consensus 637 If~l~D~~d~~~D~~lA~h 655 (915)
T PTZ00111 637 IYLVLDHIDQDTDQLISLS 655 (915)
T ss_pred EEEecCCCChHHHHHHHHH
Confidence 654 456776554444333
No 212
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.85 E-value=6.2e-09 Score=104.60 Aligned_cols=108 Identities=28% Similarity=0.346 Sum_probs=72.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCC----CeeEeeccchhhhhhhhhHHHHHHHHHH------HHhcCCcEEEEcchhh
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGV----PFFYRAGSEFEEMFVGVGARRVRSLFQA------AKKKAPCIIFIDEIDA 461 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~----pfi~is~se~~e~~vG~~~k~vr~lF~~------Ar~~aP~ILfIDEIDa 461 (802)
..+||+||+|||||.+|+++|..+.. +++.++++++.+. +.....+..++.. .... .||||||||.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~--gVVllDEidK 79 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEG--GVVLLDEIDK 79 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHH--TEEEEETGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccch--hhhhhHHHhh
Confidence 36899999999999999999999996 9999999998771 1111222222221 1122 3999999999
Q ss_pred hccccccCC-cchHHHHHHHHHHhcccc---------cCCCEEEEeecCCCC
Q 003696 462 VGSTRKQWE-GHTKKTLHQLLVEMDGFE---------QNEGIILMAATNLPD 503 (802)
Q Consensus 462 Lg~~r~~~~-~~~~~tLnqLL~eLDg~~---------~~~~VIVIaATN~pe 503 (802)
+..+.+... -....+++.||..||+-. .-.++++|+|+|.-.
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 966421111 112467778888776521 124689999999644
No 213
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.84 E-value=6.8e-08 Score=112.70 Aligned_cols=196 Identities=19% Similarity=0.258 Sum_probs=130.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHhc----------CCCeeEeeccchhhh---hh-------hh------hHHHHHHHHHHH
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRAGSEFEEM---FV-------GV------GARRVRSLFQAA 446 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~ea----------g~pfi~is~se~~e~---~v-------G~------~~k~vr~lF~~A 446 (802)
.+++.|-||||||.+++.+-.++ ..+|+++++-.+.+. |. |. +...+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 68899999999999999998855 256788888766442 21 11 112233333321
Q ss_pred -HhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhc-C-CCccce-EEEcc
Q 003696 447 -KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT-R-PGRFDR-HIVVP 522 (802)
Q Consensus 447 -r~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALl-R-pGRFdr-~I~v~ 522 (802)
....++||+|||+|.|..+ .+.++..++..-. .++.+++||+..|..+....-|. | .+|++. .+.|.
T Consensus 504 k~~~~~~VvLiDElD~Lvtr-------~QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~ 574 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTR-------SQDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQ 574 (767)
T ss_pred CCCCCCEEEEeccHHHHhcc-------cHHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhccceeeecC
Confidence 1245789999999999763 3556666654322 35667888888876543322222 1 235553 78999
Q ss_pred CCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCH--HHHHHHHHHHHHHHHHhCC-------CccCHHHHHHHHHH
Q 003696 523 NPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNG--ADLANLVNIAAIKAAVDGG-------EKLTATELEFAKDR 593 (802)
Q Consensus 523 lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~Sg--aDL~nLvn~Aa~~Aa~~~~-------~~It~edle~A~~r 593 (802)
+.+..+..+|+...+.....-....++-+|+.....|| +....+|++|...|..+.. ..|++.|+..|++.
T Consensus 575 pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~e 654 (767)
T KOG1514|consen 575 PYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINE 654 (767)
T ss_pred CCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHH
Confidence 99999999999999987643333335555665554554 4455778888888877665 56888899988887
Q ss_pred Hhcc
Q 003696 594 ILMG 597 (802)
Q Consensus 594 il~g 597 (802)
++..
T Consensus 655 m~~~ 658 (767)
T KOG1514|consen 655 MLAS 658 (767)
T ss_pred Hhhh
Confidence 6543
No 214
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.83 E-value=3.5e-08 Score=112.93 Aligned_cols=203 Identities=22% Similarity=0.278 Sum_probs=124.4
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhh
Q 003696 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV 432 (802)
Q Consensus 356 tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~v 432 (802)
.|.+++|.....+.+.+.+..+.. ....+|++|++|||||++|+++.... +.||+.++|..+.....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSR----------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhc----------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 467899998887777766653332 23369999999999999999998865 57999999988743211
Q ss_pred hhhHHHHHHHHHHH---------------HhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc---------
Q 003696 433 GVGARRVRSLFQAA---------------KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--------- 488 (802)
Q Consensus 433 G~~~k~vr~lF~~A---------------r~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~--------- 488 (802)
-..+|... .......|||||||.+. ...+..|+..++.-.
T Consensus 206 ------~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~----------~~~q~~L~~~l~~~~~~~~~~~~~ 269 (469)
T PRK10923 206 ------ESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP----------LDVQTRLLRVLADGQFYRVGGYAP 269 (469)
T ss_pred ------HHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCC----------HHHHHHHHHHHhcCcEEeCCCCCe
Confidence 11222211 01124589999999993 345556666655311
Q ss_pred cCCCEEEEeecCCCC-------CCChhhcCCCccceEEEccCCCHHHHHH----HHHHHhccC----CCC----CcccHH
Q 003696 489 QNEGIILMAATNLPD-------ILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQDK----PLA----DDVDVK 549 (802)
Q Consensus 489 ~~~~VIVIaATN~pe-------~LD~ALlRpGRFdr~I~v~lPd~eeR~~----ILk~~l~~~----~l~----~dvdl~ 549 (802)
...++.+|++|+..- .+.+.|.. ||. .+.+..|..++|.+ ++.+++++. ... .+..+.
T Consensus 270 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 346 (469)
T PRK10923 270 VKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEA 346 (469)
T ss_pred EEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 112467888887531 23333333 332 45666666666654 555655431 111 222345
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003696 550 AIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFA 590 (802)
Q Consensus 550 ~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A 590 (802)
.|.+..=-.+.++|+++++++...+ ....|+.+|+...
T Consensus 347 ~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~ 384 (469)
T PRK10923 347 ALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGE 384 (469)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHh
Confidence 5555544446788888888877654 4567888887533
No 215
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.82 E-value=2.5e-08 Score=118.32 Aligned_cols=100 Identities=28% Similarity=0.369 Sum_probs=64.0
Q ss_pred CEEEEeecCCC--CCCChhhcCCCccc---eEEEccC--C-CHHHHHHHHHHHhccCC---CCCccc---HHHHHh---c
Q 003696 492 GIILMAATNLP--DILDPALTRPGRFD---RHIVVPN--P-DVRGRQEILELYLQDKP---LADDVD---VKAIAR---G 554 (802)
Q Consensus 492 ~VIVIaATN~p--e~LD~ALlRpGRFd---r~I~v~l--P-d~eeR~~ILk~~l~~~~---l~~dvd---l~~LA~---~ 554 (802)
++.||+++|.. ..+|+.|.. ||. ..+.+.. + +.+.+..+++...+... ....++ +..|.+ +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57888888874 567888877 775 4455442 2 34455556654443221 112333 222222 1
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003696 555 TPG------FNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDR 593 (802)
Q Consensus 555 t~G------~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~r 593 (802)
..| +..++|.++++.|...|..++.+.++.+|+..|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 111 347899999999999999999999999999988754
No 216
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.82 E-value=7.4e-08 Score=102.25 Aligned_cols=179 Identities=20% Similarity=0.241 Sum_probs=126.4
Q ss_pred ccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcC---CCe-----
Q 003696 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---VPF----- 419 (802)
Q Consensus 348 ~~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag---~pf----- 419 (802)
|+++..+.+|+.+.+.++....|+.+.. -...| ++|+|||+|+||-|.+.++-+++- ++=
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~-----------~~d~P-Hll~yGPSGaGKKTrimclL~elYG~gveklki~~ 70 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSS-----------TGDFP-HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIET 70 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhcc-----------cCCCC-eEEEECCCCCCchhhHHHHHHHHhCCCchheeeee
Confidence 3455667789999999998888876654 23455 899999999999999999998772 211
Q ss_pred ---------------------eEeeccchhhhhhhhhHHHHHHHHHHHHhcC---------CcEEEEcchhhhccccccC
Q 003696 420 ---------------------FYRAGSEFEEMFVGVGARRVRSLFQAAKKKA---------PCIIFIDEIDAVGSTRKQW 469 (802)
Q Consensus 420 ---------------------i~is~se~~e~~vG~~~k~vr~lF~~Ar~~a---------P~ILfIDEIDaLg~~r~~~ 469 (802)
++++.|+... ...-.+.++.....+.. -.+++|.|+|.+
T Consensus 71 ~t~~tpS~kklEistvsS~yHlEitPSDaG~----~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L------- 139 (351)
T KOG2035|consen 71 RTFTTPSKKKLEISTVSSNYHLEITPSDAGN----YDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL------- 139 (351)
T ss_pred EEEecCCCceEEEEEecccceEEeChhhcCc----ccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-------
Confidence 1222222111 01123445555443322 249999999999
Q ss_pred CcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcc-cH
Q 003696 470 EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDV-DV 548 (802)
Q Consensus 470 ~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dv-dl 548 (802)
+..++..|-+.|+.+..+.++|+ .+|....+-+++++ |+ ..|.+|.|+.++...++...+++..+.-.. -+
T Consensus 140 ---T~dAQ~aLRRTMEkYs~~~RlIl--~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l 211 (351)
T KOG2035|consen 140 ---TRDAQHALRRTMEKYSSNCRLIL--VCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELL 211 (351)
T ss_pred ---hHHHHHHHHHHHHHHhcCceEEE--EecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHH
Confidence 45778889999998877766555 56777888888887 65 578999999999999999999887766333 36
Q ss_pred HHHHhcCCC
Q 003696 549 KAIARGTPG 557 (802)
Q Consensus 549 ~~LA~~t~G 557 (802)
..|++.+.|
T Consensus 212 ~rIa~kS~~ 220 (351)
T KOG2035|consen 212 KRIAEKSNR 220 (351)
T ss_pred HHHHHHhcc
Confidence 677776554
No 217
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.82 E-value=5.3e-08 Score=110.75 Aligned_cols=205 Identities=23% Similarity=0.309 Sum_probs=122.6
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhh
Q 003696 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV 432 (802)
Q Consensus 356 tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~v 432 (802)
.+.+++|.......+.+.+..+... ...+|++|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALS----------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCC----------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 4567888887766665555433322 2379999999999999999997754 57999999988754321
Q ss_pred -----hhhH-------HHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc--c-------CC
Q 003696 433 -----GVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--Q-------NE 491 (802)
Q Consensus 433 -----G~~~-------k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~--~-------~~ 491 (802)
|... ......|..+ ...+|||||||.+. ...+..|+..++.-. . ..
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~----------~~~q~~L~~~l~~~~~~~~~~~~~~~~ 277 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMP----------LVLQAKLLRILQEREFERIGGHQTIKV 277 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCC----------HHHHHHHHHHHhcCcEEeCCCCceeee
Confidence 1000 0000112222 23599999999993 345566666654311 1 13
Q ss_pred CEEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhccC----CCC----CcccHHHHH
Q 003696 492 GIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----PLA----DDVDVKAIA 552 (802)
Q Consensus 492 ~VIVIaATN~pe~LD~ALlRpGRFdr-------~I~v~lPd~eeR~~----ILk~~l~~~----~l~----~dvdl~~LA 552 (802)
++.+|++||.+ +. .+.+.|+|.. .+.+..|...+|.+ ++.+++.+. ... .+..+..+.
T Consensus 278 ~~rii~~t~~~--l~-~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 354 (457)
T PRK11361 278 DIRIIAATNRD--LQ-AMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLT 354 (457)
T ss_pred ceEEEEeCCCC--HH-HHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 47888898853 22 2223344433 56677888887754 444444321 111 222244555
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 003696 553 RGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEF 589 (802)
Q Consensus 553 ~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~ 589 (802)
...--.+.++|++++++|...+ ....|+.+|+..
T Consensus 355 ~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~ 388 (457)
T PRK11361 355 AWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPP 388 (457)
T ss_pred cCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChH
Confidence 5443347788888888876543 455788877753
No 218
>PRK12377 putative replication protein; Provisional
Probab=98.77 E-value=4.6e-08 Score=103.95 Aligned_cols=69 Identities=22% Similarity=0.286 Sum_probs=49.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhhhhhH--HHHHHHHHHHHhcCCcEEEEcchhhh
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGA--RRVRSLFQAAKKKAPCIIFIDEIDAV 462 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~vG~~~--k~vr~lF~~Ar~~aP~ILfIDEIDaL 462 (802)
.+++|+||||||||+||.|+|+++ |..+++++..++.......-. ....+++... ....+|+|||++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 589999999999999999999987 677888888887664322110 0112233333 34579999999776
No 219
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.2e-08 Score=110.01 Aligned_cols=95 Identities=29% Similarity=0.472 Sum_probs=72.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh-hhhhhh-HHHHHHHHHHHH----hcCCcEEEEcchhhhcccc
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFVGVG-ARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTR 466 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e-~~vG~~-~k~vr~lF~~Ar----~~aP~ILfIDEIDaLg~~r 466 (802)
+|||.||+|+|||+||+.+|+-+++||..++|..+.. .|+|+. +..+..++..|. +....||||||+|.|+.+.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 7999999999999999999999999999999999854 588864 445566666542 2234699999999998554
Q ss_pred ccCC----cchHHHHHHHHHHhccc
Q 003696 467 KQWE----GHTKKTLHQLLVEMDGF 487 (802)
Q Consensus 467 ~~~~----~~~~~tLnqLL~eLDg~ 487 (802)
.... -..+.++..||..++|.
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred ccccccccccchhHHHHHHHHhccc
Confidence 3221 12356777888888773
No 220
>PRK15115 response regulator GlrR; Provisional
Probab=98.73 E-value=1.6e-07 Score=106.79 Aligned_cols=200 Identities=21% Similarity=0.276 Sum_probs=121.3
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhhhhh
Q 003696 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG 435 (802)
Q Consensus 359 DViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~vG~~ 435 (802)
.++|.......+.+.+..+.. ....++|+|++|||||++|+++.... +.||+.++|..+.+....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~----------~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~-- 202 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ----------SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLE-- 202 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc----------CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHH--
Confidence 466766554444443332221 12369999999999999999998764 579999999887443211
Q ss_pred HHHHHHHHHHH---------------HhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc---------cCC
Q 003696 436 ARRVRSLFQAA---------------KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNE 491 (802)
Q Consensus 436 ~k~vr~lF~~A---------------r~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~---------~~~ 491 (802)
..+|..+ ......+|||||||.|. ...+..|+..++.-. ...
T Consensus 203 ----~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~----------~~~q~~L~~~l~~~~~~~~g~~~~~~~ 268 (444)
T PRK15115 203 ----SELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP----------APLQVKLLRVLQERKVRPLGSNRDIDI 268 (444)
T ss_pred ----HHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCC----------HHHHHHHHHHHhhCCEEeCCCCceeee
Confidence 1222211 11224599999999993 345556666654311 112
Q ss_pred CEEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhccC----C--C--CCcccHHHHH
Q 003696 492 GIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----P--L--ADDVDVKAIA 552 (802)
Q Consensus 492 ~VIVIaATN~pe~LD~ALlRpGRFdr-------~I~v~lPd~eeR~~----ILk~~l~~~----~--l--~~dvdl~~LA 552 (802)
++.+|++|+. .++..+.+ |+|.. .+.+..|...+|.+ ++++++++. . . -.+..+..|.
T Consensus 269 ~~rii~~~~~--~l~~~~~~-~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 345 (444)
T PRK15115 269 DVRIISATHR--DLPKAMAR-GEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLM 345 (444)
T ss_pred eEEEEEeCCC--CHHHHHHc-CCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHH
Confidence 5788888884 35544443 55532 56677788888854 445555331 1 1 1233356666
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003696 553 RGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFA 590 (802)
Q Consensus 553 ~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A 590 (802)
...=..+.++|+++++.|...+ ....|+.+++...
T Consensus 346 ~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~~ 380 (444)
T PRK15115 346 TASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQA 380 (444)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCccChhhhhhh
Confidence 6653347788888888876543 4567888777543
No 221
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.71 E-value=9.1e-09 Score=98.62 Aligned_cols=109 Identities=29% Similarity=0.377 Sum_probs=59.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEeecc-chh-hhhhhhhHHHH-HHHHHHHHhcC---CcEEEEcchhhhcccc
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS-EFE-EMFVGVGARRV-RSLFQAAKKKA---PCIIFIDEIDAVGSTR 466 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is~s-e~~-e~~vG~~~k~v-r~lF~~Ar~~a---P~ILfIDEIDaLg~~r 466 (802)
+|||.|+||+|||++|+++|+.++..|..|.+. ++. ....|...-.. ...|.- ... ..|+++|||....
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~--~~GPif~~ill~DEiNrap--- 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEF--RPGPIFTNILLADEINRAP--- 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEE--EE-TT-SSEEEEETGGGS----
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEe--ecChhhhceeeecccccCC---
Confidence 589999999999999999999999999988774 332 11222110000 000000 001 1499999998873
Q ss_pred ccCCcchHHHHHHHHHHhccc---------ccCCCEEEEeecCCCC-----CCChhhcCCCcc
Q 003696 467 KQWEGHTKKTLHQLLVEMDGF---------EQNEGIILMAATNLPD-----ILDPALTRPGRF 515 (802)
Q Consensus 467 ~~~~~~~~~tLnqLL~eLDg~---------~~~~~VIVIaATN~pe-----~LD~ALlRpGRF 515 (802)
.++++.||+.|..- .-...++||||-|..+ .|+.+++. ||
T Consensus 76 -------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 76 -------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred -------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 56788888887542 2235689999999765 67777776 66
No 222
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.69 E-value=9.8e-08 Score=108.89 Aligned_cols=203 Identities=23% Similarity=0.307 Sum_probs=118.7
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhhh
Q 003696 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVG 433 (802)
Q Consensus 357 FdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~vG 433 (802)
+.+++|...+..++.+.+..+.. .+..+++.|++||||+++|+++.... +.||+.++|..+.+....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~----------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSR----------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhC----------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 45688888877777665553322 23469999999999999999998764 679999999887443211
Q ss_pred hhHHHHHHHHHH---------------HHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc---------c
Q 003696 434 VGARRVRSLFQA---------------AKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------Q 489 (802)
Q Consensus 434 ~~~k~vr~lF~~---------------Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~---------~ 489 (802)
..+|.. ......+.|||||||.+.. ..+..|+..++.-. .
T Consensus 203 ------~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~----------~~q~~ll~~l~~~~~~~~~~~~~~ 266 (463)
T TIGR01818 203 ------SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL----------DAQTRLLRVLADGEFYRVGGRTPI 266 (463)
T ss_pred ------HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH----------HHHHHHHHHHhcCcEEECCCCcee
Confidence 011110 1112356899999999943 44555665554211 1
Q ss_pred CCCEEEEeecCCCCCCChhhcCCCccc-------eEEEccCCCHHHH----HHHHHHHhccC----CC----CCcccHHH
Q 003696 490 NEGIILMAATNLPDILDPALTRPGRFD-------RHIVVPNPDVRGR----QEILELYLQDK----PL----ADDVDVKA 550 (802)
Q Consensus 490 ~~~VIVIaATN~pe~LD~ALlRpGRFd-------r~I~v~lPd~eeR----~~ILk~~l~~~----~l----~~dvdl~~ 550 (802)
..++.+|++|+.. ++. +...|+|. ..+.+..|...+| ..+++++++.. .. -.+..+..
T Consensus 267 ~~~~rii~~~~~~--l~~-~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 343 (463)
T TIGR01818 267 KVDVRIVAATHQN--LEA-LVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALER 343 (463)
T ss_pred eeeeEEEEeCCCC--HHH-HHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence 1246788888743 221 11223333 1345555555544 44555555332 11 12222444
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003696 551 IARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAK 591 (802)
Q Consensus 551 LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~ 591 (802)
|.+..--.+.++|++++++|+..+ ....|+.+|+...+
T Consensus 344 L~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 344 LKQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 554432235688888888887654 44678888876444
No 223
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.69 E-value=3.8e-08 Score=94.78 Aligned_cols=105 Identities=28% Similarity=0.444 Sum_probs=68.8
Q ss_pred cCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcC---CCeeEeeccchhhhhhhhhHH
Q 003696 361 KGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSEFEEMFVGVGAR 437 (802)
Q Consensus 361 iG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag---~pfi~is~se~~e~~vG~~~k 437 (802)
+|...+.+++++-+..+... ...|||+|+|||||+++|+++....+ .||+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~----------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKS----------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCS----------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhCC----------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 46667777777776655432 23699999999999999999998764 477777776543
Q ss_pred HHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecC
Q 003696 438 RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (802)
Q Consensus 438 ~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN 500 (802)
.++++.+ .+..|||+|+|.+. ...+..|+..++... +.++.+|+++.
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~----------~~~Q~~L~~~l~~~~-~~~~RlI~ss~ 108 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLS----------PEAQRRLLDLLKRQE-RSNVRLIASSS 108 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-----------HHHHHHHHHHHHHCT-TTTSEEEEEEC
T ss_pred --HHHHHHc---CCCEEEECChHHCC----------HHHHHHHHHHHHhcC-CCCeEEEEEeC
Confidence 3344444 45699999999993 455556666665432 34445555555
No 224
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=9.6e-08 Score=105.26 Aligned_cols=133 Identities=19% Similarity=0.305 Sum_probs=94.6
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHhcCC--------C-----------------eeEeeccch---hhh-hhhhhHHH
Q 003696 388 GKLPKGILLTGAPGTGKTLLAKAIAGEAGV--------P-----------------FFYRAGSEF---EEM-FVGVGARR 438 (802)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArALA~eag~--------p-----------------fi~is~se~---~e~-~vG~~~k~ 438 (802)
+++|.++||+||+|+|||++|+++|+.+.+ | |++++...- ... ....+.+.
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~ 97 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDA 97 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHH
Confidence 588999999999999999999999997643 1 222222100 000 00123566
Q ss_pred HHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCc
Q 003696 439 VRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGR 514 (802)
Q Consensus 439 vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGR 514 (802)
+|++.+.+.. ....|++||++|.+ +....|.|+..++... .++.+|.+|+.++.+.+.+.+ |
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L----------d~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S--R 163 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM----------NLQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS--R 163 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC----------CHHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--H
Confidence 7777766653 23459999999999 4577888888888654 345566688888899999887 6
Q ss_pred cceEEEccCCCHHHHHHHHHH
Q 003696 515 FDRHIVVPNPDVRGRQEILEL 535 (802)
Q Consensus 515 Fdr~I~v~lPd~eeR~~ILk~ 535 (802)
+ ..+.|++|+.++..+.|+.
T Consensus 164 c-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHHh
Confidence 6 6788999999888877764
No 225
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.68 E-value=8.3e-08 Score=104.91 Aligned_cols=101 Identities=28% Similarity=0.362 Sum_probs=63.5
Q ss_pred CCcccccCCH-HHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhh
Q 003696 355 KTFKDVKGCD-DAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM 430 (802)
Q Consensus 355 ~tFdDViG~d-eaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~ 430 (802)
.+|+++...+ ..+..+..+..|+.+. .. .+..+|++|+||+|||||+||.|+|+++ |.++.++..++|...
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~---~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~ 198 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAY---PP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE 198 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHh---hc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH
Confidence 4677766443 2223333344444332 11 2245799999999999999999999987 788888888877655
Q ss_pred hhhhh-HHHHHHHHHHHHhcCCcEEEEcchhhh
Q 003696 431 FVGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAV 462 (802)
Q Consensus 431 ~vG~~-~k~vr~lF~~Ar~~aP~ILfIDEIDaL 462 (802)
+.... ...+.+.+...+ ...+|+|||+.+-
T Consensus 199 lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 199 LKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 32211 112233343333 4569999999765
No 226
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.67 E-value=1e-07 Score=101.10 Aligned_cols=131 Identities=19% Similarity=0.235 Sum_probs=78.7
Q ss_pred CCCccccc-CCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhh
Q 003696 354 VKTFKDVK-GCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 429 (802)
Q Consensus 354 ~~tFdDVi-G~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e 429 (802)
..+|++.. +.+..+..+..+..+..+... ...+++|+||||||||+|+.++|.++ +..+++++..++..
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a~~~~~~~~~-------~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKARQYVEEFDG-------NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred CCccccccCCCchHHHHHHHHHHHHHhhcc-------CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence 35777764 334444455555554433211 12489999999999999999999987 78889999888876
Q ss_pred hhhhhh---HHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCC
Q 003696 430 MFVGVG---ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 502 (802)
Q Consensus 430 ~~vG~~---~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~p 502 (802)
.+.... ......++.... ..++|+|||++.... .......+.+++..- + ...-.+|.+||..
T Consensus 141 ~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~-----s~~~~~~l~~Ii~~R--y--~~~~~tiitSNl~ 205 (244)
T PRK07952 141 AMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE-----SRYEKVIINQIVDRR--S--SSKRPTGMLTNSN 205 (244)
T ss_pred HHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-----CHHHHHHHHHHHHHH--H--hCCCCEEEeCCCC
Confidence 543321 111223444433 467999999988632 112344555665432 1 1122344577853
No 227
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.66 E-value=1.6e-07 Score=110.54 Aligned_cols=190 Identities=16% Similarity=0.161 Sum_probs=129.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcC--CCeeEeeccchhhhhhhhh--HHHH--------HHHHHHHHhcCCcEEEEcch
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEFEEMFVGVG--ARRV--------RSLFQAAKKKAPCIIFIDEI 459 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag--~pfi~is~se~~e~~vG~~--~k~v--------r~lF~~Ar~~aP~ILfIDEI 459 (802)
.||+|.|++||||++++++++.-+. .||+.+..+--.+..+|.+ +..+ ..++..|. ..||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 4899999999999999999999874 5888776555444445533 1111 11222222 249999999
Q ss_pred hhhccccccCCcchHHHHHHHHHHhccc-----------ccCCCEEEEeecCCC---CCCChhhcCCCccceEEEccCCC
Q 003696 460 DAVGSTRKQWEGHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLP---DILDPALTRPGRFDRHIVVPNPD 525 (802)
Q Consensus 460 DaLg~~r~~~~~~~~~tLnqLL~eLDg~-----------~~~~~VIVIaATN~p---e~LD~ALlRpGRFdr~I~v~lPd 525 (802)
..+ ...++..|+..|+.- .-..++++|++.|.. ..|.++++. ||+.++.++.|+
T Consensus 103 n~~----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~ 170 (584)
T PRK13406 103 ERL----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLA 170 (584)
T ss_pred ccC----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCC
Confidence 888 467888999888641 123468888874432 358888987 999999999877
Q ss_pred HHHHH-------HHHHH--HhccCCCCCcccHHHHHhcC--CCC-CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003696 526 VRGRQ-------EILEL--YLQDKPLADDVDVKAIARGT--PGF-NGADLANLVNIAAIKAAVDGGEKLTATELEFAKDR 593 (802)
Q Consensus 526 ~eeR~-------~ILk~--~l~~~~l~~dvdl~~LA~~t--~G~-SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~r 593 (802)
..+.. .|.+. .+.+..+ ++..+..++..+ -|. |.+--..+++-|..+|..++++.|+.+|+..|..-
T Consensus 171 ~~~~~~~~~~~~~I~~AR~rl~~v~v-~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~l 249 (584)
T PRK13406 171 LRDAREIPIDADDIAAARARLPAVGP-PPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARL 249 (584)
T ss_pred hHHhcccCCCHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 55421 23322 2222222 222233333222 355 77888889999999999999999999999999988
Q ss_pred Hhcc
Q 003696 594 ILMG 597 (802)
Q Consensus 594 il~g 597 (802)
++..
T Consensus 250 vL~h 253 (584)
T PRK13406 250 VLAP 253 (584)
T ss_pred HHHh
Confidence 7754
No 228
>PRK08181 transposase; Validated
Probab=98.65 E-value=1.4e-07 Score=101.33 Aligned_cols=71 Identities=21% Similarity=0.325 Sum_probs=51.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhhhhh-HHHHHHHHHHHHhcCCcEEEEcchhhhcc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAVGS 464 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~vG~~-~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~ 464 (802)
.+++|+||||||||+||.|++.++ |..+++++..++...+.... .......+... ..+.+|+|||++.+..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK 181 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC
Confidence 589999999999999999999754 78888988888877543211 11223334333 3457999999988743
No 229
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.65 E-value=1.1e-06 Score=94.10 Aligned_cols=92 Identities=13% Similarity=0.104 Sum_probs=67.1
Q ss_pred CCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 003696 502 PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDV-DVKAIARGTPGFNGADLANLVNIAAIKAAVDGGE 580 (802)
Q Consensus 502 pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dv-dl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~ 580 (802)
|..++-.++. |. ..|...+.+.++.++||+..+......-+. .+..+......-|-+=-.+|+..|...+.+++..
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 4566666654 43 366777889999999999999776544222 2444555444456677778999999999999999
Q ss_pred ccCHHHHHHHHHHHhc
Q 003696 581 KLTATELEFAKDRILM 596 (802)
Q Consensus 581 ~It~edle~A~~ril~ 596 (802)
.+..+|++.+..-.+-
T Consensus 416 ~v~~~di~r~y~LFlD 431 (454)
T KOG2680|consen 416 VVEVDDIERVYRLFLD 431 (454)
T ss_pred eeehhHHHHHHHHHhh
Confidence 9999999999875543
No 230
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.62 E-value=1.6e-07 Score=106.35 Aligned_cols=200 Identities=25% Similarity=0.310 Sum_probs=119.5
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhhhhh
Q 003696 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG 435 (802)
Q Consensus 359 DViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~vG~~ 435 (802)
.++|.......+..-+.++.. ....++++|++||||+++|+++.... +.||+.++|..+.+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~----------~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~- 208 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAP----------SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLES- 208 (441)
T ss_pred ceEecCHHHHHHHHHHhhccC----------CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHH-
Confidence 466777665555554443322 23479999999999999999997654 5799999998765432211
Q ss_pred HHHHHHHHHH---------------HHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc---------cCC
Q 003696 436 ARRVRSLFQA---------------AKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNE 491 (802)
Q Consensus 436 ~k~vr~lF~~---------------Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~---------~~~ 491 (802)
.+|.. .....+++|||||||.|. ...+..|+..++.-. ...
T Consensus 209 -----~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~----------~~~q~~l~~~l~~~~~~~~~~~~~~~~ 273 (441)
T PRK10365 209 -----ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS----------PMMQVRLLRAIQEREVQRVGSNQTISV 273 (441)
T ss_pred -----HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCC----------HHHHHHHHHHHccCcEEeCCCCceeee
Confidence 11211 011235699999999994 345556666654321 012
Q ss_pred CEEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHHHHHH----HHHHHhccC----CC----CCcccHHHHH
Q 003696 492 GIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----PL----ADDVDVKAIA 552 (802)
Q Consensus 492 ~VIVIaATN~pe~LD~ALlRpGRFdr-------~I~v~lPd~eeR~~----ILk~~l~~~----~l----~~dvdl~~LA 552 (802)
++.+|++|+.+ +. .+..+|+|.. .+.+..|..++|.+ ++++++.+. .. -.+..+..|.
T Consensus 274 ~~rii~~t~~~--~~-~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 350 (441)
T PRK10365 274 DVRLIAATHRD--LA-AEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLI 350 (441)
T ss_pred ceEEEEeCCCC--HH-HHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHH
Confidence 46678888753 22 2233456643 56777788877754 555555431 11 1222345555
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003696 553 RGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFA 590 (802)
Q Consensus 553 ~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A 590 (802)
...--.+.++|+++++.|+.. .....|+.+++...
T Consensus 351 ~~~wpgN~reL~~~~~~~~~~---~~~~~i~~~~l~~~ 385 (441)
T PRK10365 351 HYDWPGNIRELENAVERAVVL---LTGEYISERELPLA 385 (441)
T ss_pred hCCCCCHHHHHHHHHHHHHHh---CCCCccchHhCchh
Confidence 554233677888888877654 34567888877543
No 231
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.60 E-value=9.1e-07 Score=103.05 Aligned_cols=210 Identities=16% Similarity=0.188 Sum_probs=118.8
Q ss_pred ccccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEee-c
Q 003696 346 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA-G 424 (802)
Q Consensus 346 ~~~~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is-~ 424 (802)
..|.+...+.+.+||+-..+-.++++.++.... .+....+-+||+||||||||++++.+|+++|..+..-. .
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~-------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np 79 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMF-------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINP 79 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHh-------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCC
Confidence 467778888899999998766555555554211 12333457889999999999999999999987666532 2
Q ss_pred cchh------hhhhhhh------HH---HHHHH-HHHHHh-----------cCCcEEEEcchhhhccccccCCcchHHHH
Q 003696 425 SEFE------EMFVGVG------AR---RVRSL-FQAAKK-----------KAPCIIFIDEIDAVGSTRKQWEGHTKKTL 477 (802)
Q Consensus 425 se~~------e~~vG~~------~k---~vr~l-F~~Ar~-----------~aP~ILfIDEIDaLg~~r~~~~~~~~~tL 477 (802)
..+. ..|.+.. .. ...++ +..++. ..+.||+|||+-.+... .. ..+
T Consensus 80 ~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~------~~-~~f 152 (519)
T PF03215_consen 80 VSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR------DT-SRF 152 (519)
T ss_pred CCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch------hH-HHH
Confidence 1110 1111110 01 11111 111111 23569999999876432 11 333
Q ss_pred HHHHHHhcccccCC-CEEEEee-cCC------C--------CCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccC-
Q 003696 478 HQLLVEMDGFEQNE-GIILMAA-TNL------P--------DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK- 540 (802)
Q Consensus 478 nqLL~eLDg~~~~~-~VIVIaA-TN~------p--------e~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~- 540 (802)
..+|...-. .... ++|+|.+ ++. . ..+++.++...++ .+|.|.+-...-..+.|+..+...
T Consensus 153 ~~~L~~~l~-~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~ 230 (519)
T PF03215_consen 153 REALRQYLR-SSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEA 230 (519)
T ss_pred HHHHHHHHH-cCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHh
Confidence 333332211 1223 6666665 111 1 1355666543334 478888777766666666655433
Q ss_pred -------CCCCccc-HHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 003696 541 -------PLADDVD-VKAIARGTPGFNGADLANLVNIAAIKAA 575 (802)
Q Consensus 541 -------~l~~dvd-l~~LA~~t~G~SgaDL~nLvn~Aa~~Aa 575 (802)
......+ ++.|+..+ .+||+.+++.....+.
T Consensus 231 ~~~~~~~~~p~~~~~l~~I~~~s----~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 231 RSSSGKNKVPDKQSVLDSIAESS----NGDIRSAINNLQFWCL 269 (519)
T ss_pred hhhcCCccCCChHHHHHHHHHhc----CchHHHHHHHHHHHhc
Confidence 1112222 66777654 4699999998777775
No 232
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.58 E-value=5.8e-07 Score=91.38 Aligned_cols=164 Identities=26% Similarity=0.311 Sum_probs=86.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhcCC---CeeEeec-cchhh----hh-------------h-----------------
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEAGV---PFFYRAG-SEFEE----MF-------------V----------------- 432 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~eag~---pfi~is~-se~~e----~~-------------v----------------- 432 (802)
...++|+||+|+|||+|++.+.....- ..+++.. ..... .+ .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 357999999999999999999998732 2222221 11100 00 0
Q ss_pred hhhHHHHHHHHHHHHhc-CCcEEEEcchhhhc-cccccCCcchHHHHHHHHHHhcccccCCCE-EEEeecCC--C-C--C
Q 003696 433 GVGARRVRSLFQAAKKK-APCIIFIDEIDAVG-STRKQWEGHTKKTLHQLLVEMDGFEQNEGI-ILMAATNL--P-D--I 504 (802)
Q Consensus 433 G~~~k~vr~lF~~Ar~~-aP~ILfIDEIDaLg-~~r~~~~~~~~~tLnqLL~eLDg~~~~~~V-IVIaATN~--p-e--~ 504 (802)
......+..++....+. ...||+|||+|.+. ... .....+..|...++......++ +|++++.. . + .
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~ 174 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE-----EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLD 174 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT-----TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc-----chHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhc
Confidence 11234455666665553 34899999999996 211 2245555666666553334443 33444431 0 1 1
Q ss_pred CChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCC-C-CCcccHHHHHhcCCCCCHHHH
Q 003696 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP-L-ADDVDVKAIARGTPGFNGADL 563 (802)
Q Consensus 505 LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~-l-~~dvdl~~LA~~t~G~SgaDL 563 (802)
-...+. +|+.. +.+++-+.++..++++..+.... + .++.+++.+...+.|. |+-|
T Consensus 175 ~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~-P~~l 231 (234)
T PF01637_consen 175 DKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGN-PRYL 231 (234)
T ss_dssp TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT--HHHH
T ss_pred ccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCC-HHHH
Confidence 111222 47766 99999999999999999876651 1 2456677777777663 4433
No 233
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.58 E-value=2.1e-07 Score=102.78 Aligned_cols=99 Identities=23% Similarity=0.388 Sum_probs=62.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhhhhh---HHHHHHHHHHHHhcCCcEEEEcchhhhccc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG---ARRVRSLFQAAKKKAPCIIFIDEIDAVGST 465 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~vG~~---~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~ 465 (802)
.+++|+||||||||+||.|+|+++ |..+++++..++...+.... .......+.... ...+|+|||+.....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~- 260 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKI- 260 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCC-
Confidence 689999999999999999999986 77889999888866543211 011111233332 347999999977632
Q ss_pred cccCCcchHHHHHHHHHHhcccccCCCEEEEeecCC
Q 003696 466 RKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 501 (802)
Q Consensus 466 r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~ 501 (802)
.......|+..++....+.. -+|.|||.
T Consensus 261 -------t~~~~~~Lf~iin~R~~~~k-~tIiTSNl 288 (329)
T PRK06835 261 -------TEFSKSELFNLINKRLLRQK-KMIISTNL 288 (329)
T ss_pred -------CHHHHHHHHHHHHHHHHCCC-CEEEECCC
Confidence 12333444444443322222 23446675
No 234
>PF13173 AAA_14: AAA domain
Probab=98.58 E-value=4e-07 Score=86.54 Aligned_cols=69 Identities=30% Similarity=0.323 Sum_probs=48.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcC--CCeeEeeccchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhh
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAV 462 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag--~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaL 462 (802)
+.++|+||+|+|||++++.++.... ..++++++.+......... + +.+.+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999999876 7788888877654321111 1 223333322235689999999998
No 235
>PRK06526 transposase; Provisional
Probab=98.55 E-value=1.6e-07 Score=100.18 Aligned_cols=100 Identities=20% Similarity=0.344 Sum_probs=61.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhhhhh-HHHHHHHHHHHHhcCCcEEEEcchhhhcccc
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 466 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~vG~~-~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r 466 (802)
+.+++|+||||||||+||.+++.++ |..+.+++..++.+...... .......+... ..+.+|+|||++.+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~- 174 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE- 174 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC-
Confidence 4589999999999999999998875 77777777777765542211 11122222222 34679999999987432
Q ss_pred ccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCC
Q 003696 467 KQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 502 (802)
Q Consensus 467 ~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~p 502 (802)
......+.+++.... .+.. +|.+||.+
T Consensus 175 ----~~~~~~L~~li~~r~---~~~s--~IitSn~~ 201 (254)
T PRK06526 175 ----PEAANLFFQLVSSRY---ERAS--LIVTSNKP 201 (254)
T ss_pred ----HHHHHHHHHHHHHHH---hcCC--EEEEcCCC
Confidence 112334445544322 2222 45577764
No 236
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=1.7e-06 Score=97.53 Aligned_cols=202 Identities=23% Similarity=0.259 Sum_probs=128.2
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcC-----CCeeEeeccchhhh---
Q 003696 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-----VPFFYRAGSEFEEM--- 430 (802)
Q Consensus 359 DViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag-----~pfi~is~se~~e~--- 430 (802)
.+.|.+..+..+++++..- +...-+..+.+.|-||||||.+..-+-.... ...++++|.++.+.
T Consensus 151 ~l~gRe~e~~~v~~F~~~h--------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLH--------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred CccchHHHHHHHHHHHHhh--------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 4678777777777766532 2344566899999999999998887755432 23478888764321
Q ss_pred h-----------hhhh-HHHHHHHHHH-HHhc-CCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEE
Q 003696 431 F-----------VGVG-ARRVRSLFQA-AKKK-APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILM 496 (802)
Q Consensus 431 ~-----------vG~~-~k~vr~lF~~-Ar~~-aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVI 496 (802)
| .+.+ .......|.. .... .+-++++||+|.|+.+. +.++..|.. +.. ..+.++++|
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-------~~vLy~lFe-wp~-lp~sr~iLi 293 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-------QTVLYTLFE-WPK-LPNSRIILI 293 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-------cceeeeehh-ccc-CCcceeeee
Confidence 1 1111 1122233332 2333 36799999999997532 233333332 222 346778999
Q ss_pred eecCCCCCCChhhcC----CCccceEEEccCCCHHHHHHHHHHHhccCCCCCc--ccHHHHHhcCCCCCHHHHHH---HH
Q 003696 497 AATNLPDILDPALTR----PGRFDRHIVVPNPDVRGRQEILELYLQDKPLADD--VDVKAIARGTPGFNGADLAN---LV 567 (802)
Q Consensus 497 aATN~pe~LD~ALlR----pGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~d--vdl~~LA~~t~G~SgaDL~n---Lv 567 (802)
|..|..+.=|..|-| .+--...+.|++++.++..+||+..+........ ..++.+|+...|.|| |++. +|
T Consensus 294 GiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv~ 372 (529)
T KOG2227|consen 294 GIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALDVC 372 (529)
T ss_pred eehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHHHH
Confidence 999987765555533 1222348899999999999999999987665533 347788899988887 5554 45
Q ss_pred HHHHHHHHHhC
Q 003696 568 NIAAIKAAVDG 578 (802)
Q Consensus 568 n~Aa~~Aa~~~ 578 (802)
+.|...+....
T Consensus 373 R~aiEI~E~e~ 383 (529)
T KOG2227|consen 373 RRAIEIAEIEK 383 (529)
T ss_pred HHHHHHHHHHH
Confidence 55555554433
No 237
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.50 E-value=5.8e-07 Score=98.27 Aligned_cols=210 Identities=22% Similarity=0.299 Sum_probs=124.5
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhh
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 429 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e 429 (802)
....|+.+++.....+.+.+-...+ .- ..-.+|+.|..||||-++||+..... ..||+.++|..+-+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~------Am----lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKL------AM----LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHh------hc----cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 3456999999887755554433322 11 11249999999999999999986543 68999999988754
Q ss_pred hh-----hhh--hHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcc-c-c-------cCCCE
Q 003696 430 MF-----VGV--GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-F-E-------QNEGI 493 (802)
Q Consensus 430 ~~-----vG~--~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg-~-~-------~~~~V 493 (802)
.. .|. +.+.-..+|+.|... .+|+|||..+. ...+..||..+.. . . -.-.|
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmS----------p~lQaKLLRFL~DGtFRRVGee~Ev~vdV 335 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMS----------PRLQAKLLRFLNDGTFRRVGEDHEVHVDV 335 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcC----------HHHHHHHHHHhcCCceeecCCcceEEEEE
Confidence 31 121 123334678777665 79999998883 3455667766542 1 1 11248
Q ss_pred EEEeecCCCC--CCChhhcCCCccce--EEEccCCCHHHHHH----HHH----HHhccCCCC-CcccH---HHHHhcCCC
Q 003696 494 ILMAATNLPD--ILDPALTRPGRFDR--HIVVPNPDVRGRQE----ILE----LYLQDKPLA-DDVDV---KAIARGTPG 557 (802)
Q Consensus 494 IVIaATN~pe--~LD~ALlRpGRFdr--~I~v~lPd~eeR~~----ILk----~~l~~~~l~-~dvdl---~~LA~~t~G 557 (802)
-|||||..+- ..+..-.|..-|.| +..+..|..++|.. +.+ .+..+.... +..+. ..+.+.---
T Consensus 336 RVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~Wp 415 (511)
T COG3283 336 RVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWP 415 (511)
T ss_pred EEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCC
Confidence 9999998541 22222222222333 66777788777743 333 333443332 33333 333333222
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003696 558 FNGADLANLVNIAAIKAAVDGGEKLTATELE 588 (802)
Q Consensus 558 ~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle 588 (802)
.+.++|.|++-+|+... .+..++.+++.
T Consensus 416 GNVRqL~N~iyRA~s~~---Eg~~l~i~~i~ 443 (511)
T COG3283 416 GNVRQLKNAIYRALTLL---EGYELRIEDIL 443 (511)
T ss_pred ccHHHHHHHHHHHHHHh---ccCccchhhcc
Confidence 35677777777766443 44566776664
No 238
>PRK09183 transposase/IS protein; Provisional
Probab=98.48 E-value=5e-07 Score=96.57 Aligned_cols=72 Identities=29% Similarity=0.424 Sum_probs=50.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhhhh-hHHHHHHHHHHHHhcCCcEEEEcchhhhc
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGV-GARRVRSLFQAAKKKAPCIIFIDEIDAVG 463 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~vG~-~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg 463 (802)
..+++|+||||||||+||.+++.++ |..+.++++.++...+... ....+...|... ...+++++|||++.+.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 3579999999999999999997664 7778888877776443221 112233444443 2456799999998763
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.47 E-value=8.4e-07 Score=94.66 Aligned_cols=71 Identities=27% Similarity=0.436 Sum_probs=50.1
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhhhhhHH-HHHH-HHHHHHhcCCcEEEEcchhhh
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGAR-RVRS-LFQAAKKKAPCIIFIDEIDAV 462 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~vG~~~k-~vr~-lF~~Ar~~aP~ILfIDEIDaL 462 (802)
.+.+++|+||||||||+||-|+++++ |.+++++...++.......-.. .... +.... ....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 35689999999999999999999976 7889999988887653221111 1111 11112 23469999999876
No 240
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=9e-07 Score=107.30 Aligned_cols=128 Identities=27% Similarity=0.349 Sum_probs=94.4
Q ss_pred ccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhh----
Q 003696 358 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM---- 430 (802)
Q Consensus 358 dDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~---- 430 (802)
+.|+|++++...+.+.|..-+.... + .+++-.+||.||.|+|||-||+|+|..+ .-.|+.++.++|.+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~--~--~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLK--D--PNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccC--C--CCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 3589999999999998876443211 0 0356679999999999999999999977 457999999986552
Q ss_pred -----hhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccccc---------CCCEEEE
Q 003696 431 -----FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ---------NEGIILM 496 (802)
Q Consensus 431 -----~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~---------~~~VIVI 496 (802)
|+| ......+.+..+...-+||+|||||.. ....++.|+..+|...- -.++|||
T Consensus 638 gsp~gyvG--~e~gg~LteavrrrP~sVVLfdeIEkA----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~I 705 (898)
T KOG1051|consen 638 GSPPGYVG--KEEGGQLTEAVKRRPYSVVLFEEIEKA----------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIFI 705 (898)
T ss_pred CCCccccc--chhHHHHHHHHhcCCceEEEEechhhc----------CHHHHHHHHHHHhcCccccCCCcEeeccceEEE
Confidence 233 234456777777777799999999987 45677777777775422 1358999
Q ss_pred eecCC
Q 003696 497 AATNL 501 (802)
Q Consensus 497 aATN~ 501 (802)
.|+|.
T Consensus 706 MTsn~ 710 (898)
T KOG1051|consen 706 MTSNV 710 (898)
T ss_pred Eeccc
Confidence 99885
No 241
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=2.1e-06 Score=93.18 Aligned_cols=123 Identities=18% Similarity=0.203 Sum_probs=85.6
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHhcCCCee--------Eeeccchhhhh-hh----hhHHHHHHHHHHHHh----c
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF--------YRAGSEFEEMF-VG----VGARRVRSLFQAAKK----K 449 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi--------~is~se~~e~~-vG----~~~k~vr~lF~~Ar~----~ 449 (802)
.+++|+.+||+||+|+||+.+|.++|..+-+.-- .-+.+++...+ .+ -+.+.+|++.+.+.. .
T Consensus 15 ~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 15 DQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYES 94 (290)
T ss_pred cCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCC
Confidence 5788999999999999999999999997754210 00111211000 01 124456666555443 2
Q ss_pred CCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCC
Q 003696 450 APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNP 524 (802)
Q Consensus 450 aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lP 524 (802)
...|++||++|.+ +..+.|.||..++. +..++++|..|+.++.|.|.+++ |+ ..+.|+++
T Consensus 95 ~~kv~ii~~ad~m----------t~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 95 PYKIYIIHEADRM----------TLDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred CceEEEEechhhc----------CHHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 3359999999999 46789999999995 56677888888889999999887 66 45666654
No 242
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.44 E-value=8.8e-07 Score=83.06 Aligned_cols=98 Identities=22% Similarity=0.332 Sum_probs=61.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhc--------CCCeeEeeccchhh--hhh------------h-hh-HHHHHHHHHHHH
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEA--------GVPFFYRAGSEFEE--MFV------------G-VG-ARRVRSLFQAAK 447 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ea--------g~pfi~is~se~~e--~~v------------G-~~-~k~vr~lF~~Ar 447 (802)
+.++++||||+|||++++.++... +.+++++++..... .+. . .. ......+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 578999999999999999999987 67888887655431 110 0 11 222233333344
Q ss_pred hcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecC
Q 003696 448 KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (802)
Q Consensus 448 ~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN 500 (802)
.....+|+|||+|.+. ....++.|...++ ..+-.++++++.+
T Consensus 85 ~~~~~~lviDe~~~l~---------~~~~l~~l~~l~~--~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF---------SDEFLEFLRSLLN--ESNIKVVLVGTPE 126 (131)
T ss_dssp HCTEEEEEEETTHHHH---------THHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred hcCCeEEEEeChHhcC---------CHHHHHHHHHHHh--CCCCeEEEEEChh
Confidence 4444599999999984 1566666766666 3444566666554
No 243
>PRK06921 hypothetical protein; Provisional
Probab=98.43 E-value=1.4e-06 Score=93.62 Aligned_cols=68 Identities=31% Similarity=0.359 Sum_probs=46.6
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhc----CCCeeEeeccchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhh
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 461 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~ea----g~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDa 461 (802)
..+++|+||||||||+|+.|+|+++ |..+++++..++....... .......+... ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 4689999999999999999999975 6778888876655433211 11122222222 3457999999954
No 244
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=7.6e-06 Score=88.97 Aligned_cols=143 Identities=16% Similarity=0.176 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC-------eeE---------eeccc
Q 003696 363 CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------FFY---------RAGSE 426 (802)
Q Consensus 363 ~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p-------fi~---------is~se 426 (802)
++.+++.|+..+. ..++|.++||+|| +||+++|+++|..+.+. .-. -+.++
T Consensus 7 q~~~~~~L~~~~~-----------~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD 73 (290)
T PRK07276 7 QPKVFQRFQTILE-----------QDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD 73 (290)
T ss_pred HHHHHHHHHHHHH-----------cCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 3445555555554 5688999999996 68999999999866431 100 01122
Q ss_pred hhhhh-hh--hhHHHHHHHHHHHHh----cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeec
Q 003696 427 FEEMF-VG--VGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 499 (802)
Q Consensus 427 ~~e~~-vG--~~~k~vr~lF~~Ar~----~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaAT 499 (802)
+.... .| .....+|++...+.. ....|++||++|.+ .....|.||+.++. +..++++|..|
T Consensus 74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m----------~~~AaNaLLKtLEE--Pp~~t~~iL~t 141 (290)
T PRK07276 74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM----------HVNAANSLLKVIEE--PQSEIYIFLLT 141 (290)
T ss_pred eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc----------CHHHHHHHHHHhcC--CCCCeEEEEEE
Confidence 21100 01 124567776665543 23369999999999 46789999999995 55567788888
Q ss_pred CCCCCCChhhcCCCccceEEEccCCCHHHHHHHHH
Q 003696 500 NLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILE 534 (802)
Q Consensus 500 N~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk 534 (802)
+.++.|-|.+++ |+ .++.|+. +.+...+++.
T Consensus 142 ~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 142 NDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 889999999987 77 5777865 5555555554
No 245
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.38 E-value=3.6e-07 Score=92.39 Aligned_cols=70 Identities=29% Similarity=0.441 Sum_probs=47.8
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhhhhh-HHHHHHHHHHHHhcCCcEEEEcchhhh
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAV 462 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~vG~~-~k~vr~lF~~Ar~~aP~ILfIDEIDaL 462 (802)
..|++|+||||||||+||.|++.++ |.+..+++.+++.+...... .....+.+.... .+.+|+|||+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 4699999999999999999999865 88899999988876543211 112233444433 3469999998654
No 246
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.37 E-value=4.2e-07 Score=105.65 Aligned_cols=180 Identities=28% Similarity=0.382 Sum_probs=109.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHh--cCCCeeEeeccchhhh-----hhhhh--------HHHHHHHHHHHHhcCCcEEEEc
Q 003696 393 GILLTGAPGTGKTLLAKAIAGE--AGVPFFYRAGSEFEEM-----FVGVG--------ARRVRSLFQAAKKKAPCIIFID 457 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~e--ag~pfi~is~se~~e~-----~vG~~--------~k~vr~lF~~Ar~~aP~ILfID 457 (802)
.+|+.|.|||||-.+||++-.. ...||+.++|..+.+. +.|.. .+-.+..+++|.. ..+|+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlFld 414 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLFLD 414 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccHHH
Confidence 5999999999999999999654 4689999999776443 22221 1222233333333 389999
Q ss_pred chhhhccccccCCcchHHHHHHHHHHhc--------ccccCCCEEEEeecCCCCCCChhhcCCCccce-------EEEcc
Q 003696 458 EIDAVGSTRKQWEGHTKKTLHQLLVEMD--------GFEQNEGIILMAATNLPDILDPALTRPGRFDR-------HIVVP 522 (802)
Q Consensus 458 EIDaLg~~r~~~~~~~~~tLnqLL~eLD--------g~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr-------~I~v~ 522 (802)
||..|. -..+..||..+. +-...-.|-||+||+++ |. .|.+-|||.. .+.|.
T Consensus 415 eIgd~p----------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~d--l~-~lv~~g~fredLyyrL~~~~i~ 481 (606)
T COG3284 415 EIGDMP----------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRD--LA-QLVEQGRFREDLYYRLNAFVIT 481 (606)
T ss_pred Hhhhch----------HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcC--HH-HHHHcCCchHHHHHHhcCeeec
Confidence 999883 345555665543 22233358899999953 32 4556688764 45566
Q ss_pred CCCHHHHHH---HHHHHhccCCCC-CcccHHH----HHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003696 523 NPDVRGRQE---ILELYLQDKPLA-DDVDVKA----IARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKD 592 (802)
Q Consensus 523 lPd~eeR~~---ILk~~l~~~~l~-~dvdl~~----LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~ 592 (802)
+|...+|.+ .|.+++.+.... -.++-+. ++-.-+| +.++|.|+++.++..+ +...|...|+...+-
T Consensus 482 lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~---~~g~~~~~dlp~~l~ 555 (606)
T COG3284 482 LPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALS---DGGRIRVSDLPPELL 555 (606)
T ss_pred cCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcC---CCCeeEcccCCHHHH
Confidence 777777654 444444433211 2222222 3334454 6677778877766543 555666666655444
No 247
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.34 E-value=1.7e-06 Score=82.86 Aligned_cols=72 Identities=26% Similarity=0.287 Sum_probs=47.9
Q ss_pred EEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhh----------------------hh--hHHHHHHHHHHH
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV----------------------GV--GARRVRSLFQAA 446 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~v----------------------G~--~~k~vr~lF~~A 446 (802)
++|+||||+|||+++..++..+ +.+.++++......... .. .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 56777776643322110 00 011112234455
Q ss_pred HhcCCcEEEEcchhhhccc
Q 003696 447 KKKAPCIIFIDEIDAVGST 465 (802)
Q Consensus 447 r~~aP~ILfIDEIDaLg~~ 465 (802)
....|.+|+|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6677889999999998643
No 248
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.31 E-value=2.1e-07 Score=102.81 Aligned_cols=211 Identities=25% Similarity=0.249 Sum_probs=113.3
Q ss_pred cccCCHHHHHHHHHHHHHhcCc-hhhhh--cCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccch--------
Q 003696 359 DVKGCDDAKQELVEVVEYLKNP-SKFTR--LGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF-------- 427 (802)
Q Consensus 359 DViG~deaK~eL~eiV~~Lk~p-~~~~~--lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~-------- 427 (802)
+|.|.+.+|..+.= .|-.. .+... ...+-.-++||+|.||||||.|.+.++.-+.. -+++++...
T Consensus 25 ~i~g~~~iK~aill---~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr-~v~~~g~~~s~~gLta~ 100 (331)
T PF00493_consen 25 SIYGHEDIKKAILL---QLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPR-SVYTSGKGSSAAGLTAS 100 (331)
T ss_dssp TTTT-HHHHHHHCC---CCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SS-EEEEECCGSTCCCCCEE
T ss_pred cCcCcHHHHHHHHH---HHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCc-eEEECCCCcccCCccce
Confidence 47888888766521 11111 11000 01223458999999999999999988654432 233333221
Q ss_pred ------hhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccc-----------ccC
Q 003696 428 ------EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF-----------EQN 490 (802)
Q Consensus 428 ------~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~-----------~~~ 490 (802)
...|+-+. ..+-.|. ..|++|||+|.+-. .....|+..|+.- .-+
T Consensus 101 ~~~d~~~~~~~lea-----Galvlad---~GiccIDe~dk~~~----------~~~~~l~eaMEqq~isi~kagi~~~l~ 162 (331)
T PF00493_consen 101 VSRDPVTGEWVLEA-----GALVLAD---GGICCIDEFDKMKE----------DDRDALHEAMEQQTISIAKAGIVTTLN 162 (331)
T ss_dssp ECCCGGTSSECEEE------HHHHCT---TSEEEECTTTT--C----------HHHHHHHHHHHCSCEEECTSSSEEEEE
T ss_pred eccccccceeEEeC-----Cchhccc---Cceeeecccccccc----------hHHHHHHHHHHcCeeccchhhhccccc
Confidence 11111000 1222232 35999999999932 3456677777641 113
Q ss_pred CCEEEEeecCCCC-------------CCChhhcCCCccceEEEc-cCCCHHHHHHHHHHHhccCCCCC------------
Q 003696 491 EGIILMAATNLPD-------------ILDPALTRPGRFDRHIVV-PNPDVRGRQEILELYLQDKPLAD------------ 544 (802)
Q Consensus 491 ~~VIVIaATN~pe-------------~LD~ALlRpGRFdr~I~v-~lPd~eeR~~ILk~~l~~~~l~~------------ 544 (802)
.+.-|+||+|... .+++.|++ |||..+.+ ..|+.+.-..|.++.+.......
T Consensus 163 ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF00493_consen 163 ARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDK 240 (331)
T ss_dssp ---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-
T ss_pred chhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCC
Confidence 3467889999754 47778887 99998765 56776655556555543321110
Q ss_pred ccc------HHHHHh------------------------------cCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003696 545 DVD------VKAIAR------------------------------GTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 588 (802)
Q Consensus 545 dvd------l~~LA~------------------------------~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle 588 (802)
.++ +-..++ .....+.+.|+.+++-|..+|..+-+..|+.+|+.
T Consensus 241 ~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~ 320 (331)
T PF00493_consen 241 PISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVE 320 (331)
T ss_dssp TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHH
T ss_pred ccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHH
Confidence 011 111111 11235677889999999999999999999999999
Q ss_pred HHHHH
Q 003696 589 FAKDR 593 (802)
Q Consensus 589 ~A~~r 593 (802)
.|+.=
T Consensus 321 ~Ai~L 325 (331)
T PF00493_consen 321 EAIRL 325 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 249
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.30 E-value=4.7e-06 Score=89.86 Aligned_cols=133 Identities=23% Similarity=0.379 Sum_probs=72.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCC-C--eeEeeccchhhhhhhhhHHHHHHHHHHH-----------HhcCCcEEEEc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGV-P--FFYRAGSEFEEMFVGVGARRVRSLFQAA-----------KKKAPCIIFID 457 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~-p--fi~is~se~~e~~vG~~~k~vr~lF~~A-----------r~~aP~ILfID 457 (802)
+.+||+||+|||||++++.+-.+..- . ...++++.... ...++.+.+.. ..++.+|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 47999999999999999988776542 2 22333333221 22233222211 11234699999
Q ss_pred chhhhccccccCCcchHHHHHHHHHHh---cccccC--------CCEEEEeecCCCC---CCChhhcCCCccceEEEccC
Q 003696 458 EIDAVGSTRKQWEGHTKKTLHQLLVEM---DGFEQN--------EGIILMAATNLPD---ILDPALTRPGRFDRHIVVPN 523 (802)
Q Consensus 458 EIDaLg~~r~~~~~~~~~tLnqLL~eL---Dg~~~~--------~~VIVIaATN~pe---~LD~ALlRpGRFdr~I~v~l 523 (802)
|+..-.... + ..+...+||+++ .|+... .++.+|||++.+. .+++.++| .| ..+.++.
T Consensus 108 DlN~p~~d~--y---gtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~ 179 (272)
T PF12775_consen 108 DLNMPQPDK--Y---GTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPY 179 (272)
T ss_dssp TTT-S---T--T---S--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE---
T ss_pred ccCCCCCCC--C---CCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecC
Confidence 998653321 1 122223444432 233221 2477888888543 46677776 55 5889999
Q ss_pred CCHHHHHHHHHHHhc
Q 003696 524 PDVRGRQEILELYLQ 538 (802)
Q Consensus 524 Pd~eeR~~ILk~~l~ 538 (802)
|+.+....|+..++.
T Consensus 180 p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 180 PSDESLNTIFSSILQ 194 (272)
T ss_dssp -TCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHh
Confidence 999998888777664
No 250
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.28 E-value=1.6e-05 Score=91.34 Aligned_cols=212 Identities=16% Similarity=0.191 Sum_probs=113.2
Q ss_pred cccccCCCCCCCcccccCCHHHHHHHHHHHHH--hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEe
Q 003696 345 NKEVMPEKNVKTFKDVKGCDDAKQELVEVVEY--LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (802)
Q Consensus 345 ~~~~~~~~~~~tFdDViG~deaK~eL~eiV~~--Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~i 422 (802)
...|.++..+.+.+|++-...=..++++++.. ...+. ++ .+-+||+||+||||||.++.++.++|..++.-
T Consensus 69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~----l~---~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew 141 (634)
T KOG1970|consen 69 FELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPK----LG---SRILLLTGPSGCGKSTTVKVLSKELGYQLIEW 141 (634)
T ss_pred cchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccC----CC---ceEEEEeCCCCCCchhHHHHHHHhhCceeeee
Confidence 34566677777888887654333333333221 01111 12 24688999999999999999999999877654
Q ss_pred ecc-------------chhhhhhhhhHHHHHHHHHHHH------------hcCCcEEEEcchhhhccccccCCcchHHHH
Q 003696 423 AGS-------------EFEEMFVGVGARRVRSLFQAAK------------KKAPCIIFIDEIDAVGSTRKQWEGHTKKTL 477 (802)
Q Consensus 423 s~s-------------e~~e~~vG~~~k~vr~lF~~Ar------------~~aP~ILfIDEIDaLg~~r~~~~~~~~~tL 477 (802)
+.. .+.......--.........+. ...|.+|+|||+=..... +....+
T Consensus 142 ~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~------d~~~~f 215 (634)
T KOG1970|consen 142 SNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR------DDSETF 215 (634)
T ss_pred cCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh------hhHHHH
Confidence 411 1111011111111111222221 134679999999776542 124455
Q ss_pred HHHHHHhcccccCCCEEEEeecCCCCCCChhhcCC------CccceEEEccCCCHHHHHHHHHHHhccCCC-------CC
Q 003696 478 HQLLVEMDGFEQNEGIILMAATNLPDILDPALTRP------GRFDRHIVVPNPDVRGRQEILELYLQDKPL-------AD 544 (802)
Q Consensus 478 nqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRp------GRFdr~I~v~lPd~eeR~~ILk~~l~~~~l-------~~ 544 (802)
..+|.++-....-.-|++|.-++.++..++..++| .|++ +|.|.+-...--++.|+.++..... ..
T Consensus 216 ~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~ 294 (634)
T KOG1970|consen 216 REVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPD 294 (634)
T ss_pred HHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCCcCch
Confidence 55555443322222233333333344444333321 2342 6777766666666666666643221 12
Q ss_pred cccHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 003696 545 DVDVKAIARGTPGFNGADLANLVNIAAIKA 574 (802)
Q Consensus 545 dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~A 574 (802)
...++.|+.. +++||+..++...+.+
T Consensus 295 ~~~v~~i~~~----s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 295 TAEVELICQG----SGGDIRSAINSLQLSS 320 (634)
T ss_pred hHHHHHHHHh----cCccHHHHHhHhhhhc
Confidence 3335555553 5669999999887775
No 251
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.25 E-value=4.3e-06 Score=99.41 Aligned_cols=220 Identities=23% Similarity=0.263 Sum_probs=121.5
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCC--CCCceEEEEccCCCcHHHHHHHHHHhcCCCeeE-eeccchhhhhhh
Q 003696 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGG--KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY-RAGSEFEEMFVG 433 (802)
Q Consensus 357 FdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~--~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~-is~se~~e~~vG 433 (802)
.-.|.|++.+|+.+.- ..+.-..+...-|. +-.-+|||.|.||||||.|.+.+++-+...++. ..++. -+|
T Consensus 285 aPsIyG~e~VKkAilL--qLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~G 358 (682)
T COG1241 285 APSIYGHEDVKKAILL--QLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAG 358 (682)
T ss_pred cccccCcHHHHHHHHH--HhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccC
Confidence 4457788887776632 22222222111111 222579999999999999999999877544332 11211 122
Q ss_pred hhHHHHHHHH--H---HH---HhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccc-----------cCCCEE
Q 003696 434 VGARRVRSLF--Q---AA---KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-----------QNEGII 494 (802)
Q Consensus 434 ~~~k~vr~lF--~---~A---r~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~-----------~~~~VI 494 (802)
.++..+++-+ + .+ -...+.|.+|||+|.+- ....+.+...|+.-. -+.+.-
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~----------~~dr~aihEaMEQQtIsIaKAGI~atLnARcs 428 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN----------EEDRVAIHEAMEQQTISIAKAGITATLNARCS 428 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCC----------hHHHHHHHHHHHhcEeeecccceeeecchhhh
Confidence 2222222211 0 11 01235699999999983 334445555555311 122345
Q ss_pred EEeecCCCC-------------CCChhhcCCCccceEEEcc-CCCHHHHHHHHHHHhccCC-------------------
Q 003696 495 LMAATNLPD-------------ILDPALTRPGRFDRHIVVP-NPDVRGRQEILELYLQDKP------------------- 541 (802)
Q Consensus 495 VIaATN~pe-------------~LD~ALlRpGRFdr~I~v~-lPd~eeR~~ILk~~l~~~~------------------- 541 (802)
|+||+|... .|++.|++ |||..+.+. .||.+.=..|.++.+..+.
T Consensus 429 vLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~ 506 (682)
T COG1241 429 VLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEER 506 (682)
T ss_pred hhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccC
Confidence 778888754 57888888 999976664 5666533333333222111
Q ss_pred ---------------C---CCcccHHHHH-------h--------cCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003696 542 ---------------L---ADDVDVKAIA-------R--------GTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 588 (802)
Q Consensus 542 ---------------l---~~dvdl~~LA-------~--------~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle 588 (802)
. -.+...+.|. + .+-..|.++|+.+++-|-.+|..+-.+.|+.+|++
T Consensus 507 ~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~ 586 (682)
T COG1241 507 DFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVD 586 (682)
T ss_pred cHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 0 0011111110 0 11235677888888888888877777888888888
Q ss_pred HHHHHH
Q 003696 589 FAKDRI 594 (802)
Q Consensus 589 ~A~~ri 594 (802)
+|++-+
T Consensus 587 eAi~lv 592 (682)
T COG1241 587 EAIRLV 592 (682)
T ss_pred HHHHHH
Confidence 877644
No 252
>PF05729 NACHT: NACHT domain
Probab=98.23 E-value=1e-05 Score=78.03 Aligned_cols=141 Identities=16% Similarity=0.271 Sum_probs=74.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcC--------CC-eeEeeccchhhh------------hhhhhHHHHHHHH-HHHHhcC
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAG--------VP-FFYRAGSEFEEM------------FVGVGARRVRSLF-QAAKKKA 450 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag--------~p-fi~is~se~~e~------------~vG~~~k~vr~lF-~~Ar~~a 450 (802)
-++|+|+||+|||++++.++..+. .+ ++++++.+.... ........+...+ .......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999987651 12 233333333221 0001111112211 2233456
Q ss_pred CcEEEEcchhhhcccccc-CCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHH
Q 003696 451 PCIIFIDEIDAVGSTRKQ-WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGR 529 (802)
Q Consensus 451 P~ILfIDEIDaLg~~r~~-~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR 529 (802)
..+|+||.+|.+...... ........+.+++.. ....+.+++|.+.+.....+...+.. ...+.++.-+.+++
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFSEEDI 155 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCCHHHH
Confidence 679999999999653221 000112223333322 01233344443322222222222222 15788889999999
Q ss_pred HHHHHHHhcc
Q 003696 530 QEILELYLQD 539 (802)
Q Consensus 530 ~~ILk~~l~~ 539 (802)
.++++.++++
T Consensus 156 ~~~~~~~f~~ 165 (166)
T PF05729_consen 156 KQYLRKYFSN 165 (166)
T ss_pred HHHHHHHhhc
Confidence 9999998764
No 253
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.22 E-value=1.1e-05 Score=102.46 Aligned_cols=176 Identities=18% Similarity=0.217 Sum_probs=100.1
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCe---eEeecc---chh
Q 003696 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF---FYRAGS---EFE 428 (802)
Q Consensus 355 ~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pf---i~is~s---e~~ 428 (802)
..|++++|.++..++|..++.. .....+-+-|+||+|+||||||+++++.....| ++++.. ...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~ 250 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM 250 (1153)
T ss_pred cccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch
Confidence 3588899999988888776641 222345788999999999999999988764433 111110 000
Q ss_pred hhh-----------hhhhHHHHHH-------------HHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHh
Q 003696 429 EMF-----------VGVGARRVRS-------------LFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEM 484 (802)
Q Consensus 429 e~~-----------vG~~~k~vr~-------------lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eL 484 (802)
..+ .......+.+ ..+..-..++.+|+||++|.. ..+..+....
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~------------~~l~~L~~~~ 318 (1153)
T PLN03210 251 EIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ------------DVLDALAGQT 318 (1153)
T ss_pred hhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH------------HHHHHHHhhC
Confidence 000 0000000111 111112345679999998654 2334444333
Q ss_pred cccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCccc----HHHHHhcCCCCCH
Q 003696 485 DGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVD----VKAIARGTPGFNG 560 (802)
Q Consensus 485 Dg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvd----l~~LA~~t~G~Sg 560 (802)
+.+.. +-.||.||.. ..+.+....++.+.++.|+.++..+++..++-+....+ .+ ...+++.+.|..-
T Consensus 319 ~~~~~--GsrIIiTTrd-----~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~~c~GLPL 390 (1153)
T PLN03210 319 QWFGS--GSRIIVITKD-----KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVALRAGNLPL 390 (1153)
T ss_pred ccCCC--CcEEEEEeCc-----HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHhCCCcH
Confidence 33322 2233446663 33333234678899999999999999998875443222 12 2446677777654
No 254
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=5.1e-05 Score=82.97 Aligned_cols=129 Identities=14% Similarity=0.123 Sum_probs=91.0
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHhcCC-----------C--eeEeeccchhhhhhhhhHHHHHHHHHHHHh-----
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-----------P--FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----- 448 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~eag~-----------p--fi~is~se~~e~~vG~~~k~vr~lF~~Ar~----- 448 (802)
.++.++..||+|+.|.||+.+|++++..+.+ | +..++.. .. ......++++.+....
T Consensus 14 ~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~--~i~vd~Ir~l~~~~~~~~~~~ 88 (299)
T PRK07132 14 QNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DK--DLSKSEFLSAINKLYFSSFVQ 88 (299)
T ss_pred hCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CC--cCCHHHHHHHHHHhccCCccc
Confidence 3567889999999999999999999998732 1 2222200 00 1123456666555432
Q ss_pred cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHH
Q 003696 449 KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRG 528 (802)
Q Consensus 449 ~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~ee 528 (802)
....|++||++|.+ .....|.||..++. +...+++|..|+.++.|-+.+++ |+ ..+.+.+|+.++
T Consensus 89 ~~~KvvII~~~e~m----------~~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~ 153 (299)
T PRK07132 89 SQKKILIIKNIEKT----------SNSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQK 153 (299)
T ss_pred CCceEEEEeccccc----------CHHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHHH
Confidence 24569999999988 35788999999996 44556666666678888888876 65 678999999888
Q ss_pred HHHHHHH
Q 003696 529 RQEILEL 535 (802)
Q Consensus 529 R~~ILk~ 535 (802)
..+.|..
T Consensus 154 l~~~l~~ 160 (299)
T PRK07132 154 ILAKLLS 160 (299)
T ss_pred HHHHHHH
Confidence 8777654
No 255
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.14 E-value=7.8e-05 Score=79.11 Aligned_cols=184 Identities=22% Similarity=0.261 Sum_probs=118.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCC---CeeEeeccch-----hhhhhhh------------hHHHHHHHHHHHHh-cCC
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGV---PFFYRAGSEF-----EEMFVGV------------GARRVRSLFQAAKK-KAP 451 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~---pfi~is~se~-----~e~~vG~------------~~k~vr~lF~~Ar~-~aP 451 (802)
-+.++|+-|+|||++.||+....+. -.++++...+ .+.++.+ ....-+.+.+..++ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 4779999999999999988776542 2344444333 2222111 12223334443333 567
Q ss_pred cEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcC------CCccceEEEccCCC
Q 003696 452 CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTR------PGRFDRHIVVPNPD 525 (802)
Q Consensus 452 ~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlR------pGRFdr~I~v~lPd 525 (802)
.++++||.+.+... .-..+.-|.+.-+++...-+++.||-.. |.+.+++ --|++..|++++.+
T Consensus 133 v~l~vdEah~L~~~-------~le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLNDS-------ALEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhChh-------HHHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEEEecCCcC
Confidence 89999999999431 2233333333333333334577776543 3332221 12777778889999
Q ss_pred HHHHHHHHHHHhccCCCC----CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003696 526 VRGRQEILELYLQDKPLA----DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 588 (802)
Q Consensus 526 ~eeR~~ILk~~l~~~~l~----~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle 588 (802)
.++-...++++++..... .+..+..+...+.| .|+-|.+++..|...|...+.+.|+...++
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 998999999999765333 34446778888887 688999999999999999998888876654
No 256
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.13 E-value=2e-05 Score=91.59 Aligned_cols=221 Identities=20% Similarity=0.245 Sum_probs=125.2
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcC--CCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhh
Q 003696 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG--GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVG 433 (802)
Q Consensus 356 tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG--~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG 433 (802)
-|-.|.|.+.+|.-+.- ..+---.++..-| .+-.-+|+++|.|||||+-+.+++++-+-..++ +++..-. -.|
T Consensus 343 l~PsIyGhe~VK~GilL--~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGkaSS--aAG 417 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILL--SLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKASS--AAG 417 (764)
T ss_pred hCccccchHHHHhhHHH--HHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCcccc--ccc
Confidence 37788999999877632 2222222222212 222357999999999999999999886644332 2221100 011
Q ss_pred hhHHHHHH----HH-HHHH---hcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccc-----------ccCCCEE
Q 003696 434 VGARRVRS----LF-QAAK---KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF-----------EQNEGII 494 (802)
Q Consensus 434 ~~~k~vr~----lF-~~Ar---~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~-----------~~~~~VI 494 (802)
.++..+++ -| -.|- -....|-.|||+|.+.. .-...+++.|+.- .-+.+--
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~----------~dqvAihEAMEQQtISIaKAGv~aTLnARtS 487 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV----------KDQVAIHEAMEQQTISIAKAGVVATLNARTS 487 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccCh----------HhHHHHHHHHHhheehheecceEEeecchhh
Confidence 11111110 00 0010 01234889999999943 2233555666531 0122345
Q ss_pred EEeecCCCC-------------CCChhhcCCCccceE-EEccCCCHHHHHHHHHHHhccCCCCCc-------ccHHH---
Q 003696 495 LMAATNLPD-------------ILDPALTRPGRFDRH-IVVPNPDVRGRQEILELYLQDKPLADD-------VDVKA--- 550 (802)
Q Consensus 495 VIaATN~pe-------------~LD~ALlRpGRFdr~-I~v~lPd~eeR~~ILk~~l~~~~l~~d-------vdl~~--- 550 (802)
||||+|... .+++++++ |||.. |-++.|++..=..|-++.+.....-++ ...+.
T Consensus 488 IlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrk 565 (764)
T KOG0480|consen 488 ILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRK 565 (764)
T ss_pred hhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHH
Confidence 788888653 46788887 99984 455778877666666665543211110 00000
Q ss_pred -------------------HH-----------h----cCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003696 551 -------------------IA-----------R----GTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDR 593 (802)
Q Consensus 551 -------------------LA-----------~----~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~r 593 (802)
|. . .+-+.|.++|+.|++.+-.+|..+-.+.||.+|+++|++-
T Consensus 566 Yi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eL 642 (764)
T KOG0480|consen 566 YIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVEL 642 (764)
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHH
Confidence 00 0 1224667888888888888887777788888888887764
No 257
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.12 E-value=3.4e-05 Score=82.11 Aligned_cols=172 Identities=19% Similarity=0.256 Sum_probs=89.1
Q ss_pred HHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHh--cCCCe---eEeeccc------hhhhh---hhh
Q 003696 369 ELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE--AGVPF---FYRAGSE------FEEMF---VGV 434 (802)
Q Consensus 369 eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~e--ag~pf---i~is~se------~~e~~---vG~ 434 (802)
++.++.+.|.... ...+-|.|+|++|+|||+||+.+++. ....| +.++.+. +.... .+.
T Consensus 4 ~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 4 EIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 4555555554421 33457999999999999999999987 33222 2232221 11110 010
Q ss_pred ---------hHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCC
Q 003696 435 ---------GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (802)
Q Consensus 435 ---------~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~L 505 (802)
......+.+...-...+++|++|+++... .+..+...+.... .+..||.||......
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~------------~~~~l~~~~~~~~--~~~kilvTTR~~~v~ 142 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE------------DLEELREPLPSFS--SGSKILVTTRDRSVA 142 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH------------HH-------HCHH--SS-EEEEEESCGGGG
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc------------ccccccccccccc--ccccccccccccccc
Confidence 11222233333334458999999987661 2233333222222 233445566643221
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCC----CCCcccHHHHHhcCCCCCHHHHHHH
Q 003696 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP----LADDVDVKAIARGTPGFNGADLANL 566 (802)
Q Consensus 506 D~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~----l~~dvdl~~LA~~t~G~SgaDL~nL 566 (802)
.... .-+..+.++..+.++-.++|+.+..... ...+.....|++.+.|. |-.|.-+
T Consensus 143 -~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 143 -GSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp -TTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred -cccc---ccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 1111 1156899999999999999999875443 11122357888888764 5445444
No 258
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.08 E-value=2.1e-05 Score=80.51 Aligned_cols=112 Identities=13% Similarity=0.221 Sum_probs=64.6
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhh-hhhh----------------------hHHHHHHH
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-FVGV----------------------GARRVRSL 442 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~-~vG~----------------------~~k~vr~l 442 (802)
+...-++++||||+|||+++..++.+. +.+.++++..++... +... ....+..+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l 89 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKT 89 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHH
Confidence 334558899999999999999988643 667888887653111 1000 01113334
Q ss_pred HHHHHhcCCcEEEEcchhhhccccccCCc-chHHHHHHHHHHhcccccCCCEEEEeecC
Q 003696 443 FQAAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (802)
Q Consensus 443 F~~Ar~~aP~ILfIDEIDaLg~~r~~~~~-~~~~tLnqLL~eLDg~~~~~~VIVIaATN 500 (802)
...+....|++|+||-|.++......... ...+.+..++..|..+....++.+|.+..
T Consensus 90 ~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 90 SKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 44455557899999999998532111111 11223334444444444456666666544
No 259
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=2.8e-05 Score=83.12 Aligned_cols=121 Identities=13% Similarity=0.084 Sum_probs=82.8
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhcCCC-----ee---------Eeeccchhhhhh---hhhHHHHHHHHHHHHh---
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVP-----FF---------YRAGSEFEEMFV---GVGARRVRSLFQAAKK--- 448 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~eag~p-----fi---------~is~se~~e~~v---G~~~k~vr~lF~~Ar~--- 448 (802)
.+|+.+||+||+|+||..+|.++|..+-+. .- .-+.+|+.-.+. .-+.+.+|++-+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 467899999999999999999999876331 10 001111111000 1233455555544321
Q ss_pred --cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCC
Q 003696 449 --KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNP 524 (802)
Q Consensus 449 --~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lP 524 (802)
....|++||++|.+ ...+.|.||..++. +..++++|..|+.++.|.+.+++ |+. .+.++.+
T Consensus 85 e~~~~KV~II~~ae~m----------~~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL----------NKQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhh----------CHHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeecCCh
Confidence 23469999999999 46789999999994 66778888889999999999987 763 4566665
No 260
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.04 E-value=6.6e-05 Score=88.00 Aligned_cols=127 Identities=29% Similarity=0.346 Sum_probs=70.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhhhhHH-----HHHHHHHHHH---hcCCcEEEEcchhhhc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGAR-----RVRSLFQAAK---KKAPCIIFIDEIDAVG 463 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG~~~k-----~vr~lF~~Ar---~~aP~ILfIDEIDaLg 463 (802)
-+|||+|.||||||.+.+.+++-+..-. |.++-. +.-+|..+- .-+++.-+.- .....|-+|||+|.|.
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~-yTSGkG--sSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~ 539 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGV-YTSGKG--SSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMS 539 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcce-eecCCc--cchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhh
Confidence 4799999999999999999998764322 222210 001111110 0011111110 0123488999999993
Q ss_pred cccccCCcchHHHHHHHHHHhcc---------c--ccCCCEEEEeecCCCC-------------CCChhhcCCCccceEE
Q 003696 464 STRKQWEGHTKKTLHQLLVEMDG---------F--EQNEGIILMAATNLPD-------------ILDPALTRPGRFDRHI 519 (802)
Q Consensus 464 ~~r~~~~~~~~~tLnqLL~eLDg---------~--~~~~~VIVIaATN~pe-------------~LD~ALlRpGRFdr~I 519 (802)
. .+.+-|++.|+. + .-+.+.-|||+.|... .|+|.|++ |||.++
T Consensus 540 d----------StrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIy 607 (804)
T KOG0478|consen 540 D----------STRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIF 607 (804)
T ss_pred H----------HHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEE
Confidence 2 233333333332 1 1133456788888432 57899998 999865
Q ss_pred -EccCCCHHHHHHHH
Q 003696 520 -VVPNPDVRGRQEIL 533 (802)
Q Consensus 520 -~v~lPd~eeR~~IL 533 (802)
-++.||+..=+.|-
T Consensus 608 lllD~~DE~~Dr~La 622 (804)
T KOG0478|consen 608 LLLDKPDERSDRRLA 622 (804)
T ss_pred EEecCcchhHHHHHH
Confidence 45678776333333
No 261
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.03 E-value=2.8e-05 Score=87.06 Aligned_cols=140 Identities=23% Similarity=0.273 Sum_probs=79.7
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHhcCCC-eeEeeccchhhhhhhh------hHHHHHHHHHHHHhcCCcEEEEcchh
Q 003696 388 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-FFYRAGSEFEEMFVGV------GARRVRSLFQAAKKKAPCIIFIDEID 460 (802)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArALA~eag~p-fi~is~se~~e~~vG~------~~k~vr~lF~~Ar~~aP~ILfIDEID 460 (802)
...|+|++||||+|+|||+|.-.+...+... =..+...+|....... ...-+..+-+... ....+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEeeee
Confidence 4578999999999999999999998877541 1111112222110000 0111122222222 222499999997
Q ss_pred hhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCC-CCCCCh-hhcCCCccceEEEccCCCHHHHHHHHHHHhc
Q 003696 461 AVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL-PDILDP-ALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 538 (802)
Q Consensus 461 aLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~-pe~LD~-ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~ 538 (802)
.- +-.....+..|+..+= ..++++|+|+|+ |+.|-+ .+.| .|| .| -.++|+.++.
T Consensus 138 V~-------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~~gl~r-~~F-----lp------~I~~l~~~~~ 194 (362)
T PF03969_consen 138 VT-------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDLYKNGLQR-ERF-----LP------FIDLLKRRCD 194 (362)
T ss_pred cc-------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHcCCcccH-HHH-----HH------HHHHHHhceE
Confidence 54 1113456666776653 468899999997 344432 2222 233 11 2467777777
Q ss_pred cCCCCCcccHHHH
Q 003696 539 DKPLADDVDVKAI 551 (802)
Q Consensus 539 ~~~l~~dvdl~~L 551 (802)
-..+..+.|+...
T Consensus 195 vv~ld~~~DyR~~ 207 (362)
T PF03969_consen 195 VVELDGGVDYRRR 207 (362)
T ss_pred EEEecCCCchhhh
Confidence 7777777776553
No 262
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.98 E-value=6.7e-05 Score=79.20 Aligned_cols=125 Identities=21% Similarity=0.220 Sum_probs=73.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG 471 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~ 471 (802)
.|..++||.|||||.+++++|..+|.+++..+|++-.+ .+.+..+|.-+... .+-+++||++.+-.
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~------- 98 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSE------- 98 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSH-------
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhH-------
Confidence 46789999999999999999999999999999988655 34566777665553 36999999999832
Q ss_pred chHHHHHHHHHH----hccc-----------ccCCCEEEEeecCC----CCCCChhhcCCCccceEEEccCCCHHHHHHH
Q 003696 472 HTKKTLHQLLVE----MDGF-----------EQNEGIILMAATNL----PDILDPALTRPGRFDRHIVVPNPDVRGRQEI 532 (802)
Q Consensus 472 ~~~~tLnqLL~e----LDg~-----------~~~~~VIVIaATN~----pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~I 532 (802)
..-.++.+.+.. +..- .-+...-++.|.|. ...||+.|+. +-|.|.+..||.....++
T Consensus 99 ~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 99 EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSLIAEI 175 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHHHHHH
Confidence 112222222222 1110 01112334445553 3478888875 448899999998766665
Q ss_pred H
Q 003696 533 L 533 (802)
Q Consensus 533 L 533 (802)
+
T Consensus 176 ~ 176 (231)
T PF12774_consen 176 L 176 (231)
T ss_dssp H
T ss_pred H
Confidence 4
No 263
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.95 E-value=6.8e-05 Score=74.72 Aligned_cols=71 Identities=28% Similarity=0.358 Sum_probs=46.1
Q ss_pred EEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhh------hh-----------------------hH-----
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------GV-----------------------GA----- 436 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~v------G~-----------------------~~----- 436 (802)
+|++||||||||+++..++.+. |.++++++..+-.+.+. |. +.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999886643 67777776543221100 00 00
Q ss_pred HHHHHHHHHHHhcCCcEEEEcchhhhcc
Q 003696 437 RRVRSLFQAAKKKAPCIIFIDEIDAVGS 464 (802)
Q Consensus 437 k~vr~lF~~Ar~~aP~ILfIDEIDaLg~ 464 (802)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 0123344444567799999999998854
No 264
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.88 E-value=6.3e-05 Score=86.56 Aligned_cols=76 Identities=24% Similarity=0.430 Sum_probs=54.8
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhh------hh--------hHHHHHHHHHHHHhcCC
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------GV--------GARRVRSLFQAAKKKAP 451 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~v------G~--------~~k~vr~lF~~Ar~~aP 451 (802)
....-+||+||||+|||+|+..+|... +.+.+|++..+-.+... |. ....+..+++..+...|
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~ 157 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKP 157 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCC
Confidence 333458899999999999999998765 67888888765433221 10 11234566666777789
Q ss_pred cEEEEcchhhhcc
Q 003696 452 CIIFIDEIDAVGS 464 (802)
Q Consensus 452 ~ILfIDEIDaLg~ 464 (802)
.+|+||++..+..
T Consensus 158 ~lVVIDSIq~l~~ 170 (446)
T PRK11823 158 DLVVIDSIQTMYS 170 (446)
T ss_pred CEEEEechhhhcc
Confidence 9999999999854
No 265
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.87 E-value=2.1e-05 Score=77.68 Aligned_cols=59 Identities=22% Similarity=0.366 Sum_probs=34.6
Q ss_pred ccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC---eeEeeccch
Q 003696 360 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---FFYRAGSEF 427 (802)
Q Consensus 360 ViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p---fi~is~se~ 427 (802)
++|.++..++|...+. .. ....++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AA--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GT--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HH--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4777777666655553 11 23345789999999999999999997765332 666666554
No 266
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.83 E-value=8.1e-05 Score=83.74 Aligned_cols=76 Identities=28% Similarity=0.450 Sum_probs=53.5
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhh------hh--------hHHHHHHHHHHHHhcCC
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------GV--------GARRVRSLFQAAKKKAP 451 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~v------G~--------~~k~vr~lF~~Ar~~aP 451 (802)
....-++|+||||+|||+|+..+|... +.+.+|+++.+-.+... |. ....+..+++.+....|
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~ 159 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKP 159 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCC
Confidence 333458999999999999999998754 46788887754322211 10 11234566666777889
Q ss_pred cEEEEcchhhhcc
Q 003696 452 CIIFIDEIDAVGS 464 (802)
Q Consensus 452 ~ILfIDEIDaLg~ 464 (802)
.+|+||+|..+..
T Consensus 160 ~lVVIDSIq~l~~ 172 (372)
T cd01121 160 DLVIIDSIQTVYS 172 (372)
T ss_pred cEEEEcchHHhhc
Confidence 9999999999854
No 267
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.81 E-value=0.0002 Score=81.33 Aligned_cols=92 Identities=13% Similarity=0.134 Sum_probs=52.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhc----CCCeeEeeccchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 467 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ea----g~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~ 467 (802)
.++++.||+|||||+++.+++... | -+++...+.... .. ..+. .-....+|+|||+..+.-.
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L----~~---~~lg--~v~~~DlLI~DEvgylp~~-- 275 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI----ST---RQIG--LVGRWDVVAFDEVATLKFA-- 275 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH----HH---HHHh--hhccCCEEEEEcCCCCcCC--
Confidence 479999999999999999997762 3 222222222111 11 1111 1134579999999987432
Q ss_pred cCCcchHHHHHHHHHHhccc---------ccCCCEEEEeecCC
Q 003696 468 QWEGHTKKTLHQLLVEMDGF---------EQNEGIILMAATNL 501 (802)
Q Consensus 468 ~~~~~~~~tLnqLL~eLDg~---------~~~~~VIVIaATN~ 501 (802)
..+..++.|...|+.- ..+..++++|-+|.
T Consensus 276 ----~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 276 ----KPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred ----chHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 1233444454445431 22345777776664
No 268
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.80 E-value=0.00017 Score=80.46 Aligned_cols=157 Identities=22% Similarity=0.264 Sum_probs=89.9
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHhcCCCee---EeeccchhhhhhhhhHHHHHHHHHHH------------------
Q 003696 388 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF---YRAGSEFEEMFVGVGARRVRSLFQAA------------------ 446 (802)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi---~is~se~~e~~vG~~~k~vr~lF~~A------------------ 446 (802)
..+|+|++|||.-|||||+|.-.+-..+-. .. .+...+| +-...+++.++-.+-
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~-i~rkqRvHFh~f----M~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~ 185 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPP-IWRKQRVHFHGF----MLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPV 185 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCc-hhhhhhhhHHHH----HHHHHHHHHHHHHhccccCccccccccCCccHH
Confidence 456999999999999999999887654321 00 0001111 111112211111110
Q ss_pred ----HhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCC-CCCCChhhcCCCccceEEEc
Q 003696 447 ----KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL-PDILDPALTRPGRFDRHIVV 521 (802)
Q Consensus 447 ----r~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~-pe~LD~ALlRpGRFdr~I~v 521 (802)
-...-++|++||+..-- -...-.|+.|...+- +.||+++||+|+ |+.|-..= +.|...+
T Consensus 186 vA~eIa~ea~lLCFDEfQVTD-------VADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknG-----lQR~~F~ 249 (467)
T KOG2383|consen 186 VADEIAEEAILLCFDEFQVTD-------VADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNG-----LQRENFI 249 (467)
T ss_pred HHHHHhhhceeeeechhhhhh-------HHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcc-----hhhhhhh
Confidence 00113699999986431 012345666666553 358999999998 56554322 2223333
Q ss_pred cCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCC---CCCH-HHHHHHHHHHH
Q 003696 522 PNPDVRGRQEILELYLQDKPLADDVDVKAIARGTP---GFNG-ADLANLVNIAA 571 (802)
Q Consensus 522 ~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~---G~Sg-aDL~nLvn~Aa 571 (802)
| -..+|+++++-..+.+.+|+...++... .|.+ .|+..++++-.
T Consensus 250 P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 250 P------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred h------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 3 3578999998888889999985444322 1333 37777777655
No 269
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.79 E-value=3.7e-05 Score=94.09 Aligned_cols=206 Identities=17% Similarity=0.213 Sum_probs=122.5
Q ss_pred CCCCCCCcccccCCHHHHHHHHHHHHHhcCc--hhhhhcCCCCC-c-eEEEEccCCCcHHHHHHHHHHhcCCCeeEeecc
Q 003696 350 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNP--SKFTRLGGKLP-K-GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 425 (802)
Q Consensus 350 ~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p--~~~~~lG~~~P-k-gVLL~GPPGTGKT~LArALA~eag~pfi~is~s 425 (802)
.++......++.|.......+.+.....+++ ..|...+...- + .+|++||||+|||+.+.++|.+.|..++..+.+
T Consensus 312 ~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas 391 (871)
T KOG1968|consen 312 EKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNAS 391 (871)
T ss_pred cccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcc
Confidence 3444455577777766555554444433332 12222111111 2 369999999999999999999999999999988
Q ss_pred chhhhhhhh-------hHHHHHHHH---HHHHh-cCCc-EEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCE
Q 003696 426 EFEEMFVGV-------GARRVRSLF---QAAKK-KAPC-IIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGI 493 (802)
Q Consensus 426 e~~e~~vG~-------~~k~vr~lF---~~Ar~-~aP~-ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~V 493 (802)
+....+... +...+...| ..... .... ||++||+|.+.+. +. ..-..+.++.. ...+
T Consensus 392 ~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~-dR---g~v~~l~~l~~-------ks~~ 460 (871)
T KOG1968|consen 392 DVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE-DR---GGVSKLSSLCK-------KSSR 460 (871)
T ss_pred ccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch-hh---hhHHHHHHHHH-------hccC
Confidence 765432211 112222223 00001 1222 9999999999551 10 01223334433 2334
Q ss_pred EEEeecCCCCCCCh-hhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHH
Q 003696 494 ILMAATNLPDILDP-ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAA 571 (802)
Q Consensus 494 IVIaATN~pe~LD~-ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa 571 (802)
-+|+++|....... ++. |-+..++|+.|+...+..-+..++...... .+-.++.+.+.+ ++||++.+++-.
T Consensus 461 Piv~~cndr~~p~sr~~~---~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq 533 (871)
T KOG1968|consen 461 PLVCTCNDRNLPKSRALS---RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQLQ 533 (871)
T ss_pred CeEEEecCCCCccccchh---hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHHHh
Confidence 56667775444433 232 444678999999999998888777654433 444577787754 779999888776
Q ss_pred HH
Q 003696 572 IK 573 (802)
Q Consensus 572 ~~ 573 (802)
..
T Consensus 534 ~~ 535 (871)
T KOG1968|consen 534 FW 535 (871)
T ss_pred hh
Confidence 65
No 270
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.79 E-value=0.00016 Score=72.09 Aligned_cols=27 Identities=44% Similarity=0.661 Sum_probs=23.6
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhc
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~ea 415 (802)
+.+.-+.++|+||+||||++.-++..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 345679999999999999999999866
No 271
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.76 E-value=7.1e-05 Score=69.31 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=20.6
Q ss_pred EEEEccCCCcHHHHHHHHHHhcC
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEAG 416 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~eag 416 (802)
|.|+||||+|||++|+.+|..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988764
No 272
>PHA00729 NTP-binding motif containing protein
Probab=97.75 E-value=5.7e-05 Score=79.35 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=22.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcC
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAG 416 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag 416 (802)
.++|+|+||||||++|.+++.+++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999875
No 273
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.73 E-value=0.00023 Score=73.33 Aligned_cols=35 Identities=34% Similarity=0.393 Sum_probs=28.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeecc
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 425 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~s 425 (802)
..-++++||||+|||+++..+|.+. +.+.++++..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3448999999999999999998765 5677777654
No 274
>PRK08118 topology modulation protein; Reviewed
Probab=97.71 E-value=0.00013 Score=73.16 Aligned_cols=101 Identities=21% Similarity=0.270 Sum_probs=63.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcc
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH 472 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~ 472 (802)
.|+++||||+||||+|+.|+..++.|++.++.--+...+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~-------------------------------------- 44 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGV-------------------------------------- 44 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCC--------------------------------------
Confidence 589999999999999999999999998876532111000000
Q ss_pred hHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc
Q 003696 473 TKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 539 (802)
Q Consensus 473 ~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~ 539 (802)
.......++..+- ...+.|+ -.|.+..++..+. ++|..|.+..|...-...+++.+++.
T Consensus 45 ~~~~~~~~~~~~~---~~~~wVi--dG~~~~~~~~~l~---~~d~vi~Ld~p~~~~~~R~~~R~~~~ 103 (167)
T PRK08118 45 PKEEQITVQNELV---KEDEWII--DGNYGGTMDIRLN---AADTIIFLDIPRTICLYRAFKRRVQY 103 (167)
T ss_pred CHHHHHHHHHHHh---cCCCEEE--eCCcchHHHHHHH---hCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 0111112222211 1233333 4455555665543 58999999999888888888887753
No 275
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.70 E-value=0.00018 Score=74.70 Aligned_cols=112 Identities=18% Similarity=0.254 Sum_probs=61.5
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhh-hh---hhh-------------------hHHHHHH
Q 003696 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE-MF---VGV-------------------GARRVRS 441 (802)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e-~~---vG~-------------------~~k~vr~ 441 (802)
.+...-++++||||+|||+++..+|.+. +.+.++++...+.. .+ ... ....++.
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 99 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRK 99 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHH
Confidence 3344568999999999999999998744 77888888763211 11 000 0011122
Q ss_pred HHHHHHhcCCcEEEEcchhhhcccc--ccCC-cchHHHHHHHHHHhcccccCCCEEEEeecC
Q 003696 442 LFQAAKKKAPCIIFIDEIDAVGSTR--KQWE-GHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (802)
Q Consensus 442 lF~~Ar~~aP~ILfIDEIDaLg~~r--~~~~-~~~~~tLnqLL~eLDg~~~~~~VIVIaATN 500 (802)
+....+ ..+++|+||-+.++.... +... ....+.+.+++..|..+....++.+|.+..
T Consensus 100 ~~~~~~-~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq 160 (225)
T PRK09361 100 AEKLAK-ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ 160 (225)
T ss_pred HHHHHH-hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 222222 578899999999885431 1011 111233444444443333445556655443
No 276
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.70 E-value=0.00011 Score=76.93 Aligned_cols=74 Identities=23% Similarity=0.242 Sum_probs=41.9
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccc----------hhhhhhhhhHHHHHHHHHHHHh--cCCcEEEE
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE----------FEEMFVGVGARRVRSLFQAAKK--KAPCIIFI 456 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se----------~~e~~vG~~~k~vr~lF~~Ar~--~aP~ILfI 456 (802)
+.|.-+||||+||+|||++|+.+++. ..++..+.+. ....-.......+.+.+..+.. ....+|+|
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVI 87 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVI 87 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEE
Confidence 34677999999999999999999732 1222222211 0000000111233333333332 34679999
Q ss_pred cchhhhcc
Q 003696 457 DEIDAVGS 464 (802)
Q Consensus 457 DEIDaLg~ 464 (802)
|.|+.+..
T Consensus 88 DsI~~l~~ 95 (220)
T TIGR01618 88 DNISALQN 95 (220)
T ss_pred ecHHHHHH
Confidence 99999843
No 277
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.66 E-value=0.0004 Score=72.61 Aligned_cols=40 Identities=28% Similarity=0.451 Sum_probs=30.8
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHh---cCCCeeEeeccc
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGSE 426 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~e---ag~pfi~is~se 426 (802)
|.+....++++||||||||+++..++.+ .|.+.++++..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 4455567999999999999999999764 367777776543
No 278
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.64 E-value=0.00019 Score=81.73 Aligned_cols=221 Identities=21% Similarity=0.249 Sum_probs=120.7
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcC--CCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEe-eccchhhhhhhhh
Q 003696 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLG--GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR-AGSEFEEMFVGVG 435 (802)
Q Consensus 359 DViG~deaK~eL~eiV~~Lk~p~~~~~lG--~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~i-s~se~~e~~vG~~ 435 (802)
+|.|.+++|+.|.-++-- -+.+-..-| ++-.-+|+|.|.||+-|+-|.+.+.+-+-...+.. .+|+ -+|.+
T Consensus 343 EIyGheDVKKaLLLlLVG--gvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGLT 416 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVG--GVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGLT 416 (721)
T ss_pred hhccchHHHHHHHHHhhC--CCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----ccccc
Confidence 588999999998654432 122211112 23335799999999999999999988764443322 1111 23333
Q ss_pred HHHHHHHHHH-------HH-hcCCcEEEEcchhhhccccccCCcchHHHHHHHHHH------hccc--ccCCCEEEEeec
Q 003696 436 ARRVRSLFQA-------AK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE------MDGF--EQNEGIILMAAT 499 (802)
Q Consensus 436 ~k~vr~lF~~-------Ar-~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~e------LDg~--~~~~~VIVIaAT 499 (802)
+..+++-... |- -....|-+|||+|.+... .+-.+....++ -.|+ .-|.+.-|+||.
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~-------DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAA 489 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES-------DRTAIHEVMEQQTISIAKAGINTTLNARTSILAAA 489 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh-------hhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhc
Confidence 4333321100 00 011348899999999542 11222222111 0111 113345677888
Q ss_pred CCCC-------------CCChhhcCCCccceEEE-ccCCCHHHHHHHHHHHh----ccCCCC---CcccHHH------HH
Q 003696 500 NLPD-------------ILDPALTRPGRFDRHIV-VPNPDVRGRQEILELYL----QDKPLA---DDVDVKA------IA 552 (802)
Q Consensus 500 N~pe-------------~LD~ALlRpGRFdr~I~-v~lPd~eeR~~ILk~~l----~~~~l~---~dvdl~~------LA 552 (802)
|... .|+.||++ |||...- ...||.+.=..+.+|.. ...... ..++.+. ++
T Consensus 490 NPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~a 567 (721)
T KOG0482|consen 490 NPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLA 567 (721)
T ss_pred CccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHH
Confidence 8532 68899998 9997443 35677665555555432 211111 1122111 11
Q ss_pred hcCC-----------------------------CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003696 553 RGTP-----------------------------GFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 594 (802)
Q Consensus 553 ~~t~-----------------------------G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A~~ri 594 (802)
+... ..|++-|-.+++.+..+|..+-.+.|..+|+++|+.-.
T Consensus 568 k~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 568 KRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 1111 23566777777777777777777777777777777644
No 279
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.64 E-value=0.00029 Score=77.81 Aligned_cols=109 Identities=18% Similarity=0.188 Sum_probs=65.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhh-h---------------hhhhHHHHHHHHHHHHhcCCc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-F---------------VGVGARRVRSLFQAAKKKAPC 452 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~-~---------------vG~~~k~vr~lF~~Ar~~aP~ 452 (802)
+-++++||||||||+||..++.++ |.+.++++.....+. + ....+..+..+....+...++
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~ 135 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVD 135 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCc
Confidence 458899999999999988876544 677777776442211 0 011122233333334567789
Q ss_pred EEEEcchhhhccccccC---C----cchHHHHHHHHHHhcccccCCCEEEEeecC
Q 003696 453 IIFIDEIDAVGSTRKQW---E----GHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (802)
Q Consensus 453 ILfIDEIDaLg~~r~~~---~----~~~~~tLnqLL~eLDg~~~~~~VIVIaATN 500 (802)
+|+||-+.++..+..-. . +...+.+++.|..|.+.-...++.+|.+..
T Consensus 136 lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 136 IIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred EEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 99999999987532111 0 111234456666666655566666666543
No 280
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.62 E-value=0.00069 Score=76.98 Aligned_cols=135 Identities=19% Similarity=0.206 Sum_probs=79.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcc
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH 472 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~ 472 (802)
-++++||.+||||++++.+.....-.+++++..+........ ......+..+.....+.||||||+.+-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~~-------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVPD-------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCchh--------
Confidence 799999999999999988888775556777666654332111 1112222222222447999999998822
Q ss_pred hHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHH-------------HHHHHhcc
Q 003696 473 TKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQE-------------ILELYLQD 539 (802)
Q Consensus 473 ~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~-------------ILk~~l~~ 539 (802)
-...+..+. |.... .+++.+++...-....+-.-+||. ..+.+.+-+..+... .++.|+..
T Consensus 109 W~~~lk~l~---d~~~~--~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~~Yl~~ 182 (398)
T COG1373 109 WERALKYLY---DRGNL--DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKLELLFEKYLET 182 (398)
T ss_pred HHHHHHHHH---ccccc--eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 233444443 32211 445444433322333333446895 577777888888864 46666655
Q ss_pred CCCC
Q 003696 540 KPLA 543 (802)
Q Consensus 540 ~~l~ 543 (802)
.+.+
T Consensus 183 GGfP 186 (398)
T COG1373 183 GGFP 186 (398)
T ss_pred CCCc
Confidence 4444
No 281
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.60 E-value=0.00058 Score=71.86 Aligned_cols=75 Identities=20% Similarity=0.270 Sum_probs=46.5
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhhhh-------------------------------
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGV------------------------------- 434 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~vG~------------------------------- 434 (802)
+...-++++||||||||+++..++... |.+.++++..+-...+...
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSE 101 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHH
Confidence 334569999999999999986554433 6677777654321110000
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEcchhhhc
Q 003696 435 GARRVRSLFQAAKKKAPCIIFIDEIDAVG 463 (802)
Q Consensus 435 ~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg 463 (802)
....+..+........|.+++|||+-.+.
T Consensus 102 ~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 102 KRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 02233344445555678999999998874
No 282
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.59 E-value=0.0021 Score=69.84 Aligned_cols=79 Identities=22% Similarity=0.365 Sum_probs=51.2
Q ss_pred CCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCC---------C------c
Q 003696 450 APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRP---------G------R 514 (802)
Q Consensus 450 aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRp---------G------R 514 (802)
.+-||||||+|.+.. ..+.++|..+.-+-...++++|.+.+. +.|..++... | -
T Consensus 172 ~~iViiIDdLDR~~~----------~~i~~~l~~ik~~~~~~~i~~Il~~D~-~~l~~ai~~~~~~~~~~~~~~~yLeKi 240 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSP----------EEIVELLEAIKLLLDFPNIIFILAFDP-EILEKAIEKNYGEGFDEIDGREYLEKI 240 (325)
T ss_pred ceEEEEEcchhcCCc----------HHHHHHHHHHHHhcCCCCeEEEEEecH-HHHHHHHHhhcCcccccccHHHHHHhh
Confidence 456999999999932 345556655555555577887777763 2222222110 0 3
Q ss_pred cceEEEccCCCHHHHHHHHHHHhcc
Q 003696 515 FDRHIVVPNPDVRGRQEILELYLQD 539 (802)
Q Consensus 515 Fdr~I~v~lPd~eeR~~ILk~~l~~ 539 (802)
|+..+.+|.|+..+...++...+..
T Consensus 241 iq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 241 IQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred cCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 6668899999999888888777543
No 283
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00046 Score=84.38 Aligned_cols=163 Identities=23% Similarity=0.342 Sum_probs=107.8
Q ss_pred CcccccCC-HHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc----------CCCeeEeec
Q 003696 356 TFKDVKGC-DDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRAG 424 (802)
Q Consensus 356 tFdDViG~-deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea----------g~pfi~is~ 424 (802)
.++-++|. ++. ++.+++.|... ..++-+|.|.||+|||.++.-+|... +..++.++.
T Consensus 184 kldPvigr~dee---irRvi~iL~Rr---------tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 184 KLDPVIGRHDEE---IRRVIEILSRK---------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCCccCCchHH---HHHHHHHHhcc---------CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 36778887 443 34444433222 22577999999999999999999865 234555555
Q ss_pred cch--hhhhhhhhHHHHHHHHHHHH-hcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCC
Q 003696 425 SEF--EEMFVGVGARRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 501 (802)
Q Consensus 425 se~--~e~~vG~~~k~vr~lF~~Ar-~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~ 501 (802)
..+ ..++.|..+.+++++...+. .....||||||++-+.+...... .....| +|..+- .++++-+|+||..
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~--~~d~~n-lLkp~L---~rg~l~~IGatT~ 325 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG--AIDAAN-LLKPLL---ARGGLWCIGATTL 325 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch--HHHHHH-hhHHHH---hcCCeEEEecccH
Confidence 433 34567888899999999888 44567999999999976543311 222222 333332 3455889998874
Q ss_pred CC-----CCChhhcCCCccceEEEccCCCHHHHHHHHHHHhcc
Q 003696 502 PD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 539 (802)
Q Consensus 502 pe-----~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~ 539 (802)
-. .=||++-| ||+ .+.++.|+.+....||......
T Consensus 326 e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 326 ETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred HHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 32 34899998 886 5677888887766666654433
No 284
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.56 E-value=0.00059 Score=62.46 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ea 415 (802)
++++++||+|+|||+++..++.+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 378999999999999998887765
No 285
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.55 E-value=0.00024 Score=69.69 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=29.9
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhcCCCeeEe
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~eag~pfi~i 422 (802)
.+..|+|+||||||||++|+++|..++.+|+..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 456899999999999999999999999988854
No 286
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.55 E-value=0.00045 Score=76.35 Aligned_cols=164 Identities=20% Similarity=0.222 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHHhcCchh----hhhcC---CCCCceEEEEccCCCcHHHHHHHHHHhcCCCe-eEeeccchhhh---
Q 003696 362 GCDDAKQELVEVVEYLKNPSK----FTRLG---GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF-FYRAGSEFEEM--- 430 (802)
Q Consensus 362 G~deaK~eL~eiV~~Lk~p~~----~~~lG---~~~PkgVLL~GPPGTGKT~LArALA~eag~pf-i~is~se~~e~--- 430 (802)
-+..+.+.|..+.+.+..+.. +..+. ..+|+|+.||||-|.|||+|.-.+...+..+- ..+....|...
T Consensus 29 aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~ 108 (367)
T COG1485 29 AQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQ 108 (367)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHH
Confidence 344556666666664333221 12233 34789999999999999999999988764432 11111122111
Q ss_pred ----hhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCC-CCCC
Q 003696 431 ----FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL-PDIL 505 (802)
Q Consensus 431 ----~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~-pe~L 505 (802)
..|.. .-+..+-.... ..-.+|++||+.-= +-.....+..|+.+|= ..||++++|+|. |+.|
T Consensus 109 ~l~~l~g~~-dpl~~iA~~~~-~~~~vLCfDEF~Vt-------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 109 RLHTLQGQT-DPLPPIADELA-AETRVLCFDEFEVT-------DIADAMILGRLLEALF----ARGVVLVATSNTAPDNL 175 (367)
T ss_pred HHHHHcCCC-CccHHHHHHHH-hcCCEEEeeeeeec-------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHh
Confidence 11111 00111111111 12249999998532 1123456777887764 348999999996 4544
Q ss_pred ChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHH
Q 003696 506 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVK 549 (802)
Q Consensus 506 D~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~ 549 (802)
-+.=+...|| + | -.++|+.++.-..+....|+.
T Consensus 176 Y~dGlqR~~F-----L--P----~I~li~~~~~v~~vD~~~DYR 208 (367)
T COG1485 176 YKDGLQRERF-----L--P----AIDLIKSHFEVVNVDGPVDYR 208 (367)
T ss_pred cccchhHHhh-----H--H----HHHHHHHheEEEEecCCcccc
Confidence 3221111344 2 2 246888888777777666653
No 287
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.54 E-value=9.7e-05 Score=75.40 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=58.8
Q ss_pred EEEEccCCCcHHHHHHHH-HHh---cCCCeeEeeccchh-hhhh---hhhHH-------------HHHHHHHHHHhcCCc
Q 003696 394 ILLTGAPGTGKTLLAKAI-AGE---AGVPFFYRAGSEFE-EMFV---GVGAR-------------RVRSLFQAAKKKAPC 452 (802)
Q Consensus 394 VLL~GPPGTGKT~LArAL-A~e---ag~pfi~is~se~~-e~~v---G~~~k-------------~vr~lF~~Ar~~aP~ 452 (802)
.+++|.||+|||+.|-.. ... .|.+++. +...+. +.+. +.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999988665 433 3666554 433221 1000 00000 001111111111457
Q ss_pred EEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCC
Q 003696 453 IIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPD 525 (802)
Q Consensus 453 ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd 525 (802)
+|+|||++.+.+.|..........+ ..+.. ....++-||.+|..+..||+.+++ ..+.++++..++
T Consensus 82 liviDEa~~~~~~r~~~~~~~~~~~----~~l~~-hRh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~~ 147 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKKVPEII----EFLAQ-HRHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKLD 147 (193)
T ss_dssp EEEETTGGGTSB---T-T----HHH----HGGGG-CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE--
T ss_pred EEEEECChhhcCCCccccccchHHH----HHHHH-hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEeec
Confidence 9999999999887655221222232 33322 234567788889999999999986 777777776543
No 288
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.54 E-value=7.1e-05 Score=69.48 Aligned_cols=30 Identities=40% Similarity=0.760 Sum_probs=27.1
Q ss_pred EEEEccCCCcHHHHHHHHHHhcCCCeeEee
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~eag~pfi~is 423 (802)
|+|.||||+||||+|+.+|..+|.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998877654
No 289
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00033 Score=78.83 Aligned_cols=110 Identities=18% Similarity=0.317 Sum_probs=63.9
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhc----C-CCeeEeeccchh-------hh---hhhhh------HHHHHHHHHHHHh
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEA----G-VPFFYRAGSEFE-------EM---FVGVG------ARRVRSLFQAAKK 448 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~ea----g-~pfi~is~se~~-------e~---~vG~~------~k~vr~lF~~Ar~ 448 (802)
....++|+||+|+||||++..+|..+ | ..+..+....+. .. ..|.. ...+...+.. .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~--l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE--L 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH--h
Confidence 34579999999999999999999763 3 244444444431 00 11111 1112222222 2
Q ss_pred cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccccc-CCCEEEEeecCCCCCCChhhc
Q 003696 449 KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ-NEGIILMAATNLPDILDPALT 510 (802)
Q Consensus 449 ~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~-~~~VIVIaATN~pe~LD~ALl 510 (802)
...++|+||...... ....+.+.+..+.+... ...++|+.+|+..+.++..+.
T Consensus 214 ~~~DlVLIDTaG~~~---------~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 214 RNKHMVLIDTIGMSQ---------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred cCCCEEEEcCCCCCc---------ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 345799999985431 23345556666654433 345788888887777765543
No 290
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.46 E-value=0.00063 Score=78.58 Aligned_cols=75 Identities=24% Similarity=0.350 Sum_probs=52.0
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhh------hh--------hHHHHHHHHHHHHhcCCc
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------GV--------GARRVRSLFQAAKKKAPC 452 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~v------G~--------~~k~vr~lF~~Ar~~aP~ 452 (802)
...-+||+|+||+|||+|+..++... +.+.+|+++.+-.+... |. ....+..+...+.+..|.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~ 172 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQ 172 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCc
Confidence 33458899999999999999997754 46788888754432211 10 012244555666777899
Q ss_pred EEEEcchhhhcc
Q 003696 453 IIFIDEIDAVGS 464 (802)
Q Consensus 453 ILfIDEIDaLg~ 464 (802)
+|+||.|..+..
T Consensus 173 ~vVIDSIq~l~~ 184 (454)
T TIGR00416 173 ACVIDSIQTLYS 184 (454)
T ss_pred EEEEecchhhcc
Confidence 999999999854
No 291
>PTZ00202 tuzin; Provisional
Probab=97.44 E-value=0.0051 Score=70.40 Aligned_cols=205 Identities=18% Similarity=0.225 Sum_probs=108.3
Q ss_pred cccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhh-----
Q 003696 357 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF----- 431 (802)
Q Consensus 357 FdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~----- 431 (802)
-.+.+|.++...+|..++.. .....|+-+.|+||+|||||++++.+...++.+.++++.....+.+
T Consensus 261 ~~~FVGReaEla~Lr~VL~~---------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL~ 331 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRR---------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVVK 331 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhc---------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHHH
Confidence 45679999998888877752 2233456789999999999999999999999887777665332211
Q ss_pred -hhh--------hHHHHHHHHHHHHhc--CCcEEE--EcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEee
Q 003696 432 -VGV--------GARRVRSLFQAAKKK--APCIIF--IDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAA 498 (802)
Q Consensus 432 -vG~--------~~k~vr~lF~~Ar~~--aP~ILf--IDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaA 498 (802)
.|. ..+.+.+.+..++.. ...||+ |-|-+.+ .+.-|..+..--. ..-+.+++=.
T Consensus 332 ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l-----------~rvyne~v~la~d-rr~ch~v~ev- 398 (550)
T PTZ00202 332 ALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSL-----------QRVYNEVVALACD-RRLCHVVIEV- 398 (550)
T ss_pred HcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcH-----------HHHHHHHHHHHcc-chhheeeeee-
Confidence 111 112233333333222 222333 3343333 3344443322110 1112222211
Q ss_pred cCCCCCCChhhcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC
Q 003696 499 TNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG 578 (802)
Q Consensus 499 TN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~ 578 (802)
..+.|-.+-..--|+|. ..||.-+.++-.+..++.+. .+++..+.. +-|-+..|+..|+ |+.+-.+-.
T Consensus 399 --pleslt~~~~~lprldf-~~vp~fsr~qaf~y~~h~~d------al~l~~fve-~vgtns~d~del~--aav~qr~vs 466 (550)
T PTZ00202 399 --PLESLTIANTLLPRLDF-YLVPNFSRSQAFAYTQHAID------ALSLEHFVD-VVGTNSNDLDELL--AAVRQRRVS 466 (550)
T ss_pred --hHhhcchhcccCcccee-EecCCCCHHHHHHHHhhccc------hHHhhHHHH-hhcCCcccHHHHH--HHHHhcCCC
Confidence 12333322222227774 46777788887777776553 344444443 3466777887776 332221111
Q ss_pred CCccCHHHHHHHHHHHh
Q 003696 579 GEKLTATELEFAKDRIL 595 (802)
Q Consensus 579 ~~~It~edle~A~~ril 595 (802)
...-|...+-.|..+.-
T Consensus 467 ~~~yt~~kl~kamrql~ 483 (550)
T PTZ00202 467 AAEYTNQKLLKAMRQLQ 483 (550)
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 12234455666666553
No 292
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.001 Score=75.29 Aligned_cols=132 Identities=11% Similarity=0.112 Sum_probs=73.9
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhc-------CCCeeEeeccchhhh-------h---------hhhhHHHHHHHHHH
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAGSEFEEM-------F---------VGVGARRVRSLFQA 445 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~ea-------g~pfi~is~se~~e~-------~---------vG~~~k~vr~lF~~ 445 (802)
..|+.++|+||+|+||||++..+|..+ +..+..+++..+... | .......+...+..
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 346789999999999999999998754 234444444332110 1 11112233333333
Q ss_pred HHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccC-CCEEEEeecCCCCCCChhhcCCCc--cceEEEcc
Q 003696 446 AKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN-EGIILMAATNLPDILDPALTRPGR--FDRHIVVP 522 (802)
Q Consensus 446 Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~-~~VIVIaATN~pe~LD~ALlRpGR--Fdr~I~v~ 522 (802)
. ....+|+||++..... ....+..+...++..... ..++|+.+|.....+...+.+-.. ++ .+-+.
T Consensus 252 ~--~~~DlVLIDTaGr~~~--------~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~-~~I~T 320 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPK--------DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK-TVIFT 320 (388)
T ss_pred h--CCCCEEEEcCCCCCcc--------CHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC-EEEEE
Confidence 3 3457999999876632 122345555555544333 467888888877777755543111 23 34444
Q ss_pred CCCHHHHHH
Q 003696 523 NPDVRGRQE 531 (802)
Q Consensus 523 lPd~eeR~~ 531 (802)
..|...+..
T Consensus 321 KlDet~~~G 329 (388)
T PRK12723 321 KLDETTCVG 329 (388)
T ss_pred eccCCCcch
Confidence 555554443
No 293
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.43 E-value=0.00029 Score=76.04 Aligned_cols=113 Identities=21% Similarity=0.354 Sum_probs=65.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCC----------CeeEee-ccchhhhhh-------hh------hHHHHHHHHHHHH
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGV----------PFFYRA-GSEFEEMFV-------GV------GARRVRSLFQAAK 447 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~----------pfi~is-~se~~e~~v-------G~------~~k~vr~lF~~Ar 447 (802)
++++|.||+|+||||+.+++++...- ++..++ ..++...+. |. ...+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999997632 221111 112211110 10 1112335666777
Q ss_pred hcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcC--------CCccceEE
Q 003696 448 KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTR--------PGRFDRHI 519 (802)
Q Consensus 448 ~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlR--------pGRFdr~I 519 (802)
...|.||++||+.. ...+..++..+. .++.+|++|+.+ .+.....| .+-|++.+
T Consensus 192 ~~~P~villDE~~~------------~e~~~~l~~~~~-----~G~~vI~ttH~~-~~~~~~~r~~~~~l~~~~~~~r~i 253 (270)
T TIGR02858 192 SMSPDVIVVDEIGR------------EEDVEALLEALH-----AGVSIIATAHGR-DVEDLYKRPVFKELIENEAFERYV 253 (270)
T ss_pred hCCCCEEEEeCCCc------------HHHHHHHHHHHh-----CCCEEEEEechh-HHHHHHhChHHHHHHhcCceEEEE
Confidence 78999999999631 233455555542 356777788753 23223222 34567666
Q ss_pred Ecc
Q 003696 520 VVP 522 (802)
Q Consensus 520 ~v~ 522 (802)
.+.
T Consensus 254 ~L~ 256 (270)
T TIGR02858 254 VLS 256 (270)
T ss_pred EEe
Confidence 653
No 294
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.43 E-value=0.0007 Score=74.91 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=63.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhh-h------------h---hhhHHHHHHHHHHHHhcCCc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-F------------V---GVGARRVRSLFQAAKKKAPC 452 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~-~------------v---G~~~k~vr~lF~~Ar~~aP~ 452 (802)
+-++++||||||||+||..++.++ |.+.++++...-.+. + + ...+..+..+-...+...++
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 347899999999999999887543 677888876432111 0 0 01122222222334567789
Q ss_pred EEEEcchhhhccccccC---Cc----chHHHHHHHHHHhcccccCCCEEEEeecC
Q 003696 453 IIFIDEIDAVGSTRKQW---EG----HTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (802)
Q Consensus 453 ILfIDEIDaLg~~r~~~---~~----~~~~tLnqLL~eLDg~~~~~~VIVIaATN 500 (802)
+|+||-+-++..+.+-. .. ...+.+.+.|..|...-...++.+|.+..
T Consensus 136 lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 136 LIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred EEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 99999999997532111 00 11233455565555554555666665533
No 295
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.42 E-value=0.0029 Score=72.75 Aligned_cols=167 Identities=19% Similarity=0.255 Sum_probs=85.2
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhh---------------hhh-----hhHHHHHHHHHH
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM---------------FVG-----VGARRVRSLFQA 445 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~---------------~vG-----~~~k~vr~lF~~ 445 (802)
..|..++|+|++|+||||++..+|..+ |..+..+++..+... +.+ .....+++..+.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 457899999999999999999998865 555665655443110 011 011223444445
Q ss_pred HHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccce-----EEE
Q 003696 446 AKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDR-----HIV 520 (802)
Q Consensus 446 Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr-----~I~ 520 (802)
++.. .+|+||....+.. ....+.+|-...+-..+..-++|+-++...+.++.+- +|.. .+-
T Consensus 173 ~~~~--DvVIIDTAGr~~~--------d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~----~F~~~l~i~gvI 238 (437)
T PRK00771 173 FKKA--DVIIVDTAGRHAL--------EEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAK----AFHEAVGIGGII 238 (437)
T ss_pred hhcC--CEEEEECCCcccc--------hHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHH----HHHhcCCCCEEE
Confidence 4443 7999998765522 2333333333322223444455665555433333221 2322 223
Q ss_pred ccCCCHHHHHH-HHHHHh-ccCC---------C--CCcccHHHHHhcCCCCCHHHHHHHHHHHH
Q 003696 521 VPNPDVRGRQE-ILELYL-QDKP---------L--ADDVDVKAIARGTPGFNGADLANLVNIAA 571 (802)
Q Consensus 521 v~lPd~eeR~~-ILk~~l-~~~~---------l--~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa 571 (802)
+..-|...|.. +|.... .+.+ . -...+.+.++.+.-| -+|+..|++.|.
T Consensus 239 lTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilg--mgd~~~l~e~~~ 300 (437)
T PRK00771 239 ITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG--MGDLESLLEKVE 300 (437)
T ss_pred EecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhC--CCChHHHHHHHH
Confidence 33444443332 222211 1111 1 123345667766644 368888887664
No 296
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.41 E-value=0.00023 Score=83.31 Aligned_cols=63 Identities=22% Similarity=0.388 Sum_probs=44.4
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcC-CCeeEeec
Q 003696 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-VPFFYRAG 424 (802)
Q Consensus 356 tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag-~pfi~is~ 424 (802)
-|+|+.|++++++.+.+.+. ... ..++. ..+-++|.||||+|||+||+.||+-+. .|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~---~Aa--~gl~~-~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFR---HAA--QGLEE-KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHH---HHH--HhcCC-CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 49999999999877765442 211 11222 224789999999999999999998663 46665544
No 297
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.39 E-value=0.00059 Score=70.88 Aligned_cols=114 Identities=15% Similarity=0.141 Sum_probs=63.5
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHhc---------CCCeeEeeccch-h-hhhh-----------------------
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF-E-EMFV----------------------- 432 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~ea---------g~pfi~is~se~-~-e~~v----------------------- 432 (802)
|.+...-+.|+||||+|||+++..++... +...++++..+- . ..+.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 33444567899999999999999998543 256777776441 1 0000
Q ss_pred --hhhHHHHHHHHHHHHhc-CCcEEEEcchhhhccccccCC---cchHHHHHHHHHHhcccccCCCEEEEeecC
Q 003696 433 --GVGARRVRSLFQAAKKK-APCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (802)
Q Consensus 433 --G~~~k~vr~lF~~Ar~~-aP~ILfIDEIDaLg~~r~~~~---~~~~~tLnqLL~eLDg~~~~~~VIVIaATN 500 (802)
......+..+-...... .+++|+||-+.++....-... ....+.+.+++..|..+....++.||.+..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 00011112222223344 789999999998753211111 122345556666665554555666665543
No 298
>PRK07261 topology modulation protein; Provisional
Probab=97.37 E-value=0.00035 Score=70.12 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=28.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEeec
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 424 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is~ 424 (802)
-|+++|+||+||||+|+.++...+.|++..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 38999999999999999999999999887654
No 299
>PRK04296 thymidine kinase; Provisional
Probab=97.37 E-value=0.00067 Score=69.22 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=41.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHhc---CCCeeEeecc----chhh---hhhhhh-----HHHHHHHHHHHH--hcCCcEEE
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS----EFEE---MFVGVG-----ARRVRSLFQAAK--KKAPCIIF 455 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~ea---g~pfi~is~s----e~~e---~~vG~~-----~k~vr~lF~~Ar--~~aP~ILf 455 (802)
-.+++||||+|||+++..++.++ +..++.+... .... ...|.. .....+++..++ ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999999888765 5555544321 1000 001110 112334444433 34567999
Q ss_pred Ecchhhh
Q 003696 456 IDEIDAV 462 (802)
Q Consensus 456 IDEIDaL 462 (802)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999766
No 300
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.36 E-value=0.00072 Score=69.85 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=64.1
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHhc---C------CCeeEeeccch-hh-hhhh---------------------h
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---G------VPFFYRAGSEF-EE-MFVG---------------------V 434 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~ea---g------~pfi~is~se~-~e-~~vG---------------------~ 434 (802)
|.+.-.-+.|+||||+|||+++..+|... + ...++++..+- .. .+.. .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 33444568899999999999999998753 3 56677766432 11 1000 0
Q ss_pred hHHHHHHHHHHH----HhcCCcEEEEcchhhhccccccCC---cchHHHHHHHHHHhcccccCCCEEEEeecC
Q 003696 435 GARRVRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (802)
Q Consensus 435 ~~k~vr~lF~~A----r~~aP~ILfIDEIDaLg~~r~~~~---~~~~~tLnqLL~eLDg~~~~~~VIVIaATN 500 (802)
....+...+... ....+++|+||-+..+........ ....+.+.+++..|..+....++.||.++.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 011112222222 245678999999998854321111 122345566666666665555666665543
No 301
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.35 E-value=0.00076 Score=69.45 Aligned_cols=104 Identities=24% Similarity=0.336 Sum_probs=57.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHh-----cCCCe-------------eEeeccchh----hhhhhhhHHHHHHHHHHHHhc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGE-----AGVPF-------------FYRAGSEFE----EMFVGVGARRVRSLFQAAKKK 449 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~e-----ag~pf-------------i~is~se~~----e~~vG~~~k~vr~lF~~Ar~~ 449 (802)
+-++|+||.|+||||+.|.++.. .|.++ ..++..+-. ..+. ....++..+++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~-~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFY-AELRRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHH-HHHHHHHHHHHhccCC
Confidence 57899999999999999999863 34332 111111100 0111 1124566777766655
Q ss_pred CCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCC
Q 003696 450 APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (802)
Q Consensus 450 aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~L 505 (802)
.|.+|++||.-.-... .........++..+. . .+..+|.+|+.++.+
T Consensus 105 ~p~llllDEp~~glD~-----~~~~~l~~~ll~~l~---~-~~~tiiivTH~~~~~ 151 (199)
T cd03283 105 EPVLFLLDEIFKGTNS-----RERQAASAAVLKFLK---N-KNTIGIISTHDLELA 151 (199)
T ss_pred CCeEEEEecccCCCCH-----HHHHHHHHHHHHHHH---H-CCCEEEEEcCcHHHH
Confidence 7899999996332110 011222344555553 1 244566677765543
No 302
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00038 Score=73.84 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=19.7
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 003696 393 GILLTGAPGTGKTLLAKAIAG 413 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~ 413 (802)
-|-|.||+|||||||.+.+|+
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999999998
No 303
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.34 E-value=0.00064 Score=85.37 Aligned_cols=135 Identities=25% Similarity=0.350 Sum_probs=90.6
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhh--hhh-----h--hHHHHH--HHHHHHHhcCCcEEEEcc
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM--FVG-----V--GARRVR--SLFQAAKKKAPCIIFIDE 458 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~--~vG-----~--~~k~vr--~lF~~Ar~~aP~ILfIDE 458 (802)
.-+++||.|.||+|||++..|+|++.|-.++.|+.++-.+. ..| + ++-+.+ .+....+.+ .-|++||
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G--~WVlLDE 1619 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG--GWVLLDE 1619 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC--CEEEeeh
Confidence 34679999999999999999999999999999998764332 111 1 111111 122233333 4789999
Q ss_pred hhhhccccccCCcchHHHHHHHHHHhcc------------cccCCCEEEEeecCCC------CCCChhhcCCCccceEEE
Q 003696 459 IDAVGSTRKQWEGHTKKTLHQLLVEMDG------------FEQNEGIILMAATNLP------DILDPALTRPGRFDRHIV 520 (802)
Q Consensus 459 IDaLg~~r~~~~~~~~~tLnqLL~eLDg------------~~~~~~VIVIaATN~p------e~LD~ALlRpGRFdr~I~ 520 (802)
+.-. ++.++..|=.++|. |.-..+..|+||-|.- ..|+..++. ||. +|.
T Consensus 1620 iNLa----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~ 1686 (4600)
T COG5271 1620 INLA----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVK 1686 (4600)
T ss_pred hhhh----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEE
Confidence 9755 23444444333332 3344568888888864 368888887 884 678
Q ss_pred ccCCCHHHHHHHHHHHhcc
Q 003696 521 VPNPDVRGRQEILELYLQD 539 (802)
Q Consensus 521 v~lPd~eeR~~ILk~~l~~ 539 (802)
+...+.++...|..+...+
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred ecccccchHHHHHHhhCCc
Confidence 8888888888888776654
No 304
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.33 E-value=0.00089 Score=72.19 Aligned_cols=73 Identities=26% Similarity=0.406 Sum_probs=50.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHH------hcCCCeeEeeccchhhhh-hhhhHHHHHHHHHHHHh--------cCCcEEEE
Q 003696 392 KGILLTGAPGTGKTLLAKAIAG------EAGVPFFYRAGSEFEEMF-VGVGARRVRSLFQAAKK--------KAPCIIFI 456 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~------eag~pfi~is~se~~e~~-vG~~~k~vr~lF~~Ar~--------~aP~ILfI 456 (802)
..+||.||.|.||+.||+-|-. .+..+|+.++|..+...- .......++..|..|+. ....++|+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEeh
Confidence 4599999999999999999853 557899999998874321 11111233334433322 23459999
Q ss_pred cchhhhcc
Q 003696 457 DEIDAVGS 464 (802)
Q Consensus 457 DEIDaLg~ 464 (802)
|||..+|.
T Consensus 289 deigelga 296 (531)
T COG4650 289 DEIGELGA 296 (531)
T ss_pred HhhhhcCc
Confidence 99999965
No 305
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.33 E-value=0.00054 Score=65.27 Aligned_cols=33 Identities=39% Similarity=0.624 Sum_probs=26.6
Q ss_pred EEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchh
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~eag~pfi~is~se~~ 428 (802)
|+++||||+||||+|+.++...+ ...++...+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~ 34 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIR 34 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHH
Confidence 78999999999999999999998 4444544443
No 306
>PRK14974 cell division protein FtsY; Provisional
Probab=97.32 E-value=0.0019 Score=71.88 Aligned_cols=73 Identities=26% Similarity=0.324 Sum_probs=44.9
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhh-------h---hh----------hhHHHHHHHHHHH
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-------F---VG----------VGARRVRSLFQAA 446 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~-------~---vG----------~~~k~vr~lF~~A 446 (802)
.|.-++|+||||+||||++..+|..+ |..+..+.+..+... + .| .....+.+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 47789999999999999888888754 555555554432110 0 01 0112233444444
Q ss_pred HhcCCcEEEEcchhhh
Q 003696 447 KKKAPCIIFIDEIDAV 462 (802)
Q Consensus 447 r~~aP~ILfIDEIDaL 462 (802)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5555578999988665
No 307
>PRK10536 hypothetical protein; Provisional
Probab=97.32 E-value=0.0018 Score=69.45 Aligned_cols=45 Identities=27% Similarity=0.408 Sum_probs=32.1
Q ss_pred CcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHh
Q 003696 356 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 414 (802)
Q Consensus 356 tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~e 414 (802)
.|.-|.+.......+...+. +. .-++++||+|||||+||.+++.+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~---~~-----------~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIE---SK-----------QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHh---cC-----------CeEEEECCCCCCHHHHHHHHHHH
Confidence 44556666666555555443 11 26999999999999999999885
No 308
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.32 E-value=0.0011 Score=72.92 Aligned_cols=158 Identities=23% Similarity=0.367 Sum_probs=92.1
Q ss_pred ccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHH-HH--hcCCCeeEeeccch--hhh---
Q 003696 360 VKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAI-AG--EAGVPFFYRAGSEF--EEM--- 430 (802)
Q Consensus 360 ViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArAL-A~--eag~pfi~is~se~--~e~--- 430 (802)
+.|..+..+.+.+++.. ... | -...+++.||.|+|||++.-.. +. +.|-.|+.+....+ .++
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~-------g--EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILH-------G--ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIAL 96 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHh-------c--CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHH
Confidence 46777777778777764 111 1 1247999999999999775544 33 56666665533222 111
Q ss_pred ----------------hhhhhHHHHHHHHHHHHh-----cCCcEEEEcchhhhccccccCCcchHHHH-HHHHHHhcccc
Q 003696 431 ----------------FVGVGARRVRSLFQAAKK-----KAPCIIFIDEIDAVGSTRKQWEGHTKKTL-HQLLVEMDGFE 488 (802)
Q Consensus 431 ----------------~vG~~~k~vr~lF~~Ar~-----~aP~ILfIDEIDaLg~~r~~~~~~~~~tL-nqLL~eLDg~~ 488 (802)
-.|.....+..+....++ ..+.|.++||||.+.+ +.++++ ..|+..-. .
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~-------h~rQtllYnlfDisq--s 167 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP-------HSRQTLLYNLFDISQ--S 167 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc-------chhhHHHHHHHHHHh--h
Confidence 112222333344444433 2234566789999854 234443 33333222 2
Q ss_pred cCCCEEEEeecCCCCCCC---hhhcCCCccceE-EEccC-CCHHHHHHHHHHHh
Q 003696 489 QNEGIILMAATNLPDILD---PALTRPGRFDRH-IVVPN-PDVRGRQEILELYL 537 (802)
Q Consensus 489 ~~~~VIVIaATN~pe~LD---~ALlRpGRFdr~-I~v~l-Pd~eeR~~ILk~~l 537 (802)
.+.++.||+.|.+-+.++ +...+ ||... |++++ -...+-.++++..+
T Consensus 168 ~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 168 ARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 356799999998876554 45554 99875 55543 35777888888766
No 309
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.32 E-value=0.0017 Score=67.35 Aligned_cols=96 Identities=22% Similarity=0.231 Sum_probs=55.6
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHhc----CCCeeEeeccchhhh--------------hh------------h---
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEM--------------FV------------G--- 433 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~ea----g~pfi~is~se~~e~--------------~v------------G--- 433 (802)
|.+....+|++||||||||+++..++.+. |-+.++++..+-.+. +. .
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 44555679999999999999999876432 778877765432111 00 0
Q ss_pred ----hhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHh
Q 003696 434 ----VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEM 484 (802)
Q Consensus 434 ----~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eL 484 (802)
.....+..+.+..+...+.+++||-+..+... .........+..+...+
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~--~~~~~~r~~l~~l~~~l 147 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLY--DDPEELRRFLRALIKFL 147 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTS--SSGGGHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhc--CCHHHHHHHHHHHHHHH
Confidence 01122333444455567799999999999221 11222344555555555
No 310
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.30 E-value=0.00096 Score=68.47 Aligned_cols=98 Identities=26% Similarity=0.315 Sum_probs=52.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhh----hhhhHHHHHHHHHHHH---------hcCCcEEE
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF----VGVGARRVRSLFQAAK---------KKAPCIIF 455 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~----vG~~~k~vr~lF~~Ar---------~~aP~ILf 455 (802)
+..++.||||||||++++.+...+ +..++.+..+.-...- .+.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 368889999999999999987543 5666665543221110 0111111211111111 12236999
Q ss_pred EcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCC
Q 003696 456 IDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 501 (802)
Q Consensus 456 IDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~ 501 (802)
|||+..+. ...+..|+..+.. ...++++++-.+.
T Consensus 99 VDEasmv~----------~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVD----------SRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-B----------HHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred EecccccC----------HHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 99998883 4556666666553 3456788876663
No 311
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.29 E-value=0.002 Score=67.25 Aligned_cols=39 Identities=28% Similarity=0.391 Sum_probs=30.0
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHhc----CCCeeEeecc
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGS 425 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~ea----g~pfi~is~s 425 (802)
|.....-++|.|+||+|||+++..++... +.++++++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 44444568999999999999999887643 7787777643
No 312
>PF14516 AAA_35: AAA-like domain
Probab=97.29 E-value=0.008 Score=66.67 Aligned_cols=158 Identities=19% Similarity=0.205 Sum_probs=85.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhh-------hhhh------------------------hHH
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-------FVGV------------------------GAR 437 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~-------~vG~------------------------~~k 437 (802)
.-+.+.||..+|||++...+...+ |...+++++..+... |... ...
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~ 111 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKI 111 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChh
Confidence 368999999999999999887654 777788877654221 1000 011
Q ss_pred HHHHHHHHH---HhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhccccc----CCC--EEEEeecCCCCCCChh
Q 003696 438 RVRSLFQAA---KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ----NEG--IILMAATNLPDILDPA 508 (802)
Q Consensus 438 ~vr~lF~~A---r~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~----~~~--VIVIaATN~pe~LD~A 508 (802)
.....|+.. ....|-||+|||||.+.... ......+ .+|+.+-.-.. -.. +++++.|. +......
T Consensus 112 ~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~----~~~~dF~-~~LR~~~~~~~~~~~~~~L~li~~~~t~-~~~~~~~ 185 (331)
T PF14516_consen 112 SCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP----QIADDFF-GLLRSWYEQRKNNPIWQKLRLILAGSTE-DYIILDI 185 (331)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEechhhhccCc----chHHHHH-HHHHHHHHhcccCcccceEEEEEecCcc-cccccCC
Confidence 222333321 22467899999999996521 0112222 22222211111 112 33333332 2222111
Q ss_pred hcCCCccceEEEccCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCC
Q 003696 509 LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGF 558 (802)
Q Consensus 509 LlRpGRFdr~I~v~lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~ 558 (802)
-.+|=.+...|.++.-+.++-..+++.|-.. ... ..++.|-..|.|.
T Consensus 186 ~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~-~~~~~l~~~tgGh 232 (331)
T PF14516_consen 186 NQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQ-EQLEQLMDWTGGH 232 (331)
T ss_pred CCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCH-HHHHHHHHHHCCC
Confidence 1334344456777777888988888877432 222 2277777777774
No 313
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.26 E-value=0.0018 Score=66.95 Aligned_cols=125 Identities=25% Similarity=0.454 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhhhhHHHHHHHHHHH
Q 003696 367 KQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAA 446 (802)
Q Consensus 367 K~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG~~~k~vr~lF~~A 446 (802)
+..|..+|....+| |.+....++|.|+.|+|||++.+.|+.+ ++.-+...... . +.....
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~~~------k----d~~~~l 93 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDFDD------K----DFLEQL 93 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccCCC------c----HHHHHH
Confidence 45555555554444 5566667899999999999999999666 22111111110 1 111122
Q ss_pred HhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHh-ccccc---------CCCEEEEeecCCCCCC-ChhhcCCCcc
Q 003696 447 KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEM-DGFEQ---------NEGIILMAATNLPDIL-DPALTRPGRF 515 (802)
Q Consensus 447 r~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eL-Dg~~~---------~~~VIVIaATN~pe~L-D~ALlRpGRF 515 (802)
..+ -|+.|||++.+..+ ....+..++..- +.+.. ....++|||||..+-| |+.=-| ||
T Consensus 94 ~~~--~iveldEl~~~~k~-------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf 162 (198)
T PF05272_consen 94 QGK--WIVELDELDGLSKK-------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF 162 (198)
T ss_pred HHh--HheeHHHHhhcchh-------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE
Confidence 222 38999999998532 234555555432 22111 1236889999988755 444445 77
Q ss_pred ceEEEccC
Q 003696 516 DRHIVVPN 523 (802)
Q Consensus 516 dr~I~v~l 523 (802)
..|.+..
T Consensus 163 -~~v~v~~ 169 (198)
T PF05272_consen 163 -WPVEVSK 169 (198)
T ss_pred -EEEEEcC
Confidence 4555543
No 314
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.012 Score=62.63 Aligned_cols=137 Identities=13% Similarity=0.095 Sum_probs=95.7
Q ss_pred CCCCceEEEEccCC-CcHHHHHHHHHHhcCC---------CeeEeeccchhhh-hhhhhHHHHHHHHHHHHh----cCCc
Q 003696 388 GKLPKGILLTGAPG-TGKTLLAKAIAGEAGV---------PFFYRAGSEFEEM-FVGVGARRVRSLFQAAKK----KAPC 452 (802)
Q Consensus 388 ~~~PkgVLL~GPPG-TGKT~LArALA~eag~---------pfi~is~se~~e~-~vG~~~k~vr~lF~~Ar~----~aP~ 452 (802)
.++.+..||.|..+ +||..++.-++....+ .++.+....-... --.-+...+|++-+.+.. ....
T Consensus 12 ~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~K 91 (263)
T PRK06581 12 NKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYK 91 (263)
T ss_pred CcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcE
Confidence 45667899999998 9999998888775532 2333322110000 001234566666555432 3446
Q ss_pred EEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHHHHH
Q 003696 453 IIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEI 532 (802)
Q Consensus 453 ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR~~I 532 (802)
|++||++|.| ...+.|.||..++. +..++++|..|+.++.|.+.+++ |+ ..+.++.|+...-.++
T Consensus 92 ViII~~ae~m----------t~~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e~ 156 (263)
T PRK06581 92 VAIIYSAELM----------NLNAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYNEL 156 (263)
T ss_pred EEEEechHHh----------CHHHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHHH
Confidence 9999999999 46789999999995 56677777778888999999987 77 6788999998888887
Q ss_pred HHHHhcc
Q 003696 533 LELYLQD 539 (802)
Q Consensus 533 Lk~~l~~ 539 (802)
....+..
T Consensus 157 ~~~~~~p 163 (263)
T PRK06581 157 YSQFIQP 163 (263)
T ss_pred HHHhccc
Confidence 7776643
No 315
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.23 E-value=0.0018 Score=68.52 Aligned_cols=34 Identities=29% Similarity=0.515 Sum_probs=28.0
Q ss_pred EEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccch
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 427 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~ 427 (802)
|+|+|+||+||||+|++++..+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999876 566777765444
No 316
>PRK06762 hypothetical protein; Provisional
Probab=97.21 E-value=0.00095 Score=65.81 Aligned_cols=40 Identities=23% Similarity=0.363 Sum_probs=32.4
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e 429 (802)
+|+-++|+|+||+||||+|+.++..++..++.++...+..
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 3667999999999999999999999865666666655543
No 317
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.21 E-value=0.00031 Score=70.69 Aligned_cols=23 Identities=48% Similarity=0.746 Sum_probs=20.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHhc
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~ea 415 (802)
.++|+|+||+||||+++.+...+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999887
No 318
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.20 E-value=0.0062 Score=68.08 Aligned_cols=160 Identities=19% Similarity=0.226 Sum_probs=91.2
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhh------h-
Q 003696 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM------F- 431 (802)
Q Consensus 359 DViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~------~- 431 (802)
.|.+.+.+...|..++- + ..-..|-.+.|||-.|||||.+.|.+-+..+.+.+++++-+.... .
T Consensus 7 ~v~~Re~qi~~L~~Llg---~------~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLG---N------NSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred CccchHHHHHHHHHHhC---C------CCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHH
Confidence 34566666666655442 1 122478789999999999999999999999999999887553211 0
Q ss_pred --------hh----hhHHHHHH---HHHH--HHhc--CCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCC
Q 003696 432 --------VG----VGARRVRS---LFQA--AKKK--APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEG 492 (802)
Q Consensus 432 --------vG----~~~k~vr~---lF~~--Ar~~--aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~ 492 (802)
.| .....+.+ +|.+ +..+ ..-.|++|.+|.+-. .....++.|+..-+-...+.-
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD-------~~a~ll~~l~~L~el~~~~~i 150 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD-------MDAILLQCLFRLYELLNEPTI 150 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc-------cchHHHHHHHHHHHHhCCCce
Confidence 01 11122222 2333 2222 245889999999932 123444454433222222222
Q ss_pred EEEEeecCCCCCCChhhcCCCccce-EEEccCCCHHHHHHHHHHHh
Q 003696 493 IILMAATNLPDILDPALTRPGRFDR-HIVVPNPDVRGRQEILELYL 537 (802)
Q Consensus 493 VIVIaATN~pe~LD~ALlRpGRFdr-~I~v~lPd~eeR~~ILk~~l 537 (802)
+|++..+-.+.. -+.+-|-++- .++||.|+.++...|+.+--
T Consensus 151 ~iils~~~~e~~---y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 151 VIILSAPSCEKQ---YLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred EEEEeccccHHH---hhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 222222222211 1122234443 78999999999999987643
No 319
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.19 E-value=0.0019 Score=75.39 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=25.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCCCeeE
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~pfi~ 421 (802)
-+|||+|.|||||+-+.|.+++-....++.
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s~RAV~t 512 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTSPRAVFT 512 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcCcceeEe
Confidence 369999999999999999999987766554
No 320
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.19 E-value=0.0013 Score=67.40 Aligned_cols=95 Identities=21% Similarity=0.322 Sum_probs=54.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCC----eeEeec-cchhh---------hhhhhhHHHHHHHHHHHHhcCCcEEEEcc
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVP----FFYRAG-SEFEE---------MFVGVGARRVRSLFQAAKKKAPCIIFIDE 458 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~p----fi~is~-se~~e---------~~vG~~~k~vr~lF~~Ar~~aP~ILfIDE 458 (802)
-++++||+|+||||+++++++....+ ++.+.. .++.. .-++.......+.+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 47899999999999999998876422 222211 11110 00111122244455566667899999999
Q ss_pred hhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCC
Q 003696 459 IDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (802)
Q Consensus 459 IDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~ 504 (802)
+-. ...+..++.... .+..+++++..++.
T Consensus 83 ird------------~e~~~~~l~~a~-----~G~~v~~t~Ha~~~ 111 (198)
T cd01131 83 MRD------------LETIRLALTAAE-----TGHLVMSTLHTNSA 111 (198)
T ss_pred CCC------------HHHHHHHHHHHH-----cCCEEEEEecCCcH
Confidence 731 234444444432 23456667765543
No 321
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.18 E-value=0.0024 Score=64.31 Aligned_cols=34 Identities=32% Similarity=0.571 Sum_probs=29.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccc
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 426 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is~se 426 (802)
-+|+.||||+|||++|..++.+.+.+++++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 4899999999999999999999888888776543
No 322
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.17 E-value=0.0023 Score=68.12 Aligned_cols=38 Identities=29% Similarity=0.253 Sum_probs=29.0
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHhc----CCCeeEeec
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAG 424 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~ea----g~pfi~is~ 424 (802)
|...-.-++|.||||+|||+++..++..+ |.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 34444568999999999999999887653 667777665
No 323
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.15 E-value=0.0031 Score=66.44 Aligned_cols=40 Identities=35% Similarity=0.517 Sum_probs=29.9
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHh---cCCCeeEeeccc
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGSE 426 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~e---ag~pfi~is~se 426 (802)
|.+....+|++||||||||+++..++.+ .|-+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 4445567999999999999999876543 367777776544
No 324
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.14 E-value=0.0098 Score=64.80 Aligned_cols=95 Identities=26% Similarity=0.330 Sum_probs=60.8
Q ss_pred ccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc-----CCCeeEe-------eccc
Q 003696 360 VKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYR-------AGSE 426 (802)
Q Consensus 360 ViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea-----g~pfi~i-------s~se 426 (802)
+.|+.-+++.+-..+.- +.++ .-+.|--+=|+|++||||..+++.||+.+ ..||+.. .-..
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~------~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANP------NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCC------CCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 68998888888776654 4333 23456677799999999999999999975 2233311 1111
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhc
Q 003696 427 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVG 463 (802)
Q Consensus 427 ~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg 463 (802)
-.+.|-.+-..++++ .+....-+|.++||.|.|-
T Consensus 158 ~ie~Yk~eL~~~v~~---~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 158 KIEDYKEELKNRVRG---TVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHH---HHHhcCCceEEechhhhcC
Confidence 123333333334443 3445556799999999993
No 325
>PRK05973 replicative DNA helicase; Provisional
Probab=97.12 E-value=0.0046 Score=65.70 Aligned_cols=36 Identities=36% Similarity=0.376 Sum_probs=27.9
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeecc
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 425 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~s 425 (802)
...-+++.|+||+|||+++-.++.+. |.+.++++..
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 33468899999999999999887644 7777776654
No 326
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.0017 Score=65.94 Aligned_cols=33 Identities=33% Similarity=0.520 Sum_probs=26.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccch
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is~se~ 427 (802)
.|+|.||||+||||+|+.||.. .++..++-.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHH
Confidence 4899999999999999999999 45556654444
No 327
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.10 E-value=0.00064 Score=72.57 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=59.2
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCC---eeEee-ccchh
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---FFYRA-GSEFE 428 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~p---fi~is-~se~~ 428 (802)
...+++++.-.....+.+.+++...- +...++++.||+|+||||+++++..+.... ++.+. ..++.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 44578888766665555555554321 112489999999999999999999877433 33322 11110
Q ss_pred hh------h-hhhhHHHHHHHHHHHHhcCCcEEEEcchhhh
Q 003696 429 EM------F-VGVGARRVRSLFQAAKKKAPCIIFIDEIDAV 462 (802)
Q Consensus 429 e~------~-vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaL 462 (802)
-. + .........+++..+-...|++|+|+|+..-
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~ 209 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDP 209 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SC
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCCH
Confidence 00 0 0112334567777788889999999998543
No 328
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.09 E-value=0.0011 Score=66.42 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=31.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchh
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~ 428 (802)
+-++|.||||+||||+|++++...+.+++.++...+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~ 39 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFI 39 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHH
Confidence 4689999999999999999999998888776655443
No 329
>PRK13947 shikimate kinase; Provisional
Probab=97.09 E-value=0.0005 Score=67.89 Aligned_cols=31 Identities=35% Similarity=0.465 Sum_probs=28.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEee
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is 423 (802)
+|+|.|+||+|||++++.+|..+|.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997644
No 330
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.08 E-value=0.0035 Score=60.40 Aligned_cols=51 Identities=27% Similarity=0.400 Sum_probs=40.1
Q ss_pred cccCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc
Q 003696 359 DVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 359 DViG~deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea 415 (802)
.|.|++-|++.+...+.. +.++ ..+.|.-+-|+||||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 579999998888887664 4443 23446667799999999999999999975
No 331
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.0022 Score=66.56 Aligned_cols=23 Identities=57% Similarity=0.784 Sum_probs=21.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHhc
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~ea 415 (802)
-++|+|+||+|||++|+.+|+++
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 47899999999999999999987
No 332
>PRK09354 recA recombinase A; Provisional
Probab=97.07 E-value=0.0022 Score=71.66 Aligned_cols=107 Identities=18% Similarity=0.224 Sum_probs=60.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhh-h------------h---hhhHHHHHHHHHHHHhcCCc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-F------------V---GVGARRVRSLFQAAKKKAPC 452 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~-~------------v---G~~~k~vr~lF~~Ar~~aP~ 452 (802)
+-++++||||||||+|+..++.++ |...++++...-.+. + + ...+..+..+-...+...+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 457899999999999999886543 777787776542111 0 0 01112222222334556789
Q ss_pred EEEEcchhhhccccc---cCC----cchHHHHHHHHHHhcccccCCCEEEEee
Q 003696 453 IIFIDEIDAVGSTRK---QWE----GHTKKTLHQLLVEMDGFEQNEGIILMAA 498 (802)
Q Consensus 453 ILfIDEIDaLg~~r~---~~~----~~~~~tLnqLL~eLDg~~~~~~VIVIaA 498 (802)
+|+||=+-++..+.. ... +...+.+.+.|..+-++-...++.+|.+
T Consensus 141 lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~t 193 (349)
T PRK09354 141 LIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFI 193 (349)
T ss_pred EEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 999999999865211 100 1112334454554444444556666655
No 333
>PHA02624 large T antigen; Provisional
Probab=97.07 E-value=0.0028 Score=74.80 Aligned_cols=120 Identities=17% Similarity=0.166 Sum_probs=68.4
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccc-
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK- 467 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~- 467 (802)
+.-+.++|+||||||||+++.+|++.++...+.++++.-...| ...-.....+++||++-.-.-...
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~F------------wL~pl~D~~~~l~dD~t~~~~~~~~ 496 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNF------------ELGCAIDQFMVVFEDVKGQPADNKD 496 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHH------------HhhhhhhceEEEeeecccccccccc
Confidence 3335899999999999999999999997667777755432222 111111113778888753322110
Q ss_pred cCCcchHHHHHHHHHHhccc-c-------cCC-C---EEEEeecCCCCCCChhhcCCCccceEEEccC
Q 003696 468 QWEGHTKKTLHQLLVEMDGF-E-------QNE-G---IILMAATNLPDILDPALTRPGRFDRHIVVPN 523 (802)
Q Consensus 468 ~~~~~~~~tLnqLL~eLDg~-~-------~~~-~---VIVIaATN~pe~LD~ALlRpGRFdr~I~v~l 523 (802)
-..+..-.-+..|-..|||- . .+. . -..|.||| ...|+..+.- ||.+++.|..
T Consensus 497 Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~N-ey~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 497 LPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMN-EYLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred CCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeec-CcccchhHHH--HHHHhccccc
Confidence 00111112234455666664 1 000 0 12344666 3567777776 8988888853
No 334
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.05 E-value=0.0021 Score=72.72 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=21.0
Q ss_pred EEEEccCCCcHHHHHHHHHHhcC
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEAG 416 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~eag 416 (802)
.+|+||||+|||+|++.|++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 88999999999999999998663
No 335
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.02 E-value=0.0036 Score=65.14 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=57.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHH-----hcCCCeeE--------------eeccchhhhhhhhhHHHHHHHHHH-HHhcC
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAG-----EAGVPFFY--------------RAGSEFEEMFVGVGARRVRSLFQA-AKKKA 450 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~-----eag~pfi~--------------is~se~~e~~vG~~~k~vr~lF~~-Ar~~a 450 (802)
++.++|+||.|+|||++.|.++. ..|.+... +...+-...........++.+... +....
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 46799999999999999999983 33433211 111110111111112223332222 22356
Q ss_pred CcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhh
Q 003696 451 PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPAL 509 (802)
Q Consensus 451 P~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~AL 509 (802)
|.+++|||+..-... ......+..++..+-. ....+..+|.+|+..+.+....
T Consensus 109 ~slvllDE~~~gtd~-----~~~~~~~~ail~~l~~-~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 109 RSLVLIDEFGKGTDT-----EDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CcEEEeccccCCCCH-----HHHHHHHHHHHHHHHh-cCCCCcEEEEEcChHHHHHhhh
Confidence 889999998644210 0112233344444421 1112346666888776555443
No 336
>PRK03839 putative kinase; Provisional
Probab=97.02 E-value=0.00055 Score=68.56 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=28.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEee
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is 423 (802)
.|+|.|+||+||||+++.+|+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999987643
No 337
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.02 E-value=0.0019 Score=61.59 Aligned_cols=30 Identities=33% Similarity=0.687 Sum_probs=28.0
Q ss_pred EEEEccCCCcHHHHHHHHHHhcCCCeeEee
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~eag~pfi~is 423 (802)
|.+.|+||+|||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998766
No 338
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.01 E-value=0.0073 Score=62.34 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=26.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhcCCCee
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFF 420 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~eag~pfi 420 (802)
|+-+++.|+||+|||++|+.+|.+++.+++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 457899999999999999999999987653
No 339
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.0037 Score=65.88 Aligned_cols=70 Identities=29% Similarity=0.396 Sum_probs=45.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHhc--C------CCeeEeec-cchhhhhhhhh-------------HHHHHHHHHHHHhcC
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEA--G------VPFFYRAG-SEFEEMFVGVG-------------ARRVRSLFQAAKKKA 450 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~ea--g------~pfi~is~-se~~e~~vG~~-------------~k~vr~lF~~Ar~~a 450 (802)
+.|+.|||||||||+.|-+|+-+ | ..+..++- +++.....|.. .-+-..+....+.+.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 68999999999999999999854 2 22333332 22222111111 112234566678899
Q ss_pred CcEEEEcchhhh
Q 003696 451 PCIIFIDEIDAV 462 (802)
Q Consensus 451 P~ILfIDEIDaL 462 (802)
|.|+++|||...
T Consensus 219 PEViIvDEIGt~ 230 (308)
T COG3854 219 PEVIIVDEIGTE 230 (308)
T ss_pred CcEEEEeccccH
Confidence 999999999655
No 340
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.00 E-value=0.00063 Score=65.60 Aligned_cols=31 Identities=35% Similarity=0.600 Sum_probs=27.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEee
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is 423 (802)
+|+|+|+||+|||++|+.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999887543
No 341
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.00 E-value=0.0037 Score=66.88 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCC
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGV 417 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~ 417 (802)
.-++|.||+|+|||++++.+++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 35999999999999999999987753
No 342
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.96 E-value=0.0047 Score=63.65 Aligned_cols=110 Identities=23% Similarity=0.315 Sum_probs=59.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhh-------hh---hh----------hhHHHHHHHHHHHH
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE-------MF---VG----------VGARRVRSLFQAAK 447 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e-------~~---vG----------~~~k~vr~lF~~Ar 447 (802)
|+-++|+||+|+||||.+-.+|..+ +..+..+++..+.- .| .+ ...+.+++.++.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6789999999999999988888754 44444443332211 01 11 11233445555665
Q ss_pred hcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChh
Q 003696 448 KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPA 508 (802)
Q Consensus 448 ~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~A 508 (802)
...-.+|+||-..... .....+.+|-..++...+..-++|+.++-..+.++..
T Consensus 81 ~~~~D~vlIDT~Gr~~--------~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~ 133 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP--------RDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQA 133 (196)
T ss_dssp HTTSSEEEEEE-SSSS--------THHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHH
T ss_pred hcCCCEEEEecCCcch--------hhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHH
Confidence 5555799998753331 1233333333333333344456667776666655533
No 343
>PRK00625 shikimate kinase; Provisional
Probab=96.96 E-value=0.00075 Score=68.19 Aligned_cols=31 Identities=42% Similarity=0.626 Sum_probs=28.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEee
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is 423 (802)
.|+|+|.||+|||++++.+|..++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 344
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.95 E-value=0.00081 Score=73.63 Aligned_cols=69 Identities=28% Similarity=0.371 Sum_probs=45.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcC-----CCeeEeec-cch-------hhhhhhhhHHHHHHHHHHHHhcCCcEEEEcc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAG-----VPFFYRAG-SEF-------EEMFVGVGARRVRSLFQAAKKKAPCIIFIDE 458 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag-----~pfi~is~-se~-------~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDE 458 (802)
+++|++||+|+||||+++++.+... ..++.+.- .++ .............+++..+....|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 5899999999999999999998752 22332211 111 0101111122466777788888899999999
Q ss_pred hh
Q 003696 459 ID 460 (802)
Q Consensus 459 ID 460 (802)
+-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 74
No 345
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.94 E-value=0.0054 Score=66.01 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=55.5
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcC---CCeeEee-ccchhhh
Q 003696 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRA-GSEFEEM 430 (802)
Q Consensus 355 ~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag---~pfi~is-~se~~e~ 430 (802)
.+++++.-.++..+.|++++. .+ -..+++.||+|+||||+++++..... ..++.+. ..++.-.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~---~~----------~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE---KP----------HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh---cC----------CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 467776555555555544443 11 12489999999999999999977663 2233332 1111100
Q ss_pred -----hhh-hhHHHHHHHHHHHHhcCCcEEEEcchhh
Q 003696 431 -----FVG-VGARRVRSLFQAAKKKAPCIIFIDEIDA 461 (802)
Q Consensus 431 -----~vG-~~~k~vr~lF~~Ar~~aP~ILfIDEIDa 461 (802)
.+. .......++...+....|++|+|+|+..
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 000 1112345566667778899999999853
No 346
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.94 E-value=0.0049 Score=77.47 Aligned_cols=188 Identities=21% Similarity=0.228 Sum_probs=103.6
Q ss_pred CCceEEEEccCCCcHHHH-HHHHHHhcCCCeeEeeccchhhhhhhhhHHHHHHHHHHHHh--------cCC------cEE
Q 003696 390 LPKGILLTGAPGTGKTLL-AKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKK--------KAP------CII 454 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~L-ArALA~eag~pfi~is~se~~e~~vG~~~k~vr~lF~~Ar~--------~aP------~IL 454 (802)
.-++++++||||+|||++ .-++-.+.-..+++++.+.-... ...++-+-+.... .-| -||
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T-----~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVL 1567 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMT-----PSKLSVLERETEYYPNTGVVRLYPKPVVKDLVL 1567 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCC-----HHHHHHHHhhceeeccCCeEEEccCcchhheEE
Confidence 346999999999999985 56677777777887776543221 1122222111110 001 299
Q ss_pred EEcchhhhccccccCCcchHHHHHHHHHHhccccc--------CCCEEEEeecCCCCCCChhhcCCCccce---EEEccC
Q 003696 455 FIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ--------NEGIILMAATNLPDILDPALTRPGRFDR---HIVVPN 523 (802)
Q Consensus 455 fIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~--------~~~VIVIaATN~pe~LD~ALlRpGRFdr---~I~v~l 523 (802)
|.|||. +...+.-.....--.+.+|+ +-.||.. =+++++.|++|.+.+... ..-|-||-+ .+.+..
T Consensus 1568 FcDeIn-Lp~~~~y~~~~vI~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gR-v~~~eRf~r~~v~vf~~y 1644 (3164)
T COG5245 1568 FCDEIN-LPYGFEYYPPTVIVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNPGTDEGR-VKYYERFIRKPVFVFCCY 1644 (3164)
T ss_pred EeeccC-CccccccCCCceEEeeHHHH-HhcccccchhhhHhhhcceEEEccCCCCCCccc-CccHHHHhcCceEEEecC
Confidence 999998 64433322211111122222 2233422 257999999998765430 111224433 677889
Q ss_pred CCHHHHHHHHHHHhccCCCCC-c------------ccH--------HHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCcc
Q 003696 524 PDVRGRQEILELYLQDKPLAD-D------------VDV--------KAIARGTPGFNGADLANLVNIAAIKAAVDGGEKL 582 (802)
Q Consensus 524 Pd~eeR~~ILk~~l~~~~l~~-d------------vdl--------~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~I 582 (802)
|.......|.+.++.+.-+.. . +.+ ....+..-||+|+||-..++. ...++..+.++-
T Consensus 1645 pe~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~-i~~yaeT~~~t~ 1723 (3164)
T COG5245 1645 PELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRA-IFGYAETRIDTP 1723 (3164)
T ss_pred cchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHH-HHhHHhcCCCCC
Confidence 999999999988776532221 1 110 111122357999999999874 334444343443
Q ss_pred CHHH
Q 003696 583 TATE 586 (802)
Q Consensus 583 t~ed 586 (802)
...+
T Consensus 1724 ~~sl 1727 (3164)
T COG5245 1724 DVSL 1727 (3164)
T ss_pred cHHH
Confidence 3333
No 347
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.93 E-value=0.0055 Score=65.66 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=29.1
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHh---cCCCeeEeecc
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGS 425 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~e---ag~pfi~is~s 425 (802)
|.+....++++||||||||+++..+|.+ .|-+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 3344456899999999999999988664 36677777654
No 348
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.011 Score=67.24 Aligned_cols=103 Identities=16% Similarity=0.128 Sum_probs=56.9
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchh----hh---h---------hhhhHHHHHHHHHHHHh-c
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE----EM---F---------VGVGARRVRSLFQAAKK-K 449 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~----e~---~---------vG~~~k~vr~lF~~Ar~-~ 449 (802)
.|+-++|.||+|+||||++..+|..+ |..+..+++..+. +. | +......+.+....++. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 36789999999999999999999865 4445555543331 11 1 01123344444544443 2
Q ss_pred CCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecC
Q 003696 450 APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (802)
Q Consensus 450 aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN 500 (802)
...+||||-..... .....+.++...++...+...++|+.+|.
T Consensus 320 ~~DvVLIDTaGRs~--------kd~~lm~EL~~~lk~~~PdevlLVLsATt 362 (436)
T PRK11889 320 RVDYILIDTAGKNY--------RASETVEEMIETMGQVEPDYICLTLSASM 362 (436)
T ss_pred CCCEEEEeCccccC--------cCHHHHHHHHHHHhhcCCCeEEEEECCcc
Confidence 34688888654432 12344555555444333333345554443
No 349
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.92 E-value=0.0011 Score=67.27 Aligned_cols=70 Identities=26% Similarity=0.381 Sum_probs=43.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhcCC--CeeEeecc-chh-------h-----h-hhhhhHHHHHHHHHHHHhcCCcEE
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGS-EFE-------E-----M-FVGVGARRVRSLFQAAKKKAPCII 454 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~eag~--pfi~is~s-e~~-------e-----~-~vG~~~k~vr~lF~~Ar~~aP~IL 454 (802)
...++|.||+|+||||+++++++.... ..+.+... ++. . . ..+.......+++..+....|.++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 347999999999999999999986531 12222110 110 0 0 001112335566777777889999
Q ss_pred EEcchh
Q 003696 455 FIDEID 460 (802)
Q Consensus 455 fIDEID 460 (802)
+++|+-
T Consensus 105 ~igEir 110 (186)
T cd01130 105 IVGEVR 110 (186)
T ss_pred EEEccC
Confidence 999983
No 350
>PRK13946 shikimate kinase; Provisional
Probab=96.92 E-value=0.0021 Score=65.09 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=30.7
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhcCCCeeEee
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is 423 (802)
.++.|+|.|+||+|||++++.+|..+|.+|+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3568999999999999999999999999988655
No 351
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.91 E-value=0.0056 Score=64.36 Aligned_cols=21 Identities=33% Similarity=0.321 Sum_probs=18.8
Q ss_pred EEEEccCCCcHHHHHHHHHHh
Q 003696 394 ILLTGAPGTGKTLLAKAIAGE 414 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~e 414 (802)
.+|+||||+|||+|+..+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999863
No 352
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.91 E-value=0.004 Score=71.47 Aligned_cols=126 Identities=24% Similarity=0.389 Sum_probs=64.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhhhhHHHHHH-----HHHH--H-HhcCCcEEEEcchhhhc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRS-----LFQA--A-KKKAPCIIFIDEIDAVG 463 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG~~~k~vr~-----lF~~--A-r~~aP~ILfIDEIDaLg 463 (802)
-+|||.|.|||-|+-|.+.+-.-+-+-++ .++- .+.-.|.++..+|+ ++-+ | --....|++|||+|.+-
T Consensus 365 INVLLLGDPgtAKSQlLKFvEkvsPIaVY-TSGK--GSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMr 441 (729)
T KOG0481|consen 365 INVLLLGDPGTAKSQLLKFVEKVSPIAVY-TSGK--GSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMR 441 (729)
T ss_pred eeEEEecCCchhHHHHHHHHHhcCceEEE-ecCC--CcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccC
Confidence 46999999999999999998765443322 2221 01111111211111 0000 0 00123599999999992
Q ss_pred cccccCCcchHHHHHHHH------HHhccc--ccCCCEEEEeecCCCC-----------CC--ChhhcCCCccceEEEcc
Q 003696 464 STRKQWEGHTKKTLHQLL------VEMDGF--EQNEGIILMAATNLPD-----------IL--DPALTRPGRFDRHIVVP 522 (802)
Q Consensus 464 ~~r~~~~~~~~~tLnqLL------~eLDg~--~~~~~VIVIaATN~pe-----------~L--D~ALlRpGRFdr~I~v~ 522 (802)
. . .+-++..-+ ..-.|+ .-|++.-|+||.|.+- .+ -+.+++ |||..+-+.
T Consensus 442 e---~----DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVK 512 (729)
T KOG0481|consen 442 E---D----DRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVK 512 (729)
T ss_pred c---h----hhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEe
Confidence 2 1 111111111 111122 1244556778888642 22 366776 999988886
Q ss_pred CCCHHHH
Q 003696 523 NPDVRGR 529 (802)
Q Consensus 523 lPd~eeR 529 (802)
.--.++|
T Consensus 513 D~h~~~~ 519 (729)
T KOG0481|consen 513 DEHDEER 519 (729)
T ss_pred ccCcchh
Confidence 5433333
No 353
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.90 E-value=0.00085 Score=67.01 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=28.3
Q ss_pred EEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhh
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 430 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~ 430 (802)
|+++||||+||||+|+.+|...|.+ +++.+++...
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHHHH
Confidence 7899999999999999999999854 4555555443
No 354
>PRK13695 putative NTPase; Provisional
Probab=96.87 E-value=0.0059 Score=60.94 Aligned_cols=23 Identities=48% Similarity=0.567 Sum_probs=20.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHhc
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~ea 415 (802)
-++|+|++|+|||++++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988764
No 355
>PRK13949 shikimate kinase; Provisional
Probab=96.85 E-value=0.001 Score=66.82 Aligned_cols=31 Identities=45% Similarity=0.618 Sum_probs=28.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEee
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is 423 (802)
.|+|+||||+|||++++.+|+.++.+|+..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 6999999999999999999999999988765
No 356
>PLN02200 adenylate kinase family protein
Probab=96.84 E-value=0.0014 Score=69.19 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=34.0
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhh
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 430 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~ 430 (802)
+.+.|.-+++.||||+||||+|+.+|...|.+ +++.+++...
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 45567789999999999999999999999865 5666666543
No 357
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.84 E-value=0.0045 Score=62.18 Aligned_cols=73 Identities=26% Similarity=0.356 Sum_probs=41.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHhc-------------CCCeeEeeccchh----hhh---------------hh-------
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEA-------------GVPFFYRAGSEFE----EMF---------------VG------- 433 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~ea-------------g~pfi~is~se~~----e~~---------------vG------- 433 (802)
-++|+||||+|||+++..++... +.++++++...-. ..+ ..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 48999999999999999997754 2356666543221 110 00
Q ss_pred ----------hhHHHHHHHHHHHHh-cCCcEEEEcchhhhccc
Q 003696 434 ----------VGARRVRSLFQAAKK-KAPCIIFIDEIDAVGST 465 (802)
Q Consensus 434 ----------~~~k~vr~lF~~Ar~-~aP~ILfIDEIDaLg~~ 465 (802)
.....+..+.+.++. ..|.+|+||-+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 001223445555566 57899999999999765
No 358
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.84 E-value=0.01 Score=73.35 Aligned_cols=151 Identities=17% Similarity=0.228 Sum_probs=81.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchh---hhhh------------hh---------------hHHHHHH
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE---EMFV------------GV---------------GARRVRS 441 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~---e~~v------------G~---------------~~k~vr~ 441 (802)
+-++++||+|.|||+++...+...+ ++..++...-. ..|. +. ....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 3699999999999999999987766 65555442110 0010 00 0011222
Q ss_pred HHHHHHh-cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCCh-hhcCCCccceEE
Q 003696 442 LFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP-ALTRPGRFDRHI 519 (802)
Q Consensus 442 lF~~Ar~-~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~-ALlRpGRFdr~I 519 (802)
++..... ..|.+|+||++|.+.. ......+..|+..+ .....+|| ++.....++- .+... +..+
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~------~~~~~~l~~l~~~~----~~~~~lv~-~sR~~~~~~~~~l~~~---~~~~ 177 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITN------PEIHEAMRFFLRHQ----PENLTLVV-LSRNLPPLGIANLRVR---DQLL 177 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCC------hHHHHHHHHHHHhC----CCCeEEEE-EeCCCCCCchHhHHhc---Ccce
Confidence 3333333 5789999999998832 11223444444332 22334444 4443212221 11111 2234
Q ss_pred Ecc----CCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCC
Q 003696 520 VVP----NPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFN 559 (802)
Q Consensus 520 ~v~----lPd~eeR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~S 559 (802)
.+. .-+.++-.+++...+... + +..++..|.+.|.|+.
T Consensus 178 ~l~~~~l~f~~~e~~~ll~~~~~~~-~-~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 178 EIGSQQLAFDHQEAQQFFDQRLSSP-I-EAAESSRLCDDVEGWA 219 (903)
T ss_pred ecCHHhCCCCHHHHHHHHHhccCCC-C-CHHHHHHHHHHhCChH
Confidence 444 557888888887654322 2 3445678888888853
No 359
>PRK14532 adenylate kinase; Provisional
Probab=96.83 E-value=0.001 Score=66.93 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=29.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhh
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 430 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~ 430 (802)
.|+|.||||+||||+|+.+|...|.+++ +..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 5899999999999999999999986654 55555444
No 360
>PRK14531 adenylate kinase; Provisional
Probab=96.82 E-value=0.0012 Score=66.62 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=29.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchh
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~ 428 (802)
+.|+++||||+||||+++.+|...|.+++. ..++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 469999999999999999999999877654 44444
No 361
>PRK13948 shikimate kinase; Provisional
Probab=96.82 E-value=0.0023 Score=65.23 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=34.7
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhh
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVG 433 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG 433 (802)
+.|..|+|.|.+|+|||++++.+|..++.+|+..+ .+.+...|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 45688999999999999999999999999998554 34444333
No 362
>PLN02674 adenylate kinase
Probab=96.81 E-value=0.0072 Score=64.48 Aligned_cols=40 Identities=28% Similarity=0.351 Sum_probs=31.4
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhh
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 430 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~ 430 (802)
+.+..++|.||||+||||+++.+|...|++. ++..++...
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~GdllR~ 68 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRA 68 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHHHH
Confidence 3456799999999999999999999998654 455555443
No 363
>PHA02774 E1; Provisional
Probab=96.81 E-value=0.0043 Score=73.03 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=27.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCCCee-Eeec
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFF-YRAG 424 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~pfi-~is~ 424 (802)
.+++|+||||||||++|-+|++.++...+ +++.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 48999999999999999999999865443 3553
No 364
>PRK06217 hypothetical protein; Validated
Probab=96.80 E-value=0.0012 Score=66.70 Aligned_cols=31 Identities=35% Similarity=0.552 Sum_probs=28.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEee
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is 423 (802)
.|+|.|+||+||||++++++..+|.|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 365
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.78 E-value=0.0044 Score=60.78 Aligned_cols=34 Identities=35% Similarity=0.666 Sum_probs=28.2
Q ss_pred EEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccch
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 427 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~ 427 (802)
++|+|+||+|||++|+.++..+ +.+.+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 7899999999999999999987 666666665444
No 366
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.78 E-value=0.0024 Score=71.18 Aligned_cols=69 Identities=23% Similarity=0.327 Sum_probs=43.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCC----CeeEeec-cchh---------hhhhhhhHHHHHHHHHHHHhcCCcEEEEc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGV----PFFYRAG-SEFE---------EMFVGVGARRVRSLFQAAKKKAPCIIFID 457 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~----pfi~is~-se~~---------e~~vG~~~k~vr~lF~~Ar~~aP~ILfID 457 (802)
..++++||+|+||||+.+++.+...- .++.+.- .++. ..-+|.......+.++.+-...|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 46899999999999999999986642 2232211 1111 00112212234555666667899999999
Q ss_pred chh
Q 003696 458 EID 460 (802)
Q Consensus 458 EID 460 (802)
|+.
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 984
No 367
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.77 E-value=0.0052 Score=67.21 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=62.0
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHhc---------CCCeeEeeccc-hhh-hh------hhhhH--------------
Q 003696 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE-FEE-MF------VGVGA-------------- 436 (802)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArALA~ea---------g~pfi~is~se-~~e-~~------vG~~~-------------- 436 (802)
.+...-++++||||+|||+++..+|-.+ +...+|++..+ |.. .. .|...
T Consensus 92 i~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~~ 171 (310)
T TIGR02236 92 IETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAYN 171 (310)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecCC
Confidence 3444557899999999999999998763 33778887655 110 00 01000
Q ss_pred -----HHHHHHHHHHHhc--CCcEEEEcchhhhccccccCCc---chHHHHHHHHHHhcccccCCCEEEEeecC
Q 003696 437 -----RRVRSLFQAAKKK--APCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (802)
Q Consensus 437 -----k~vr~lF~~Ar~~--aP~ILfIDEIDaLg~~r~~~~~---~~~~tLnqLL~eLDg~~~~~~VIVIaATN 500 (802)
..+..+.+..... .+++|+||=|-++....-...+ ..++.+++++..|..+....++.|+.+..
T Consensus 172 ~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnq 245 (310)
T TIGR02236 172 SNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 245 (310)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCchhHHHHHHHHHHHHHHHHHHHHHhCcEEEEece
Confidence 0122223333333 3679999998887432111111 12234555555555554556666665543
No 368
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.77 E-value=0.011 Score=57.48 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=28.0
Q ss_pred EEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhh
Q 003696 396 LTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 432 (802)
Q Consensus 396 L~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~v 432 (802)
|.||||+|||++|+.||.+.|. .+++..++.....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 6899999999999999999875 5666666655443
No 369
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.76 E-value=0.0096 Score=61.85 Aligned_cols=38 Identities=34% Similarity=0.452 Sum_probs=28.0
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHh---cCCCeeEeec
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAG 424 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~e---ag~pfi~is~ 424 (802)
|......++++||||+|||+++..++.+ .+.+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3444567999999999999999987643 2556666664
No 370
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.76 E-value=0.044 Score=60.39 Aligned_cols=125 Identities=23% Similarity=0.350 Sum_probs=65.5
Q ss_pred HHHHHHHHh--c-CCcEEEEcchhhhccccccCCc-------chHHHHHHHHHHhccc-ccCCCEEE--EeecCC---CC
Q 003696 440 RSLFQAAKK--K-APCIIFIDEIDAVGSTRKQWEG-------HTKKTLHQLLVEMDGF-EQNEGIIL--MAATNL---PD 503 (802)
Q Consensus 440 r~lF~~Ar~--~-aP~ILfIDEIDaLg~~r~~~~~-------~~~~tLnqLL~eLDg~-~~~~~VIV--IaATN~---pe 503 (802)
..++++.+. . -|.++-||++.++.....-.+. +.-.....++..+.+- .-..+.+| +++|.. +.
T Consensus 143 ~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~ 222 (309)
T PF10236_consen 143 QALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPK 222 (309)
T ss_pred HHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccC
Confidence 334444433 2 4778889999999775321111 1122333444443322 22344444 555543 22
Q ss_pred --CCChhhcCC-C-----ccc-------------eEEEccCCCHHHHHHHHHHHhccCCCCCccc----HHHHHhcCCCC
Q 003696 504 --ILDPALTRP-G-----RFD-------------RHIVVPNPDVRGRQEILELYLQDKPLADDVD----VKAIARGTPGF 558 (802)
Q Consensus 504 --~LD~ALlRp-G-----RFd-------------r~I~v~lPd~eeR~~ILk~~l~~~~l~~dvd----l~~LA~~t~G~ 558 (802)
.++.++... + -|. ..|.++..+.+|-..+++.|....-+....+ .+.+.-. .|.
T Consensus 223 ~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~-s~G 301 (309)
T PF10236_consen 223 SPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLS-SNG 301 (309)
T ss_pred CccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHh-cCC
Confidence 455555431 1 121 1678899999999999999887655443111 2333332 244
Q ss_pred CHHHHHH
Q 003696 559 NGADLAN 565 (802)
Q Consensus 559 SgaDL~n 565 (802)
+++++..
T Consensus 302 Np~el~k 308 (309)
T PF10236_consen 302 NPRELEK 308 (309)
T ss_pred CHHHhcc
Confidence 6766653
No 371
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.75 E-value=0.0082 Score=62.13 Aligned_cols=35 Identities=34% Similarity=0.574 Sum_probs=28.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e 429 (802)
-|+++||||+|||++|+.+|...|++.+. ..++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~r 36 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDMLR 36 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccHH
Confidence 38999999999999999999999976655 444443
No 372
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.75 E-value=0.0013 Score=66.05 Aligned_cols=34 Identities=35% Similarity=0.606 Sum_probs=28.1
Q ss_pred EEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e 429 (802)
|+|+||||+|||++|+.+|...|++++. ..++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHHH
Confidence 7999999999999999999998876654 445543
No 373
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.75 E-value=0.0013 Score=63.70 Aligned_cols=33 Identities=36% Similarity=0.787 Sum_probs=27.2
Q ss_pred EEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchh
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~eag~pfi~is~se~~ 428 (802)
++|+|+||+||||+|+.++...+.+++ +...+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence 689999999999999999999887665 444443
No 374
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.74 E-value=0.0047 Score=61.27 Aligned_cols=104 Identities=17% Similarity=0.167 Sum_probs=56.8
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhcCC--CeeEeeccchhh--------hhhh-----hhHHHHHHHHHHHHhcCCcEE
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSEFEE--------MFVG-----VGARRVRSLFQAAKKKAPCII 454 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~eag~--pfi~is~se~~e--------~~vG-----~~~k~vr~lF~~Ar~~aP~IL 454 (802)
....+.|.||+|+|||+|.+.+++.... --+.+++.++.. ..++ .+..+.+-.+..|-...|.++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 3346889999999999999999986521 012222222110 0011 011233445555666789999
Q ss_pred EEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCC
Q 003696 455 FIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (802)
Q Consensus 455 fIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe 503 (802)
++||--.-. +......+.+++..+. .+ +..+|.+|+.++
T Consensus 105 llDEP~~~L------D~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~ 143 (163)
T cd03216 105 ILDEPTAAL------TPAEVERLFKVIRRLR---AQ-GVAVIFISHRLD 143 (163)
T ss_pred EEECCCcCC------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHH
Confidence 999965332 1223444555554442 23 334445666544
No 375
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.74 E-value=0.003 Score=70.22 Aligned_cols=70 Identities=23% Similarity=0.347 Sum_probs=45.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhcCC--CeeEee-ccchh--------hhh-----hhhhHHHHHHHHHHHHhcCCcEE
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRA-GSEFE--------EMF-----VGVGARRVRSLFQAAKKKAPCII 454 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~eag~--pfi~is-~se~~--------e~~-----vG~~~k~vr~lF~~Ar~~aP~IL 454 (802)
.+++|++||+|+||||+++++.....- .++.+. ..++. ..+ .+...-...+++..+....|+.|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 358999999999999999999987642 222221 01110 000 11112235677888888899999
Q ss_pred EEcchh
Q 003696 455 FIDEID 460 (802)
Q Consensus 455 fIDEID 460 (802)
++.|+-
T Consensus 240 ivGEiR 245 (332)
T PRK13900 240 IVGELR 245 (332)
T ss_pred EEEecC
Confidence 999985
No 376
>PRK08233 hypothetical protein; Provisional
Probab=96.73 E-value=0.0061 Score=60.41 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=26.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcC-CCeeEeec
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAG-VPFFYRAG 424 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag-~pfi~is~ 424 (802)
.-|.+.|+||+||||+|+.++..++ .+++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 4578899999999999999999985 44554443
No 377
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.73 E-value=0.006 Score=67.12 Aligned_cols=114 Identities=13% Similarity=0.116 Sum_probs=62.9
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHhc---------CCCeeEeeccch-h-hhh------hhhh--------------
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF-E-EMF------VGVG-------------- 435 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~ea---------g~pfi~is~se~-~-e~~------vG~~-------------- 435 (802)
|.+...-++++||||+|||+++..+|-.+ +...+|++..+- . +.. .|..
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 34445568899999999999999998653 346777776541 1 000 0000
Q ss_pred -----HHHHHHHHHHHHh-cCCcEEEEcchhhhccccccCC-c--chHHHHHHHHHHhcccccCCCEEEEeecC
Q 003696 436 -----ARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWE-G--HTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (802)
Q Consensus 436 -----~k~vr~lF~~Ar~-~aP~ILfIDEIDaLg~~r~~~~-~--~~~~tLnqLL~eLDg~~~~~~VIVIaATN 500 (802)
...+..+...... ..+++|+||=|-++....-... . ..++.+.+++..|..+-...++.||.++.
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 0011122222233 4567999999998854311111 1 11334556555555554455666666544
No 378
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.72 E-value=0.0068 Score=67.63 Aligned_cols=23 Identities=57% Similarity=0.741 Sum_probs=21.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHhc
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~ea 415 (802)
-+++.|.||||||.+|-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 379
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.72 E-value=0.0017 Score=67.58 Aligned_cols=23 Identities=48% Similarity=0.590 Sum_probs=18.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHhc
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~ea 415 (802)
-+.+.||.|||||+||-+.|-++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 68999999999999999998755
No 380
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.71 E-value=0.015 Score=57.85 Aligned_cols=35 Identities=34% Similarity=0.396 Sum_probs=27.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccch
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 427 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~ 427 (802)
-++++||||+|||++++.+|..+ +..+..+++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 37899999999999999998765 666777776543
No 381
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.0012 Score=65.22 Aligned_cols=31 Identities=42% Similarity=0.751 Sum_probs=28.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEee
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is 423 (802)
+||++|-||||||+++..+|...+.+++.++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 7999999999999999999999998887654
No 382
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.71 E-value=0.0043 Score=62.79 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=29.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCCCeeEee
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~pfi~is 423 (802)
+.|.|.|++|+||||+.|++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998654
No 383
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.013 Score=66.90 Aligned_cols=113 Identities=15% Similarity=0.267 Sum_probs=59.0
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhc----CCCeeEeeccchhhh-------h---hhh---hHHHHHHHHHHHHhcCCc
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEM-------F---VGV---GARRVRSLFQAAKKKAPC 452 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~ea----g~pfi~is~se~~e~-------~---vG~---~~k~vr~lF~~Ar~~aP~ 452 (802)
.+.-++|.||+|+||||++..+|... |.....+++..+... | .|. ....+.++...++.....
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 35568999999999999999999754 444444544432211 1 011 112233344444444557
Q ss_pred EEEEcchhhhccccccCCcchHHHHHHHHHHhccc---ccCCCEEEEeecCCCCCCChhhc
Q 003696 453 IIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF---EQNEGIILMAATNLPDILDPALT 510 (802)
Q Consensus 453 ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~---~~~~~VIVIaATN~pe~LD~ALl 510 (802)
+|+||=..... .....+..|...++.+ .....++|+.+|...+.+.....
T Consensus 302 ~VLIDTaGr~~--------rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 302 LILIDTAGYSH--------RNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred EEEEeCCCCCc--------cCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 88887532221 1123344444333322 12245677777766555554443
No 384
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.68 E-value=0.018 Score=59.80 Aligned_cols=40 Identities=28% Similarity=0.272 Sum_probs=29.8
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccc
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 426 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se 426 (802)
|.+...-+++.|+||+|||+++..++.+. |.+.++++..+
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 33344568999999999999999887543 77777776543
No 385
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.67 E-value=0.013 Score=57.03 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=18.3
Q ss_pred ceEEEEccCCCcHHH-HHHHHHHhc
Q 003696 392 KGILLTGAPGTGKTL-LAKAIAGEA 415 (802)
Q Consensus 392 kgVLL~GPPGTGKT~-LArALA~ea 415 (802)
+.+++.||+|||||+ ++..+....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 479999999999999 555554443
No 386
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.66 E-value=0.0014 Score=64.47 Aligned_cols=32 Identities=34% Similarity=0.707 Sum_probs=26.5
Q ss_pred EEEEccCCCcHHHHHHHHHHhcCCCeeEeeccch
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~eag~pfi~is~se~ 427 (802)
++|.||||+||||+|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999987665 44444
No 387
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.65 E-value=0.0021 Score=67.92 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=28.9
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhcCCCeeEe
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~eag~pfi~i 422 (802)
.|..|+|.||||+||||+|+.+|...|++++.+
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 455699999999999999999999999877654
No 388
>PRK06547 hypothetical protein; Provisional
Probab=96.65 E-value=0.002 Score=65.05 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=30.3
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEee
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is 423 (802)
..|.-|+++|++|+|||++|+.++...+++++.++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 45668999999999999999999999998877643
No 389
>PRK04328 hypothetical protein; Provisional
Probab=96.62 E-value=0.016 Score=61.70 Aligned_cols=38 Identities=34% Similarity=0.503 Sum_probs=28.1
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHh---cCCCeeEeec
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAG 424 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~e---ag~pfi~is~ 424 (802)
|.+....+|++||||||||+|+..++.+ .|-+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 3444566899999999999998877543 3667777665
No 390
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.62 E-value=0.0092 Score=69.55 Aligned_cols=75 Identities=27% Similarity=0.212 Sum_probs=52.3
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhhhh----------------------------hHH
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGV----------------------------GAR 437 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~vG~----------------------------~~k 437 (802)
.....+|+.||||||||+|+..++.+. |-+.+|++..+-.+.+... ...
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~ 340 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLED 340 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHH
Confidence 333568999999999999999998754 6677777765432221100 033
Q ss_pred HHHHHHHHHHhcCCcEEEEcchhhhc
Q 003696 438 RVRSLFQAAKKKAPCIIFIDEIDAVG 463 (802)
Q Consensus 438 ~vr~lF~~Ar~~aP~ILfIDEIDaLg 463 (802)
.+..+.+......|.+|+||-+..+.
T Consensus 341 ~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 341 HLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 44556666677789999999999884
No 391
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.62 E-value=0.0021 Score=63.73 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=28.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCCCeeEe
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~pfi~i 422 (802)
+.++|+|+||+|||++++.+|..+|.||+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 3689999999999999999999999998754
No 392
>PRK14530 adenylate kinase; Provisional
Probab=96.61 E-value=0.0019 Score=66.81 Aligned_cols=30 Identities=43% Similarity=0.593 Sum_probs=26.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEe
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~i 422 (802)
.|+|.||||+||||+++.+|...+.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999776643
No 393
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.61 E-value=0.009 Score=60.58 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=18.2
Q ss_pred EEEEccCCCcHHHHHHHHH
Q 003696 394 ILLTGAPGTGKTLLAKAIA 412 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA 412 (802)
++|+||.|.|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 394
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.60 E-value=0.017 Score=58.20 Aligned_cols=70 Identities=26% Similarity=0.314 Sum_probs=44.7
Q ss_pred EEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhh-hh----------------hhhHHHHHHHHHHHHhcCCcEEEE
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FV----------------GVGARRVRSLFQAAKKKAPCIIFI 456 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~-~v----------------G~~~k~vr~lF~~Ar~~aP~ILfI 456 (802)
+|++|+||+|||++|..++...+.+.+|+....-.+. +. .+....+.+.+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 6899999999999999999887778877754432111 00 00112233333221 14679999
Q ss_pred cchhhhccc
Q 003696 457 DEIDAVGST 465 (802)
Q Consensus 457 DEIDaLg~~ 465 (802)
|-+..+...
T Consensus 80 Dclt~~~~n 88 (169)
T cd00544 80 DCLTLWVTN 88 (169)
T ss_pred EcHhHHHHH
Confidence 999887543
No 395
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.60 E-value=0.009 Score=65.97 Aligned_cols=111 Identities=15% Similarity=0.163 Sum_probs=61.2
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhc---------CCCeeEeeccc-hh-hhh------hhh----------------h
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE-FE-EMF------VGV----------------G 435 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~ea---------g~pfi~is~se-~~-e~~------vG~----------------~ 435 (802)
..-.-+.|+||||+|||+++..+|-.. +...+|++... |. +.. .|. .
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCCH
Confidence 333457799999999999998877422 45677776544 11 100 000 0
Q ss_pred ---HHHHHHHHHHHHhcCCcEEEEcchhhhccccccCC---cchHHHHHHHHHHhcccccCCCEEEEeec
Q 003696 436 ---ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAAT 499 (802)
Q Consensus 436 ---~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~---~~~~~tLnqLL~eLDg~~~~~~VIVIaAT 499 (802)
...+..+-.......+.+|+||-|-++....-... ...++.+++++..|..+....++.||.+.
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 01112222223345688999999998865321111 11233466666666655555666666543
No 396
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.59 E-value=0.004 Score=68.37 Aligned_cols=71 Identities=24% Similarity=0.391 Sum_probs=45.2
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhcCC--CeeEee-ccchh-------hhh-----hhhhHHHHHHHHHHHHhcCCcEE
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRA-GSEFE-------EMF-----VGVGARRVRSLFQAAKKKAPCII 454 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~eag~--pfi~is-~se~~-------e~~-----vG~~~k~vr~lF~~Ar~~aP~IL 454 (802)
...++++.||+|+||||+++++++.... ..+.+. ..++. ... .+...-.+.+++..+....|.+|
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~i 222 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRI 222 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeE
Confidence 3458999999999999999999987631 122221 01110 000 01112235567777778899999
Q ss_pred EEcchh
Q 003696 455 FIDEID 460 (802)
Q Consensus 455 fIDEID 460 (802)
++||+-
T Consensus 223 i~gE~r 228 (308)
T TIGR02788 223 ILGELR 228 (308)
T ss_pred EEeccC
Confidence 999985
No 397
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.58 E-value=0.0077 Score=67.99 Aligned_cols=69 Identities=26% Similarity=0.316 Sum_probs=44.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcC-----CCeeEeec-cchh-----------hhhhhhhHHHHHHHHHHHHhcCCcEEE
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAG-----VPFFYRAG-SEFE-----------EMFVGVGARRVRSLFQAAKKKAPCIIF 455 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag-----~pfi~is~-se~~-----------e~~vG~~~k~vr~lF~~Ar~~aP~ILf 455 (802)
.+|++||+|+||||+++++.+... ...+.+.- .++. ..-+|.......+....+....|++|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999988762 23333321 1110 111122222344566667778999999
Q ss_pred Ecchhh
Q 003696 456 IDEIDA 461 (802)
Q Consensus 456 IDEIDa 461 (802)
++|+-.
T Consensus 231 vGEiRd 236 (372)
T TIGR02525 231 VGEIRD 236 (372)
T ss_pred eCCCCC
Confidence 999853
No 398
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.58 E-value=0.0058 Score=66.03 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=29.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e 429 (802)
++-++|.|||||||||+|+.++.+.. .++.++..++..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~ 39 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQ 39 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHH
Confidence 45789999999999999999999983 345555555543
No 399
>PRK10867 signal recognition particle protein; Provisional
Probab=96.58 E-value=0.027 Score=64.83 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=48.1
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHhc----CCCeeEeeccchhhhh---------------h-----hhhHHHHHHHH
Q 003696 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEMF---------------V-----GVGARRVRSLF 443 (802)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArALA~ea----g~pfi~is~se~~e~~---------------v-----G~~~k~vr~lF 443 (802)
...|.-++++||+|+||||++..+|..+ |..+..+++..+.... . .......++..
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 3457889999999999999887777643 6666666665432210 0 01123334455
Q ss_pred HHHHhcCCcEEEEcchhhh
Q 003696 444 QAAKKKAPCIIFIDEIDAV 462 (802)
Q Consensus 444 ~~Ar~~aP~ILfIDEIDaL 462 (802)
..++.....+|+||=...+
T Consensus 177 ~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHhcCCCEEEEeCCCCc
Confidence 5666666779998876544
No 400
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.56 E-value=0.0029 Score=70.04 Aligned_cols=69 Identities=22% Similarity=0.333 Sum_probs=44.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhc-----CCCeeEee-ccchhhh------hhhhhHHHHHHHHHHHHhcCCcEEEEcch
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRA-GSEFEEM------FVGVGARRVRSLFQAAKKKAPCIIFIDEI 459 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ea-----g~pfi~is-~se~~e~------~vG~~~k~vr~lF~~Ar~~aP~ILfIDEI 459 (802)
+++|++|++|+||||+++++.... +..++.+. ..++.-. +.....-...+++..+-...|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 589999999999999999999875 22233322 1121100 00111123566777778889999999998
Q ss_pred h
Q 003696 460 D 460 (802)
Q Consensus 460 D 460 (802)
-
T Consensus 225 R 225 (323)
T PRK13833 225 R 225 (323)
T ss_pred C
Confidence 3
No 401
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.56 E-value=0.0029 Score=70.04 Aligned_cols=70 Identities=24% Similarity=0.352 Sum_probs=45.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhc-----CCCeeEee-ccchhh---h---hhhhhHHHHHHHHHHHHhcCCcEEEEcc
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRA-GSEFEE---M---FVGVGARRVRSLFQAAKKKAPCIIFIDE 458 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~ea-----g~pfi~is-~se~~e---~---~vG~~~k~vr~lF~~Ar~~aP~ILfIDE 458 (802)
.++++++||+|+|||+++++++.+. ...++.+. ..++.- . +.....-...+++..+-...|+.|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 3589999999999999999999863 11222211 111110 0 0001122456788888889999999999
Q ss_pred hh
Q 003696 459 ID 460 (802)
Q Consensus 459 ID 460 (802)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 84
No 402
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.55 E-value=0.0025 Score=64.07 Aligned_cols=34 Identities=24% Similarity=0.530 Sum_probs=30.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhcCCCeeEeec
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 424 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~ 424 (802)
++.|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3479999999999999999999999999887653
No 403
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0053 Score=60.10 Aligned_cols=104 Identities=24% Similarity=0.378 Sum_probs=56.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCCC--eeEeeccchhh-------h---h---hhhhHHHHHHHHHHHHhcCCcEEEE
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGVP--FFYRAGSEFEE-------M---F---VGVGARRVRSLFQAAKKKAPCIIFI 456 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~p--fi~is~se~~e-------~---~---vG~~~k~vr~lF~~Ar~~aP~ILfI 456 (802)
.-+.|.||.|+|||+|++++++..... -+++++..... . | ...+ .+.+-.+..+-...|.++++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G-~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGG-QRQRVALARALLLNPDLLLL 104 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHH-HHHHHHHHHHHhcCCCEEEE
Confidence 468999999999999999999876321 12333322111 0 0 1112 22233344455567899999
Q ss_pred cchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCC
Q 003696 457 DEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILD 506 (802)
Q Consensus 457 DEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD 506 (802)
||...=.. ......+..++..+ ... +..+|.+|+.++.+.
T Consensus 105 DEp~~~lD------~~~~~~l~~~l~~~---~~~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 105 DEPTSGLD------PASRERLLELLREL---AEE-GRTVIIVTHDPELAE 144 (157)
T ss_pred eCCCcCCC------HHHHHHHHHHHHHH---HHC-CCEEEEEeCCHHHHH
Confidence 99864321 12233444444443 233 234455666544433
No 404
>PRK13764 ATPase; Provisional
Probab=96.54 E-value=0.0036 Score=74.50 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=41.1
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhcCC---CeeEee-ccch-----hhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhh
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEAGV---PFFYRA-GSEF-----EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 461 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~eag~---pfi~is-~se~-----~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDa 461 (802)
.+++|++||||+||||++++++..+.. .+..+. ..++ ...|.... .........+-...|++|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~-~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLE-GSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeecc-ccHHHHHHHHHhhCCCEEEECCCCC
Confidence 468999999999999999999987642 221221 1111 11110000 0112222333456799999999854
No 405
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.53 E-value=0.0066 Score=66.73 Aligned_cols=35 Identities=34% Similarity=0.551 Sum_probs=30.9
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEe
Q 003696 388 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (802)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~i 422 (802)
..++..|.|+|+||+|||++++.+|..+|.+|+.+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 34556899999999999999999999999999943
No 406
>PRK06696 uridine kinase; Validated
Probab=96.53 E-value=0.0049 Score=64.25 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=33.4
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchh
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 428 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~ 428 (802)
.|.-|.+.|++|+||||+|+.|+..+ |.+++.++..+|.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 46689999999999999999999988 6788877776664
No 407
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.52 E-value=0.0083 Score=60.91 Aligned_cols=69 Identities=26% Similarity=0.189 Sum_probs=40.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCCC--eeEeeccch----hhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhh
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGVP--FFYRAGSEF----EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 461 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~p--fi~is~se~----~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDa 461 (802)
.-+.|.||.|+|||||++.+++..... -+.+++..+ .......+ .+.+-.+..+-...|.++++||--.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgG-q~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGG-ELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHH-HHHHHHHHHHHhcCCCEEEEECCcc
Confidence 358899999999999999999864210 111222111 00001112 2333344555557899999999754
No 408
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.49 E-value=0.01 Score=66.41 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=59.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhc---------CCCeeEeeccc-hh-----hhh--hhhh-------------------
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE-FE-----EMF--VGVG------------------- 435 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ea---------g~pfi~is~se-~~-----e~~--vG~~------------------- 435 (802)
.-..|+||||||||+|+..+|-.. +...+|++... |. ... .|..
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~~e~~ 206 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQ 206 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCCHHHH
Confidence 446799999999999999887432 24567776543 10 000 0000
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcchhhhccccccCC---cchHHHHHHHHHHhcccccCCCEEEEeec
Q 003696 436 ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAAT 499 (802)
Q Consensus 436 ~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~---~~~~~tLnqLL~eLDg~~~~~~VIVIaAT 499 (802)
...+..+-.......+.+|+||-|-++....-... ...++.+++++..|..+....++.||.+.
T Consensus 207 ~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 207 YNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 01112222223345688999999998865321111 12234466666666555455566665543
No 409
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.49 E-value=0.01 Score=64.46 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=29.6
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhc----C-CCeeEeeccch
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEA----G-VPFFYRAGSEF 427 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~ea----g-~pfi~is~se~ 427 (802)
.++.++|+||+|+||||++..+|..+ | ..+..+++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 45689999999999999999998755 3 56666666543
No 410
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.48 E-value=0.0042 Score=64.87 Aligned_cols=135 Identities=21% Similarity=0.240 Sum_probs=65.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhh-hhhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCc
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG 471 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e-~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~ 471 (802)
-++|+||+|||||.+|-++|+..|.|++..+.-..-. .-+|.+..... ...+-.=+|+||-..-- +.-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~------el~~~~RiyL~~r~l~~-----G~i 71 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPS------ELKGTRRIYLDDRPLSD-----GII 71 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SG------GGTT-EEEES----GGG------S-
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHH------HHcccceeeeccccccC-----CCc
Confidence 4789999999999999999999999999887654432 22332211111 11111237777643321 112
Q ss_pred chHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcC---CCccce-EEEccCCCHHHHHHHHHHHhccC
Q 003696 472 HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTR---PGRFDR-HIVVPNPDVRGRQEILELYLQDK 540 (802)
Q Consensus 472 ~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlR---pGRFdr-~I~v~lPd~eeR~~ILk~~l~~~ 540 (802)
...+....|+..++.+....++|+=+-+. ..|..-... .-.|.. +..++.||.+.-..-.+...++.
T Consensus 72 ~a~ea~~~Li~~v~~~~~~~~~IlEGGSI--SLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~M 142 (233)
T PF01745_consen 72 NAEEAHERLISEVNSYSAHGGLILEGGSI--SLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQM 142 (233)
T ss_dssp -HHHHHHHHHHHHHTTTTSSEEEEEE--H--HHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccccCceEEeCchH--HHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHh
Confidence 34566777888888887755555544432 111111111 013444 44667888887766655555543
No 411
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.47 E-value=0.016 Score=67.76 Aligned_cols=95 Identities=20% Similarity=0.229 Sum_probs=57.1
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCce-EEEEccCCCcHHHHHHHHHHhcC---CCeeEeec-cch
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKG-ILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAG-SEF 427 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~Pkg-VLL~GPPGTGKT~LArALA~eag---~pfi~is~-se~ 427 (802)
...+|+++.-.++..+.|+.++. .|.| +|++||+|+||||+..++..+.+ ..++.+.- -++
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~--------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR--------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 34578887666666666666553 2345 78999999999999998877664 23443321 111
Q ss_pred hhhh-----hhh-hHHHHHHHHHHHHhcCCcEEEEcchhh
Q 003696 428 EEMF-----VGV-GARRVRSLFQAAKKKAPCIIFIDEIDA 461 (802)
Q Consensus 428 ~e~~-----vG~-~~k~vr~lF~~Ar~~aP~ILfIDEIDa 461 (802)
.-.. +.. ...........+-...|+||+|.|+-.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1000 000 001233445555668899999999853
No 412
>PRK13808 adenylate kinase; Provisional
Probab=96.46 E-value=0.012 Score=65.35 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=27.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchh
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~ 428 (802)
-|+|+||||+|||++++.||...|++.+ +..++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~i--s~gdlL 35 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQL--STGDML 35 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--cccHHH
Confidence 3899999999999999999999987554 444544
No 413
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.46 E-value=0.0048 Score=68.98 Aligned_cols=70 Identities=26% Similarity=0.404 Sum_probs=44.5
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhcCC--CeeEee-ccchhh-------h-h----hhhhHHHHHHHHHHHHhcCCcEEE
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRA-GSEFEE-------M-F----VGVGARRVRSLFQAAKKKAPCIIF 455 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~eag~--pfi~is-~se~~e-------~-~----vG~~~k~vr~lF~~Ar~~aP~ILf 455 (802)
.+++|++||+|+||||+++++++.... .++.+. ..++.- . + .+...-...+++..+....|..|+
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Ii 241 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRIL 241 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEE
Confidence 358999999999999999999987632 222211 011100 0 0 011122355677777788899999
Q ss_pred Ecchh
Q 003696 456 IDEID 460 (802)
Q Consensus 456 IDEID 460 (802)
+.|+-
T Consensus 242 vGEiR 246 (344)
T PRK13851 242 LGEMR 246 (344)
T ss_pred EEeeC
Confidence 99874
No 414
>PRK14528 adenylate kinase; Provisional
Probab=96.45 E-value=0.0029 Score=64.34 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=26.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEe
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~i 422 (802)
.+++.||||+|||++++.+|...|.+.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 589999999999999999999999877653
No 415
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.44 E-value=0.024 Score=61.39 Aligned_cols=38 Identities=32% Similarity=0.487 Sum_probs=29.2
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeecc
Q 003696 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 425 (802)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~s 425 (802)
...|+-++|+||+|+||||++..+|..+ |..+..+++.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3457789999999999999999998765 5555555544
No 416
>PRK14527 adenylate kinase; Provisional
Probab=96.43 E-value=0.003 Score=64.08 Aligned_cols=33 Identities=30% Similarity=0.459 Sum_probs=28.4
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhcCCCeeE
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~ 421 (802)
+.|+-++++||||+||||+|+.+|.+.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 346679999999999999999999999876554
No 417
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.43 E-value=0.0075 Score=60.19 Aligned_cols=38 Identities=34% Similarity=0.435 Sum_probs=29.1
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhcCC---CeeEeeccc
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGV---PFFYRAGSE 426 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~eag~---pfi~is~se 426 (802)
..|.-|+|+|+||+||||+|+++++.+.. ..+.+++..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 35668999999999999999999998752 344555433
No 418
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.42 E-value=0.016 Score=70.78 Aligned_cols=100 Identities=24% Similarity=0.330 Sum_probs=57.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHhc---C--CCeeEeeccch----hhhhhhhhHHHHHHHHHHH---------H-hcCCcE
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEA---G--VPFFYRAGSEF----EEMFVGVGARRVRSLFQAA---------K-KKAPCI 453 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~ea---g--~pfi~is~se~----~e~~vG~~~k~vr~lF~~A---------r-~~aP~I 453 (802)
-++|+|+||||||++++++...+ + .+++.+..+.- .....|..+..+..++... . .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 68999999999999999996644 4 34443322111 1111122222333333211 0 123569
Q ss_pred EEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCC
Q 003696 454 IFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 505 (802)
Q Consensus 454 LfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~L 505 (802)
|+|||+..+. ...+..|+..+ ....++|++|-.+....+
T Consensus 420 lIvDEaSMvd----------~~~~~~Ll~~~---~~~~rlilvGD~~QLpsV 458 (720)
T TIGR01448 420 LIVDESSMMD----------TWLALSLLAAL---PDHARLLLVGDTDQLPSV 458 (720)
T ss_pred EEEeccccCC----------HHHHHHHHHhC---CCCCEEEEECccccccCC
Confidence 9999998882 34556666644 345678888866654333
No 419
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.42 E-value=0.016 Score=70.89 Aligned_cols=111 Identities=19% Similarity=0.187 Sum_probs=63.6
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHH---hcCCCeeEeeccchhh-hh---hh------------hhHHHHHHHHHHHHhc
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAG---EAGVPFFYRAGSEFEE-MF---VG------------VGARRVRSLFQAAKKK 449 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~---eag~pfi~is~se~~e-~~---vG------------~~~k~vr~lF~~Ar~~ 449 (802)
....-++++||||||||+|+..++. ..|...++++..+-.. .+ .| ..+..+..+-...+..
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~ 137 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSG 137 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcC
Confidence 3345688999999999999976654 3466777776654211 00 00 0111122222223456
Q ss_pred CCcEEEEcchhhhccccccC---C-c---chHHHHHHHHHHhcccccCCCEEEEeec
Q 003696 450 APCIIFIDEIDAVGSTRKQW---E-G---HTKKTLHQLLVEMDGFEQNEGIILMAAT 499 (802)
Q Consensus 450 aP~ILfIDEIDaLg~~r~~~---~-~---~~~~tLnqLL~eLDg~~~~~~VIVIaAT 499 (802)
.+.+|+||-+.++..+.+-. . . ...+.+++.|..|..+-...++.+|.+.
T Consensus 138 ~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 138 ALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred CCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 78999999999997522110 1 1 1123345666666666556677766653
No 420
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.42 E-value=0.015 Score=63.55 Aligned_cols=93 Identities=22% Similarity=0.385 Sum_probs=58.9
Q ss_pred Cce-EEEEccCCCcHHHHHHHHHHhcCCC----eeEe---------eccch-hhhhhhhhHHHHHHHHHHHHhcCCcEEE
Q 003696 391 PKG-ILLTGAPGTGKTLLAKAIAGEAGVP----FFYR---------AGSEF-EEMFVGVGARRVRSLFQAAKKKAPCIIF 455 (802)
Q Consensus 391 Pkg-VLL~GPPGTGKT~LArALA~eag~p----fi~i---------s~se~-~e~~vG~~~k~vr~lF~~Ar~~aP~ILf 455 (802)
|+| ||++||.|+||||..-++-...|.. .+.+ +-..+ ...-+|.-.......++.|-...|+||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 344 7788999999999998998877532 2222 22222 1223444344445556666677899999
Q ss_pred EcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecC
Q 003696 456 IDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (802)
Q Consensus 456 IDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN 500 (802)
+-|+-.. .++..-|..- ..+.+|++|-.
T Consensus 204 vGEmRD~------------ETi~~ALtAA-----ETGHLV~~TLH 231 (353)
T COG2805 204 VGEMRDL------------ETIRLALTAA-----ETGHLVFGTLH 231 (353)
T ss_pred EeccccH------------HHHHHHHHHH-----hcCCEEEEecc
Confidence 9997544 5666656543 35778888754
No 421
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.42 E-value=0.0029 Score=63.05 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=25.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeE
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~ 421 (802)
-+++.||||+||||+++.++..+|.+.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 58899999999999999999998866543
No 422
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.41 E-value=0.0026 Score=63.69 Aligned_cols=28 Identities=36% Similarity=0.686 Sum_probs=26.3
Q ss_pred EEEEccCCCcHHHHHHHHHHhcCCCeeE
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~eag~pfi~ 421 (802)
|-+.|||||||||+|+-+|..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6689999999999999999999999886
No 423
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.41 E-value=0.036 Score=61.43 Aligned_cols=37 Identities=35% Similarity=0.450 Sum_probs=28.5
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeecc
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 425 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~s 425 (802)
..|.-++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 456789999999999999999999865 4445544443
No 424
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.40 E-value=0.0081 Score=66.60 Aligned_cols=69 Identities=26% Similarity=0.355 Sum_probs=45.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhh------------hhHHHHHHHHHHHHhcCCcEEEEcch
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVG------------VGARRVRSLFQAAKKKAPCIIFIDEI 459 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG------------~~~k~vr~lF~~Ar~~aP~ILfIDEI 459 (802)
+.+.|.|+||+|||||++++++..+.+++.-.+.++.....+ ........ ...+...++.|||+|-
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~-~~~~~~~a~~iif~D~- 240 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRY-IDYAVRHAHKIAFIDT- 240 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHH-HHHHHhhcCCeEEEcC-
Confidence 479999999999999999999999999876555544433221 01111111 2233344667999995
Q ss_pred hhh
Q 003696 460 DAV 462 (802)
Q Consensus 460 DaL 462 (802)
+.+
T Consensus 241 ~~~ 243 (325)
T TIGR01526 241 DFI 243 (325)
T ss_pred ChH
Confidence 554
No 425
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.39 E-value=0.022 Score=61.71 Aligned_cols=91 Identities=20% Similarity=0.261 Sum_probs=60.9
Q ss_pred cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhhhhhhhHHH
Q 003696 359 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARR 438 (802)
Q Consensus 359 DViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~~vG~~~k~ 438 (802)
+++=.+++.+.+-.+.+.|..|.- ++||.|.+|+||++++|..|.-++..++.+..+.--. .......
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~G----------h~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPRG----------HALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTTE----------EEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCCC----------CeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 456677888888888887776643 7999999999999999999999999998877543111 2223455
Q ss_pred HHHHHHHHH-hcCCcEEEEcchhh
Q 003696 439 VRSLFQAAK-KKAPCIIFIDEIDA 461 (802)
Q Consensus 439 vr~lF~~Ar-~~aP~ILfIDEIDa 461 (802)
++.++..|- ++.|.+++|+|-+-
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~qi 100 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQI 100 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCCS
T ss_pred HHHHHHHHhccCCCeEEEecCccc
Confidence 667766654 45688888877543
No 426
>PRK04040 adenylate kinase; Provisional
Probab=96.38 E-value=0.0033 Score=64.29 Aligned_cols=30 Identities=27% Similarity=0.404 Sum_probs=26.3
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhc--CCCee
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEA--GVPFF 420 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~ea--g~pfi 420 (802)
|+-++++|+||+||||+++.++..+ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 5679999999999999999999999 55554
No 427
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.0081 Score=59.88 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.6
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhc
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~ea 415 (802)
...-+.|.||+|+|||+|.+.+++..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 33468999999999999999999965
No 428
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.38 E-value=0.0071 Score=67.45 Aligned_cols=84 Identities=21% Similarity=0.354 Sum_probs=55.7
Q ss_pred Ccc-cccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhcC-CCeeEeeccchhhhhhh
Q 003696 356 TFK-DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-VPFFYRAGSEFEEMFVG 433 (802)
Q Consensus 356 tFd-DViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~eag-~pfi~is~se~~e~~vG 433 (802)
-|+ ++.|.+++. .++|++++.... . ....-+-++|.||+|+|||++++.+.+-+. .+++.+..+-+.+.-..
T Consensus 58 ~f~~~~~G~~~~i---~~lV~~fk~AA~--g-~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~ 131 (358)
T PF08298_consen 58 FFEDEFYGMEETI---ERLVNYFKSAAQ--G-LEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLH 131 (358)
T ss_pred CccccccCcHHHH---HHHHHHHHHHHh--c-cCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhh
Confidence 366 899999984 555666665433 1 122335788999999999999999987653 36666655555444344
Q ss_pred hhHHHHHHHHHH
Q 003696 434 VGARRVRSLFQA 445 (802)
Q Consensus 434 ~~~k~vr~lF~~ 445 (802)
...+.+|+.|..
T Consensus 132 L~P~~~r~~~~~ 143 (358)
T PF08298_consen 132 LFPKELRREFED 143 (358)
T ss_pred hCCHhHHHHHHH
Confidence 445666666644
No 429
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.37 E-value=0.0099 Score=60.84 Aligned_cols=43 Identities=30% Similarity=0.536 Sum_probs=33.4
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHhc-CCCeeEeeccchhhh
Q 003696 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA-GVPFFYRAGSEFEEM 430 (802)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArALA~ea-g~pfi~is~se~~e~ 430 (802)
...|.-+++.|+||+|||+++..+..+. +..++.++..++...
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 3578899999999999999999999988 778888998887654
No 430
>PRK02496 adk adenylate kinase; Provisional
Probab=96.37 E-value=0.003 Score=63.49 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=26.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEe
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~i 422 (802)
-+++.||||+|||++++.+|...+.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998776543
No 431
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.37 E-value=0.04 Score=63.30 Aligned_cols=74 Identities=22% Similarity=0.196 Sum_probs=46.6
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhh---------------hhh-----hhHHHHHHHHHH
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM---------------FVG-----VGARRVRSLFQA 445 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~---------------~vG-----~~~k~vr~lF~~ 445 (802)
..|.-++|+||+|+||||++..+|..+ |..+..+++..+... +.+ ......++.++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 457789999999999999999998765 656666665433210 000 111223345555
Q ss_pred HHhcCCcEEEEcchhhh
Q 003696 446 AKKKAPCIIFIDEIDAV 462 (802)
Q Consensus 446 Ar~~aP~ILfIDEIDaL 462 (802)
++...-.+||||=...+
T Consensus 178 ~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRH 194 (429)
T ss_pred HHhCCCCEEEEECCCCC
Confidence 65555578998876433
No 432
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.37 E-value=0.016 Score=56.45 Aligned_cols=69 Identities=26% Similarity=0.352 Sum_probs=40.4
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhcCCC--eeEeecc---chhhhhhhhhHHHHHHHHHHHHhcCCcEEEEcchhh
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEAGVP--FFYRAGS---EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 461 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~eag~p--fi~is~s---e~~e~~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDa 461 (802)
...+.|.||+|+|||+|++++++..... -+.+++. .+...+. .+ .+-+-.+..+-...|.++++||-..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS-~G-~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS-GG-EKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC-HH-HHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 3468899999999999999999865210 0111110 0000011 11 2223334455557889999999654
No 433
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.35 E-value=0.02 Score=58.69 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.5
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 003696 392 KGILLTGAPGTGKTLLAKAIA 412 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA 412 (802)
+.++|+||.|+|||++.|.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 434
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.34 E-value=0.02 Score=58.03 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHh
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGE 414 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~e 414 (802)
.-+.|.||.|+|||||.+++...
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 45889999999999999999754
No 435
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.33 E-value=0.021 Score=65.56 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=28.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhc-----CCCeeEeeccch
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEF 427 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~ea-----g~pfi~is~se~ 427 (802)
++.++|.||+|+||||++..+|..+ +..+..+++..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 4578999999999999998887643 345666666553
No 436
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.33 E-value=0.013 Score=60.02 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 003696 392 KGILLTGAPGTGKTLLAKAIAG 413 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ 413 (802)
.-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4699999999999999999983
No 437
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.32 E-value=0.0088 Score=51.15 Aligned_cols=30 Identities=33% Similarity=0.525 Sum_probs=23.7
Q ss_pred EEEEccCCCcHHHHHHHHHHhc-CCCeeEee
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEA-GVPFFYRA 423 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~ea-g~pfi~is 423 (802)
+.+.|+||+|||+++++++..+ +..+..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 6789999999999999999985 23444443
No 438
>PTZ00035 Rad51 protein; Provisional
Probab=96.32 E-value=0.019 Score=64.06 Aligned_cols=110 Identities=12% Similarity=0.129 Sum_probs=60.4
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhc---------CCCeeEeeccch-h-----hhh--hhh----------------h
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF-E-----EMF--VGV----------------G 435 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~ea---------g~pfi~is~se~-~-----e~~--vG~----------------~ 435 (802)
....-+.|+||||+|||+++..++... +...++++...- . ... .+. .
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccCCH
Confidence 333457799999999999999997543 335566665431 1 000 000 0
Q ss_pred ---HHHHHHHHHHHHhcCCcEEEEcchhhhccccccCC---cchHHHHHHHHHHhcccccCCCEEEEee
Q 003696 436 ---ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAA 498 (802)
Q Consensus 436 ---~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~---~~~~~tLnqLL~eLDg~~~~~~VIVIaA 498 (802)
...+..+........+.+|+||=|-++....-... ...++.+.+++..|..+....++.|+.+
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 01111222222345678999999999764311111 1123446666666655545556666644
No 439
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.32 E-value=0.028 Score=58.78 Aligned_cols=124 Identities=23% Similarity=0.318 Sum_probs=75.7
Q ss_pred chhhhhcCCCCCce--EEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhh------------------------
Q 003696 380 PSKFTRLGGKLPKG--ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM------------------------ 430 (802)
Q Consensus 380 p~~~~~lG~~~Pkg--VLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~------------------------ 430 (802)
.+.-.++|+-+|.| +|+.|+.|||||.|.+.++--. +....+++...-...
T Consensus 15 delDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~ 94 (235)
T COG2874 15 DELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFF 94 (235)
T ss_pred HHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEE
Confidence 33445667766655 7788999999999999987522 222222221100000
Q ss_pred ---------hhhhhHHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCC
Q 003696 431 ---------FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 501 (802)
Q Consensus 431 ---------~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~ 501 (802)
-.....+.+..+.+..+.....+|+||-+..+.... ....+.+++..+..+...+++|++ |-+
T Consensus 95 ~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~------~~~~vl~fm~~~r~l~d~gKvIil--Tvh 166 (235)
T COG2874 95 PVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD------SEDAVLNFMTFLRKLSDLGKVIIL--TVH 166 (235)
T ss_pred EecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc------cHHHHHHHHHHHHHHHhCCCEEEE--EeC
Confidence 011122344455555555666899999999886532 345666777777766667777765 445
Q ss_pred CCCCChhhcC
Q 003696 502 PDILDPALTR 511 (802)
Q Consensus 502 pe~LD~ALlR 511 (802)
|..++.+.+-
T Consensus 167 p~~l~e~~~~ 176 (235)
T COG2874 167 PSALDEDVLT 176 (235)
T ss_pred hhhcCHHHHH
Confidence 7888887764
No 440
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.31 E-value=0.0034 Score=64.74 Aligned_cols=28 Identities=43% Similarity=0.718 Sum_probs=25.4
Q ss_pred EEEEccCCCcHHHHHHHHHHhcCCCeeE
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~eag~pfi~ 421 (802)
|++.||||+||||+|+.+|...|++.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999876655
No 441
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.30 E-value=0.03 Score=65.31 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=30.4
Q ss_pred CCCCCceEEEEccCCCcHHHHHHHHHHh----cCCCeeEeeccc
Q 003696 387 GGKLPKGILLTGAPGTGKTLLAKAIAGE----AGVPFFYRAGSE 426 (802)
Q Consensus 387 G~~~PkgVLL~GPPGTGKT~LArALA~e----ag~pfi~is~se 426 (802)
|......+|++||||||||+||..++.+ .|-+.++++..+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 3445577999999999999999988543 267888777543
No 442
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.28 E-value=0.0032 Score=58.26 Aligned_cols=22 Identities=45% Similarity=0.733 Sum_probs=21.0
Q ss_pred EEEEccCCCcHHHHHHHHHHhc
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~ea 415 (802)
|+|.|+||+||||+|+.++.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 443
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.27 E-value=0.013 Score=67.90 Aligned_cols=93 Identities=23% Similarity=0.305 Sum_probs=60.9
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCce-EEEEccCCCcHHHHHHHHHHhcCCCeeE-eeccchhhh
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKG-ILLTGAPGTGKTLLAKAIAGEAGVPFFY-RAGSEFEEM 430 (802)
Q Consensus 353 ~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~Pkg-VLL~GPPGTGKT~LArALA~eag~pfi~-is~se~~e~ 430 (802)
...+|+++.......+.+.+++. .|.| +|++||.|+|||+..-++..+++.+... ++..+-.+.
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~--------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLN--------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 35578888888888777777664 3455 6788999999999999999988765442 222222111
Q ss_pred ------------hhhhhHHHHHHHHHHHHhcCCcEEEEcchhhh
Q 003696 431 ------------FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAV 462 (802)
Q Consensus 431 ------------~vG~~~k~vr~lF~~Ar~~aP~ILfIDEIDaL 462 (802)
-.|.+ ....++..-.+.|+||+|.||-..
T Consensus 299 ~~~gI~Q~qVN~k~glt---fa~~LRa~LRqDPDvImVGEIRD~ 339 (500)
T COG2804 299 QLPGINQVQVNPKIGLT---FARALRAILRQDPDVIMVGEIRDL 339 (500)
T ss_pred ecCCcceeecccccCCC---HHHHHHHHhccCCCeEEEeccCCH
Confidence 11111 123344445678999999999654
No 444
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.066 Score=60.62 Aligned_cols=115 Identities=19% Similarity=0.234 Sum_probs=59.1
Q ss_pred CcEEEEcchhhhcc----ccccCCc--chHHHHHH-HHHHhcccccCCCEEEEeec--CCCCCCChh-----hcC----C
Q 003696 451 PCIIFIDEIDAVGS----TRKQWEG--HTKKTLHQ-LLVEMDGFEQNEGIILMAAT--NLPDILDPA-----LTR----P 512 (802)
Q Consensus 451 P~ILfIDEIDaLg~----~r~~~~~--~~~~tLnq-LL~eLDg~~~~~~VIVIaAT--N~pe~LD~A-----LlR----p 512 (802)
|-++.||.+.++.. ++..... ..+-++-+ +...+.+ .-..+.++.++. ..|...++. ..| +
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~n-dwt~g~vi~a~s~~~~~~a~~h~gv~~y~pr~llg~ 394 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISN-DWTFGSVIMAISGVTTPSAFGHLGVAPYVPRKLLGE 394 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhc-ccccceEEEEecccccchhccccccccCCchHhcCc
Confidence 55888999999977 3222211 12223333 3344433 334455555544 222221111 111 1
Q ss_pred Cccce-----EEEccCCCHHHHHHHHHHHhccCCCCCccc----HHHHHhcCCCCCHHHHHHHH
Q 003696 513 GRFDR-----HIVVPNPDVRGRQEILELYLQDKPLADDVD----VKAIARGTPGFNGADLANLV 567 (802)
Q Consensus 513 GRFdr-----~I~v~lPd~eeR~~ILk~~l~~~~l~~dvd----l~~LA~~t~G~SgaDL~nLv 567 (802)
--||. .|+++..+.++-.+++..|++..-+..+++ ...+--.. +.+|+-++.+|
T Consensus 395 egfe~lqpf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lc 457 (461)
T KOG3928|consen 395 EGFEALQPFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLC 457 (461)
T ss_pred cchhhccCcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHH
Confidence 11222 578889999999999999987643332222 22332222 56776666665
No 445
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.27 E-value=0.018 Score=57.63 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=22.7
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhc
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~ea 415 (802)
....+.|.||+|+|||+|++.+++..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34568999999999999999999864
No 446
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.25 E-value=0.032 Score=55.69 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=21.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ea 415 (802)
.-+.|.||.|+|||+|.+.+++..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 358899999999999999999864
No 447
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.25 E-value=0.016 Score=64.12 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=61.3
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHhc------C---CCeeEeeccch-h-----hhh--hhhh---------------
Q 003696 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA------G---VPFFYRAGSEF-E-----EMF--VGVG--------------- 435 (802)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArALA~ea------g---~pfi~is~se~-~-----e~~--vG~~--------------- 435 (802)
...-.-+.++||||+|||+++..++..+ | ...++++..+- . ... .+..
T Consensus 93 i~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~~ 172 (316)
T TIGR02239 93 IETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAYN 172 (316)
T ss_pred CCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecCC
Confidence 3444557899999999999999988632 1 25577766541 1 000 0000
Q ss_pred ----HHHHHHHHHHHHhcCCcEEEEcchhhhccccccCCcc---hHHHHHHHHHHhcccccCCCEEEEeec
Q 003696 436 ----ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH---TKKTLHQLLVEMDGFEQNEGIILMAAT 499 (802)
Q Consensus 436 ----~k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~~---~~~tLnqLL~eLDg~~~~~~VIVIaAT 499 (802)
...+..+........+.+|+||-|-++....-...+. .+..+.+++..|..+....++.||.+.
T Consensus 173 ~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 173 TDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred hHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 0111222222234568899999999985432111111 123455666666655555566666543
No 448
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.24 E-value=0.0086 Score=70.94 Aligned_cols=27 Identities=41% Similarity=0.607 Sum_probs=23.1
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHh
Q 003696 388 GKLPKGILLTGAPGTGKTLLAKAIAGE 414 (802)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArALA~e 414 (802)
.++-..+|+.||+|||||+|.||+|+-
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 344457999999999999999999983
No 449
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.24 E-value=0.018 Score=57.32 Aligned_cols=37 Identities=32% Similarity=0.488 Sum_probs=29.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccch
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 427 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~ 427 (802)
+.-+.|.|+||+|||++|+++++.+ +..+..+++..+
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 4578999999999999999999876 445666666544
No 450
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.24 E-value=0.025 Score=57.37 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=20.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHh
Q 003696 393 GILLTGAPGTGKTLLAKAIAGE 414 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~e 414 (802)
-++++||+||||++|.|++|.-
T Consensus 31 ~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhc
Confidence 5899999999999999999983
No 451
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.24 E-value=0.014 Score=58.20 Aligned_cols=24 Identities=42% Similarity=0.411 Sum_probs=21.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ea 415 (802)
..+.|.||.|+|||+|++.+++..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999854
No 452
>PRK14529 adenylate kinase; Provisional
Probab=96.19 E-value=0.021 Score=60.15 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=28.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchh
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~ 428 (802)
.|+|.||||+||||+++.+|...+.+.+ +..++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdll 35 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIF 35 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhh
Confidence 4899999999999999999999997765 334443
No 453
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.19 E-value=0.014 Score=65.28 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=62.6
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhc---------CCCeeEeeccc------hhhhh--hhh----------------hH
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE------FEEMF--VGV----------------GA 436 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~ea---------g~pfi~is~se------~~e~~--vG~----------------~~ 436 (802)
.-.-++++|+||+|||+++..+|-.+ +.+.+|++... +.+.. .+. ..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~~e 201 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYNTD 201 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCCHH
Confidence 33457799999999999999887432 23677777654 11100 000 00
Q ss_pred ---HHHHHHHHHHHhcCCcEEEEcchhhhccccccCCc---chHHHHHHHHHHhcccccCCCEEEEeecC
Q 003696 437 ---RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (802)
Q Consensus 437 ---k~vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~~---~~~~tLnqLL~eLDg~~~~~~VIVIaATN 500 (802)
..+..+........+.+|+||=|-++....-...+ ..+..+.+++..|..+....++.||.+..
T Consensus 202 ~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 202 HQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 11112222234457889999999998653111111 12344667777666655556666665543
No 454
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.18 E-value=0.023 Score=61.50 Aligned_cols=70 Identities=20% Similarity=0.307 Sum_probs=37.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchh-h--hh-hhhhHHHHHHHHHHHHh---cCCcEEEEcchhhh
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE-E--MF-VGVGARRVRSLFQAAKK---KAPCIIFIDEIDAV 462 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~-e--~~-vG~~~k~vr~lF~~Ar~---~aP~ILfIDEIDaL 462 (802)
=|+|+|-||+|||++|+.|+..+ +..+..++-..+. . .| ....++.+|..+..+-. ....||++|....+
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 37899999999999999998864 5666666644443 1 12 12334555544443321 23479999998877
No 455
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.18 E-value=0.057 Score=57.61 Aligned_cols=134 Identities=17% Similarity=0.242 Sum_probs=73.7
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhcCC--CeeEeeccchhhhh--------hhh------hH---HH----HHHHHHH
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSEFEEMF--------VGV------GA---RR----VRSLFQA 445 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~eag~--pfi~is~se~~e~~--------vG~------~~---k~----vr~lF~~ 445 (802)
+.|-.+.+.|++|||||++++.+.....- ..+.+-.......| +.. .. .+ +.+....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 34557999999999999999999876532 22222211111110 000 00 01 1111111
Q ss_pred HHh---cCCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEcc
Q 003696 446 AKK---KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVP 522 (802)
Q Consensus 446 Ar~---~aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~ 522 (802)
... ..+++|++|++..- ....+.+.+++.. ...-++-+|-.+.....||+.++. -.+..+-++
T Consensus 91 ~~~~k~~~~~LiIlDD~~~~--------~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i~~~ 156 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGDK--------KLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYFIIFN 156 (241)
T ss_pred hcccCCCCCeEEEEeCCCCc--------hhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEEEEec
Confidence 111 23679999997421 0113345555532 233456777778888899999865 566666665
Q ss_pred CCCHHHHHHHHHHHh
Q 003696 523 NPDVRGRQEILELYL 537 (802)
Q Consensus 523 lPd~eeR~~ILk~~l 537 (802)
-+..+...|++.+.
T Consensus 157 -~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 157 -NSKRDLENIYRNMN 170 (241)
T ss_pred -CcHHHHHHHHHhcc
Confidence 46666666666543
No 456
>PRK01184 hypothetical protein; Provisional
Probab=96.17 E-value=0.0045 Score=62.14 Aligned_cols=29 Identities=41% Similarity=0.618 Sum_probs=25.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEe
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~i 422 (802)
-|+|+||||+||||+++ ++.+.|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58899999999999998 788999887654
No 457
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.17 E-value=0.065 Score=61.73 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=48.0
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHhc----CCCeeEeeccchhhh-------h--------h--h---hhHHHHHHHH
Q 003696 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEM-------F--------V--G---VGARRVRSLF 443 (802)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArALA~ea----g~pfi~is~se~~e~-------~--------v--G---~~~k~vr~lF 443 (802)
...|.-++++||+|+||||++..+|..+ |..+..+++..+... + . + .......+.+
T Consensus 96 ~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 96 KKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 3457889999999999999988887653 566666666543211 0 0 0 0112334555
Q ss_pred HHHHhcCCcEEEEcchhhh
Q 003696 444 QAAKKKAPCIIFIDEIDAV 462 (802)
Q Consensus 444 ~~Ar~~aP~ILfIDEIDaL 462 (802)
+.++.....+|+||=...+
T Consensus 176 ~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHHhcCCCEEEEeCCCcc
Confidence 5665666678998876544
No 458
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.16 E-value=0.015 Score=57.56 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHH
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAG 413 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~ 413 (802)
|+..+++||.|+|||++.++++-
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999853
No 459
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.16 E-value=0.0077 Score=61.50 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.0
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhc
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~ea 415 (802)
.|+-++|+||+|+|||+|++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35679999999999999999998765
No 460
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.16 E-value=0.018 Score=65.53 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcC
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAG 416 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag 416 (802)
-++|+||||+|||++++.+++...
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhc
Confidence 499999999999999999999753
No 461
>PRK04182 cytidylate kinase; Provisional
Probab=96.12 E-value=0.0051 Score=60.76 Aligned_cols=29 Identities=34% Similarity=0.599 Sum_probs=26.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeE
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~ 421 (802)
-|.|.|+||+|||++++.+|..+|.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48899999999999999999999998765
No 462
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.12 E-value=0.093 Score=57.74 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=32.5
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchh
Q 003696 388 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (802)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~ 428 (802)
.+.|.-+++.|++|||||++|+.+|..+|.+. .++...+.
T Consensus 89 ~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~-vi~~D~~r 128 (301)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRLGIRS-VIGTDSIR 128 (301)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCE-EEechHHH
Confidence 35788899999999999999999999999884 34444443
No 463
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.12 E-value=0.0041 Score=62.88 Aligned_cols=30 Identities=37% Similarity=0.510 Sum_probs=26.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEee
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 423 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is 423 (802)
-++++|.|||||||+++.++ ++|.+.++++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 9998887754
No 464
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.10 E-value=0.0043 Score=61.10 Aligned_cols=27 Identities=48% Similarity=0.775 Sum_probs=21.4
Q ss_pred EEEEccCCCcHHHHHHHHHHhcCCCeeE
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~eag~pfi~ 421 (802)
|.|+|+||||||||+++++.. |.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~ 28 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVP 28 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEe
Confidence 789999999999999999998 888773
No 465
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.10 E-value=0.026 Score=56.76 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.0
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhc
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~ea 415 (802)
..-+.|.||+|+|||+|++.+++..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999864
No 466
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.09 E-value=0.036 Score=64.93 Aligned_cols=77 Identities=29% Similarity=0.272 Sum_probs=49.2
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhhhh------h----------------------hhH
Q 003696 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------G----------------------VGA 436 (802)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~~v------G----------------------~~~ 436 (802)
......++++||||+|||+++..++.+. |.+.++++..+-.+.+. | ...
T Consensus 270 ~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 349 (509)
T PRK09302 270 FFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLE 349 (509)
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCHH
Confidence 3444568899999999999999987654 67777776543221110 0 001
Q ss_pred HHHHHHHHHHHhcCCcEEEEcchhhhcc
Q 003696 437 RRVRSLFQAAKKKAPCIIFIDEIDAVGS 464 (802)
Q Consensus 437 k~vr~lF~~Ar~~aP~ILfIDEIDaLg~ 464 (802)
..+..+.+......|.+|+||-+..+..
T Consensus 350 ~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 350 DHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 2223333444556788999999998854
No 467
>PF13245 AAA_19: Part of AAA domain
Probab=96.09 E-value=0.0086 Score=52.60 Aligned_cols=32 Identities=41% Similarity=0.474 Sum_probs=21.2
Q ss_pred eEEEEccCCCcHH-HHHHHHHHhc------CCCeeEeec
Q 003696 393 GILLTGAPGTGKT-LLAKAIAGEA------GVPFFYRAG 424 (802)
Q Consensus 393 gVLL~GPPGTGKT-~LArALA~ea------g~pfi~is~ 424 (802)
-+++.|||||||| ++++.++... +..++.+..
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 4566999999999 5566665544 444555543
No 468
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.032 Score=63.21 Aligned_cols=80 Identities=26% Similarity=0.487 Sum_probs=58.3
Q ss_pred CCCCCce-EEEEccCCCcHHHHHHHHHHhc--CCCeeEeeccchhhhhh------h--------hhHHHHHHHHHHHHhc
Q 003696 387 GGKLPKG-ILLTGAPGTGKTLLAKAIAGEA--GVPFFYRAGSEFEEMFV------G--------VGARRVRSLFQAAKKK 449 (802)
Q Consensus 387 G~~~Pkg-VLL~GPPGTGKT~LArALA~ea--g~pfi~is~se~~e~~v------G--------~~~k~vr~lF~~Ar~~ 449 (802)
|+-.|.+ +|+-|.||.|||||.-.++..+ ..+.+|+++.+-....- | ..+.++.++.+.+...
T Consensus 88 GG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~ 167 (456)
T COG1066 88 GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQE 167 (456)
T ss_pred CCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhc
Confidence 3444543 6777899999998888877654 34899999876543321 1 1234677888888999
Q ss_pred CCcEEEEcchhhhcccc
Q 003696 450 APCIIFIDEIDAVGSTR 466 (802)
Q Consensus 450 aP~ILfIDEIDaLg~~r 466 (802)
.|.+++||-|+.+....
T Consensus 168 ~p~lvVIDSIQT~~s~~ 184 (456)
T COG1066 168 KPDLVVIDSIQTLYSEE 184 (456)
T ss_pred CCCEEEEeccceeeccc
Confidence 99999999999996644
No 469
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.06 E-value=0.013 Score=66.79 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=28.6
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhcCCCeeEe
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 422 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~eag~pfi~i 422 (802)
..+.|.|.|++|||||||+++||...|.+++.-
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E 250 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWE 250 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeee
Confidence 346899999999999999999999998886543
No 470
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.04 E-value=0.047 Score=63.94 Aligned_cols=39 Identities=28% Similarity=0.301 Sum_probs=29.2
Q ss_pred CCCCceEEEEccCCCcHHHHHHHHHHhc----CCCeeEeeccc
Q 003696 388 GKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSE 426 (802)
Q Consensus 388 ~~~PkgVLL~GPPGTGKT~LArALA~ea----g~pfi~is~se 426 (802)
.+...-+|++|+||+|||+|+..++.+. |-+.++++..+
T Consensus 28 ~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee 70 (509)
T PRK09302 28 LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE 70 (509)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 3444569999999999999999876532 66777776544
No 471
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.02 E-value=0.0061 Score=59.82 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=26.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeE
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 421 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~ 421 (802)
-|.++|++|+|||++|+.++..+|.+++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 37899999999999999999999998765
No 472
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.98 E-value=0.014 Score=58.48 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=21.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhc
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ea 415 (802)
.-+.|.||.|+|||+|++++++..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999854
No 473
>PF13479 AAA_24: AAA domain
Probab=95.98 E-value=0.012 Score=61.15 Aligned_cols=68 Identities=25% Similarity=0.343 Sum_probs=39.3
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhcCCCee-Eeeccc--hhh-----hhhhhhHHHHHHHHHHHH--hcCCcEEEEcchh
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEAGVPFF-YRAGSE--FEE-----MFVGVGARRVRSLFQAAK--KKAPCIIFIDEID 460 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~eag~pfi-~is~se--~~e-----~~vG~~~k~vr~lF~~Ar--~~aP~ILfIDEID 460 (802)
|..++||||||+|||++|..+ +.|++ .+.... +.. .+.-..-..+.+.+..+. ...-..|+||-++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 457999999999999999887 33332 222221 000 000012234455554432 2344699999998
Q ss_pred hh
Q 003696 461 AV 462 (802)
Q Consensus 461 aL 462 (802)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 86
No 474
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.97 E-value=0.024 Score=60.79 Aligned_cols=112 Identities=19% Similarity=0.205 Sum_probs=62.4
Q ss_pred EEEccCCCcHHHHHHHHHHhcC---------CCeeEeeccc-h--------hhhhhhhh------------------HHH
Q 003696 395 LLTGAPGTGKTLLAKAIAGEAG---------VPFFYRAGSE-F--------EEMFVGVG------------------ARR 438 (802)
Q Consensus 395 LL~GPPGTGKT~LArALA~eag---------~pfi~is~se-~--------~e~~vG~~------------------~k~ 438 (802)
=|+||||+|||.|+..+|-.+. ...+|++... | .+.|.... ...
T Consensus 42 Ei~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~ 121 (256)
T PF08423_consen 42 EIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLEL 121 (256)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHHH
T ss_pred EEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHHH
Confidence 3999999999999998886543 3367776533 2 11110000 011
Q ss_pred HHHHHHHHHhcCCcEEEEcchhhhccccccCC---cchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCC
Q 003696 439 VRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILD 506 (802)
Q Consensus 439 vr~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~---~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD 506 (802)
+..+-.........+|+||-|-++.+..-... ......+..++..|..+....++.||.+..-....+
T Consensus 122 L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~ 192 (256)
T PF08423_consen 122 LEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKID 192 (256)
T ss_dssp HHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT
T ss_pred HHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCC
Confidence 11121222334567999999999865321111 123566777777776666667777765544333444
No 475
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.97 E-value=0.014 Score=65.23 Aligned_cols=26 Identities=46% Similarity=0.703 Sum_probs=21.7
Q ss_pred CCCCce--EEEEccCCCcHHHHHHHHHH
Q 003696 388 GKLPKG--ILLTGAPGTGKTLLAKAIAG 413 (802)
Q Consensus 388 ~~~Pkg--VLL~GPPGTGKT~LArALA~ 413 (802)
..+..| +-|.||+||||||+.|.||+
T Consensus 26 l~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 26 LDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred eeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 344455 66999999999999999998
No 476
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.052 Score=65.33 Aligned_cols=225 Identities=24% Similarity=0.336 Sum_probs=125.6
Q ss_pred cCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEc----cCCCcHHHHHHHHHHhc---------
Q 003696 349 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTG----APGTGKTLLAKAIAGEA--------- 415 (802)
Q Consensus 349 ~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~G----PPGTGKT~LArALA~ea--------- 415 (802)
.|.....+|+++.|.+..+.....- ++. +...-...+..+.++| ++|.+++..++.+-.+.
T Consensus 95 ~~~~~~~~~~~~~~~k~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~ 168 (647)
T COG1067 95 VPAGRPESFSELLGQKAEEKAEYLS--YLI----LLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVS 168 (647)
T ss_pred ccccCCcchHHHHHhhhhHHHHHHh--hhh----HHHhhchhhhhhhhcccccccchhhHHHHHHHHHhhhhcccchhhh
Confidence 3444556788888887654444332 100 1111223344677777 99999999987654431
Q ss_pred ------------CCCeeEeeccchhhh--------hhhh----hHHHH-HHHHHHHHhcCCcEEEEcchhhhccccccCC
Q 003696 416 ------------GVPFFYRAGSEFEEM--------FVGV----GARRV-RSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE 470 (802)
Q Consensus 416 ------------g~pfi~is~se~~e~--------~vG~----~~k~v-r~lF~~Ar~~aP~ILfIDEIDaLg~~r~~~~ 470 (802)
+.||++-........ |-|. +..++ ..+..+|.. .||||||++.|..
T Consensus 169 ~~~~~~~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~~~~i~pGaVHkAng---GVLiIdei~lL~~------ 239 (647)
T COG1067 169 VPKNFVELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTGHIRVKPGAVHKANG---GVLIIDEIGLLAQ------ 239 (647)
T ss_pred hhhhhhhhccccCCcEEecCCCChhhcceeEEEcCCCCccCCCCcccccCcccccccC---cEEEEEhhhhhCc------
Confidence 245554433322111 1110 01111 112222322 4999999999942
Q ss_pred cchHHHHHHHHHHhccc-------------------ccCCCEEEEeecCCCC-----CCChhhcCCCccceEEEc--cCC
Q 003696 471 GHTKKTLHQLLVEMDGF-------------------EQNEGIILMAATNLPD-----ILDPALTRPGRFDRHIVV--PNP 524 (802)
Q Consensus 471 ~~~~~tLnqLL~eLDg~-------------------~~~~~VIVIaATN~pe-----~LD~ALlRpGRFdr~I~v--~lP 524 (802)
..++.+|+.|..- .-...+++|++.|+-+ .+|+.+.. -|....++ +.|
T Consensus 240 ----~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~--g~~y~ae~~~~m~ 313 (647)
T COG1067 240 ----PLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIE--GFGYEAEFEDTMP 313 (647)
T ss_pred ----HHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHh--hcceEEEEcCCCC
Confidence 3334444433211 0012467777777632 33444433 23333444 466
Q ss_pred -CHHHHHHHHHHHhccCCCC---Cccc---HHHH----HhcCC-----CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003696 525 -DVRGRQEILELYLQDKPLA---DDVD---VKAI----ARGTP-----GFNGADLANLVNIAAIKAAVDGGEKLTATELE 588 (802)
Q Consensus 525 -d~eeR~~ILk~~l~~~~l~---~dvd---l~~L----A~~t~-----G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle 588 (802)
..+.|.++++.+.+..... +..+ +..| .+++. -.+++||.++++.|...|..++...|+.+|++
T Consensus 314 ~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve 393 (647)
T COG1067 314 ITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVE 393 (647)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHH
Confidence 6778888888776532111 1222 2222 22221 25789999999999999999999999999999
Q ss_pred HHHHHH
Q 003696 589 FAKDRI 594 (802)
Q Consensus 589 ~A~~ri 594 (802)
+|+++.
T Consensus 394 ~a~~~~ 399 (647)
T COG1067 394 EALQKR 399 (647)
T ss_pred HHHHhh
Confidence 999874
No 477
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.96 E-value=0.047 Score=57.70 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=19.4
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 003696 393 GILLTGAPGTGKTLLAKAIAG 413 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~ 413 (802)
-+-+.||+|+|||||...++.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999986
No 478
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.95 E-value=0.015 Score=71.25 Aligned_cols=96 Identities=27% Similarity=0.334 Sum_probs=54.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHh---cCCCeeEeeccchhhh----hhhhhHHHHHHHHHH-HH----hcCCcEEEEcchh
Q 003696 393 GILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGSEFEEM----FVGVGARRVRSLFQA-AK----KKAPCIIFIDEID 460 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~e---ag~pfi~is~se~~e~----~vG~~~k~vr~lF~~-Ar----~~aP~ILfIDEID 460 (802)
-++|.|+||||||++++++... .|..++.+..+..... ..|..+..+..+... .+ .....+|+|||+-
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEas 449 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEAG 449 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECcc
Confidence 5789999999999999999653 3656655543322111 112111222222111 11 1234799999998
Q ss_pred hhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecC
Q 003696 461 AVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (802)
Q Consensus 461 aLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN 500 (802)
.+. ...+..|+.... .....+|++|=.+
T Consensus 450 Mv~----------~~~~~~Ll~~~~--~~~~kliLVGD~~ 477 (744)
T TIGR02768 450 MVG----------SRQMARVLKEAE--EAGAKVVLVGDPE 477 (744)
T ss_pred cCC----------HHHHHHHHHHHH--hcCCEEEEECChH
Confidence 773 234556665433 2345677777544
No 479
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.94 E-value=0.028 Score=56.36 Aligned_cols=23 Identities=35% Similarity=0.252 Sum_probs=19.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHhc
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~ea 415 (802)
-|.+|+++|+|||++|-++|-.+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999997654
No 480
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.92 E-value=0.021 Score=57.13 Aligned_cols=40 Identities=33% Similarity=0.485 Sum_probs=32.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchhhh
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM 430 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~e~ 430 (802)
|.-|.|+|.||+|||++|+++...+ |.+.+.+++..+...
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 4568999999999999999998866 788888888766543
No 481
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.92 E-value=0.023 Score=66.64 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.7
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhc
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~ea 415 (802)
...+.|+||+|+||||++..+|..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999998753
No 482
>PRK04132 replication factor C small subunit; Provisional
Probab=95.89 E-value=0.0043 Score=76.30 Aligned_cols=51 Identities=27% Similarity=0.521 Sum_probs=41.2
Q ss_pred cccccCCCCCCCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCCcHHHH
Q 003696 345 NKEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLL 407 (802)
Q Consensus 345 ~~~~~~~~~~~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~L 407 (802)
++++..+..+.+|+||+|++.+++.|+..+. ..++| +++|+||||+||++.
T Consensus 6 ~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~-----------~~~i~-h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 6 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVK-----------TGSMP-HLLFAGPPGVGKCLT 56 (846)
T ss_pred cccHHHhhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCC-eEEEECCCCCCcccc
Confidence 3456667778899999999999999988886 24556 478999999999643
No 483
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.86 E-value=0.055 Score=54.51 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=27.2
Q ss_pred EEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhh
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 430 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~ 430 (802)
|.|+|+||+||||+++.++. .|.+++. +.++...
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~--~D~~~~~ 35 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVID--ADKIAHE 35 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEe--cCHHHHh
Confidence 68999999999999999998 7877654 4455443
No 484
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.85 E-value=0.0063 Score=61.77 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=17.4
Q ss_pred EEEEccCCCcHHHHHHHHHHhc
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~ea 415 (802)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777776654
No 485
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=95.84 E-value=0.02 Score=58.54 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=18.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHhc
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~ea 415 (802)
++|+.|++|+|||++.++++..+
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l 62 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSL 62 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHHHHHH
Confidence 89999999999999999987654
No 486
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.81 E-value=0.033 Score=62.72 Aligned_cols=68 Identities=24% Similarity=0.269 Sum_probs=40.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcC------CCeeEee-ccchhh------------hhhhhhHHHHHHHHHHHHhcCCcE
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAG------VPFFYRA-GSEFEE------------MFVGVGARRVRSLFQAAKKKAPCI 453 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag------~pfi~is-~se~~e------------~~vG~~~k~vr~lF~~Ar~~aP~I 453 (802)
.++++||+|+||||+++++++... ..++.+. ..++.- .-++............+....|.+
T Consensus 136 lilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd~ 215 (358)
T TIGR02524 136 IVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPHA 215 (358)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCCE
Confidence 689999999999999999998752 1222221 111100 001111112334445566678999
Q ss_pred EEEcchh
Q 003696 454 IFIDEID 460 (802)
Q Consensus 454 LfIDEID 460 (802)
+++.|+.
T Consensus 216 i~vGEiR 222 (358)
T TIGR02524 216 ILVGEAR 222 (358)
T ss_pred EeeeeeC
Confidence 9999974
No 487
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=95.81 E-value=0.015 Score=58.82 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=27.8
Q ss_pred EEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchhhh
Q 003696 394 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 430 (802)
Q Consensus 394 VLL~GPPGTGKT~LArALA~eag~pfi~is~se~~e~ 430 (802)
|.|+|++|+|||++++.++...+.+++ ++.++...
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~ 36 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQ 36 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHH
Confidence 689999999999999999998667665 45555444
No 488
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.78 E-value=0.037 Score=55.06 Aligned_cols=25 Identities=44% Similarity=0.638 Sum_probs=22.2
Q ss_pred CceEEEEccCCCcHHHHHHHHHHhc
Q 003696 391 PKGILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 391 PkgVLL~GPPGTGKT~LArALA~ea 415 (802)
..-+.|.||.|+|||+|++.+++..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999865
No 489
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.76 E-value=0.017 Score=56.16 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=24.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCCC
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGVP 418 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~p 418 (802)
.-++|.|+.|+|||+++|.+++.++.+
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 468999999999999999999999864
No 490
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.76 E-value=0.053 Score=56.98 Aligned_cols=21 Identities=29% Similarity=0.703 Sum_probs=19.3
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 003696 393 GILLTGAPGTGKTLLAKAIAG 413 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~ 413 (802)
-+.++||+|+|||||.|++-+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 488999999999999999965
No 491
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.76 E-value=0.049 Score=64.82 Aligned_cols=94 Identities=19% Similarity=0.242 Sum_probs=56.5
Q ss_pred CCcccccCCHHHHHHHHHHHHHhcCchhhhhcCCCCCc-eEEEEccCCCcHHHHHHHHHHhcCC---CeeEeecc-chh-
Q 003696 355 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPK-GILLTGAPGTGKTLLAKAIAGEAGV---PFFYRAGS-EFE- 428 (802)
Q Consensus 355 ~tFdDViG~deaK~eL~eiV~~Lk~p~~~~~lG~~~Pk-gVLL~GPPGTGKT~LArALA~eag~---pfi~is~s-e~~- 428 (802)
.+++++.-.++..+.+.+++. .|+ .||++||+|+||||+..++.++.+- .++.+.-. ++.
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~--------------~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~ 358 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIH--------------KPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINL 358 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHH--------------hcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecC
Confidence 467777666666666655543 123 4789999999999999888887743 23322111 110
Q ss_pred ----hhhhh-hhHHHHHHHHHHHHhcCCcEEEEcchhhh
Q 003696 429 ----EMFVG-VGARRVRSLFQAAKKKAPCIIFIDEIDAV 462 (802)
Q Consensus 429 ----e~~vG-~~~k~vr~lF~~Ar~~aP~ILfIDEIDaL 462 (802)
..-+. .......++.+.+....|+||+|.||..-
T Consensus 359 ~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd~ 397 (564)
T TIGR02538 359 PGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRDL 397 (564)
T ss_pred CCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCCH
Confidence 00001 00122445666677789999999998533
No 492
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.74 E-value=0.044 Score=55.17 Aligned_cols=40 Identities=28% Similarity=0.420 Sum_probs=31.1
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccchh
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 428 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~~ 428 (802)
..+.-+.|.|+||+|||++|+++++.+ +...+.+++..+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 445679999999999999999999886 4455666665543
No 493
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.73 E-value=0.075 Score=60.29 Aligned_cols=61 Identities=21% Similarity=0.183 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCCcHHHHHHHHHHhc---CCCeeEeeccch
Q 003696 364 DDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 427 (802)
Q Consensus 364 deaK~eL~eiV~~-Lk~p~~~~~lG~~~PkgVLL~GPPGTGKT~LArALA~ea---g~pfi~is~se~ 427 (802)
++++..+.+.+.. +..+..+ ....++.++|+||+|+||||++..+|..+ +..+..+++..+
T Consensus 181 ~~v~~~~~~~L~~~l~~~~~~---~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 181 DDITDWFVPYLSGKLAVEDSF---DLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred HHHHHHHHHHhcCcEeeCCCc---eecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 4455556555543 2222211 23446789999999999999999998755 555555555443
No 494
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.72 E-value=0.065 Score=58.39 Aligned_cols=114 Identities=18% Similarity=0.265 Sum_probs=66.2
Q ss_pred CCCCCceEE--EEccCCCcHHHHHHHHHHhc---CCCeeEeeccc-hhhhhhhhh----------------HHHHHHHHH
Q 003696 387 GGKLPKGIL--LTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE-FEEMFVGVG----------------ARRVRSLFQ 444 (802)
Q Consensus 387 G~~~PkgVL--L~GPPGTGKT~LArALA~ea---g~pfi~is~se-~~e~~vG~~----------------~k~vr~lF~ 444 (802)
|+-+|+|.+ +|||+|+|||++|..++..+ +...++++... |...+.... .....-+=.
T Consensus 54 GGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 54 GGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred cCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHH
Confidence 556677765 89999999999999987766 33456665433 222111111 111111111
Q ss_pred HHHhcC--CcEEEEcchhhhccccccCC---cchHHHHHHHHHHhcccccCCCEEEEeecC
Q 003696 445 AAKKKA--PCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAATN 500 (802)
Q Consensus 445 ~Ar~~a--P~ILfIDEIDaLg~~r~~~~---~~~~~tLnqLL~eLDg~~~~~~VIVIaATN 500 (802)
..+... ..+|+||-+-++.+...... +...+.+++.+..+.+.....++.||.+..
T Consensus 134 ~~~~~~~~i~LvVVDSvaa~~r~~~~~d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQ 194 (279)
T COG0468 134 LARSGAEKIDLLVVDSVAALVRAEEIEDGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQ 194 (279)
T ss_pred HHHhccCCCCEEEEecCcccchhhhcCcchHHHHHHHHHHHHHHHHHHHHHcCcEEEEECc
Confidence 122233 77999999988866543222 223556666677776666666667666544
No 495
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.71 E-value=0.047 Score=57.49 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=20.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 003696 392 KGILLTGAPGTGKTLLAKAIAG 413 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~ 413 (802)
.-++|.||.|+|||++.+.++.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999988
No 496
>PRK14526 adenylate kinase; Provisional
Probab=95.70 E-value=0.0098 Score=62.04 Aligned_cols=34 Identities=24% Similarity=0.460 Sum_probs=27.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHhcCCCeeEeeccchh
Q 003696 393 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (802)
Q Consensus 393 gVLL~GPPGTGKT~LArALA~eag~pfi~is~se~~ 428 (802)
.++|.||||+||||+++.+|...+.+++ +..++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChHH
Confidence 3889999999999999999999886654 444543
No 497
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.66 E-value=0.28 Score=57.51 Aligned_cols=123 Identities=10% Similarity=0.174 Sum_probs=82.6
Q ss_pred CCcEEEEcchhhhccccccCCcchHHHHHHHHHHhcccccCCCEEEEeecCCCCCCChhhcCCCccceEEEccCCCHHHH
Q 003696 450 APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGR 529 (802)
Q Consensus 450 aP~ILfIDEIDaLg~~r~~~~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~pe~LD~ALlRpGRFdr~I~v~lPd~eeR 529 (802)
.|.|+++.+++.+... ....+.+..|..... ...+.+||.+.+ ..+++.|.+ +-..+.+|+|+.+++
T Consensus 81 ~~~~~vl~d~h~~~~~-----~~~~r~l~~l~~~~~---~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~ei 147 (489)
T CHL00195 81 TPALFLLKDFNRFLND-----ISISRKLRNLSRILK---TQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTESEI 147 (489)
T ss_pred CCcEEEEecchhhhcc-----hHHHHHHHHHHHHHH---hCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHHH
Confidence 3789999999999631 112333444433333 334445555544 567777764 456789999999999
Q ss_pred HHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003696 530 QEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFA 590 (802)
Q Consensus 530 ~~ILk~~l~~~~l~-~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edle~A 590 (802)
.++++.+....... ++.+++.+++.+.|+|..++++++..+.. ....++.+++...
T Consensus 148 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~-----~~~~~~~~~~~~i 204 (489)
T CHL00195 148 KKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIA-----TYKTIDENSIPLI 204 (489)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----HcCCCChhhHHHH
Confidence 99998887643332 45568899999999999999999976432 1245666665443
No 498
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.66 E-value=0.045 Score=55.84 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.8
Q ss_pred CCceEEEEccCCCcHHHHHHHHHHhc
Q 003696 390 LPKGILLTGAPGTGKTLLAKAIAGEA 415 (802)
Q Consensus 390 ~PkgVLL~GPPGTGKT~LArALA~ea 415 (802)
....+.|.||+|+|||+|.+.+++..
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33468999999999999999999976
No 499
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.64 E-value=0.012 Score=65.73 Aligned_cols=69 Identities=25% Similarity=0.380 Sum_probs=45.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHhcCC--CeeEee-ccchh-------hhh------hhhhHHHHHHHHHHHHhcCCcEEE
Q 003696 392 KGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRA-GSEFE-------EMF------VGVGARRVRSLFQAAKKKAPCIIF 455 (802)
Q Consensus 392 kgVLL~GPPGTGKT~LArALA~eag~--pfi~is-~se~~-------e~~------vG~~~k~vr~lF~~Ar~~aP~ILf 455 (802)
+++++.|++|+|||++++++.+...- ..+.+. ..++. ... .|.+.-...+++..+....|+.|+
T Consensus 179 ~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~Ii 258 (340)
T TIGR03819 179 LAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRIV 258 (340)
T ss_pred CeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeEE
Confidence 58999999999999999999886531 111111 11111 000 012223456778888888999999
Q ss_pred Ecchh
Q 003696 456 IDEID 460 (802)
Q Consensus 456 IDEID 460 (802)
|.|+-
T Consensus 259 vGEiR 263 (340)
T TIGR03819 259 VGEVR 263 (340)
T ss_pred EeCcC
Confidence 99984
No 500
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.62 E-value=0.22 Score=57.84 Aligned_cols=31 Identities=35% Similarity=0.568 Sum_probs=28.2
Q ss_pred CCCceEEEEccCCCcHHHHHHHHHHhcCCCe
Q 003696 389 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPF 419 (802)
Q Consensus 389 ~~PkgVLL~GPPGTGKT~LArALA~eag~pf 419 (802)
+.|.-++++|+||+|||++|..+|..++...
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ 283 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITR 283 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 4588999999999999999999999999863
Done!