Query 003697
Match_columns 802
No_of_seqs 172 out of 726
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 04:19:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02277 H(+) -translocating i 100.0 4E-260 8E-265 2177.1 69.8 729 74-802 2-730 (730)
2 TIGR01104 V_PPase vacuolar-typ 100.0 1E-251 3E-256 2096.7 66.6 672 69-801 5-690 (697)
3 PLN02255 H(+) -translocating i 100.0 2E-248 4E-253 2081.9 69.7 689 69-801 11-754 (765)
4 PF03030 H_PPase: Inorganic H+ 100.0 1E-248 2E-253 2087.8 46.3 679 75-798 1-682 (682)
5 PRK00733 hppA membrane-bound p 100.0 2E-245 5E-250 2045.1 65.0 659 89-801 1-660 (666)
6 COG3808 OVP1 Inorganic pyropho 100.0 1E-239 2E-244 1926.4 57.1 678 67-801 5-699 (703)
7 COG3104 PTR2 Dipeptide/tripept 81.7 18 0.00038 42.8 12.8 75 268-372 132-207 (498)
8 PRK00733 hppA membrane-bound p 52.4 5.6E+02 0.012 31.9 18.0 143 157-318 484-644 (666)
9 PF06800 Sugar_transport: Suga 50.2 3.9E+02 0.0085 29.5 14.2 126 324-475 81-206 (269)
10 PF05313 Pox_P21: Poxvirus P21 49.6 3E+02 0.0066 29.0 12.2 63 28-96 47-115 (189)
11 PRK08382 putative monovalent c 47.9 55 0.0012 34.5 7.0 70 549-633 1-76 (201)
12 PRK11677 hypothetical protein; 47.8 22 0.00047 35.3 3.8 32 425-456 3-34 (134)
13 KOG0860 Synaptobrevin/VAMP-lik 41.3 1E+02 0.0022 30.2 7.0 36 84-119 47-88 (116)
14 KOG2881 Predicted membrane pro 40.9 5.6E+02 0.012 28.7 13.6 78 31-108 84-172 (294)
15 PF11712 Vma12: Endoplasmic re 39.3 1.2E+02 0.0025 29.9 7.4 27 384-410 70-98 (142)
16 COG1288 Predicted membrane pro 37.7 1.4E+02 0.003 35.4 8.6 62 72-133 224-291 (481)
17 PF03606 DcuC: C4-dicarboxylat 37.1 4.6E+02 0.01 30.7 13.0 61 72-133 205-269 (465)
18 COG4214 XylH ABC-type xylose t 33.4 3.4E+02 0.0073 31.5 10.5 135 73-210 188-338 (394)
19 PF12331 DUF3636: Protein of u 32.4 30 0.00064 35.0 2.1 22 521-542 49-70 (149)
20 PF12670 DUF3792: Protein of u 30.0 4.2E+02 0.0091 25.2 9.3 100 321-436 14-114 (116)
21 PF00344 SecY: SecY translocas 28.7 2E+02 0.0042 32.3 7.9 84 612-699 239-322 (346)
22 PF03030 H_PPase: Inorganic H+ 28.0 1.1E+03 0.023 29.7 14.3 98 67-182 255-352 (682)
23 PF02355 SecD_SecF: Protein ex 27.7 3E+02 0.0066 28.5 8.5 44 634-684 91-137 (189)
24 TIGR00966 3a0501s07 protein-ex 27.3 1.2E+02 0.0027 32.3 5.8 74 644-735 171-245 (246)
25 COG4042 Predicted membrane pro 27.0 2.1E+02 0.0045 27.1 6.3 65 14-94 36-102 (104)
26 PF07895 DUF1673: Protein of u 25.3 3.3E+02 0.0071 28.7 8.4 18 156-173 154-171 (205)
27 PF00957 Synaptobrevin: Synapt 25.3 2.4E+02 0.0052 25.2 6.4 39 96-134 40-82 (89)
28 PRK11588 hypothetical protein; 24.8 7.2E+02 0.016 30.0 11.8 61 72-133 237-302 (506)
29 PF07226 DUF1422: Protein of u 24.8 5.3E+02 0.012 25.4 8.9 60 59-122 28-91 (117)
30 TIGR00245 conserved hypothetic 24.5 75 0.0016 34.5 3.6 84 616-714 123-206 (248)
31 PF12805 FUSC-like: FUSC-like 23.9 9.1E+02 0.02 26.1 11.7 35 420-456 70-104 (284)
32 COG3548 Predicted integral mem 23.6 6.5E+02 0.014 26.8 10.0 73 33-105 72-151 (197)
33 PF11239 DUF3040: Protein of u 23.5 96 0.0021 27.8 3.5 24 642-673 8-31 (82)
34 TIGR01104 V_PPase vacuolar-typ 22.6 6.9E+02 0.015 31.3 11.3 63 249-318 604-674 (697)
35 PF04911 ATP-synt_J: ATP synth 22.3 36 0.00078 29.1 0.5 7 292-298 39-45 (54)
36 PF08006 DUF1700: Protein of u 22.2 8.2E+02 0.018 24.7 13.2 16 211-226 143-158 (181)
37 PRK13022 secF preprotein trans 22.0 4.8E+02 0.01 28.8 9.2 38 644-692 200-237 (289)
38 PF06295 DUF1043: Protein of u 20.8 94 0.002 30.3 3.1 25 428-452 2-26 (128)
39 PF00110 wnt: wnt family; Int 20.2 87 0.0019 34.9 3.1 23 633-655 22-44 (310)
No 1
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=100.00 E-value=3.8e-260 Score=2177.06 Aligned_cols=729 Identities=89% Similarity=1.371 Sum_probs=667.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCcccccccCCC
Q 003697 74 VCIITFILSIYLCKWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQEASGIGRS 153 (802)
Q Consensus 74 ~~~~~l~~a~~~~~~v~~~~~G~~~m~~Is~~I~eGA~afL~~qy~~i~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~ 153 (802)
+|+++|+||+++++||+|||+|+||||||+++|||||++||+||||+++++++++++++++.+.....++.+...+.++.
T Consensus 2 ~~~l~l~~a~~~~~~v~~~~~G~~~M~~Ia~~I~eGA~afL~~qyk~i~~~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (730)
T PLN02277 2 VCIISLLFSLYLTKWVLAKDEGPPEMVEISDAIRDGAEGFFRTQYGTISKMAVVLAFVILGIYLFRSLTPQQEAAGLGRA 81 (730)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccch
Confidence 58999999999999999999999999999999999999999999999999999999988654332211122223345555
Q ss_pred cchhhHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhHHHHhhcHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 003697 154 NSACITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYATFYVWL 233 (802)
Q Consensus 154 ~~~~~~a~~Fl~Ga~~S~laGyiGM~vat~aN~Rta~aA~~~~~~al~vafrgG~vmGl~vvgl~llgl~~l~~~~~~~~ 233 (802)
.++|++++||++|++||++|||+|||+|||+|+|||+|||++++++|++|||||+||||+|+||+|||++++|+++..++
T Consensus 82 ~~~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aNvRtA~AA~~~~~~al~vAfrgGaVmGl~vvgl~Llgl~~~~~i~~~~~ 161 (730)
T PLN02277 82 TSAYITVASFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSALVVVGMTVLGVAILYATFYVWL 161 (730)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cCCCCCCCccccchhhhhhhhhHHHHHHHHHHhhcchhhhhhhhccccchhhhcCCCCCCCCCcchhccccCCCcccccc
Q 003697 234 GVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAA 313 (802)
Q Consensus 234 ~~~~~~~~~~~~~~~~i~gfg~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AG 313 (802)
....+...+..+.+++++||+||||++|||+|+||||||||||||||||||||+||||||||||||||||||||||||||
T Consensus 162 ~~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGDvAG 241 (730)
T PLN02277 162 GVDSPGGMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAA 241 (730)
T ss_pred cccccccccchhHHHHHHhhhccHHHHHHHHHHcCceeeeccccchhhhhhhhcCCCCCCCCCchHHHHHhCCccccccc
Confidence 31111111123367799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhheeccCCCCCCCCCCChHHHHHHHH
Q 003697 314 RGADLFESIAAEIISAMILGGTMVQRCKLENPSGFILFPLVVHSFDLVISSIGILSIRSSRDSSVKAPIEDPMAILQKGY 393 (802)
Q Consensus 314 mgADLFESy~~siiaamilg~~~~~~~~~~~~~~~~~~Pl~v~a~gii~Siig~~~v~~~~~~~~~~~~~~~~~aL~~g~ 393 (802)
|||||||||+++++++|+||..++.+.++......++|||+++++||++|++|+|+||.+++++.+.+++||+++||+|+
T Consensus 242 mgADLFESy~~siiaamiLg~~~~~~~~~~~~~~~v~~Pl~i~~~gii~Siig~~~vr~~~~~~~~~~~~~p~~aL~~g~ 321 (730)
T PLN02277 242 RGADLFESIAAEIISAMILGGTMAKRCKIEDPSGFILFPLVVHSFDLVVSSIGILSIKGTRDSSVKSPVEDPMAVLQKGY 321 (730)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccCcccccccchHHHHHHHHHHHHHHHHHheEeccCccccccccccHHHHHHHHH
Confidence 99999999999999999999765432222111245899999999999999999999997665444455679999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHhhcCCCchhHHHHHHh
Q 003697 394 SVTVVLAVLTFGASTRWLLYTEQAPSAWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRALALSSSTGHGTNIIAGVS 473 (802)
Q Consensus 394 ~vs~~l~~v~~~~~~~~~l~~~~~~~~~~~~f~~~~iGl~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnII~Gla 473 (802)
|+|++++++++|++++|++.+...+..||++|+|+++|+++|++|+++||||||++||||||||++|+||||||||+||+
T Consensus 322 ~vs~~l~~v~~~~~~~~~l~~~~~~~~~~~~f~~~~~Gl~~g~lI~~iTeYYTs~~y~PV~~IA~aS~tG~ATnII~Gla 401 (730)
T PLN02277 322 SVTIILAVVTFGASTRWLLYTEQAPSAWFNFALCGLVGIITAYAFVWISQYYTDYKYEPVRTLALASTTGHGTNIIAGVS 401 (730)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHeeeeeCCCCCCcHHHHHHHhCcChHHHHHHHHH
Confidence 99999999999999998874322233578999999999999999999999999999999999999999999999999999
Q ss_pred hhhccchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHhhhhhHhhhhccccccccCCccccccCCCC
Q 003697 474 LGLESTAPPVLVISVSIVSAYWLGQTSGLVDESGNPIGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQP 553 (802)
Q Consensus 474 ~Gm~St~~Pvl~I~~ai~~sy~l~~~~~~~~~~~~~~~GlyGiAlAa~GMLst~g~~la~DayGPIaDNAgGIaEMs~l~ 553 (802)
+||+||+||+++|+++|++||+++.++++.+..++...|+||+|+|++|||||++++|++|+||||+||||||+|||+||
T Consensus 402 ~Gm~St~~Pvl~I~~ai~~sy~l~~~~~~~~~~~~~~~GlyGialAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~ 481 (730)
T PLN02277 402 LGLESTALPVLVISVAIISAYWLGNTSGLVDENGNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQP 481 (730)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHhhcceeEEeecccCcccCcccHHHHccCC
Confidence 99999999999999999999999988877776677778999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhhccccCCcccccchhhhHHHHHHHHHHHHHHHHHHhhhhcCCCCcccccCCchHHHHHHHHHHHHHHHHHHH
Q 003697 554 ESVREITDVLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVATFAQEPFKQVDIAIPEVFVGGLLGSMLIFLFSGWA 633 (802)
Q Consensus 554 ~~VR~~tD~LDavGNTT~Ai~KGfAIGSAaLaal~LF~ay~~~~~~~~~~~~~~~~l~~P~Vl~GlliG~mlpflFSa~~ 633 (802)
||||||||+||++||||||+|||||||||+|++|+||++|+++++.....+++.+||.||+|++|+|+|+|+|||||+++
T Consensus 482 ~~VR~~TD~LDavGNTTaAi~KGfAIGSAaL~alaLF~ay~~~~~~~~~~~~~~~~l~~p~Vl~GlliG~mlpflFsal~ 561 (730)
T PLN02277 482 ESVREITDLLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVSAFAGVPFKEVDIAIPEVFVGGLLGSMLIFLFSAWA 561 (730)
T ss_pred chhhhhccccccccCcchhhcccchhHHHHHHHHHHHHHHHHHhhhhhccccceeeCCCcHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998654332245699999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHhcccCcCccccccCCChhhHHHHhhHHHHHhhhhhhhHHHHhhHhhHHhhhhhhccccccchh
Q 003697 634 CSAVGKTAQEVVNEVRRQFIERPGIMEYKEKPDYARCVAIVASASLREMIKPGALAIISPLVIGLLFRILGYYTGHALLG 713 (802)
Q Consensus 634 m~aVg~aA~~mV~EVRRQFre~pGimeg~~kPDY~~cV~I~T~~AlkeMi~Pgllavl~Pi~vG~~f~~~~~~~~~~llG 713 (802)
|+||||+|++||||||||||||||||||++||||+||||||||+||||||+|++|+|++|+++|++||.+|.+++++++|
T Consensus 562 m~AVg~aA~~mVeEVRRQFreipGi~eG~~kPdY~~cV~I~T~aAlreMi~Pgllail~Pi~vg~~~~~~G~~~~~~~~g 641 (730)
T PLN02277 562 CAAVGRTAQEVVNEVRRQFAERPGIMDYKEKPDYGRCVAIVASAALREMIKPGALAVISPIVVGLVFRILGYATGQPLLG 641 (730)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccCCCCCChHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhhhhccccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhhcCCCCCCCccccccccccccCCCCCCCCCchhHHHHHHHHHH
Q 003697 714 AKVVAALLMFATVSGILMALFLNTAGGAWDNAKKFIETGALGGKGSDTHKAAVTGDTVGDPFKDTAGPSLHVLIKMLATI 793 (802)
Q Consensus 714 ~~al~G~L~G~~vsG~~~Ai~m~NaGGAWDNAKKyIE~g~~gGKgS~aHkAaVvGDTVGDPfKDTaGPSlniLIKlms~v 793 (802)
+++++|+|+|++++|++||+||+|+||||||||||||+|+|||||||+|||||||||||||||||||||||||||+|++|
T Consensus 642 ~~al~GlL~G~~vsGv~lAi~m~NaGGAWDNAKKyIE~G~~ggKGS~aHkAaVvGDTVGDPfKDTaGPSlNiLIKlm~~v 721 (730)
T PLN02277 642 AKVVAGMLMFATVSGILMALFLNTAGGAWDNAKKYIETGALGGKGSEAHKAAVTGDTVGDPFKDTAGPSIHVLIKMLATI 721 (730)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhHHhHHHHHhcCCCCCCCcHHhhccccCCCCCCcccccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccC
Q 003697 794 TLVMAPIFL 802 (802)
Q Consensus 794 slv~ap~~~ 802 (802)
||||+|+|+
T Consensus 722 slV~ap~~~ 730 (730)
T PLN02277 722 TLVMAPMFL 730 (730)
T ss_pred HHHHHHhhC
Confidence 999999985
No 2
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=100.00 E-value=1.2e-251 Score=2096.72 Aligned_cols=672 Identities=43% Similarity=0.713 Sum_probs=628.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCccccc
Q 003697 69 VFVFSVCIITFILSIYLCKWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQEAS 148 (802)
Q Consensus 69 ~~~~~~~~~~l~~a~~~~~~v~~~~~G~~~m~~Is~~I~eGA~afL~~qy~~i~~~~i~~~~~i~~~~~~~~~~~~~~~~ 148 (802)
++++++++++++||+++++||+|||+|+|+|||||++|||||++||+||||++++|.+++++++++.+... +
T Consensus 5 ~~~~~~~~~gl~~a~~~~~~v~~~~~G~~~M~~Ia~~I~eGA~afL~rqyk~i~~~~vi~~v~l~~~~~~~---~----- 76 (697)
T TIGR01104 5 ILIPVCAVIGIAYAVLQWVWVSRVKLGTAKMAEIQQAISEGATAFLFTEYKYVAVFMVAFAVLIFVFLGSR---E----- 76 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---c-----
Confidence 35678999999999999999999999999999999999999999999999999999999999886432100 0
Q ss_pred ccCCCcchhhHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhHHHHhhcHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 003697 149 GIGRSNSACITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYAT 228 (802)
Q Consensus 149 ~~~~~~~~~~~a~~Fl~Ga~~S~laGyiGM~vat~aN~Rta~aA~~~~~~al~vafrgG~vmGl~vvgl~llgl~~l~~~ 228 (802)
..+++++++|++|++||.+|||+|||+|||+|+|||+||+++++++|++|||||+||||+|+||+|+|++++|++
T Consensus 77 -----~~~~~~a~~Fl~Ga~~S~laG~iGM~iat~aNvRtA~AA~~~~~~al~vafrgGaVmGl~vvgl~Llgl~~~~~i 151 (697)
T TIGR01104 77 -----GFSDFSTVAFLLGAVTSLLAGYLGMKIATYANARTTLEARKGVGKALIVAFRSGAVMGFLLAGLGLLVLYITILV 151 (697)
T ss_pred -----cchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 012379999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCccccchhhhhhhhhHHHHHHHHHHhhcchhhhhhhhccccchhhhcCCCCCCCCCcchhccccCCCc
Q 003697 229 FYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNV 308 (802)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~gfg~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNV 308 (802)
|+.++. . +..+.+++++||+||+|++|||+|+||||||||||||||||||||+|||||||||||||||||||||
T Consensus 152 ~~~~~~----~--~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNV 225 (697)
T TIGR01104 152 FKIYYG----D--DWEGLFEPITGYGFGASSMALFGRVGGGIYTKAADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNV 225 (697)
T ss_pred HhcccC----c--hhhhhhhHHhhhcccHHHHHHHHHHcCceeeeccccchhhhcccccCCCCCCCCCchhHHHhcCCcc
Confidence 875431 1 2233567999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHhh-hhhcccCCCccchHHHHHHHHHHHHHHHHHhhheeccCCCCCCCCCCChHH
Q 003697 309 GDCAARGADLFESIAAEIISAMILGGTM-VQRCKLENPSGFILFPLVVHSFDLVISSIGILSIRSSRDSSVKAPIEDPMA 387 (802)
Q Consensus 309 GD~AGmgADLFESy~~siiaamilg~~~-~~~~~~~~~~~~~~~Pl~v~a~gii~Siig~~~v~~~~~~~~~~~~~~~~~ 387 (802)
||||||||||||||+++++++|+|+... + +.+.++..++|||+++++||++|++|+++||.++ ++||++
T Consensus 226 GD~AGmgADlFESy~~s~iaamvlg~~~~~---~~~~~~~~v~~Pl~~~~~gi~~Siig~~~v~~~~-------~~~~~~ 295 (697)
T TIGR01104 226 GDIAGMGADLFESYAESSCAALVLASISSF---GLPHDFTAMLYPLALSSVGILVCLLTTLFVKIKP-------VKEIEP 295 (697)
T ss_pred cchhcccchHHHHHHHHHHHHHHHhhhhhc---ccccchhHHHHHHHHHHHHHHHHHHHheEEecCC-------CCCHHH
Confidence 9999999999999999999999999632 1 1111223589999999999999999999998765 458999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCC--------CCcchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHhh
Q 003697 388 ILQKGYSVTVVLAVLTFGASTRWLLYTEQ--------APSAWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRALALS 459 (802)
Q Consensus 388 aL~~g~~vs~~l~~v~~~~~~~~~l~~~~--------~~~~~~~~f~~~~iGl~~g~lI~~~TeYyTs~~~~PVr~IA~a 459 (802)
+||||+|+|++++++.+|++++|+++... ....||++|+|+++|+++|++|+++||||||++||||||||++
T Consensus 296 aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~Gl~~g~lI~~iTeYyTs~~y~PV~~IA~a 375 (697)
T TIGR01104 296 ALKKQLIISTVLMTVGVAVISWVALPTGFTIFNFGTQKEVSNWQLFLCVAVGLWAGLLIGFVTEYYTSNAYSPVQDVADS 375 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHHHHHHHHHHHHhheeecCCCCCcHHHHHHH
Confidence 99999999999999999999999986421 1235678999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHhhhhccchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHhhhhhHhhhhcccccc
Q 003697 460 SSTGHGTNIIAGVSLGLESTAPPVLVISVSIVSAYWLGQTSGLVDESGNPIGGLFGTAVATMGMLSTAAYVLTMDMFGPI 539 (802)
Q Consensus 460 s~tG~AtnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~~~~~~~~~~~~~~~GlyGiAlAa~GMLst~g~~la~DayGPI 539 (802)
|+||||||||+||++||+||+||+++|+++++.||+++ |+||+|+|++|||||++++|++|+||||
T Consensus 376 s~tG~AtnII~Gla~Gm~St~~pvl~I~~~i~~sy~~~--------------GlyGiaiAa~GMLst~g~~la~DayGPI 441 (697)
T TIGR01104 376 CRTGAATNVIFGLALGYKSVIIPIFAIAASIIVSFSFA--------------GMYGIAMAALGMLSTAGTGLAIDAYGPI 441 (697)
T ss_pred hCcCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhheeeeecccCc
Confidence 99999999999999999999999999999999999997 8999999999999999999999999999
Q ss_pred ccCCccccccCCCChhHHhhhhhccccCCcccccchhhhHHHHHHHHHHHHHHHHHHhhhhcCCCCcccccCCchHHHHH
Q 003697 540 ADNAGGIVEMSQQPESVREITDVLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVATFAQEPFKQVDIAIPEVFVGG 619 (802)
Q Consensus 540 aDNAgGIaEMs~l~~~VR~~tD~LDavGNTT~Ai~KGfAIGSAaLaal~LF~ay~~~~~~~~~~~~~~~~l~~P~Vl~Gl 619 (802)
+||||||+|||+|||||||+||+||++||||||+|||||||||+|+||+||++|+++++ +..+|+.||+|++|+
T Consensus 442 aDNAgGIaEMs~l~~~VR~~TD~LDavGNTT~Ai~KGfAIGSAaL~alaLF~ay~~~~~------~~~~~l~~p~vl~Gl 515 (697)
T TIGR01104 442 SDNAGGIAEMAGLPHRVRERTDALDAVGNTTAAIGKGFAIGSAALVALALFGAFVSRAV------ITTVDVLTPKVFIGL 515 (697)
T ss_pred ccCcccHHHHhcCCHHHHHhhhhccccCCcchhhccceehhhHHHHHHHHHHHHHHHhc------cCeeecCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999874 346999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccCcCccccccCCChhhHHHHhhHHHHHhhhhhhhHHHHhhHhhHHh
Q 003697 620 LLGSMLIFLFSGWACSAVGKTAQEVVNEVRRQFIERPGIMEYKEKPDYARCVAIVASASLREMIKPGALAIISPLVIGLL 699 (802)
Q Consensus 620 liG~mlpflFSa~~m~aVg~aA~~mV~EVRRQFre~pGimeg~~kPDY~~cV~I~T~~AlkeMi~Pgllavl~Pi~vG~~ 699 (802)
|+|+|+|||||+++|+||||+|++|||||||||||+||||||++||||+||||||||+||||||+|+++++++|+++|++
T Consensus 516 liG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGi~eG~~kPdY~~cV~I~T~aAlkeMi~Pgll~i~~Pi~vG~~ 595 (697)
T TIGR01104 516 FVGAMLPYWFSSMTMKSVGRAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGLLVMLTPLIVGFL 595 (697)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhhc-----CCCCCCCccccccccccccCCC
Q 003697 700 FRILGYYTGHALLGAKVVAALLMFATVSGILMALFLNTAGGAWDNAKKFIETG-----ALGGKGSDTHKAAVTGDTVGDP 774 (802)
Q Consensus 700 f~~~~~~~~~~llG~~al~G~L~G~~vsG~~~Ai~m~NaGGAWDNAKKyIE~g-----~~gGKgS~aHkAaVvGDTVGDP 774 (802)
||+++++|+|+|++++|++||+||+|+||||||||||||+| +|||||||+|||||||||||||
T Consensus 596 ------------~G~~al~GlL~G~~vsG~~lAi~m~NaGGAWDNAKKyIE~G~~~~~~~ggKGS~aHkAaVvGDTVGDP 663 (697)
T TIGR01104 596 ------------FGVETLSGVLAGVLVSGVQIAISASNTGGAWDNAKKYIEAGSEHARSLGPKGSEAHKAAVIGDTVGDP 663 (697)
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHHHHHhcCcchHHhHHHHHhcCccccccCCCCCcHHhhccccCCCCCCC
Confidence 49999999999999999999999999999999999999999 5699999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhccc
Q 003697 775 FKDTAGPSLHVLIKMLATITLVMAPIF 801 (802)
Q Consensus 775 fKDTaGPSlniLIKlms~vslv~ap~~ 801 (802)
||||||||||||||+|++|||||+|+|
T Consensus 664 fKDTaGPslNilIKlm~~vslv~ap~~ 690 (697)
T TIGR01104 664 LKDTSGPSLNILIKLMAVESLVFAPFF 690 (697)
T ss_pred ccccccchHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987
No 3
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=100.00 E-value=1.7e-248 Score=2081.85 Aligned_cols=689 Identities=41% Similarity=0.657 Sum_probs=629.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC--------------------------C------cHHHHHHHHHHHHHHHHHHHH
Q 003697 69 VFVFSVCIITFILSIYLCKWVLSKDE--------------------------G------PPEMAQISDAIRDGAEGFFRT 116 (802)
Q Consensus 69 ~~~~~~~~~~l~~a~~~~~~v~~~~~--------------------------G------~~~m~~Is~~I~eGA~afL~~ 116 (802)
++++++++++++||+++++||+|+|+ | ++|||||+++|||||++||+|
T Consensus 11 ~~~~~~~~~~l~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~eG~~~~~~~~~m~~Ia~~I~eGA~afL~r 90 (765)
T PLN02255 11 VLIPVAALIGIAFALLQWYLVSRVKVSPDSGASSNGGGGGGGYGDYLIEEEEGLNDHNVVAKCAEIQNAISEGATSFLFT 90 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccccccccccccccccccccccCccccccCHHHHHHHHHHHHhHHHHHHH
Confidence 45678999999999999999999999 8 899999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhcc------CCCccccc--ccCCCcchhhHHHHHHHHHHHHHHhhhHHhhhhhhhhhhh
Q 003697 117 QYGTISKMACLLALVIFCIYLFRN------TTPQQEAS--GIGRSNSACITVAAFLLGALCSGIAGYVGMWVSVRANVRV 188 (802)
Q Consensus 117 qy~~i~~~~i~~~~~i~~~~~~~~------~~~~~~~~--~~~~~~~~~~~a~~Fl~Ga~~S~laGyiGM~vat~aN~Rt 188 (802)
|||+|+++++++++++++.+.... +++.+... +..+....++++++|++|++||.++||+|||+|||+|+||
T Consensus 91 qyk~i~~~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fl~Ga~~S~~aG~iGM~vat~ANvRt 170 (765)
T PLN02255 91 EYKYVGIFMVIFAAVIFVFLGSVEGFSTKSQPCTYDKGKLCKPALANAAFSTVAFLLGALTSVVSGFLGMKIATYANART 170 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998864332110 01111111 2222222367999999999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhhhhhhhHHHHHHHHHHhhc
Q 003697 189 SSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGG 268 (802)
Q Consensus 189 a~aA~~~~~~al~vafrgG~vmGl~vvgl~llgl~~l~~~~~~~~~~~~~~~~~~~~~~~~i~gfg~GaS~iALFaRvGG 268 (802)
|+|||+++++||++|||+|+||||+|+||+|+|++++|++|..++.. +....+++++||+||||++|||+|+||
T Consensus 171 A~AA~~gl~~al~vAfr~GaVmGl~vvgl~Llgl~~~~~~~~~~~~~------~~~~~~~~l~Gfg~GaS~iAlFaRvGG 244 (765)
T PLN02255 171 TLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKLYYGD------DWEGLYEAITGYGLGGSSMALFGRVGG 244 (765)
T ss_pred HHHHHhchHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHhhccc------hhhhhhhHHhhhcccHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999998755421 122356799999999999999999999
Q ss_pred chhhhhhhhccccchhhhcCCCCCCCCCcchhccccCCCcccccccccchHHHHHHHHHHHHHHHH-hhhhhcccCCCcc
Q 003697 269 GIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGG-TMVQRCKLENPSG 347 (802)
Q Consensus 269 GIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~siiaamilg~-~~~~~~~~~~~~~ 347 (802)
||||||||||||||||||+|||||||||||||||||||||||||||||||||||+++++++|+|+. ..+ +.+..+.
T Consensus 245 GIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~s~vaamilg~~~~~---~~~~~~~ 321 (765)
T PLN02255 245 GIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSF---GINHDFT 321 (765)
T ss_pred ceeeeccccchhhhhhhhcCCCCCCCCCcchHHHhhcccccccccccchhHHHHHHHHHHHHHHHHHHhc---ccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999995 222 1221223
Q ss_pred chHHHHHHHHHHHHHHHHHhhheeccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------C--CCc
Q 003697 348 FILFPLVVHSFDLVISSIGILSIRSSRDSSVKAPIEDPMAILQKGYSVTVVLAVLTFGASTRWLLYTE------Q--APS 419 (802)
Q Consensus 348 ~~~~Pl~v~a~gii~Siig~~~v~~~~~~~~~~~~~~~~~aL~~g~~vs~~l~~v~~~~~~~~~l~~~------~--~~~ 419 (802)
.+.|||+++++|+++|++|++++|...+. .+++||+++||+|+|+|+++++++++++++|++|.+ + ...
T Consensus 322 ~v~~PLli~~~gii~siig~~~v~~~~~~---~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~g~~~~~ 398 (765)
T PLN02255 322 AMCYPLLISSVGIIVCLITTLFATDFFEI---KAVKEIEPALKKQLIISTVLMTVGIAVVSWLALPSSFTIFNFGTQKVV 398 (765)
T ss_pred hhhHHHHHHHHHHHHHHHHHHheeccccc---CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccccccccc
Confidence 58999999999999999999999731110 014589999999999999999999999999987542 1 123
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHhhcCCCchhHHHHHHhhhhccchhHHHHHHHHHHHHHHhhcc
Q 003697 420 AWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRALALSSSTGHGTNIIAGVSLGLESTAPPVLVISVSIVSAYWLGQT 499 (802)
Q Consensus 420 ~~~~~f~~~~iGl~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~~~ 499 (802)
.||++|+|+++|+++|++|+++||||||++||||||||++|+||||||||+||++||+||+||+++|++++++||+++
T Consensus 399 ~~~~~f~~~~iGl~~g~lI~~iTeYyTs~~y~PV~~IA~aS~tG~ATnII~GlavGm~St~~Pvl~I~~ai~~sy~l~-- 476 (765)
T PLN02255 399 KNWQLFFCVAIGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIYVSFSLA-- 476 (765)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 567899999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHhhhhhHhhhhccccccccCCccccccCCCChhHHhhhhhccccCCcccccchhhhH
Q 003697 500 SGLVDESGNPIGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDVLDAVGNTTKATTKGFAI 579 (802)
Q Consensus 500 ~~~~~~~~~~~~GlyGiAlAa~GMLst~g~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDavGNTT~Ai~KGfAI 579 (802)
|+||+|+|++|||||++++|++|+||||+||||||+|||+|||||||+||+||++||||||+||||||
T Consensus 477 ------------glyGiaiAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~~~VR~~TD~LDAvGNTTkAi~KGfAI 544 (765)
T PLN02255 477 ------------AMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAI 544 (765)
T ss_pred ------------HHHHHHHHHHHHHHHhHHhheeecccCcccCccCHHHHhcCCHHHHHHhhhhcccCCchhhhcccchh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccCcCcc
Q 003697 580 GSAALASFLLFSAYMDEVATFAQEPFKQVDIAIPEVFVGGLLGSMLIFLFSGWACSAVGKTAQEVVNEVRRQFIERPGIM 659 (802)
Q Consensus 580 GSAaLaal~LF~ay~~~~~~~~~~~~~~~~l~~P~Vl~GlliG~mlpflFSa~~m~aVg~aA~~mV~EVRRQFre~pGim 659 (802)
|||+|+||+||++|+++.+ +..+|+.||+|++|+|+|+|+|||||+++|+||||+|++||||||||||||||||
T Consensus 545 GSAaLaalaLF~ay~~~~~------~~~~~l~~P~Vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGim 618 (765)
T PLN02255 545 GSAALVSLALFGAFVSRAG------ISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLM 618 (765)
T ss_pred hHHHHHHHHHHHHHHHhcC------CCeeecCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchh
Confidence 9999999999999999843 3469999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCChhhHHHHhhHHHHHhhhhhhhHHHHhhHhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 003697 660 EYKEKPDYARCVAIVASASLREMIKPGALAIISPLVIGLLFRILGYYTGHALLGAKVVAALLMFATVSGILMALFLNTAG 739 (802)
Q Consensus 660 eg~~kPDY~~cV~I~T~~AlkeMi~Pgllavl~Pi~vG~~f~~~~~~~~~~llG~~al~G~L~G~~vsG~~~Ai~m~NaG 739 (802)
|||+||||+||||||||+||||||+|+++++++|+++|++ ||+++++|+|+|++++|++||+||+|+|
T Consensus 619 eG~~kPDY~~cV~I~T~aAlkeMi~Pgll~v~~Pi~vg~~------------~G~~al~GlL~G~~vsGv~lAi~maNaG 686 (765)
T PLN02255 619 EGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGTL------------FGVETLSGVLAGALVSGVQIAISASNTG 686 (765)
T ss_pred cCCCCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------------ccHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999987 4999999999999999999999999999
Q ss_pred chhhhhhhhhhhc------CCCCCCCccccccccccccCCCCCCCCCchhHHHHHHHHHHHHHHhccc
Q 003697 740 GAWDNAKKFIETG------ALGGKGSDTHKAAVTGDTVGDPFKDTAGPSLHVLIKMLATITLVMAPIF 801 (802)
Q Consensus 740 GAWDNAKKyIE~g------~~gGKgS~aHkAaVvGDTVGDPfKDTaGPSlniLIKlms~vslv~ap~~ 801 (802)
|||||||||||+| ++||||||+|||||||||||||||||||||||||||+|++|||||+|+|
T Consensus 687 GAWDNAKKyIE~G~~~~~~~~ggKGS~aHkAaVvGDTVGDPfKDTaGPslNiLIKlm~~vslv~ap~~ 754 (765)
T PLN02255 687 GAWDNAKKYIEAGASEHARSLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFF 754 (765)
T ss_pred chHHhHHHHHHcCccccccccCCCCcHHhhccccCCCCCCcccccccchHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999 4599999999999999999999999999999999999999999999987
No 4
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=100.00 E-value=1.1e-248 Score=2087.78 Aligned_cols=679 Identities=54% Similarity=0.895 Sum_probs=609.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCcccccccCCCc
Q 003697 75 CIITFILSIYLCKWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQEASGIGRSN 154 (802)
Q Consensus 75 ~~~~l~~a~~~~~~v~~~~~G~~~m~~Is~~I~eGA~afL~~qy~~i~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 154 (802)
|+++++||+++++||+|+|+|+|+||||+++|||||++||+||||++++|+++++++|++++.... .
T Consensus 1 ~~~~l~~a~~~~~~v~~~~~G~~~m~~Ia~~I~eGA~aFL~reYk~i~~~~vi~~~ll~~~~~~~~-------------~ 67 (682)
T PF03030_consen 1 AVLGLIFALFLARWVLKQDEGNEKMQEIAAAIQEGAMAFLKREYKTIAIFIVIVAILLFFLLGFLG-------------G 67 (682)
T ss_dssp -HHHHHHHHHHHHHHHTS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------T
T ss_pred ChHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------------c
Confidence 689999999999999999999999999999999999999999999999999999999987653221 1
Q ss_pred chhhHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhHHHH-hhcHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 003697 155 SACITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAA-RRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYATFYVWL 233 (802)
Q Consensus 155 ~~~~~a~~Fl~Ga~~S~laGyiGM~vat~aN~Rta~aA-~~~~~~al~vafrgG~vmGl~vvgl~llgl~~l~~~~~~~~ 233 (802)
.+|++++||++|++||.+|||+||++|||+|+||+++| ++++++||++|||+|+||||+|+||+|+|++++|+++..++
T Consensus 68 ~~~~taiaFliGa~~S~laGyiGM~vAt~aN~Rta~AAr~~gl~~AL~vAfrgGaVmGl~vvglgLlgl~~l~~i~~~~~ 147 (682)
T PF03030_consen 68 QGWWTAIAFLIGALCSALAGYIGMRVATRANVRTANAARTRGLNKALQVAFRGGAVMGLSVVGLGLLGLSILFLIFSAFF 147 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHhcCChHhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999999999999 59999999999999999999999999999999999998765
Q ss_pred cCCCCCCCccccchhhhhhhhhHHHHHHHHHHhhcchhhhhhhhccccchhhhcCCCCCCCCCcchhccccCCCcccccc
Q 003697 234 GVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAA 313 (802)
Q Consensus 234 ~~~~~~~~~~~~~~~~i~gfg~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AG 313 (802)
.. .+.++.+++++||+||+|++|||+|+||||||||||||||||||||+||||||||||||||||||||||||||
T Consensus 148 ~~-----~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AG 222 (682)
T PF03030_consen 148 GK-----TNPENAPEALSGFGFGASSIALFARVGGGIYTKAADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDVAG 222 (682)
T ss_dssp T------T-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---TT-TT-TTHHHHHHHHHHTTTHH
T ss_pred Cc-----cchhHHHHHHHhhcchHHHHHHHHHHcCceehhHHHHhhHHHHHHhhCCCCCCcccchHHHHHHHhhhhhhhc
Confidence 32 1346678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhheeccCCCCCCCCCCChHHHHHHHH
Q 003697 314 RGADLFESIAAEIISAMILGGTMVQRCKLENPSGFILFPLVVHSFDLVISSIGILSIRSSRDSSVKAPIEDPMAILQKGY 393 (802)
Q Consensus 314 mgADLFESy~~siiaamilg~~~~~~~~~~~~~~~~~~Pl~v~a~gii~Siig~~~v~~~~~~~~~~~~~~~~~aL~~g~ 393 (802)
|||||||||+++++++|+|+..++.... .+...++|||+++++||++|++|+|++|.+++. +.+||+++||+|+
T Consensus 223 mgADLFESy~~sivaamilg~~~~~~~~--~~~~~v~~Pl~i~~~gii~Siig~~~v~~~~~~----~~~~~~~aL~~g~ 296 (682)
T PF03030_consen 223 MGADLFESYVVSIVAAMILGSTLFGTNG--FNFSGVLFPLLIAAVGIIASIIGIFFVRTKKGA----TSKDPMKALRRGY 296 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHT--T-HHHHTHHHHHHHHHHHHHHHHHHHHHTT-------SGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcccc--cchhHHHHHHHHHHHHHHHHHHheeEEEecCCc----cccCHHHHHHHHH
Confidence 9999999999999999999998765432 122378999999999999999999999998742 3569999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccC--CCCcchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHhhcCCCchhHHHHH
Q 003697 394 SVTVVLAVLTFGASTRWLLYTE--QAPSAWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRALALSSSTGHGTNIIAG 471 (802)
Q Consensus 394 ~vs~~l~~v~~~~~~~~~l~~~--~~~~~~~~~f~~~~iGl~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnII~G 471 (802)
|+|++++++++|++++|++... ..+..||++|+|+++|+++|++|+++|||||||+||||||||++|+||||||||+|
T Consensus 297 ~vs~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iGl~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnII~G 376 (682)
T PF03030_consen 297 IVSSILSIILFFFLTYWLLGFSFFGSGISWWGLFGCVLIGLVAGVLIGFITEYYTSYSYRPVREIAEASETGPATNIISG 376 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHSEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSHHHHHHHHHGGG-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHhCcChHHHHHHH
Confidence 9999999999999999998222 23467999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHhhhhhHhhhhccccccccCCccccccCC
Q 003697 472 VSLGLESTAPPVLVISVSIVSAYWLGQTSGLVDESGNPIGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQ 551 (802)
Q Consensus 472 la~Gm~St~~Pvl~I~~ai~~sy~l~~~~~~~~~~~~~~~GlyGiAlAa~GMLst~g~~la~DayGPIaDNAgGIaEMs~ 551 (802)
+++||+||++|+++|++++++||+++.+++. |+||+|+|++|||||++++|++|+||||+||||||+||++
T Consensus 377 la~G~~St~~pvl~i~~~i~~sy~l~~~~~~---------GlyGiaiAa~GMLst~g~~la~DayGPiaDNAgGIaEMs~ 447 (682)
T PF03030_consen 377 LAVGMESTAIPVLVIAAAILISYYLGGGSGP---------GLYGIAIAAVGMLSTAGIVLAMDAYGPIADNAGGIAEMSG 447 (682)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------hHHHHHHHHHHHHHHhHHHHHhhccCcccccccchHHHcC
Confidence 9999999999999999999999999855443 8999999999999999999999999999999999999999
Q ss_pred CChhHHhhhhhccccCCcccccchhhhHHHHHHHHHHHHHHHHHHhhhhcCCCCcccccCCchHHHHHHHHHHHHHHHHH
Q 003697 552 QPESVREITDVLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVATFAQEPFKQVDIAIPEVFVGGLLGSMLIFLFSG 631 (802)
Q Consensus 552 l~~~VR~~tD~LDavGNTT~Ai~KGfAIGSAaLaal~LF~ay~~~~~~~~~~~~~~~~l~~P~Vl~GlliG~mlpflFSa 631 (802)
||||||||||+|||+||||||+|||||||||+|+||+||++|++++......+...+|+.||+|++|+|+|+|+|||||+
T Consensus 448 l~~~VR~~td~LDa~GNTT~A~~KGfaIgSAaLaal~Lf~a~~~~~~~~~~~~~~~~~l~~p~vl~G~liG~~lpflfsa 527 (682)
T PF03030_consen 448 LPEEVREITDALDAVGNTTKAIGKGFAIGSAALAALALFAAYVQEVSLFNGTSIQSVDLTNPYVLIGLLIGAMLPFLFSA 527 (682)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------T-S--BTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhhhHHHhhcCchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCcccHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999985443444567999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHhcccCcCccccccCCChhhHHHHhhHHHHHhhhhhhhHHHHhhHhhHHhhhhhhccccccc
Q 003697 632 WACSAVGKTAQEVVNEVRRQFIERPGIMEYKEKPDYARCVAIVASASLREMIKPGALAIISPLVIGLLFRILGYYTGHAL 711 (802)
Q Consensus 632 ~~m~aVg~aA~~mV~EVRRQFre~pGimeg~~kPDY~~cV~I~T~~AlkeMi~Pgllavl~Pi~vG~~f~~~~~~~~~~l 711 (802)
++|+||||+|++|||||||||||+|||||||+||||+|||||+||+|||||+.|++++|++|+++|++
T Consensus 528 ~~m~aVg~aA~~mV~EvRrQFre~pgi~eg~~~pdy~~cV~I~T~~alkemi~P~ll~v~~Pi~vg~~------------ 595 (682)
T PF03030_consen 528 LTMKAVGRAAGKMVEEVRRQFREIPGIMEGKAKPDYARCVDISTRAALKEMILPGLLAVLAPIVVGFL------------ 595 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTTTTSS---HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhhcCCCCCCCccccccccccccCCCCCCCCCchhHHHHHHHH
Q 003697 712 LGAKVVAALLMFATVSGILMALFLNTAGGAWDNAKKFIETGALGGKGSDTHKAAVTGDTVGDPFKDTAGPSLHVLIKMLA 791 (802)
Q Consensus 712 lG~~al~G~L~G~~vsG~~~Ai~m~NaGGAWDNAKKyIE~g~~gGKgS~aHkAaVvGDTVGDPfKDTaGPSlniLIKlms 791 (802)
||+++++|+|+|++++|++||+||+|+||||||||||||+|+|||||||+|||||||||||||||||||||||||||+|+
T Consensus 596 ~g~~al~G~L~g~~~sG~~~Ai~m~n~GGAWDNAKKyIE~g~~ggKgS~aHkAaVvGDTVGDP~KDTaGPslnilIKl~~ 675 (682)
T PF03030_consen 596 LGPEALGGLLMGATVSGILLAIFMANAGGAWDNAKKYIEQGNLGGKGSEAHKAAVVGDTVGDPFKDTAGPSLNILIKLMS 675 (682)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SHHTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhccCcCCCCChhhCCcccCCCCCCCccccCcchHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 003697 792 TITLVMA 798 (802)
Q Consensus 792 ~vslv~a 798 (802)
++||||+
T Consensus 676 ~vslv~a 682 (682)
T PF03030_consen 676 IVSLVFA 682 (682)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999986
No 5
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=100.00 E-value=2.1e-245 Score=2045.09 Aligned_cols=659 Identities=52% Similarity=0.834 Sum_probs=618.7
Q ss_pred HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCcccccccCCCcchhhHHHHHHHHHH
Q 003697 89 VLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQEASGIGRSNSACITVAAFLLGAL 168 (802)
Q Consensus 89 v~~~~~G~~~m~~Is~~I~eGA~afL~~qy~~i~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~ 168 (802)
|+|||+|+||||||+++|||||++||+||||++++|.++++++++.... ....+|++++||++|++
T Consensus 1 v~~~~~G~~~m~~Ia~~I~eGA~afl~rqyk~i~~~~i~~~~~l~~~~~--------------~~~~~~~~~~~Fl~Ga~ 66 (666)
T PRK00733 1 VLKQPAGTERMQEIAGAIQEGAMAYLKRQYKTIAIFGVVVAVLLFLPAG--------------GLFLGWLTAVAFLVGAV 66 (666)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------hHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999998854300 11246899999999999
Q ss_pred HHHHhhhHHhhhhhhhhhhhHHHHhhcHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchh
Q 003697 169 CSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYATFYVWLGVDTPGSMKVTDLPL 248 (802)
Q Consensus 169 ~S~laGyiGM~vat~aN~Rta~aA~~~~~~al~vafrgG~vmGl~vvgl~llgl~~l~~~~~~~~~~~~~~~~~~~~~~~ 248 (802)
||.++||+|||+|||+|+|||++||++++++|++|||+|+||||+|+||+|+|++++|+++..++ +..+.++
T Consensus 67 ~S~laG~iGM~iat~aN~Rta~aA~~~~~~al~vafr~G~vmGl~vvgl~Llgl~~~~~~~~~~~--------~~~~~~~ 138 (666)
T PRK00733 67 FSALAGYIGMRVATRANVRTAQAARKGLGKALKVAFRGGAVMGLLVVGLGLLGVAGLYLVFGLGA--------NPDDAPD 138 (666)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccc--------cchhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999876332 2244678
Q ss_pred hhhhhhhHHHHHHHHHHhhcchhhhhhhhccccchhhhcCCCCCCCCCcchhccccCCCcccccccccchHHHHHHHHHH
Q 003697 249 LLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIIS 328 (802)
Q Consensus 249 ~i~gfg~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~siia 328 (802)
+++||+||+|++|||+|+||||||||||||||||||||+|||||||||||||||||||||||||||||||||||++++++
T Consensus 139 ~l~gf~~GaS~iAlFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADlfESy~~siva 218 (666)
T PRK00733 139 ALVGFGFGASLIALFARVGGGIFTKAADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMGADLFESYAVTIVA 218 (666)
T ss_pred HHHHhhhhHHHHHHHHHhcccceecccccchhhhhhhhcCCCCCCCCCcchHHHhhcccchhhccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhheeccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 003697 329 AMILGGTMVQRCKLENPSGFILFPLVVHSFDLVISSIGILSIRSSRDSSVKAPIEDPMAILQKGYSVTVVLAVLTFGAST 408 (802)
Q Consensus 329 amilg~~~~~~~~~~~~~~~~~~Pl~v~a~gii~Siig~~~v~~~~~~~~~~~~~~~~~aL~~g~~vs~~l~~v~~~~~~ 408 (802)
+|+|+..... .....+.++|||+++++|+++|++|++++|.++ ++||+++||+|+|+|++++++++|+++
T Consensus 219 amilg~~~~~---~~~~~~~v~~Pl~i~~~gii~Siig~~~v~~~~-------~~~~~~aL~~g~~~s~~l~~v~~~~~~ 288 (666)
T PRK00733 219 AMVLGAAAAD---AAFGVAGVLFPLLIAAVGIIASIIGIFFVRLGK-------GGNPMKALNRGLIVTAVLSIVLTYFAT 288 (666)
T ss_pred HHHHhhhccc---cccchhHHHHHHHHHHHHHHHHHHHHeeEEeCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999973211 122346799999999999999999999999876 578999999999999999999999999
Q ss_pred HHhhccCCCCcchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHhhcCCCchhHHHHHHhhhhccchhHHHHHHH
Q 003697 409 RWLLYTEQAPSAWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRALALSSSTGHGTNIIAGVSLGLESTAPPVLVISV 488 (802)
Q Consensus 409 ~~~l~~~~~~~~~~~~f~~~~iGl~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnII~Gla~Gm~St~~Pvl~I~~ 488 (802)
+|++++......||++|+|+++|+++|++|+++||||||++||||||||++|+||||||||+|+++||+||++|+++|++
T Consensus 289 ~~~l~~~~~~~~~~~~f~~~~iGlv~g~li~~iTeYyTs~~~~PVr~IA~as~tG~aTnIi~Gla~Gm~St~~pvl~i~~ 368 (666)
T PRK00733 289 YWLLGDGADGFTWLNLFGAVLIGLVVGALIGLITEYYTSTEYRPVKEIAEASRTGPATNIISGLAVGMESTALPVLVIVA 368 (666)
T ss_pred HHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHhCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997543345688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHhhhhhHhhhhccccccccCCccccccCCCChhHHhhhhhccccCC
Q 003697 489 SIVSAYWLGQTSGLVDESGNPIGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDVLDAVGN 568 (802)
Q Consensus 489 ai~~sy~l~~~~~~~~~~~~~~~GlyGiAlAa~GMLst~g~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDavGN 568 (802)
++++||+++. ..+|+||+++|++|||||+++++++|+||||+||||||+||++|||||||+||+||++||
T Consensus 369 ai~~sy~l~~----------~~~GlyGia~Aa~GMLst~g~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDavGN 438 (666)
T PRK00733 369 AILGAYLLGM----------AGAGLYGIALAAVGMLSTAGIIVAVDAYGPITDNAGGIAEMAGLPPEVRKITDALDAVGN 438 (666)
T ss_pred HHHHHHHhcc----------ccccHHHHHHHHHHHHHHhHHHHhhheeeccccCccchHHHcCCChhHhhhChHhHhccc
Confidence 9999999963 234999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHhhhh-cCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 003697 569 TTKATTKGFAIGSAALASFLLFSAYMDEVATF-AQEPFKQVDIAIPEVFVGGLLGSMLIFLFSGWACSAVGKTAQEVVNE 647 (802)
Q Consensus 569 TT~Ai~KGfAIGSAaLaal~LF~ay~~~~~~~-~~~~~~~~~l~~P~Vl~GlliG~mlpflFSa~~m~aVg~aA~~mV~E 647 (802)
||||+|||||||||+|+||+||++|++++... .......+|+.||+|++|+|+|+|+|||||+++|+||||+|++||||
T Consensus 439 TT~A~~KGfaIGSAaLaal~Lf~ay~~~~~~~~~~~~~~~~~l~~p~vl~GlliG~~lpflFs~l~m~AVg~aA~~mV~E 518 (666)
T PRK00733 439 TTKAVTKGFAIGSAALAALALFAAYIDELAGLLGGGGILSLDLSNPYVLVGLLIGGMLPFLFSALAMTAVGRAAGAMVEE 518 (666)
T ss_pred chhHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998322 12235579999999999999999999999999999999999999999
Q ss_pred HHHhcccCcCccccccCCChhhHHHHhhHHHHHhhhhhhhHHHHhhHhhHHhhhhhhccccccchhHHHHHHHHHHHHHH
Q 003697 648 VRRQFIERPGIMEYKEKPDYARCVAIVASASLREMIKPGALAIISPLVIGLLFRILGYYTGHALLGAKVVAALLMFATVS 727 (802)
Q Consensus 648 VRRQFre~pGimeg~~kPDY~~cV~I~T~~AlkeMi~Pgllavl~Pi~vG~~f~~~~~~~~~~llG~~al~G~L~G~~vs 727 (802)
|||||||+||||||++||||+||||||||+||||||+|+++++++|+++|++ ||+++++|+|+|++++
T Consensus 519 VRrQFre~pGi~eg~~kPdY~~cV~I~T~~AlkeMi~P~ll~v~~Pi~vG~~------------lG~~al~G~L~G~~vs 586 (666)
T PRK00733 519 VRRQFREIPGIMEGTAKPDYARCVDISTKAALKEMILPGLLAVLAPIAVGFL------------LGPEALGGLLAGAIVT 586 (666)
T ss_pred HHHHHhcCcccccCCCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997 4999999999999999
Q ss_pred HHHHHHHhhcccchhhhhhhhhhhcCCCCCCCccccccccccccCCCCCCCCCchhHHHHHHHHHHHHHHhccc
Q 003697 728 GILMALFLNTAGGAWDNAKKFIETGALGGKGSDTHKAAVTGDTVGDPFKDTAGPSLHVLIKMLATITLVMAPIF 801 (802)
Q Consensus 728 G~~~Ai~m~NaGGAWDNAKKyIE~g~~gGKgS~aHkAaVvGDTVGDPfKDTaGPSlniLIKlms~vslv~ap~~ 801 (802)
|++||+||+|+||||||||||||+|+|||||||+|||||||||||||||||||||||||||+|+++|||++|+|
T Consensus 587 G~~lAi~m~NaGGAWDNAKKyIE~g~~gGKgS~aHkAaVvGDTVGDPfKDTaGPslnilIKl~~~vslv~ap~~ 660 (666)
T PRK00733 587 GLLLAIFMANAGGAWDNAKKYIEDGNHGGKGSEAHKAAVVGDTVGDPFKDTAGPALNPLIKLMNIVALLIAPLL 660 (666)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcCCCCCCCcHHHhccccCCCCCCCccccccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987
No 6
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=1.1e-239 Score=1926.36 Aligned_cols=678 Identities=47% Similarity=0.786 Sum_probs=636.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCccc
Q 003697 67 IIVFVFSVCIITFILSIYLCKWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQE 146 (802)
Q Consensus 67 ~~~~~~~~~~~~l~~a~~~~~~v~~~~~G~~~m~~Is~~I~eGA~afL~~qy~~i~~~~i~~~~~i~~~~~~~~~~~~~~ 146 (802)
.+++.++|++++++||.|.++||+|+|+||||||||+.+|||||++||+||||+|+++.+++++++.++.
T Consensus 5 ~~~l~i~~gl~sv~~A~~~~~sVl~~~~Gn~rm~eIa~aIreGA~ayL~rqy~tiavv~ivva~ll~~~l---------- 74 (703)
T COG3808 5 VLYLAIACGLLSVLYAAWAAKSVLRADAGNERMKEIAAAIREGAMAYLARQYKTIAVVGIVVAILLAWFL---------- 74 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHH----------
Confidence 4568899999999999999999999999999999999999999999999999999999999988876542
Q ss_pred ccccCCCcchhhHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhHHHHhhcHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 003697 147 ASGIGRSNSACITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILY 226 (802)
Q Consensus 147 ~~~~~~~~~~~~~a~~Fl~Ga~~S~laGyiGM~vat~aN~Rta~aA~~~~~~al~vafrgG~vmGl~vvgl~llgl~~l~ 226 (802)
..|.++++|++|++.|+.|||+||+++||+|+||||||++++.++|++|||+|+|||++|+||+|||+++.|
T Consensus 75 --------~~~~ta~~Fl~GAv~S~~AG~~GM~vstrAN~RtAqAAs~~l~~al~vaf~sGaV~Gl~VaGlaLlg~s~~y 146 (703)
T COG3808 75 --------LSWLTAIGFLLGAVLSAAAGFAGMHVSTRANVRTAQAASTGLGKALDVAFKSGAVMGLSVAGLALLGLSLYY 146 (703)
T ss_pred --------hhhHHHHHHHHHHHHHhhhcccceeeeehhhhHHHHHHHhhhhhhhhhhcccCcchhhHHHHHHHHHHHhhh
Confidence 237899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCccccchhhhhhhhhHHHHHHHHHHhhcchhhhhhhhccccchhhhcCCCCCCCCCcchhccccCC
Q 003697 227 ATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGD 306 (802)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~gfg~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGD 306 (802)
+++..|+.+.. +...+...++||+||||++++|+|+|||||||+||||+|||||||+||||||||||+||||||||
T Consensus 147 lv~~~~~g~~~----~~~~~i~~lv~~gfGaSlIslFaRvGGGIfTKaADvgaDLVGKVEagIPEDDPRNpatIADNVGD 222 (703)
T COG3808 147 LVLTSVLGHEP----NLRIVIDSLVGLGFGASLISLFARVGGGIFTKAADVGADLVGKVEAGIPEDDPRNPATIADNVGD 222 (703)
T ss_pred heeecccCCCc----ccchhhhhhhhhccchHHHHHHHHhcCceecchhhcccccccccccCCCCCCCCCccccccccCc
Confidence 99988775432 22445678999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccchHHHHHHHHHHHHHHHHhhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhheeccCCCCCCCCCCChH
Q 003697 307 NVGDCAARGADLFESIAAEIISAMILGGTMVQRCKLENPSGFILFPLVVHSFDLVISSIGILSIRSSRDSSVKAPIEDPM 386 (802)
Q Consensus 307 NVGD~AGmgADLFESy~~siiaamilg~~~~~~~~~~~~~~~~~~Pl~v~a~gii~Siig~~~v~~~~~~~~~~~~~~~~ 386 (802)
||||||||+|||||||+++++++|+|++.++... +.-...++|||.+++++|++||+|+||||.++ +++||
T Consensus 223 NVGD~AGM~ADLfEsYvvtvvAtm~Laai~f~~~--~~~~~~ilyPl~i~a~~i~~Si~gtffVk~~~-------~~~i~ 293 (703)
T COG3808 223 NVGDCAGMAADLFESYVVTVVATMVLAAIFFLGT--ETIEAVILYPLAICAVGIITSIIGTFFVKLGK-------SGSIM 293 (703)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHHHHHHhheEEEeCC-------CCCHH
Confidence 9999999999999999999999999999886421 11234688999999999999999999999986 67899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC-----CCCcchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHhhcC
Q 003697 387 AILQKGYSVTVVLAVLTFGASTRWLLYTE-----QAPSAWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRALALSSS 461 (802)
Q Consensus 387 ~aL~~g~~vs~~l~~v~~~~~~~~~l~~~-----~~~~~~~~~f~~~~iGl~~g~lI~~~TeYyTs~~~~PVr~IA~as~ 461 (802)
.+|++|+|.+.++++++++++++.+++.+ +.....+++|.|.++|++++.+|+++||||||++|||||+||++|.
T Consensus 294 ~al~~gl~~t~~Lsvv~~~~~t~~l~g~~~~~v~g~~~~~~~lf~~~~~Glv~~~lIv~iTeyYT~t~~rPv~~ia~as~ 373 (703)
T COG3808 294 GALYKGLIATGILSVVALAFVTSFLLGGTIGTVAGMSIGAINLFFCGVIGLVVTALIVVITEYYTSTNYRPVNSIAQASV 373 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHheeeeeeeccCCcchHHHHHHhhc
Confidence 99999999999999999999999988522 1223446799999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHhhhhccchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHhhhhhHhhhhcccccccc
Q 003697 462 TGHGTNIIAGVSLGLESTAPPVLVISVSIVSAYWLGQTSGLVDESGNPIGGLFGTAVATMGMLSTAAYVLTMDMFGPIAD 541 (802)
Q Consensus 462 tG~AtnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~~~~~~~~~~~~~~~GlyGiAlAa~GMLst~g~~la~DayGPIaD 541 (802)
|||+||||+|+++|||||++|+++|.++|+.+|+++ ||||+|+|++|||++++++++.|+|||++|
T Consensus 374 tG~~tnii~GlavgleSt~~P~iviv~gIi~~~~~~--------------GLyG~AIAa~~ML~~agmiva~DayGPVtD 439 (703)
T COG3808 374 TGHGTNIIQGLAVGLESTALPAIVIVIGIIITYQLA--------------GLYGTAIAAVGMLSTAGMIVALDAYGPVTD 439 (703)
T ss_pred cCcchhhhhhhhhhhhhccccHHHHHHHHHHHHHHh--------------HHHHHHHHHHHHHHHhheEEEeeccCCccc
Confidence 999999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred CCccccccCCCChhHHhhhhhccccCCcccccchhhhHHHHHHHHHHHHHHHHHHhhhhc--CCC--------CcccccC
Q 003697 542 NAGGIVEMSQQPESVREITDVLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVATFA--QEP--------FKQVDIA 611 (802)
Q Consensus 542 NAgGIaEMs~l~~~VR~~tD~LDavGNTT~Ai~KGfAIGSAaLaal~LF~ay~~~~~~~~--~~~--------~~~~~l~ 611 (802)
|||||+||++|||||||+||+|||+||||||+|||||||||+|+||+||++|..++..++ +.+ ...+|++
T Consensus 440 NAGGIaEMa~LppEVR~~TD~LDAVGNTTkAvtKGyAIGSA~l~AL~LFAaY~~~~~~~a~~g~~~~~~~~~~~~~~dl~ 519 (703)
T COG3808 440 NAGGIAEMAGLPPEVRKITDALDAVGNTTKAVTKGYAIGSAALGALVLFAAYSFDLKYFAANGKPYPYFADMGALSLDLS 519 (703)
T ss_pred CccchHHHcCCCHHHHHhhHHHHhccchhhhhhcccchhHHHHHHHHHHHHHHHHhhhHHhcCCCCcccccccceeeecC
Confidence 999999999999999999999999999999999999999999999999999999987543 111 2359999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccCcCccccccCCChhhHHHHhhHHHHHhhhhhhhHHHH
Q 003697 612 IPEVFVGGLLGSMLIFLFSGWACSAVGKTAQEVVNEVRRQFIERPGIMEYKEKPDYARCVAIVASASLREMIKPGALAII 691 (802)
Q Consensus 612 ~P~Vl~GlliG~mlpflFSa~~m~aVg~aA~~mV~EVRRQFre~pGimeg~~kPDY~~cV~I~T~~AlkeMi~Pgllavl 691 (802)
||+|++|+++|+++||+||+++|.||||+|++|||||||||||+|||||||+||||+|||||+||+|||||+.|++++|+
T Consensus 520 np~VvaGl~~G~~lpylFs~~tmtAVgrAA~~vV~EVRRQfRE~PGimegk~kPdY~R~Vdi~T~aAl~eMi~P~llavl 599 (703)
T COG3808 520 NPYVVAGLLLGGLLPYLFSGITMTAVGRAAMEVVEEVRRQFREIPGIMEGKAKPDYGRCVDILTKAALKEMIIPGLLAVL 599 (703)
T ss_pred ChHHHHHHHHhhHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhCCccccCCcCCchhHHHHHHHHHHHHHhcchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhhc--CCCCCCCcccccccccc
Q 003697 692 SPLVIGLLFRILGYYTGHALLGAKVVAALLMFATVSGILMALFLNTAGGAWDNAKKFIETG--ALGGKGSDTHKAAVTGD 769 (802)
Q Consensus 692 ~Pi~vG~~f~~~~~~~~~~llG~~al~G~L~G~~vsG~~~Ai~m~NaGGAWDNAKKyIE~g--~~gGKgS~aHkAaVvGD 769 (802)
+|+++|++ +|+++|+|+|+|.+++|+++||+|+|+||||||||||||+| .+++||||+|||+|+||
T Consensus 600 ~Plvvgli------------~G~~aLgg~L~G~iv~G~~~Ai~m~n~GGAWDNAKK~iE~G~~~~~~KGse~HKAaV~GD 667 (703)
T COG3808 600 APLVVGLI------------LGFAALGGLLLGVIVNGLFVAISMANGGGAWDNAKKYIEDGNGVGHKKGSEAHKAAVTGD 667 (703)
T ss_pred HHHHHHHH------------hhHHHHHHHHHHHHHHhHHHHHhhccCCCcchhhhhhhhcCCCcCCCcccccccccccCC
Confidence 99999986 59999999999999999999999999999999999999996 45679999999999999
Q ss_pred ccCCCCCCCCCchhHHHHHHHHHHHHHHhccc
Q 003697 770 TVGDPFKDTAGPSLHVLIKMLATITLVMAPIF 801 (802)
Q Consensus 770 TVGDPfKDTaGPSlniLIKlms~vslv~ap~~ 801 (802)
|||||||||+|||+|||||+||++|+++.|+|
T Consensus 668 TVGDP~KDTaGPalN~lIKi~niVall~~~v~ 699 (703)
T COG3808 668 TVGDPYKDTAGPALNPLIKIMNIVALLLLAVF 699 (703)
T ss_pred CCCCcccccCCccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986
No 7
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=81.74 E-value=18 Score=42.83 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=39.6
Q ss_pred cchhhhhhhhccccchhhhcCCCCCCCC-CcchhccccCCCcccccccccchHHHHHHHHHHHHHHHHhhhhhcccCCCc
Q 003697 268 GGIYTKAADVGADLVGKVEQGIPEDDPR-NPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMVQRCKLENPS 346 (802)
Q Consensus 268 GGIyTKAADVGADLVGKVEagIPEDDPR-NPavIADnVGDNVGD~AGmgADLFESy~~siiaamilg~~~~~~~~~~~~~ 346 (802)
|++=++..-+..||- |||||| +++==-=..|||+| ++++..+.+... ..-+
T Consensus 132 Gl~K~NiS~llg~ly-------~~~DprrD~gFt~fY~~iNiG---------------sl~~p~i~~~~~-~~~g----- 183 (498)
T COG3104 132 GLFKPNISSLLGELY-------PKDDPRRDGGFTLFYMGINIG---------------SLIAPIITGLLA-INYG----- 183 (498)
T ss_pred ccccccHHHHHHHhc-------CCCCcccCCCccEEEEEeehH---------------HHHHHHHHHHHH-HhhC-----
Confidence 445567777777776 999999 23211122344433 344444443321 1111
Q ss_pred cchHHHHHHHHHHHHHHHHHhhheec
Q 003697 347 GFILFPLVVHSFDLVISSIGILSIRS 372 (802)
Q Consensus 347 ~~~~~Pl~v~a~gii~Siig~~~v~~ 372 (802)
-..-+-++++|++.+++--+.-|.
T Consensus 184 --~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 184 --WHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHccc
Confidence 123355677888777765555443
No 8
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=52.36 E-value=5.6e+02 Score=31.92 Aligned_cols=143 Identities=22% Similarity=0.313 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhHHHHhhc---------------HHHHHHHhhhccchhHHHHHHHHHHH
Q 003697 157 CITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRS---------------AREALQIAVRAGGFSAIVVVGMAVIG 221 (802)
Q Consensus 157 ~~~a~~Fl~Ga~~S~laGyiGM~vat~aN~Rta~aA~~~---------------~~~al~vafrgG~vmGl~vvgl~llg 221 (802)
+.+-+..++|+..-.+-.-.-|+.-.|+--+..++-||- +.+..+++-|+ +.-.+..-++...-
T Consensus 484 p~vl~GlliG~~lpflFs~l~m~AVg~aA~~mV~EVRrQFre~pGi~eg~~kPdY~~cV~I~T~~-AlkeMi~P~ll~v~ 562 (666)
T PRK00733 484 PYVLVGLLIGGMLPFLFSALAMTAVGRAAGAMVEEVRRQFREIPGIMEGTAKPDYARCVDISTKA-ALKEMILPGLLAVL 562 (666)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCChHHHHHHHHHH-HHHhhhhHHHHHHH
Confidence 567788899998888877777877777666666665542 33444443322 22222222221111
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccchhhhhhhhhHHHHHHHHHHhhcchhhhhhhhccccchhhhcCCCC---CCCCCcc
Q 003697 222 IAILYATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPE---DDPRNPA 298 (802)
Q Consensus 222 l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~gfg~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPE---DDPRNPa 298 (802)
.-++. ..+++ .+-+.-.+.|--.-+-+.|+|.--+||-+-.|-.. +|.|--+ .|.+.-+
T Consensus 563 ~Pi~v---G~~lG--------~~al~G~L~G~~vsG~~lAi~m~NaGGAWDNAKKy-------IE~g~~gGKgS~aHkAa 624 (666)
T PRK00733 563 APIAV---GFLLG--------PEALGGLLAGAIVTGLLLAIFMANAGGAWDNAKKY-------IEDGNHGGKGSEAHKAA 624 (666)
T ss_pred HHHHH---HHHhh--------HHHHHHHHHHHHHHHHHHHHHHcccchhHHHHHHH-------HhcCCCCCCCcHHHhcc
Confidence 11111 11111 01122234444444567899999999999887644 5665443 4556789
Q ss_pred hhccccCCCcccccccccch
Q 003697 299 VIADLVGDNVGDCAARGADL 318 (802)
Q Consensus 299 vIADnVGDNVGD~AGmgADL 318 (802)
|+.|.|||=-=|-+|..-+.
T Consensus 625 VvGDTVGDPfKDTaGPslni 644 (666)
T PRK00733 625 VVGDTVGDPFKDTAGPALNP 644 (666)
T ss_pred ccCCCCCCCccccccchhhH
Confidence 99999999999999997775
No 9
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=50.17 E-value=3.9e+02 Score=29.54 Aligned_cols=126 Identities=12% Similarity=0.173 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhheeccCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 003697 324 AEIISAMILGGTMVQRCKLENPSGFILFPLVVHSFDLVISSIGILSIRSSRDSSVKAPIEDPMAILQKGYSVTVVLAVLT 403 (802)
Q Consensus 324 ~siiaamilg~~~~~~~~~~~~~~~~~~Pl~v~a~gii~Siig~~~v~~~~~~~~~~~~~~~~~aL~~g~~vs~~l~~v~ 403 (802)
..++.+.+.|...|.|-. ..-.+ ++..+.++.-++|+.+...+++++. .++..+..+|++.. .+++.++
T Consensus 81 ~QLvg~sl~gv~~fgEW~-----~~~~~--~~G~~Al~liiiGv~lts~~~~~~~---~~~~~~~~~kgi~~-Ll~stig 149 (269)
T PF06800_consen 81 LQLVGTSLIGVLFFGEWT-----TTTQK--IIGFLALVLIIIGVILTSYQDKKSD---KSSSKSNMKKGILA-LLISTIG 149 (269)
T ss_pred HHHHHHHHHHHhhcCCCC-----CcchH--HHHHHHHHHHHHHHHHhcccccccc---ccccccchhhHHHH-HHHHHHH
Confidence 346666666666665421 11112 3344566777788877554443221 11113456666653 4444444
Q ss_pred HHHHHHHhhccCCCCcchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHhhcCCCchhHHHHHHhhh
Q 003697 404 FGASTRWLLYTEQAPSAWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRALALSSSTGHGTNIIAGVSLG 475 (802)
Q Consensus 404 ~~~~~~~~l~~~~~~~~~~~~f~~~~iGl~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnII~Gla~G 475 (802)
.. .|..+|...+- ..+..++-=.+|++.+.++--.-+ ++|.++ .+ +.-|+++|+--+
T Consensus 150 y~--~Y~~~~~~~~~-~~~~~~lPqaiGm~i~a~i~~~~~------~~~~~~----k~--~~~nil~G~~w~ 206 (269)
T PF06800_consen 150 YW--IYSVIPKAFHV-SGWSAFLPQAIGMLIGAFIFNLFS------KKPFFE----KK--SWKNILTGLIWG 206 (269)
T ss_pred HH--HHHHHHHhcCC-ChhHhHHHHHHHHHHHHHHHhhcc------cccccc----cc--hHHhhHHHHHHH
Confidence 32 23333332222 235677788889888766443322 233332 11 366899998644
No 10
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=49.60 E-value=3e+02 Score=28.99 Aligned_cols=63 Identities=17% Similarity=0.334 Sum_probs=36.6
Q ss_pred CCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhccCcchHH-HH-HHHH----HHHHHHHHHHHHHHHhcCCCCc
Q 003697 28 KPYVPMIFRILMRINIRVLFVLLLLCLGVVFYIGASTSPII-VF-VFSV----CIITFILSIYLCKWVLSKDEGP 96 (802)
Q Consensus 28 ~~~~~~~~~~~~~~d~r~~~~~~~l~~~~~~f~~~~t~~~~-~~-~~~~----~~~~l~~a~~~~~~v~~~~~G~ 96 (802)
++.+..+-..+++-|.|.++++.++- +..++.|.+ ++ ..++ .+=+|+.+..++.++.+..+++
T Consensus 47 ~~~~~~~~~Il~~nDir~LiglIlFV------LAl~s~p~ialimi~iAs~llP~PsLVIaYCl~mqi~~~~~~~ 115 (189)
T PF05313_consen 47 PGIKNLFPNILMNNDIRSLIGLILFV------LALTSTPLIALIMIIIASLLLPFPSLVIAYCLSMQIYNPGANN 115 (189)
T ss_pred ccccccchHHHhcccHHHHHHHHHHH------HhccCccHHHHHHHHHHHHHcCccHHHHHHHHHheeecCCCcc
Confidence 34444455678999999988875543 222333322 11 1122 2237888888888887654444
No 11
>PRK08382 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=47.89 E-value=55 Score=34.50 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=42.9
Q ss_pred cCCCChhHHhhhhhccccCCcccccchhhh--HHH----HHHHHHHHHHHHHHHhhhhcCCCCcccccCCchHHHHHHHH
Q 003697 549 MSQQPESVREITDVLDAVGNTTKATTKGFA--IGS----AALASFLLFSAYMDEVATFAQEPFKQVDIAIPEVFVGGLLG 622 (802)
Q Consensus 549 Ms~l~~~VR~~tD~LDavGNTT~Ai~KGfA--IGS----AaLaal~LF~ay~~~~~~~~~~~~~~~~l~~P~Vl~GlliG 622 (802)
|+.+|++.|++...- .+|..-|++- --| -.+..+.||.-++-..+ +++-...++|+++|
T Consensus 1 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~llLf~~WllLsg----------~~s~~~l~lG~i~~ 65 (201)
T PRK08382 1 MSRMPFYLRERLEEV-----KERVLYEIYEAQKLPPWERFVLTWLILLAFWVIISG----------DLSPRGLILGALTT 65 (201)
T ss_pred CCcchHHHHHHHhhc-----ccccceeecccccCCcchHHHHHHHHHHHHHHHHhC----------CcCHHHHHHHHHHH
Confidence 789999999998765 2222222221 111 35566777777765322 22334578899998
Q ss_pred HHHHHHHHHHH
Q 003697 623 SMLIFLFSGWA 633 (802)
Q Consensus 623 ~mlpflFSa~~ 633 (802)
..+++++.-+.
T Consensus 66 ~~v~~l~~~~~ 76 (201)
T PRK08382 66 LIIASYMRDFL 76 (201)
T ss_pred HHHHHHHHhhc
Confidence 88887777653
No 12
>PRK11677 hypothetical protein; Provisional
Probab=47.83 E-value=22 Score=35.30 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCchhHHH
Q 003697 425 ALCGLVGIITAYIFVWITKYYTDYKHEPVRAL 456 (802)
Q Consensus 425 f~~~~iGl~~g~lI~~~TeYyTs~~~~PVr~I 456 (802)
|.+.++|+++|++||++.-.||+.+.+--+++
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~~q~~l 34 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLRQQQAL 34 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHH
Confidence 35677899999999999999988776544444
No 13
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.25 E-value=1e+02 Score=30.16 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=29.6
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHHHH------HHHHHh
Q 003697 84 YLCKWVLSKDEGPPEMAQISDAIRDGAEGF------FRTQYG 119 (802)
Q Consensus 84 ~~~~~v~~~~~G~~~m~~Is~~I~eGA~af------L~~qy~ 119 (802)
-+.-.|+.+++--+++++=++..++||..| |+|+|-
T Consensus 47 ~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~w 88 (116)
T KOG0860|consen 47 ENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMW 88 (116)
T ss_pred HhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888899999999999988 667763
No 14
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=40.90 E-value=5.6e+02 Score=28.68 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=45.5
Q ss_pred chhHHHHHH-hhhhHHHHHH---HHHHHHHHH--hhccCcc---hHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCcHHH
Q 003697 31 VPMIFRILM-RINIRVLFVL---LLLCLGVVF--YIGASTS---PIIVFVFSVCIITFILSIYLCKW--VLSKDEGPPEM 99 (802)
Q Consensus 31 ~~~~~~~~~-~~d~r~~~~~---~~l~~~~~~--f~~~~t~---~~~~~~~~~~~~~l~~a~~~~~~--v~~~~~G~~~m 99 (802)
|.+++.... ++.+|..-.. ++|++-.++ .+|+-+. +..+--.+.+++=++|++...+- =.+.++|.|+|
T Consensus 84 KTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~~~~~~eE~ 163 (294)
T KOG2881|consen 84 KTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMSPSEGQEEL 163 (294)
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhH
Confidence 345555533 4455554444 444444444 3344442 22344456677778888776553 36677888999
Q ss_pred HHHHHHHHH
Q 003697 100 AQISDAIRD 108 (802)
Q Consensus 100 ~~Is~~I~e 108 (802)
+|+-.-|++
T Consensus 164 eEVe~el~~ 172 (294)
T KOG2881|consen 164 EEVEAELAK 172 (294)
T ss_pred HHHHHHHHh
Confidence 999888766
No 15
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=39.33 E-value=1.2e+02 Score=29.90 Aligned_cols=27 Identities=7% Similarity=0.220 Sum_probs=15.6
Q ss_pred ChHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 003697 384 DPMAILQKGYS--VTVVLAVLTFGASTRW 410 (802)
Q Consensus 384 ~~~~aL~~g~~--vs~~l~~v~~~~~~~~ 410 (802)
..++..++++. +-.+++++..++..|+
T Consensus 70 ~~~k~~~~qls~v~Nilvsv~~~~~~~~~ 98 (142)
T PF11712_consen 70 QELKSVKRQLSTVFNILVSVFAVFFAGWY 98 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777763 4444555555555553
No 16
>COG1288 Predicted membrane protein [Function unknown]
Probab=37.68 E-value=1.4e+02 Score=35.36 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 003697 72 FSVCIITFILSIYLCKWVLSKDEG------PPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIF 133 (802)
Q Consensus 72 ~~~~~~~l~~a~~~~~~v~~~~~G------~~~m~~Is~~I~eGA~afL~~qy~~i~~~~i~~~~~i~ 133 (802)
.+..++++.|-.+.+++|+|.|+- +|+-||-...-+++.+.|=.|+--.+.+|..-+.+.++
T Consensus 224 v~~~~~~i~y~~~Ya~KvkkdP~~S~v~~~~~e~r~~f~~~~~~~~~Ft~~~klvL~lf~l~f~~mI~ 291 (481)
T COG1288 224 VVFTLISIIYVYWYASKVKKDPTLSLVYEDDEEFRETFKVEDSGERPFTFRDKLVLLLFTLTFVIMIW 291 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccchHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHH
Confidence 345677888888999999887643 45555555555666667888888777777776665554
No 17
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=37.11 E-value=4.6e+02 Score=30.72 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHH
Q 003697 72 FSVCIITFILSIYLCKWVLSKDEGPPEMAQISDAIRDGAE----GFFRTQYGTISKMACLLALVIF 133 (802)
Q Consensus 72 ~~~~~~~l~~a~~~~~~v~~~~~G~~~m~~Is~~I~eGA~----afL~~qy~~i~~~~i~~~~~i~ 133 (802)
.+..+++..|..+.+++++|+++-+ ...|..+.-++-.+ .+=+||.-++..+.+.+.++++
T Consensus 205 ~i~~~i~~~~~~~ya~kv~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~li~ 269 (465)
T PF03606_consen 205 VIFTLIAIAYVHRYAQKVKKDPSYS-EVYEDDEAEEEEEEEQEEKLTKRPKLYLLLPVLPFVLLIY 269 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccch-hhhhhHHhhhhcccccccccccccceeehHHHHHHHHHHh
Confidence 3456778888888999998887222 22222222222111 1224555555555555554443
No 18
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=33.44 E-value=3.4e+02 Score=31.53 Aligned_cols=135 Identities=13% Similarity=0.122 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCC------CCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HhhccCCCcc
Q 003697 73 SVCIITFILSIYLCKWVLSKD------EGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCI-YLFRNTTPQQ 145 (802)
Q Consensus 73 ~~~~~~l~~a~~~~~~v~~~~------~G~~~m~~Is~~I~eGA~afL~~qy~~i~~~~i~~~~~i~~~-~~~~~~~~~~ 145 (802)
++....+++..+..|..+++. ..-+-.|.+--.+--..--|...|||=+-...+++.+++.+. |..+.+.-..
T Consensus 188 ~v~~~~~v~~~~r~R~~r~~~gl~~~p~~~~~~k~~~~~~~il~~v~~ln~yrGvp~~vlv~~vl~~~~~fvt~rT~fGR 267 (394)
T COG4214 188 LVALAAIVFAGLRGRRRRIRHGLEVPPFWAFVLKLLVIAAIILGLVYVLNSYRGVPNPVLVLLVLLIVFTFVTTRTVFGR 267 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHhhhceeee
Confidence 344455555555555555431 222334444444444445688889987776666665554332 2211111000
Q ss_pred ---------cccccCCCcchhhHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhHHHHhhcHHHHHHHhhhccchh
Q 003697 146 ---------EASGIGRSNSACITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFS 210 (802)
Q Consensus 146 ---------~~~~~~~~~~~~~~a~~Fl~Ga~~S~laGyiGM~vat~aN~Rta~aA~~~~~~al~vafrgG~vm 210 (802)
++.+.+.-+--+.+...|.. ++.+|..-|+-.+.|-|+-|-.|-...--++..-||-||+-|
T Consensus 268 ~VyAiGGN~eAA~LSGInv~r~t~~vF~~---mGvl~AiAgli~taRL~aatp~AG~g~ELdaIAA~fIGGtSl 338 (394)
T COG4214 268 RVYAIGGNPEAARLSGINVERVTLLVFVI---MGVLAAIAGLILTARLNAATPSAGTGFELDAIAACFIGGTSL 338 (394)
T ss_pred EEEEecCCHHHHHhcCCceeehhHHHHHH---HHHHHHHHHHHHHHHhhcCCcCCCcchhHHHHHHHHhccccc
Confidence 11112211222456666765 444445556667778887666554443457888899887653
No 19
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=32.41 E-value=30 Score=35.02 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.5
Q ss_pred HHHhhhhhHhhhhccccccccC
Q 003697 521 MGMLSTAAYVLTMDMFGPIADN 542 (802)
Q Consensus 521 ~GMLst~g~~la~DayGPIaDN 542 (802)
.+||..+...+--|+||||.|.
T Consensus 49 ~~mL~lL~TS~lp~S~GpI~~~ 70 (149)
T PF12331_consen 49 ILMLNLLSTSVLPDSFGPITDD 70 (149)
T ss_pred HHHHHHHHhccCCCCcCCCCCC
Confidence 5899999999999999999984
No 20
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=30.04 E-value=4.2e+02 Score=25.25 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhheeccCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 003697 321 SIAAEIISAMILGGTMVQRCKLENPSGFILFPLVVHSFDLVISSIGILSIRSSRDSSVKAPIEDPMAILQKGYSVTVVLA 400 (802)
Q Consensus 321 Sy~~siiaamilg~~~~~~~~~~~~~~~~~~Pl~v~a~gii~Siig~~~v~~~~~~~~~~~~~~~~~aL~~g~~vs~~l~ 400 (802)
+|..+.+..++++..+..++ . +.=..|..+..+.++++.+|-++.-.+.+ .|-+-.|..+..+-.
T Consensus 14 ~~~~tl~~~l~~a~ll~~~~-~----~e~~~~~~~~~i~~ls~~~GG~~a~~~~~----------~kG~l~G~~~Gl~y~ 78 (116)
T PF12670_consen 14 AYIITLILLLLLALLLYFTS-L----SESILPWLVVIIYILSVFIGGFYAGRKAG----------SKGWLHGLLVGLLYF 78 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcC-C----CHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------cchHHHHHHHHHHHH
Confidence 45555555555554443221 1 12357888888889999999887643321 134444544444332
Q ss_pred HHHHHHHHHHhhccCCC-CcchhHHHHHHHHHHHHHH
Q 003697 401 VLTFGASTRWLLYTEQA-PSAWLNFALCGLVGIITAY 436 (802)
Q Consensus 401 ~v~~~~~~~~~l~~~~~-~~~~~~~f~~~~iGl~~g~ 436 (802)
. ..+.++....++... ...+.+...|.+.|.+-|+
T Consensus 79 ~-il~lis~~~~~~~~~~~~~~~~~~~~~~~G~lGG~ 114 (116)
T PF12670_consen 79 L-ILLLISFLFGPGPFSGSSQLLKLLLCLLAGALGGM 114 (116)
T ss_pred H-HHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhh
Confidence 2 223334433332111 2234566778888877665
No 21
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=28.70 E-value=2e+02 Score=32.33 Aligned_cols=84 Identities=19% Similarity=0.250 Sum_probs=58.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccCcCccccccCCChhhHHHHhhHHHHHhhhhhhhHHHH
Q 003697 612 IPEVFVGGLLGSMLIFLFSGWACSAVGKTAQEVVNEVRRQFIERPGIMEYKEKPDYARCVAIVASASLREMIKPGALAII 691 (802)
Q Consensus 612 ~P~Vl~GlliG~mlpflFSa~~m~aVg~aA~~mV~EVRRQFre~pGimeg~~kPDY~~cV~I~T~~AlkeMi~Pgllavl 691 (802)
++....+..+=..+.++||-.-. .++-...|+=|..|+|=.-+||+..|++.-+| --++..+.+.-.-+.-++++ .
T Consensus 239 ~~~~~~y~~~~~~li~~Fs~~~~-~~~~~p~~iA~~lkk~g~~I~GirpG~~T~~y--L~~~i~~~~~~G~~~l~~ia-~ 314 (346)
T PF00344_consen 239 NLNSPLYIIFYLILIILFSYFFS-FININPKDIAENLKKSGDYIPGIRPGKPTEKY--LNKVIPRLSFLGALFLALIA-V 314 (346)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH-TSSSHHHHHHHHCHCTTSSSSTCTTSCHHHHH--HHHHHHHHHHHHHHHHHHHH-H
T ss_pred CcchHHHHHHHHHHHHHHHHHHh-hccCCHHHHHHHHHHhCCEeCCCCCChhHHHH--HHHHHHHHhhhhHHHHHHHH-H
Confidence 78899999999999999998866 88888988888888888889999999443333 22334444444444444444 3
Q ss_pred hhHhhHHh
Q 003697 692 SPLVIGLL 699 (802)
Q Consensus 692 ~Pi~vG~~ 699 (802)
.|.+++..
T Consensus 315 ~p~~~~~~ 322 (346)
T PF00344_consen 315 LPLIFGLF 322 (346)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHHH
Confidence 45665554
No 22
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=27.96 E-value=1.1e+03 Score=29.65 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCccc
Q 003697 67 IIVFVFSVCIITFILSIYLCKWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQE 146 (802)
Q Consensus 67 ~~~~~~~~~~~~l~~a~~~~~~v~~~~~G~~~m~~Is~~I~eGA~afL~~qy~~i~~~~i~~~~~i~~~~~~~~~~~~~~ 146 (802)
.+.++++.+.++++..+.=...|+.++.. ..+++.+ =|++||-+-.++.++...++.. +.+..+..
T Consensus 255 ~v~~Pl~i~~~gii~Siig~~~v~~~~~~--~~~~~~~--------aL~~g~~vs~~l~~i~~~~~~~-~~~~~~~~--- 320 (682)
T PF03030_consen 255 GVLFPLLIAAVGIIASIIGIFFVRTKKGA--TSKDPMK--------ALRRGYIVSSILSIILFFFLTY-WLLGFSFF--- 320 (682)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTT-----SGGGHHH--------HHHHHHHHHHHHHHHHHHHHHH-HHSEETTE---
T ss_pred HHHHHHHHHHHHHHHHHHheeEEEecCCc--cccCHHH--------HHHHHHHHHHHHHHHHHHHHHH-HHHhcccc---
Confidence 45577777777887777766666555322 2223333 3566665555555544433322 11100000
Q ss_pred ccccCCCcchhhHHHHHHHHHHHHHHhhhHHhhhhh
Q 003697 147 ASGIGRSNSACITVAAFLLGALCSGIAGYVGMWVSV 182 (802)
Q Consensus 147 ~~~~~~~~~~~~~a~~Fl~Ga~~S~laGyiGM~vat 182 (802)
+.....|....|-++|.+.+.+-+++--+...
T Consensus 321 ----~~~~~~~~~~~~~~iGl~~g~lI~~~TeYyTs 352 (682)
T PF03030_consen 321 ----GSGISWWGLFGCVLIGLVAGVLIGFITEYYTS 352 (682)
T ss_dssp ----EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ----cCCcchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00011255678889999999998888877765
No 23
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=27.72 E-value=3e+02 Score=28.48 Aligned_cols=44 Identities=11% Similarity=0.278 Sum_probs=28.4
Q ss_pred HHHHhhhHH---HHHHHHHHhcccCcCccccccCCChhhHHHHhhHHHHHhhhh
Q 003697 634 CSAVGKTAQ---EVVNEVRRQFIERPGIMEYKEKPDYARCVAIVASASLREMIK 684 (802)
Q Consensus 634 m~aVg~aA~---~mV~EVRRQFre~pGimeg~~kPDY~~cV~I~T~~AlkeMi~ 684 (802)
+..+|.+-. -+-|++|+++|+. ++-++++.++.+.+.++++-+.
T Consensus 91 l~~iG~sVd~~IVifdRIre~~~~~-------~~~~~~~~~~~s~~~tl~r~i~ 137 (189)
T PF02355_consen 91 LTIIGYSVDDNIVIFDRIREELRAS-------RGKSLREAINISIKQTLSRTID 137 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC--------STS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcceeehHHHHHHhhhC-------CCCCHHHHHHHHHHHHHHHHHH
Confidence 334554443 3568999998763 4567788888877777776554
No 24
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=27.33 E-value=1.2e+02 Score=32.28 Aligned_cols=74 Identities=14% Similarity=0.335 Sum_probs=37.4
Q ss_pred HHHHHHHhcccCcCccccccCCChhhHHHHhhHHHHHhhhhhhhHHHHhhHhhHHhh-hhhhccccccchhHHHHHHHHH
Q 003697 644 VVNEVRRQFIERPGIMEYKEKPDYARCVAIVASASLREMIKPGALAIISPLVIGLLF-RILGYYTGHALLGAKVVAALLM 722 (802)
Q Consensus 644 mV~EVRRQFre~pGimeg~~kPDY~~cV~I~T~~AlkeMi~Pgllavl~Pi~vG~~f-~~~~~~~~~~llG~~al~G~L~ 722 (802)
++|.+||+.|+.+| .|..+++.- +.||+..|.+...++-++ +++. ...+.. .+ +.++=-++
T Consensus 171 v~d~i~e~~~~~~~-------~~~~~a~~~----a~~~~~~~ii~ttltti~-~flpl~~~~g~----~~--~~~a~~~~ 232 (246)
T TIGR00966 171 VFDRIRENLRKYTR-------KTFTEVINL----SINQTLSRTINTSLTTLL-AVLALYVFGGG----VI--KDFSLALL 232 (246)
T ss_pred EehHHHHHHhhccC-------CCHHHHHHH----HHHHHHHHHHHHHHHHHH-HHHHHHHhcch----HH--HHHHHHHH
Confidence 56888887764322 245666654 455666666655544332 2221 111111 11 23444556
Q ss_pred HHHHHHHHHHHHh
Q 003697 723 FATVSGILMALFL 735 (802)
Q Consensus 723 G~~vsG~~~Ai~m 735 (802)
+++++|.++++|.
T Consensus 233 ~Gli~~t~~sl~i 245 (246)
T TIGR00966 233 VGVIVGTYSSIFI 245 (246)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666664
No 25
>COG4042 Predicted membrane protein [Function unknown]
Probab=26.96 E-value=2.1e+02 Score=27.11 Aligned_cols=65 Identities=15% Similarity=0.305 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHHHHHHHH--hhccCcchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003697 14 PYQDRPRTFPNMRSKPYVPMIFRILMRINIRVLFVLLLLCLGVVF--YIGASTSPIIVFVFSVCIITFILSIYLCKWVLS 91 (802)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~~~l~~~~~~--f~~~~t~~~~~~~~~~~~~~l~~a~~~~~~v~~ 91 (802)
-++|||+++....+.-.-. -+.++|..+++ .+|.+..+...++.++|+++-++..| ...+..
T Consensus 36 i~~ekP~R~Swe~SaiFPT---------------PviAlG~tai~i~~~G~~~i~~a~lgavaG~lsA~~taY-~ek~Fp 99 (104)
T COG4042 36 IPKEKPIRFSWETSAIFPT---------------PVIALGITAIFINLFGDYIIPLASLGAVAGLLSALLTAY-AEKLFP 99 (104)
T ss_pred CCcccccccccccccccCc---------------cHHHhchHHHhHHhcccccchHHHHHHHHHHHHHHHHHH-HHHhcC
Confidence 3578888877654442221 13567777777 56677777777788888888888777 445555
Q ss_pred CCC
Q 003697 92 KDE 94 (802)
Q Consensus 92 ~~~ 94 (802)
+||
T Consensus 100 rPe 102 (104)
T COG4042 100 RPE 102 (104)
T ss_pred CCC
Confidence 543
No 26
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=25.32 E-value=3.3e+02 Score=28.69 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 003697 156 ACITVAAFLLGALCSGIA 173 (802)
Q Consensus 156 ~~~~a~~Fl~Ga~~S~la 173 (802)
+.+..++|+.|.+...-.
T Consensus 154 ~~~~~~sfl~g~~~~~wl 171 (205)
T PF07895_consen 154 SFQSLLSFLSGLLLLMWL 171 (205)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456778888887765433
No 27
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=25.28 E-value=2.4e+02 Score=25.22 Aligned_cols=39 Identities=10% Similarity=0.290 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHH
Q 003697 96 PPEMAQISDAIRDGAE----GFFRTQYGTISKMACLLALVIFC 134 (802)
Q Consensus 96 ~~~m~~Is~~I~eGA~----afL~~qy~~i~~~~i~~~~~i~~ 134 (802)
+++|++-|+..+..|. .+..+.||...+++.++.+++++
T Consensus 40 t~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~ 82 (89)
T PF00957_consen 40 TEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILI 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhH
Confidence 3455555555555554 35567787777766666655543
No 28
>PRK11588 hypothetical protein; Provisional
Probab=24.76 E-value=7.2e+02 Score=30.02 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHHHHHHHH
Q 003697 72 FSVCIITFILSIYLCKWVLSKDEGPPEMAQISDAIRDG-----AEGFFRTQYGTISKMACLLALVIF 133 (802)
Q Consensus 72 ~~~~~~~l~~a~~~~~~v~~~~~G~~~m~~Is~~I~eG-----A~afL~~qy~~i~~~~i~~~~~i~ 133 (802)
++.-++++.|-.+.+++|+|.|+-+ -|.|..+..++. ...|=+||.-.+..+.+.+.++++
T Consensus 237 ~v~~~i~i~yv~~YA~kVkkdP~kS-~~~~~~~~~~~~~~~~~~~~~t~r~klvL~~f~~~~~~~i~ 302 (506)
T PRK11588 237 VIFTLIGLIFTMVYASRVKKNPLLS-RVHESDRFFREKQADVEQRPFTFGDWLVLLVLTAVMVWVIW 302 (506)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccc-ccccchhhhhhhhccccccCcChhhHHHHHHHHHHHHHHHH
Confidence 3345667888888899997765422 222221111111 125667887777777766665554
No 29
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=24.75 E-value=5.3e+02 Score=25.40 Aligned_cols=60 Identities=23% Similarity=0.332 Sum_probs=31.0
Q ss_pred hhccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-HHH---HHHHHHHHHHhHHH
Q 003697 59 YIGASTSPIIVFVFSVCIITFILSIYLCKWVLSKDEGPPEMAQISDA-IRD---GAEGFFRTQYGTIS 122 (802)
Q Consensus 59 f~~~~t~~~~~~~~~~~~~~l~~a~~~~~~v~~~~~G~~~m~~Is~~-I~e---GA~afL~~qy~~i~ 122 (802)
.+.++..++.++ .+++|+++.|...+-..+.+=+|.+-.++-+ --- |=.||+|.||--+.
T Consensus 28 ~L~~s~VpFSiF----PlIaLvLavy~LyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA~vraqyPeiG 91 (117)
T PF07226_consen 28 ALFSSEVPFSIF----PLIALVLAVYCLYQRYLNHPMPEGTPKLALACFFLGLFGYSAFVRAQYPEIG 91 (117)
T ss_pred HHHhcccccHHH----HHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHhchhhh
Confidence 444555566656 4456666666544433333333333333332 222 33588999997654
No 30
>TIGR00245 conserved hypothetical protein TIGR00245.
Probab=24.52 E-value=75 Score=34.46 Aligned_cols=84 Identities=19% Similarity=0.377 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccCcCccccccCCChhhHHHHhhHHHHHhhhhhhhHHHHhhHh
Q 003697 616 FVGGLLGSMLIFLFSGWACSAVGKTAQEVVNEVRRQFIERPGIMEYKEKPDYARCVAIVASASLREMIKPGALAIISPLV 695 (802)
Q Consensus 616 l~GlliG~mlpflFSa~~m~aVg~aA~~mV~EVRRQFre~pGimeg~~kPDY~~cV~I~T~~AlkeMi~Pgllavl~Pi~ 695 (802)
+.|.++|- +|.+++.+..+.-+|+|+|=+|+...+.=-+.| ++.++-..|.|+|.-+.|.+=..- .
T Consensus 123 l~GMiiGN---------sM~a~sLa~~rl~~~l~~~~~~ie~~LaLGat~--~~A~~~~~r~Ai~aaliP~insm~---~ 188 (248)
T TIGR00245 123 LMGMVIGN---------TMNTISLALNRLISMVKSERDEIQGYLSLGATP--KQAIAPFIRNAIKASLIPTVNSTK---T 188 (248)
T ss_pred HHHHHHhh---------HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCH--HHHHHHHHHHHHHHHhhchHHhcc---h
Confidence 56777765 689999999999999999966664444322222 455555667777777777654442 2
Q ss_pred hHHhhhhhhccccccchhH
Q 003697 696 IGLLFRILGYYTGHALLGA 714 (802)
Q Consensus 696 vG~~f~~~~~~~~~~llG~ 714 (802)
+|++. ..|-|+++-+-|.
T Consensus 189 vGlV~-LPGmMtGqIL~G~ 206 (248)
T TIGR00245 189 VGLVS-LPGMMTGQILAGA 206 (248)
T ss_pred hheee-chhHHHHHHhcCC
Confidence 55542 3344444444343
No 31
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=23.91 E-value=9.1e+02 Score=26.12 Aligned_cols=35 Identities=23% Similarity=0.098 Sum_probs=20.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHH
Q 003697 420 AWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRAL 456 (802)
Q Consensus 420 ~~~~~f~~~~iGl~~g~lI~~~TeYyTs~~~~PVr~I 456 (802)
.||.-....++|-+--.++.++--.. ..|||+|+-
T Consensus 70 ~~~~~~~l~~~Gglwy~~lsl~~~~l--~p~r~~rqa 104 (284)
T PF12805_consen 70 EALEHALLFLAGGLWYLLLSLLWWPL--RPYRPVRQA 104 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHH
Confidence 34444566666655555555555444 356999863
No 32
>COG3548 Predicted integral membrane protein [Function unknown]
Probab=23.61 E-value=6.5e+02 Score=26.80 Aligned_cols=73 Identities=22% Similarity=0.384 Sum_probs=38.0
Q ss_pred hHHHHHHhhhhHHH-HHH---HHHHHHHHH--hhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 003697 33 MIFRILMRINIRVL-FVL---LLLCLGVVF--YIG-ASTSPIIVFVFSVCIITFILSIYLCKWVLSKDEGPPEMAQISDA 105 (802)
Q Consensus 33 ~~~~~~~~~d~r~~-~~~---~~l~~~~~~--f~~-~~t~~~~~~~~~~~~~~l~~a~~~~~~v~~~~~G~~~m~~Is~~ 105 (802)
+.++...++|.|.. ... ..+++.++. +.+ -.+.+.-......-++...++..+..|-..+|+|+++-++.+..
T Consensus 72 ~~f~~ikki~~~i~~~N~i~L~~vsLlPfsT~~~~~~~~~~~~~~~~~~~l~l~~~~~l~m~~~~~~~n~~~~~~~~~~~ 151 (197)
T COG3548 72 RIFGRIKKITGRIIWINFIWLLLVSLLPFSTAWIGEIHTDFLPALLYLVLLLLIAFAYLLMSWQYIKDNGHKSARERAQT 151 (197)
T ss_pred HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 34445566676662 222 333333333 444 33443333333344455556666667777778888876655544
No 33
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=23.49 E-value=96 Score=27.82 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcccCcCccccccCCChhhHHHH
Q 003697 642 QEVVNEVRRQFIERPGIMEYKEKPDYARCVAI 673 (802)
Q Consensus 642 ~~mV~EVRRQFre~pGimeg~~kPDY~~cV~I 673 (802)
+++.+|+-||+++ +.|+.++-++-
T Consensus 8 ~r~L~eiEr~L~~--------~DP~fa~~l~~ 31 (82)
T PF11239_consen 8 QRRLEEIERQLRA--------DDPRFAARLRS 31 (82)
T ss_pred HHHHHHHHHHHHh--------cCcHHHHHhcc
Confidence 5788999999974 35555555444
No 34
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=22.62 E-value=6.9e+02 Score=31.28 Aligned_cols=63 Identities=27% Similarity=0.418 Sum_probs=47.5
Q ss_pred hhhhhhhHHHHHHHHHHhhcchhhhhhhhccccchhhhcC--------CCCCCCCCcchhccccCCCcccccccccch
Q 003697 249 LLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQG--------IPEDDPRNPAVIADLVGDNVGDCAARGADL 318 (802)
Q Consensus 249 ~i~gfg~GaS~iALFaRvGGGIyTKAADVGADLVGKVEag--------IPEDDPRNPavIADnVGDNVGD~AGmgADL 318 (802)
.+.|.-.-+-+.|+|.-=+||-+-+|=.. +|.| -.-.|.+.-+|+.|.|||=-=|-+|..-+.
T Consensus 604 lL~G~~vsG~~lAi~m~NaGGAWDNAKKy-------IE~G~~~~~~~ggKGS~aHkAaVvGDTVGDPfKDTaGPslNi 674 (697)
T TIGR01104 604 VLAGVLVSGVQIAISASNTGGAWDNAKKY-------IEAGSEHARSLGPKGSEAHKAAVIGDTVGDPLKDTSGPSLNI 674 (697)
T ss_pred HHHHHHHHHHHHHHHHhcCcchHHhHHHH-------HhcCccccccCCCCCcHHhhccccCCCCCCCccccccchHhH
Confidence 33444434457899999999999887644 5665 244567778999999999999999997765
No 35
>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)
Probab=22.32 E-value=36 Score=29.09 Aligned_cols=7 Identities=71% Similarity=1.426 Sum_probs=5.8
Q ss_pred CCCCCcc
Q 003697 292 DDPRNPA 298 (802)
Q Consensus 292 DDPRNPa 298 (802)
.|||||-
T Consensus 39 NDPRNP~ 45 (54)
T PF04911_consen 39 NDPRNPR 45 (54)
T ss_pred cCCCChh
Confidence 6999994
No 36
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=22.23 E-value=8.2e+02 Score=24.67 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 003697 211 AIVVVGMAVIGIAILY 226 (802)
Q Consensus 211 Gl~vvgl~llgl~~l~ 226 (802)
|+...|+|++-+.+.+
T Consensus 143 ~i~~~glGlll~~~~~ 158 (181)
T PF08006_consen 143 GIGLFGLGLLLIVITF 158 (181)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444433333
No 37
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=21.99 E-value=4.8e+02 Score=28.77 Aligned_cols=38 Identities=11% Similarity=0.299 Sum_probs=22.5
Q ss_pred HHHHHHHhcccCcCccccccCCChhhHHHHhhHHHHHhhhhhhhHHHHh
Q 003697 644 VVNEVRRQFIERPGIMEYKEKPDYARCVAIVASASLREMIKPGALAIIS 692 (802)
Q Consensus 644 mV~EVRRQFre~pGimeg~~kPDY~~cV~I~T~~AlkeMi~Pgllavl~ 692 (802)
+.|.+|++.|+.|+ .|++++++-+. +|...|.+..-++
T Consensus 200 v~drire~~~~~~~-------~~~~~av~~a~----~~~~~~~l~TslT 237 (289)
T PRK13022 200 VFDRIRENFRKIRR-------KTFAEIINLSI----NQTLSRTIITSLT 237 (289)
T ss_pred EeeHHHHHHhhccC-------CCHHHHHHHHH----HHHHHHHHHHHHH
Confidence 46788888765432 46778876554 4445555544443
No 38
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.79 E-value=94 Score=30.29 Aligned_cols=25 Identities=12% Similarity=0.377 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCch
Q 003697 428 GLVGIITAYIFVWITKYYTDYKHEP 452 (802)
Q Consensus 428 ~~iGl~~g~lI~~~TeYyTs~~~~P 452 (802)
+++|+++|++||++.-.+++.+.+-
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~~~ 26 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQQK 26 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccchhh
Confidence 4677888888888888888766543
No 39
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. In humans, 19 Wnt proteins have been identified that share 27% to 83% amino-acid sequence identity and a conserved pattern of 23 or 24 cysteine residues []. Wnt genes are highly conserved between vertebrate species sharing overall sequence identity and gene structure, and are slightly less conserved between vertebrates and invertebrates.; GO: 0005102 receptor binding, 0007275 multicellular organismal development, 0016055 Wnt receptor signaling pathway, 0005576 extracellular region; PDB: 4F0A_B.
Probab=20.19 E-value=87 Score=34.91 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=21.2
Q ss_pred HHHHHhhhHHHHHHHHHHhcccC
Q 003697 633 ACSAVGKTAQEVVNEVRRQFIER 655 (802)
Q Consensus 633 ~m~aVg~aA~~mV~EVRRQFre~ 655 (802)
.|.+|.+++..-++|+++|||..
T Consensus 22 ~m~~i~~G~~~ai~ECq~QF~~~ 44 (310)
T PF00110_consen 22 LMPSIAEGAKMAIEECQHQFRNR 44 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 68999999999999999999964
Done!