Query 003696
Match_columns 802
No_of_seqs 532 out of 3754
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 18:04:24 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003696.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1746-1749//hhsearch_pdb/003696hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 1.0 1 1 692.2 48.2 446 349-797 6-473 (476)
2 2dhr_A FTSH; AAA+ protein, hex 1.0 1 1 668.1 43.7 430 353-786 26-472 (499)
3 4b4t_J 26S protease regulatory 1.0 1 1 432.5 27.4 255 347-601 137-396 (405)
4 4b4t_H 26S protease regulatory 1.0 1 1 422.9 27.1 253 350-602 201-458 (467)
5 4b4t_I 26S protease regulatory 1.0 1 1 422.3 27.9 252 349-600 173-429 (437)
6 4b4t_M 26S protease regulatory 1.0 1 1 418.1 26.7 250 349-598 172-426 (434)
7 4b4t_L 26S protease subunit RP 1.0 1 1 416.9 27.7 249 349-597 172-425 (437)
8 4b4t_K 26S protease regulatory 1.0 1 1 408.4 27.9 249 349-597 163-417 (428)
9 3cf2_A TER ATPase, transitiona 1.0 1 1 397.9 10.5 231 348-578 467-702 (806)
10 3cf2_A TER ATPase, transitiona 1.0 1 1 376.5 20.7 248 351-598 197-463 (806)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=1.00 E-value=1 Score=692.21 Aligned_cols=446 Identities=52% Similarity=0.854 Sum_probs=414.1
Q ss_pred CCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 677-8777766556877999999999997139224532079999549998369984999999999960997167306301
Q 003696 349 MPE-KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (802)
Q Consensus 349 ~p~-~~~~tFdDIvG~devK~eL~eiv~~Lk~p~~f~~lg~~~PkgVLL~GPPGTGKTlLAkAIA~eag~pfi~is~sel 427 (802)
.+. .+..+|+||+|++++|+++++++.+++++..|.++|.++|+|+||+||||||||++|+++|++++.||++++++++
T Consensus 6 ~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~ 85 (476)
T 2ce7_A 6 KPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDF 85 (476)
T ss_dssp CCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGT
T ss_pred CCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHH
T ss_conf 46778999988818849999999999998407287764378889738998899988899999999981998660789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCC----CCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 356543237899999999981699399984301100355467----7440999999999840465588779995049999
Q 003696 428 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (802)
Q Consensus 428 ~~~~vG~~~k~ir~lF~~Ak~~aP~IIfIDEIDaLg~~r~~~----~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~p~ 503 (802)
.+.|.|.+..+++.+|..|+...||||||||+|.++.+|+.. .....+++++|+.+||++..+.+++||++||+|+
T Consensus 86 ~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 86 VELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHH
T ss_conf 99973410889999999998459978998566654210046667676889999999999975337888889999568756
Q ss_pred CCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 89811019983126998049999899999999840299998011899870299998999999999999999992998548
Q 003696 504 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 583 (802)
Q Consensus 504 ~LD~ALlRpGRFdr~I~v~lPd~~eR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It 583 (802)
.+|++++|||||++.+.+++||.++|.+|++.++++.++..++++..++..++|++|+||.++|++|++.|.+++...|+
T Consensus 166 ~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~ 245 (476)
T 2ce7_A 166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKIT 245 (476)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred HHCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEC
T ss_conf 63633122675306861589998999999999997278860554999987557983999999999999999974898233
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC-CCCCCEEECCCCCCCCCCHH
Q ss_conf 99999999998546543210010788896777543559998733799963179980278-86642686668876301299
Q 003696 584 ATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRG-SALGMVTQLPSSDETSVSQK 662 (802)
Q Consensus 584 ~edi~~A~~ril~G~~~~~~~l~ee~~~~~A~HEaGHAiva~~l~~~~~i~kvtI~prg-~~lG~~~~~p~~~~~~~t~~ 662 (802)
.+|++.|++++++|.+++...+++++++.+||||+|||++++.+++.+++++++|+||| .++||++++|.++.+++|+.
T Consensus 246 ~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~~~~ 325 (476)
T 2ce7_A 246 MKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRN 325 (476)
T ss_dssp HHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------CCSCBHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCHH
T ss_conf 99999999998557443430321001046379986247876314776543504660574200412787673112326799
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCC---------------CCCHH
Q ss_conf 999968998317999998829998776610179999999999999507989986400258---------------99937
Q 003696 663 QLLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD---------------RPSSE 727 (802)
Q Consensus 663 ~l~~~I~v~LgGraAEei~fG~~~vtsGa~~DL~~AT~lA~~mV~~~GMs~~lG~v~~~~---------------~~s~~ 727 (802)
+++++|++||||||||+++||. +|+||+|||++||++|+.||++||||+++|++.+.. ..|++
T Consensus 326 ~l~~~i~~~l~Gr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~ 403 (476)
T 2ce7_A 326 ELLDKLTALLGGRAAEEVVFGD--VTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEE 403 (476)
T ss_dssp HHHHHHHHHTHHHHHHHHHHSS--CCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHH
T ss_conf 9999999987589999602379--77450789999999999999984888768851314777654456543345665677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCC-CCHHHHHH
Q ss_conf 77889999999999999999999999599999999999992366999999965667789998-41366521
Q 003696 728 MQSRIDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPYREGQLP-EQQEELEE 797 (802)
Q Consensus 728 ~~~~id~eV~~lL~~ay~ra~~lL~~~r~~L~~LA~~LLe~EtL~~~Ei~~il~~~~~~~~~-~~~~~~~~ 797 (802)
+...||.||+++|+++|++|++||++||+.|++||++|+|+|||+++|+.+|+.+ +..... .+++++++
T Consensus 404 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~-~~~~~~~~~~~~~~~ 473 (476)
T 2ce7_A 404 VASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE-EFEKVVEAAALEHHH 473 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHCC-CCCCHHHHHHHHHHC
T ss_conf 8999999999999999999999999969999999999997490589999999645-354235789998633
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=668.12 Aligned_cols=430 Identities=52% Similarity=0.840 Sum_probs=404.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHH
Q ss_conf 77776655687799999999999713922453207999954999836998499999999996099716730630135654
Q 003696 353 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 432 (802)
Q Consensus 353 ~~~tFdDIvG~devK~eL~eiv~~Lk~p~~f~~lg~~~PkgVLL~GPPGTGKTlLAkAIA~eag~pfi~is~sel~~~~v 432 (802)
+..+|+||+|++++|.++++++.+++++..|..++.++|+|+||+||||||||++|+++|++++.+|++++++++.+.+.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
T ss_conf 99999981883999999999999830606554146878863899899998899999999887489879983368777642
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCC----CCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHH
Q ss_conf 3237899999999981699399984301100355467----744099999999984046558877999504999989811
Q 003696 433 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPA 508 (802)
Q Consensus 433 G~~~k~ir~lF~~Ak~~aP~IIfIDEIDaLg~~r~~~----~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~p~~LD~A 508 (802)
|...++++.+|+.++...|||+||||||.++.+++.. .....+++++++.+|+++..+..++++++||.|+.||++
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~a 185 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 185 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTT
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHCCCC
T ss_conf 15899999999998715998899742988987424676787489999999999874146667618999956884543831
Q ss_pred HCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 01998312699804999989999999984029999801189987029999899999999999999999299854899999
Q 003696 509 LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 588 (802)
Q Consensus 509 LlRpGRFdr~I~v~lPd~~eR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~edi~ 588 (802)
++|||||++.+.+++||.++|.+||+.++++..+..++++..++..++|++|+||+++|++|++.|.+++...|+.+|++
T Consensus 186 Llr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~ 265 (499)
T 2dhr_A 186 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLE 265 (499)
T ss_dssp TSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHH
T ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 25566145698528999999999999998269997688899999863899799999999999999998289865799999
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEECCC-CCCCCCCHHHHHHH
Q ss_conf 99999854654321001078889677754355999873379996317998027886642686668-87630129999996
Q 003696 589 FAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPS-SDETSVSQKQLLAR 667 (802)
Q Consensus 589 ~A~~ril~G~~~~~~~l~ee~~~~~A~HEaGHAiva~~l~~~~~i~kvtI~prg~~lG~~~~~p~-~~~~~~t~~~l~~~ 667 (802)
.|++++.++.++++..+++++++.++|||+|||++++++++.+++++++|+||+.++|+++ |. ++.+++|+.+++++
T Consensus 266 ~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~g~~~--p~q~~~~~~t~~~l~~~ 343 (499)
T 2dhr_A 266 EAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGFMM--PRREDMLHWSRKRLLDQ 343 (499)
T ss_dssp HHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTTCSSH--HHHTTCCCCCHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCC--CCHHHHHCCCHHHHHHH
T ss_conf 9999872364433211247777621899998999986657887066787404777676003--41465430489999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCC------------CCCHHHHHHHHHH
Q ss_conf 8998317999998829998776610179999999999999507989986400258------------9993777889999
Q 003696 668 LDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD------------RPSSEMQSRIDAE 735 (802)
Q Consensus 668 I~v~LgGraAEei~fG~~~vtsGa~~DL~~AT~lA~~mV~~~GMs~~lG~v~~~~------------~~s~~~~~~id~e 735 (802)
|+++||||+||+++||. +|+||+|||++||++|+.||++||||+++|++.+.. ..|+++...||.|
T Consensus 344 i~~~lgGr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 421 (499)
T 2dhr_A 344 IAVALAGRAAEEIVFDD--VTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEA 421 (499)
T ss_dssp HHHHHHHHHHHHHHSCS--CCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCSSCCCCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99996437677863035--6766087999999999999998388887884353577764334434344589999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
Q ss_conf 999999999999999999599999999999992366999999965667789
Q 003696 736 VVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPYREG 786 (802)
Q Consensus 736 V~~lL~~ay~ra~~lL~~~r~~L~~LA~~LLe~EtL~~~Ei~~il~~~~~~ 786 (802)
|+++|+++|++|++||++|++.|++||++|+|+|||+++|+.+|+......
T Consensus 422 v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~~~ 472 (499)
T 2dhr_A 422 VRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLPLE 472 (499)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHCCCCCC
T ss_conf 999999999999999999799999999999974856799999996638899
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=432.52 Aligned_cols=255 Identities=37% Similarity=0.621 Sum_probs=240.0
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 346778777766556877999999999997-1392245320799995499983699849999999999609971673063
Q 003696 347 EVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 425 (802)
Q Consensus 347 ~~~p~~~~~tFdDIvG~devK~eL~eiv~~-Lk~p~~f~~lg~~~PkgVLL~GPPGTGKTlLAkAIA~eag~pfi~is~s 425 (802)
....+.|.++|+||+|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|++++.+|+.++++
T Consensus 137 ~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s 216 (405)
T 4b4t_J 137 MMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGA 216 (405)
T ss_dssp CEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHH
T ss_conf 35557999988882888999999999999987499999867999888258858999987899999998518885288868
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCC----CCHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 013565432378999999999816993999843011003554677----4409999999998404655887799950499
Q 003696 426 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNL 501 (802)
Q Consensus 426 el~~~~vG~~~k~ir~lF~~Ak~~aP~IIfIDEIDaLg~~r~~~~----~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~ 501 (802)
++..+|+|++++.++.+|..|+..+||||||||||+++++|.... .....++++||.+|||+....+|+||+|||+
T Consensus 217 ~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNr 296 (405)
T 4b4t_J 217 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNR 296 (405)
T ss_dssp GGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 95113354689999999999987099467653341111577888999768999999999996043388887578812698
Q ss_pred CCCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99898110199831269980499998999999998402999980118998702999989999999999999999929985
Q 003696 502 PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEK 581 (802)
Q Consensus 502 p~~LD~ALlRpGRFdr~I~v~lPd~~eR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~ 581 (802)
|+.||+|++||||||+.|+|++||.++|.+||+.|+++.++..++|+..+|+.|+||||+||.++|++|++.|.+++...
T Consensus 297 pd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~ 376 (405)
T 4b4t_J 297 LDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIH 376 (405)
T ss_dssp SSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSB
T ss_pred HHHCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 14489967287767669976996999999999998559999965799999987799999999999999999999869987
Q ss_pred CCHHHHHHHHHHHHCCCCCC
Q ss_conf 48999999999985465432
Q 003696 582 LTATELEFAKDRILMGTERK 601 (802)
Q Consensus 582 It~edi~~A~~ril~G~~~~ 601 (802)
|+.+||+.|+++++....+.
T Consensus 377 vt~~Df~~Al~~v~~~~~~~ 396 (405)
T 4b4t_J 377 VTQEDFELAVGKVMNKNQET 396 (405)
T ss_dssp CCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHCCCCCC
T ss_conf 59999999999985726555
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=422.95 Aligned_cols=253 Identities=40% Similarity=0.636 Sum_probs=240.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCHH
Q ss_conf 778777766556877999999999997-1392245320799995499983699849999999999609971673063013
Q 003696 350 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 428 (802)
Q Consensus 350 p~~~~~tFdDIvG~devK~eL~eiv~~-Lk~p~~f~~lg~~~PkgVLL~GPPGTGKTlLAkAIA~eag~pfi~is~sel~ 428 (802)
.+.|.++|+||+|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHHH
T ss_conf 57999987885459999999999999884299999877999998147648999809999999984468986998869950
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCC----CCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 565432378999999999816993999843011003554677----4409999999998404655887799950499998
Q 003696 429 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 504 (802)
Q Consensus 429 ~~~vG~~~k~ir~lF~~Ak~~aP~IIfIDEIDaLg~~r~~~~----~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~p~~ 504 (802)
++|+|++++.++.+|..|+..+||||||||+|+++.+|.... .....+++++|.+||++....+|+||+|||+|+.
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf 26677899999999999876178467522321101355676778627899999999998655578883798828789311
Q ss_pred CCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 98110199831269980499998999999998402999980118998702999989999999999999999929985489
Q 003696 505 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 584 (802)
Q Consensus 505 LD~ALlRpGRFdr~I~v~lPd~~eR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It~ 584 (802)
||+|++||||||++|+|++||.++|.+||+.|+++..+..++++..+|+.|+||||+||.++|++|++.|++++...|+.
T Consensus 361 LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~ 440 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATE 440 (467)
T ss_dssp BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCH
T ss_pred CCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 79546366655079983896999999999998548999877799999977799999999999999999999838876699
Q ss_pred HHHHHHHHHHHCCCCCCC
Q ss_conf 999999999854654321
Q 003696 585 TELEFAKDRILMGTERKT 602 (802)
Q Consensus 585 edi~~A~~ril~G~~~~~ 602 (802)
+||..|+++++.|.++.+
T Consensus 441 ~Df~~Al~kV~~g~~k~s 458 (467)
T 4b4t_H 441 KDFLKAVDKVISGYKKFS 458 (467)
T ss_dssp HHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHCCCCCCH
T ss_conf 999999999964745612
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=422.32 Aligned_cols=252 Identities=36% Similarity=0.635 Sum_probs=238.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 6778777766556877999999999997-139224532079999549998369984999999999960997167306301
Q 003696 349 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (802)
Q Consensus 349 ~p~~~~~tFdDIvG~devK~eL~eiv~~-Lk~p~~f~~lg~~~PkgVLL~GPPGTGKTlLAkAIA~eag~pfi~is~sel 427 (802)
..+.+.++|+||.|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred ECCCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHHHH
T ss_conf 33689986005576999999999999998769999986799977788448899963999999999985998799887995
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCC----CCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 3565432378999999999816993999843011003554677----440999999999840465588779995049999
Q 003696 428 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (802)
Q Consensus 428 ~~~~vG~~~k~ir~lF~~Ak~~aP~IIfIDEIDaLg~~r~~~~----~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~p~ 503 (802)
..+|+|++++.++.+|..|+..+||||||||+|+++.+|.... .....++++||.+||++..+.+|+||+|||+|+
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd 332 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE 332 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCST
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHH
T ss_conf 31447669999999999998659918987612220366778887765899999999999724767889979999579805
Q ss_pred CCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 89811019983126998049999899999999840299998011899870299998999999999999999992998548
Q 003696 504 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 583 (802)
Q Consensus 504 ~LD~ALlRpGRFdr~I~v~lPd~~eR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It 583 (802)
.||+||+||||||++|+|++||.++|.+||+.|+++..+..++|+..+|+.|+||||+||.++|++|++.|.+++...|+
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It 412 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVT 412 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBC
T ss_pred HCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 55998864886027998089699999999999964899997679999997679998999999999999999984899669
Q ss_pred HHHHHHHHHHHHCCCCC
Q ss_conf 99999999998546543
Q 003696 584 ATELEFAKDRILMGTER 600 (802)
Q Consensus 584 ~edi~~A~~ril~G~~~ 600 (802)
.+||+.|++++..+..+
T Consensus 413 ~eDf~~Al~rv~~~~~~ 429 (437)
T 4b4t_I 413 AEDFKQAKERVMKNKVE 429 (437)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCCH
T ss_conf 99999999987079873
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=418.13 Aligned_cols=250 Identities=38% Similarity=0.621 Sum_probs=235.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 6778777766556877999999999997-139224532079999549998369984999999999960997167306301
Q 003696 349 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (802)
Q Consensus 349 ~p~~~~~tFdDIvG~devK~eL~eiv~~-Lk~p~~f~~lg~~~PkgVLL~GPPGTGKTlLAkAIA~eag~pfi~is~sel 427 (802)
..+.+.++|+||+|++++|++|++.+.+ +++|+.|.+.|.++|+|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l 251 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL 251 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred CCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHH
T ss_conf 68897998676095799999999999999749999986799988726877949998899999999995998899864464
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCC----CHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 35654323789999999998169939998430110035546774----40999999999840465588779995049999
Q 003696 428 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG----HTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (802)
Q Consensus 428 ~~~~vG~~~k~ir~lF~~Ak~~aP~IIfIDEIDaLg~~r~~~~~----~~~~tLnqLL~eLDg~~~~~~VIVIaATN~p~ 503 (802)
..+|+|++++.++.+|..|+..+||||||||+|+++.+|..... ....++++||.+|||+..+.+|+||+|||+|+
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~ 331 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVD 331 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCC
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCH
T ss_conf 31345638999999999998619908960332566522577888874699999999999713668889989999489922
Q ss_pred CCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 89811019983126998049999899999999840299998011899870299998999999999999999992998548
Q 003696 504 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 583 (802)
Q Consensus 504 ~LD~ALlRpGRFdr~I~v~lPd~~eR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It 583 (802)
.||+|++||||||++|+|++||.++|.+||+.|+++..+..++++..+|+.|+||||+||.++|++|++.|.+++...|+
T Consensus 332 ~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~ 411 (434)
T 4b4t_M 332 VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVK 411 (434)
T ss_dssp CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBC
T ss_pred HCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 33996715774038998089599999999999856899987679999998689989999999999999999986998769
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999999985465
Q 003696 584 ATELEFAKDRILMGT 598 (802)
Q Consensus 584 ~edi~~A~~ril~G~ 598 (802)
.+||..|+.++....
T Consensus 412 ~~Df~~Al~~v~~~~ 426 (434)
T 4b4t_M 412 HEDFVEGISEVQARK 426 (434)
T ss_dssp HHHHHHHHHSCSSSC
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999973777
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=416.94 Aligned_cols=249 Identities=40% Similarity=0.645 Sum_probs=236.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 6778777766556877999999999997-139224532079999549998369984999999999960997167306301
Q 003696 349 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (802)
Q Consensus 349 ~p~~~~~tFdDIvG~devK~eL~eiv~~-Lk~p~~f~~lg~~~PkgVLL~GPPGTGKTlLAkAIA~eag~pfi~is~sel 427 (802)
..+.+.++|+||+|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 172 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l 251 (437)
T 4b4t_L 172 SFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGI 251 (437)
T ss_dssp EEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred ECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHH
T ss_conf 31599989667178599999999999998749999986798978769998999984999999999985999899841462
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCC----CCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 3565432378999999999816993999843011003554677----440999999999840465588779995049999
Q 003696 428 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (802)
Q Consensus 428 ~~~~vG~~~k~ir~lF~~Ak~~aP~IIfIDEIDaLg~~r~~~~----~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~p~ 503 (802)
.++|+|++++.++.+|..|+..+||||||||+|+++.+|.... .....++++||.+|||+....+|+||+|||+|+
T Consensus 252 ~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~ 331 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPD 331 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCH
T ss_conf 05520178999999999998638964642044333333344788753689999999999834666779869999339903
Q ss_pred CCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 89811019983126998049999899999999840299998011899870299998999999999999999992998548
Q 003696 504 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 583 (802)
Q Consensus 504 ~LD~ALlRpGRFdr~I~v~lPd~~eR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~It 583 (802)
.||+||+||||||+.|+|++||.++|.+||+.|+++.....++|+..+|+.|.||||+||.++|++|++.|.+++...|+
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~ 411 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHIN 411 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred HHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 31897827771020013599699999999999865899986458999997689999999999999999999986998779
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999998546
Q 003696 584 ATELEFAKDRILMG 597 (802)
Q Consensus 584 ~edi~~A~~ril~G 597 (802)
.+||..|++++...
T Consensus 412 ~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 412 PDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999998750
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=408.40 Aligned_cols=249 Identities=37% Similarity=0.574 Sum_probs=234.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 6778777766556877999999999997-139224532079999549998369984999999999960997167306301
Q 003696 349 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 427 (802)
Q Consensus 349 ~p~~~~~tFdDIvG~devK~eL~eiv~~-Lk~p~~f~~lg~~~PkgVLL~GPPGTGKTlLAkAIA~eag~pfi~is~sel 427 (802)
..+.+.++|+||+|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 77899998888516999999999999998739999986799988658888989988899999999986799699933044
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCC----CCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 3565432378999999999816993999843011003554677----440999999999840465588779995049999
Q 003696 428 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 503 (802)
Q Consensus 428 ~~~~vG~~~k~ir~lF~~Ak~~aP~IIfIDEIDaLg~~r~~~~----~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~p~ 503 (802)
.++|+|.+++.++.+|..|+..+||||||||+|+++.+|.... ....+++++||++|||+....+|+||+|||+|+
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred HCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHH
T ss_conf 31454605999999999999739974630022433035567878887189999999999843878779979999619815
Q ss_pred CCCHHHCCCCCCCEEEECC-CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8981101998312699804-999989999999984029999801189987029999899999999999999999299854
Q 003696 504 ILDPALTRPGRFDRHIVVP-NPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKL 582 (802)
Q Consensus 504 ~LD~ALlRpGRFdr~I~v~-lPd~~eR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~~~I 582 (802)
.||+|++||||||+.|+|| +||.++|..||+.++++.++..++|+..+|..|.||||+||.++|++|++.|.+++...|
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i 402 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVI 402 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred HCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 56966636875159998199999999999999985579999635899999777998899999999999999998799877
Q ss_pred CHHHHHHHHHHHHCC
Q ss_conf 899999999998546
Q 003696 583 TATELEFAKDRILMG 597 (802)
Q Consensus 583 t~edi~~A~~ril~G 597 (802)
+.+||+.|+.+++..
T Consensus 403 ~~~d~~~A~~~~~~~ 417 (428)
T 4b4t_K 403 LQSDLEEAYATQVKT 417 (428)
T ss_dssp CHHHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 999999999976176
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=397.94 Aligned_cols=231 Identities=40% Similarity=0.717 Sum_probs=204.7
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 46778777766556877999999999997-13922453207999954999836998499999999996099716730630
Q 003696 348 VMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 426 (802)
Q Consensus 348 ~~p~~~~~tFdDIvG~devK~eL~eiv~~-Lk~p~~f~~lg~~~PkgVLL~GPPGTGKTlLAkAIA~eag~pfi~is~se 426 (802)
...+.+.++|+||.|++++|++|++.+.+ +++|+.|.+.|.++|+|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 467 ~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~ 546 (806)
T 3cf2_A 467 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 546 (806)
T ss_dssp CCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHH
T ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCH
T ss_conf 44457887888817889999999999975666899997148888860798668778963999999998389668742411
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCC----CCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 1356543237899999999981699399984301100355467----744099999999984046558877999504999
Q 003696 427 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 502 (802)
Q Consensus 427 l~~~~vG~~~k~ir~lF~~Ak~~aP~IIfIDEIDaLg~~r~~~----~~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~p 502 (802)
+..+|+|++++.++.+|..|+..+||||||||||+++.+|+.. .+...+++++||.+|||+....+|+||+|||+|
T Consensus 547 l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p 626 (806)
T 3cf2_A 547 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 626 (806)
T ss_dssp HHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCS
T ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 21033436899999999999972996352042567763158888898669999999999997487877998999937980
Q ss_pred CCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 9898110199831269980499998999999998402999980118998702999989999999999999999929
Q 003696 503 DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG 578 (802)
Q Consensus 503 ~~LD~ALlRpGRFdr~I~v~lPd~~eR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~ 578 (802)
+.||+|++||||||++|+|++||.++|.+||+.++++.++..++|+..+|+.|.||||+||.++|++|++.|.++.
T Consensus 627 ~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~ 702 (806)
T 3cf2_A 627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp SSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 4389847177855079997996999999999998567999877899999976899999999999999999999999
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=376.48 Aligned_cols=248 Identities=41% Similarity=0.645 Sum_probs=230.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCHHH
Q ss_conf 78777766556877999999999997-13922453207999954999836998499999999996099716730630135
Q 003696 351 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 429 (802)
Q Consensus 351 ~~~~~tFdDIvG~devK~eL~eiv~~-Lk~p~~f~~lg~~~PkgVLL~GPPGTGKTlLAkAIA~eag~pfi~is~sel~~ 429 (802)
..+.++|+||.|++++|++|++++.+ +++|+.|.++|.++|+|||||||||||||++|+++|++++.+|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHC
T ss_conf 58999903514999999999999998751989886358999975897798999889999999997198399997379543
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCC-CCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHH
Q ss_conf 65432378999999999816993999843011003554677-44099999999984046558877999504999989811
Q 003696 430 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPA 508 (802)
Q Consensus 430 ~~vG~~~k~ir~lF~~Ak~~aP~IIfIDEIDaLg~~r~~~~-~~~~~tLnqLL~eLDg~~~~~~VIVIaATN~p~~LD~A 508 (802)
+|+|++++.++.+|..|+..+||||||||||+++.+|+... .....++++|+.+||++..+.+|+||++||+|+.||++
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~A 356 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCHH
T ss_conf 33167899999999999972992999851002334457788739999999999997466666987999966980326988
Q ss_pred HCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC---------
Q ss_conf 01998312699804999989999999984029999801189987029999899999999999999999299---------
Q 003696 509 LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG--------- 579 (802)
Q Consensus 509 LlRpGRFdr~I~v~lPd~~eR~~ILk~~l~~~~l~~dvdl~~LA~~t~G~SgaDL~nLvn~Aa~~Aa~~~~--------- 579 (802)
++|||||++.|++++||..+|.+||+.++++.....++++..+|..|+||+|+||.++|++|++.|.++..
T Consensus 357 LrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~ 436 (806)
T 3cf2_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436 (806)
T ss_dssp TTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCC
T ss_pred HHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 85786361688668979899999999985689988643899999756899899999999999999998414512000133
Q ss_pred --------CCCCHHHHHHHHHHHHCCC
Q ss_conf --------8548999999999985465
Q 003696 580 --------EKLTATELEFAKDRILMGT 598 (802)
Q Consensus 580 --------~~It~edi~~A~~ril~G~ 598 (802)
..|+.+|+..|+..+....
T Consensus 437 ~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 437 IDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp CSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred CCHHHHCCCEEEHHHHHHHHHHCCCCC
T ss_conf 204552255651999999997287831
Done!