Query 003698
Match_columns 802
No_of_seqs 363 out of 2193
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:20:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02784 alpha-amylase 100.0 4E-168 8E-173 1449.4 72.8 797 1-802 94-894 (894)
2 PLN00196 alpha-amylase; Provis 100.0 3.5E-71 7.7E-76 621.2 40.8 391 410-801 24-427 (428)
3 PLN02361 alpha-amylase 100.0 8.5E-71 1.8E-75 611.3 41.1 386 409-801 10-401 (401)
4 PRK10785 maltodextrin glucosid 100.0 3E-67 6.5E-72 616.1 28.7 372 372-776 122-559 (598)
5 PRK09505 malS alpha-amylase; R 100.0 7.8E-60 1.7E-64 552.8 31.0 363 372-775 190-681 (683)
6 PRK09441 cytoplasmic alpha-amy 100.0 1.6E-58 3.4E-63 531.5 38.7 348 411-777 4-430 (479)
7 TIGR02456 treS_nterm trehalose 100.0 3E-55 6.5E-60 510.5 31.3 333 425-777 24-490 (539)
8 TIGR02403 trehalose_treC alpha 100.0 1E-53 2.2E-58 497.0 29.4 336 425-778 23-502 (543)
9 PRK10933 trehalose-6-phosphate 100.0 6.6E-52 1.4E-56 481.3 32.6 352 371-778 10-508 (551)
10 TIGR02402 trehalose_TreZ malto 100.0 5.7E-49 1.2E-53 456.0 31.8 341 405-779 92-538 (542)
11 TIGR02104 pulA_typeI pullulana 100.0 1.9E-49 4.2E-54 467.0 26.6 343 427-794 162-599 (605)
12 TIGR02100 glgX_debranch glycog 100.0 3E-48 6.5E-53 458.7 30.7 320 405-752 154-578 (688)
13 PRK14510 putative bifunctional 100.0 2.5E-48 5.3E-53 482.0 29.8 354 377-764 116-595 (1221)
14 PF00128 Alpha-amylase: Alpha 100.0 1.8E-49 3.8E-54 428.6 14.4 284 426-727 1-309 (316)
15 PRK03705 glycogen debranching 100.0 8.5E-48 1.8E-52 451.6 29.1 361 403-791 147-631 (658)
16 TIGR01515 branching_enzym alph 100.0 9.1E-48 2E-52 452.7 29.2 331 407-778 139-549 (613)
17 PRK12313 glycogen branching en 100.0 2.2E-47 4.8E-52 452.1 31.2 333 406-777 147-561 (633)
18 PRK05402 glycogen branching en 100.0 1.3E-46 2.8E-51 450.5 29.8 350 406-794 241-680 (726)
19 PRK14706 glycogen branching en 100.0 7E-45 1.5E-49 426.4 29.3 333 407-777 145-556 (639)
20 TIGR02102 pullulan_Gpos pullul 100.0 3.5E-44 7.5E-49 435.1 31.3 345 404-777 449-948 (1111)
21 PRK12568 glycogen branching en 100.0 1.2E-42 2.6E-47 406.6 31.8 344 404-792 244-673 (730)
22 TIGR03852 sucrose_gtfA sucrose 100.0 5.3E-43 1.2E-47 393.1 23.3 333 412-779 3-463 (470)
23 PRK13840 sucrose phosphorylase 100.0 7.5E-42 1.6E-46 386.0 30.4 319 412-765 5-453 (495)
24 COG0366 AmyA Glycosidases [Car 100.0 3.4E-42 7.5E-47 398.3 19.5 363 372-779 1-486 (505)
25 PRK14705 glycogen branching en 100.0 3.2E-41 7E-46 411.5 27.7 329 406-780 747-1158(1224)
26 PLN02960 alpha-amylase 100.0 2.2E-40 4.7E-45 387.4 30.8 333 406-778 395-823 (897)
27 TIGR02103 pullul_strch alpha-1 100.0 1.9E-40 4.1E-45 395.9 24.0 348 404-765 250-818 (898)
28 PLN02447 1,4-alpha-glucan-bran 100.0 3.2E-38 6.9E-43 370.0 30.5 329 407-776 230-661 (758)
29 PLN02877 alpha-amylase/limit d 100.0 1.6E-38 3.5E-43 378.1 27.6 349 404-765 337-887 (970)
30 KOG0471 Alpha-amylase [Carbohy 100.0 5.4E-38 1.2E-42 363.6 22.5 371 406-780 17-507 (545)
31 TIGR02455 TreS_stutzeri trehal 100.0 2.1E-36 4.6E-41 342.3 31.4 348 432-800 77-680 (688)
32 COG1523 PulA Type II secretory 100.0 1.1E-37 2.5E-42 362.6 18.8 327 398-752 163-597 (697)
33 TIGR02401 trehalose_TreY malto 100.0 9.2E-35 2E-39 342.2 29.3 186 425-610 12-287 (825)
34 COG0296 GlgB 1,4-alpha-glucan 100.0 5.2E-35 1.1E-39 335.2 23.3 339 406-780 144-563 (628)
35 KOG0470 1,4-alpha-glucan branc 100.0 4.9E-30 1.1E-34 291.1 20.7 167 406-587 229-408 (757)
36 PRK14511 maltooligosyl trehalo 100.0 3E-28 6.4E-33 288.4 29.6 82 425-506 16-99 (879)
37 PLN03244 alpha-amylase; Provis 100.0 9.4E-28 2E-32 276.5 24.4 301 408-776 402-796 (872)
38 KOG2212 Alpha-amylase [Carbohy 99.9 2E-26 4.3E-31 240.0 23.1 332 407-779 25-443 (504)
39 PLN02784 alpha-amylase 99.9 5.9E-26 1.3E-30 265.4 12.7 128 174-302 76-210 (894)
40 smart00642 Aamy Alpha-amylase 99.9 8.7E-25 1.9E-29 216.8 10.8 92 412-503 2-97 (166)
41 PRK14507 putative bifunctional 99.8 7.6E-19 1.6E-23 220.1 17.7 79 425-503 754-834 (1693)
42 COG3280 TreY Maltooligosyl tre 99.7 7.8E-17 1.7E-21 183.3 14.9 78 427-504 17-96 (889)
43 TIGR01531 glyc_debranch glycog 99.7 9.5E-15 2.1E-19 178.4 26.4 82 425-506 128-215 (1464)
44 PF14701 hDGE_amylase: glucano 98.7 4.7E-08 1E-12 109.1 8.3 83 425-507 18-108 (423)
45 PF14872 GHL5: Hypothetical gl 98.5 3.6E-07 7.8E-12 103.9 10.3 133 425-586 192-393 (811)
46 PF02324 Glyco_hydro_70: Glyco 98.5 2.8E-06 6.2E-11 97.6 15.8 185 544-745 139-400 (809)
47 PF02638 DUF187: Glycosyl hydr 98.0 3.7E-05 8.1E-10 84.3 11.6 141 427-582 17-162 (311)
48 PF02324 Glyco_hydro_70: Glyco 97.8 3.8E-05 8.2E-10 88.6 6.9 77 427-503 585-674 (809)
49 PF14871 GHL6: Hypothetical gl 97.7 0.00034 7.4E-09 67.0 10.8 125 432-582 3-132 (132)
50 PF07821 Alpha-amyl_C2: Alpha- 97.6 0.00019 4.2E-09 58.3 6.0 57 743-801 3-59 (59)
51 KOG3625 Alpha amylase [Carbohy 97.2 0.00028 6E-09 83.3 4.9 81 426-506 139-227 (1521)
52 smart00810 Alpha-amyl_C2 Alpha 97.2 0.0017 3.6E-08 53.3 7.6 58 744-801 4-61 (61)
53 COG1649 Uncharacterized protei 97.1 0.0018 3.9E-08 72.8 9.6 143 426-583 61-208 (418)
54 PRK14508 4-alpha-glucanotransf 96.8 0.047 1E-06 63.7 17.9 43 426-468 23-67 (497)
55 PF11941 DUF3459: Domain of un 96.8 0.0023 4.9E-08 56.6 5.5 46 732-777 1-53 (89)
56 cd06592 GH31_glucosidase_KIAA1 96.6 0.02 4.4E-07 62.7 12.2 136 426-585 27-166 (303)
57 cd06593 GH31_xylosidase_YicI Y 96.3 0.025 5.3E-07 62.1 10.9 140 426-588 21-163 (308)
58 PF02065 Melibiase: Melibiase; 96.1 0.072 1.6E-06 60.3 13.7 137 428-586 57-195 (394)
59 cd06597 GH31_transferase_CtsY 96.1 0.048 1E-06 60.7 11.8 145 427-585 22-188 (340)
60 cd06599 GH31_glycosidase_Aec37 95.5 0.096 2.1E-06 57.8 11.2 138 428-584 28-168 (317)
61 PF13200 DUF4015: Putative gly 95.3 0.11 2.4E-06 56.9 10.6 133 426-584 10-147 (316)
62 PLN02316 synthase/transferase 95.2 0.11 2.3E-06 65.3 11.2 71 214-302 345-421 (1036)
63 PLN02316 synthase/transferase 94.8 0.29 6.4E-06 61.4 13.7 195 75-303 377-582 (1036)
64 PLN02635 disproportionating en 94.7 0.31 6.7E-06 57.3 12.7 23 476-498 224-246 (538)
65 cd06594 GH31_glucosidase_YihQ 94.4 0.067 1.4E-06 59.0 6.2 143 426-586 20-168 (317)
66 PF13199 Glyco_hydro_66: Glyco 94.3 0.17 3.6E-06 59.7 9.4 141 426-584 115-268 (559)
67 cd06602 GH31_MGAM_SI_GAA This 93.2 0.61 1.3E-05 52.0 11.0 139 427-584 22-165 (339)
68 cd06591 GH31_xylosidase_XylS X 93.1 0.16 3.4E-06 56.1 6.1 136 426-584 21-159 (319)
69 PF00150 Cellulase: Cellulase 93.1 0.19 4.2E-06 53.5 6.6 80 408-499 4-85 (281)
70 PF01055 Glyco_hydro_31: Glyco 93.0 0.4 8.7E-06 55.2 9.5 137 426-586 40-182 (441)
71 PF03423 CBM_25: Carbohydrate 92.5 0.18 4E-06 44.7 4.5 33 267-299 54-86 (87)
72 cd06604 GH31_glucosidase_II_Ma 92.5 0.43 9.2E-06 53.2 8.5 133 427-584 22-159 (339)
73 PF03423 CBM_25: Carbohydrate 92.4 0.55 1.2E-05 41.7 7.4 38 75-115 49-86 (87)
74 PRK14507 putative bifunctional 92.4 0.24 5.2E-06 64.9 7.1 54 542-595 1035-1090(1693)
75 PRK10426 alpha-glucosidase; Pr 92.3 0.83 1.8E-05 55.2 11.2 133 428-585 220-364 (635)
76 cd06600 GH31_MGAM-like This fa 92.3 0.22 4.8E-06 54.9 5.9 135 426-584 21-160 (317)
77 PRK14582 pgaB outer membrane N 91.2 1.5 3.3E-05 52.9 11.6 128 428-581 333-465 (671)
78 PF07745 Glyco_hydro_53: Glyco 90.7 0.83 1.8E-05 50.6 8.1 58 432-502 27-84 (332)
79 PF14488 DUF4434: Domain of un 90.6 0.97 2.1E-05 45.1 7.9 69 428-500 19-89 (166)
80 PRK10658 putative alpha-glucos 90.5 0.55 1.2E-05 56.9 7.2 130 428-586 282-420 (665)
81 cd06542 GH18_EndoS-like Endo-b 89.0 1.4 3E-05 46.9 8.1 65 474-583 49-113 (255)
82 cd06598 GH31_transferase_CtsZ 89.0 1 2.2E-05 49.8 7.2 133 427-584 22-164 (317)
83 COG3589 Uncharacterized conser 88.9 0.67 1.5E-05 50.6 5.5 60 426-499 13-72 (360)
84 PF02446 Glyco_hydro_77: 4-alp 88.7 2.3 4.9E-05 50.0 10.3 24 476-499 192-215 (496)
85 PF05913 DUF871: Bacterial pro 88.4 1.1 2.4E-05 50.2 7.1 58 427-499 12-70 (357)
86 TIGR00217 malQ 4-alpha-glucano 88.4 2.3 5E-05 50.1 10.0 24 476-499 212-235 (513)
87 cd06562 GH20_HexA_HexB-like Be 87.8 6 0.00013 44.3 12.5 126 427-574 16-149 (348)
88 KOG3625 Alpha amylase [Carbohy 87.6 13 0.00028 45.7 15.2 68 545-614 495-571 (1521)
89 COG3280 TreY Maltooligosyl tre 87.5 0.54 1.2E-05 56.0 4.0 71 705-775 709-826 (889)
90 cd02742 GH20_hexosaminidase Be 86.6 3.7 8.1E-05 45.0 9.8 122 427-573 14-147 (303)
91 cd06595 GH31_xylosidase_XylS-l 85.8 1.3 2.9E-05 48.2 5.8 129 426-583 22-158 (292)
92 cd06570 GH20_chitobiase-like_1 85.2 11 0.00023 41.7 12.5 123 427-571 16-144 (311)
93 PRK11052 malQ 4-alpha-glucanot 85.0 2.3 4.9E-05 51.9 7.7 24 476-499 355-380 (695)
94 cd06601 GH31_lyase_GLase GLase 84.0 2.7 5.9E-05 46.7 7.2 110 426-584 21-133 (332)
95 cd02875 GH18_chitobiase Chitob 83.9 2.2 4.7E-05 48.0 6.5 32 553-584 91-122 (358)
96 COG1501 Alpha-glucosidases, fa 83.7 2.3 5E-05 52.4 7.1 86 478-584 323-415 (772)
97 PLN02763 hydrolase, hydrolyzin 83.2 2.3 5E-05 53.3 6.8 133 427-583 199-335 (978)
98 PF02449 Glyco_hydro_42: Beta- 82.6 2.8 6E-05 47.3 6.8 121 430-583 11-137 (374)
99 cd06564 GH20_DspB_LnbB-like Gl 82.1 12 0.00027 41.4 11.5 122 427-574 15-155 (326)
100 PF03198 Glyco_hydro_72: Gluca 82.0 2.1 4.4E-05 46.8 5.1 54 429-503 53-106 (314)
101 cd06569 GH20_Sm-chitobiase-lik 80.9 5.4 0.00012 46.2 8.4 77 427-503 20-125 (445)
102 cd06589 GH31 The enzymes of gl 80.5 8.8 0.00019 41.1 9.4 64 426-498 21-88 (265)
103 cd06568 GH20_SpHex_like A subg 80.2 23 0.00049 39.4 12.7 125 427-573 16-153 (329)
104 cd06563 GH20_chitobiase-like T 77.1 27 0.00059 39.2 12.4 127 427-573 16-164 (357)
105 PF10566 Glyco_hydro_97: Glyco 76.6 20 0.00042 38.8 10.4 64 424-495 27-92 (273)
106 cd06545 GH18_3CO4_chitinase Th 76.3 8 0.00017 41.1 7.5 81 475-600 45-130 (253)
107 KOG1065 Maltase glucoamylase a 75.6 19 0.00041 44.1 11.0 133 426-583 308-447 (805)
108 cd06603 GH31_GANC_GANAB_alpha 74.1 4.2 9.2E-05 45.3 4.9 135 426-584 21-162 (339)
109 COG1640 MalQ 4-alpha-glucanotr 73.3 25 0.00055 41.3 10.9 32 676-707 392-423 (520)
110 cd02871 GH18_chitinase_D-like 71.7 14 0.00031 40.6 8.3 63 474-584 58-120 (312)
111 cd06565 GH20_GcnA-like Glycosy 69.3 22 0.00048 38.9 9.1 112 427-574 15-131 (301)
112 TIGR01370 cysRS possible cyste 69.0 17 0.00036 40.2 7.9 38 548-586 135-172 (315)
113 PF01301 Glyco_hydro_35: Glyco 68.0 3.9 8.6E-05 45.2 2.9 56 431-496 26-83 (319)
114 TIGR03849 arch_ComA phosphosul 67.5 16 0.00035 38.6 7.1 45 434-496 76-120 (237)
115 PF13380 CoA_binding_2: CoA bi 66.5 11 0.00024 35.1 5.2 44 428-495 65-108 (116)
116 smart00632 Aamy_C Aamy_C domai 64.3 11 0.00024 32.8 4.4 23 756-778 5-28 (81)
117 PF00728 Glyco_hydro_20: Glyco 64.1 13 0.00027 41.3 6.0 146 415-580 4-162 (351)
118 COG2730 BglC Endoglucanase [Ca 63.6 12 0.00025 42.9 5.7 59 431-496 75-136 (407)
119 COG3867 Arabinogalactan endo-1 63.4 20 0.00043 38.9 6.7 59 431-498 65-126 (403)
120 smart00812 Alpha_L_fucos Alpha 61.7 61 0.0013 36.9 10.9 141 431-608 83-235 (384)
121 PF08821 CGGC: CGGC domain; I 60.9 29 0.00062 32.1 6.6 67 412-494 38-104 (107)
122 cd06547 GH85_ENGase Endo-beta- 60.3 11 0.00024 42.1 4.6 28 559-586 88-115 (339)
123 PF02446 Glyco_hydro_77: 4-alp 59.5 8.8 0.00019 45.1 3.8 54 426-479 15-71 (496)
124 PF14701 hDGE_amylase: glucano 59.2 14 0.0003 42.3 5.2 55 545-601 360-422 (423)
125 PRK15452 putative protease; Pr 58.5 53 0.0011 38.1 9.8 53 426-494 11-64 (443)
126 PF14883 GHL13: Hypothetical g 58.2 1.4E+02 0.003 32.6 12.0 122 431-580 19-142 (294)
127 PF13204 DUF4038: Protein of u 58.2 24 0.00052 38.5 6.7 70 427-500 28-110 (289)
128 PF00724 Oxidored_FMN: NADH:fl 57.9 44 0.00095 37.3 8.9 68 430-505 37-107 (341)
129 PLN02950 4-alpha-glucanotransf 55.2 36 0.00078 43.0 8.3 54 426-479 280-339 (909)
130 TIGR01210 conserved hypothetic 54.9 21 0.00046 39.4 5.6 60 432-499 117-178 (313)
131 PF02679 ComA: (2R)-phospho-3- 54.7 27 0.00058 37.2 6.0 55 425-497 73-134 (244)
132 PF11852 DUF3372: Domain of un 54.6 29 0.00062 34.8 5.9 37 729-765 43-90 (168)
133 PRK11052 malQ 4-alpha-glucanot 54.2 21 0.00047 43.6 6.0 57 426-482 162-223 (695)
134 PLN03059 beta-galactosidase; P 54.0 18 0.00039 44.8 5.3 59 430-496 60-118 (840)
135 TIGR00539 hemN_rel putative ox 51.3 27 0.00058 39.2 5.9 64 432-503 100-164 (360)
136 PF02806 Alpha-amylase_C: Alph 51.2 22 0.00048 31.4 4.2 25 754-778 5-33 (95)
137 PRK07094 biotin synthase; Prov 50.9 22 0.00047 39.2 4.9 63 432-502 129-191 (323)
138 PRK08207 coproporphyrinogen II 50.8 27 0.00058 41.1 5.9 62 432-501 269-331 (488)
139 cd06546 GH18_CTS3_chitinase GH 49.1 1.5E+02 0.0032 31.7 10.8 50 555-604 93-146 (256)
140 PF09260 DUF1966: Domain of un 48.0 44 0.00095 30.0 5.5 38 753-793 1-41 (91)
141 PRK14510 putative bifunctional 47.5 24 0.00051 46.2 5.1 53 426-478 743-800 (1221)
142 PLN02635 disproportionating en 46.7 44 0.00095 39.7 6.8 67 411-478 31-104 (538)
143 PLN03236 4-alpha-glucanotransf 45.8 34 0.00074 42.1 5.8 54 426-479 80-139 (745)
144 PTZ00445 p36-lilke protein; Pr 45.7 48 0.001 34.5 6.1 62 430-494 30-96 (219)
145 cd02874 GH18_CFLE_spore_hydrol 45.1 59 0.0013 35.6 7.2 31 554-584 83-113 (313)
146 PRK08208 coproporphyrinogen II 44.9 32 0.00069 39.7 5.3 64 432-503 141-205 (430)
147 PRK06256 biotin synthase; Vali 44.9 29 0.00062 38.5 4.8 60 432-500 152-211 (336)
148 cd07937 DRE_TIM_PC_TC_5S Pyruv 44.2 2.9E+02 0.0063 29.8 12.2 96 430-599 92-188 (275)
149 TIGR00433 bioB biotin syntheta 44.1 47 0.001 35.8 6.2 60 432-500 123-182 (296)
150 PRK05628 coproporphyrinogen II 44.1 40 0.00086 38.0 5.8 64 432-503 108-172 (375)
151 cd00598 GH18_chitinase-like Th 43.1 92 0.002 31.4 7.9 31 554-584 84-114 (210)
152 PRK10076 pyruvate formate lyas 41.2 95 0.0021 32.3 7.6 66 428-494 144-211 (213)
153 PF01212 Beta_elim_lyase: Beta 41.2 25 0.00055 38.3 3.5 24 474-497 143-166 (290)
154 COG2873 MET17 O-acetylhomoseri 41.0 48 0.001 37.3 5.5 60 424-499 111-187 (426)
155 PRK05660 HemN family oxidoredu 40.7 45 0.00098 37.7 5.6 64 432-503 107-171 (378)
156 PLN03236 4-alpha-glucanotransf 40.6 54 0.0012 40.4 6.4 24 476-499 274-297 (745)
157 PRK13210 putative L-xylulose 5 39.8 56 0.0012 34.9 5.9 54 430-494 17-70 (284)
158 PRK15447 putative protease; Pr 39.8 78 0.0017 34.7 7.1 57 417-494 10-66 (301)
159 smart00052 EAL Putative diguan 39.7 32 0.0007 35.3 3.9 74 427-501 131-215 (241)
160 KOG2499 Beta-N-acetylhexosamin 38.9 1.2E+02 0.0027 35.1 8.4 30 474-503 248-278 (542)
161 PRK13347 coproporphyrinogen II 37.9 50 0.0011 38.4 5.5 63 432-502 152-215 (453)
162 cd05014 SIS_Kpsf KpsF-like pro 37.8 88 0.0019 28.9 6.3 59 436-494 20-79 (128)
163 cd04747 OYE_like_5_FMN Old yel 37.4 3E+02 0.0066 31.0 11.4 29 475-505 77-105 (361)
164 COG4943 Predicted signal trans 37.4 34 0.00074 39.6 3.8 68 408-498 413-480 (524)
165 cd02931 ER_like_FMN Enoate red 37.4 3.2E+02 0.0069 31.1 11.7 29 475-505 82-111 (382)
166 PRK01060 endonuclease IV; Prov 37.3 74 0.0016 33.9 6.4 52 429-492 12-63 (281)
167 PRK08446 coproporphyrinogen II 36.9 62 0.0013 36.2 5.9 63 432-502 98-161 (350)
168 KOG0496 Beta-galactosidase [Ca 36.7 65 0.0014 38.7 6.1 60 431-498 51-110 (649)
169 PF07071 DUF1341: Protein of u 36.4 87 0.0019 32.3 6.1 44 431-492 137-180 (218)
170 PRK13561 putative diguanylate 36.1 55 0.0012 39.6 5.7 71 426-500 531-615 (651)
171 PLN02950 4-alpha-glucanotransf 35.9 74 0.0016 40.3 6.8 24 476-499 461-484 (909)
172 PRK05904 coproporphyrinogen II 35.5 56 0.0012 36.7 5.2 63 432-502 103-166 (353)
173 PF01120 Alpha_L_fucos: Alpha- 35.0 44 0.00095 37.4 4.3 147 431-609 93-246 (346)
174 TIGR03356 BGL beta-galactosida 34.9 79 0.0017 36.5 6.4 63 428-497 53-115 (427)
175 PRK10060 RNase II stability mo 34.9 30 0.00066 42.1 3.2 74 426-500 538-622 (663)
176 cd02803 OYE_like_FMN_family Ol 34.8 1.4E+02 0.0031 32.6 8.3 60 438-505 42-104 (327)
177 TIGR00538 hemN oxygen-independ 34.7 62 0.0014 37.6 5.6 64 432-503 151-215 (455)
178 cd02929 TMADH_HD_FMN Trimethyl 34.0 2.8E+02 0.006 31.4 10.5 29 475-505 82-110 (370)
179 TIGR03471 HpnJ hopanoid biosyn 33.7 66 0.0014 37.5 5.7 60 432-499 287-346 (472)
180 cd07944 DRE_TIM_HOA_like 4-hyd 33.6 3.8E+02 0.0082 28.7 11.0 103 432-610 85-192 (266)
181 PRK09856 fructoselysine 3-epim 33.3 97 0.0021 32.9 6.5 51 430-493 14-64 (275)
182 COG0041 PurE Phosphoribosylcar 33.2 1.2E+02 0.0027 29.9 6.3 52 426-496 13-64 (162)
183 cd04735 OYE_like_4_FMN Old yel 33.2 2.2E+02 0.0048 31.9 9.5 29 475-505 77-105 (353)
184 PF01373 Glyco_hydro_14: Glyco 32.3 46 0.001 37.8 3.8 67 425-504 12-81 (402)
185 cd04733 OYE_like_2_FMN Old yel 32.3 3.8E+02 0.0082 29.8 11.1 29 475-505 81-109 (338)
186 PRK09249 coproporphyrinogen II 32.1 83 0.0018 36.5 6.1 64 432-503 151-215 (453)
187 TIGR01211 ELP3 histone acetylt 31.7 73 0.0016 37.8 5.5 63 432-502 206-268 (522)
188 cd01335 Radical_SAM Radical SA 31.4 67 0.0014 31.2 4.5 63 432-501 88-150 (204)
189 COG2342 Predicted extracellula 31.4 6.2E+02 0.014 27.6 11.7 123 428-586 29-151 (300)
190 PF10438 Cyc-maltodext_C: Cycl 31.3 77 0.0017 27.6 4.2 26 755-780 6-33 (78)
191 cd00287 ribokinase_pfkB_like r 30.4 76 0.0017 31.3 4.8 55 432-499 40-94 (196)
192 PRK07379 coproporphyrinogen II 30.3 78 0.0017 36.1 5.4 63 432-502 115-178 (400)
193 cd07943 DRE_TIM_HOA 4-hydroxy- 30.0 5.9E+02 0.013 27.1 11.8 38 560-598 141-179 (263)
194 PLN02389 biotin synthase 29.6 1.1E+02 0.0025 34.7 6.4 60 432-500 178-237 (379)
195 cd03412 CbiK_N Anaerobic cobal 29.5 70 0.0015 30.3 4.1 59 429-487 56-125 (127)
196 PRK08599 coproporphyrinogen II 29.3 92 0.002 35.1 5.7 64 432-503 100-164 (377)
197 PLN02803 beta-amylase 29.2 1.4E+02 0.0031 35.2 7.0 63 429-504 107-172 (548)
198 PRK08195 4-hyroxy-2-oxovalerat 29.0 4.4E+02 0.0094 29.4 10.8 102 433-610 92-198 (337)
199 cd04734 OYE_like_3_FMN Old yel 28.6 7.7E+02 0.017 27.5 12.8 67 431-505 35-104 (343)
200 PF03714 PUD: Bacterial pullan 28.6 1.1E+02 0.0024 27.8 5.0 44 254-301 39-82 (103)
201 KOG4175 Tryptophan synthase al 28.5 1.2E+02 0.0027 31.2 5.6 70 424-501 75-160 (268)
202 PRK09997 hydroxypyruvate isome 28.5 1.4E+02 0.0031 31.4 6.7 20 431-450 17-36 (258)
203 COG2200 Rtn c-di-GMP phosphodi 28.0 85 0.0019 33.4 4.9 69 426-500 133-217 (256)
204 cd00609 AAT_like Aspartate ami 27.9 1E+02 0.0023 33.2 5.7 54 433-500 123-176 (350)
205 PRK06294 coproporphyrinogen II 27.5 97 0.0021 35.0 5.5 64 432-503 103-167 (370)
206 COG0826 Collagenase and relate 27.3 1.6E+02 0.0035 33.1 7.0 57 425-496 13-69 (347)
207 TIGR03586 PseI pseudaminic aci 26.9 1.5E+02 0.0033 32.9 6.7 71 424-494 12-95 (327)
208 cd04724 Tryptophan_synthase_al 26.9 1.2E+02 0.0025 32.1 5.6 49 430-500 92-140 (242)
209 TIGR03581 EF_0839 conserved hy 26.7 1.2E+02 0.0026 31.7 5.2 44 430-491 136-179 (236)
210 PRK12928 lipoyl synthase; Prov 26.7 2.2E+02 0.0047 31.1 7.8 67 425-499 215-281 (290)
211 COG0821 gcpE 1-hydroxy-2-methy 26.6 1.7E+02 0.0036 32.6 6.7 84 409-495 19-129 (361)
212 TIGR00542 hxl6Piso_put hexulos 26.5 1.2E+02 0.0026 32.4 5.8 53 430-493 17-69 (279)
213 PRK10933 trehalose-6-phosphate 26.5 58 0.0013 38.9 3.5 25 424-448 76-100 (551)
214 PF07555 NAGidase: beta-N-acet 25.7 6.9E+02 0.015 27.6 11.4 97 428-580 14-110 (306)
215 cd01948 EAL EAL domain. This d 25.6 61 0.0013 33.2 3.2 75 427-502 130-215 (240)
216 PLN02801 beta-amylase 25.5 1.7E+02 0.0037 34.3 6.9 65 427-504 35-102 (517)
217 TIGR02109 PQQ_syn_pqqE coenzym 25.2 2.6E+02 0.0057 31.0 8.4 61 432-499 95-155 (358)
218 COG1306 Uncharacterized conser 25.2 3E+02 0.0066 30.1 8.1 140 427-584 75-219 (400)
219 TIGR02666 moaA molybdenum cofa 24.9 1.6E+02 0.0036 32.4 6.6 60 432-498 102-162 (334)
220 PRK11059 regulatory protein Cs 24.5 85 0.0018 38.1 4.6 75 426-501 530-615 (640)
221 PRK08114 cystathionine beta-ly 24.4 76 0.0016 36.3 3.9 64 436-499 120-189 (395)
222 PRK13125 trpA tryptophan synth 24.3 1.5E+02 0.0033 31.3 5.9 52 429-499 88-139 (244)
223 COG0520 csdA Selenocysteine ly 24.3 67 0.0015 36.8 3.4 62 435-497 129-200 (405)
224 TIGR00612 ispG_gcpE 1-hydroxy- 24.2 1.5E+02 0.0032 33.1 5.7 83 409-494 17-126 (346)
225 PRK06582 coproporphyrinogen II 24.1 1.2E+02 0.0027 34.4 5.6 64 432-503 111-174 (390)
226 TIGR00262 trpA tryptophan synt 23.9 1.8E+02 0.0038 31.2 6.3 49 430-500 103-151 (256)
227 PF10413 Rhodopsin_N: Amino te 23.9 38 0.00083 24.7 0.8 14 291-304 4-17 (36)
228 PRK01278 argD acetylornithine 23.9 1.8E+02 0.0039 32.6 6.8 59 427-502 164-222 (389)
229 smart00729 Elp3 Elongator prot 23.8 1.5E+02 0.0033 29.2 5.6 62 432-501 100-162 (216)
230 PRK09936 hypothetical protein; 23.7 1.8E+02 0.0039 31.8 6.2 58 428-499 37-95 (296)
231 PRK05799 coproporphyrinogen II 23.7 1.3E+02 0.0028 33.8 5.6 64 432-503 99-163 (374)
232 TIGR03217 4OH_2_O_val_ald 4-hy 23.6 6.6E+02 0.014 28.0 11.0 102 433-610 91-197 (333)
233 cd05008 SIS_GlmS_GlmD_1 SIS (S 23.6 1.8E+02 0.0038 26.8 5.6 60 434-494 17-78 (126)
234 TIGR03127 RuMP_HxlB 6-phospho 23.5 2.2E+02 0.0048 28.1 6.7 55 436-494 50-104 (179)
235 PRK05301 pyrroloquinoline quin 23.4 2.7E+02 0.0058 31.3 8.0 60 433-499 105-164 (378)
236 COG1874 LacA Beta-galactosidas 23.1 1.2E+02 0.0026 37.1 5.2 59 429-498 30-90 (673)
237 PRK13384 delta-aminolevulinic 22.9 3.8E+02 0.0083 29.6 8.5 120 428-598 60-181 (322)
238 PRK00164 moaA molybdenum cofac 22.9 1.8E+02 0.0039 32.0 6.4 60 431-498 107-167 (331)
239 PF09081 DUF1921: Domain of un 22.7 2.2E+02 0.0047 22.4 4.7 40 761-800 7-51 (51)
240 PLN02905 beta-amylase 22.7 2.2E+02 0.0047 34.3 7.0 66 426-504 283-351 (702)
241 COG1902 NemA NADH:flavin oxido 22.7 5.8E+02 0.013 28.9 10.4 28 475-504 82-109 (363)
242 TIGR03234 OH-pyruv-isom hydrox 22.6 2.2E+02 0.0047 29.9 6.7 19 431-449 16-34 (254)
243 cd03413 CbiK_C Anaerobic cobal 22.5 76 0.0016 29.0 2.8 28 431-458 44-71 (103)
244 KOG1165 Casein kinase (serine/ 22.5 1.6E+02 0.0036 32.9 5.6 21 705-725 74-95 (449)
245 PF12031 DUF3518: Domain of un 22.4 21 0.00046 37.7 -1.0 43 211-255 100-150 (257)
246 smart00518 AP2Ec AP endonuclea 22.3 2E+02 0.0044 30.4 6.5 53 430-494 11-63 (273)
247 TIGR02456 treS_nterm trehalose 22.3 72 0.0016 37.9 3.3 75 371-449 5-96 (539)
248 PF00682 HMGL-like: HMGL-like 22.1 3.7E+02 0.008 27.9 8.3 103 428-598 66-175 (237)
249 COG1242 Predicted Fe-S oxidore 22.0 3E+02 0.0065 30.0 7.3 55 475-584 167-221 (312)
250 PRK11359 cyclic-di-GMP phospho 21.9 74 0.0016 39.3 3.4 76 426-502 675-761 (799)
251 cd02932 OYE_YqiM_FMN Old yello 21.8 7.8E+02 0.017 27.2 11.2 70 431-505 35-104 (336)
252 PRK09776 putative diguanylate 21.8 1.1E+02 0.0024 39.3 5.0 70 426-501 971-1056(1092)
253 PF13407 Peripla_BP_4: Peripla 21.7 2E+02 0.0044 29.6 6.2 48 425-494 38-85 (257)
254 TIGR00510 lipA lipoate synthas 21.7 3.2E+02 0.0069 30.1 7.9 67 425-499 218-284 (302)
255 PLN00197 beta-amylase; Provisi 21.4 2.4E+02 0.0051 33.5 7.0 65 427-504 125-192 (573)
256 PF01791 DeoC: DeoC/LacD famil 21.4 73 0.0016 33.4 2.8 57 432-500 79-136 (236)
257 smart00733 Mterf Mitochondrial 21.3 77 0.0017 20.9 2.0 17 428-444 15-31 (31)
258 cd05017 SIS_PGI_PMI_1 The memb 21.2 2.7E+02 0.0058 25.6 6.3 67 425-494 8-75 (119)
259 TIGR02006 IscS cysteine desulf 21.0 1.8E+02 0.0039 32.9 6.1 32 467-498 150-181 (402)
260 COG1809 (2R)-phospho-3-sulfola 21.0 2.1E+02 0.0045 30.1 5.7 46 431-494 92-137 (258)
261 PRK10551 phage resistance prot 21.0 1.7E+02 0.0036 34.7 5.9 70 430-500 398-478 (518)
262 PRK05967 cystathionine beta-ly 20.8 1.1E+02 0.0024 34.9 4.3 29 472-500 162-190 (395)
263 PLN02161 beta-amylase 20.7 2.7E+02 0.0058 32.8 7.2 65 427-504 115-182 (531)
264 PRK11829 biofilm formation reg 20.7 1.5E+02 0.0032 35.9 5.7 75 426-501 536-621 (660)
265 PF00155 Aminotran_1_2: Aminot 20.6 1.9E+02 0.004 31.8 6.0 65 425-503 129-195 (363)
266 KOG0257 Kynurenine aminotransf 20.5 85 0.0018 35.7 3.1 78 426-503 101-219 (420)
267 KOG0259 Tyrosine aminotransfer 20.4 2.1E+02 0.0045 32.5 6.0 79 425-503 133-246 (447)
268 cd00945 Aldolase_Class_I Class 20.4 2.6E+02 0.0056 27.6 6.5 59 428-501 64-125 (201)
269 TIGR03235 DNA_S_dndA cysteine 20.3 1.9E+02 0.0041 31.9 5.9 30 468-497 147-176 (353)
270 PRK09057 coproporphyrinogen II 20.3 1.6E+02 0.0034 33.4 5.3 62 433-502 105-166 (380)
271 PF07488 Glyco_hydro_67M: Glyc 20.2 3.7E+02 0.008 29.6 7.7 62 426-499 54-115 (328)
272 cd06450 DOPA_deC_like DOPA dec 20.2 1.7E+02 0.0036 32.0 5.4 29 472-500 161-189 (345)
No 1
>PLN02784 alpha-amylase
Probab=100.00 E-value=3.7e-168 Score=1449.35 Aligned_cols=797 Identities=77% Similarity=1.344 Sum_probs=756.3
Q ss_pred CeEEeecCCCCCCcEEEEEecCCCceEEEeeeeccCCCCCCccCCCCCCCCCCCcccccccccccccccCCCCceeEEEE
Q 003698 1 MFVRLQKGKDEKNWQLSVGCNIPGKWILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKDYAIETPLKKLAEGDVFDQVNI 80 (802)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lhwgv~~~~~~~~~w~~p~~~~~p~gs~~~~~~a~~t~~~~~~~~~~~~~~~~ 80 (802)
|+|||+ ++.+|+|+|+|+||+|++|||||||++.+++|+||++||++||||||+.+|++||||||+++++++.+++|+|
T Consensus 94 ~~v~l~-~~~~g~~kv~v~t~~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~~~~~A~eT~f~~~s~~~~~~~v~i 172 (894)
T PLN02784 94 IYVRLE-EKNEKNWKLSVGCSIPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIAIKDYAIETPLKKSSEGDSFYEVTI 172 (894)
T ss_pred eEEEEE-ccCCCcEEEEEEecCCCCeEEEEeEecCCCCCccccCCCcccCCCCcEEecCeEEeccccccccCCcceeEEE
Confidence 589998 8888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCceeeEEEEEeCCccchhccCCCceeeeccccccCCCcccccccccccccchHHHHHHHhhhccCCCCCccCCC
Q 003698 81 DFDTRSDIAAINFVLKDEETGAWYQHRGRDFKVPLVDYLQHDGNVIGTKSTFGLWPGALGQLSKMILKADTSQSGIQDSS 160 (802)
Q Consensus 81 ~~~~~~~~~~~~fvl~~~~~~~w~~~~g~~f~v~l~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~ 160 (802)
+|+.+++++||+||||+|++|+||||+|+||+|+|+++++++++++++++++.+|||+|++||++++|+|+++++.+++.
T Consensus 173 el~l~~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 252 (894)
T PLN02784 173 DLDPNSSIAAINFVLKDEETGAWYQHKGRDFKVPLVDDLPDGGNNVGAKKGFGIWPGALGQLSNILLKDEGSPSKEQDKS 252 (894)
T ss_pred EEeeCCceeeEEEEEEeCCCCchhhcCCccEEEecccccccccceeehhhhcCcCcCccccccchhccCCCCCcccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhhhhccccccCceeEEEecceEEEEEeeCCCCCceEEEEEcCCCCCeEEEeeeecCCCCCcccCCCCCCC
Q 003698 161 SESCELKQENKHLEGFYEELPIVKEIIIENTVSVSVRKCPETAKTLLNLETDLTGDVVVHWGVCRDDSKNWEIPAEPYPP 240 (802)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~t~~~~~~~lHWgv~~~~~~~W~~pp~~~~p 240 (802)
+.+.++.++.+++++|||++||.|.++++++|+|+|++|++++|++|+|+||+|++|||||||||++++||++||+++||
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~v~v~~~~~~~k~~v~v~td~~~~vvlHWgV~k~~~~eW~~Pp~~~~P 332 (894)
T PLN02784 253 SSELDSAAERKGLKGFYEEMPIVKRVAVDNSVTVTVRKCPETAKNLVYLETDLPGDVVVHWGVCKDGAKTWEIPPEPHPP 332 (894)
T ss_pred ccccccccccccchhhhhccceeeEEEecceEEEEEecCCCCCceEEEEEcCCCCCEEEEeEeccCCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeccccccccccccCCCCcceeeEeecCceeeeEEEEEcCcccccccCCCceeEeCCCCCCCCc---chhhhcccCC
Q 003698 241 ETIVFKNKALRTLLQPKEGGKGCSRLFTVDEEFAGFLFVLKLNENTWLKCMENDFYIPLTSSSCLPA---ESVQEMLIPG 317 (802)
Q Consensus 241 ~~~~~~~~a~~T~~~~~~~~~~~~~~~~~~~~~~~~~Fvl~~~~~~W~k~~g~df~v~~~~~~~~~~---~~~~~~~~~~ 317 (802)
+||++++|||||||++++++.+++++|+||+++.||+||||+++|+||||||+||||||+.+++.++ +.|+| +
T Consensus 333 ~~sv~~~kA~eT~~~~~~~~~~~~~~~~ld~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl~~~~~~~~~~~~~~~~----~ 408 (894)
T PLN02784 333 ETSLFKNKALQTMLQQKDDGNGSSGLFSLDGELEGLLFVLKLNEGTWLRCNGNDFYVPLLTSSSLPTQTEQGQSE----G 408 (894)
T ss_pred CcceecccccccccccccCCCcceEEEecCCCeeEEEEEEECCCCchhhcCCccEEEeCCchhcccccccccccc----c
Confidence 9999999999999999999999999999999999999999997799999999999999999988888 33444 4
Q ss_pred CCcccccccchhhhhHhHHHhhhhcccCCccchhhcccccccchhhhHHhhhhhhhhhhhccccccCCCccccccccc-C
Q 003698 318 KAEEATQEVSQTAYTAGIIKEIRNLVSDFSSDISRKTKSKEAQKSILLEIEKLAAEAYSIFRTTAPTFFEEAAVELEE-S 396 (802)
Q Consensus 318 ~~~~~~~e~~~~~y~~~~~~~~r~l~~~~~~~~~~~~~~~~~q~t~~~~~~~~~av~YqIf~drf~~~~~~~~~~~~~-~ 396 (802)
+..+..+|+|+++|++++|++||+++.|+++++.++++.+..|.+++++++++.|.+|.||+...+...+....+.+. .
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (894)
T PLN02784 409 KTAKTNKEVSKSAYTDGIIGEIRNLVIDISSEKGQKTKTKELQESILQEIEKLAAEAYSIFRSTIPTFSEESVLEAERIQ 488 (894)
T ss_pred ccccccccccccccccchhhhhHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhhhhheeeccCCCCcChhhhhcchhhc
Confidence 466888999999999999999999999999999999999999999999999999999999999999999888877663 6
Q ss_pred CCCCCCCCCCCCcceeEEeeeeecCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHH
Q 003698 397 KPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNID 476 (802)
Q Consensus 397 ~~~~~~~~~~~~~y~~~~~~F~Wd~~~~GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~e 476 (802)
+|+..++.++..+|++++|+|+|+++.+|.++++|+++||||++||||+|||+|++++.++|||++.|||.+|++|||.+
T Consensus 489 ~~~~~~~~~~~~~~eVmlQgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ 568 (894)
T PLN02784 489 KPPIKICSGTGSGFEILCQGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTID 568 (894)
T ss_pred CCcccccccccCCceEEEEeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHH
Confidence 78888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCCh
Q 003698 477 ELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQD 556 (802)
Q Consensus 477 dfk~LV~~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np 556 (802)
||++||++||++||+||+|+|+||++..+...++.|+.|.+..+|.+.....+++.|.+.++++++.+|..+||||+.||
T Consensus 569 ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~np 648 (894)
T PLN02784 569 ELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQD 648 (894)
T ss_pred HHHHHHHHHHHCCCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCH
Confidence 99999999999999999999999999877666778888888888988777777778888888888888999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEecccccccchhHHHHHHhcCCcEEEEeecCCCccccccCCCCchHHHHHHHHHHhhc
Q 003698 557 FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAA 636 (802)
Q Consensus 557 ~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~~~~p~~liGE~w~~~~~l~g~mny~~~~~~~~i~~~~~~~ 636 (802)
+||++|.+|++||++++||||||||+|++++..|+++++++.+|.|+|||+|++.+|..++|+|+++.+++.+.+|+...
T Consensus 649 eVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkeyv~a~kp~F~VGEyWd~~~~~~g~~~Ynqd~~rq~l~dwi~~t 728 (894)
T PLN02784 649 FVRKDLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDYMEASEPYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINAT 728 (894)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHHHhccCCcEEEEEeccccccccCccccCchhHHHHHHHHHHhC
Confidence 99999999999999899999999999999999999999999988899999999987777899999999999999999988
Q ss_pred CCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccCCCCCcCcCCCCCchHHHHHHHHHHhCCC
Q 003698 637 SGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPG 716 (802)
Q Consensus 637 ~~~~~~fdf~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~P~~~vnfl~nHDt~R~~~~~~~~~~~~klA~allltlpG 716 (802)
++..++|||++++.|++++..++.|++.+..++.+++.+.+|..+|+|++||||.+.++.+.++..+..+|||++||+||
T Consensus 729 gg~~saFDfplk~~L~~A~~~~e~wrL~d~~g~~~glv~~~P~~AVTFVDNHDTg~~Q~~w~~p~~k~~~AYAyILthpG 808 (894)
T PLN02784 729 NGTAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEGKEMQGYAYILTHPG 808 (894)
T ss_pred CCceeeechhHHHHHHHHHhccchhhhhhccCCCCCeeccccCceEEEecCCCCCCCcccCCCCccchhhHHHHHHcCCC
Confidence 88889999999999999998888999988877788999999999999999999999888887788888999999999999
Q ss_pred eeeEeCCchhHHHHHHHHHHHHHHHhCccccCCCeeEEeeCCCEEEEEECCEEEEEEeCCCCCCCCCCCCeEEEEcCCCe
Q 003698 717 TPSVFYDHIFSHYRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWSFVTEGRDY 796 (802)
Q Consensus 717 iP~IYyGdE~~Wl~~~~~~Li~lRk~~~al~~G~~~~l~~~~~v~a~~r~~~~lvvinn~~~~~~~~~~~~~~~~~g~~~ 796 (802)
+|||||||.|+.+.+.|++||.+||+.-..++..++++.++.++|+...+++++|.|++.+..|++++++|++++.|++|
T Consensus 809 ~PcVFy~h~y~~~~~~I~~Li~iRk~~gI~~~S~v~i~~a~~~~Y~a~i~~k~~~kiG~~~~~p~~~~~~~~~~~sG~~y 888 (894)
T PLN02784 809 TPAVFYDHIFSHYHPEIASLISLRNRQKIHCRSEVKITKAERDVYAAIIDEKVAMKIGPGHYEPPNGPQNWSVALEGQDY 888 (894)
T ss_pred cceEEehhhhhhhHHHHHHHHHHHHHcCCCCCCceeEEEecCCcEEEEeCCeeEEEECCcccCCCCCCCceEEEEecCCe
Confidence 99999999985478889999999999999999999999999999999999999999999999875566789999999999
Q ss_pred EEEecC
Q 003698 797 KVWEAA 802 (802)
Q Consensus 797 ~vw~~~ 802 (802)
+||++|
T Consensus 889 avW~k~ 894 (894)
T PLN02784 889 KVWETS 894 (894)
T ss_pred EEEeCC
Confidence 999986
No 2
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=3.5e-71 Score=621.22 Aligned_cols=391 Identities=46% Similarity=0.946 Sum_probs=333.5
Q ss_pred ceeEEeeeeecC-CCCCCCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccC-CCCCCHHHHHHHHHHHHH
Q 003698 410 FEILCQGFNWES-HKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-SRYGNIDELKDVVNKFHD 487 (802)
Q Consensus 410 y~~~~~~F~Wd~-~~~GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~ID-p~~Gt~edfk~LV~~aH~ 487 (802)
.++++|+|.|++ +..||+++||++|||||++||||+|||+|++++.++|||++.|||+|| ++|||.+||++||++||+
T Consensus 24 ~~v~~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~ 103 (428)
T PLN00196 24 GQVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHG 103 (428)
T ss_pred CCEEEEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHH
Confidence 368999999998 456899999999999999999999999999999999999999999999 599999999999999999
Q ss_pred cCCEEEEEeccCcccccCCCCCCCCccCCC-----CCCCCCCcccCCCCCC-CCCCCCCCCCCCCCCCcccCCChHHHHH
Q 003698 488 VGMKILGDVVLNHRCAHYQNQNGVWNIFGG-----RLNWDDRAVVADDPHF-QGRGNKSSGDNFHAAPNIDHSQDFVRKD 561 (802)
Q Consensus 488 ~GIkVILD~V~NHt~~~~~~~~g~~~~f~g-----~~~w~~~~~~~~~~~f-~~~~~~~~~~~~~~lpdln~~np~Vr~~ 561 (802)
+||+||+|+|+||++.++....+.|..|.+ ..+|+......+...| .+.+++.+++++.++||||++||+|+++
T Consensus 104 ~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~ 183 (428)
T PLN00196 104 KGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRE 183 (428)
T ss_pred CCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHH
Confidence 999999999999999888655454544432 2455433332222223 2345566778889999999999999999
Q ss_pred HHHHHHHHHhhcCCceEEecccccccchhHHHHHHhcCCcEEEEeecCCCccc-cccCCCCchHHHHHHHHHHhhcCCC-
Q 003698 562 IKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYT-YGEMDHNQDAHRQRIIDWINAASGT- 639 (802)
Q Consensus 562 i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~~~~p~~liGE~w~~~~~l-~g~mny~~~~~~~~i~~~~~~~~~~- 639 (802)
|+++++||++++||||||+|+|+|++..|+++++++.+|.|+|||+|++.+|. .+...|.++.+++.+.+|+...++.
T Consensus 184 l~~~~~wl~~~~GiDG~RlD~ak~~~~~f~~~~v~~~~p~f~VGE~W~~~~~~~~~~~~~~~~~~r~~l~~~l~~~g~~~ 263 (428)
T PLN00196 184 LIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEYDQNAHRQELVNWVDRVGGAA 263 (428)
T ss_pred HHHHHHHHhhCCCCCEEEeehhhhCCHHHHHHHHHccCCcEEEEEEeccccccccCCccccchhhHHHHHHHHHhcCCcc
Confidence 99999999888999999999999999999999998888889999999986553 5668888888889999999866543
Q ss_pred --cccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccCCCCCcCcCCCCCchHHHHHHHHHHhCCCe
Q 003698 640 --AGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGT 717 (802)
Q Consensus 640 --~~~fdf~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~P~~~vnfl~nHDt~R~~~~~~~~~~~~klA~allltlpGi 717 (802)
.+.|||++...+..++. ++.+++.+..+...++...+|..+|||++||||.|+.+.+.++..+.++|+|++||+||+
T Consensus 264 ~~~~~fDF~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~~~~~~~~~~~lAyA~iLT~pG~ 342 (428)
T PLN00196 264 SPATVFDFTTKGILNVAVE-GELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQHMWPFPSDKVMQGYAYILTHPGN 342 (428)
T ss_pred CcceeecccchHHHHHHhc-CCchhhhhhcccCcchhhcChhhceeeccCCCCccccccCCCccchHHHHHHHHHcCCCc
Confidence 45899999876666654 356677666555566778899999999999999999998877778889999999999999
Q ss_pred eeEeCCchhHH-HHHHHHHHHHHHHhCccccCCCeeEEeeCCCEEEEEECCEEEEEEeCCCCCCCCCCCCeEEEEcCCCe
Q 003698 718 PSVFYDHIFSH-YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWSFVTEGRDY 796 (802)
Q Consensus 718 P~IYyGdE~~W-l~~~~~~Li~lRk~~~al~~G~~~~l~~~~~v~a~~r~~~~lvvinn~~~~~~~~~~~~~~~~~g~~~ 796 (802)
||||||+-|+| +.+.|++|+++||++++++.|+++++.+++++|+++|+++++|+||+.-....-.+.+|++++.|.+|
T Consensus 343 P~IyYg~~~~~~~~~~i~~Li~~Rk~~~~~~~g~~~~~~a~~d~yv~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~ 422 (428)
T PLN00196 343 PCIFYDHFFDWGLKEEIAALVSIRNRNGITPTSELRIMEADADLYLAEIDGKVIVKIGSRYDVSHLIPEGFQVVAHGNGY 422 (428)
T ss_pred ceEeeCCCcCccHHHHHHHHHHHHHhCCCcCCccEEEEEecCCEEEEEECCEEEEEECCCCCccccCcccceEEEecCCe
Confidence 99999999999 99999999999999999999999999999999999999999999999632221112459999999999
Q ss_pred EEEec
Q 003698 797 KVWEA 801 (802)
Q Consensus 797 ~vw~~ 801 (802)
.||++
T Consensus 423 ~~w~~ 427 (428)
T PLN00196 423 AVWEK 427 (428)
T ss_pred EEEec
Confidence 99986
No 3
>PLN02361 alpha-amylase
Probab=100.00 E-value=8.5e-71 Score=611.29 Aligned_cols=386 Identities=52% Similarity=1.062 Sum_probs=343.9
Q ss_pred cceeEEeeeeecCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHc
Q 003698 409 GFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDV 488 (802)
Q Consensus 409 ~y~~~~~~F~Wd~~~~GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~ 488 (802)
+.++++|+|+|+++. +.++++|+++||||++||||+|||+|++++.++|||++.|||.+||+|||.+||++||++||++
T Consensus 10 ~~~v~lQ~F~W~~~~-~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~ 88 (401)
T PLN02361 10 GREILLQAFNWESHK-HDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQY 88 (401)
T ss_pred CCcEEEEEEeccCCc-cHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHc
Confidence 357899999999874 5699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeccCcccccCCCCCCCCccCCCC-CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHH
Q 003698 489 GMKILGDVVLNHRCAHYQNQNGVWNIFGGR-LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLC 567 (802)
Q Consensus 489 GIkVILD~V~NHt~~~~~~~~g~~~~f~g~-~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~ 567 (802)
||+||+|+|+||++.......+.|+.|.+. .+|+...+..+. .+.+++..+..+..+||||++||+||++|+++++
T Consensus 89 gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~---~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~ 165 (401)
T PLN02361 89 NVRAMADIVINHRVGTTQGHGGMYNRYDGIPLPWDEHAVTSCT---GGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLI 165 (401)
T ss_pred CCEEEEEEccccccCCCCCCCCCcccCCCCcCCCCcccccccc---CCCCCccCCCCCccCCccCCCCHHHHHHHHHHHH
Confidence 999999999999977666667777777763 566644322211 1233455667788999999999999999999999
Q ss_pred HHHhhcCCceEEecccccccchhHHHHHHhcCCcEEEEeecCCCccc--cccCCCCchHHHHHHHHHHhhcCCCcccccc
Q 003698 568 WLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYT--YGEMDHNQDAHRQRIIDWINAASGTAGAFDV 645 (802)
Q Consensus 568 ~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~~~~p~~liGE~w~~~~~l--~g~mny~~~~~~~~i~~~~~~~~~~~~~fdf 645 (802)
||++++||||||+|+|++++..|+++++++.+|.|+|||+|++..+. ++.++|+++.+++.+.+|+...++..++|||
T Consensus 166 wl~~~~GiDGfRlDavk~~~~~f~~~~~~~~~p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF 245 (401)
T PLN02361 166 WLRNDVGFQDFRFDFAKGYSAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGGLSAAFDF 245 (401)
T ss_pred HHHhcCCCCEEEEeccccCCHHHHHHHHHhhCCeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCCcceeecH
Confidence 88877999999999999999999999999988889999999885432 4559999999999999999987778899999
Q ss_pred hhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccCCCCCcCcCCCCCchHHHHHHHHHHhCCCeeeEeCCch
Q 003698 646 TTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHI 725 (802)
Q Consensus 646 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~P~~~vnfl~nHDt~R~~~~~~~~~~~~klA~allltlpGiP~IYyGdE 725 (802)
+++..+.+++ .++.+++.+..++.+.+.+.+|..+|+|++||||+|+++.++++..+.++|+|++||+||+||||||+-
T Consensus 246 ~l~~~l~~a~-~~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~~~~~~~~~~~AyA~iLT~pG~P~Vyyg~~ 324 (401)
T PLN02361 246 TTKGILQEAV-KGQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFPSDHIMEGYAYILTHPGIPTVFYDHF 324 (401)
T ss_pred HHHHHHHHHH-hhhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhhccCCchHHHHHHHHHHHCCCCcCeEeeccc
Confidence 9999999998 456888888777667788889999999999999999999888788899999999999999999999999
Q ss_pred hHH---HHHHHHHHHHHHHhCccccCCCeeEEeeCCCEEEEEECCEEEEEEeCCCCCCCCCCCCeEEEEcCCCeEEEec
Q 003698 726 FSH---YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWSFVTEGRDYKVWEA 801 (802)
Q Consensus 726 ~~W---l~~~~~~Li~lRk~~~al~~G~~~~l~~~~~v~a~~r~~~~lvvinn~~~~~~~~~~~~~~~~~g~~~~vw~~ 801 (802)
|+| +.+.|++|+.|||+++++++|+++++.+++++|+...+++++|-+++....| +++ +|++++.|.+|+||++
T Consensus 325 ~~~~~~~~~~I~~Li~lRk~~~~~~~s~~~i~~a~~~~y~a~i~~~~~~k~g~~~~~p-~~~-~~~~~~~g~~~~~w~~ 401 (401)
T PLN02361 325 YDWGGSIHDQIVKLIDIRKRQDIHSRSSIRILEAQSNLYSAIIDEKLCMKIGDGSWCP-SGR-EWTLATSGHRYAVWHK 401 (401)
T ss_pred cCCChHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCeEEEEECCeEEEEecCCCCCC-CCC-CceEEEecCceEEeeC
Confidence 998 9999999999999999999999999999999999999999999999998888 443 5999999999999986
No 4
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=3e-67 Score=616.05 Aligned_cols=372 Identities=17% Similarity=0.229 Sum_probs=277.3
Q ss_pred hhhhhhccccccCCCccccccccc------CCCCCCCCCCCCCcceeEEeeeeecCCCCCCCHHHHHHHHHHHHhcCCCE
Q 003698 372 AEAYSIFRTTAPTFFEEAAVELEE------SKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSV 445 (802)
Q Consensus 372 av~YqIf~drf~~~~~~~~~~~~~------~~~~~~~~~~~~~~y~~~~~~F~Wd~~~~GGdl~GI~~kLdYLk~LGvta 445 (802)
+|+||||||||++|+++++...+. ..+.....+++...+......| +||||+||++||||||+||||+
T Consensus 122 ~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f------~GGDl~GI~~kLdYL~~LGv~~ 195 (598)
T PRK10785 122 QVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTF------YGGDLDGISEKLPYLKKLGVTA 195 (598)
T ss_pred CEEEEechhhhcCCCcccCccCCceeeccCCCcccccCcCCCcccccccccc------cCcCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999877644221 0000001112222112122233 4999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccccCCCCC-------CCCccCCCC
Q 003698 446 IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN-------GVWNIFGGR 518 (802)
Q Consensus 446 I~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~~~-------g~~~~f~g~ 518 (802)
|||+|||+++++|||++.||++|||+|||+++|++||++||++|||||||+|+|||+.+|++++ |.+..-.++
T Consensus 196 I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~sp 275 (598)
T PRK10785 196 LYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSP 275 (598)
T ss_pred EEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999987532 111110110
Q ss_pred -CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHH----HHHHHHhh-cCCceEEeccccccc-----
Q 003698 519 -LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKE----WLCWLRNE-IGYDGWRLDFVRGFW----- 587 (802)
Q Consensus 519 -~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~----~l~~Wi~e-~GIDGfRlD~a~~~~----- 587 (802)
.+|+ .|...+.+.+|+++..||+||++||+|+++|++ ++++|+++ +||||||||+|++++
T Consensus 276 y~dwf---------~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~ 346 (598)
T PRK10785 276 WRDWY---------SFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGA 346 (598)
T ss_pred cceee---------EECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCc
Confidence 1222 223334456777788999999999999999995 89999986 999999999999884
Q ss_pred ---chhHHHHHHh---cCCc-EEEEeecCCC-ccc-----cccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHh
Q 003698 588 ---GGYVKDYLEA---TEPY-FAVGEYWDSL-SYT-----YGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSA 654 (802)
Q Consensus 588 ---~~f~~~~~~~---~~p~-~liGE~w~~~-~~l-----~g~mny~~~~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~ 654 (802)
.+||+++.++ .+|+ ++|||+|.+. .|+ ++.|||.. +...++.|+.............. ..+...
T Consensus 347 ~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~~~l~~~~~d~~mny~~--f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 423 (598)
T PRK10785 347 RNNLQHVAGITQAAKEENPEAYVLGEHFGDARQWLQADVEDAAMNYRG--FAFPLRAFLANTDIAYHPQQIDA-QTCAAW 423 (598)
T ss_pred cccHHHHHHHHHHHHhhCCCeEEEEeccCChhhhccCccccccccchh--hhhHHHHHhhccccccCccCCCH-HHHHHH
Confidence 3688877554 4677 8999999864 343 45588742 34566677653210000000000 001111
Q ss_pred hhchhhhhhhhhcCCCCCCcCCCCC----cceeecccCCCCCcCcCCCCCchHHHHHHHHHHhCCCeeeEeCCchh----
Q 003698 655 LDRCEYWRLSDEKGKPPGVVGWWPS----RAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIF---- 726 (802)
Q Consensus 655 ~~~~~~~~l~~~~~~~~~~~~~~P~----~~vnfl~nHDt~R~~~~~~~~~~~~klA~allltlpGiP~IYyGdE~---- 726 (802)
+ ..+. ..+|. .++|||+|||++|+.+.++.+..+.++|++++||+||+||||||||+
T Consensus 424 l-----~~~~----------~~~~~~~~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ll~t~pGiP~IYYGdE~G~~g 488 (598)
T PRK10785 424 M-----DEYR----------AGLPHQQQLRQFNQLDSHDTARFKTLLGGDKARMPLALVWLFTWPGVPCIYYGDEVGLDG 488 (598)
T ss_pred H-----HHHH----------HhCCHHHHHHhhhccCCCccchhhhhhCCCHHHHHHHHHHHHhCCCCcEEEeeeeccccC
Confidence 0 0000 11222 35799999999999998876778899999999999999999999996
Q ss_pred ----------HH--------HHHHHHHHHHHHHhCccccCCCeeEEeeCCCEEEEEE---CCEEEEEEeCC
Q 003698 727 ----------SH--------YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAII---DEKVAMKLGPG 776 (802)
Q Consensus 727 ----------~W--------l~~~~~~Li~lRk~~~al~~G~~~~l~~~~~v~a~~r---~~~~lvvinn~ 776 (802)
+| ++++||+||+|||++|+|+.|+++.+..++++++|.| ++.++|++|++
T Consensus 489 ~~dp~~R~~m~W~~~~~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~~~~v~af~R~~~~~~vlVviN~s 559 (598)
T PRK10785 489 GNDPFCRKPFPWDEAKQDGALLALYQRMIALRKKSQALRRGGCQVLYAEGNVVVFARVLQQQRVLVAINRG 559 (598)
T ss_pred CCCCCccCCcCCCcccCchHHHHHHHHHHHHHhhCcccccCcEEEEEeCCCEEEEEEECCCCEEEEEEECC
Confidence 36 9999999999999999999999999999899999998 57888999987
No 5
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=7.8e-60 Score=552.78 Aligned_cols=363 Identities=18% Similarity=0.250 Sum_probs=255.9
Q ss_pred hhhhhhccccccCCCcccccccccCCCCCCCCCCCCCcceeEEeeeeecCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCC
Q 003698 372 AEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPP 451 (802)
Q Consensus 372 av~YqIf~drf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~F~Wd~~~~GGdl~GI~~kLdYLk~LGvtaI~L~PI 451 (802)
+++||||||||++|+++++.... +-..+. .....| +||||+||++||||||+||||+|||+||
T Consensus 190 aviYqI~~DRF~nGd~~Nd~~~g------~~~d~~-----~~~~~f------~GGdl~Gi~~kLdyl~~LGv~aIwlsPi 252 (683)
T PRK09505 190 ATVYFVLTDRFENGDPSNDHSYG------RHKDGM-----QEIGTF------HGGDLRGLTEKLDYLQQLGVNALWISSP 252 (683)
T ss_pred CcEEEEehhhhcCCCcccccccC------cCCCCc-----cccCcc------cCCCHHHHHHhhHHHHHcCCCEEEeCcc
Confidence 78899999999999987754310 000000 012234 3999999999999999999999999999
Q ss_pred CCCC---------------CCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccccCC------CCCC
Q 003698 452 TESV---------------SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQ------NQNG 510 (802)
Q Consensus 452 ~es~---------------s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~~~------~~~g 510 (802)
+++. ++|||++.||+.|||+|||++||++||++||++||+||||+|+||++..+. ++..
T Consensus 253 ~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~ 332 (683)
T PRK09505 253 LEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGA 332 (683)
T ss_pred ccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhh
Confidence 9872 789999999999999999999999999999999999999999999996421 1111
Q ss_pred CC--------ccCCCCCCCCCCcccC-----CCCCCCCCCCCCCC----------------------CCCCCCCcccCC-
Q 003698 511 VW--------NIFGGRLNWDDRAVVA-----DDPHFQGRGNKSSG----------------------DNFHAAPNIDHS- 554 (802)
Q Consensus 511 ~~--------~~f~g~~~w~~~~~~~-----~~~~f~~~~~~~~~----------------------~~~~~lpdln~~- 554 (802)
.| .....+.+|.+..... +...|.....+..| .....|||||++
T Consensus 333 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~ 412 (683)
T PRK09505 333 LYLSGDENKKTLGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTES 412 (683)
T ss_pred hhhhccccccccCcccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccC
Confidence 00 0000002222110000 00011100000011 123468888886
Q ss_pred ----------------------ChHHHHHHHHHHHHHHhhcCCceEEecccccccchhHHHHHHhc----------CC--
Q 003698 555 ----------------------QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT----------EP-- 600 (802)
Q Consensus 555 ----------------------np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~~~----------~p-- 600 (802)
||+|+++|++++++|++++||||||+|+|+|++.+||+++.+++ +|
T Consensus 413 ~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~ 492 (683)
T PRK09505 413 TQASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDK 492 (683)
T ss_pred ccccccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45999999999999998899999999999999999998875432 22
Q ss_pred -----c-EEEEeecCCCccccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhch-hhhhhhhhcCCCCCC
Q 003698 601 -----Y-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRC-EYWRLSDEKGKPPGV 673 (802)
Q Consensus 601 -----~-~liGE~w~~~~~l~g~mny~~~~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~-~~~~l~~~~~~~~~~ 673 (802)
. |++||+|..... ...|.. .+++++++|.+...+..++... .+..+..... ..
T Consensus 493 ~~~~~~~~~vGEvw~~~~~---------------~~~y~~--~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~~---~~ 552 (683)
T PRK09505 493 ALDDAPFWMTGEAWGHGVM---------------KSDYYR--HGFDAMINFDYQEQAAKAVDCLAQMDPTYQQMA---EK 552 (683)
T ss_pred ccccCCeEEEEEecCCchh---------------hHHHHh--hcCccccCchHHHHHHHHHHHHHHHHHHHHHHh---hh
Confidence 3 799999975310 112222 3577888888775544332211 1111111110 00
Q ss_pred cCCCCCcceeecccCCCCCcCcCCCCCchHHHHHHHHHHhCCCeeeEeCCchh-------------------HH------
Q 003698 674 VGWWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIF-------------------SH------ 728 (802)
Q Consensus 674 ~~~~P~~~vnfl~nHDt~R~~~~~~~~~~~~klA~allltlpGiP~IYyGdE~-------------------~W------ 728 (802)
. .+..+++|++|||++|+.+... +..+.++|++++||+||+|+||||||+ +|
T Consensus 553 ~--~~~~~l~FLdNHDt~Rf~s~~~-~~~~~klAaall~tlpGiP~IYYGdEiGm~gg~~g~DP~~~~R~~M~W~~~~~~ 629 (683)
T PRK09505 553 L--QDFNVLSYLSSHDTRLFFEGGQ-SYAKQRRAAELLLLAPGAVQIYYGDESARPFGPTGSDPLQGTRSDMNWQEVSGK 629 (683)
T ss_pred c--CccceeecccCCChhhhhhhcC-chHHHHHHHHHHHhCCCCcEEEechhhCccCCCCCCCCcccccccCCccccccc
Confidence 0 1224679999999999988776 337889999999999999999999995 35
Q ss_pred ---HHHHHHHHHHHHHhCccccCCCeeEEeeCCCEEEEEE---CCEEEEEEeC
Q 003698 729 ---YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAII---DEKVAMKLGP 775 (802)
Q Consensus 729 ---l~~~~~~Li~lRk~~~al~~G~~~~l~~~~~v~a~~r---~~~~lvvinn 775 (802)
++++||+|++||+++|+|+.|+++.+. ++++|+|.| +++++|++|.
T Consensus 630 ~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l~-~~~~~aF~R~~~~d~vlVv~~~ 681 (683)
T PRK09505 630 SAALLAHWQKLGQFRARHPAIGAGKQTTLS-LKQYYAFVREHGDDKVMVVWAG 681 (683)
T ss_pred hHHHHHHHHHHHHHHhhCHHhhCCceEEec-cCCEEEEEEEeCCCEEEEEEeC
Confidence 899999999999999999999999874 568999998 4566666653
No 6
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=1.6e-58 Score=531.50 Aligned_cols=348 Identities=27% Similarity=0.468 Sum_probs=264.9
Q ss_pred eeEEeeeeecCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCCCCCC---CCCCCCccCC---------ccCCCCCCHHHH
Q 003698 411 EILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLY---------NLSSRYGNIDEL 478 (802)
Q Consensus 411 ~~~~~~F~Wd~~~~GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~s---~hGYd~~Dy~---------~IDp~~Gt~edf 478 (802)
.+++|+|+|+++..|.+++||++|||||++||||+|||+||+++.+ +|||++.||| .|||+|||++||
T Consensus 4 ~~~~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl 83 (479)
T PRK09441 4 GTMMQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEEL 83 (479)
T ss_pred ceEEEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHH
Confidence 5799999999887677888999999999999999999999999874 6999999999 799999999999
Q ss_pred HHHHHHHHHcCCEEEEEeccCcccccCC--CCC-------CCCccCCCC---CCCCCCccc-----C-----CCCCCCCC
Q 003698 479 KDVVNKFHDVGMKILGDVVLNHRCAHYQ--NQN-------GVWNIFGGR---LNWDDRAVV-----A-----DDPHFQGR 536 (802)
Q Consensus 479 k~LV~~aH~~GIkVILD~V~NHt~~~~~--~~~-------g~~~~f~g~---~~w~~~~~~-----~-----~~~~f~~~ 536 (802)
|+||++||++||+||+|+|+|||+..+. ++. +..+.+... ..|.....+ . ....|.+.
T Consensus 84 ~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (479)
T PRK09441 84 LNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGT 163 (479)
T ss_pred HHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCc
Confidence 9999999999999999999999996432 211 110111000 011100000 0 00001000
Q ss_pred ---------------CCCCCC----------CCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEecccccccchhH
Q 003698 537 ---------------GNKSSG----------DNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYV 591 (802)
Q Consensus 537 ---------------~~~~~~----------~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~ 591 (802)
....+| +.+..|||||++||+|+++|+++++||++++||||||+|+|++++..|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~~f~ 243 (479)
T PRK09441 164 DYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAWFI 243 (479)
T ss_pred ccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCHHHH
Confidence 000111 1345699999999999999999999999779999999999999999999
Q ss_pred HHHHHhc----CCc-EEEEeecCCCccccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhh
Q 003698 592 KDYLEAT----EPY-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDE 666 (802)
Q Consensus 592 ~~~~~~~----~p~-~liGE~w~~~~~l~g~mny~~~~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~~~~~l~~~ 666 (802)
+++++++ .|+ |++||+|.+. ...+..|+.......++|||++...+..++..+...++...
T Consensus 244 ~~~~~~~~~~~~~~~~~vGE~~~~~--------------~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~~~~~~l~~~ 309 (479)
T PRK09441 244 KEWIEHVREVAGKDLFIVGEYWSHD--------------VDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQGRDYDMRNI 309 (479)
T ss_pred HHHHHHHHHhcCCCeEEEEeecCCC--------------hHHHHHHHHhcCCCceEecHHHHHHHHHHHhcCCccchHhh
Confidence 9988764 245 8999999863 23566777654445679999999889888765443344333
Q ss_pred cCCCCCCcCCCCCcceeecccCCCCCcCcCCCCCch-HHHHHHHHHHhCC-CeeeEeCCchhHH--------HHHHHHHH
Q 003698 667 KGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGG-REMQGYAYILTHP-GTPSVFYDHIFSH--------YRQEIEAL 736 (802)
Q Consensus 667 ~~~~~~~~~~~P~~~vnfl~nHDt~R~~~~~~~~~~-~~klA~allltlp-GiP~IYyGdE~~W--------l~~~~~~L 736 (802)
.. .......|..+++|++|||++|+.+....... +.++|++++||+| |+||||||+|+++ ++++|++|
T Consensus 310 ~~--~~~~~~~~~~~~~FldNHD~~R~~~~~~~~~~~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~~~~~~l~~~i~~L 387 (479)
T PRK09441 310 FD--GTLVEADPFHAVTFVDNHDTQPGQALESPVEPWFKPLAYALILLREEGYPCVFYGDYYGASGYYIDMPFKEKLDKL 387 (479)
T ss_pred hC--cchhhcCcccceeeeccccCCCcccccccccccchHHHHHHHHhCCCCceeeEeccccCCCCCcccchHHHHHHHH
Confidence 21 11223356678999999999999886542222 3589999999999 9999999999976 89999999
Q ss_pred HHHHHhCccccCCCeeEEeeCCCEEEEEE-C----CEEEEEEeCCC
Q 003698 737 LSVRKRNKIHCRSRVEIVKAERDVYAAII-D----EKVAMKLGPGH 777 (802)
Q Consensus 737 i~lRk~~~al~~G~~~~l~~~~~v~a~~r-~----~~~lvvinn~~ 777 (802)
|+|||++ +.|++..+..++++++|.| + +.++|++||++
T Consensus 388 i~lRk~~---~~G~~~~~~~~~~~~~~~R~~~~~~~~vvvvinn~~ 430 (479)
T PRK09441 388 LLARKNF---AYGEQTDYFDHPNCIGWTRSGDEENPGLAVVISNGD 430 (479)
T ss_pred HHHHHHh---CCCCeeEeecCCCEEEEEEecCCCCccEEEEEECCC
Confidence 9999985 4799999999999999998 2 35888898864
No 7
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=3e-55 Score=510.50 Aligned_cols=333 Identities=21% Similarity=0.282 Sum_probs=243.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEeCCCCCCCC-CCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 003698 425 GRWYMELKEKATELSSLGFSVIWLPPPTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 503 (802)
Q Consensus 425 GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~s-~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~ 503 (802)
+|||+||+++||||++||||+|||+|||++++ +|||++.||++|||+|||+++|++||++||++||+||||+|+||++.
T Consensus 24 ~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~s~ 103 (539)
T TIGR02456 24 IGDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNHTSD 103 (539)
T ss_pred ccCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCcCCC
Confidence 59999999999999999999999999999985 79999999999999999999999999999999999999999999999
Q ss_pred cCCCCC----CCCccCCCCCCCCCCcccCCCC--CCCC-----------CCCCCCCCCCCCCCcccCCChHHHHHHHHHH
Q 003698 504 HYQNQN----GVWNIFGGRLNWDDRAVVADDP--HFQG-----------RGNKSSGDNFHAAPNIDHSQDFVRKDIKEWL 566 (802)
Q Consensus 504 ~~~~~~----g~~~~f~g~~~w~~~~~~~~~~--~f~~-----------~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l 566 (802)
+|+++. +..+++.+++.|........++ .|.+ .+.+....++..+|+||++||+||++|++++
T Consensus 104 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~vr~~l~~~~ 183 (539)
T TIGR02456 104 QHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHDAVHDVM 183 (539)
T ss_pred CCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccCCCCccCCCCHHHHHHHHHHH
Confidence 987532 1112222222222111000000 0100 0111111235789999999999999999999
Q ss_pred HHHHhhcCCceEEeccccccc-------------chhHHHHHHhc---CCc-EEEEeecCCCccccccCCCCchHHHHHH
Q 003698 567 CWLRNEIGYDGWRLDFVRGFW-------------GGYVKDYLEAT---EPY-FAVGEYWDSLSYTYGEMDHNQDAHRQRI 629 (802)
Q Consensus 567 ~~Wi~e~GIDGfRlD~a~~~~-------------~~f~~~~~~~~---~p~-~liGE~w~~~~~l~g~mny~~~~~~~~i 629 (802)
++|+ ++||||||||+++++. .+||+++.+.+ +|+ +++||++.. ...+
T Consensus 184 ~~w~-~~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p~~~~iaE~~~~---------------~~~~ 247 (539)
T TIGR02456 184 RFWL-DLGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYPGRMLLAEANQW---------------PEEV 247 (539)
T ss_pred HHHH-HcCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCCCeEEEEEeCCC---------------HHHH
Confidence 9999 6999999999998762 35887765543 577 899998543 1334
Q ss_pred HHHHhh-cC-CCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCC--CcceeecccCCCCC-------------
Q 003698 630 IDWINA-AS-GTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWP--SRAVTFIENHDTGS------------- 692 (802)
Q Consensus 630 ~~~~~~-~~-~~~~~fdf~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~P--~~~vnfl~nHDt~R------------- 692 (802)
..|+.. .+ +++++|+|++...+...+...+...+...+... ..+| ...++|++|||+.|
T Consensus 248 ~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l~~~l~~~----~~~~~~~~~~~fl~nHD~~~~~~~~~~~~~~~~ 323 (539)
T TIGR02456 248 VAYFGDEGDPECHMAFNFPVMPRIFMALRREDRSPIIDILKET----PDIPDSCQWCIFLRNHDELTLEMVTDEERDFMY 323 (539)
T ss_pred HHhhCCCCCCeeeeEEChhhhhhhhcccccCCHHHHHHHHHHh----hhccCCCceeeecCCCCccCccccChhhhhhhh
Confidence 556532 12 577889998865554433333222222211110 0122 24578999999954
Q ss_pred ------------------cCcCCCCCchHHHHHHHHHHhCCCeeeEeCCchhH------------------H--------
Q 003698 693 ------------------TQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIFS------------------H-------- 728 (802)
Q Consensus 693 ------------------~~~~~~~~~~~~klA~allltlpGiP~IYyGdE~~------------------W-------- 728 (802)
+.+.++.+..+.++|++++||+||+|+||||+|++ |
T Consensus 324 ~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~~~~~~~~~~~R~pm~W~~~~~~gf 403 (539)
T TIGR02456 324 AAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIGMGDNIWLGDRNGVRTPMQWSPDRNAGF 403 (539)
T ss_pred hhccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhcCcCCCccCCCcCccCCcCcCCCCCCCC
Confidence 44444445567899999999999999999999962 2
Q ss_pred ----------------------------------HHHHHHHHHHHHHhCccccCCCeeEEeeC-CCEEEEEE---CCEEE
Q 003698 729 ----------------------------------YRQEIEALLSVRKRNKIHCRSRVEIVKAE-RDVYAAII---DEKVA 770 (802)
Q Consensus 729 ----------------------------------l~~~~~~Li~lRk~~~al~~G~~~~l~~~-~~v~a~~r---~~~~l 770 (802)
++++||+||+|||++++|..|+++.+..+ +++++|.| ++.++
T Consensus 404 s~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~~aL~~G~~~~l~~~~~~v~~f~R~~~~~~vl 483 (539)
T TIGR02456 404 SSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAFGRGSLTFLPTGNRRVLAFLREYEGERVL 483 (539)
T ss_pred CCCCCcccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcCcccccCceEEEecCCCCEEEEEEEcCCcEEE
Confidence 47889999999999999999999998875 47999988 56777
Q ss_pred EEEeCCC
Q 003698 771 MKLGPGH 777 (802)
Q Consensus 771 vvinn~~ 777 (802)
|++|.+.
T Consensus 484 Vv~N~s~ 490 (539)
T TIGR02456 484 CVFNFSR 490 (539)
T ss_pred EEEeCCC
Confidence 7777764
No 8
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=1e-53 Score=497.01 Aligned_cols=336 Identities=18% Similarity=0.236 Sum_probs=235.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCC-CCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 003698 425 GRWYMELKEKATELSSLGFSVIWLPPPTESVSP-EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 503 (802)
Q Consensus 425 GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~-hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~ 503 (802)
.|||+||+++||||++||||+|||+|||+++++ |||++.||+.|||+|||+++|++||++||++||+||||+|+|||+.
T Consensus 23 ~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~~ 102 (543)
T TIGR02403 23 TGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTST 102 (543)
T ss_pred ccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECcccccc
Confidence 489999999999999999999999999999854 7999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC---CccCCCCCCCCCCc---ccCCCCCCCCC--------CCCCCCCCCCCCCcccCCChHHHHHHHHHHHHH
Q 003698 504 HYQNQNGV---WNIFGGRLNWDDRA---VVADDPHFQGR--------GNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWL 569 (802)
Q Consensus 504 ~~~~~~g~---~~~f~g~~~w~~~~---~~~~~~~f~~~--------~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~W 569 (802)
+|+++... -++|..++.|.+.. .......|.+. +.+....+...+||||++||+|+++|.++++||
T Consensus 103 ~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~~~W 182 (543)
T TIGR02403 103 EHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDVVNFW 182 (543)
T ss_pred chHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHHHHHH
Confidence 98753321 12222222232211 00001112111 111112233679999999999999999999999
Q ss_pred HhhcCCceEEecccccccc-----------------------hhHHHHHHhc--CCc-EEEEeecCCCccccccCCCCch
Q 003698 570 RNEIGYDGWRLDFVRGFWG-----------------------GYVKDYLEAT--EPY-FAVGEYWDSLSYTYGEMDHNQD 623 (802)
Q Consensus 570 i~e~GIDGfRlD~a~~~~~-----------------------~f~~~~~~~~--~p~-~liGE~w~~~~~l~g~mny~~~ 623 (802)
+ ++||||||||+|++++. +|++++.+.+ +|+ |+|||+|....
T Consensus 183 ~-~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~lvgE~~~~~~----------- 250 (543)
T TIGR02403 183 R-DKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFGDNDSVTVGEMSSTTI----------- 250 (543)
T ss_pred H-HcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhccCCeEEEEEeCCCCH-----------
Confidence 9 68999999999998852 4777765544 566 89999997521
Q ss_pred HHHHHHHHHHhh-cCCCcccccchhhHHHHHhhhc-------hhhhhhhhhcCC-CCCCcCCCCCcceeecccCCCCCcC
Q 003698 624 AHRQRIIDWINA-ASGTAGAFDVTTKGILHSALDR-------CEYWRLSDEKGK-PPGVVGWWPSRAVTFIENHDTGSTQ 694 (802)
Q Consensus 624 ~~~~~i~~~~~~-~~~~~~~fdf~l~~~l~~~~~~-------~~~~~l~~~~~~-~~~~~~~~P~~~vnfl~nHDt~R~~ 694 (802)
..+..|... ...+++.|+|... ....... .....+...+.. ..... ......++|++|||++|+.
T Consensus 251 ---~~~~~y~~~~~~~~d~~~nf~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~fl~NHD~~R~~ 324 (543)
T TIGR02403 251 ---ENCIRYSNPENKELSMVFTFHHL--KVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQ-AGGGWNALFWNNHDQPRAV 324 (543)
T ss_pred ---HHHHhhhCCCCCeeCeEEChhhh--hchhccccccccCCCCHHHHHHHHHHHHHhcc-ccCcceeeecCCCChhhHH
Confidence 122333321 1234455555421 1111000 000111110000 00000 0012346799999999999
Q ss_pred cCCCCCc----hHHHHHHHHHHhCCCeeeEeCCchhH-------------------------------------------
Q 003698 695 GHWRFPG----GREMQGYAYILTHPGTPSVFYDHIFS------------------------------------------- 727 (802)
Q Consensus 695 ~~~~~~~----~~~klA~allltlpGiP~IYyGdE~~------------------------------------------- 727 (802)
++++... ...++|++++||+||+||||||||++
T Consensus 325 s~~g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~r 404 (543)
T TIGR02403 325 SRFGDDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAYDILLKKGKSEEEALAILKQKSR 404 (543)
T ss_pred HhcCCchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHHhhhccCC
Confidence 9887432 24678888999999999999998731
Q ss_pred --------H-----------------------------------HHHHHHHHHHHHHhCccccCCCeeEEeeCC-CEEEE
Q 003698 728 --------H-----------------------------------YRQEIEALLSVRKRNKIHCRSRVEIVKAER-DVYAA 763 (802)
Q Consensus 728 --------W-----------------------------------l~~~~~~Li~lRk~~~al~~G~~~~l~~~~-~v~a~ 763 (802)
| ++++||+||+|||++|+|+.|+++.+..++ ++++|
T Consensus 405 d~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~~~aL~~G~~~~~~~~~~~v~a~ 484 (543)
T TIGR02403 405 DNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKSEPVITDGDYQFLLPDDPSVWAY 484 (543)
T ss_pred CCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhhcccccCccEEEeecCCCcEEEE
Confidence 2 678999999999999999999999987764 79999
Q ss_pred EE---CCEEEEEEeCCCC
Q 003698 764 II---DEKVAMKLGPGHY 778 (802)
Q Consensus 764 ~r---~~~~lvvinn~~~ 778 (802)
.| +++++|++|.++.
T Consensus 485 ~R~~~~~~~lVv~N~s~~ 502 (543)
T TIGR02403 485 TRTYKNQKLLVINNFYGE 502 (543)
T ss_pred EEEcCCcEEEEEEECCCC
Confidence 98 5677888887654
No 9
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=6.6e-52 Score=481.34 Aligned_cols=352 Identities=15% Similarity=0.181 Sum_probs=243.6
Q ss_pred hhhhhhhccccccCCCcccccccccCCCCCCCCCCCCCcceeEEeeeeecCCCCCCCHHHHHHHHHHHHhcCCCEEEeCC
Q 003698 371 AAEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPP 450 (802)
Q Consensus 371 ~av~YqIf~drf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~F~Wd~~~~GGdl~GI~~kLdYLk~LGvtaI~L~P 450 (802)
-+|+|||||+||..++. ..+|||+||+++||||++||||+|||+|
T Consensus 10 ~~v~Yqi~~~~f~d~~~-----------------------------------~~~Gdl~gi~~~ldyl~~lGv~~i~l~P 54 (551)
T PRK10933 10 NGVIYQIYPKSFQDTTG-----------------------------------SGTGDLRGVTQRLDYLQKLGVDAIWLTP 54 (551)
T ss_pred cCeEEEEEchHhhcCCC-----------------------------------CCCcCHHHHHHhhHHHHhCCCCEEEECC
Confidence 37899999999965431 0259999999999999999999999999
Q ss_pred CCCCCC-CCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccccCCCCCCC---CccCCCCCCCCCCcc
Q 003698 451 PTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGV---WNIFGGRLNWDDRAV 526 (802)
Q Consensus 451 I~es~s-~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~~~g~---~~~f~g~~~w~~~~~ 526 (802)
|++++. +|||++.||+.|||+|||++||++||++||++||+||||+|+|||+.+|+++... -++|...+.|.+...
T Consensus 55 ~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~ 134 (551)
T PRK10933 55 FYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEP 134 (551)
T ss_pred CCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCC
Confidence 999885 6999999999999999999999999999999999999999999999999864322 122322223322110
Q ss_pred ---cCC-CCCCCCCCC--------CCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEecccccccc------
Q 003698 527 ---VAD-DPHFQGRGN--------KSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG------ 588 (802)
Q Consensus 527 ---~~~-~~~f~~~~~--------~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~------ 588 (802)
+.. ...|.+..+ +....+...+||||++||+||++|++++++|+ ++||||||||+|+++..
T Consensus 135 ~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~ 213 (551)
T PRK10933 135 ETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPD 213 (551)
T ss_pred CCCCCcccccCCCccccccCCCCceEeecccccCCccCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCC
Confidence 000 111221111 11112235799999999999999999999999 79999999999998764
Q ss_pred -----------------hhHHHHHHhc-CC-c-EEEEeecCCCccccccCCCCchHHHHHHHHHHhh-cCCCcccccchh
Q 003698 589 -----------------GYVKDYLEAT-EP-Y-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINA-ASGTAGAFDVTT 647 (802)
Q Consensus 589 -----------------~f~~~~~~~~-~p-~-~liGE~w~~~~~l~g~mny~~~~~~~~i~~~~~~-~~~~~~~fdf~l 647 (802)
+|++++.+.. ++ + ++|||+|.... +.+..|... ...+++.|+|..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vgE~~~~~~--------------~~~~~y~~~~~~~~~~~fnf~~ 279 (551)
T PRK10933 214 DLDGDGRRFYTDGPRAHEFLQEMNRDVFTPRGLMTVGEMSSTSL--------------EHCQRYAALTGSELSMTFNFHH 279 (551)
T ss_pred CcccccccccCCChHHHHHHHHHHHHhhcccCcEEEEeecCCCH--------------HHHHHhhcccCCeeeeEecHHH
Confidence 3566655432 23 3 79999987421 112222211 112233344321
Q ss_pred hHHHHHhhhch----------hhhhhhhhcCCCCCCcCCCCCcceeecccCCCCCcCcCCCCCch----HHHHHHHHHHh
Q 003698 648 KGILHSALDRC----------EYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGG----REMQGYAYILT 713 (802)
Q Consensus 648 ~~~l~~~~~~~----------~~~~l~~~~~~~~~~~~~~P~~~vnfl~nHDt~R~~~~~~~~~~----~~klA~alllt 713 (802)
. ....+... .+.++...+... . . ......+|++|||++|+.++++.+.. ..+++++++||
T Consensus 280 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-~~~~~~~fl~NHD~~R~~sr~g~~~~~~~~~aklla~ll~t 353 (551)
T PRK10933 280 L--KVDYPNGEKWTLAKPDFVALKTLFRHWQQG--M-H-NVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHG 353 (551)
T ss_pred h--hhhhccCCcccccccCHHHHHHHHHHHHHh--h-c-ccCeeccccCCCCcccHHHHcCCchhHHHHHHHHHHHHHHh
Confidence 1 10000000 000111100000 0 0 01134578999999999998874422 35778889999
Q ss_pred CCCeeeEeCCchhH---------------------------------------------------H--------------
Q 003698 714 HPGTPSVFYDHIFS---------------------------------------------------H-------------- 728 (802)
Q Consensus 714 lpGiP~IYyGdE~~---------------------------------------------------W-------------- 728 (802)
+||+|+||||+|++ |
T Consensus 354 lpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pw 433 (551)
T PRK10933 354 MQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPW 433 (551)
T ss_pred CCCceEEEeecccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCC
Confidence 99999999998841 2
Q ss_pred ---------------------HHHHHHHHHHHHHhCccccCCCeeEEeeC-CCEEEEEE---CCEEEEEEeCCCC
Q 003698 729 ---------------------YRQEIEALLSVRKRNKIHCRSRVEIVKAE-RDVYAAII---DEKVAMKLGPGHY 778 (802)
Q Consensus 729 ---------------------l~~~~~~Li~lRk~~~al~~G~~~~l~~~-~~v~a~~r---~~~~lvvinn~~~ 778 (802)
++++||+||+|||++|+|+.|+++.+..+ +++++|.| ++.++|++|.++.
T Consensus 434 l~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~~~~~~~v~af~R~~~~~~~lvv~N~s~~ 508 (551)
T PRK10933 434 IGLCDNYQEINVEAALADEDSVFYTYQKLIALRKQEPVLTWGDYQDLLPNHPSLWCYRREWQGQTLLVIANLSRE 508 (551)
T ss_pred CCCCcccccccHHHHhcCcccHHHHHHHHHHHhhcChhhccceeEEeccCCCcEEEEEEEcCCcEEEEEEECCCC
Confidence 66899999999999999999999987654 57999988 5678888887653
No 10
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=5.7e-49 Score=455.95 Aligned_cols=341 Identities=21% Similarity=0.254 Sum_probs=241.9
Q ss_pred CCCCcceeEEeeeeecCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCCCCC--CCCCCCCccCCccCCCCCCHHHHHHHH
Q 003698 405 GTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVV 482 (802)
Q Consensus 405 ~~~~~y~~~~~~F~Wd~~~~GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~--s~hGYd~~Dy~~IDp~~Gt~edfk~LV 482 (802)
.+.+.|+++++.|+ ..|||+||+++|||||+||||+||||||++++ .+|||++.||++|||+|||++|||+||
T Consensus 92 ~~~viYE~hv~~f~-----~~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV 166 (542)
T TIGR02402 92 EEAVIYELHVGTFT-----PEGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALV 166 (542)
T ss_pred cccEEEEEEhhhcC-----CCCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHH
Confidence 45689999999997 36999999999999999999999999998887 689999999999999999999999999
Q ss_pred HHHHHcCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCCh---HHH
Q 003698 483 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQD---FVR 559 (802)
Q Consensus 483 ~~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np---~Vr 559 (802)
++||++||+||||+|+||++.++... ..|. ++|... +.++| .+++|+++| +||
T Consensus 167 ~~aH~~Gi~VilD~V~NH~~~~~~~~----~~~~--------------~y~~~~--~~~~w----g~~~n~~~~~~~~vr 222 (542)
T TIGR02402 167 DAAHGLGLGVILDVVYNHFGPEGNYL----PRYA--------------PYFTDR--YSTPW----GAAINFDGPGSDEVR 222 (542)
T ss_pred HHHHHCCCEEEEEEccCCCCCccccc----cccC--------------ccccCC--CCCCC----CCccccCCCcHHHHH
Confidence 99999999999999999998654210 0110 022111 11111 257999999 999
Q ss_pred HHHHHHHHHHHhhcCCceEEecccccccc----hhHHHHHH---hcCCc----EEEEeecCCC-ccc----cccCCCC--
Q 003698 560 KDIKEWLCWLRNEIGYDGWRLDFVRGFWG----GYVKDYLE---ATEPY----FAVGEYWDSL-SYT----YGEMDHN-- 621 (802)
Q Consensus 560 ~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~----~f~~~~~~---~~~p~----~liGE~w~~~-~~l----~g~mny~-- 621 (802)
++|++++++|+++|||||||||+++++.. .|++++.+ +.+|+ ++|||.|... .+. .+.+.+.
T Consensus 223 ~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~ 302 (542)
T TIGR02402 223 RYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAELRPVHLIAESDLNDPSLVTPREDGGYGLDAQ 302 (542)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCCceEEEEEecCCCCCcccccccCCccceEEE
Confidence 99999999999999999999999988864 37766544 34554 7999998542 222 1222111
Q ss_pred -chHHHHHHHHHHhhcC-CCcccccchhhHHHHHhhhch-----hhhhhh-hhcCCCCCCcCCCCCcceeecccCCC---
Q 003698 622 -QDAHRQRIIDWINAAS-GTAGAFDVTTKGILHSALDRC-----EYWRLS-DEKGKPPGVVGWWPSRAVTFIENHDT--- 690 (802)
Q Consensus 622 -~~~~~~~i~~~~~~~~-~~~~~fdf~l~~~l~~~~~~~-----~~~~l~-~~~~~~~~~~~~~P~~~vnfl~nHDt--- 690 (802)
.+.++..+..++.+.. +..+.+.-.. ..+.+.+..+ ...... ...+.... ..-|.++++|++|||+
T Consensus 303 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~-~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~vnfl~nHD~~gn 379 (542)
T TIGR02402 303 WNDDFHHALHVLLTGERQGYYADFGDPL-AALAKTLRDGFVYDGEYSPFRGRPHGRPSG--DLPPHRFVVFIQNHDQIGN 379 (542)
T ss_pred ECchHHHHHHHHhcCCcceeecccCcCH-HHHHHHHHHhcccCccccccccccCCCCCC--CCCHHHEEEEccCcccccc
Confidence 1235677777765321 1211111011 1222222111 000000 00000000 0124578999999997
Q ss_pred ----CCcCcCCCCCchHHHHHHHHHHhCCCeeeEeCCchh----------------------------------------
Q 003698 691 ----GSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIF---------------------------------------- 726 (802)
Q Consensus 691 ----~R~~~~~~~~~~~~klA~allltlpGiP~IYyGdE~---------------------------------------- 726 (802)
.|+...+. .++.++|.+++||+||+||||||+|+
T Consensus 380 ~~~~~Rl~~~~~--~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~p 457 (542)
T TIGR02402 380 RALGERLSQLLS--PGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVP 457 (542)
T ss_pred cchhhhhhhcCC--HHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCC
Confidence 67776553 57899999999999999999999984
Q ss_pred -------------HH----------HHHHHHHHHHHHHhCccccCCCeeEEee----CCCEEEEEE-CCEEEEEEeCCCC
Q 003698 727 -------------SH----------YRQEIEALLSVRKRNKIHCRSRVEIVKA----ERDVYAAII-DEKVAMKLGPGHY 778 (802)
Q Consensus 727 -------------~W----------l~~~~~~Li~lRk~~~al~~G~~~~l~~----~~~v~a~~r-~~~~lvvinn~~~ 778 (802)
+| ++++||+||+|||++++|+.++.+.+.. ++.++++.. +++++|++|.+..
T Consensus 458 dp~~~~~~~~~~~~W~~~~~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~~ 537 (542)
T TIGR02402 458 DPQDEETFLRSKLDWAEAESGEHARWLAFYRDLLALRRELPVLLLPGARALEVVVDEDPGWVAVRFGRGELVLAANLSTS 537 (542)
T ss_pred CCCchhhHhhccCCcccccccchHHHHHHHHHHHHHhccCccccCCCcccceeeecCCCCEEEEEECCCeEEEEEeCCCC
Confidence 26 8899999999999999998887665543 346777665 5678888887764
Q ss_pred C
Q 003698 779 E 779 (802)
Q Consensus 779 ~ 779 (802)
.
T Consensus 538 ~ 538 (542)
T TIGR02402 538 P 538 (542)
T ss_pred C
Confidence 4
No 11
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=1.9e-49 Score=466.98 Aligned_cols=343 Identities=18% Similarity=0.230 Sum_probs=228.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeCCCCCCCC----------CCCCCCccCCccCCCCCC--------HHHHHHHHHHHHHc
Q 003698 427 WYMELKEKATELSSLGFSVIWLPPPTESVS----------PEGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDV 488 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~PI~es~s----------~hGYd~~Dy~~IDp~~Gt--------~edfk~LV~~aH~~ 488 (802)
++.||+++|||||+||||+||||||+++.+ +|||++.||++++++||+ .+|||+||++||++
T Consensus 162 ~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~ 241 (605)
T TIGR02104 162 GPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHEN 241 (605)
T ss_pred ccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHC
Confidence 455667779999999999999999999864 599999999999999987 48999999999999
Q ss_pred CCEEEEEeccCcccccCCCCCCCCccCCCCC-CCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHH
Q 003698 489 GMKILGDVVLNHRCAHYQNQNGVWNIFGGRL-NWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLC 567 (802)
Q Consensus 489 GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~-~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~ 567 (802)
||+||||+|+|||+.... .+|.+.. .|... .+..+.+..+. ....++|+++|+||++|+++++
T Consensus 242 Gi~VilDvV~NH~~~~~~------~~f~~~~~~~~~~--------~~~~g~~~~~~--g~~~~~~~~~~~v~~~i~~~~~ 305 (605)
T TIGR02104 242 GIRVIMDVVYNHTYSREE------SPFEKTVPGYYYR--------YNEDGTLSNGT--GVGNDTASEREMMRKFIVDSVL 305 (605)
T ss_pred CCEEEEEEEcCCccCCCC------CcccCCCCCeeEE--------ECCCCCccCCC--cccCCcccCCHHHHHHHHHHHH
Confidence 999999999999985321 1222210 11100 01111111111 1234799999999999999999
Q ss_pred HHHhhcCCceEEecccccccchhHHHHHHh---cCCc-EEEEeecCCCccccccCCCCchHHHHHHHHHHhhcCCCcccc
Q 003698 568 WLRNEIGYDGWRLDFVRGFWGGYVKDYLEA---TEPY-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAF 643 (802)
Q Consensus 568 ~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~~---~~p~-~liGE~w~~~~~l~g~mny~~~~~~~~i~~~~~~~~~~~~~f 643 (802)
+|+++|||||||||+|.+++.+|++++.++ .+|+ +++||.|+..+.+.. +.. .....+ ... ...+.|
T Consensus 306 ~W~~e~~iDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~ligE~w~~~~~~~~---~~~----~~~~~~-~~~-~~~~~~ 376 (605)
T TIGR02104 306 YWVKEYNIDGFRFDLMGIHDIETMNEIRKALNKIDPNILLYGEGWDLGTPLPP---EQK----ATKANA-YQM-PGIAFF 376 (605)
T ss_pred HHHHHcCCCEEEEechhcCCHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcch---hhh----hhhhcc-CCC-CceEEE
Confidence 999999999999999999999999887654 4677 899999987431100 000 000000 000 011233
Q ss_pred cchhhHHHHHhhh--------ch---hhhhhhhhcCCCC-----CCcCCCCCcceeecccCCCCCcCcCCCC--------
Q 003698 644 DVTTKGILHSALD--------RC---EYWRLSDEKGKPP-----GVVGWWPSRAVTFIENHDTGSTQGHWRF-------- 699 (802)
Q Consensus 644 df~l~~~l~~~~~--------~~---~~~~l~~~~~~~~-----~~~~~~P~~~vnfl~nHDt~R~~~~~~~-------- 699 (802)
++.++..++.... .+ ....+...+.... ......|..+|||++|||+.|+..++..
T Consensus 377 n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~~~~~~ 456 (605)
T TIGR02104 377 NDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDAVKPSALDPSQSINYVECHDNHTLWDKLSLANPDETEE 456 (605)
T ss_pred CCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhcccccccCChhheEEEEEecCCCCHHHHHHhhCCCCCHH
Confidence 3333333321100 00 0111111111000 0012356689999999999987544321
Q ss_pred -CchHHHHHHHHHHhCCCeeeEeCCchh--------------------HH--------HHHHHHHHHHHHHhCccccCCC
Q 003698 700 -PGGREMQGYAYILTHPGTPSVFYDHIF--------------------SH--------YRQEIEALLSVRKRNKIHCRSR 750 (802)
Q Consensus 700 -~~~~~klA~allltlpGiP~IYyGdE~--------------------~W--------l~~~~~~Li~lRk~~~al~~G~ 750 (802)
...+.++|++++||+||+||||||||+ +| +++++|+||+|||++|+|+.|+
T Consensus 457 ~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g~~n~y~~~d~~~~ldW~~~~~~~~~~~~~~~Li~lRk~~pal~~~~ 536 (605)
T TIGR02104 457 QLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQGDENSYNSPDSINQLDWDRKATFKDDVNYIKGLIALRKAHPAFRLSS 536 (605)
T ss_pred HHHHHHHHHHHHHHHcCCCceeecchhhhccCCCCCCCccCCCcccccCccccccchHHHHHHHHHHHHHhhCccccCCC
Confidence 135789999999999999999999997 25 8999999999999999999987
Q ss_pred eeE-------Eee-CCCEEEEEEC--------CEEEEEEeCCCCCCC--CC-CCCeEEEEcCC
Q 003698 751 VEI-------VKA-ERDVYAAIID--------EKVAMKLGPGHYEPP--SG-SQNWSFVTEGR 794 (802)
Q Consensus 751 ~~~-------l~~-~~~v~a~~r~--------~~~lvvinn~~~~~~--~~-~~~~~~~~~g~ 794 (802)
+.. +.. ++.+++|.|. +.++|++|.+..... .. .+.|+..+++.
T Consensus 537 ~~~i~~~~~~~~~~~~~vla~~r~~~~~~~~~~~llVv~N~s~~~~~v~lp~~~~w~~~~~~~ 599 (605)
T TIGR02104 537 AEDIRKHLEFLPAEPSGVIAYRLKDHANGDPWKDIIVIHNANPEPVDIQLPSDGTWNVVVDNK 599 (605)
T ss_pred hhhhcceeEEccCCCCcEEEEEEeCCcCCCCcCeEEEEEeCCCCCeEEECCCCCCEEEEECCC
Confidence 642 222 3578999872 257788887643221 11 24577766654
No 12
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=3e-48 Score=458.66 Aligned_cols=320 Identities=21% Similarity=0.294 Sum_probs=224.8
Q ss_pred CCCCcceeEEeeeeecCC----CCCCCHHHHHHH--HHHHHhcCCCEEEeCCCCCCC-----------CCCCCCCccCCc
Q 003698 405 GTGTGFEILCQGFNWESH----KSGRWYMELKEK--ATELSSLGFSVIWLPPPTESV-----------SPEGYMPRDLYN 467 (802)
Q Consensus 405 ~~~~~y~~~~~~F~Wd~~----~~GGdl~GI~~k--LdYLk~LGvtaI~L~PI~es~-----------s~hGYd~~Dy~~ 467 (802)
.+.+.|++++++|+-... ...|+|+||+++ |||||+||||+|||||||++. ++|||+|.||++
T Consensus 154 ~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a 233 (688)
T TIGR02100 154 EDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFA 233 (688)
T ss_pred cccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccc
Confidence 455677777777763211 235999999985 999999999999999999875 369999999999
Q ss_pred cCCCC---CCHHHHHHHHHHHHHcCCEEEEEeccCcccccCCCCCCCCccCCCC--CCCCCCcccCCCCCCCCCCCCCCC
Q 003698 468 LSSRY---GNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSG 542 (802)
Q Consensus 468 IDp~~---Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~--~~w~~~~~~~~~~~f~~~~~~~~~ 542 (802)
|||+| |+.+|||+||++||++||+||||+|||||+..+.. +....+.+. ..|+... . ...+.+..
T Consensus 234 ~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~--~~~~~~~~~d~~~yy~~~--~-----~~~~~~~~- 303 (688)
T TIGR02100 234 PEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNEL--GPTLSFRGIDNASYYRLQ--P-----DDKRYYIN- 303 (688)
T ss_pred cChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCC--CCcccccCCCCCcceEec--C-----CCCceecC-
Confidence 99999 57899999999999999999999999999976532 111112211 0111000 0 00011111
Q ss_pred CCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEecccccccc---------hhHHHHHHh-cCCc-EEEEeecCCC
Q 003698 543 DNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG---------GYVKDYLEA-TEPY-FAVGEYWDSL 611 (802)
Q Consensus 543 ~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~---------~f~~~~~~~-~~p~-~liGE~w~~~ 611 (802)
.....+++|+++|+||++|+++++||+++|||||||||+|..+.. .|++++.+. ..|+ ++|||.|+..
T Consensus 304 -~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d~~~~~~~ligE~W~~~ 382 (688)
T TIGR02100 304 -DTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQDPVLAQVKLIAEPWDIG 382 (688)
T ss_pred -CCCccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhCcccCCeEEEEeeecCC
Confidence 123457899999999999999999999999999999999997753 566665543 3455 7999999864
Q ss_pred --ccccccC----CCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeec
Q 003698 612 --SYTYGEM----DHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFI 685 (802)
Q Consensus 612 --~~l~g~m----ny~~~~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~P~~~vnfl 685 (802)
.|..+.+ ..+.+.+|+.|++|+.+..+.... +...+... ..+... ....|.++||||
T Consensus 383 ~~~~~~~~~~~~~~~~Nd~frd~ir~f~~g~~~~~~~--------~~~~l~gs--~~~~~~-------~~~~~~~~iNyv 445 (688)
T TIGR02100 383 PGGYQVGNFPPGWAEWNDRYRDDMRRFWRGDAGMIGE--------LANRLTGS--SDLFEH-------NGRRPWASINFV 445 (688)
T ss_pred CCcccccCCCCceEEecHHHHHHHHHHHcCCCCcHHH--------HHHHHhCC--Hhhccc-------cCCCcCEEEEEE
Confidence 2332211 112345689999998754322111 11111110 000000 112466899999
Q ss_pred ccCCCCCcCcCCCC-------------------------------C-------chHHHHHHHHHHhCCCeeeEeCCchh-
Q 003698 686 ENHDTGSTQGHWRF-------------------------------P-------GGREMQGYAYILTHPGTPSVFYDHIF- 726 (802)
Q Consensus 686 ~nHDt~R~~~~~~~-------------------------------~-------~~~~klA~allltlpGiP~IYyGdE~- 726 (802)
++||+.|+...+.. + ..+.++|++++||+||+|||||||||
T Consensus 446 ~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~GdE~g 525 (688)
T TIGR02100 446 TAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLAGDEFG 525 (688)
T ss_pred eCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeeecHhhc
Confidence 99999775442110 0 24678999999999999999999997
Q ss_pred -------------------HH--------HHHHHHHHHHHHHhCccccCCCee
Q 003698 727 -------------------SH--------YRQEIEALLSVRKRNKIHCRSRVE 752 (802)
Q Consensus 727 -------------------~W--------l~~~~~~Li~lRk~~~al~~G~~~ 752 (802)
+| +++++|+||+|||+||+|+.+.+.
T Consensus 526 ~t~~G~~n~y~~~~~~~~~dW~~~~~~~~l~~~~k~Li~lRk~~~~l~~~~~~ 578 (688)
T TIGR02100 526 RTQQGNNNAYCQDNEIGWVDWSLDEGDDELLAFTKKLIALRKAHPVLRRERFF 578 (688)
T ss_pred cCCCCCCCCccCCCcccccCcccccccHHHHHHHHHHHHHHHhCchhcccccc
Confidence 25 999999999999999999876543
No 13
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=2.5e-48 Score=482.05 Aligned_cols=354 Identities=20% Similarity=0.237 Sum_probs=245.0
Q ss_pred hccccccCCCccc---ccccc----------cCCCCCCCCCCCCCcceeEEeeeeecCCCCCCCHHHHHHHHH------H
Q 003698 377 IFRTTAPTFFEEA---AVELE----------ESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKAT------E 437 (802)
Q Consensus 377 If~drf~~~~~~~---~~~~~----------~~~~~~~~~~~~~~~y~~~~~~F~Wd~~~~GGdl~GI~~kLd------Y 437 (802)
||++||.++++++ ....+ ..+.+......+.+.|++++++|+...+..||+++|+.++|+ |
T Consensus 116 i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~~~~~~~~~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~y 195 (1221)
T PRK14510 116 IFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPRSPLHGDWDDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISY 195 (1221)
T ss_pred cccccccCCCcccccCcccCccceeecccccCCCCCCCCCcccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHH
Confidence 8999998876421 11111 011122234456789999999998644555666666666665 9
Q ss_pred HHhcCCCEEEeCCCCCCC-----------CCCCCCCccCCccCCCCC--CHHHHHHHHHHHHHcCCEEEEEeccCccccc
Q 003698 438 LSSLGFSVIWLPPPTESV-----------SPEGYMPRDLYNLSSRYG--NIDELKDVVNKFHDVGMKILGDVVLNHRCAH 504 (802)
Q Consensus 438 Lk~LGvtaI~L~PI~es~-----------s~hGYd~~Dy~~IDp~~G--t~edfk~LV~~aH~~GIkVILD~V~NHt~~~ 504 (802)
||+||||+||||||+++. +||||++.||++|||+|| +.+|||+||++||++||+||||+|||||+.+
T Consensus 196 Lk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~ 275 (1221)
T PRK14510 196 LKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGES 275 (1221)
T ss_pred HHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCC
Confidence 999999999999999875 468999999999999999 9999999999999999999999999999976
Q ss_pred CCCCCCCCccCCCCCCCCCCcccCCCCCCC----CCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEe
Q 003698 505 YQNQNGVWNIFGGRLNWDDRAVVADDPHFQ----GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 580 (802)
Q Consensus 505 ~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~----~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRl 580 (802)
+.. +....+.+. + +.++|. ....+..+++...+ +|+++|+|+++|+++++||++ +|||||||
T Consensus 276 ~~~--~p~~~~~~~---d------~~~yy~~~~~~~~~y~~~~G~gn~--~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRf 341 (1221)
T PRK14510 276 NHY--GPTLSAYGS---D------NSPYYRLEPGNPKEYENWWGCGNL--PNLERPFILRLPMDVLRSWAK-RGVDGFRL 341 (1221)
T ss_pred CCC--CCcccccCC---C------CCCceEecCCCCCcccCCCCCCCc--cccCCHHHHHHHHHHHHHHHH-hCCCEEEE
Confidence 532 110001110 0 001111 11122223333333 566699999999999999997 99999999
Q ss_pred cccccc---cchhHHHH---HHhcCCc-EE-----EEeecCCCc--ccc-------ccCCCCchHHHHHHHHHHhhcCCC
Q 003698 581 DFVRGF---WGGYVKDY---LEATEPY-FA-----VGEYWDSLS--YTY-------GEMDHNQDAHRQRIIDWINAASGT 639 (802)
Q Consensus 581 D~a~~~---~~~f~~~~---~~~~~p~-~l-----iGE~w~~~~--~l~-------g~mny~~~~~~~~i~~~~~~~~~~ 639 (802)
|+|.++ +.+|++.+ +++++|+ ++ |||.|+..+ |.. +.|||. +++.+++|+.+..+.
T Consensus 342 Dla~~l~r~~~~f~~~~~~~l~ai~~d~~l~~~~ligE~Wd~~~~~~~~g~f~~~~~~~N~~---frd~vr~f~~g~~~~ 418 (1221)
T PRK14510 342 DLADELAREPDGFIDEFRQFLKAMDQDPVLRRLKMIAEVWDDGLGGYQYGKFPQYWGEWNDP---LRDIMRRFWLGDIGM 418 (1221)
T ss_pred echhhhccCccchHHHHHHHHHHhCCCcCcccCcEEEecccCCCCccccCCCCcceeeeccH---HHHHHHHHhcCCCch
Confidence 999999 88887664 4566666 44 999998642 222 335554 478888888653221
Q ss_pred cccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccCCCCCcCcCCCC--------------------
Q 003698 640 AGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRF-------------------- 699 (802)
Q Consensus 640 ~~~fdf~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~P~~~vnfl~nHDt~R~~~~~~~-------------------- 699 (802)
.. .+...+.+. .++.. .....|...|||++|||+.|+.+.+.+
T Consensus 419 ~~--------~~a~~l~gs--~d~~~-------~~~~~~~~~iNfi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~ 481 (1221)
T PRK14510 419 AG--------ELATRLAGS--ADIFP-------HRRRNFSRSINFITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQ 481 (1221)
T ss_pred HH--------HHHHHHhCc--HhhcC-------ccCCCcccceEEEeeCCchHHHHHhhhccccchhccccccCCCCccc
Confidence 10 111111110 00000 001245678999999999997654431
Q ss_pred ------------------CchHHHHHHHHHHhCCCeeeEeCCchhH--------------------H------HHHHHHH
Q 003698 700 ------------------PGGREMQGYAYILTHPGTPSVFYDHIFS--------------------H------YRQEIEA 735 (802)
Q Consensus 700 ------------------~~~~~klA~allltlpGiP~IYyGdE~~--------------------W------l~~~~~~ 735 (802)
...+.++|++++||+||+||||||||++ | +++++|+
T Consensus 482 s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy~GdE~g~tq~Gn~n~y~~~~~r~~~~W~~~~~~l~~f~k~ 561 (1221)
T PRK14510 482 SWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLYYGDEAGRSQNGNNNGYAQDNNRGTYPWGNEDEELLSFFRR 561 (1221)
T ss_pred cccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEecchhcccccCCCCCCCCCCCccccCCcccccHHHHHHHHH
Confidence 0235789999999999999999999973 5 9999999
Q ss_pred HHHHHHhCccccCCCeeEEee-----CCCEEEEE
Q 003698 736 LLSVRKRNKIHCRSRVEIVKA-----ERDVYAAI 764 (802)
Q Consensus 736 Li~lRk~~~al~~G~~~~l~~-----~~~v~a~~ 764 (802)
||+|||++|+|+.|++..... ..+|..|.
T Consensus 562 Li~lRk~~~~L~~g~~~~~~~~~~~~~~dv~w~~ 595 (1221)
T PRK14510 562 LIKLRREYGVLRQGEFSSGTPVDASGGKDVEWLR 595 (1221)
T ss_pred HHHHHHhChhhccCccccCcccccCCCCCEEEEC
Confidence 999999999999999886542 23566654
No 14
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=1.8e-49 Score=428.59 Aligned_cols=284 Identities=26% Similarity=0.420 Sum_probs=198.4
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCCCCC-CCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccccc
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 504 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~es~-s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~ 504 (802)
|||+||++||||||+||||+|||+||++++ ++|||++.||++|||+|||++||++||++||++||+||||+|+||++..
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~ 80 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDD 80 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETT
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccc
Confidence 899999999999999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCc----cCCCCCCCCCC--cccCCCC-CCCCCCCCC---C--CCCCCCCCcccCCChHHHHHHHHHHHHHHhh
Q 003698 505 YQNQNGVWN----IFGGRLNWDDR--AVVADDP-HFQGRGNKS---S--GDNFHAAPNIDHSQDFVRKDIKEWLCWLRNE 572 (802)
Q Consensus 505 ~~~~~g~~~----~f~g~~~w~~~--~~~~~~~-~f~~~~~~~---~--~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e 572 (802)
|+++..... ++.....|.+. ..+.... .+....... . ...+..+|+||++||+||++|++++++|+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~-~ 159 (316)
T PF00128_consen 81 HPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWI-E 159 (316)
T ss_dssp SHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHH-H
T ss_pred cccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchh-h
Confidence 875211100 01111223221 0010000 111111111 0 24678999999999999999999999999 6
Q ss_pred cCCceEEecccccccchhHHHHHHhcC---Cc-EEEEeecCCCccccccCCCCchHHHHHHHHHHhh-cCCCcccccchh
Q 003698 573 IGYDGWRLDFVRGFWGGYVKDYLEATE---PY-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINA-ASGTAGAFDVTT 647 (802)
Q Consensus 573 ~GIDGfRlD~a~~~~~~f~~~~~~~~~---p~-~liGE~w~~~~~l~g~mny~~~~~~~~i~~~~~~-~~~~~~~fdf~l 647 (802)
+||||||||+|++++.++++++.++++ |. +++||+|.... ..+..+... .......+++..
T Consensus 160 ~giDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 225 (316)
T PF00128_consen 160 EGIDGFRLDAAKHIPKEFWKEFRDEVKEEKPDFFLIGEVWGGDN--------------EDLRQYAYDGYFDLDSVFDFPD 225 (316)
T ss_dssp TTESEEEETTGGGSSHHHHHHHHHHHHHHHTTSEEEEEESSSSH--------------HHHHHHHHHGTTSHSEEEHHHH
T ss_pred ceEeEEEEccccccchhhHHHHhhhhhhhccccceeeeeccCCc--------------cccchhhhccccccchhhcccc
Confidence 889999999999999999999877653 56 89999998742 111111111 111112344443
Q ss_pred hHHHHHhh---hch--hhhhhhhhcCCCCCCcCCC--CCcceeecccCCCCCcCcCCCCCchHHHHHHHHHHhCCCeeeE
Q 003698 648 KGILHSAL---DRC--EYWRLSDEKGKPPGVVGWW--PSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSV 720 (802)
Q Consensus 648 ~~~l~~~~---~~~--~~~~l~~~~~~~~~~~~~~--P~~~vnfl~nHDt~R~~~~~~~~~~~~klA~allltlpGiP~I 720 (802)
........ ..+ ....+...... ....+ +...++|++|||+.|+.+.+.....+.++|++++||+||+|+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~ll~~pG~P~i 302 (316)
T PF00128_consen 226 YGLRSSFFDFWRHGDGDASDLANWLSS---WQSSYPDPYRAVNFLENHDTPRFASRFGNNRDRLKLALAFLLTSPGIPMI 302 (316)
T ss_dssp HHHHHHHHHHHTTTSSHHHHHHHHHHH---HHHHSTTGGGEEEESSHTTSSTHHHHTTTHHHHHHHHHHHHHHSSSEEEE
T ss_pred cccccchhhhhccccchhhhhhhhhhh---hhhhhcccceeeecccccccccchhhhcccchHHHHHHHHHHcCCCccEE
Confidence 32222221 000 11111111000 00011 3468999999999999887774444899999999999999999
Q ss_pred eCCchhH
Q 003698 721 FYDHIFS 727 (802)
Q Consensus 721 YyGdE~~ 727 (802)
|||+|++
T Consensus 303 y~G~E~g 309 (316)
T PF00128_consen 303 YYGDEIG 309 (316)
T ss_dssp ETTGGGT
T ss_pred EeChhcc
Confidence 9999985
No 15
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=8.5e-48 Score=451.64 Aligned_cols=361 Identities=17% Similarity=0.238 Sum_probs=242.7
Q ss_pred CCCCCCcceeEEeeeeecCC----CCCCCHHHHHH--HHHHHHhcCCCEEEeCCCCCCC-----------CCCCCCCccC
Q 003698 403 SPGTGTGFEILCQGFNWESH----KSGRWYMELKE--KATELSSLGFSVIWLPPPTESV-----------SPEGYMPRDL 465 (802)
Q Consensus 403 ~~~~~~~y~~~~~~F~Wd~~----~~GGdl~GI~~--kLdYLk~LGvtaI~L~PI~es~-----------s~hGYd~~Dy 465 (802)
...+.+.|++++++|+-..+ ...|+|+|+++ +|||||+||||+||||||+++. .||||++.||
T Consensus 147 ~~~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~y 226 (658)
T PRK03705 147 PWGSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAM 226 (658)
T ss_pred CccccEEEEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccc
Confidence 34567899999999973111 23499999997 5999999999999999999974 4699999999
Q ss_pred CccCCCCCCH-----HHHHHHHHHHHHcCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCC
Q 003698 466 YNLSSRYGNI-----DELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKS 540 (802)
Q Consensus 466 ~~IDp~~Gt~-----edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~ 540 (802)
|+|||+|||. +|||+||++||++||+||||+|+|||+.... .+.+..+.+. +. ....++...+.+.
T Consensus 227 fa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~--~~~~~~~~~~---d~----~~yy~~~~~g~~~ 297 (658)
T PRK03705 227 FALDPAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELDL--DGPTLSLRGI---DN----RSYYWIREDGDYH 297 (658)
T ss_pred cccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCC--CCcchhcccC---CC----ccceEECCCCCcC
Confidence 9999999995 6999999999999999999999999986431 1211112110 00 0000111122222
Q ss_pred CCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEecccccccc--hhHHH--HHHhc-----CCc-EEEEeecCC
Q 003698 541 SGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG--GYVKD--YLEAT-----EPY-FAVGEYWDS 610 (802)
Q Consensus 541 ~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~--~f~~~--~~~~~-----~p~-~liGE~w~~ 610 (802)
.+. ...++||+++|+|+++|+++++||+++|||||||||+|.++.. .|++. +++++ .++ +++||.|+.
T Consensus 298 ~~~--g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~d~vl~~~~ligE~Wd~ 375 (658)
T PRK03705 298 NWT--GCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQNDPVLSQVKLIAEPWDI 375 (658)
T ss_pred CCC--CccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhhCccccceEEEEecccC
Confidence 221 2457999999999999999999999999999999999998762 23322 23322 345 799999986
Q ss_pred C--ccccccC----CCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceee
Q 003698 611 L--SYTYGEM----DHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTF 684 (802)
Q Consensus 611 ~--~~l~g~m----ny~~~~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~P~~~vnf 684 (802)
. .|..|.+ ....+.+|+.|++|+.+..+... ++ .. .+.+ +. .+.. ...+.|.+.|||
T Consensus 376 ~~~~~~~g~~~~~~~~~Nd~fRd~ir~f~~~~~~~~~--~~-----~~-~l~g-s~-~~~~-------~~~~~p~~siNy 438 (658)
T PRK03705 376 GPGGYQVGNFPPPFAEWNDHFRDAARRFWLHGDLPLG--EF-----AG-RFAA-SS-DVFK-------RNGRLPSASINL 438 (658)
T ss_pred CCChhhhcCCCcceEEEchHHHHHHHHHHccCCCcHH--HH-----HH-HHhc-ch-hhcc-------ccCCCCCeEEEE
Confidence 4 2332321 12234568899998764322111 11 11 1111 00 0100 012357789999
Q ss_pred cccCCCCCcCcCCCC--------------------------------------CchHHHHHHHHHHhCCCeeeEeCCchh
Q 003698 685 IENHDTGSTQGHWRF--------------------------------------PGGREMQGYAYILTHPGTPSVFYDHIF 726 (802)
Q Consensus 685 l~nHDt~R~~~~~~~--------------------------------------~~~~~klA~allltlpGiP~IYyGdE~ 726 (802)
+++||+.++...+.+ ...+.++|++++|+++|+|||||||||
T Consensus 439 v~~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~GdE~ 518 (658)
T PRK03705 439 VTAHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLAGDEH 518 (658)
T ss_pred EEeCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHhhHHh
Confidence 999999765442210 023568899999999999999999997
Q ss_pred --------------------HH------HHHHHHHHHHHHHhCccccCCCe--------eEEeeCC------------CE
Q 003698 727 --------------------SH------YRQEIEALLSVRKRNKIHCRSRV--------EIVKAER------------DV 760 (802)
Q Consensus 727 --------------------~W------l~~~~~~Li~lRk~~~al~~G~~--------~~l~~~~------------~v 760 (802)
+| +++++|+||+|||+||+|+..++ .++..++ ..
T Consensus 519 grtq~G~nN~y~~~~~i~~~dW~~~~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~w~~~~~~ 598 (658)
T PRK03705 519 GHSQHGNNNAYCQDNALTWLDWSQADRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSADEWQQGPKQ 598 (658)
T ss_pred ccCCCCCCCCccCCCCccccccchhhhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChhHhCCcceE
Confidence 35 99999999999999999986554 2222221 23
Q ss_pred EEEEECCEEEEEEeCCCCCCC--CCCCCeEEEE
Q 003698 761 YAAIIDEKVAMKLGPGHYEPP--SGSQNWSFVT 791 (802)
Q Consensus 761 ~a~~r~~~~lvvinn~~~~~~--~~~~~~~~~~ 791 (802)
+++...+.++|++|....... .+.+.|++.+
T Consensus 599 ~~~~~~~~~~v~~N~~~~~~~~~lp~~~w~~~~ 631 (658)
T PRK03705 599 LQILLSDRWLIAINATLEVTEIVLPEGEWHAIP 631 (658)
T ss_pred EEEEECCCEEEEECCCCCCeEEECCCcceEEEE
Confidence 555555667777776543321 1124577763
No 16
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=9.1e-48 Score=452.69 Aligned_cols=331 Identities=17% Similarity=0.157 Sum_probs=225.7
Q ss_pred CCcceeEEeeeeecCCCCCCCHHHHHHHH-HHHHhcCCCEEEeCCCCCCC--CCCCCCCccCCccCCCCCCHHHHHHHHH
Q 003698 407 GTGFEILCQGFNWESHKSGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVN 483 (802)
Q Consensus 407 ~~~y~~~~~~F~Wd~~~~GGdl~GI~~kL-dYLk~LGvtaI~L~PI~es~--s~hGYd~~Dy~~IDp~~Gt~edfk~LV~ 483 (802)
.+.|++++++|. ..|+|+||+++| ||||+||||+||||||++++ .+|||+++|||+|+++|||++|||+||+
T Consensus 139 ~~iYe~hv~~~~-----~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~ 213 (613)
T TIGR01515 139 VSIYELHLGSWR-----HGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVD 213 (613)
T ss_pred ceEEEEehhhcc-----CCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHH
Confidence 468999999986 359999999997 99999999999999999987 6799999999999999999999999999
Q ss_pred HHHHcCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHH
Q 003698 484 KFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIK 563 (802)
Q Consensus 484 ~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~ 563 (802)
+||++||+||||+|+||++.++.. ...|++...| +...... ......+.+++|+++|+||++|+
T Consensus 214 ~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~~~y-----------~~~~~~~-~~~~~w~~~~~~~~~~~Vr~~l~ 277 (613)
T TIGR01515 214 ACHQAGIGVILDWVPGHFPKDDHG----LAEFDGTPLY-----------EHKDPRD-GEHWDWGTLIFDYGRPEVRNFLV 277 (613)
T ss_pred HHHHCCCEEEEEecccCcCCccch----hhccCCCcce-----------eccCCcc-CcCCCCCCceecCCCHHHHHHHH
Confidence 999999999999999999976531 1112221001 0000000 00111246799999999999999
Q ss_pred HHHHHHHhhcCCceEEeccccccc------------------------chhHHHHHH---hcCCc-EEEEeecCCCc---
Q 003698 564 EWLCWLRNEIGYDGWRLDFVRGFW------------------------GGYVKDYLE---ATEPY-FAVGEYWDSLS--- 612 (802)
Q Consensus 564 ~~l~~Wi~e~GIDGfRlD~a~~~~------------------------~~f~~~~~~---~~~p~-~liGE~w~~~~--- 612 (802)
+++++|+++|||||||||++.++- ..||+++.+ +.+|+ ++|||.+.+.+
T Consensus 278 ~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~ 357 (613)
T TIGR01515 278 ANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVT 357 (613)
T ss_pred HHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCcccc
Confidence 999999999999999999975432 357777654 44677 89999875421
Q ss_pred --cccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccCCC
Q 003698 613 --YTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDT 690 (802)
Q Consensus 613 --~l~g~mny~~~~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~P~~~vnfl~nHDt 690 (802)
..+|.+ +++..+++.+...+...+......+-.............+.. ...+++|||+
T Consensus 358 ~~~~~gg~-------------------gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~sHD~ 417 (613)
T TIGR01515 358 RPTDEGGL-------------------GFHYKWNMGWMHDTLDYMSTDPVERQYHHQLITFSMLYAFSE-NFVLPLSHDE 417 (613)
T ss_pred ccccCCcC-------------------CcCeeeCchHHHHHHHHHhhChhhHhhccccccHHHHHHhhh-ccccCCCCCC
Confidence 111111 112222222221111111111000000000000000000111 1236899999
Q ss_pred -----CCcCcCCCCC----chHHHHHHHHHHhCCCeeeEeCCchh------------HH----------HHHHHHHHHHH
Q 003698 691 -----GSTQGHWRFP----GGREMQGYAYILTHPGTPSVFYDHIF------------SH----------YRQEIEALLSV 739 (802)
Q Consensus 691 -----~R~~~~~~~~----~~~~klA~allltlpGiP~IYyGdE~------------~W----------l~~~~~~Li~l 739 (802)
+|+...+.++ .++.+++++++||+||+||||||+|+ +| +.+++|+|++|
T Consensus 418 ~~~g~~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k~L~~L 497 (613)
T TIGR01515 418 VVHGKKSLLNKMPGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWNDTEQLDWHLLSFPMHQGVSVFVRDLNRT 497 (613)
T ss_pred cccCcccHHHhCCCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCCCCccCCCccccCcccHHHHHHHHHHHHH
Confidence 4555555433 25789999999999999999999997 25 88999999999
Q ss_pred HHhCccccCCCe-----eEEee---CCCEEEEEEC-----CEEEEEEeCCCC
Q 003698 740 RKRNKIHCRSRV-----EIVKA---ERDVYAAIID-----EKVAMKLGPGHY 778 (802)
Q Consensus 740 Rk~~~al~~G~~-----~~l~~---~~~v~a~~r~-----~~~lvvinn~~~ 778 (802)
|+++|+|..|++ +.+.. +..+++|.|. +.++|++|.+..
T Consensus 498 r~~~paL~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~~ 549 (613)
T TIGR01515 498 YQKSKALYEHDFDPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTPV 549 (613)
T ss_pred HhhCHHhhccCCCCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCCC
Confidence 999999976544 44543 3479999882 357788887654
No 17
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.2e-47 Score=452.06 Aligned_cols=333 Identities=17% Similarity=0.218 Sum_probs=230.4
Q ss_pred CCCcceeEEeeeeecCCCCCCCHHHHHHHH-HHHHhcCCCEEEeCCCCCCC--CCCCCCCccCCccCCCCCCHHHHHHHH
Q 003698 406 TGTGFEILCQGFNWESHKSGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVV 482 (802)
Q Consensus 406 ~~~~y~~~~~~F~Wd~~~~GGdl~GI~~kL-dYLk~LGvtaI~L~PI~es~--s~hGYd~~Dy~~IDp~~Gt~edfk~LV 482 (802)
..+.|++++++|.-+....-|+|+||+++| ||||+||||+||||||++++ .+|||++.||++|||+|||++|||+||
T Consensus 147 ~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv 226 (633)
T PRK12313 147 PISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLV 226 (633)
T ss_pred CceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHH
Confidence 357899999998733222238999999995 99999999999999999987 689999999999999999999999999
Q ss_pred HHHHHcCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHH
Q 003698 483 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI 562 (802)
Q Consensus 483 ~~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i 562 (802)
++||++||+||||+|+||++.++.. ...|++...|.. . .....+ ....+.++||++||+||++|
T Consensus 227 ~~~H~~Gi~VilD~V~nH~~~~~~~----~~~~~~~~~~~~-~--------~~~~~~---~~~w~~~~~n~~~~~vr~~l 290 (633)
T PRK12313 227 DALHQNGIGVILDWVPGHFPKDDDG----LAYFDGTPLYEY-Q--------DPRRAE---NPDWGALNFDLGKNEVRSFL 290 (633)
T ss_pred HHHHHCCCEEEEEECCCCCCCCccc----ccccCCCcceee-c--------CCCCCc---CCCCCCcccCCCCHHHHHHH
Confidence 9999999999999999999976431 111222100100 0 000000 00123568999999999999
Q ss_pred HHHHHHHHhhcCCceEEeccccccc-----------------------chhHHHHHH---hcCCc-EEEEeecCCCcc--
Q 003698 563 KEWLCWLRNEIGYDGWRLDFVRGFW-----------------------GGYVKDYLE---ATEPY-FAVGEYWDSLSY-- 613 (802)
Q Consensus 563 ~~~l~~Wi~e~GIDGfRlD~a~~~~-----------------------~~f~~~~~~---~~~p~-~liGE~w~~~~~-- 613 (802)
++++++|+++|||||||||++.++- .+|++.+.+ +.+|+ ++|||.+...+-
T Consensus 291 ~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~ 370 (633)
T PRK12313 291 ISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVT 370 (633)
T ss_pred HHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcccc
Confidence 9999999999999999999886431 357777654 45677 899998754211
Q ss_pred ---ccccCCCCch---HHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeeccc
Q 003698 614 ---TYGEMDHNQD---AHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIEN 687 (802)
Q Consensus 614 ---l~g~mny~~~---~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~P~~~vnfl~n 687 (802)
.+|.|+|... .+...+..|+...... ..++.. .+. ..+ ...+.. ..++++|
T Consensus 371 ~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~-~~~~~~---~~~--------~~~----------~~~~~e-~~~l~~s 427 (633)
T PRK12313 371 GPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIY-RKYHHN---LLT--------FSF----------MYAFSE-NFVLPFS 427 (633)
T ss_pred ccccCCCCCcCceeCcHHHHHHHHHhhhCccc-cccccc---cch--------HHH----------hhhhhc-ccccCCC
Confidence 1232322110 1223333343221100 000000 000 000 000111 2257789
Q ss_pred CCC-----CCcCcCCCCCc----hHHHHHHHHHHhCCCeeeEeCCchhH------------H----------HHHHHHHH
Q 003698 688 HDT-----GSTQGHWRFPG----GREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIEAL 736 (802)
Q Consensus 688 HDt-----~R~~~~~~~~~----~~~klA~allltlpGiP~IYyGdE~~------------W----------l~~~~~~L 736 (802)
||+ +|+...+..+. .+.+++++++||+||+||||||+|++ | +++++|+|
T Consensus 428 HD~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~r~L 507 (633)
T PRK12313 428 HDEVVHGKKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEWKHDESLEWHLLEDPMNAGMQRFTSDL 507 (633)
T ss_pred CcccccCCccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccCCccCCCCccccCChhHHHHHHHHHHH
Confidence 999 56666654443 57899999999999999999999973 5 88999999
Q ss_pred HHHHHhCccccC-----CCeeEEeeC---CCEEEEEEC-----CEEEEEEeCCC
Q 003698 737 LSVRKRNKIHCR-----SRVEIVKAE---RDVYAAIID-----EKVAMKLGPGH 777 (802)
Q Consensus 737 i~lRk~~~al~~-----G~~~~l~~~---~~v~a~~r~-----~~~lvvinn~~ 777 (802)
|+||+++|+|+. ++++.+..+ +++++|.|. +.++||+|.+.
T Consensus 508 i~LRr~~paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~ 561 (633)
T PRK12313 508 NQLYKDEPALWELDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTP 561 (633)
T ss_pred HHHHHhChHhhcccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCC
Confidence 999999999974 456777653 369999882 46777778765
No 18
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.3e-46 Score=450.53 Aligned_cols=350 Identities=17% Similarity=0.225 Sum_probs=232.2
Q ss_pred CCCcceeEEeeeeecCCC-CCCCHHHHHHHH-HHHHhcCCCEEEeCCCCCCC--CCCCCCCccCCccCCCCCCHHHHHHH
Q 003698 406 TGTGFEILCQGFNWESHK-SGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDV 481 (802)
Q Consensus 406 ~~~~y~~~~~~F~Wd~~~-~GGdl~GI~~kL-dYLk~LGvtaI~L~PI~es~--s~hGYd~~Dy~~IDp~~Gt~edfk~L 481 (802)
..+.|++++++|.-+.+. .-|+|+||+++| ||||+||||+||||||++++ .+|||++.||++|||+|||++|||+|
T Consensus 241 ~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~l 320 (726)
T PRK05402 241 PISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYF 320 (726)
T ss_pred CcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHH
Confidence 457899999998743122 128999999996 99999999999999999987 57999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHH
Q 003698 482 VNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKD 561 (802)
Q Consensus 482 V~~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~ 561 (802)
|++||++||+||||+|+||++.++.. ...|++...|.. . + ...+.+..| +..++|+.||+||++
T Consensus 321 V~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~~~y~~-~----~---~~~~~~~~w----~~~~~n~~~~~v~~~ 384 (726)
T PRK05402 321 VDACHQAGIGVILDWVPAHFPKDAHG----LARFDGTALYEH-A----D---PREGEHPDW----GTLIFNYGRNEVRNF 384 (726)
T ss_pred HHHHHHCCCEEEEEECCCCCCCCccc----hhccCCCcceec-c----C---CcCCccCCC----CCccccCCCHHHHHH
Confidence 99999999999999999999876431 112222111100 0 0 000111111 224789999999999
Q ss_pred HHHHHHHHHhhcCCceEEecccccc------------------------cchhHHHHHH---hcCCc-EEEEeecCCCc-
Q 003698 562 IKEWLCWLRNEIGYDGWRLDFVRGF------------------------WGGYVKDYLE---ATEPY-FAVGEYWDSLS- 612 (802)
Q Consensus 562 i~~~l~~Wi~e~GIDGfRlD~a~~~------------------------~~~f~~~~~~---~~~p~-~liGE~w~~~~- 612 (802)
|++++++|+++|||||||||++.++ ..+||+.+.+ +.+|+ ++|||.+...+
T Consensus 385 l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~ 464 (726)
T PRK05402 385 LVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPG 464 (726)
T ss_pred HHHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcC
Confidence 9999999999999999999987543 1357777654 44687 89999654311
Q ss_pred ----cccccC--CCCch-HHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeec
Q 003698 613 ----YTYGEM--DHNQD-AHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFI 685 (802)
Q Consensus 613 ----~l~g~m--ny~~~-~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~P~~~vnfl 685 (802)
...+.+ +|..+ .+...+.+|+.... ....+... .+. . . ....+.. .++++
T Consensus 465 ~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~-~~~~~~~~---~~~-------~-~----------~~~~~~e-~~~l~ 521 (726)
T PRK05402 465 VTRPTEEGGLGFGYKWNMGWMHDTLDYMERDP-IYRKYHHN---ELT-------F-S----------LLYAYSE-NFVLP 521 (726)
T ss_pred ccccccCCCCCCCceecCCcchHHHHHHhhCc-cccccccc---chh-------H-H----------HhHhhhc-cccCC
Confidence 011111 11100 01122233332110 00000000 000 0 0 0001111 23578
Q ss_pred ccCCCC-----CcCcCCCCC----chHHHHHHHHHHhCCCeeeEeCCchh------------HH----------HHHHHH
Q 003698 686 ENHDTG-----STQGHWRFP----GGREMQGYAYILTHPGTPSVFYDHIF------------SH----------YRQEIE 734 (802)
Q Consensus 686 ~nHDt~-----R~~~~~~~~----~~~~klA~allltlpGiP~IYyGdE~------------~W----------l~~~~~ 734 (802)
+|||+. |+...+..+ .++.+++++++||+||+||||||+|+ +| ++++||
T Consensus 522 ~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k 601 (726)
T PRK05402 522 LSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREWNHDASLDWHLLDFPWHRGVQRLVR 601 (726)
T ss_pred CCCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCCCccCcCCccccCCcchHHHHHHHH
Confidence 999995 444444433 25678999999999999999999997 35 889999
Q ss_pred HHHHHHHhCccccCCC-----eeEEee---CCCEEEEEEC-----CEEEEEEeCCCCCC-----CCC-CCCeEEEEcCC
Q 003698 735 ALLSVRKRNKIHCRSR-----VEIVKA---ERDVYAAIID-----EKVAMKLGPGHYEP-----PSG-SQNWSFVTEGR 794 (802)
Q Consensus 735 ~Li~lRk~~~al~~G~-----~~~l~~---~~~v~a~~r~-----~~~lvvinn~~~~~-----~~~-~~~~~~~~~g~ 794 (802)
+|++||+++|+|+.|+ ++.+.. ++.+++|.|. +.++|++|.+.... ..+ .+.|+..+++.
T Consensus 602 ~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlvv~N~~~~~~~~y~i~~p~~g~~~~ilnsd 680 (726)
T PRK05402 602 DLNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLVVCNFTPVPRHDYRLGVPQAGRWREVLNTD 680 (726)
T ss_pred HHHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEEEEeCCCCcccceEECCCCCCeEEEEEcCc
Confidence 9999999999997654 455544 3479999983 46888888765321 011 24566666654
No 19
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=7e-45 Score=426.36 Aligned_cols=333 Identities=17% Similarity=0.169 Sum_probs=223.3
Q ss_pred CCcceeEEeeeeecCCCCCCCHHHHHHHH-HHHHhcCCCEEEeCCCCCCC--CCCCCCCccCCccCCCCCCHHHHHHHHH
Q 003698 407 GTGFEILCQGFNWESHKSGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVN 483 (802)
Q Consensus 407 ~~~y~~~~~~F~Wd~~~~GGdl~GI~~kL-dYLk~LGvtaI~L~PI~es~--s~hGYd~~Dy~~IDp~~Gt~edfk~LV~ 483 (802)
.+.|++++.+|.-...+.-|+|++++++| +|||+||||+|+||||++++ .+|||++.|||+++++|||++|||+||+
T Consensus 145 ~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~ 224 (639)
T PRK14706 145 ISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVN 224 (639)
T ss_pred cEEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHH
Confidence 57899999998732211127999999997 89999999999999999986 6799999999999999999999999999
Q ss_pred HHHHcCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHH
Q 003698 484 KFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIK 563 (802)
Q Consensus 484 ~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~ 563 (802)
+||++||+||||+|+||++.++.. ...|+|...+.. . + ...+.... | +...+|+.+|+||++|+
T Consensus 225 ~~H~~gi~VilD~v~nH~~~~~~~----l~~~dg~~~y~~-~----~---~~~g~~~~---w-~~~~~~~~~~eVr~~l~ 288 (639)
T PRK14706 225 HLHGLGIGVILDWVPGHFPTDESG----LAHFDGGPLYEY-A----D---PRKGYHYD---W-NTYIFDYGRNEVVMFLI 288 (639)
T ss_pred HHHHCCCEEEEEecccccCcchhh----hhccCCCcceec-c----C---CcCCcCCC---C-CCcccCCCCHHHHHHHH
Confidence 999999999999999999876431 112332111100 0 0 00011111 1 12248999999999999
Q ss_pred HHHHHHHhhcCCceEEeccccccc----------------------chhHHHHH---HhcCCc-EEEEeecCCCc-----
Q 003698 564 EWLCWLRNEIGYDGWRLDFVRGFW----------------------GGYVKDYL---EATEPY-FAVGEYWDSLS----- 612 (802)
Q Consensus 564 ~~l~~Wi~e~GIDGfRlD~a~~~~----------------------~~f~~~~~---~~~~p~-~liGE~w~~~~----- 612 (802)
+++++|+++|||||||+|++.+|- ..|++.+. ++.+|+ ++|||.|.+-+
T Consensus 289 ~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~ 368 (639)
T PRK14706 289 GSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVP 368 (639)
T ss_pred HHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccc
Confidence 999999999999999999987651 24666554 344687 89999987521
Q ss_pred cccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCC-CcceeecccCCCC
Q 003698 613 YTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWP-SRAVTFIENHDTG 691 (802)
Q Consensus 613 ~l~g~mny~~~~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~P-~~~vnfl~nHDt~ 691 (802)
+..|. +++..+++.....+...+.....++-.... ..+....|. .....|++|||+.
T Consensus 369 ~~~G~--------------------gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~--~lt~~~~y~~~e~~il~~SHDev 426 (639)
T PRK14706 369 TPYGL--------------------GFDYKWAMGWMNDTLAYFEQDPLWRKYHHH--KLTFFNVYRTSENYVLAISHDEV 426 (639)
T ss_pred cCCCC--------------------ccccEeccHHHHHHHHHhccCchhhhhchh--ccchhhhhhccccEecCCCCccc
Confidence 11121 111122211111111111111111100000 000000011 1122378999998
Q ss_pred CcCc-----CCCCC----chHHHHHHHHHHhCCCeeeEeCCchhH------------H----------HHHHHHHHHHHH
Q 003698 692 STQG-----HWRFP----GGREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIEALLSVR 740 (802)
Q Consensus 692 R~~~-----~~~~~----~~~~klA~allltlpGiP~IYyGdE~~------------W----------l~~~~~~Li~lR 740 (802)
+... ...++ .++++++++++||+||+|+||||+||+ | +.+++|+|++||
T Consensus 427 ~~~k~sl~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew~~~~~l~W~l~~~~~~~~l~~~~k~L~~L~ 506 (639)
T PRK14706 427 VHLKKSMVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEWNHDASLPWYLTDVPDHRGVMNLVRRLNQLY 506 (639)
T ss_pred cCCccchHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcccCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 8532 12222 356889999999999999999999984 4 888999999999
Q ss_pred HhCccccCCC-----eeEEee---CCCEEEEEEC-----CEEEEEEeCCC
Q 003698 741 KRNKIHCRSR-----VEIVKA---ERDVYAAIID-----EKVAMKLGPGH 777 (802)
Q Consensus 741 k~~~al~~G~-----~~~l~~---~~~v~a~~r~-----~~~lvvinn~~ 777 (802)
+++|+|..|+ ++.+.. ++++++|.|. +.++||+|.+.
T Consensus 507 k~~paL~~gd~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~ 556 (639)
T PRK14706 507 RERPDWHRGDKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTP 556 (639)
T ss_pred HhCHHHhhCCCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCC
Confidence 9999998776 444443 3579999992 13677777665
No 20
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=3.5e-44 Score=435.13 Aligned_cols=345 Identities=19% Similarity=0.247 Sum_probs=232.0
Q ss_pred CCCCCcceeEEeeeeecCCC------CCCCHHHHHHHHHHHHhcCCCEEEeCCCCCC--------------------CCC
Q 003698 404 PGTGTGFEILCQGFNWESHK------SGRWYMELKEKATELSSLGFSVIWLPPPTES--------------------VSP 457 (802)
Q Consensus 404 ~~~~~~y~~~~~~F~Wd~~~------~GGdl~GI~~kLdYLk~LGvtaI~L~PI~es--------------------~s~ 457 (802)
..+.+.|++++++|+.+... ..|+|+||+++|||||+||||+|||||||+. ..+
T Consensus 449 ~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~yn 528 (1111)
T TIGR02102 449 REDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYN 528 (1111)
T ss_pred ccceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccc
Confidence 45678999999999854321 2499999999999999999999999999862 135
Q ss_pred CCCCCccCCccCCCCCC--------HHHHHHHHHHHHHcCCEEEEEeccCcccccCCCCCCCCccCCCC-CCCCCCcccC
Q 003698 458 EGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGR-LNWDDRAVVA 528 (802)
Q Consensus 458 hGYd~~Dy~~IDp~~Gt--------~edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~-~~w~~~~~~~ 528 (802)
|||+|.+||+++++||+ .+|||+||++||++||+||||+|+|||+..+. |.+. ..|+..
T Consensus 529 WGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~--------f~~~~p~Yy~~---- 596 (1111)
T TIGR02102 529 WGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYI--------FEDLEPNYYHF---- 596 (1111)
T ss_pred cCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEeccccccccccc--------ccccCCCceEe----
Confidence 99999999999999998 48999999999999999999999999987543 2111 011100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEecccccccchhHHHHHH---hcCCc-EEE
Q 003698 529 DDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE---ATEPY-FAV 604 (802)
Q Consensus 529 ~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~---~~~p~-~li 604 (802)
....+.... ..+..++|.++++||++|+++++||+++|||||||||++.+++..+++.+.+ +.+|. +++
T Consensus 597 ----~~~~G~~~~---~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~dP~~~li 669 (1111)
T TIGR02102 597 ----MDADGTPRT---SFGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPNIIMI 669 (1111)
T ss_pred ----eCCCCCccc---ccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCcCEEEE
Confidence 001111100 1124579999999999999999999999999999999999988888777654 45787 899
Q ss_pred EeecCCC----cccc-----ccCCCC--chHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhch---hhhhhhhhcCCC
Q 003698 605 GEYWDSL----SYTY-----GEMDHN--QDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRC---EYWRLSDEKGKP 670 (802)
Q Consensus 605 GE~w~~~----~~l~-----g~mny~--~~~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~---~~~~l~~~~~~~ 670 (802)
||.|+.. .+.. +.|.+. ...+++.+++++.+.......- .+..+ ....+...+...
T Consensus 670 GE~W~~~~g~~~~~~~~~~~~~~~~~~~ig~FnD~~Rd~irg~~~~~~~~----------gfi~G~~~~~~~l~~~i~g~ 739 (1111)
T TIGR02102 670 GEGWRTYAGDEGDPVQAADQDWMKYTETVGVFSDDIRNELKSGFPNEGQP----------AFITGGARNVQGIFKNIKAQ 739 (1111)
T ss_pred EecccccCCCCcccccccchhhHhcCCcccEecHHHHHHHhccccccccc----------ccccCCcccHHHHHHhhcCC
Confidence 9999851 1100 001100 0112233333333210000000 00001 011111111111
Q ss_pred -CCCcCCCCCcceeecccCCCCCcCcCCCC----C----------chHHHHHHHHHHhCCCeeeEeCCchh---------
Q 003698 671 -PGVVGWWPSRAVTFIENHDTGSTQGHWRF----P----------GGREMQGYAYILTHPGTPSVFYDHIF--------- 726 (802)
Q Consensus 671 -~~~~~~~P~~~vnfl~nHDt~R~~~~~~~----~----------~~~~klA~allltlpGiP~IYyGdE~--------- 726 (802)
.......|.+.|||+++||+.++...+.. + ..+.++|.+++||++|+||||+|+||
T Consensus 740 ~~~~~~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gnnn 819 (1111)
T TIGR02102 740 PHNFEADSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFRNP 819 (1111)
T ss_pred ccccccCCcccEEEEEecCCCCchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCCcc
Confidence 11112468899999999999987543321 1 13678999999999999999999885
Q ss_pred ---------------------------------------------HH--------------HHHHHHHHHHHHHhCcccc
Q 003698 727 ---------------------------------------------SH--------------YRQEIEALLSVRKRNKIHC 747 (802)
Q Consensus 727 ---------------------------------------------~W--------------l~~~~~~Li~lRk~~~al~ 747 (802)
+| +++++|.||+|||++|+|+
T Consensus 820 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~lRk~~~~fr 899 (1111)
T TIGR02102 820 DYRTPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIELRRSTDAFR 899 (1111)
T ss_pred cccccccccccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHHHHhcCcccc
Confidence 13 5899999999999999998
Q ss_pred CCCee-------EEeeC--------CCEEEEEE----CCEEEEEEeCCC
Q 003698 748 RSRVE-------IVKAE--------RDVYAAII----DEKVAMKLGPGH 777 (802)
Q Consensus 748 ~G~~~-------~l~~~--------~~v~a~~r----~~~~lvvinn~~ 777 (802)
.++.. ++... ..+++|.. ++.++|++|...
T Consensus 900 ~~~~~~i~~~v~~~~~~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~ 948 (1111)
T TIGR02102 900 LGSKALVDRKVTLITIPGQNEIEEEDLVVAYQIVATNGDIYAVFVNADD 948 (1111)
T ss_pred ccchhhhcCcEEEECCCCCcccccCCcEEEEEEecCCCCeEEEEECCCC
Confidence 66643 22221 35667764 345666666653
No 21
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.2e-42 Score=406.62 Aligned_cols=344 Identities=19% Similarity=0.240 Sum_probs=229.7
Q ss_pred CCCCCcceeEEeeeeecCCCCCCCHHHHHHH-HHHHHhcCCCEEEeCCCCCCC--CCCCCCCccCCccCCCCCCHHHHHH
Q 003698 404 PGTGTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKD 480 (802)
Q Consensus 404 ~~~~~~y~~~~~~F~Wd~~~~GGdl~GI~~k-LdYLk~LGvtaI~L~PI~es~--s~hGYd~~Dy~~IDp~~Gt~edfk~ 480 (802)
....+.|++++++|+-+.....+++.+++++ |||||+||||+||||||++++ .+|||++.+||+++|+||+++|||+
T Consensus 244 ~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~ 323 (730)
T PRK12568 244 PAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQ 323 (730)
T ss_pred CCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHH
Confidence 3456899999999974322234699999998 599999999999999999987 5799999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHH
Q 003698 481 VVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRK 560 (802)
Q Consensus 481 LV~~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~ 560 (802)
||++||++||+||||+|+||++.+... ...|++...|... ++ ..+.. ..|.++ .+|+.+|+||+
T Consensus 324 lV~~~H~~Gi~VIlD~V~nH~~~d~~~----l~~fdg~~~Ye~~-----d~---~~g~~---~~W~~~-~~N~~~peVr~ 387 (730)
T PRK12568 324 FVDACHRAGIGVILDWVSAHFPDDAHG----LAQFDGAALYEHA-----DP---REGMH---RDWNTL-IYNYGRPEVTA 387 (730)
T ss_pred HHHHHHHCCCEEEEEeccccCCccccc----cccCCCccccccC-----CC---cCCcc---CCCCCe-ecccCCHHHHH
Confidence 999999999999999999999976431 1223332111100 00 00111 112222 58999999999
Q ss_pred HHHHHHHHHHhhcCCceEEeccccccc------------------------chhHHHHHH---hcCCc-EEEEeecCCCc
Q 003698 561 DIKEWLCWLRNEIGYDGWRLDFVRGFW------------------------GGYVKDYLE---ATEPY-FAVGEYWDSLS 612 (802)
Q Consensus 561 ~i~~~l~~Wi~e~GIDGfRlD~a~~~~------------------------~~f~~~~~~---~~~p~-~liGE~w~~~~ 612 (802)
+|++++++|+++|||||||+|++..+. .+|++++.+ +..|+ ++|||.+..-+
T Consensus 388 ~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p 467 (730)
T PRK12568 388 YLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWP 467 (730)
T ss_pred HHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCc
Confidence 999999999999999999999875431 247776544 45687 89999765321
Q ss_pred -----cccccC----CCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhh--hhhcCCCCCCcCCCCCcc
Q 003698 613 -----YTYGEM----DHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRL--SDEKGKPPGVVGWWPSRA 681 (802)
Q Consensus 613 -----~l~g~m----ny~~~~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~~~~~l--~~~~~~~~~~~~~~P~~~ 681 (802)
...|.+ .|+. .....+.+|+.... ..+- .+.+.. ++...+ +..
T Consensus 468 ~vt~p~~~gGlGFd~kwn~-gwm~d~l~y~~~dp----------------------~~r~~~h~~ltf--~~~y~~-~e~ 521 (730)
T PRK12568 468 GVTAPISDGGLGFTHKWNM-GWMHDTLHYMQRDP----------------------AERAHHHSQLTF--GLVYAF-SER 521 (730)
T ss_pred cccccccCCCCCcCcEeCC-hhHHHHHHHHhhCc----------------------hhhhhhhhhhhh--hhhhhh-hcc
Confidence 111211 1111 01222333333210 0000 000000 000001 122
Q ss_pred eeecccCCC-----CCcCcCCCCCc----hHHHHHHHHHHhCCCeeeEeCCchh------------HH----------HH
Q 003698 682 VTFIENHDT-----GSTQGHWRFPG----GREMQGYAYILTHPGTPSVFYDHIF------------SH----------YR 730 (802)
Q Consensus 682 vnfl~nHDt-----~R~~~~~~~~~----~~~klA~allltlpGiP~IYyGdE~------------~W----------l~ 730 (802)
+.+..|||. .++...+.++. +..|..++++||+||.|++|+|+|| +| +.
T Consensus 522 fvlp~SHDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~~~~ldW~ll~~~~h~~~~ 601 (730)
T PRK12568 522 FVLPLSHDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNHDQSLDWHLLDGARHRGMQ 601 (730)
T ss_pred EeccCCCcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccCCCCccccccCChhHHHHH
Confidence 356889999 45555554442 3468889999999999999999997 35 88
Q ss_pred HHHHHHHHHHHhCccccCC-----CeeEEeeC---CCEEEEEEC-----CEEEEEEeCCCCCCCCCCCCeEEEEc
Q 003698 731 QEIEALLSVRKRNKIHCRS-----RVEIVKAE---RDVYAAIID-----EKVAMKLGPGHYEPPSGSQNWSFVTE 792 (802)
Q Consensus 731 ~~~~~Li~lRk~~~al~~G-----~~~~l~~~---~~v~a~~r~-----~~~lvvinn~~~~~~~~~~~~~~~~~ 792 (802)
.++|.|++||+++|+|..+ .++++..+ ++|++|.|. +.-+|||-|.+..+ -.+|++.++
T Consensus 602 ~~~~dLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~~~---~~~Y~ig~p 673 (730)
T PRK12568 602 QLVGDLNAALRRTPALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTPQP---HHDYRVGVP 673 (730)
T ss_pred HHHHHHHHHHHhChhhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCCCC---ccCeEECCC
Confidence 8999999999999999654 45556543 369999982 13355555665555 234555444
No 22
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=5.3e-43 Score=393.10 Aligned_cols=333 Identities=15% Similarity=0.156 Sum_probs=234.4
Q ss_pred eEEeeeeecCCCCC-CCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCC
Q 003698 412 ILCQGFNWESHKSG-RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM 490 (802)
Q Consensus 412 ~~~~~F~Wd~~~~G-Gdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GI 490 (802)
+.+..|. |+..+| |+|+|++++ ||++ ||++|||+|+|+++++|||++.||++|||+|||++||++|+++ |
T Consensus 3 v~lity~-Ds~g~glgdl~g~l~~--yL~~-~v~~i~LlPffps~sD~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~ 73 (470)
T TIGR03852 3 AMLITYA-DSLGKNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTGDRGFAPMDYTEVDPAFGDWSDVEALSEK-----Y 73 (470)
T ss_pred ceEEEec-CCCCCChhhHHHHHHH--HHHH-hCCEEEECCCCcCCCCCCcCchhhceeCcccCCHHHHHHHHHh-----h
Confidence 4555665 544333 667777766 9999 7999999999999999999999999999999999999999997 8
Q ss_pred EEEEEeccCcccccCCCCC-----CCCccCCCCCC-----CCCCcccCC----------CC---C--CC-CCCCCCCCCC
Q 003698 491 KILGDVVLNHRCAHYQNQN-----GVWNIFGGRLN-----WDDRAVVAD----------DP---H--FQ-GRGNKSSGDN 544 (802)
Q Consensus 491 kVILD~V~NHt~~~~~~~~-----g~~~~f~g~~~-----w~~~~~~~~----------~~---~--f~-~~~~~~~~~~ 544 (802)
+||+|+|+||||.+|+|+. +.-++|.+.+- |.+...+.. .+ . +. +.+.+....+
T Consensus 74 kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF 153 (470)
T TIGR03852 74 YLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTF 153 (470)
T ss_pred hHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccC
Confidence 9999999999999998632 22344444321 322111000 01 1 11 1111111224
Q ss_pred CCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEecccccccc-----------h---hHHHHHHh-cCCc-EEEEeec
Q 003698 545 FHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG-----------G---YVKDYLEA-TEPY-FAVGEYW 608 (802)
Q Consensus 545 ~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~-----------~---f~~~~~~~-~~p~-~liGE~w 608 (802)
...+||||+.||.|+++|.+++++|+ +.|||||||||+..++. + +++.+.+. ..++ ++++|++
T Consensus 154 ~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~E~~ 232 (470)
T TIGR03852 154 GEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEILPEIH 232 (470)
T ss_pred CccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEEeHhh
Confidence 48899999999999999999999999 89999999999965543 2 44444442 2455 8999997
Q ss_pred CCCccccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccC
Q 003698 609 DSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENH 688 (802)
Q Consensus 609 ~~~~~l~g~mny~~~~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~P~~~vnfl~nH 688 (802)
...++ .. ...+..+++|+|++...+..++..++...+...+. ..|..++|||+||
T Consensus 233 ~~~~~-------~~-----------~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~-------~~p~~~~nfL~sH 287 (470)
T TIGR03852 233 EHYTI-------QF-----------KIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLR-------KSPMKQFTTLDTH 287 (470)
T ss_pred hhccc-------cc-----------ccccceeEEccCccchhhHHHhhccCHHHHHHHHH-------hCcccceEEeecC
Confidence 54221 00 00124567899999887777777766555544332 2355668999999
Q ss_pred CCCCc--------------------------C---------------------cCCCCCchHHHHHHHHHHhCCCeeeEe
Q 003698 689 DTGST--------------------------Q---------------------GHWRFPGGREMQGYAYILTHPGTPSVF 721 (802)
Q Consensus 689 Dt~R~--------------------------~---------------------~~~~~~~~~~klA~allltlpGiP~IY 721 (802)
|.--+ . ..++.+..++.+|.++||++||+|.||
T Consensus 288 Dgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpGiP~iY 367 (470)
T TIGR03852 288 DGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPGIPQVY 367 (470)
T ss_pred CCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCCCceEE
Confidence 99211 0 012234578899999999999999999
Q ss_pred CCchhH---------------------H------------HHHHHHHHHHHHHhCccccC-CCeeEEeeCCCEEEEEE--
Q 003698 722 YDHIFS---------------------H------------YRQEIEALLSVRKRNKIHCR-SRVEIVKAERDVYAAII-- 765 (802)
Q Consensus 722 yGdE~~---------------------W------------l~~~~~~Li~lRk~~~al~~-G~~~~l~~~~~v~a~~r-- 765 (802)
||+|++ | +..-+.+||++|+++||+.. |.+++...++.++++.|
T Consensus 368 y~~llg~~nD~~~~~rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~~~~~~~~~~~~~r~~ 447 (470)
T TIGR03852 368 YVGLLAGKNDIELLEETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSIDIETPSENQIEIVRTN 447 (470)
T ss_pred echhhcCCchHHHHHhcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceEecCCCCcEEEEEEEc
Confidence 999862 2 55556679999999999976 99887667778999877
Q ss_pred -C-CEEEEEEeCCCCC
Q 003698 766 -D-EKVAMKLGPGHYE 779 (802)
Q Consensus 766 -~-~~~lvvinn~~~~ 779 (802)
+ ++.+.++.|-+..
T Consensus 448 ~~~~~~~~~~~n~~~~ 463 (470)
T TIGR03852 448 KDGGNKAILTANLKTK 463 (470)
T ss_pred CCCCceEEEEEecCCC
Confidence 1 3445555444433
No 23
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=7.5e-42 Score=386.01 Aligned_cols=319 Identities=16% Similarity=0.155 Sum_probs=229.0
Q ss_pred eEEeeeeecCCCCCCCHHHHHHHHH-HHHhcCCCEEEeCCCCC-CC-CCCCCCCccCCccCCCCCCHHHHHHHHHHHHHc
Q 003698 412 ILCQGFNWESHKSGRWYMELKEKAT-ELSSLGFSVIWLPPPTE-SV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDV 488 (802)
Q Consensus 412 ~~~~~F~Wd~~~~GGdl~GI~~kLd-YLk~LGvtaI~L~PI~e-s~-s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~ 488 (802)
+.+-.|. |+.. +|||+||+++|| ||++| |++|||+|+|+ ++ +++||++.||++|||+|||++||++|++
T Consensus 5 ~~litY~-Ds~~-~GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L~~----- 76 (495)
T PRK13840 5 VQLITYA-DRLG-DGGLKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKALGK----- 76 (495)
T ss_pred eEEEEec-cCCC-CCCHhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHHHHh-----
Confidence 3444554 4332 489999999999 59999 99999999995 44 6899999999999999999999999985
Q ss_pred CCEEEEEeccCcccccCCCC-----CCCCccCCCCCCCCCC-----cccCC-CCCCC---C---------CC-CCCCCC-
Q 003698 489 GMKILGDVVLNHRCAHYQNQ-----NGVWNIFGGRLNWDDR-----AVVAD-DPHFQ---G---------RG-NKSSGD- 543 (802)
Q Consensus 489 GIkVILD~V~NHt~~~~~~~-----~g~~~~f~g~~~w~~~-----~~~~~-~~~f~---~---------~~-~~~~~~- 543 (802)
||+||+|+|+||||.+|+|+ ++.-++|...+-|.+. ..+.+ ...|. + .+ ....|.
T Consensus 77 giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~t 156 (495)
T PRK13840 77 THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTT 156 (495)
T ss_pred CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEecc
Confidence 99999999999999999973 3333445443333221 00000 01111 0 01 112233
Q ss_pred CCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEecccccccc-------------hhHHHHHHhcC--CcEEEEeec
Q 003698 544 NFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG-------------GYVKDYLEATE--PYFAVGEYW 608 (802)
Q Consensus 544 ~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~-------------~f~~~~~~~~~--p~~liGE~w 608 (802)
+...+||||+.||+|+++|.+++++|+ +.|||||||||+..+++ +|++.+.+.++ ...+|+|+|
T Consensus 157 F~~~QpDLN~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~Ei~ 235 (495)
T PRK13840 157 FTPQQIDIDVHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEVLVEIH 235 (495)
T ss_pred CCcccceeCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEEEEeCc
Confidence 347899999999999999999999999 78999999999976554 26666544433 226899987
Q ss_pred CCCccccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccC
Q 003698 609 DSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENH 688 (802)
Q Consensus 609 ~~~~~l~g~mny~~~~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~P~~~vnfl~nH 688 (802)
.... .. ..+ .+..+++|+|++...+..++..++...+...+. ..|..++|||+||
T Consensus 236 ~y~~----------~~--~~~------~~e~~~vYnF~Lp~ll~~aL~~~~~~~L~~~l~-------~~p~~~~n~L~~H 290 (495)
T PRK13840 236 SYYK----------TQ--IEI------AKKVDRVYDFALPPLILHTLFTGDVEALAHWLE-------IRPRNAVTVLDTH 290 (495)
T ss_pred cccC----------cc--ccc------cccccEEecchhhHHHHHHHHhCCchHHHHHHH-------hCCCccEEeeecC
Confidence 6421 00 000 125678999999988888877766555443322 2377778999999
Q ss_pred CCCCc----------CcCC--------------------------------------------CCCchHHHHHHHHHHhC
Q 003698 689 DTGST----------QGHW--------------------------------------------RFPGGREMQGYAYILTH 714 (802)
Q Consensus 689 Dt~R~----------~~~~--------------------------------------------~~~~~~~klA~allltl 714 (802)
|.-.+ ...+ +.+..++.+|.+++|++
T Consensus 291 DgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~~ 370 (495)
T PRK13840 291 DGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFFA 370 (495)
T ss_pred CCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHcC
Confidence 99665 1111 01234788999999999
Q ss_pred CCeeeEeCCchhH-----------------------H----------HHHHHHHHHHHHHhCccccCCCeeEEeeCCCEE
Q 003698 715 PGTPSVFYDHIFS-----------------------H----------YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVY 761 (802)
Q Consensus 715 pGiP~IYyGdE~~-----------------------W----------l~~~~~~Li~lRk~~~al~~G~~~~l~~~~~v~ 761 (802)
||||.||||++++ | +++.+++||++|+++||| .|+++....++..+
T Consensus 371 ~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF-~~~~~~~~~~~~~~ 449 (495)
T PRK13840 371 PGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAF-DGAFSYAADGDTSL 449 (495)
T ss_pred CCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CceEEEecCCCCeE
Confidence 9999999999862 3 888899999999999999 58887765555555
Q ss_pred EEEE
Q 003698 762 AAII 765 (802)
Q Consensus 762 a~~r 765 (802)
+..+
T Consensus 450 ~~~~ 453 (495)
T PRK13840 450 TLSW 453 (495)
T ss_pred EEEE
Confidence 5444
No 24
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-42 Score=398.28 Aligned_cols=363 Identities=19% Similarity=0.253 Sum_probs=232.0
Q ss_pred hhhhhhccccccCCCcccccccccCCCCCCCCCCCCCcceeEEeeeeecCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCC
Q 003698 372 AEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPP 451 (802)
Q Consensus 372 av~YqIf~drf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~F~Wd~~~~GGdl~GI~~kLdYLk~LGvtaI~L~PI 451 (802)
+++|||+||||+.++.++ .+.++ .+|||+||+++||||++|||++|||+||
T Consensus 1 ~viyqi~~~~f~d~~~~~--------------------------~~~~~---G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi 51 (505)
T COG0366 1 AVIYQIYPDRFADSNGSN--------------------------GPDYD---GGGDLKGITEKLDYLKELGVDAIWLSPI 51 (505)
T ss_pred CcEEEEechhhcCCCCCC--------------------------ccCCC---CcccHHhHHHhhhHHHHhCCCEEEeCCC
Confidence 579999999999887543 11111 1499999999999999999999999999
Q ss_pred CCC-CCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccccCCCCCCCC----ccCC-CCCCCCCCc
Q 003698 452 TES-VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVW----NIFG-GRLNWDDRA 525 (802)
Q Consensus 452 ~es-~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~~~g~~----~~f~-g~~~w~~~~ 525 (802)
+++ ..+|||++.||+.|||+|||++||++||++||++||+||+|+|+||++.+|+++.... .+.. ..+.|....
T Consensus 52 ~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~ 131 (505)
T COG0366 52 FESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPD 131 (505)
T ss_pred CCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCc
Confidence 999 6999999999999999999999999999999999999999999999999998422111 0111 113343211
Q ss_pred -----ccCCCCCCCCCCC-------CCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEecccccccc-----
Q 003698 526 -----VVADDPHFQGRGN-------KSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG----- 588 (802)
Q Consensus 526 -----~~~~~~~f~~~~~-------~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~----- 588 (802)
.......|.+..+ +..+.+...+||||+.||+||+++.+++++|+ ++||||||+|++++++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~-~~gvDGfRlDa~~~~~~~~~~~ 210 (505)
T COG0366 132 PDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWL-DKGVDGFRLDAAKHISKDFGLP 210 (505)
T ss_pred ccCCCCCcchhhcCCCCCCcCCCCceEEEecCCCCCCcCCCCHHHHHHHHHHHHHHH-HcCCCeEEeccHhhhccccCCC
Confidence 0011122222221 22233458899999999999999999999999 69999999999999987
Q ss_pred ------hhHHHHHHh---cCCc-EEEEeecCCCccccc------cCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHH
Q 003698 589 ------GYVKDYLEA---TEPY-FAVGEYWDSLSYTYG------EMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILH 652 (802)
Q Consensus 589 ------~f~~~~~~~---~~p~-~liGE~w~~~~~l~g------~mny~~~~~~~~i~~~~~~~~~~~~~fdf~l~~~l~ 652 (802)
.++..+.+. .++. +..++.+.......+ .+++.. ... .....|++.....-.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---------~~~~~~~~~~~~~~~ 278 (505)
T COG0366 211 PSEENLTFLEEIHEYLREENPDVLIYGEAITDVGEAPGAVKEDFADNTSF---TNP---------ELSMLFDFSHVGLDF 278 (505)
T ss_pred CcccccccHHHHHHHHHHHHHHHHhcCcceeeeeccccccchhhhhccch---hhh---------hHhhccccccccccc
Confidence 445444332 2222 222233332211111 111110 000 111222222210000
Q ss_pred H---hhhchhhhhhhhhcCCCCCCcCCCCCcceeecccCCCCCcCcCCCCCc----hHHHHHHHHHHhCCCeeeEeCCch
Q 003698 653 S---ALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPG----GREMQGYAYILTHPGTPSVFYDHI 725 (802)
Q Consensus 653 ~---~~~~~~~~~l~~~~~~~~~~~~~~P~~~vnfl~nHDt~R~~~~~~~~~----~~~klA~allltlpGiP~IYyGdE 725 (802)
. .............+...... .......|+.|||++|+.+....+. ...++++++++++||+|+||||+|
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~hD~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~iy~G~e 355 (505)
T COG0366 279 EALAPLDAEELKEILADWPLAVNL---NDGWNNLFLSNHDQPRLLSRFGDDVGGRDASAKLLAALLFLLPGTPFIYYGDE 355 (505)
T ss_pred cccCcccHHHHHHHHHHHHhhhcc---ccCchhhhhhhcCccceeeeccCCccchHHHHHHHHHHHHhCCCCcEEecccc
Confidence 0 00000000000000000000 0011234799999999999876554 567888889999999999999986
Q ss_pred h---------------------------------H---------------H------------------------HHHHH
Q 003698 726 F---------------------------------S---------------H------------------------YRQEI 733 (802)
Q Consensus 726 ~---------------------------------~---------------W------------------------l~~~~ 733 (802)
. . | ++.++
T Consensus 356 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~ 435 (505)
T COG0366 356 LGLTNFKDPPIKYYDDVELDSIILLSRDGCRTPMPWDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFY 435 (505)
T ss_pred cCCCCCCCcchhhhchhhhhhhhhccccCCCCCcCCCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHH
Confidence 2 0 1 77899
Q ss_pred HHHHHHHHhCc-cccCCCeeEEeeCC--CEEEEEEC--CEEEEEEeCCCCC
Q 003698 734 EALLSVRKRNK-IHCRSRVEIVKAER--DVYAAIID--EKVAMKLGPGHYE 779 (802)
Q Consensus 734 ~~Li~lRk~~~-al~~G~~~~l~~~~--~v~a~~r~--~~~lvvinn~~~~ 779 (802)
++|+++|+.+. .+..|......... .++++.|. ++.+++++|.+..
T Consensus 436 ~~l~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 486 (505)
T COG0366 436 RRLIALRKQHSALLANGEDFVLLADDDPSLLAFLRESGGETLLVVNNLSEE 486 (505)
T ss_pred HHHHHHHHhhhhhhcCcccceecCCCCceEEEEecccCCceEEEEEcCCCc
Confidence 99999999994 55566444443333 68888883 4446666666543
No 25
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.2e-41 Score=411.45 Aligned_cols=329 Identities=18% Similarity=0.242 Sum_probs=218.4
Q ss_pred CCCcceeEEeeeeecCCCCCCCHHHHHHH-HHHHHhcCCCEEEeCCCCCCC--CCCCCCCccCCccCCCCCCHHHHHHHH
Q 003698 406 TGTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVV 482 (802)
Q Consensus 406 ~~~~y~~~~~~F~Wd~~~~GGdl~GI~~k-LdYLk~LGvtaI~L~PI~es~--s~hGYd~~Dy~~IDp~~Gt~edfk~LV 482 (802)
..+.|++++.+|+ .+++|++++++ |||||+||||+||||||++++ .+|||+++|||+++++|||++|||+||
T Consensus 747 p~~IYEvHvgsf~-----~~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lV 821 (1224)
T PRK14705 747 PMSVYEVHLGSWR-----LGLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLV 821 (1224)
T ss_pred CcEEEEEEecccc-----cCCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHH
Confidence 4689999999987 26889999988 599999999999999999987 679999999999999999999999999
Q ss_pred HHHHHcCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHH
Q 003698 483 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI 562 (802)
Q Consensus 483 ~~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i 562 (802)
++||++||+||||+|+||++.+... ...|+|...|.. . ++. .+... .| +...+|+.+++||++|
T Consensus 822 d~~H~~GI~VILD~V~nH~~~d~~~----l~~fdg~~~y~~-~----d~~---~g~~~---~W-g~~~fn~~~~eVr~fl 885 (1224)
T PRK14705 822 DSLHQAGIGVLLDWVPAHFPKDSWA----LAQFDGQPLYEH-A----DPA---LGEHP---DW-GTLIFDFGRTEVRNFL 885 (1224)
T ss_pred HHHHHCCCEEEEEeccccCCcchhh----hhhcCCCccccc-C----Ccc---cCCCC---CC-CCceecCCCHHHHHHH
Confidence 9999999999999999999865321 112222111100 0 000 01111 11 2346999999999999
Q ss_pred HHHHHHHHhhcCCceEEecccccc------------------------cchhHHHHHHh---cCCc-EEEEeecCCCc--
Q 003698 563 KEWLCWLRNEIGYDGWRLDFVRGF------------------------WGGYVKDYLEA---TEPY-FAVGEYWDSLS-- 612 (802)
Q Consensus 563 ~~~l~~Wi~e~GIDGfRlD~a~~~------------------------~~~f~~~~~~~---~~p~-~liGE~w~~~~-- 612 (802)
+++++||+++|||||||+|++.+| ...|++++.+. ..|. ++|+|.+..-+
T Consensus 886 i~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~v 965 (1224)
T PRK14705 886 VANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGV 965 (1224)
T ss_pred HHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCc
Confidence 999999999999999999998765 12477765543 3677 89999876521
Q ss_pred ---cccccC--C--CCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeec
Q 003698 613 ---YTYGEM--D--HNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFI 685 (802)
Q Consensus 613 ---~l~g~m--n--y~~~~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~P~~~vnfl 685 (802)
...|.+ + |+-+ ....+.+|+.... ....++. ..+ ...+... + ...+.+.
T Consensus 966 t~p~~~GGlGFd~kWnmg-wmhd~l~Y~~~dp-~~r~~~~---~~l--------tf~~~ya----------~-~e~fvl~ 1021 (1224)
T PRK14705 966 TAPTSHGGLGFGLKWNMG-WMHDSLKYASEDP-INRKWHH---GTI--------TFSLVYA----------F-TENFLLP 1021 (1224)
T ss_pred cccccCCCccCCcEecch-hhHHHHHHhhhCc-chhhccc---chH--------HHHHHHH----------h-hcCEecc
Confidence 112211 1 1111 1122333433210 0000000 000 0000000 0 1112345
Q ss_pred ccCCCCC-----cCcCCCCC----chHHHHHHHHHHhCCCeeeEeCCchhH------------H----------HHHHHH
Q 003698 686 ENHDTGS-----TQGHWRFP----GGREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIE 734 (802)
Q Consensus 686 ~nHDt~R-----~~~~~~~~----~~~~klA~allltlpGiP~IYyGdE~~------------W----------l~~~~~ 734 (802)
.|||... +...+.++ ....+.+++++|++||+|+||||+||+ | +..++|
T Consensus 1022 ~SHDevvhgk~sl~~km~Gd~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew~~~~~LdW~ll~~~~h~~~~~~~r 1101 (1224)
T PRK14705 1022 ISHDEVVHGKGSMLRKMPGDRWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEWSEQHGLDWFLADIPAHRGIQLLTK 1101 (1224)
T ss_pred cccccccccchhHHHhCCCcHHHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCccccccCCCcccCChhhHHHHHHHH
Confidence 6899742 12222222 134688899999999999999999983 5 888999
Q ss_pred HHHHHHHhCccccCC-----CeeEEee---CCCEEEEEEC----CEEEEEEeCCCCCC
Q 003698 735 ALLSVRKRNKIHCRS-----RVEIVKA---ERDVYAAIID----EKVAMKLGPGHYEP 780 (802)
Q Consensus 735 ~Li~lRk~~~al~~G-----~~~~l~~---~~~v~a~~r~----~~~lvvinn~~~~~ 780 (802)
.|++||+++|+|..+ .++++.. +++|++|.|. +.++|++ |.+..+
T Consensus 1102 dLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~-Nftp~~ 1158 (1224)
T PRK14705 1102 DLNELYTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAI-NFSGGP 1158 (1224)
T ss_pred HHHHHHhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEE-cCCCCC
Confidence 999999999999643 4556643 3579999982 3444444 554444
No 26
>PLN02960 alpha-amylase
Probab=100.00 E-value=2.2e-40 Score=387.43 Aligned_cols=333 Identities=17% Similarity=0.173 Sum_probs=217.0
Q ss_pred CCCcceeEEeeeeecCCCCCCCHHHHHHH-HHHHHhcCCCEEEeCCCCCCC--CCCCCCCccCCccCCCCCCHHHHHHHH
Q 003698 406 TGTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVV 482 (802)
Q Consensus 406 ~~~~y~~~~~~F~Wd~~~~GGdl~GI~~k-LdYLk~LGvtaI~L~PI~es~--s~hGYd~~Dy~~IDp~~Gt~edfk~LV 482 (802)
..+.|++++..|. ....-|+|++++++ |||||+||||+||||||++++ .+|||+++|||+|+++|||++|||+||
T Consensus 395 ~~vIYElHvg~~~--~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LV 472 (897)
T PLN02960 395 SLRIYECHVGISG--SEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLV 472 (897)
T ss_pred CcEEEEEeccccc--CCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHH
Confidence 4578999998654 22223899999976 999999999999999999877 679999999999999999999999999
Q ss_pred HHHHHcCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCC-CCCCCCCCCCCCCCCcccCCChHHHHH
Q 003698 483 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKD 561 (802)
Q Consensus 483 ~~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~-~~~~~~~~~~~~~lpdln~~np~Vr~~ 561 (802)
++||++||+||||+|+||++.++.. + ...|+|..++ +|. +...+. ...+...+|+.+++||+|
T Consensus 473 d~aH~~GI~VILDvV~NH~~~d~~~--~-L~~FDG~~~~----------Yf~~~~~g~~---~~WG~~~fNy~~~eVr~f 536 (897)
T PLN02960 473 DEAHGLGLLVFLDIVHSYAAADEMV--G-LSLFDGSNDC----------YFHSGKRGHH---KRWGTRMFKYGDHEVLHF 536 (897)
T ss_pred HHHHHCCCEEEEEecccccCCcccc--c-hhhcCCCccc----------eeecCCCCcc---CCCCCcccCCCCHHHHHH
Confidence 9999999999999999999987531 1 1123331111 111 100011 112346799999999999
Q ss_pred HHHHHHHHHhhcCCceEEeccccccc-------------------------chhHHHHH---HhcCCc-EEEEeecCCCc
Q 003698 562 IKEWLCWLRNEIGYDGWRLDFVRGFW-------------------------GGYVKDYL---EATEPY-FAVGEYWDSLS 612 (802)
Q Consensus 562 i~~~l~~Wi~e~GIDGfRlD~a~~~~-------------------------~~f~~~~~---~~~~p~-~liGE~w~~~~ 612 (802)
|+++++||+++|||||||+|++..|- ..|++.+. .+..|. ++|+|....-+
T Consensus 537 Llsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P 616 (897)
T PLN02960 537 LLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYP 616 (897)
T ss_pred HHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCC
Confidence 99999999999999999999986521 01444433 233566 89999765421
Q ss_pred c-----ccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhch--hhhhhhhhcCCCCCCcCCCCCcceeec
Q 003698 613 Y-----TYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRC--EYWRLSDEKGKPPGVVGWWPSRAVTFI 685 (802)
Q Consensus 613 ~-----l~g~mny~~~~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~--~~~~l~~~~~~~~~~~~~~P~~~vnfl 685 (802)
- .+|.+. ++...++.....+..++... ..+.......... .....+.+.++|+
T Consensus 617 ~vt~P~~~GGLG-------------------FDYkwnmG~~~d~l~~l~~~~~r~~~~~~l~~s~~-~~~~~~~~~v~Y~ 676 (897)
T PLN02960 617 GLCEPTSQGGLG-------------------FDYYVNLSPSEMWLSLLENVPDQEWSMSKIVSTLV-KNKENADKMLSYA 676 (897)
T ss_pred CccccCCCCCCC-------------------cccccCCCcHHHHHHHHHhCcCCCCChhccEeeec-cCcCCcceEEEEe
Confidence 1 111111 11111111111111111110 0011111100000 0123456789999
Q ss_pred ccCCC-----CCcCcCCCCC-------ch----------HHHHHHHHHHhCCCeeeEeCCchh-----------------
Q 003698 686 ENHDT-----GSTQGHWRFP-------GG----------REMQGYAYILTHPGTPSVFYDHIF----------------- 726 (802)
Q Consensus 686 ~nHDt-----~R~~~~~~~~-------~~----------~~klA~allltlpGiP~IYyGdE~----------------- 726 (802)
+|||. .++...+... .. ....+++++++ ||+|++|||+||
T Consensus 677 EnHDQVv~Gkrsl~~rL~g~~~~k~~~~~~~~lRa~al~~~~rllt~~~~-Pg~pLlFMG~EFGh~e~~~~PdP~n~~tf 755 (897)
T PLN02960 677 ENHNQSISGGKSFAEILLGKNKESSPAVKELLLRGVSLHKMIRLITFTLG-GSAYLNFMGNEFGHPERVEFPRASNNFSF 755 (897)
T ss_pred cCcCccccCcccHHHHCCCchhhhhcccChhhhhhhhHHHHHHHHHHHhC-CCCCEeeCccccCChhhhhCcCCCCcccc
Confidence 99999 2222222211 01 11123445554 899999999975
Q ss_pred -----HH----------HHHHHHHHHHHHHhCccccCCCeeEEeeC--CCEEEEEECCEEEEEEeCCCC
Q 003698 727 -----SH----------YRQEIEALLSVRKRNKIHCRSRVEIVKAE--RDVYAAIIDEKVAMKLGPGHY 778 (802)
Q Consensus 727 -----~W----------l~~~~~~Li~lRk~~~al~~G~~~~l~~~--~~v~a~~r~~~~lvvinn~~~ 778 (802)
+| +.+++|.|++||+++|+|..|...+...+ +.|++|.|+ .+++|+|.+..
T Consensus 756 ~~s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R~-~llvV~NFsp~ 823 (897)
T PLN02960 756 SLANRRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTRG-PLLFAFNFHPT 823 (897)
T ss_pred ccccCCcccccChhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEeC-CeEEEEeCCCC
Confidence 25 88899999999999999987776655443 469999995 46677776643
No 27
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=1.9e-40 Score=395.93 Aligned_cols=348 Identities=16% Similarity=0.208 Sum_probs=231.4
Q ss_pred CCCCCcceeEEeeeeecCC----CCCCCHHHHHHH-------HHHHHhcCCCEEEeCCCCCCC-----------------
Q 003698 404 PGTGTGFEILCQGFNWESH----KSGRWYMELKEK-------ATELSSLGFSVIWLPPPTESV----------------- 455 (802)
Q Consensus 404 ~~~~~~y~~~~~~F~Wd~~----~~GGdl~GI~~k-------LdYLk~LGvtaI~L~PI~es~----------------- 455 (802)
..+.+.||+++++|+.... .+.|+|.|++++ |+||++||||+|+|||||+..
T Consensus 250 ~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~ 329 (898)
T TIGR02103 250 FADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFS 329 (898)
T ss_pred CcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchh
Confidence 3467899999999985322 345999998875 777778899999999999752
Q ss_pred -----------------------------------------------CCCCCCCccCCccCCCCCCH-------HHHHHH
Q 003698 456 -----------------------------------------------SPEGYMPRDLYNLSSRYGNI-------DELKDV 481 (802)
Q Consensus 456 -----------------------------------------------s~hGYd~~Dy~~IDp~~Gt~-------edfk~L 481 (802)
.||||+|..|+.++++|++. .|||+|
T Consensus 330 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~m 409 (898)
T TIGR02103 330 KLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFREM 409 (898)
T ss_pred hhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHHH
Confidence 27999999999999999984 699999
Q ss_pred HHHHHHcCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHH
Q 003698 482 VNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKD 561 (802)
Q Consensus 482 V~~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~ 561 (802)
|++||++||+||||+|+|||+..++..... ++...+|+... ....+.. ....++.+++.++++||++
T Consensus 410 V~alH~~Gi~VIlDVVyNHt~~~g~~~~s~---ld~~~P~YY~r-------~~~~G~~---~n~~~~~d~a~e~~~Vrk~ 476 (898)
T TIGR02103 410 VQALNKTGLNVVMDVVYNHTNASGPNDRSV---LDKIVPGYYHR-------LNEDGGV---ENSTCCSNTATEHRMMAKL 476 (898)
T ss_pred HHHHHHCCCEEEEEeecccccccCccCccc---ccccCcHhhEe-------eCCCCCe---ecCCCCcCCCCCCHHHHHH
Confidence 999999999999999999999876532211 21111111000 0011111 1223456789999999999
Q ss_pred HHHHHHHHHhhcCCceEEecccccccchhHHHHHHh---cCCc-EEEEeecCCCc------ccc---cc-----CCCCch
Q 003698 562 IKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEA---TEPY-FAVGEYWDSLS------YTY---GE-----MDHNQD 623 (802)
Q Consensus 562 i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~~---~~p~-~liGE~w~~~~------~l~---g~-----mny~~~ 623 (802)
|++++++|+++|||||||||++++++.+|++++.++ ++|+ |++||.|+... +.. .. +.+..|
T Consensus 477 iiDsl~~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~~~ig~FnD 556 (898)
T TIGR02103 477 IVDSLVVWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQLNLAGTGIGTFSD 556 (898)
T ss_pred HHHHHHHHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhccccCCCCeEEecc
Confidence 999999999999999999999999999999887654 5778 89999998521 111 11 234445
Q ss_pred HHHHHHHHH--Hhh------cCCCcccc-cch----------------hhHHHHHhhhchhh--hhhhhh---------c
Q 003698 624 AHRQRIIDW--INA------ASGTAGAF-DVT----------------TKGILHSALDRCEY--WRLSDE---------K 667 (802)
Q Consensus 624 ~~~~~i~~~--~~~------~~~~~~~f-df~----------------l~~~l~~~~~~~~~--~~l~~~---------~ 667 (802)
.+|++|+.- +.. ..|+.+.. ..+ ....++..+.+ +. +.+... .
T Consensus 557 ~~RDavrGg~~f~~~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~G-nl~~~~~~~~~g~~~~g~~~ 635 (898)
T TIGR02103 557 RLRDAVRGGGPFDSGDALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAG-NLKDFVLTDHEGKVVTGEEL 635 (898)
T ss_pred chhhHhcCCCccccccccccCcceecCcccCCcccccccchhhhhhhhhHHHHHHhhcC-cccccccccccccccccccc
Confidence 556666531 110 11111110 000 00111111111 11 000000 0
Q ss_pred CC--CCCCcCCCCCcceeecccCCCCCcCcCCC----C--C----chHHHHHHHHHHhCCCeeeEeCCchh---------
Q 003698 668 GK--PPGVVGWWPSRAVTFIENHDTGSTQGHWR----F--P----GGREMQGYAYILTHPGTPSVFYDHIF--------- 726 (802)
Q Consensus 668 ~~--~~~~~~~~P~~~vnfl~nHDt~R~~~~~~----~--~----~~~~klA~allltlpGiP~IYyGdE~--------- 726 (802)
.. .+.-....|.+.|||++.||+..+...+. . . .++.++|++++|+.+|+|+|+.|+||
T Consensus 636 ~y~g~~~~ya~~P~e~inYvs~HDN~TL~D~l~~~~~~~~~~~~r~r~~~la~a~~~lsQGipF~haG~E~lRSK~~~~n 715 (898)
T TIGR02103 636 DYNGAPAGYAADPTETINYVSKHDNQTLWDAISYKAAAETPSAERVRMQAVSLSTVMLGQGIPFFHAGSELLRSKSFDRD 715 (898)
T ss_pred ccCcCccccccCHHHheeeeeccCCccHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchHhhcCCCCCCC
Confidence 00 00011235778999999999987644321 1 1 13347899999999999999999996
Q ss_pred -----------H---------------------H---------------------HHHHHHHHHHHHHhCccccCCCe--
Q 003698 727 -----------S---------------------H---------------------YRQEIEALLSVRKRNKIHCRSRV-- 751 (802)
Q Consensus 727 -----------~---------------------W---------------------l~~~~~~Li~lRk~~~al~~G~~-- 751 (802)
+ | +.++++.||+||+++|+|+-++.
T Consensus 716 SY~sgD~~N~vdw~~~~~~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~~~ 795 (898)
T TIGR02103 716 SYDSGDWFNRVDFSGQDNNWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTAAE 795 (898)
T ss_pred CCcCchhhheecccccccccccCCCcccccccchhhhcccccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCHHH
Confidence 1 2 58999999999999999985543
Q ss_pred -----eEEeeC----CCEEEEEE
Q 003698 752 -----EIVKAE----RDVYAAII 765 (802)
Q Consensus 752 -----~~l~~~----~~v~a~~r 765 (802)
.++... .+++++..
T Consensus 796 I~~~v~F~~~g~~~~~g~i~~~i 818 (898)
T TIGR02103 796 VMKRVDFRNTGPDQIPGLIVMSI 818 (898)
T ss_pred HHhheEEeccCCcCCCCEEEEEE
Confidence 333332 47888865
No 28
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=3.2e-38 Score=370.01 Aligned_cols=329 Identities=17% Similarity=0.220 Sum_probs=216.7
Q ss_pred CCcceeEEeeeeecCCCCCCCHHHHH-HHHHHHHhcCCCEEEeCCCCCCC--CCCCCCCccCCccCCCCCCHHHHHHHHH
Q 003698 407 GTGFEILCQGFNWESHKSGRWYMELK-EKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVN 483 (802)
Q Consensus 407 ~~~y~~~~~~F~Wd~~~~GGdl~GI~-~kLdYLk~LGvtaI~L~PI~es~--s~hGYd~~Dy~~IDp~~Gt~edfk~LV~ 483 (802)
...|++++..+. ....-|++++++ ++|+|||+||||+||||||++++ .+|||++.||++++++|||++|||+||+
T Consensus 230 ~~IYE~Hvg~~~--~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd 307 (758)
T PLN02447 230 LRIYEAHVGMSS--EEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLID 307 (758)
T ss_pred CEEEEEeCCccc--CCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHH
Confidence 467888887553 222238999975 56999999999999999999987 5799999999999999999999999999
Q ss_pred HHHHcCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHH
Q 003698 484 KFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIK 563 (802)
Q Consensus 484 ~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~ 563 (802)
+||++||+||||+|+||++.++.. | ...|++. ...+|.... ..+....+...+|+.+++||++|+
T Consensus 308 ~aH~~GI~VilDvV~nH~~~~~~~--g-l~~fDg~----------~~~Yf~~~~--~g~~~~w~~~~~N~~~~eVr~fLl 372 (758)
T PLN02447 308 KAHSLGLRVLMDVVHSHASKNTLD--G-LNGFDGT----------DGSYFHSGP--RGYHWLWDSRLFNYGNWEVLRFLL 372 (758)
T ss_pred HHHHCCCEEEEEeccccccccccc--c-ccccCCC----------CccccccCC--CCCcCcCCCceecCCCHHHHHHHH
Confidence 999999999999999999976531 1 1122221 011222111 001111233469999999999999
Q ss_pred HHHHHHHhhcCCceEEeccccccc-------ch-------------------hHHHH---HHhcCCc-EEEEeecCCCcc
Q 003698 564 EWLCWLRNEIGYDGWRLDFVRGFW-------GG-------------------YVKDY---LEATEPY-FAVGEYWDSLSY 613 (802)
Q Consensus 564 ~~l~~Wi~e~GIDGfRlD~a~~~~-------~~-------------------f~~~~---~~~~~p~-~liGE~w~~~~~ 613 (802)
+++++|+++|||||||||++.+|- .+ |++.+ +.+..|. ++|||.+.+-+-
T Consensus 373 ~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~ 452 (758)
T PLN02447 373 SNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPT 452 (758)
T ss_pred HHHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Confidence 999999999999999999997652 11 34433 3344677 899998765221
Q ss_pred -----ccccCCCCch---HHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCc-CCCCCcceee
Q 003698 614 -----TYGEMDHNQD---AHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVV-GWWPSRAVTF 684 (802)
Q Consensus 614 -----l~g~mny~~~---~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~P~~~vnf 684 (802)
..|.+.+... ...+...+|+.... ...|.+..... ++. .+|..+.|.|
T Consensus 453 l~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~--------------------d~~~~~~~l~~---sl~~r~~~E~~I~y 509 (758)
T PLN02447 453 LCRPVQEGGVGFDYRLAMAIPDKWIELLKEKR--------------------DEDWSMGDIVH---TLTNRRYTEKCVAY 509 (758)
T ss_pred ccccCCCCcCCcceEECCccchHHHHHHhhCC--------------------CcccCHHHHHH---HHhcccccCceEec
Confidence 1121111100 00112222332210 01111111100 011 1355678899
Q ss_pred cccCCCCCcC--c------------CCCCC-c-----h----HHHHHHHHHHhCCCe-eeEeCCchhH------------
Q 003698 685 IENHDTGSTQ--G------------HWRFP-G-----G----REMQGYAYILTHPGT-PSVFYDHIFS------------ 727 (802)
Q Consensus 685 l~nHDt~R~~--~------------~~~~~-~-----~----~~klA~allltlpGi-P~IYyGdE~~------------ 727 (802)
.+|||....- + .+... . . ..|+..+++|++||. +++|+|.||+
T Consensus 510 ~eSHDevv~Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~~n 589 (758)
T PLN02447 510 AESHDQALVGDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPREGN 589 (758)
T ss_pred cCCcCeeecCcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCccccc
Confidence 9999996541 1 11110 0 1 125566789999999 7999999863
Q ss_pred ----------H------------HHHHHHHHHHHHHhCccccCCCeeEEe--eCCCEEEEEECCEEEEEEeCC
Q 003698 728 ----------H------------YRQEIEALLSVRKRNKIHCRSRVEIVK--AERDVYAAIIDEKVAMKLGPG 776 (802)
Q Consensus 728 ----------W------------l~~~~~~Li~lRk~~~al~~G~~~~l~--~~~~v~a~~r~~~~lvvinn~ 776 (802)
| |.+|+|.|++|++++++|..|..-+.. .++.|++|.|++ +++|+|-.
T Consensus 590 ~ws~~~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~~~Viaf~R~~-ll~V~NF~ 661 (758)
T PLN02447 590 GWSYDKCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFERGD-LVFVFNFH 661 (758)
T ss_pred ccCcccccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCCCCEEEEEeCC-eEEEEeCC
Confidence 3 777999999999999999866544433 344899999975 44444443
No 29
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=1.6e-38 Score=378.09 Aligned_cols=349 Identities=15% Similarity=0.168 Sum_probs=227.3
Q ss_pred CCCCCcceeEEeeeeecCC----CCCCCHHHHHHH-------HHHHHhcCCCEEEeCCCCCCC-----------------
Q 003698 404 PGTGTGFEILCQGFNWESH----KSGRWYMELKEK-------ATELSSLGFSVIWLPPPTESV----------------- 455 (802)
Q Consensus 404 ~~~~~~y~~~~~~F~Wd~~----~~GGdl~GI~~k-------LdYLk~LGvtaI~L~PI~es~----------------- 455 (802)
..+.+.||+++++|+-... .+.|+|.|++++ |+|||+||||+|+|||+|+..
T Consensus 337 ~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l 416 (970)
T PLN02877 337 FSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKEL 416 (970)
T ss_pred CcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchh
Confidence 3467899999999985322 245999998876 777777799999999999852
Q ss_pred ----------------------CCCCCCCccCCccCCCCCCH-------HHHHHHHHHHHHcCCEEEEEeccCcccccCC
Q 003698 456 ----------------------SPEGYMPRDLYNLSSRYGNI-------DELKDVVNKFHDVGMKILGDVVLNHRCAHYQ 506 (802)
Q Consensus 456 ----------------------s~hGYd~~Dy~~IDp~~Gt~-------edfk~LV~~aH~~GIkVILD~V~NHt~~~~~ 506 (802)
.||||+|..|++++++|+|. .|||+||++||++||+||||+|+|||+..++
T Consensus 417 ~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~ 496 (970)
T PLN02877 417 EKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGP 496 (970)
T ss_pred ccccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCC
Confidence 67999999999999999983 4899999999999999999999999987654
Q ss_pred CCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEecccccc
Q 003698 507 NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 586 (802)
Q Consensus 507 ~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~ 586 (802)
+... +.++...+++... .+..+.. ....+..+.+.++++||++|+++++||+++|||||||||+|+++
T Consensus 497 ~~~~--s~ld~~vP~YY~r-------~~~~G~~---~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i 564 (970)
T PLN02877 497 FDEN--SVLDKIVPGYYLR-------RNSDGFI---ENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHL 564 (970)
T ss_pred cchh--hcccCCCCCceEE-------ECCCCCc---ccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccc
Confidence 2111 1121111110000 0111111 11234556788999999999999999999999999999999999
Q ss_pred cchhHHHHH---Hhc--------CCc-EEEEeecCCCcc---------ccc-----cCCCCchHHHHHHHH---HHh-hc
Q 003698 587 WGGYVKDYL---EAT--------EPY-FAVGEYWDSLSY---------TYG-----EMDHNQDAHRQRIID---WIN-AA 636 (802)
Q Consensus 587 ~~~f~~~~~---~~~--------~p~-~liGE~w~~~~~---------l~g-----~mny~~~~~~~~i~~---~~~-~~ 636 (802)
+.+.+.++. +++ .|. +++||.|+...- .+. .+.+..|.+|++|+. |-. ..
T Consensus 565 ~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkGg~~F~~~~~ 644 (970)
T PLN02877 565 MKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGTGIGSFNDRIRDAMLGGSPFGHPLQ 644 (970)
T ss_pred cHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccCCCceEEecchhHHHHcCCCCCCCcCC
Confidence 988665543 344 255 899999974210 111 134455566776663 200 01
Q ss_pred CCCccc-cc------c----h-------hhHHHHHhhhchhhhh--hhhhcC-----C----CCC---CcCCCCCcceee
Q 003698 637 SGTAGA-FD------V----T-------TKGILHSALDRCEYWR--LSDEKG-----K----PPG---VVGWWPSRAVTF 684 (802)
Q Consensus 637 ~~~~~~-fd------f----~-------l~~~l~~~~~~~~~~~--l~~~~~-----~----~~~---~~~~~P~~~vnf 684 (802)
.|+.+. +. . . +...++..+.+ +..+ +.+..+ . ..+ -....|.+.|||
T Consensus 645 qGf~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~~glaG-nl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InY 723 (970)
T PLN02877 645 QGFVTGLFLQPNGHDQGGEDVQELMLATAKDHIQVGMAG-NLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINY 723 (970)
T ss_pred CceecccccCCcccccccchhhhhhhhhhHHHHHHHhcc-chhccccccccccccccccccccCCcccccccCHHHheee
Confidence 122211 10 0 0 01111111111 1110 000000 0 000 112357789999
Q ss_pred cccCCCCCcCcCCC----C--C----chHHHHHHHHHHhCCCeeeEeCCchh--------------------HH------
Q 003698 685 IENHDTGSTQGHWR----F--P----GGREMQGYAYILTHPGTPSVFYDHIF--------------------SH------ 728 (802)
Q Consensus 685 l~nHDt~R~~~~~~----~--~----~~~~klA~allltlpGiP~IYyGdE~--------------------~W------ 728 (802)
++.||+..+...+. . . .++.++|++++|+.+|+|+|+.|+|| +|
T Consensus 724 vs~HDN~TL~D~l~~~~~~~~s~~~r~r~~~la~aiv~lsQGipF~haG~E~lRSK~~d~nSYnSgD~~N~lDw~~~~nn 803 (970)
T PLN02877 724 VSAHDNETLFDIISLKTPMEISVDERCRINHLATSIIALSQGIPFFHAGDEILRSKSLDRDSYNSGDWFNRLDFSYDSNN 803 (970)
T ss_pred eeccCCchHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchhhhcCCCCCCCCCcCchhhheeccccccCc
Confidence 99999987644321 1 1 13457899999999999999999997 12
Q ss_pred ------------------------------------HHHHHHHHHHHHHhCccccCCCee-------EEeeC----CCEE
Q 003698 729 ------------------------------------YRQEIEALLSVRKRNKIHCRSRVE-------IVKAE----RDVY 761 (802)
Q Consensus 729 ------------------------------------l~~~~~~Li~lRk~~~al~~G~~~-------~l~~~----~~v~ 761 (802)
..++||.||+|||++|+|+-++.. ++... .+++
T Consensus 804 ~~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~plFrl~t~~~I~~~v~F~~~g~~~~~gvi 883 (970)
T PLN02877 804 WGVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSSPLFRLRTANAIQERVRFHNTGPSSIPGVI 883 (970)
T ss_pred cccCCChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHhhcEEeccCCCcCCCEE
Confidence 378899999999999999865533 33332 2788
Q ss_pred EEEE
Q 003698 762 AAII 765 (802)
Q Consensus 762 a~~r 765 (802)
+|..
T Consensus 884 ~~~i 887 (970)
T PLN02877 884 VMSI 887 (970)
T ss_pred EEEE
Confidence 8865
No 30
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-38 Score=363.56 Aligned_cols=371 Identities=25% Similarity=0.334 Sum_probs=245.3
Q ss_pred CCCcceeEEeeeeecCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCCCCC-CCCCCCCccCCccCCCCCCHHHHHHHHHH
Q 003698 406 TGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNK 484 (802)
Q Consensus 406 ~~~~y~~~~~~F~Wd~~~~GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~-s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~ 484 (802)
+...|+++.+.|.|+....-||++||.+||||||+||||+|||+||++++ .+|||++.||+.|+|+|||++||++||++
T Consensus 17 ~~~~YQI~~~sF~~s~~d~~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~ 96 (545)
T KOG0471|consen 17 TESIYQIYPDSFADSDGDGVGDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILA 96 (545)
T ss_pred cCceeEEeccccccccCCCccccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHH
Confidence 34455555555554444334899999999999999999999999999999 66999999999999999999999999999
Q ss_pred HHHcCCEEEEEeccCcccccCCCCCCCCcc---CCCCCCCCC-----------------CcccCCCCCCCCCCCCCCCCC
Q 003698 485 FHDVGMKILGDVVLNHRCAHYQNQNGVWNI---FGGRLNWDD-----------------RAVVADDPHFQGRGNKSSGDN 544 (802)
Q Consensus 485 aH~~GIkVILD~V~NHt~~~~~~~~g~~~~---f~g~~~w~~-----------------~~~~~~~~~f~~~~~~~~~~~ 544 (802)
+|++||+||+|+|+||++..|+|+...... |...+.|++ .......++..+.+.++.+..
T Consensus 97 ~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~ 176 (545)
T KOG0471|consen 97 MHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQF 176 (545)
T ss_pred HhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceeccch
Confidence 999999999999999999888864322111 111122222 222222222233445556666
Q ss_pred CCCCCcccCCChHHHHHHHHHHH-HHHhhcCCceEEecccccccchhHHHHHHhcCCcEEEEeecCCCcccc-ccCCCCc
Q 003698 545 FHAAPNIDHSQDFVRKDIKEWLC-WLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTY-GEMDHNQ 622 (802)
Q Consensus 545 ~~~lpdln~~np~Vr~~i~~~l~-~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~~~~p~~liGE~w~~~~~l~-g~mny~~ 622 (802)
...+||||++||.|++.|.++++ +|. ++|+||||+|+++++...++. ..-...|.+-.||.|.+..+.. ..++|..
T Consensus 177 ~~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~ 254 (545)
T KOG0471|consen 177 AVLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGYAGENFK-NMWPDEPVFDVGEKLQDDNYVAYQYNDYGE 254 (545)
T ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEccccccccccc-ccccCCCcccceeEecCcchhhcccccccc
Confidence 78999999999999999999999 777 999999999999999988876 3444456789999998765422 2233333
Q ss_pred hHHH--HHHHHHHhhcCCCcccccchhhHHHHHhhhch--hhhhhhhhcCCCC-------------------C-------
Q 003698 623 DAHR--QRIIDWINAASGTAGAFDVTTKGILHSALDRC--EYWRLSDEKGKPP-------------------G------- 672 (802)
Q Consensus 623 ~~~~--~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~--~~~~l~~~~~~~~-------------------~------- 672 (802)
+... ..+..+..........+.+.-...+....... ...++........ .
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~ 334 (545)
T KOG0471|consen 255 DQPEIHDLIRAERFLLDDYSAAFGFGDKRILQTEAYSSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLTVASIYKEVEV 334 (545)
T ss_pred cchhhhhHHHHHHhhhhhhhhcccccchhhhhhhhhccHHHHHhhhccCCCCccccccchhhhhhhhhccchHHHHHHHH
Confidence 2111 11111111111112222222111111100000 0011000000000 0
Q ss_pred -CcCCCC---CcceeecccCCCCCcCcCCCCCchHHHHHHHHHHhCCCeeeEeCCchhH---------------------
Q 003698 673 -VVGWWP---SRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIFS--------------------- 727 (802)
Q Consensus 673 -~~~~~P---~~~vnfl~nHDt~R~~~~~~~~~~~~klA~allltlpGiP~IYyGdE~~--------------------- 727 (802)
.+...+ ..+...++|||..|..++++ ....++..++++|+||+|++|||+|++
T Consensus 335 ~~~~~~~~~~~~a~W~~~~~~~~r~~sr~~--~~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~~~rt 412 (545)
T KOG0471|consen 335 DWLSNHDTENRWAHWVLGNHDQARLASRFG--SDSVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLMQSRT 412 (545)
T ss_pred HHHhcCCccCCceeeeecCccchhhHHHhc--chhHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcCcHHhccCC
Confidence 000011 12445677788888777665 344677788999999999999999851
Q ss_pred ---H------------------------------------HHHHHHHHHHHHHhCccccCCCeeEEeeCCCEEEEEE---
Q 003698 728 ---H------------------------------------YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAII--- 765 (802)
Q Consensus 728 ---W------------------------------------l~~~~~~Li~lRk~~~al~~G~~~~l~~~~~v~a~~r--- 765 (802)
| +...++++..+|+....+..|....-..+..++++.|
T Consensus 413 ~~~w~~~~~~gfs~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~~~~~~~~if~~~r~~~ 492 (545)
T KOG0471|consen 413 PMQWDESTNAGFSEASKTWLPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSFVLFAATPGLFSFSRNWD 492 (545)
T ss_pred ccccccccccCCCCccCcceeccccchhheeeccccCCccHHHHHHHHHHHhhhcccccccceeeecCCCceEEEEeccC
Confidence 2 8889999999999988788888888878889999988
Q ss_pred CCEEEEEEeCCCCCC
Q 003698 766 DEKVAMKLGPGHYEP 780 (802)
Q Consensus 766 ~~~~lvvinn~~~~~ 780 (802)
+....++++|....+
T Consensus 493 ~~~~~~~~~~~~~~~ 507 (545)
T KOG0471|consen 493 GNERFIAVLNFGDSP 507 (545)
T ss_pred CCceEEEEEecCCcc
Confidence 345555555544333
No 31
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=2.1e-36 Score=342.29 Aligned_cols=348 Identities=12% Similarity=0.055 Sum_probs=253.2
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCC---------C-CCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcc
Q 003698 432 KEKATELSSLGFSVIWLPPPTES---------V-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 501 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es---------~-s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt 501 (802)
....+||++|||++|||+|++++ + .++|||+.| +.|||.|||++||++||++||++||+||+|+|+|||
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d-~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHT 155 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRIS-FDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHT 155 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCccc-CccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 45679999999999999999999 5 479999999 599999999999999999999999999999999999
Q ss_pred cccCCC---CCCCCccCCCCC-----------CCCCCccc---------------------CC--CCCCCCC-----CC-
Q 003698 502 CAHYQN---QNGVWNIFGGRL-----------NWDDRAVV---------------------AD--DPHFQGR-----GN- 538 (802)
Q Consensus 502 ~~~~~~---~~g~~~~f~g~~-----------~w~~~~~~---------------------~~--~~~f~~~-----~~- 538 (802)
|..|+- ..+ +.+|.|.+ -|.+.... +. ...|... .+
T Consensus 156 s~ghdF~lAr~~-~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt 234 (688)
T TIGR02455 156 GKGADFRLAELA-HGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWS 234 (688)
T ss_pred CCCcchHHHhhc-CCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCce
Confidence 999871 122 44555533 33322111 10 0123111 11
Q ss_pred ---------------CCCCCCCCCCCcccCCChH--HHHHHH-HHHHHHHhhcCCceEEeccccccc-------------
Q 003698 539 ---------------KSSGDNFHAAPNIDHSQDF--VRKDIK-EWLCWLRNEIGYDGWRLDFVRGFW------------- 587 (802)
Q Consensus 539 ---------------~~~~~~~~~lpdln~~np~--Vr~~i~-~~l~~Wi~e~GIDGfRlD~a~~~~------------- 587 (802)
+....++..+|+||+.||. ||+.|+ +++.+|+ +.|+||||+|++..+-
T Consensus 235 ~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg~e~~~~~~~~~e~ 313 (688)
T TIGR02455 235 ATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLGVERRAEGTAWSEG 313 (688)
T ss_pred ecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHH-HhccccceeccccceeeecCCCCCCCCcc
Confidence 1112356899999999999 999999 8999999 8999999999975331
Q ss_pred chhHHH---HHH--hcCCc-EEEEeecCCCccccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhh
Q 003698 588 GGYVKD---YLE--ATEPY-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYW 661 (802)
Q Consensus 588 ~~f~~~---~~~--~~~p~-~liGE~w~~~~~l~g~mny~~~~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~~~~ 661 (802)
..+.++ ++. ..++. ++++|.--. .+.++.|+. ++.+..|||.++..+..++..++..
T Consensus 314 h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~---------------~~d~~~~~g--~~~dl~~dF~t~p~~~~AL~tgda~ 376 (688)
T TIGR02455 314 HPLSLTGNQLIAGAIRKAGGFSFQELNLT---------------IDDIAAMSH--GGADLSYDFITRPAYHHALLTGDTE 376 (688)
T ss_pred CHHHHHHHHHHHHhhhcCCeeEeeeccCC---------------HHHHHHHhC--CCcceeecccccHHHHHHHHcCCHH
Confidence 234333 333 22465 899995222 467888887 3889999999998888888877655
Q ss_pred hhhhhcCCCCCCcCCCCCcceeecccCCCCC--------------------------------------c----------
Q 003698 662 RLSDEKGKPPGVVGWWPSRAVTFIENHDTGS--------------------------------------T---------- 693 (802)
Q Consensus 662 ~l~~~~~~~~~~~~~~P~~~vnfl~nHDt~R--------------------------------------~---------- 693 (802)
-+...+...... +.-+.+.++||.|||.-. +
T Consensus 377 pLr~~L~~~~~~-gid~~~~~~~LrNHDELtlelvh~~~~~~~~~~~~~g~~~~g~~l~e~~R~~m~~~~a~d~~p~~m~ 455 (688)
T TIGR02455 377 FLRLMLKEMHAF-GIDPASLIHALQNHDELTLELVHFWTLHAHDHYHYKGQTLPGGHLREHIREEIYERLSGEHAPYNLK 455 (688)
T ss_pred HHHHHHHhhhcC-CCCchhhhhhccCccccchhhhhhcccccccccccccccCCccccCHHHHHHHHHHhcCCCccccce
Confidence 444433221111 112346789999999811 0
Q ss_pred -C----------------------cCCCCCchHHHHHHHHHHh----CCCeeeEeCC--------------chhH-----
Q 003698 694 -Q----------------------GHWRFPGGREMQGYAYILT----HPGTPSVFYD--------------HIFS----- 727 (802)
Q Consensus 694 -~----------------------~~~~~~~~~~klA~alllt----lpGiP~IYyG--------------dE~~----- 727 (802)
. .....+..+.+++.+++++ +||+|+|||| +|++
T Consensus 456 ~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG~p~L~ygdl~GalpL~~~~v~deigmGD~~ 535 (688)
T TIGR02455 456 FVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPGVFALSGWDLVGALPLAAEAVAELMGDGDTR 535 (688)
T ss_pred EEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCCceEeecccccccccccccchhhhhccCccc
Confidence 0 0011234668899999999 9999999999 6641
Q ss_pred H-----------------------------------------HHHHHHHHHHHHHhCccccCCCeeEEeeCC-CEEEEEE
Q 003698 728 H-----------------------------------------YRQEIEALLSVRKRNKIHCRSRVEIVKAER-DVYAAII 765 (802)
Q Consensus 728 W-----------------------------------------l~~~~~~Li~lRk~~~al~~G~~~~l~~~~-~v~a~~r 765 (802)
| +.+.+++|+++||+++++..|.+..+.+.+ .++++.+
T Consensus 536 wl~rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~~~~~~gvLa~v~ 615 (688)
T TIGR02455 536 WIHRGGYDLADLAPEAEASAEGLPKARALYGSLAEQLDEPDSFACKLKKILAVRQAYDIAASKQILIPDVQAPGLLVMVH 615 (688)
T ss_pred cccCCCcccCCCCchhhhccCCCCCCcCCCCCHHHHhhCCccHHHHHHHHHHHHHhCCcccCceeeecCCCCCcEEEEEE
Confidence 2 999999999999999999999999988766 7888765
Q ss_pred ----CCEEEEEEeCCCCCCC--------------------------CCCCCeEEEEcCCCeEEEe
Q 003698 766 ----DEKVAMKLGPGHYEPP--------------------------SGSQNWSFVTEGRDYKVWE 800 (802)
Q Consensus 766 ----~~~~lvvinn~~~~~~--------------------------~~~~~~~~~~~g~~~~vw~ 800 (802)
++..+++++|++..+. .....+++.+++++|.+++
T Consensus 616 ~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~~~~~~dl~~~~~~~~~~~~~~~~i~L~~y~~~wl~ 680 (688)
T TIGR02455 616 ELPAGKGIQITALNFGADAIAEEICLPGFAPGPVVDIIHESVEGDLTDDCELMINLDPYEALALR 680 (688)
T ss_pred EcCCCCceEEEeeccCCCCeeeEEeccccCCCCceeccCCCccCCcCCCceeEEEecCcceEEEE
Confidence 2366777777765431 1334589999999998765
No 32
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-37 Score=362.60 Aligned_cols=327 Identities=21% Similarity=0.287 Sum_probs=219.6
Q ss_pred CCCCCCCCCCCcceeEEeeeeecCCC----CCCCHHHHHHH--HHHHHhcCCCEEEeCCCCCCC-----------CCCCC
Q 003698 398 PPAKISPGTGTGFEILCQGFNWESHK----SGRWYMELKEK--ATELSSLGFSVIWLPPPTESV-----------SPEGY 460 (802)
Q Consensus 398 ~~~~~~~~~~~~y~~~~~~F~Wd~~~----~GGdl~GI~~k--LdYLk~LGvtaI~L~PI~es~-----------s~hGY 460 (802)
++.++...+.+.||+++++|+--.+. ..|+|.|++++ |+|||+||||+|+||||+... .||||
T Consensus 163 ~~~~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGY 242 (697)
T COG1523 163 KPPRIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGY 242 (697)
T ss_pred CCCCCCccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCC
Confidence 34556678889999999999842222 35999999999 999999999999999999864 78999
Q ss_pred CCccCCccCCCCCCH-------HHHHHHHHHHHHcCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCC
Q 003698 461 MPRDLYNLSSRYGNI-------DELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHF 533 (802)
Q Consensus 461 d~~Dy~~IDp~~Gt~-------edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f 533 (802)
+|..||+++++|.+. .|||.||+++|++||.||||+|||||+.... .|.-..|.+..+-.....
T Consensus 243 dP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~--~g~t~~f~~id~~~Yyr~------- 313 (697)
T COG1523 243 DPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNE--LGPTLSFRGIDPNYYYRL------- 313 (697)
T ss_pred CcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccC--cCcccccccCCcCceEEE-------
Confidence 999999999999874 3999999999999999999999999985421 233333433200000000
Q ss_pred CCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEecccccccchhH-----HHHHHhc--CC----cE
Q 003698 534 QGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYV-----KDYLEAT--EP----YF 602 (802)
Q Consensus 534 ~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~-----~~~~~~~--~p----~~ 602 (802)
+..+.+. ....+...||.++|.||++|+|+|+||+++|+|||||||.|..+..+-. ..+.... .| ..
T Consensus 314 ~~dg~~~--N~TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~~~~~l~~~~~~~p~l~~~k 391 (697)
T COG1523 314 DPDGYYS--NGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFDINANLFLAGEGDPVLSGVK 391 (697)
T ss_pred CCCCCee--cCCccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccccCcchhhhccCCccccCce
Confidence 0011110 0112334699999999999999999999999999999999986655433 1222222 12 24
Q ss_pred EEEeecCCC--ccccccCC--C----CchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCc
Q 003698 603 AVGEYWDSL--SYTYGEMD--H----NQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVV 674 (802)
Q Consensus 603 liGE~w~~~--~~l~g~mn--y----~~~~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~~~~~l~~~~~~~~~~~ 674 (802)
+++|.|+-. .|..|... + ..+.+++.+++|+.+..+.. ..+...+.++. ++.. ..
T Consensus 392 liAepwD~g~~gyqvG~Fpd~~~~aewng~~rD~vr~F~~G~~~~~--------~~~a~rl~gS~--d~~~-------~~ 454 (697)
T COG1523 392 LIAEPWDIGPGGYQVGNFPDSPRWAEWNGRFRDDVRRFWRGDAGLV--------GEFAKRLAGSS--DLYK-------RN 454 (697)
T ss_pred eeecchhhcCCCcccccCCCccchhhhCCcccccccceeeCCCccH--------HHHHHHhhcCc--chhh-------cc
Confidence 899999754 34444322 1 11234556666665433221 12222222211 1111 11
Q ss_pred CCCCCcceeecccCCCCCcCcCCCC-------------------------------------Cch-HHHHHHHHHHhCCC
Q 003698 675 GWWPSRAVTFIENHDTGSTQGHWRF-------------------------------------PGG-REMQGYAYILTHPG 716 (802)
Q Consensus 675 ~~~P~~~vnfl~nHDt~R~~~~~~~-------------------------------------~~~-~~klA~allltlpG 716 (802)
.+.|.+.+||+..||.-.+.....+ .++ ..+..++.+|+..|
T Consensus 455 ~~~p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG 534 (697)
T COG1523 455 GRRPSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQG 534 (697)
T ss_pred CCCccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcC
Confidence 2458899999999999433211100 012 23455666777899
Q ss_pred eeeEeCCchh--------------------HH-------HHHHHHHHHHHHHhCccccCCCee
Q 003698 717 TPSVFYDHIF--------------------SH-------YRQEIEALLSVRKRNKIHCRSRVE 752 (802)
Q Consensus 717 iP~IYyGdE~--------------------~W-------l~~~~~~Li~lRk~~~al~~G~~~ 752 (802)
+||+-.|||+ +| ++++++.||+|||++++|+...+.
T Consensus 535 ~pml~~gDe~~rtq~gnnNsYcqdn~inwlDW~~~~~~~l~~f~~~lIaLRk~~~af~~~~f~ 597 (697)
T COG1523 535 TPMLLAGDEFGRTQYGNNNAYCQDNEINWLDWSTEANNDLVEFTKGLIALRKAHPAFRRRSFF 597 (697)
T ss_pred CcccccccccccccccccccccCCcccceeccCccccHHHHHHHHHHHHHhhhcchhcccchh
Confidence 9999999996 35 899999999999999999874433
No 33
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=100.00 E-value=9.2e-35 Score=342.22 Aligned_cols=186 Identities=23% Similarity=0.293 Sum_probs=147.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEeCCCCCCC--CCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 003698 425 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 502 (802)
Q Consensus 425 GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~--s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~ 502 (802)
|++|.+++++||||++|||++|||+|||++. ++|||++.||+.|||.|||.++|++||++||++||+||||+|+||++
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 7899999999999999999999999999974 78999999999999999999999999999999999999999999999
Q ss_pred cc---CCC-----CCCCCccCCCC--CCCCCCcc----------------------------------cCCCCCC-----
Q 003698 503 AH---YQN-----QNGVWNIFGGR--LNWDDRAV----------------------------------VADDPHF----- 533 (802)
Q Consensus 503 ~~---~~~-----~~g~~~~f~g~--~~w~~~~~----------------------------------~~~~~~f----- 533 (802)
.+ +++ .+|.-++|.+. .+|.+... .+-+..|
T Consensus 92 ~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ 171 (825)
T TIGR02401 92 VHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPG 171 (825)
T ss_pred cccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCcc
Confidence 87 332 24544555443 34542100 0000000
Q ss_pred -----------C------------------------CCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceE
Q 003698 534 -----------Q------------------------GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 578 (802)
Q Consensus 534 -----------~------------------------~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGf 578 (802)
+ +.-+|..+.....|+.++.++|+|.++...++..|+++.-|||+
T Consensus 172 ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGl 251 (825)
T TIGR02401 172 TLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGL 251 (825)
T ss_pred chhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceE
Confidence 0 00122223345789999999999999999999999966669999
Q ss_pred Eecccccc--cchhHHHHHHhcCCc-EEEEe-ecCC
Q 003698 579 RLDFVRGF--WGGYVKDYLEATEPY-FAVGE-YWDS 610 (802)
Q Consensus 579 RlD~a~~~--~~~f~~~~~~~~~p~-~liGE-~w~~ 610 (802)
|+|+++++ |..|++++.++.+|. +++.| ++..
T Consensus 252 RIDh~dGL~dP~~Yl~rLr~~~~~~~yivvEKIl~~ 287 (825)
T TIGR02401 252 RIDHIDGLADPEGYLRRLRELVGPARYLVVEKILAP 287 (825)
T ss_pred EeccccccCChHHHHHHHHHhcCCCceEEEEEeccC
Confidence 99999999 777999988888774 78888 6654
No 34
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-35 Score=335.24 Aligned_cols=339 Identities=19% Similarity=0.178 Sum_probs=214.4
Q ss_pred CCCcceeEEeeeeecCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCCCCC--CCCCCCCccCCccCCCCCCHHHHHHHHH
Q 003698 406 TGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVN 483 (802)
Q Consensus 406 ~~~~y~~~~~~F~Wd~~~~GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~--s~hGYd~~Dy~~IDp~~Gt~edfk~LV~ 483 (802)
..+.|++++..|+++ ..-|+++..+++|||||+||||+|.||||.+.+ .+|||+++-||++..+|||+++||+||+
T Consensus 144 ~~vIYElHvGs~~~~--~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD 221 (628)
T COG0296 144 PIVIYELHVGSFTPD--RFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVD 221 (628)
T ss_pred CceEEEEEeeeccCC--CCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHH
Confidence 568899999999863 446899999999999999999999999999999 6799999999999999999999999999
Q ss_pred HHHHcCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHH
Q 003698 484 KFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIK 563 (802)
Q Consensus 484 ~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~ 563 (802)
+||++||.||||+|+||.+.+... ...|++. .++.... + +. +.... .+.--.|+..++||+||+
T Consensus 222 ~aH~~GIgViLD~V~~HF~~d~~~----L~~fdg~-~~~e~~~----~-~~--~~~~~----Wg~~i~~~gr~EVR~Fll 285 (628)
T COG0296 222 AAHQAGIGVILDWVPNHFPPDGNY----LARFDGT-FLYEHED----P-RR--GEHTD----WGTAIFNYGRNEVRNFLL 285 (628)
T ss_pred HHHHcCCEEEEEecCCcCCCCcch----hhhcCCc-cccccCC----c-cc--ccCCC----cccchhccCcHHHHHHHH
Confidence 999999999999999999975431 1223332 1111000 0 00 00000 122234556999999999
Q ss_pred HHHHHHHhhcCCceEEecccccccch------------------------hHHHHHH---hcCCc-EEEEeecCCCcccc
Q 003698 564 EWLCWLRNEIGYDGWRLDFVRGFWGG------------------------YVKDYLE---ATEPY-FAVGEYWDSLSYTY 615 (802)
Q Consensus 564 ~~l~~Wi~e~GIDGfRlD~a~~~~~~------------------------f~~~~~~---~~~p~-~liGE~w~~~~~l~ 615 (802)
+++++|+++|+|||+|+||+..|... |++...+ ...|. +.|+|.|.+-+...
T Consensus 286 ~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~t 365 (628)
T COG0296 286 ANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVT 365 (628)
T ss_pred HHHHHHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCce
Confidence 99999999999999999999755321 2222111 12344 78999998732100
Q ss_pred ccCCCCchHHHHHHHHHHhhcCCCcccccchhh-HHHHHhhhchhhhhhhhh--cCCCCCCcCCCCCcceeecccCCCC-
Q 003698 616 GEMDHNQDAHRQRIIDWINAASGTAGAFDVTTK-GILHSALDRCEYWRLSDE--KGKPPGVVGWWPSRAVTFIENHDTG- 691 (802)
Q Consensus 616 g~mny~~~~~~~~i~~~~~~~~~~~~~fdf~l~-~~l~~~~~~~~~~~l~~~--~~~~~~~~~~~P~~~vnfl~nHDt~- 691 (802)
+...+.+ ..|++... ..+++.+.-.+....... .+....-+...++..+.|+-|||..
T Consensus 366 -------------~~~~~gG-----~gf~yk~nmg~m~D~~~y~~~~~~~r~~~h~~~tf~~~y~~se~~~l~~sHDevv 427 (628)
T COG0296 366 -------------LPVAIGG-----LGFGYKWNMGWMHDTLFYFGKDPVYRKYHHGELTFGLLYAFSENVVLPLSHDEVV 427 (628)
T ss_pred -------------eeecccc-----cchhhhhhhhhHhhHHHhcccCccccccccCCCccccccccceeEecccccccee
Confidence 0000000 01111110 012221110000000000 0000000012345788999999996
Q ss_pred ---C-cCcCCCC----CchHHHHHHHHHHhCCCeeeEeCCchhH------------H--------------HHHHHHHHH
Q 003698 692 ---S-TQGHWRF----PGGREMQGYAYILTHPGTPSVFYDHIFS------------H--------------YRQEIEALL 737 (802)
Q Consensus 692 ---R-~~~~~~~----~~~~~klA~allltlpGiP~IYyGdE~~------------W--------------l~~~~~~Li 737 (802)
| +...+.+ ....++.++++|+++||+|+++||+||+ | +..+.+.|.
T Consensus 428 hGk~sl~~rm~g~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~~~~~~w~~L~~~~~~g~~~~~~~~~~~ln 507 (628)
T COG0296 428 HGKRSLGERMPGDAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWNFFSSLDWLLLDQAVREGRHKEFRRLVRDLN 507 (628)
T ss_pred ecccchhccCCcchhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCcccCCCChhhhhhccccchHHHHHHHHHhhH
Confidence 2 1112211 2456789999999999999999999983 4 233333333
Q ss_pred HHHHhCccc-----cCCCeeEEeeCC---CEEEEEE-----CCEEEEEEeCCCCCC
Q 003698 738 SVRKRNKIH-----CRSRVEIVKAER---DVYAAII-----DEKVAMKLGPGHYEP 780 (802)
Q Consensus 738 ~lRk~~~al-----~~G~~~~l~~~~---~v~a~~r-----~~~~lvvinn~~~~~ 780 (802)
++-+..+++ +...+..+..++ ++++|.| ....+|+++|++..+
T Consensus 508 ~~y~~~~~l~~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~~n~~~~~ 563 (628)
T COG0296 508 ALYRIPDPLHEQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVVNNFTPVP 563 (628)
T ss_pred HhhccCCccchhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEEeCCCCCc
Confidence 344444443 344566665433 5777766 357788999987766
No 35
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4.9e-30 Score=291.09 Aligned_cols=167 Identities=28% Similarity=0.430 Sum_probs=131.6
Q ss_pred CCCcceeEEeeeeecCC---CCCCCHHHHHHH-HHHHHhcCCCEEEeCCCCCCC---CCCCCCCccCCccCCCCCCHH--
Q 003698 406 TGTGFEILCQGFNWESH---KSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRYGNID-- 476 (802)
Q Consensus 406 ~~~~y~~~~~~F~Wd~~---~~GGdl~GI~~k-LdYLk~LGvtaI~L~PI~es~---s~hGYd~~Dy~~IDp~~Gt~e-- 476 (802)
+-..|++++++|+=+.+ ..|| ++|.++| |++||+||+|||+|||||++. .++||.|++|+++-.+|||.+
T Consensus 229 sL~IYE~HVrgfS~~E~~v~~~~g-Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~ 307 (757)
T KOG0470|consen 229 SLRIYELHVRGFSSHESKVNTRGG-YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESP 307 (757)
T ss_pred heEEEEEeeccccCCCCccccccc-hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcc
Confidence 45789999999973222 1356 9999999 999999999999999999994 469999999999999999999
Q ss_pred ----HHHHHHHHHHHcCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCccc
Q 003698 477 ----ELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNID 552 (802)
Q Consensus 477 ----dfk~LV~~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln 552 (802)
|||.||++||..||-|+||+|+||++.+.. +.++.|+|.- +..+|+... .......+..-+|
T Consensus 308 ~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~---d~l~~fdGid---------~~~Yf~~~~--r~~h~~~~~r~fn 373 (757)
T KOG0470|consen 308 CRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSK---DGLNMFDGID---------NSVYFHSGP--RGYHNSWCSRLFN 373 (757)
T ss_pred cchHHHHHHHHHHhhCCcEEehhhhhhhcccCcC---CcchhccCcC---------CceEEEeCC--ccccccccccccc
Confidence 999999999999999999999999997432 3334455420 011221000 0111123445699
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCceEEeccccccc
Q 003698 553 HSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW 587 (802)
Q Consensus 553 ~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~ 587 (802)
++.++|+++|++.++||+.+|+|||||||.+..|.
T Consensus 374 ~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~ 408 (757)
T KOG0470|consen 374 YNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSML 408 (757)
T ss_pred CCCHHHHHHHHHHHHHHHHheeccceEEcchhhhh
Confidence 99999999999999999999999999999986543
No 36
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.96 E-value=3e-28 Score=288.37 Aligned_cols=82 Identities=23% Similarity=0.342 Sum_probs=78.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEeCCCCCCC--CCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 003698 425 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 502 (802)
Q Consensus 425 GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~--s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~ 502 (802)
+++|++++++|+||++||||+|||+||+++. ++|||++.||+.|||.||+.++|++||++||++||+||||+|+|||+
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 6789999999999999999999999999985 88999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 003698 503 AHYQ 506 (802)
Q Consensus 503 ~~~~ 506 (802)
.+++
T Consensus 96 ~~~~ 99 (879)
T PRK14511 96 VGGP 99 (879)
T ss_pred CcCc
Confidence 8763
No 37
>PLN03244 alpha-amylase; Provisional
Probab=99.96 E-value=9.4e-28 Score=276.45 Aligned_cols=301 Identities=17% Similarity=0.188 Sum_probs=184.7
Q ss_pred CcceeEEeeeeecCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHH
Q 003698 408 TGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD 487 (802)
Q Consensus 408 ~~y~~~~~~F~Wd~~~~GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~ 487 (802)
..|+.++.-.. ....-|+++..+++ +++||+++++|||++|||+||++||+
T Consensus 402 rIYE~HvGms~--~e~kv~ty~eF~~~---------------------------vt~fFApssRYGTPeDLK~LVD~aH~ 452 (872)
T PLN03244 402 RIYECHVGISG--SEPKISSFEEFTEK---------------------------VTNFFAASSRYGTPDDFKRLVDEAHG 452 (872)
T ss_pred eEEEEEeeecC--CCCCcccHHHHhhc---------------------------cCcccccCcccCCHHHHHHHHHHHHH
Confidence 46777765433 11123788887775 67999999999999999999999999
Q ss_pred cCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCC--CCCCCCCCCCCCCCcccCCChHHHHHHHHH
Q 003698 488 VGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQG--RGNKSSGDNFHAAPNIDHSQDFVRKDIKEW 565 (802)
Q Consensus 488 ~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~--~~~~~~~~~~~~lpdln~~np~Vr~~i~~~ 565 (802)
+||+||||+|+||++.+... | ...|+|.. ..+|+. .+... .++...+|+.+++|+++|+++
T Consensus 453 ~GI~VILDvV~NH~~~d~~~--G-L~~fDGt~----------~~Yf~~~~~g~~~----~WGs~~fnyg~~EVr~FLLsn 515 (872)
T PLN03244 453 LGLLVFLDIVHSYAAADEMV--G-LSLFDGSN----------DCYFHTGKRGHHK----HWGTRMFKYGDLDVLHFLISN 515 (872)
T ss_pred CCCEEEEEecCccCCCcccc--c-hhhcCCCc----------cceeccCCCCccC----CCCCceecCCCHHHHHHHHHH
Confidence 99999999999999976421 1 12233310 012221 11111 113457999999999999999
Q ss_pred HHHHHhhcCCceEEecccccccc-------------------------hhHHH---HHHhcCCc-EEEEeecCCCcc---
Q 003698 566 LCWLRNEIGYDGWRLDFVRGFWG-------------------------GYVKD---YLEATEPY-FAVGEYWDSLSY--- 613 (802)
Q Consensus 566 l~~Wi~e~GIDGfRlD~a~~~~~-------------------------~f~~~---~~~~~~p~-~liGE~w~~~~~--- 613 (802)
++||+++|||||||+|++..|-- .|++. .+....|. ++|+|...+-+-
T Consensus 516 a~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~vt~ 595 (872)
T PLN03244 516 LNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATYYPGLCE 595 (872)
T ss_pred HHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCccc
Confidence 99999999999999998832210 13332 33445787 899997764221
Q ss_pred --ccccCCCCch---HHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccC
Q 003698 614 --TYGEMDHNQD---AHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENH 688 (802)
Q Consensus 614 --l~g~mny~~~---~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~P~~~vnfl~nH 688 (802)
..|.+.+... ...+...+|+.... . .-|++....... ....++...++.|.+||
T Consensus 596 Pv~~GGLGFDYKWnMgwmdd~lkylk~~p----d----------------erw~~~~ItfsL-~~nrr~~ek~~aYsESH 654 (872)
T PLN03244 596 PTSQGGLGFDYYVNLSAPDMWLDFLDNIP----D----------------HEWSMSKIVSTL-IANKEYADKMLSYAENH 654 (872)
T ss_pred cCCCCCCCccceecCcchHHHHHHHHhCC----C----------------cccCHHHHhhhh-hcccCCcceEEEEeccc
Confidence 1121111100 00111222222110 0 002111111000 00122344678999999
Q ss_pred CCC----CcCcC-C---------CC------CchHHHHHHHHHHhCCCee-eEeCCchhH--------------------
Q 003698 689 DTG----STQGH-W---------RF------PGGREMQGYAYILTHPGTP-SVFYDHIFS-------------------- 727 (802)
Q Consensus 689 Dt~----R~~~~-~---------~~------~~~~~klA~allltlpGiP-~IYyGdE~~-------------------- 727 (802)
|.+ +.... + .. .....||+.++++++||.| ++|+|.||+
T Consensus 655 DqaLvGdKTlaf~l~d~~~y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr~gN~~s~~~ar 734 (872)
T PLN03244 655 NQSISGGRSFAEILFGAIDEDPLGGKELLDRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPERIEFPMPSNNFSFSLAN 734 (872)
T ss_pred ceeccccchHHhhhcccccccccccchhhhhhhHHHHHHHHHHHHccCccceeecccccCCchheeccccCCCccccccc
Confidence 993 21111 1 00 0113366667789999988 799999862
Q ss_pred --H----------HHHHHHHHHHHHHhCccccCCCeeEEe--eCCCEEEEEECCEEEEEEeCC
Q 003698 728 --H----------YRQEIEALLSVRKRNKIHCRSRVEIVK--AERDVYAAIIDEKVAMKLGPG 776 (802)
Q Consensus 728 --W----------l~~~~~~Li~lRk~~~al~~G~~~~l~--~~~~v~a~~r~~~~lvvinn~ 776 (802)
| |.+++|.|++|++++++|..|..-+.. .++.|+||.|++ +++|+|..
T Consensus 735 rdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~~~d~e~kVIAF~R~~-LLfVfNF~ 796 (872)
T PLN03244 735 RCWDLLENEVHHHLFSFDKDLMDLDENEGILSRGLPNIHHVKDAAMVISFMRGP-FLFIFNFH 796 (872)
T ss_pred cCccccCChhHHHHHHHHHHHHHHHhcCcccccCCcEEeeecCCCCEEEEEecC-EEEEEeCC
Confidence 4 788999999999999999876544443 344799999973 55555554
No 38
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2e-26 Score=239.97 Aligned_cols=332 Identities=24% Similarity=0.413 Sum_probs=238.5
Q ss_pred CCcceeEEeeeeecCCCCCCCHHHHHHH-HHHHHhcCCCEEEeCCCCCCCC--------CCCCCCccCCccCCCCCCHHH
Q 003698 407 GTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESVS--------PEGYMPRDLYNLSSRYGNIDE 477 (802)
Q Consensus 407 ~~~y~~~~~~F~Wd~~~~GGdl~GI~~k-LdYLk~LGvtaI~L~PI~es~s--------~hGYd~~Dy~~IDp~~Gt~ed 477 (802)
..++..+++-|.|. +..|... -..|+--|+.+|+++|+.|+.. -.+|+|.. |+++.|-|.++|
T Consensus 25 ~~~R~tmVHLFEWK-------W~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~tRSGNE~e 96 (504)
T KOG2212|consen 25 QQGRTTIVHLFEWK-------WVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDE 96 (504)
T ss_pred hcCcceEEEEEEee-------hHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEeeccCCCHHH
Confidence 34567899999995 5566554 4589999999999999999761 24799997 599999999999
Q ss_pred HHHHHHHHHHcCCEEEEEeccCcccccCCC-----CCCCCc-----cCCCCCCCCCCcccCCCCCCCC------------
Q 003698 478 LKDVVNKFHDVGMKILGDVVLNHRCAHYQN-----QNGVWN-----IFGGRLNWDDRAVVADDPHFQG------------ 535 (802)
Q Consensus 478 fk~LV~~aH~~GIkVILD~V~NHt~~~~~~-----~~g~~~-----~f~g~~~w~~~~~~~~~~~f~~------------ 535 (802)
|+.||+.|.+-|+||++|+|+|||+..... ..|.+. .|.| +++...+|+.
T Consensus 97 F~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPG--------VPYs~~DFn~~kc~~~~~~i~~ 168 (504)
T KOG2212|consen 97 FRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPG--------VPYSGWDFNDGKCKTGSGDIEN 168 (504)
T ss_pred HHHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCC--------CCcccccCCCcccCCCcccccc
Confidence 999999999999999999999999863211 112111 1222 1111122221
Q ss_pred --CCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEecccccccchhHHHHHHhc---C-------C-cE
Q 003698 536 --RGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---E-------P-YF 602 (802)
Q Consensus 536 --~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~~~---~-------p-~~ 602 (802)
.......+...+|.|||..+..||..|++.|.+++ +.||.|||.|+++|||++-+..++..+ + . .|
T Consensus 169 ~Nda~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~Di~~I~~~l~nLnsD~f~s~srpf 247 (504)
T KOG2212|consen 169 YNDATQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGDIKAILDKLHNLNSDWFPSGSKPF 247 (504)
T ss_pred ccchhhhhcceEeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHHHHHHHHHHhhcccccccCCCCce
Confidence 01112345678999999999999999999999999 999999999999999999888776553 1 1 26
Q ss_pred EEEeecCCCccccccCCCCchHHHHHHH--HHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCC-
Q 003698 603 AVGEYWDSLSYTYGEMDHNQDAHRQRII--DWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPS- 679 (802)
Q Consensus 603 liGE~w~~~~~l~g~mny~~~~~~~~i~--~~~~~~~~~~~~fdf~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~P~- 679 (802)
++-|+.+... ++|. +|+ ..|....|.| ...+..++...+.+.++..++...+. -|+
T Consensus 248 i~qEVID~Gg--------------E~v~~~dY~--g~G~~TeF~f--~~~ig~~~r~~~~~kyL~nwG~~wGf---~~s~ 306 (504)
T KOG2212|consen 248 IYQEVIDLGG--------------EPIKSSDYF--GNGRVTEFKF--GAKLGTVIRKWNKMKYLKNWGEGWGF---MPSD 306 (504)
T ss_pred ehhhhhhcCC--------------ceeeccccc--CCceeeeeec--hHHHHHHHhcchhHHHHHhcCCccCc---CCCc
Confidence 7777765421 0111 122 1233344444 44577777777777777766644333 243
Q ss_pred cceeecccCCCCCcCcC-----CC-CCchHHHHHHHHHHhCC-CeeeEeCCchh--------------------------
Q 003698 680 RAVTFIENHDTGSTQGH-----WR-FPGGREMQGYAYILTHP-GTPSVFYDHIF-------------------------- 726 (802)
Q Consensus 680 ~~vnfl~nHDt~R~~~~-----~~-~~~~~~klA~allltlp-GiP~IYyGdE~-------------------------- 726 (802)
++++|++|||+.|-.+. +. .+.++++||.+++|.+| |+|-+....-|
T Consensus 307 ~~L~FvDNHDNQR~~gagga~VltYK~~~~YkmA~~FmLA~PyG~~RVMSSFaF~~~D~~PP~~~~~~i~SP~Fn~D~tC 386 (504)
T KOG2212|consen 307 RALVFVDNHDNQRGHGAGGASVLTYKDARLYKMAVGFMLAHPYGFTRVMSSFAFDVNDWVPPPNNNGVIKSPTFNPDTTC 386 (504)
T ss_pred ceEEEeccCcccccCCCCcceEEEecchhhhhhhhhhheecccCcchhheeeeeecCCCCCCCCCCcceecceeCCCCcc
Confidence 78999999999997654 11 14678999999999999 99999886433
Q ss_pred --HH----HHHHHHHHHHHHHhCccccCCCeeEEeeC-CCEEEEEECCEEEEEEeCCCCC
Q 003698 727 --SH----YRQEIEALLSVRKRNKIHCRSRVEIVKAE-RDVYAAIIDEKVAMKLGPGHYE 779 (802)
Q Consensus 727 --~W----l~~~~~~Li~lRk~~~al~~G~~~~l~~~-~~v~a~~r~~~~lvvinn~~~~ 779 (802)
+| -...|++|..+|+.- +.-.+.-+..+ .+-++|.|+++..+++||..+.
T Consensus 387 ~~GWvCEHRWrqI~~Mv~FrnAV---~~t~~~~w~d~g~nqIaF~Rg~kGF~A~Nn~~~d 443 (504)
T KOG2212|consen 387 GNGWVCEHRWRQIRNMVNFRNAV---DGTPFTNWYDNGSNQIAFGRGNRGFIAFNNDDWD 443 (504)
T ss_pred cCceeeechHHHHHHHHhhhhhc---CCccccceeeCCCcEEEEecCCccEEEEeCcchh
Confidence 36 778899999999864 33334444444 5789999999999999997654
No 39
>PLN02784 alpha-amylase
Probab=99.93 E-value=5.9e-26 Score=265.35 Aligned_cols=128 Identities=23% Similarity=0.449 Sum_probs=116.5
Q ss_pred hccccccCceeEEEecceEEEEEeeCCCCCceEEEEEcCCCCCeEEEeeeecCCC--CCcccCCCCCCCCcce-eccccc
Q 003698 174 EGFYEELPIVKEIIIENTVSVSVRKCPETAKTLLNLETDLTGDVVVHWGVCRDDS--KNWEIPAEPYPPETIV-FKNKAL 250 (802)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~t~~~~~~~lHWgv~~~~~--~~W~~pp~~~~p~~~~-~~~~a~ 250 (802)
.=|.+.|++.+.+.+|+++.|+|. ....++++|+|+||+|++|||||||+++++ +||++||++++|++|+ ++++||
T Consensus 76 v~~kk~F~v~~~e~ve~~~~v~l~-~~~~g~~kv~v~t~~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~~~~~A~ 154 (894)
T PLN02784 76 VFFKETFPVKRTEKVEGKIYVRLE-EKNEKNWKLSVGCSIPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIAIKDYAI 154 (894)
T ss_pred ceeeeeeeecccceecceeEEEEE-ccCCCcEEEEEEecCCCCeEEEEeEecCCCCCccccCCCcccCCCCcEEecCeEE
Confidence 346778999999999999999998 556679999999999999999999999874 6999999999888888 779999
Q ss_pred cccccccCCCCcceee-Ee--ecCceeeeEEEEEcC-cccccccCCCceeEeCCCC
Q 003698 251 RTLLQPKEGGKGCSRL-FT--VDEEFAGFLFVLKLN-ENTWLKCMENDFYIPLTSS 302 (802)
Q Consensus 251 ~T~~~~~~~~~~~~~~-~~--~~~~~~~~~Fvl~~~-~~~W~k~~g~df~v~~~~~ 302 (802)
||||++++.++.++++ |+ +++++.||+||||++ +++||||||+||||||+..
T Consensus 155 eT~f~~~s~~~~~~~v~iel~l~~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~ 210 (894)
T PLN02784 155 ETPLKKSSEGDSFYEVTIDLDPNSSIAAINFVLKDEETGAWYQHKGRDFKVPLVDD 210 (894)
T ss_pred eccccccccCCcceeEEEEEeeCCceeeEEEEEEeCCCCchhhcCCccEEEecccc
Confidence 9999999999999986 44 599999999999997 8999999999999999874
No 40
>smart00642 Aamy Alpha-amylase domain.
Probab=99.91 E-value=8.7e-25 Score=216.78 Aligned_cols=92 Identities=33% Similarity=0.523 Sum_probs=86.0
Q ss_pred eEEeeeeecCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCCCCC----CCCCCCCccCCccCCCCCCHHHHHHHHHHHHH
Q 003698 412 ILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV----SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD 487 (802)
Q Consensus 412 ~~~~~F~Wd~~~~GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~----s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~ 487 (802)
++++.|.|..+..+|||+||+++|+||++||||+|||+||+++. ++|||++.||+++||+|||++||++||++||+
T Consensus 2 i~~~~F~~~~~~~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~ 81 (166)
T smart00642 2 IYPDRFADGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHA 81 (166)
T ss_pred eeeccccCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHH
Confidence 45667777666668999999999999999999999999999999 78999999999999999999999999999999
Q ss_pred cCCEEEEEeccCcccc
Q 003698 488 VGMKILGDVVLNHRCA 503 (802)
Q Consensus 488 ~GIkVILD~V~NHt~~ 503 (802)
+||+||+|+|+||++.
T Consensus 82 ~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 82 RGIKVILDVVINHTSD 97 (166)
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999999984
No 41
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.79 E-value=7.6e-19 Score=220.10 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEeCCCCCCC--CCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 003698 425 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 502 (802)
Q Consensus 425 GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~--s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~ 502 (802)
+++|.+++++||||++|||++|||+|||++. ++|||++.||+.|||.|||.++|++||++||++||+||||+|+||++
T Consensus 754 ~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 754 DFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 6899999999999999999999999999974 88999999999999999999999999999999999999999999999
Q ss_pred c
Q 003698 503 A 503 (802)
Q Consensus 503 ~ 503 (802)
.
T Consensus 834 ~ 834 (1693)
T PRK14507 834 V 834 (1693)
T ss_pred C
Confidence 5
No 42
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=7.8e-17 Score=183.28 Aligned_cols=78 Identities=23% Similarity=0.383 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeCCCCCCC--CCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccccc
Q 003698 427 WYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 504 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~PI~es~--s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~ 504 (802)
+|......||||++|||.++|++|||.+. |.||||++|+..|+|.+|+.+.|.+|+.++|++||.+|+|+|+|||+..
T Consensus 17 tF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 17 TFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred CHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhcc
Confidence 59999999999999999999999999987 8999999999999999999999999999999999999999999999987
No 43
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.66 E-value=9.5e-15 Score=178.45 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=77.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEeCCCCC-CCCCCCCCCccCCccCCCCC----CHHHHHHHHHHHHHc-CCEEEEEecc
Q 003698 425 GRWYMELKEKATELSSLGFSVIWLPPPTE-SVSPEGYMPRDLYNLSSRYG----NIDELKDVVNKFHDV-GMKILGDVVL 498 (802)
Q Consensus 425 GGdl~GI~~kLdYLk~LGvtaI~L~PI~e-s~s~hGYd~~Dy~~IDp~~G----t~edfk~LV~~aH~~-GIkVILD~V~ 498 (802)
-|.|....++|+||++||+|+|||+||++ ..++|.|++.||+.|||.|| +.+||++||+++|++ ||++|+|+|+
T Consensus 128 mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~ 207 (1464)
T TIGR01531 128 LGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVF 207 (1464)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 48999999999999999999999999995 45999999999999999994 899999999999997 9999999999
Q ss_pred CcccccCC
Q 003698 499 NHRCAHYQ 506 (802)
Q Consensus 499 NHt~~~~~ 506 (802)
|||+.+|+
T Consensus 208 NHTa~ds~ 215 (1464)
T TIGR01531 208 NHTANNSP 215 (1464)
T ss_pred cccccCCH
Confidence 99999854
No 44
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.66 E-value=4.7e-08 Score=109.13 Aligned_cols=83 Identities=20% Similarity=0.295 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEeCCCCCCC-CCCCCCCccCCccCCCCCCH------HHHHHHHHHHH-HcCCEEEEEe
Q 003698 425 GRWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNI------DELKDVVNKFH-DVGMKILGDV 496 (802)
Q Consensus 425 GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~-s~hGYd~~Dy~~IDp~~Gt~------edfk~LV~~aH-~~GIkVILD~ 496 (802)
-|.|....++|.+++++|+|.|+++|+.+-+ |+.-|.+.|...+||.|... ++++++|.+++ +.||..|.|+
T Consensus 18 ~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv 97 (423)
T PF14701_consen 18 MGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV 97 (423)
T ss_pred cCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE
Confidence 4899999999999999999999999999988 67889999999999988653 69999999995 7999999999
Q ss_pred ccCcccccCCC
Q 003698 497 VLNHRCAHYQN 507 (802)
Q Consensus 497 V~NHt~~~~~~ 507 (802)
|+|||+.+++|
T Consensus 98 V~NHtA~nS~W 108 (423)
T PF14701_consen 98 VLNHTANNSPW 108 (423)
T ss_pred eeccCcCCChH
Confidence 99999999875
No 45
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=98.52 E-value=3.6e-07 Score=103.92 Aligned_cols=133 Identities=20% Similarity=0.262 Sum_probs=96.2
Q ss_pred CCCHHHHHHHHHHHHh---------------cCCCEEEeCCCCCCC----------------------------------
Q 003698 425 GRWYMELKEKATELSS---------------LGFSVIWLPPPTESV---------------------------------- 455 (802)
Q Consensus 425 GGdl~GI~~kLdYLk~---------------LGvtaI~L~PI~es~---------------------------------- 455 (802)
+|+|.|++..-..|.+ .|+++|+|+||=...
T Consensus 192 ~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~~~~d~~~~~~~~~~~~~~~ 271 (811)
T PF14872_consen 192 EGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSIRPEDEDELDPETEGVHEDG 271 (811)
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeeecccccccccccccccccCc
Confidence 6899998876665542 699999999985421
Q ss_pred -----------CCCCCCCc--cCCccCCC-CCC--HHHHHHHHHHHHH---cCCEEEEEeccCcccccCCC-CCCCCccC
Q 003698 456 -----------SPEGYMPR--DLYNLSSR-YGN--IDELKDVVNKFHD---VGMKILGDVVLNHRCAHYQN-QNGVWNIF 515 (802)
Q Consensus 456 -----------s~hGYd~~--Dy~~IDp~-~Gt--~edfk~LV~~aH~---~GIkVILD~V~NHt~~~~~~-~~g~~~~f 515 (802)
.|||||+. -.-+.+|. ++| ++||-.||+.+|. ..|+||+|+|+.|.-+.+.. -++.|
T Consensus 272 ~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVyGHADNQ~~~LLn~~f--- 348 (811)
T PF14872_consen 272 DVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLVYGHADNQALDLLNRRF--- 348 (811)
T ss_pred eEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeecccccchhhHhhhhhh---
Confidence 46888863 33455553 344 6899999999998 46999999999998655431 11221
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEecccccc
Q 003698 516 GGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 586 (802)
Q Consensus 516 ~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~ 586 (802)
+.+..-| .-|+|+.+|.||..+++--+.=+ ++|+||.|+|.+..|
T Consensus 349 -----------------lkGPnMY--------GQdlnhq~P~VRAILLEmQRRK~-n~GaDGIRVDGgQDF 393 (811)
T PF14872_consen 349 -----------------LKGPNMY--------GQDLNHQNPVVRAILLEMQRRKI-NTGADGIRVDGGQDF 393 (811)
T ss_pred -----------------ccCCccc--------cccccccChHHHHHHHHHHHhhc-ccCCceeEecccccc
Confidence 1222111 23699999999999999887777 899999999999743
No 46
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.46 E-value=2.8e-06 Score=97.64 Aligned_cols=185 Identities=22% Similarity=0.345 Sum_probs=111.8
Q ss_pred CCCCCCcccCCChHHHHHHHHHHHHHHh---------hcCCceEEecccccccchhHHH---HHHhc----------CCc
Q 003698 544 NFHAAPNIDHSQDFVRKDIKEWLCWLRN---------EIGYDGWRLDFVRGFWGGYVKD---YLEAT----------EPY 601 (802)
Q Consensus 544 ~~~~lpdln~~np~Vr~~i~~~l~~Wi~---------e~GIDGfRlD~a~~~~~~f~~~---~~~~~----------~p~ 601 (802)
.|--..|+|-+||.|+.+.++|+-|++. +..+||+|+||++.+..+.++. +.++. +..
T Consensus 139 EfLLaNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYgv~~~~a~An~H 218 (809)
T PF02324_consen 139 EFLLANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYGVDKNDANANKH 218 (809)
T ss_dssp S--SSEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-TTTBHHHHCTC
T ss_pred eeEEeccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhCCCcChhhHhhh
Confidence 3445668999999999999999999995 5669999999999999887753 33322 345
Q ss_pred EEEEeecCCCccccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchh-----hhhhhhhcC--CCCCCc
Q 003698 602 FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCE-----YWRLSDEKG--KPPGVV 674 (802)
Q Consensus 602 ~liGE~w~~~~~l~g~mny~~~~~~~~i~~~~~~~~~~~~~fdf~l~~~l~~~~~~~~-----~~~l~~~~~--~~~~~~ 674 (802)
+.|-|.|.... ..|+...++....+|..++..+...+.... +..+..... +.....
T Consensus 219 lSilE~ws~nd-----------------~~y~~~~g~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~d~~ 281 (809)
T PF02324_consen 219 LSILEAWSSND-----------------PDYVKDTGNPQLTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSNDST 281 (809)
T ss_dssp --EESSSTTTH-----------------HHHHHHTTSSSBEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSEE--
T ss_pred heeeeccccCC-----------------hHHHhcCCCceeeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccccCCc
Confidence 77889998631 135555666667788888777766654431 222222100 000000
Q ss_pred CCCCCcceeecccCCCCC-----------cC---cCCC-----------------------CCchHHHHHHHHHHhCC-C
Q 003698 675 GWWPSRAVTFIENHDTGS-----------TQ---GHWR-----------------------FPGGREMQGYAYILTHP-G 716 (802)
Q Consensus 675 ~~~P~~~vnfl~nHDt~R-----------~~---~~~~-----------------------~~~~~~klA~allltlp-G 716 (802)
..-+.....|+.+||.+- +. .-+. +....+..+||+|||-. .
T Consensus 282 en~a~pNYsFvrAHDsevQ~vI~~II~~~i~~~~dg~t~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsaYAllLtNKDT 361 (809)
T PF02324_consen 282 ENEAQPNYSFVRAHDSEVQTVIAQIIKDKINPNSDGLTFTLDQLKQAFEIYNADQKKTDKKYTQYNIPSAYALLLTNKDT 361 (809)
T ss_dssp SSESS-EEEES-BSSTTTHHHHHHHHHHHT-TTTCTTC--HHHHHHHHHHHHHHHTSSS-SSS-S-HHHHHHHHHH-SSS
T ss_pred CCcccCceeeeecccHHHHHHHHHHHHhhcCCcccCccCCHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHhCCCC
Confidence 111123468999999951 00 0000 11234578999999964 9
Q ss_pred eeeEeCCchhH----H------HHHHHHHHHHHHHhCcc
Q 003698 717 TPSVFYDHIFS----H------YRQEIEALLSVRKRNKI 745 (802)
Q Consensus 717 iP~IYyGdE~~----W------l~~~~~~Li~lRk~~~a 745 (802)
+|.|||||.|- . .++.|..|++-|.++-+
T Consensus 362 VPRVYYGDLYtDdGQYMa~KSpYyDaI~tLLKaRikYva 400 (809)
T PF02324_consen 362 VPRVYYGDLYTDDGQYMATKSPYYDAITTLLKARIKYVA 400 (809)
T ss_dssp EEEEEHHHHBESSSSTTTSB-TTHHHHHHHHHHHHHH--
T ss_pred CceEEecccccccchhhhhcCchHHHHHHHHHHHHHhhc
Confidence 99999999872 1 78999999999999854
No 47
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.00 E-value=3.7e-05 Score=84.27 Aligned_cols=141 Identities=14% Similarity=0.127 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeCCCCCCC--CCCCCCCccCCccCCCCC--CHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 003698 427 WYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYG--NIDELKDVVNKFHDVGMKILGDVVLNHRC 502 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~PI~es~--s~hGYd~~Dy~~IDp~~G--t~edfk~LV~~aH~~GIkVILD~V~NHt~ 502 (802)
+-+.+.+.|+.|+++|+|+|++-=-.... ....+.|...+......+ +-+=|+.+|++||++||+|.-=+.+...+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 56789999999999999999974222111 111111211111111111 35679999999999999998766444332
Q ss_pred ccCC-CCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEec
Q 003698 503 AHYQ-NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 581 (802)
Q Consensus 503 ~~~~-~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD 581 (802)
.... ..... ..|...........+. . ......-||-.+|+||++|++.++..++.|.|||..||
T Consensus 97 ~~~~~~~~~~-------p~~~~~~~~~~~~~~~-~-------~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlD 161 (311)
T PF02638_consen 97 PDVSHILKKH-------PEWFAVNHPGWVRTYE-D-------ANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLD 161 (311)
T ss_pred CchhhhhhcC-------chhheecCCCceeecc-c-------CCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEec
Confidence 2100 00000 0110000000000000 0 00122248999999999999999999999999999999
Q ss_pred c
Q 003698 582 F 582 (802)
Q Consensus 582 ~ 582 (802)
-
T Consensus 162 d 162 (311)
T PF02638_consen 162 D 162 (311)
T ss_pred c
Confidence 3
No 48
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.78 E-value=3.8e-05 Score=88.65 Aligned_cols=77 Identities=22% Similarity=0.484 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeCCCCCCC---------CCCCCCCccCCccC----CCCCCHHHHHHHHHHHHHcCCEEE
Q 003698 427 WYMELKEKATELSSLGFSVIWLPPPTESV---------SPEGYMPRDLYNLS----SRYGNIDELKDVVNKFHDVGMKIL 493 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~PI~es~---------s~hGYd~~Dy~~ID----p~~Gt~edfk~LV~~aH~~GIkVI 493 (802)
+-.-|.+..+-+|++|||..+|-|-+.+. -..||.-+|-|.+- ..||+.+||+..|+++|+.||+||
T Consensus 585 tN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptKYGs~~dL~~AikALH~~Giqvi 664 (809)
T PF02324_consen 585 TNVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTKYGSVEDLRNAIKALHAAGIQVI 664 (809)
T ss_dssp HHHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BTTB-HHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCCCCCHHHHHHHHHHHHHcCcchh
Confidence 35679999999999999999999999876 24899999998885 689999999999999999999999
Q ss_pred EEeccCcccc
Q 003698 494 GDVVLNHRCA 503 (802)
Q Consensus 494 LD~V~NHt~~ 503 (802)
-|+|++.+-.
T Consensus 665 aDwVpdQiYn 674 (809)
T PF02324_consen 665 ADWVPDQIYN 674 (809)
T ss_dssp EEE-TSEE--
T ss_pred hhhchHhhhC
Confidence 9999998764
No 49
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.68 E-value=0.00034 Score=66.99 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCC--CCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC--c-ccccCC
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEG--YMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN--H-RCAHYQ 506 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hG--Yd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~N--H-t~~~~~ 506 (802)
.+-+++||++|+|+|-+.- .+-|| |-|+.-....|.++ .+-|+++|++||++||+|+.=+-++ . +...||
T Consensus 3 ~~~~~~lk~~~v~si~i~a----~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HP 77 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFA----KCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHP 77 (132)
T ss_pred HHHHHHHHHhCCCEEEEEc----ccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCC
Confidence 4567899999999998742 11123 55666677789998 7889999999999999999766555 1 122233
Q ss_pred CCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEecc
Q 003698 507 NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 582 (802)
Q Consensus 507 ~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~ 582 (802)
+|.-...... +.... .... .+...+-.+. ..+++++..++..++.|.+||+=||.
T Consensus 78 -------------eW~~~~~~G~-~~~~~---~~~~---~~~~~~c~ns-~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 78 -------------EWFVRDADGR-PMRGE---RFGY---PGWYTCCLNS-PYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred -------------ceeeECCCCC-CcCCC---CcCC---CCceecCCCc-cHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 2221000000 00000 0000 0111122223 45699999999999889999998884
No 50
>PF07821 Alpha-amyl_C2: Alpha-amylase C-terminal beta-sheet domain; InterPro: IPR012850 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C terminus. This domain is organised as a five-stranded anti-parallel beta-sheet [, ]. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0005975 carbohydrate metabolic process; PDB: 1AVA_B 1BG9_A 1AMY_A 1RP8_A 2QPU_A 3BSG_A 2QPS_A 3BSH_A 1RP9_A 1HT6_A ....
Probab=97.56 E-value=0.00019 Score=58.31 Aligned_cols=57 Identities=58% Similarity=1.116 Sum_probs=44.9
Q ss_pred CccccCCCeeEEeeCCCEEEEEECCEEEEEEeCCCCCCCCCCCCeEEEEcCCCeEEEec
Q 003698 743 NKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWSFVTEGRDYKVWEA 801 (802)
Q Consensus 743 ~~al~~G~~~~l~~~~~v~a~~r~~~~lvvinn~~~~~~~~~~~~~~~~~g~~~~vw~~ 801 (802)
+-..++..++++.++.++|+...+++++|-|++.+..| ++ .+|++++.|.+|.||++
T Consensus 3 ~gI~~~S~v~I~~Ae~d~YaA~Id~kv~~KiGp~~~~P-~~-~~w~~a~~G~dyaVWek 59 (59)
T PF07821_consen 3 NGIHCRSKVKILAAEADLYAAIIDDKVIMKIGPRDWSP-SG-SGWKLAASGDDYAVWEK 59 (59)
T ss_dssp TT--TT--EEEEEEETTEEEEEETTTEEEEESS-GGS-----TTEEEEEEETTEEEEEE
T ss_pred cccCCCCceEEEEecCCcEEEEECCeEEEEECCCcccc-CC-CCcEEEeECCcEEEEeC
Confidence 34456788999999999999999999999999999988 44 46999999999999986
No 51
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.00028 Score=83.27 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCCCCC-CCCCCCCccCCccCCCCC------CHHHHHHHHHHHHHc-CCEEEEEec
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYG------NIDELKDVVNKFHDV-GMKILGDVV 497 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~es~-s~hGYd~~Dy~~IDp~~G------t~edfk~LV~~aH~~-GIkVILD~V 497 (802)
|-|.....+|.-.|+-|.|.|+++|+.+-+ ++.-|...|-..+++.|- +.+|.++||+.+|+- ||--|-|+|
T Consensus 139 Gpl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~DvV 218 (1521)
T KOG3625|consen 139 GPLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITDVV 218 (1521)
T ss_pred CChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeehhh
Confidence 667788999999999999999999999987 788899999999999987 789999999999874 999999999
Q ss_pred cCcccccCC
Q 003698 498 LNHRCAHYQ 506 (802)
Q Consensus 498 ~NHt~~~~~ 506 (802)
+|||+..++
T Consensus 219 ~NHtAnns~ 227 (1521)
T KOG3625|consen 219 YNHTANNSK 227 (1521)
T ss_pred hhccccCCc
Confidence 999999864
No 52
>smart00810 Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C-terminus. This domain is organised as a five-stranded anti-parallel beta-sheet.
Probab=97.20 E-value=0.0017 Score=53.33 Aligned_cols=58 Identities=43% Similarity=0.698 Sum_probs=46.8
Q ss_pred ccccCCCeeEEeeCCCEEEEEECCEEEEEEeCCCCCCCCCCCCeEEEEcCCCeEEEec
Q 003698 744 KIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWSFVTEGRDYKVWEA 801 (802)
Q Consensus 744 ~al~~G~~~~l~~~~~v~a~~r~~~~lvvinn~~~~~~~~~~~~~~~~~g~~~~vw~~ 801 (802)
-..++.+.+++.++.++|+...+++++|-|++.-......+.+|++++.|.+|.||++
T Consensus 4 gI~~~S~v~I~~Ae~dlY~A~Id~kv~~KiGp~~~~~~~~P~~w~~a~sG~~yaVWek 61 (61)
T smart00810 4 GIHSRSSLKILAAEADLYVAMIDEKVIMKIGPRYDVGNLIPSGFHLAASGNDYAVWEK 61 (61)
T ss_pred ccCCCCceEEEEecCCcEEEEeCCeEEEEECCCCCcCccCCCCCEEEEECCCEEEEeC
Confidence 3456788999999999999999999999999963222112345999999999999986
No 53
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.0018 Score=72.79 Aligned_cols=143 Identities=16% Similarity=0.128 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCCCCC--CCCCCCCc-cCC-ccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcc
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPR-DLY-NLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 501 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~es~--s~hGYd~~-Dy~-~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt 501 (802)
.+=..+.+.|+.|+.||||+||..=.-... ....+.+. ++. -+-..-++-+=|+.+|++||++||+|+-=+-+--+
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~ 140 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRM 140 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhccc
Confidence 455679999999999999999953221111 00111111 000 00001233467899999999999999754444333
Q ss_pred cccCCCCCCCCccCCCC-CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEe
Q 003698 502 CAHYQNQNGVWNIFGGR-LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 580 (802)
Q Consensus 502 ~~~~~~~~g~~~~f~g~-~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRl 580 (802)
+.... ..... ..|.....+ +.-+..+.+ +....-||-..|+||++|.+.+..-++.|.|||.-|
T Consensus 141 a~~~s-------~~~~~~p~~~~~~~~-~~~~~~~~~-------~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQf 205 (418)
T COG1649 141 APPTS-------PLTKRHPHWLTTKRP-GWVYVRHQG-------WGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQF 205 (418)
T ss_pred CCCCC-------hhHhhCCCCcccCCC-CeEEEecCC-------ceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceec
Confidence 32211 00000 011100000 000000010 002344888999999999999999999999999999
Q ss_pred ccc
Q 003698 581 DFV 583 (802)
Q Consensus 581 D~a 583 (802)
|--
T Consensus 206 Dd~ 208 (418)
T COG1649 206 DDY 208 (418)
T ss_pred cee
Confidence 854
No 54
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=96.80 E-value=0.047 Score=63.69 Aligned_cols=43 Identities=14% Similarity=-0.028 Sum_probs=33.0
Q ss_pred CCHH-HHHHHHHHHHhcCCCEEEeCCCCCCC-CCCCCCCccCCcc
Q 003698 426 RWYM-ELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNL 468 (802)
Q Consensus 426 Gdl~-GI~~kLdYLk~LGvtaI~L~PI~es~-s~hGYd~~Dy~~I 468 (802)
|||. ++.+-++.+++.|++.|+|+|+.... .+..|.+.+-+.+
T Consensus 23 GDfg~dl~~~id~~~~~G~~~~qilPl~~~~~~~SPY~~~S~~al 67 (497)
T PRK14508 23 GDFGKGAYEFIDFLAEAGQSYWQILPLGPTGYGDSPYQSFSAFAG 67 (497)
T ss_pred cchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCccccccc
Confidence 9995 99999999999999999999999855 2234554433333
No 55
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=96.79 E-value=0.0023 Score=56.63 Aligned_cols=46 Identities=7% Similarity=0.108 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhCccccCCCeeEEee----CCCEEEEEE--CC-EEEEEEeCCC
Q 003698 732 EIEALLSVRKRNKIHCRSRVEIVKA----ERDVYAAII--DE-KVAMKLGPGH 777 (802)
Q Consensus 732 ~~~~Li~lRk~~~al~~G~~~~l~~----~~~v~a~~r--~~-~~lvvinn~~ 777 (802)
+||+||+|||++|+|+.|.+..+.. ++.++++.| ++ .++|++|.+.
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~ 53 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSD 53 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCC
Confidence 6999999999999999998887763 446777777 44 5555555554
No 56
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.57 E-value=0.02 Score=62.66 Aligned_cols=136 Identities=18% Similarity=0.169 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHhcCC--CEEEeCCCCCCCCCCCCCCccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 003698 426 RWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 502 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGv--taI~L~PI~es~s~hGYd~~Dy~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~ 502 (802)
-+-+.|.+.++.++++|| ++|+|=-=+... . .| +..|+ +|- +.++||+++|++|+|+++=+-+ +++
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~--~----g~-f~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~P-~i~ 95 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWETC--Y----GD-FDFDPTKFP---DPKGMIDQLHDLGFRVTLWVHP-FIN 95 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCcccc--C----Cc-cccChhhCC---CHHHHHHHHHHCCCeEEEEECC-eeC
Confidence 456788899999999995 577764322111 1 13 34554 665 4789999999999999998877 444
Q ss_pred ccCCCCC-CCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEec
Q 003698 503 AHYQNQN-GVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 581 (802)
Q Consensus 503 ~~~~~~~-g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD 581 (802)
.+++... +.- .+ .|-.. .....+ +. + ..+. ....-+|+.||++++.+.+.++.++.+.|||||-+|
T Consensus 96 ~~s~~~~e~~~---~g--~~vk~-~~g~~~-~~--~--~~w~--g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D 162 (303)
T cd06592 96 TDSENFREAVE---KG--YLVSE-PSGDIP-AL--T--RWWN--GTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFD 162 (303)
T ss_pred CCCHHHHhhhh---CC--eEEEC-CCCCCC-cc--c--ceec--CCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeC
Confidence 3332100 000 00 00000 000000 00 0 0000 113358999999999999999999989999999999
Q ss_pred cccc
Q 003698 582 FVRG 585 (802)
Q Consensus 582 ~a~~ 585 (802)
....
T Consensus 163 ~~E~ 166 (303)
T cd06592 163 AGEA 166 (303)
T ss_pred CCCc
Confidence 8753
No 57
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=96.30 E-value=0.025 Score=62.10 Aligned_cols=140 Identities=16% Similarity=0.076 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHhcC--CCEEEeCCCCCCCCCCCCCCccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 003698 426 RWYMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 502 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LG--vtaI~L~PI~es~s~hGYd~~Dy~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~ 502 (802)
.+-+.+.+.++.+++.| +++|+|=.=+.. +|.-.| +..|+ +|.. .++||+++|++||+|++-+.+ +++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~----~~~~~~-f~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~i~ 91 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMK----EFQWCD-FEFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-YIA 91 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEeccccc----CCccee-eEECcccCCC---HHHHHHHHHHCCCeEEEEecC-CCC
Confidence 46678889999999999 667887654432 222123 45563 7764 689999999999999999875 555
Q ss_pred ccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEecc
Q 003698 503 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 582 (802)
Q Consensus 503 ~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~ 582 (802)
.+++. |..... ..|.-. ..+...+.. ..|. ....-+|+.||++++.+.+.++.++ +.|||||-+|.
T Consensus 92 ~~~~~----~~e~~~-~g~~v~--~~~g~~~~~----~~w~--g~~~~~Dftnp~a~~w~~~~~~~~~-~~Gid~~~~D~ 157 (308)
T cd06593 92 QKSPL----FKEAAE-KGYLVK--KPDGSVWQW----DLWQ--PGMGIIDFTNPDACKWYKDKLKPLL-DMGVDCFKTDF 157 (308)
T ss_pred CCchh----HHHHHH-CCeEEE--CCCCCeeee----cccC--CCcccccCCCHHHHHHHHHHHHHHH-HhCCcEEecCC
Confidence 44421 000000 000000 000000000 0011 1223479999999999999999888 79999999998
Q ss_pred cccccc
Q 003698 583 VRGFWG 588 (802)
Q Consensus 583 a~~~~~ 588 (802)
...++.
T Consensus 158 ~e~~p~ 163 (308)
T cd06593 158 GERIPT 163 (308)
T ss_pred CCCCCc
Confidence 876544
No 58
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=96.13 E-value=0.072 Score=60.35 Aligned_cols=137 Identities=19% Similarity=0.143 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCC-CCCCCCCCCCCCccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCcccccC
Q 003698 428 YMELKEKATELSSLGFSVIWLPP-PTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 505 (802)
Q Consensus 428 l~GI~~kLdYLk~LGvtaI~L~P-I~es~s~hGYd~~Dy~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~~ 505 (802)
-+.|.+.++.++++|++.+.|== -|......--...|. .+|+ +|. ..|+.|++.+|++||+.=|=+-+--++.++
T Consensus 57 e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW-~~~~~kFP--~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S 133 (394)
T PF02065_consen 57 EEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDW-EPDPKKFP--NGLKPLADYIHSLGMKFGLWFEPEMVSPDS 133 (394)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBE-CBBTTTST--THHHHHHHHHHHTT-EEEEEEETTEEESSS
T ss_pred HHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCce-eEChhhhC--CcHHHHHHHHHHCCCeEEEEeccccccchh
Confidence 45688888899999999887621 111111110011232 3443 563 359999999999999998888776666555
Q ss_pred CCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEeccccc
Q 003698 506 QNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG 585 (802)
Q Consensus 506 ~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~ 585 (802)
...... .+|--.. .+.. ... ....--||+.+|+|++++.+.+..+++++|||.+.+|....
T Consensus 134 ~l~~~h-------Pdw~l~~--~~~~-------~~~---~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~ 194 (394)
T PF02065_consen 134 DLYREH-------PDWVLRD--PGRP-------PTL---GRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRD 194 (394)
T ss_dssp CHCCSS-------BGGBTCC--TTSE--------EC---BTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-
T ss_pred HHHHhC-------ccceeec--CCCC-------CcC---cccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccC
Confidence 321111 1221100 0000 000 01122499999999999999999888899999999998754
Q ss_pred c
Q 003698 586 F 586 (802)
Q Consensus 586 ~ 586 (802)
+
T Consensus 195 ~ 195 (394)
T PF02065_consen 195 I 195 (394)
T ss_dssp T
T ss_pred C
Confidence 3
No 59
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.07 E-value=0.048 Score=60.74 Aligned_cols=145 Identities=18% Similarity=0.223 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHhcCC--CEEEeCCCCCCCC-----CCCCCCc------cC--CccC--CCCCCHHHHHHHHHHHHHcC
Q 003698 427 WYMELKEKATELSSLGF--SVIWLPPPTESVS-----PEGYMPR------DL--YNLS--SRYGNIDELKDVVNKFHDVG 489 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGv--taI~L~PI~es~s-----~hGYd~~------Dy--~~ID--p~~Gt~edfk~LV~~aH~~G 489 (802)
+-+.+.+.++.+++.|| ++|+|=+-+.... +..|... .| +..| .+|- +.++||+++|++|
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FP---dp~~mi~~Lh~~G 98 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWP---NPKGMIDELHEQG 98 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCC---CHHHHHHHHHHCC
Confidence 57788999999999886 7888864221110 1112110 00 0111 1233 6899999999999
Q ss_pred CEEEEEeccCccccc-CCCCCCCCccCCCCCCCCCCcccCCCCCC--CCCCCCCC--CCCCCCCCcccCCChHHHHHHHH
Q 003698 490 MKILGDVVLNHRCAH-YQNQNGVWNIFGGRLNWDDRAVVADDPHF--QGRGNKSS--GDNFHAAPNIDHSQDFVRKDIKE 564 (802)
Q Consensus 490 IkVILD~V~NHt~~~-~~~~~g~~~~f~g~~~w~~~~~~~~~~~f--~~~~~~~~--~~~~~~lpdln~~np~Vr~~i~~ 564 (802)
+||++=+.+. +..+ ++. ...+..|.. ... ..+| +..+.... .+......-+|+.||++++...+
T Consensus 99 ~kv~l~v~P~-i~~~~~~~-~~~~~~~~~-------~~~--~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~ 167 (340)
T cd06597 99 VKVLLWQIPI-IKLRPHPH-GQADNDEDY-------AVA--QNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWME 167 (340)
T ss_pred CEEEEEecCc-cccccccc-cccchhHHH-------HHH--CCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHH
Confidence 9999855442 2211 110 000000000 000 0000 00111000 01011223489999999999999
Q ss_pred HHHHHHhhcCCceEEeccccc
Q 003698 565 WLCWLRNEIGYDGWRLDFVRG 585 (802)
Q Consensus 565 ~l~~Wi~e~GIDGfRlD~a~~ 585 (802)
.++.+++++|||||-+|+...
T Consensus 168 ~~~~~~~~~Gidg~w~D~~E~ 188 (340)
T cd06597 168 KRRYLVDELGIDGFKTDGGEH 188 (340)
T ss_pred HHHHHHHhcCCcEEEecCCCc
Confidence 999999789999999998753
No 60
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.52 E-value=0.096 Score=57.80 Aligned_cols=138 Identities=15% Similarity=0.069 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhcCC--CEEEeCCCCCCCCCCCCCCccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCccccc
Q 003698 428 YMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 504 (802)
Q Consensus 428 l~GI~~kLdYLk~LGv--taI~L~PI~es~s~hGYd~~Dy~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~ 504 (802)
=+.+.+.++.+++.|| ++|+|-+=+... .+..-.+ +..|+ +|- +.++||+++|++|+||++-+.+- ++.+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~--~~~~~~~-f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P~-i~~~ 100 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSI--EGGKRYV-FNWNKDRFP---DPAAFVAKFHERGIRLAPNIKPG-LLQD 100 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecccccc--CCCceee-eecCcccCC---CHHHHHHHHHHCCCEEEEEeCCc-ccCC
Confidence 3568888889999886 788875422111 0100011 34453 565 57799999999999999965443 3333
Q ss_pred CCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEecccc
Q 003698 505 YQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 584 (802)
Q Consensus 505 ~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~ 584 (802)
++. |..... ..+.-...... ..+. +.. +.+ ...-+|+.||+.++...+.++..+.+.|||||-+|...
T Consensus 101 ~~~----y~e~~~-~g~~v~~~~g~-~~~~--~~~--w~g--~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 101 HPR----YKELKE-AGAFIKPPDGR-EPSI--GQF--WGG--VGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred CHH----HHHHHH-CCcEEEcCCCC-Ccce--ecc--cCC--CeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 321 000000 00000000000 0000 000 111 12248999999999999988655558999999999764
No 61
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=95.31 E-value=0.11 Score=56.94 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCC---CCCccCCc--cCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEG---YMPRDLYN--LSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 500 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hG---Yd~~Dy~~--IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NH 500 (802)
|+=..+.+.|+.+++-|+|++-+ +-...+| |....-.. +...-....|+++|++++|++||.+|.=+|.=
T Consensus 10 ~~~~~~~~~~~~i~~t~lNavVI----DvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~F- 84 (316)
T PF13200_consen 10 GSPERLDKLLDLIKRTELNAVVI----DVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVF- 84 (316)
T ss_pred CCHHHHHHHHHHHHhcCCceEEE----EEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEe-
Confidence 55567888899999999999975 2223344 33321111 11111124689999999999999999998751
Q ss_pred ccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEe
Q 003698 501 RCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 580 (802)
Q Consensus 501 t~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRl 580 (802)
.+....... .+|.- . ...| ..|.+..+..=+|-.+++||+|++++++... ..|+|..-|
T Consensus 85 --kD~~la~~~-------pe~av---~------~~~G--~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa-~~GFdEIqf 143 (316)
T PF13200_consen 85 --KDPVLAEAH-------PEWAV---K------TKDG--SVWRDNEGEAWVNPYSKEVWDYNIDIAKEAA-KLGFDEIQF 143 (316)
T ss_pred --cChHHhhhC-------hhhEE---E------CCCC--CcccCCCCCccCCCCCHHHHHHHHHHHHHHH-HcCCCEEEe
Confidence 111100000 01110 0 0011 1122223344588899999999999999998 899999999
Q ss_pred cccc
Q 003698 581 DFVR 584 (802)
Q Consensus 581 D~a~ 584 (802)
|-+.
T Consensus 144 DYIR 147 (316)
T PF13200_consen 144 DYIR 147 (316)
T ss_pred eeee
Confidence 9885
No 62
>PLN02316 synthase/transferase
Probab=95.20 E-value=0.11 Score=65.26 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=47.0
Q ss_pred CCCeEEEeeeecCCCCCcccCCCCCCCCcceeccccccccccccC--CCCcceeeEeecCceeeeEEEEEcCc----ccc
Q 003698 214 TGDVVVHWGVCRDDSKNWEIPAEPYPPETIVFKNKALRTLLQPKE--GGKGCSRLFTVDEEFAGFLFVLKLNE----NTW 287 (802)
Q Consensus 214 ~~~~~lHWgv~~~~~~~W~~pp~~~~p~~~~~~~~a~~T~~~~~~--~~~~~~~~~~~~~~~~~~~Fvl~~~~----~~W 287 (802)
..+|.||+|..+ |.-.++- .++ +.+.+ +|+-.+..+.+...--=|-||+-++. +.|
T Consensus 345 ~~~v~i~gg~N~-----W~~~~~~------------~~~-~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~~~~~~~y 406 (1036)
T PLN02316 345 STEIWIHGGYNN-----WIDGLSI------------VEK-LVKSEEKDGDWWYAEVVVPERALVLDWVFADGPPGNARNY 406 (1036)
T ss_pred CCcEEEEEeEcC-----CCCCCcc------------cce-eecccCCCCCEEEEEEecCCCceEEEEEEecCCccccccc
Confidence 569999999876 5332221 111 12222 34434445777555556999999872 689
Q ss_pred cccCCCceeEeCCCC
Q 003698 288 LKCMENDFYIPLTSS 302 (802)
Q Consensus 288 ~k~~g~df~v~~~~~ 302 (802)
=+|+|.||+++.+.+
T Consensus 407 DNn~~~Dyh~~v~~~ 421 (1036)
T PLN02316 407 DNNGRQDFHAIVPNN 421 (1036)
T ss_pred ccCCCcceeeecCCC
Confidence 999999999999864
No 63
>PLN02316 synthase/transferase
Probab=94.85 E-value=0.29 Score=61.45 Aligned_cols=195 Identities=10% Similarity=0.132 Sum_probs=96.8
Q ss_pred eeEEEEecCCCCCceeeEEEEEeCC---ccchhccCCCceeeeccccccCCCcccccccccccccchHHHHHHHhhhccC
Q 003698 75 FDQVNIDFDTRSDIAAINFVLKDEE---TGAWYQHRGRDFKVPLVDYLQHDGNVIGTKSTFGLWPGALGQLSKMILKADT 151 (802)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~fvl~~~~---~~~w~~~~g~~f~v~l~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~ 151 (802)
.-..+|.++ ...--|.||+-|+. .+.|=+|+|.||++++++...+..-.+. .+. -.+++|..+-...++
T Consensus 377 ww~a~v~vP--~~A~~mDfVFsdg~~~~~~~yDNn~~~Dyh~~v~~~~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~ 448 (1036)
T PLN02316 377 WWYAEVVVP--ERALVLDWVFADGPPGNARNYDNNGRQDFHAIVPNNIPEELYWVE-EEH-----QIYRKLQEERRLREE 448 (1036)
T ss_pred EEEEEEecC--CCceEEEEEEecCCcccccccccCCCcceeeecCCCCchhhhhHH-HHH-----HHHHHHHHHHHhhHH
Confidence 455666665 44778999999984 5689999999999999986533210111 000 122233321111111
Q ss_pred CCCCccCCCcccccchhhhhhhhccccccCceeEEEecceEEEEEeeCCCCC-ceEEEEE-----cCCCCCeEEEeeeec
Q 003698 152 SQSGIQDSSSESCELKQENKHLEGFYEELPIVKEIIIENTVSVSVRKCPETA-KTLLNLE-----TDLTGDVVVHWGVCR 225 (802)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~-~~~~~~~-----t~~~~~~~lHWgv~~ 225 (802)
.. +.-.+....++.-..+-.+..-+.-+..+.-+....+..| .+.|.-- -+....+-||||-.+
T Consensus 449 ~~----------r~k~~~~a~~~ae~k~~~~~~~l~~~~~~~~teP~~~~aG~~v~v~Yn~~~t~l~~~~ev~~~g~~Nr 518 (1036)
T PLN02316 449 AI----------RAKAEKTARMKAEMKEKTLKMFLLSQKHIVYTEPLEVQAGTTVTVLYNPANTVLNGKPEVWFRGSFNR 518 (1036)
T ss_pred HH----------HHHHHHHHHHHHHHHHHHHHhhhhccceEEEecCCCCCCCCEEEEEECCCCCcCCCCceEEEEccccC
Confidence 00 0000011111110000001111111112222222222222 2222221 123557888988765
Q ss_pred CCCCCcccCCCCCCCCcceeccccccccccccCCCCcceeeEeecCceeeeEEEEEcC--cccccccCCCceeEeCCCCC
Q 003698 226 DDSKNWEIPAEPYPPETIVFKNKALRTLLQPKEGGKGCSRLFTVDEEFAGFLFVLKLN--ENTWLKCMENDFYIPLTSSS 303 (802)
Q Consensus 226 ~~~~~W~~pp~~~~p~~~~~~~~a~~T~~~~~~~~~~~~~~~~~~~~~~~~~Fvl~~~--~~~W~k~~g~df~v~~~~~~ 303 (802)
|.-+.+.++|- -+++.++|......+.+...---|-||+.++ +++|=+++|.||++|+..+.
T Consensus 519 -----Wth~~~~~~~~-----------~m~~~~~g~~~~a~v~vP~da~~mdfvFs~~~~g~~yDn~~~~dyh~~v~g~~ 582 (1036)
T PLN02316 519 -----WTHRLGPLPPQ-----------KMVPADNGSHLKATVKVPLDAYMMDFVFSEKEEGGIFDNRNGLDYHIPVFGGI 582 (1036)
T ss_pred -----cCCCCCCCCce-----------eeeecCCCceEEEEEEccccceEEEEEEecCCCCCCcCCCCCcCCcccccCCC
Confidence 76665555554 1233344533334466643344489999775 67888899999999998653
No 64
>PLN02635 disproportionating enzyme
Probab=94.69 E-value=0.31 Score=57.29 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCEEEEEecc
Q 003698 476 DELKDVVNKFHDVGMKILGDVVL 498 (802)
Q Consensus 476 edfk~LV~~aH~~GIkVILD~V~ 498 (802)
.++++|-+.||++||+||.|+-+
T Consensus 224 ~Qw~~l~~yA~~~Gi~L~gDlpi 246 (538)
T PLN02635 224 RQWQAVRSYANEKGISIIGDMPI 246 (538)
T ss_pred HHHHHHHHHHHHCCCEEEEEeec
Confidence 47889999999999999999986
No 65
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=94.43 E-value=0.067 Score=59.04 Aligned_cols=143 Identities=15% Similarity=0.187 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHhcCC--CEEEeCCCCCC--CCCCCCC-CccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 003698 426 RWYMELKEKATELSSLGF--SVIWLPPPTES--VSPEGYM-PRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLN 499 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGv--taI~L~PI~es--~s~hGYd-~~Dy~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD~V~N 499 (802)
++-+.+.+.++.+++.|| ++|||- .... ....||. -.| +..|+ +|- +.++||+++|++|++||+-+. .
T Consensus 20 ~s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i~-P 93 (317)
T cd06594 20 GGTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTYIN-P 93 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEEec-C
Confidence 378889999999999876 678885 3211 0112221 112 35555 554 478999999999999999554 4
Q ss_pred cccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEE
Q 003698 500 HRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 579 (802)
Q Consensus 500 Ht~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfR 579 (802)
++..++... |..-.. ..+.- ...+...+.. ..|. ....-+|+.||++++...+.++..+.++|||||-
T Consensus 94 ~v~~~~~~~---y~~~~~-~g~~v--k~~~g~~~~~----~~w~--g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w 161 (317)
T cd06594 94 YLADDGPLY---YEEAKD-AGYLV--KDADGSPYLV----DFGE--FDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWM 161 (317)
T ss_pred ceecCCchh---HHHHHH-CCeEE--ECCCCCeeee----ccCC--CCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEE
Confidence 444332210 000000 00000 0000000100 0011 1224589999999999999988775589999999
Q ss_pred ecccccc
Q 003698 580 LDFVRGF 586 (802)
Q Consensus 580 lD~a~~~ 586 (802)
+|+...+
T Consensus 162 ~D~~E~~ 168 (317)
T cd06594 162 ADFGEYL 168 (317)
T ss_pred ecCCCCC
Confidence 9976543
No 66
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=94.33 E-value=0.17 Score=59.71 Aligned_cols=141 Identities=16% Similarity=0.200 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCcc-----CCCC-------CCHHHHHHHHHHHHHcCCEEE
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNL-----SSRY-------GNIDELKDVVNKFHDVGMKIL 493 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~I-----Dp~~-------Gt~edfk~LV~~aH~~GIkVI 493 (802)
.+.....+.|+.|+..-||+|++== |-|.-...+.- ++.+ =..+-+|.+|++||+.||+.|
T Consensus 115 ~~~~~~~~~i~~L~~yHIN~~QFYD-------W~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam 187 (559)
T PF13199_consen 115 KSAEDIEAEIDQLNRYHINGLQFYD-------WMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAM 187 (559)
T ss_dssp GGHHHHHHHHHHHHHTT--EEEETS---------SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEE
T ss_pred CCchhHHHHHHHHHhhCcCeEEEEe-------eccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCccee
Confidence 3678899999999999999999732 22211111111 1222 235689999999999999999
Q ss_pred EEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCC-CCCcccCCChHHHHHHHHHHHHHHhh
Q 003698 494 GDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-AAPNIDHSQDFVRKDIKEWLCWLRNE 572 (802)
Q Consensus 494 LD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~-~lpdln~~np~Vr~~i~~~l~~Wi~e 572 (802)
.=.-+.-...+. ...|.- ..|.-....... .+. .+.....+. .+-=+|..|+.-|+||++-++..++.
T Consensus 188 ~Ynmiyaa~~~~-~~~gv~------~eW~ly~d~~~~-~~~---~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~ 256 (559)
T PF13199_consen 188 AYNMIYAANNNY-EEDGVS------PEWGLYKDDSHS-NQD---TYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQN 256 (559)
T ss_dssp EEEESSEEETT---S--SS-------GGBEEESSSBT-SB----EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHH
T ss_pred hhHhhhccccCc-ccccCC------chhhhhhccCCC-ccc---eeecCcccccceEEecCCCHHHHHHHHHHHHHHHHc
Confidence 754433221111 011110 112111000000 000 000000011 13347889999999999999999999
Q ss_pred cCCceEEecccc
Q 003698 573 IGYDGWRLDFVR 584 (802)
Q Consensus 573 ~GIDGfRlD~a~ 584 (802)
+|+|||.+|...
T Consensus 257 ~gFDG~hlDq~G 268 (559)
T PF13199_consen 257 FGFDGWHLDQLG 268 (559)
T ss_dssp HT--EEEEE-S-
T ss_pred cCCceEeeeccC
Confidence 999999999874
No 67
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=93.20 E-value=0.61 Score=51.96 Aligned_cols=139 Identities=14% Similarity=0.184 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHhcCC--CEEEeCCCCCCCCCCCCCCccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 003698 427 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 503 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGv--taI~L~PI~es~s~hGYd~~Dy~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~ 503 (802)
+-+.+.+.++.+++.|| ++|||-.-+.. +|. | +..|+ +|-.+. .++||+++|++|+||++=+.+ |+..
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~--~-f~~d~~~FPdp~-~~~mi~~L~~~G~k~~~~i~P-~v~~ 92 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRR--D-FTLDPVRFPGLK-MPEFVDELHANGQHYVPILDP-AISA 92 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECccccc----Ccc--c-eecccccCCCcc-HHHHHHHHHHCCCEEEEEEeC-cccc
Confidence 45778888888888775 67777432211 111 1 23333 343321 289999999999999997643 3332
Q ss_pred cCCCCCCCCccCCCC--CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEec
Q 003698 504 HYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 581 (802)
Q Consensus 504 ~~~~~~g~~~~f~g~--~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD 581 (802)
+.. ...+..|... ..+. ........+.+ ..|.+ ...-+|+.||++++...+.++.++.++|||||-+|
T Consensus 93 ~~~--~~~~~~~~e~~~~g~~--v~~~~g~~~~~----~~w~g--~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D 162 (339)
T cd06602 93 NEP--TGSYPPYDRGLEMDVF--IKNDDGSPYIG----KVWPG--YTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWID 162 (339)
T ss_pred CcC--CCCCHHHHHHHHCCeE--EECCCCCEEEE----EeCCC--CCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEec
Confidence 210 0111111100 0000 00000000000 01111 11236899999999999999988877999999999
Q ss_pred ccc
Q 003698 582 FVR 584 (802)
Q Consensus 582 ~a~ 584 (802)
...
T Consensus 163 ~~E 165 (339)
T cd06602 163 MNE 165 (339)
T ss_pred CCC
Confidence 865
No 68
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=93.09 E-value=0.16 Score=56.14 Aligned_cols=136 Identities=16% Similarity=0.173 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHhc--CCCEEEeCCCCCCCCCCCCCCccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 003698 426 RWYMELKEKATELSSL--GFSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 502 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~L--GvtaI~L~PI~es~s~hGYd~~Dy~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~ 502 (802)
.+-+.+.+.++.+++. -+++|+|=--+ ....|+ .| +..|+ +|-. .++||+++|++|+|||+-+. -+++
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~--~~~~~~--~~-f~~d~~~FPd---p~~mi~~L~~~G~kv~~~i~-P~v~ 91 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWFY--WPKQGW--GE-WKFDPERFPD---PKAMVRELHEMNAELMISIW-PTFG 91 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEechh--hcCCCc--ee-EEEChhhCCC---HHHHHHHHHHCCCEEEEEec-CCcC
Confidence 4667788888888876 55777774111 111221 12 44554 5654 57899999999999999554 3444
Q ss_pred ccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEecc
Q 003698 503 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 582 (802)
Q Consensus 503 ~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~ 582 (802)
.++.. |..... ..+. +... .+......+. ....-+|+.||+.++...+.++..+.++|||||-+|.
T Consensus 92 ~~~~~----y~e~~~-~g~~---v~~~----~g~~~~~~w~--g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~ 157 (319)
T cd06591 92 PETEN----YKEMDE-KGYL---IKTD----RGPRVTMQFG--GNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDA 157 (319)
T ss_pred CCChh----HHHHHH-CCEE---EEcC----CCCeeeeeCC--CCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecC
Confidence 33321 000000 0000 0000 0000000011 1123589999999998877766444489999999999
Q ss_pred cc
Q 003698 583 VR 584 (802)
Q Consensus 583 a~ 584 (802)
..
T Consensus 158 ~E 159 (319)
T cd06591 158 AE 159 (319)
T ss_pred CC
Confidence 86
No 69
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=93.05 E-value=0.19 Score=53.46 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=52.0
Q ss_pred CcceeEEeeeeecCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCCCCC--CCCCCCCccCCccCCCCCCHHHHHHHHHHH
Q 003698 408 TGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKF 485 (802)
Q Consensus 408 ~~y~~~~~~F~Wd~~~~GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~--s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~a 485 (802)
.|.++..++|... ...+. -+.+-++.|+++|+|+|=|.-..... ...+| .+++ ...+.|+++|++|
T Consensus 4 ~G~~v~~~G~n~~---w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~------~~~~--~~~~~ld~~v~~a 71 (281)
T PF00150_consen 4 NGKPVNWRGFNTH---WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY------NYDE--TYLARLDRIVDAA 71 (281)
T ss_dssp TSEBEEEEEEEET---TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT------SBTH--HHHHHHHHHHHHH
T ss_pred CCCeEEeeeeecc---cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc------cccH--HHHHHHHHHHHHH
Confidence 3556778888743 11112 57788999999999999986553111 01111 1111 2357899999999
Q ss_pred HHcCCEEEEEeccC
Q 003698 486 HDVGMKILGDVVLN 499 (802)
Q Consensus 486 H~~GIkVILD~V~N 499 (802)
+++||+||+|+--.
T Consensus 72 ~~~gi~vild~h~~ 85 (281)
T PF00150_consen 72 QAYGIYVILDLHNA 85 (281)
T ss_dssp HHTT-EEEEEEEES
T ss_pred HhCCCeEEEEeccC
Confidence 99999999987554
No 70
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=92.98 E-value=0.4 Score=55.23 Aligned_cols=137 Identities=25% Similarity=0.346 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHhcCC--CEEEeCCCCCCCCCCCCCCccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 003698 426 RWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 502 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGv--taI~L~PI~es~s~hGYd~~Dy~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~ 502 (802)
.+-..+.+.++.+++.|| ++|+|-.-+.. +|. | +..|+ +|- ++++|++.+|++|++|++-+.+ ++.
T Consensus 40 ~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~----~~~--~-f~~d~~~FP---d~~~~~~~l~~~G~~~~~~~~P-~v~ 108 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSNGIPLDVIWIDDDYQD----GYG--D-FTWDPERFP---DPKQMIDELHDQGIKVVLWVHP-FVS 108 (441)
T ss_dssp TSHHHHHHHHHHHHHTT--EEEEEE-GGGSB----TTB--T-T-B-TTTTT---THHHHHHHHHHTT-EEEEEEES-EEE
T ss_pred CCHHHHHHHHHHHHHcCCCccceeccccccc----ccc--c-ccccccccc---chHHHHHhHhhCCcEEEEEeec-ccC
Confidence 356778888888888776 55665443222 111 2 34454 443 7899999999999999998887 344
Q ss_pred ccCCCCCCCCccCCCC--CCCCCCcccCCCCCCCCCCCCCCCCCCC-CCCcccCCChHHHHHHHHHHHHHHhhcCCceEE
Q 003698 503 AHYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSGDNFH-AAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 579 (802)
Q Consensus 503 ~~~~~~~g~~~~f~g~--~~w~~~~~~~~~~~f~~~~~~~~~~~~~-~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfR 579 (802)
.++. .+..|... .++. +. +..+....+..+. ...-+|+.||++++...+.++..++.+|||||-
T Consensus 109 ~~~~----~~~~~~~~~~~~~~---v~------~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w 175 (441)
T PF01055_consen 109 NDSP----DYENYDEAKEKGYL---VK------NPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWW 175 (441)
T ss_dssp TTTT----B-HHHHHHHHTT-B---EB------CTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEE
T ss_pred CCCC----cchhhhhHhhcCce---ee------cccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEE
Confidence 3332 11111000 0000 00 0001000000010 134488999999999999999999777999999
Q ss_pred ecccccc
Q 003698 580 LDFVRGF 586 (802)
Q Consensus 580 lD~a~~~ 586 (802)
+|.....
T Consensus 176 ~D~~E~~ 182 (441)
T PF01055_consen 176 LDFGEPS 182 (441)
T ss_dssp EESTTTB
T ss_pred eecCCcc
Confidence 9995433
No 71
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=92.48 E-value=0.18 Score=44.69 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=24.0
Q ss_pred EeecCceeeeEEEEEcCcccccccCCCceeEeC
Q 003698 267 FTVDEEFAGFLFVLKLNENTWLKCMENDFYIPL 299 (802)
Q Consensus 267 ~~~~~~~~~~~Fvl~~~~~~W~k~~g~df~v~~ 299 (802)
|++...-..|.||++++.++|=+|+|.||.++.
T Consensus 54 v~vP~~a~~~dfvF~dg~~~wDNN~g~nY~~~V 86 (87)
T PF03423_consen 54 VDVPEDAYVMDFVFNDGAGNWDNNNGANYHFPV 86 (87)
T ss_dssp EE--TTTSEEEEEEE-SSS-EESTTTS-EEEES
T ss_pred EEEcCCceEEEEEEcCCCCcEeCCCCccEEEEc
Confidence 777445557999999998999999999999985
No 72
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=92.46 E-value=0.43 Score=53.18 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHhcCC--CEEEeCCCCCCCCCCCCCCccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 003698 427 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 503 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGv--taI~L~PI~es~s~hGYd~~Dy~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~ 503 (802)
+-+.+.+.++.+++.|| ++|||-+-+.. +|. + +..|+ +|- +.++|++++|++|++|++=+.+ |+..
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~--~-f~~d~~~fP---dp~~m~~~l~~~g~~~~~~~~P-~v~~ 90 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD----GYR--V-FTWDKERFP---DPKELIKELHEQGFKVVTIIDP-GVKV 90 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC----CCC--c-eeeccccCC---CHHHHHHHHHHCCCEEEEEEeC-ceeC
Confidence 46678888999998886 67887543322 222 1 34554 665 4589999999999999976544 3322
Q ss_pred cCCCCCCCCccCCCC--CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEec
Q 003698 504 HYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 581 (802)
Q Consensus 504 ~~~~~~g~~~~f~g~--~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD 581 (802)
+.. +..|... ..+.- ...+...+.+ ..|.+ ..--+|+.||+.++...+.++..+ +.|||||-+|
T Consensus 91 ~~~-----~~~~~e~~~~g~~v--~~~~g~~~~~----~~w~g--~~~~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~D 156 (339)
T cd06604 91 DPG-----YDVYEEGLENDYFV--KDPDGELYIG----RVWPG--LSAFPDFTNPKVREWWGSLYKKFV-DLGVDGIWND 156 (339)
T ss_pred CCC-----ChHHHHHHHCCeEE--ECCCCCEEEE----EecCC--CccccCCCChHHHHHHHHHHHHHh-hCCCceEeec
Confidence 110 1111000 00000 0000000000 01111 112379999999999999999888 8999999999
Q ss_pred ccc
Q 003698 582 FVR 584 (802)
Q Consensus 582 ~a~ 584 (802)
...
T Consensus 157 ~~E 159 (339)
T cd06604 157 MNE 159 (339)
T ss_pred CCC
Confidence 864
No 73
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=92.43 E-value=0.55 Score=41.69 Aligned_cols=38 Identities=21% Similarity=0.615 Sum_probs=26.9
Q ss_pred eeEEEEecCCCCCceeeEEEEEeCCccchhccCCCceeeec
Q 003698 75 FDQVNIDFDTRSDIAAINFVLKDEETGAWYQHRGRDFKVPL 115 (802)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~fvl~~~~~~~w~~~~g~~f~v~l 115 (802)
..+.+|+++.+ ...|+||++|+ .+.|=+|+|.||++++
T Consensus 49 ~~~~tv~vP~~--a~~~dfvF~dg-~~~wDNN~g~nY~~~V 86 (87)
T PF03423_consen 49 WWKATVDVPED--AYVMDFVFNDG-AGNWDNNNGANYHFPV 86 (87)
T ss_dssp EEEEEEE--TT--TSEEEEEEE-S-SS-EESTTTS-EEEES
T ss_pred EEEEEEEEcCC--ceEEEEEEcCC-CCcEeCCCCccEEEEc
Confidence 56777887623 44799999998 7899999999999975
No 74
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=92.38 E-value=0.24 Score=64.87 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=44.7
Q ss_pred CCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEeccccccc--chhHHHHH
Q 003698 542 GDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW--GGYVKDYL 595 (802)
Q Consensus 542 ~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~--~~f~~~~~ 595 (802)
+.+..+|.-+..++|+|-+..-..+..|+++=-|||.|+|.++.+- ..+++++.
T Consensus 1035 FFdIn~L~~lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL~dP~~Yl~rLr 1090 (1693)
T PRK14507 1035 FFDINSLAALRMERPDVFEATHALLFRLIAEGRIDGLRIDHPDGLADPAGYFRRLQ 1090 (1693)
T ss_pred eecchhheeeeccCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccccCHHHHHHHHH
Confidence 3345778888889999999999999999988889999999999874 45777654
No 75
>PRK10426 alpha-glucosidase; Provisional
Probab=92.32 E-value=0.83 Score=55.17 Aligned_cols=133 Identities=18% Similarity=0.233 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcC--CCEEEeCCCCCCCCCCCCCCccC-------CccCC-CCCCHHHHHHHHHHHHHcCCEEEEEec
Q 003698 428 YMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDL-------YNLSS-RYGNIDELKDVVNKFHDVGMKILGDVV 497 (802)
Q Consensus 428 l~GI~~kLdYLk~LG--vtaI~L~PI~es~s~hGYd~~Dy-------~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD~V 497 (802)
-+.+.+.++.+++.| +++|||- -. +++...+| +..|+ +|- +.++||+++|++|+||++=+-
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~ld-dw-----~~~~~~~~g~~~~~~~~~d~~~FP---dp~~mi~~L~~~G~k~v~~i~ 290 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQ-DW-----SGIRMTSFGKRLMWNWKWDSERYP---QLDSRIKQLNEEGIQFLGYIN 290 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEe-cc-----cccccccccccccccceEChhhCC---CHHHHHHHHHHCCCEEEEEEc
Confidence 456888888999988 5889984 11 12211111 13332 343 578899999999999999865
Q ss_pred cCcccccCCCCCCCCccCCCC--CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCC
Q 003698 498 LNHRCAHYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGY 575 (802)
Q Consensus 498 ~NHt~~~~~~~~g~~~~f~g~--~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GI 575 (802)
+- +..+++ .|... ..+.- ...+...|.. ..|.+ ...-+|+.||++|+...+.++..+.+.||
T Consensus 291 P~-v~~~~~-------~y~e~~~~gy~v--k~~~g~~~~~----~~~~~--~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gv 354 (635)
T PRK10426 291 PY-LASDGD-------LCEEAAEKGYLA--KDADGGDYLV----EFGEF--YAGVVDLTNPEAYEWFKEVIKKNMIGLGC 354 (635)
T ss_pred Cc-cCCCCH-------HHHHHHHCCcEE--ECCCCCEEEe----EecCC--CceeecCCCHHHHHHHHHHHHHHHhhcCC
Confidence 53 222221 11000 00000 0000000000 01111 12248899999999999988755558999
Q ss_pred ceEEeccccc
Q 003698 576 DGWRLDFVRG 585 (802)
Q Consensus 576 DGfRlD~a~~ 585 (802)
|||-.|+...
T Consensus 355 dg~w~D~~E~ 364 (635)
T PRK10426 355 SGWMADFGEY 364 (635)
T ss_pred CEEeeeCCCC
Confidence 9999997643
No 76
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=92.32 E-value=0.22 Score=54.91 Aligned_cols=135 Identities=19% Similarity=0.176 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHhcCC--CEEEeCCCCCCCCCCCCCCccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 003698 426 RWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 502 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGv--taI~L~PI~es~s~hGYd~~Dy~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~ 502 (802)
.+-+.+.+.++.+++.|| ++|||-.=+. .+|. .+..|+ +|- +.++||+++|++|+||++=+.+- ++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~----~~~~---~f~~d~~~FP---dp~~~i~~l~~~g~k~~~~~~P~-i~ 89 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFPYDVVFLDIHYM----DSYR---LFTWDPYRFP---EPKKLIDELHKRNVKLVTIVDPG-IR 89 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEEChhhh----CCCC---ceeechhcCC---CHHHHHHHHHHCCCEEEEEeecc-cc
Confidence 457778888888888775 6777753111 1221 134444 554 56799999999999999965443 33
Q ss_pred ccCCCCCCCCccCC-CC-CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEe
Q 003698 503 AHYQNQNGVWNIFG-GR-LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 580 (802)
Q Consensus 503 ~~~~~~~g~~~~f~-g~-~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRl 580 (802)
.+.. +..|. +. ..+.- ...+...+.+ ..|.+ ...-+|+.||+.++...+.++..+.+.|||||-+
T Consensus 90 ~~~~-----~~~~~~~~~~~~~v--~~~~g~~~~~----~~w~G--~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~ 156 (317)
T cd06600 90 VDQN-----YSPFLSGMDKGKFC--EIESGELFVG----KMWPG--TTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWL 156 (317)
T ss_pred CCCC-----ChHHHHHHHCCEEE--ECCCCCeEEE----eecCC--CccccCCCChHHHHHHHHHHHHHhhcCCCceEEe
Confidence 2211 11110 00 00000 0000000100 00111 1124799999999999999988887899999999
Q ss_pred cccc
Q 003698 581 DFVR 584 (802)
Q Consensus 581 D~a~ 584 (802)
|...
T Consensus 157 D~~E 160 (317)
T cd06600 157 DMNE 160 (317)
T ss_pred eCCC
Confidence 9865
No 77
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=91.18 E-value=1.5 Score=52.94 Aligned_cols=128 Identities=11% Similarity=0.084 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCC----CCCccCCccCCCCCCHHHHHH-HHHHHHHcCCEEEEEeccCccc
Q 003698 428 YMELKEKATELSSLGFSVIWLPPPTESVSPEG----YMPRDLYNLSSRYGNIDELKD-VVNKFHDVGMKILGDVVLNHRC 502 (802)
Q Consensus 428 l~GI~~kLdYLk~LGvtaI~L~PI~es~s~hG----Yd~~Dy~~IDp~~Gt~edfk~-LV~~aH~~GIkVILD~V~NHt~ 502 (802)
-+.+...|+.|+++|+|+|||--+.+..++.- |-|.++.-+ -.+-|-. .-+-+|++|++|..=+-+=-.+
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~-----r~d~f~~~aw~l~~r~~v~v~AWmp~~~~~ 407 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPM-----RADLFNRVAWQLRTRAGVNVYAWMPVLSFD 407 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCcccccc-----ccCCcCHHHHHHHHhhCCEEEEeccceeec
Confidence 56788999999999999999988766554333 333332222 1122222 1222899999997544332111
Q ss_pred ccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEec
Q 003698 503 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 581 (802)
Q Consensus 503 ~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD 581 (802)
-... ...- ..+.... .....+ .. | ...|+-.+|+||+.|.++..-..+.+.|||.-||
T Consensus 408 ~~~~--~~~~------~~~~~~~---~~~~~~-~~----~-----~~rl~P~~pe~r~~i~~i~~dla~~~~~dGilf~ 465 (671)
T PRK14582 408 LDPT--LPRV------KRLDTGE---GKAQIH-PE----Q-----YRRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFH 465 (671)
T ss_pred cCCC--cchh------hhccccC---CccccC-CC----C-----CcCCCCCCHHHHHHHHHHHHHHHHhCCCceEEec
Confidence 1000 0000 0000000 000000 00 0 1228889999999999999999988999999995
No 78
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=90.65 E-value=0.83 Score=50.63 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 502 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~ 502 (802)
.+.++.||+.|+|+|=|=- +..+.. .-+-+.+...+|.++|++.||+|+||+=+.++-
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv~P~~------------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~W 84 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WVNPYD------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFW 84 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--SS-TT------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS-
T ss_pred CCHHHHHHhcCCCeEEEEe-ccCCcc------------cccCCHHHHHHHHHHHHHCCCeEEEeecccCCC
Confidence 5788999999999987632 111111 445567899999999999999999999776543
No 79
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=90.61 E-value=0.97 Score=45.12 Aligned_cols=69 Identities=16% Similarity=0.270 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCC--CCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 003698 428 YMELKEKATELSSLGFSVIWLPPPTESVSPEG--YMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 500 (802)
Q Consensus 428 l~GI~~kLdYLk~LGvtaI~L~PI~es~s~hG--Yd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NH 500 (802)
-+.-.+.+.+++++||++|.|. -.++++ +-+..++.-.-..+..+-+..+.++|.+.||+|++-+-++.
T Consensus 19 ~~~W~~~~~~m~~~GidtlIlq----~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 19 PAQWREEFRAMKAIGIDTLILQ----WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDP 89 (166)
T ss_pred HHHHHHHHHHHHHcCCcEEEEE----EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCc
Confidence 4567889999999999999987 222222 23444421112235677899999999999999999988874
No 80
>PRK10658 putative alpha-glucosidase; Provisional
Probab=90.47 E-value=0.55 Score=56.92 Aligned_cols=130 Identities=12% Similarity=0.101 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcCC--CEEEeCCCCCCCCCCCCCCccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCccccc
Q 003698 428 YMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 504 (802)
Q Consensus 428 l~GI~~kLdYLk~LGv--taI~L~PI~es~s~hGYd~~Dy~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~ 504 (802)
=+.+.+.++-+++.|| ++|+|-..+- .+|.-.| +..|+ +|- +.+.||+++|++|+||++=+.+ +.+.+
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~lD~~w~----~~~~~~~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~i~P-~i~~~ 352 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFHFDCFWM----KEFQWCD-FEWDPRTFP---DPEGMLKRLKAKGLKICVWINP-YIAQK 352 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEchhhh----cCCceee-eEEChhhCC---CHHHHHHHHHHCCCEEEEeccC-CcCCC
Confidence 3456777777887776 4566643221 1222223 34443 444 4568999999999999987654 33333
Q ss_pred CCC-----CCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC-CCCCcccCCChHHHHHHHHHHHHHHhhcCCceE
Q 003698 505 YQN-----QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNF-HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 578 (802)
Q Consensus 505 ~~~-----~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~-~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGf 578 (802)
++. .+|-+.. ...+..+.+..| ....-+|+.||++|+...+.++.++ +.|||||
T Consensus 353 s~~f~e~~~~gy~vk-------------------~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~-d~Gvdgf 412 (665)
T PRK10658 353 SPLFKEGKEKGYLLK-------------------RPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLL-DMGVDCF 412 (665)
T ss_pred chHHHHHHHCCeEEE-------------------CCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHH-hcCCcEE
Confidence 221 0110000 001111111111 1233489999999999999999988 7999999
Q ss_pred Eecccccc
Q 003698 579 RLDFVRGF 586 (802)
Q Consensus 579 RlD~a~~~ 586 (802)
-.|....+
T Consensus 413 w~D~gE~~ 420 (665)
T PRK10658 413 KTDFGERI 420 (665)
T ss_pred EecCCcee
Confidence 99976433
No 81
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=89.03 E-value=1.4 Score=46.88 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccC
Q 003698 474 NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 553 (802)
Q Consensus 474 t~edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~ 553 (802)
+.+++++.++.+|++|+||++=+--+|.+... ...
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~---------------------------------------------~~~ 83 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF---------------------------------------------ANN 83 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc---------------------------------------------ccc
Confidence 46889999999999999999988665543210 001
Q ss_pred CChHHHHHHHHHHHHHHhhcCCceEEeccc
Q 003698 554 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFV 583 (802)
Q Consensus 554 ~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a 583 (802)
.+++-++.+.+.+..+++.+|.||+=+|--
T Consensus 84 ~~~~~~~~fa~~l~~~v~~yglDGiDiD~E 113 (255)
T cd06542 84 LSDAAAKAYAKAIVDTVDKYGLDGVDFDDE 113 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEeee
Confidence 234446666777777777999999999964
No 82
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=88.95 E-value=1 Score=49.76 Aligned_cols=133 Identities=11% Similarity=0.033 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHhcCC--CEEEeCCCCCCC-C-CCCCCCccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCcc
Q 003698 427 WYMELKEKATELSSLGF--SVIWLPPPTESV-S-PEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHR 501 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGv--taI~L~PI~es~-s-~hGYd~~Dy~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt 501 (802)
+-+.+.+.++.+++.|| ++|+|-.=+-.. . ...|. | +..|+ +|-. .++||+++|++|+||++=+.+ ++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FPd---p~~mi~~L~~~G~k~~~~v~P-~v 94 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFPD---PAGMIADLAKKGVKTIVITEP-FV 94 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCCC---HHHHHHHHHHcCCcEEEEEcC-cc
Confidence 45678888888888775 677775422110 0 00111 2 34443 6654 578999999999999998753 23
Q ss_pred cccCCC-----CCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCc
Q 003698 502 CAHYQN-----QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYD 576 (802)
Q Consensus 502 ~~~~~~-----~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GID 576 (802)
..+++. .+|-+ + .. ......+. ...|.+ ..--+|+.||+.++...+.++.++ +.|||
T Consensus 95 ~~~~~~y~e~~~~g~l--~------~~---~~~~~~~~----~~~w~g--~~~~~Dftnp~a~~w~~~~~~~~~-~~Gvd 156 (317)
T cd06598 95 LKNSKNWGEAVKAGAL--L------KK---DQGGVPTL----FDFWFG--NTGLIDWFDPAAQAWFHDNYKKLI-DQGVT 156 (317)
T ss_pred cCCchhHHHHHhCCCE--E------EE---CCCCCEee----eeccCC--CccccCCCCHHHHHHHHHHHHHhh-hCCcc
Confidence 333321 01100 0 00 00000000 001111 122477899999999999988876 89999
Q ss_pred eEEecccc
Q 003698 577 GWRLDFVR 584 (802)
Q Consensus 577 GfRlD~a~ 584 (802)
||-+|...
T Consensus 157 g~w~D~~E 164 (317)
T cd06598 157 GWWGDLGE 164 (317)
T ss_pred EEEecCCC
Confidence 99999864
No 83
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=88.88 E-value=0.67 Score=50.56 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 499 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~N 499 (802)
......++-|+-..+.|++-|..+=.......+ +-..-|++|++.||+.||+||+|+-+.
T Consensus 13 ~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~--------------~~~~~~~ell~~Anklg~~vivDvnPs 72 (360)
T COG3589 13 SPKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAE--------------LYFHRFKELLKEANKLGLRVIVDVNPS 72 (360)
T ss_pred CcchhHHHHHHHHHHcCccceeeecccCCchHH--------------HHHHHHHHHHHHHHhcCcEEEEEcCHH
Confidence 445567788888899999999765433222211 123459999999999999999998664
No 84
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=88.74 E-value=2.3 Score=50.02 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccC
Q 003698 476 DELKDVVNKFHDVGMKILGDVVLN 499 (802)
Q Consensus 476 edfk~LV~~aH~~GIkVILD~V~N 499 (802)
++++++-+.|+++||+||.|+-+-
T Consensus 192 ~Q~~~~~~~A~~~gI~L~gDlpig 215 (496)
T PF02446_consen 192 KQWKAAKEYAREMGIGLIGDLPIG 215 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESS
T ss_pred HHHHHHHHHHHHCCCEEEEeccce
Confidence 478999999999999999999874
No 85
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=88.44 E-value=1.1 Score=50.20 Aligned_cols=58 Identities=17% Similarity=0.302 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 003698 427 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLN 499 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD~V~N 499 (802)
++....+-|.-.+++|++.|+.+=. .++. .=...+.|++|++.||++||+||+|+-..
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~---------------ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLH---------------IPEDDPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE------------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCC---------------cCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 6788888899999999999986421 1111 11125789999999999999999999665
No 86
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=88.37 E-value=2.3 Score=50.06 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccC
Q 003698 476 DELKDVVNKFHDVGMKILGDVVLN 499 (802)
Q Consensus 476 edfk~LV~~aH~~GIkVILD~V~N 499 (802)
+++++|-+.|+.+||+||.|+-+-
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~ 235 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVF 235 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcce
Confidence 468888899999999999999874
No 87
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=87.81 E-value=6 Score=44.27 Aligned_cols=126 Identities=10% Similarity=0.037 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccC-------CCCCCHHHHHHHHHHHHHcCCEEEEEe-cc
Q 003698 427 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-------SRYGNIDELKDVVNKFHDVGMKILGDV-VL 498 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~ID-------p~~Gt~edfk~LV~~aH~~GIkVILD~-V~ 498 (802)
...-|...+|.++.+.+|.++|-= .+. ..+++....|=.+- ..|=|.+|+++||+-|.++||.||-.+ ++
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~Hl-tDd-~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~P 93 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHI-TDS-QSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDTP 93 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeE-EcC-CCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccCc
Confidence 377888889999999999998720 000 01122211111111 011289999999999999999999998 67
Q ss_pred CcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcC
Q 003698 499 NHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIG 574 (802)
Q Consensus 499 NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~G 574 (802)
.|+..-.... +.........+. .+..-...-.||..+|++.+++.+++...++-|.
T Consensus 94 GH~~a~~~~~--------------p~l~~~~~~~~~------~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~ 149 (348)
T cd06562 94 GHTGSWGQGY--------------PELLTGCYAVWR------KYCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFP 149 (348)
T ss_pred hhhHHHHHhC--------------hhhhCCCCcccc------ccccCCCCccccCCChhHHHHHHHHHHHHHHhcC
Confidence 7775422100 000000000000 0000011224889999999999999988886444
No 88
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=87.59 E-value=13 Score=45.67 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=48.4
Q ss_pred CCCCCcccCC-----ChHHHHHHHHHHHHHHhhcCCceEEecccccccchhHH---HHHHhcCCc-EEEEeecCCCccc
Q 003698 545 FHAAPNIDHS-----QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVK---DYLEATEPY-FAVGEYWDSLSYT 614 (802)
Q Consensus 545 ~~~lpdln~~-----np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~~---~~~~~~~p~-~liGE~w~~~~~l 614 (802)
|.+..+|+|. +|.+|++|.+.+..=. .=.||+|+|.++..|-..-. +..++.+|+ |+++|.+....++
T Consensus 495 WGDsVKLryG~kpeDsPyLWq~M~kY~e~tA--riFdG~RlDNcHsTPlHVaEylLd~ARk~nPnlYVvAELFtgSe~~ 571 (1521)
T KOG3625|consen 495 WGDSVKLRYGNKPEDSPYLWQHMKKYTEITA--RIFDGVRLDNCHSTPLHVAEYLLDAARKLNPNLYVVAELFTGSEDL 571 (1521)
T ss_pred ecceeeeccCCCcccChHHHHHHHHHHHHHH--HHhcceeeccCCCCchhHHHHHHHHHHhcCCCeEEEeeeccCCccc
Confidence 3456677774 5789999988776544 35799999999977654322 334567898 8999999875433
No 89
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=87.48 E-value=0.54 Score=55.98 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=51.1
Q ss_pred HHHHHHHHhCCCeeeEeCCchh-----------------------------HH----------HHHHHHHHHHHHHhCcc
Q 003698 705 MQGYAYILTHPGTPSVFYDHIF-----------------------------SH----------YRQEIEALLSVRKRNKI 745 (802)
Q Consensus 705 klA~allltlpGiP~IYyGdE~-----------------------------~W----------l~~~~~~Li~lRk~~~a 745 (802)
..+..+-||.||||=||+|.|. +| =...+.+++.+|+.++.
T Consensus 709 L~q~LlkltaPGVPD~YQGtE~wd~SLVDPDNRRpVDf~~~~~~L~~lq~~~~~l~~~~~Dg~K~~v~~~aL~lR~~~~e 788 (889)
T COG3280 709 LAQTLLKLTAPGVPDIYQGTELWDFSLVDPDNRRPVDFATRAQALKALQEGDFELLEHWLDGIKQAVTAAALRLRREHPE 788 (889)
T ss_pred HHHHHHHHcCCCCCccccchhhhhccccCCCCCCCCcHHHHHHHHhcCCCCchhHHHHhhhhHHHHHHHHHHHHHHhchH
Confidence 4455567999999999999984 11 12256789999999996
Q ss_pred -ccCCCeeEEeeCC----CEEEEEE--CC-EEEEEEeC
Q 003698 746 -HCRSRVEIVKAER----DVYAAII--DE-KVAMKLGP 775 (802)
Q Consensus 746 -l~~G~~~~l~~~~----~v~a~~r--~~-~~lvvinn 775 (802)
+..|++..+...+ -+++|.| ++ .+++++..
T Consensus 789 lF~~GdY~Pl~~~G~~a~hviAFaR~~~~~~~i~v~Pr 826 (889)
T COG3280 789 LFAGGDYLPLFAAGPAADHVIAFARGKDDQFAITVAPR 826 (889)
T ss_pred hhcCCCeeeecccCchhHHHHHHhhccCCceeEEeehH
Confidence 7899999998654 4677877 33 44444444
No 90
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=86.58 E-value=3.7 Score=44.98 Aligned_cols=122 Identities=9% Similarity=0.094 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccC-----------CCCCCHHHHHHHHHHHHHcCCEEEEE
Q 003698 427 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-----------SRYGNIDELKDVVNKFHDVGMKILGD 495 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~ID-----------p~~Gt~edfk~LV~~aH~~GIkVILD 495 (802)
...-|.+-+|.+..+++|.++|-=- +. ..+++....|=.+- ..+=|.+|+++||+-|.++||.||-.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~-D~-~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLT-DD-QAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeee-cC-CCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEe
Confidence 4778888899999999999977311 00 01111111111110 11237899999999999999999999
Q ss_pred e-ccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhc
Q 003698 496 V-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEI 573 (802)
Q Consensus 496 ~-V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~ 573 (802)
+ ++.|+..--.. .+.....+ +.+.. . ......||..+|++.+++.+++..+++-|
T Consensus 92 iD~PGH~~a~~~~--------------~p~l~~~~---~~~~~----~--~~~~~~l~~~~~~t~~fl~~l~~e~~~lf 147 (303)
T cd02742 92 IDMPGHSTAFVKS--------------FPKLLTEC---YAGLK----L--RDVFDPLDPTLPKGYDFLDDLFGEIAELF 147 (303)
T ss_pred ccchHHHHHHHHh--------------CHHhccCc---cccCC----C--CCCCCccCCCCccHHHHHHHHHHHHHHhC
Confidence 8 67787642110 00000000 00000 0 00112488899999999999999888544
No 91
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=85.80 E-value=1.3 Score=48.24 Aligned_cols=129 Identities=11% Similarity=0.112 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHhcCC--CEEEeCCCCCCC-C----CCCCCCccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEEEec
Q 003698 426 RWYMELKEKATELSSLGF--SVIWLPPPTESV-S----PEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVV 497 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGv--taI~L~PI~es~-s----~hGYd~~Dy~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD~V 497 (802)
.+-+.+.+-++.+++.|| ++|||=.=+... . ..+|. -+..|+ +|. +.++||+++|++|+|||+-+.
T Consensus 22 ~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~---~ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v~ 95 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWT---GYSWNRKLFP---DPEKLLQDLHDRGLKVTLNLH 95 (292)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcc---eeEEChhcCC---CHHHHHHHHHHCCCEEEEEeC
Confidence 356778888888887665 667762211110 0 01111 245554 564 568999999999999999887
Q ss_pred cCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCce
Q 003698 498 LNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDG 577 (802)
Q Consensus 498 ~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDG 577 (802)
+.. +.+.. ...|..+.. .. ... ... ....-+|+.||+.++...+.+..-+.++||||
T Consensus 96 P~~-~~~~~--~~~y~~~~~---------~~---~~~----~~~----~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg 152 (292)
T cd06595 96 PAD-GIRAH--EDQYPEMAK---------AL---GVD----PAT----EGPILFDLTNPKFMDAYFDNVHRPLEKQGVDF 152 (292)
T ss_pred CCc-ccCCC--cHHHHHHHH---------hc---CCC----ccc----CCeEEecCCCHHHHHHHHHHHHHHHHhcCCcE
Confidence 642 11110 000110100 00 000 000 01124689999988876665544444899999
Q ss_pred EEeccc
Q 003698 578 WRLDFV 583 (802)
Q Consensus 578 fRlD~a 583 (802)
|=.|..
T Consensus 153 ~W~D~~ 158 (292)
T cd06595 153 WWLDWQ 158 (292)
T ss_pred EEecCC
Confidence 999964
No 92
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=85.20 E-value=11 Score=41.69 Aligned_cols=123 Identities=13% Similarity=0.185 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCcc-----CCCCCCHHHHHHHHHHHHHcCCEEEEEe-ccCc
Q 003698 427 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNL-----SSRYGNIDELKDVVNKFHDVGMKILGDV-VLNH 500 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~I-----Dp~~Gt~edfk~LV~~aH~~GIkVILD~-V~NH 500 (802)
...-|.+.||.++.+++|.++|-=. +.. .+++....|=.+ ...+=|.+|+++||+-|.++||.||-.+ ++-|
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~Hlt-Dd~-~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH 93 (311)
T cd06570 16 PVAVIKRQLDAMASVKLNVFHWHLT-DDQ-GFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGH 93 (311)
T ss_pred CHHHHHHHHHHHHHhCCeEEEEEEe-cCC-CceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccc
Confidence 4778889999999999998877310 000 011111111111 0112388999999999999999999988 6777
Q ss_pred ccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHh
Q 003698 501 RCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN 571 (802)
Q Consensus 501 t~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~ 571 (802)
+..-.. .|..+. ..... +. ....+.. .-+.||..+|++.+++.+++..+++
T Consensus 94 ~~a~~~----~ypel~----------~~~~~-~~----~~~~~~~-~~~~l~~~~p~t~~f~~~l~~E~~~ 144 (311)
T cd06570 94 ASAIAV----AYPELA----------SGPGP-YV----IERGWGV-FEPLLDPTNEETYTFLDNLFGEMAE 144 (311)
T ss_pred hHHHHH----hCHHhc----------cCCCc-cc----ccccccc-CCCccCCCChhHHHHHHHHHHHHHH
Confidence 764211 000000 00000 00 0000000 1235899999999999999988874
No 93
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=84.99 E-value=2.3 Score=51.85 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCC--EEEEEeccC
Q 003698 476 DELKDVVNKFHDVGM--KILGDVVLN 499 (802)
Q Consensus 476 edfk~LV~~aH~~GI--kVILD~V~N 499 (802)
++++++-+.|+++|| +||.|+-+-
T Consensus 355 ~Ql~~~~~~A~~~Gm~igL~gDLpvg 380 (695)
T PRK11052 355 SQFAACWQLSQQLGMPIGLYRDLAVG 380 (695)
T ss_pred HHHHHHHHHHHHCCCceeEEEeeece
Confidence 478888999999999 679999873
No 94
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=83.98 E-value=2.7 Score=46.74 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHhcCC--CEEEeCCCCCCCCCCCCCCccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 003698 426 RWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 502 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGv--taI~L~PI~es~s~hGYd~~Dy~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~ 502 (802)
.+-..+.+.++.+++.+| ++|||=.=+. .+| . .+..|+ +|-.+ ++|++++|++|++||+-+.+- ..
T Consensus 21 ~~~~ev~~v~~~~r~~~IP~D~i~lDidy~----~~~--~-~Ft~d~~~FPdp---~~mv~~L~~~G~klv~~i~P~-i~ 89 (332)
T cd06601 21 SNRSDLEEVVEGYRDNNIPLDGLHVDVDFQ----DNY--R-TFTTNGGGFPNP---KEMFDNLHNKGLKCSTNITPV-IS 89 (332)
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEEcCchh----cCC--C-ceeecCCCCCCH---HHHHHHHHHCCCeEEEEecCc-ee
Confidence 356678888888877665 6787754222 122 1 245554 66554 789999999999999876542 11
Q ss_pred ccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEecc
Q 003698 503 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 582 (802)
Q Consensus 503 ~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~ 582 (802)
.|. .|.. . ... .|+.||++|++-.+..+.+. +.|||||=+|+
T Consensus 90 ------~g~--------~~~~------------~---------~~~--pDftnp~ar~wW~~~~~~l~-~~Gv~~~W~Dm 131 (332)
T cd06601 90 ------YGG--------GLGS------------P---------GLY--PDLGRPDVREWWGNQYKYLF-DIGLEFVWQDM 131 (332)
T ss_pred ------cCc--------cCCC------------C---------cee--eCCCCHHHHHHHHHHHHHHH-hCCCceeecCC
Confidence 000 0100 0 012 46789999999888888887 78999999997
Q ss_pred cc
Q 003698 583 VR 584 (802)
Q Consensus 583 a~ 584 (802)
..
T Consensus 132 nE 133 (332)
T cd06601 132 TT 133 (332)
T ss_pred CC
Confidence 63
No 95
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=83.94 E-value=2.2 Score=48.02 Aligned_cols=32 Identities=19% Similarity=0.066 Sum_probs=26.4
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCceEEecccc
Q 003698 553 HSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 584 (802)
Q Consensus 553 ~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~ 584 (802)
..++..|+.+++.+..+++++|.||+-||--.
T Consensus 91 l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~ 122 (358)
T cd02875 91 ISNPTYRTQWIQQKVELAKSQFMDGINIDIEQ 122 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeEEEcccC
Confidence 34688899888888778889999999999753
No 96
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=83.71 E-value=2.3 Score=52.43 Aligned_cols=86 Identities=16% Similarity=0.158 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCEEEEEeccCcccccCCC-----CCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCC-CCCcc
Q 003698 478 LKDVVNKFHDVGMKILGDVVLNHRCAHYQN-----QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-AAPNI 551 (802)
Q Consensus 478 fk~LV~~aH~~GIkVILD~V~NHt~~~~~~-----~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~-~lpdl 551 (802)
.++|++.+|++|||+|.=+.+. ...+++. .+|-... ...+....+..+. ...-+
T Consensus 323 pk~mi~~l~~~Gikl~~~i~P~-i~~d~~~~~e~~~~Gy~~k-------------------~~~g~~~~~~~w~~~~a~~ 382 (772)
T COG1501 323 PKQMIAELHEKGIKLIVIINPY-IKQDSPLFKEAIEKGYFVK-------------------DPDGEIYQADFWPGNSAFP 382 (772)
T ss_pred HHHHHHHHHhcCceEEEEeccc-cccCCchHHHHHHCCeEEE-------------------CCCCCEeeecccCCccccc
Confidence 3499999999999999877664 2333321 0110000 0111212222222 34458
Q ss_pred cCCChHHHHHHHH-HHHHHHhhcCCceEEecccc
Q 003698 552 DHSQDFVRKDIKE-WLCWLRNEIGYDGWRLDFVR 584 (802)
Q Consensus 552 n~~np~Vr~~i~~-~l~~Wi~e~GIDGfRlD~a~ 584 (802)
|+.||++|+...+ ....++ ++|||||=.|+..
T Consensus 383 DFtnp~~r~Ww~~~~~~~l~-d~Gv~g~W~D~nE 415 (772)
T COG1501 383 DFTNPDAREWWASDKKKNLL-DLGVDGFWNDMNE 415 (772)
T ss_pred CCCCHHHHHHHHHHHHhHHH-hcCccEEEccCCC
Confidence 8999999999995 556677 9999999999874
No 97
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=83.20 E-value=2.3 Score=53.34 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHhcCC--CEEEeCCCCCCCCCCCCCCccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 003698 427 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 503 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGv--taI~L~PI~es~s~hGYd~~Dy~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~ 503 (802)
+-+.+.+.++.+++.|| ++|||--=+ ..||.. |..|+ +|- +.++|++++|++|+|+|.=+-+ ++..
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwlDidY----m~g~~~---FTwD~~rFP---dP~~mv~~Lh~~G~kvv~iidP-gI~~ 267 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWMDIDY----MDGFRC---FTFDKERFP---DPKGLADDLHSIGFKAIWMLDP-GIKA 267 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEehhh----hcCCCc---eeECcccCC---CHHHHHHHHHHCCCEEEEEEcC-CCcc
Confidence 46678888888888775 668774211 123332 45554 665 4589999999999999774432 2211
Q ss_pred cCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCC-CCcccCCChHHHHHHHHHHHHHHhhcCCceEEecc
Q 003698 504 HYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHA-APNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 582 (802)
Q Consensus 504 ~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~-lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~ 582 (802)
+..|..|+....-.-+....+...|. +..|++ ..-.|+.||++|+...+.++.++ +.|||||=+|+
T Consensus 268 -----d~gY~~y~eg~~~~~fvk~~~G~~y~-------G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~-d~GVDG~W~Dm 334 (978)
T PLN02763 268 -----EEGYFVYDSGCENDVWIQTADGKPFV-------GEVWPGPCVFPDFTNKKTRSWWANLVKDFV-SNGVDGIWNDM 334 (978)
T ss_pred -----CCCCHHHHhHhhcCeeEECCCCCeeE-------eeecCCCccccCCCCHHHHHHHHHHHHHHh-cCCCcEEEccC
Confidence 11122221100000000000001111 111111 11258999999999999998888 79999999998
Q ss_pred c
Q 003698 583 V 583 (802)
Q Consensus 583 a 583 (802)
-
T Consensus 335 n 335 (978)
T PLN02763 335 N 335 (978)
T ss_pred C
Confidence 4
No 98
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=82.64 E-value=2.8 Score=47.31 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCC--HHHHHHHHHHHHHcCCEEEEEeccCcccccCCC
Q 003698 430 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN--IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN 507 (802)
Q Consensus 430 GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt--~edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~ 507 (802)
-+.+-|.-+|++|||+|-|..+.-+ .++|.=|. -+.|.++++.|+++||+|||-.. .++. |
T Consensus 11 ~~~~d~~~m~~~G~n~vri~~~~W~------------~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~-~~~~---P- 73 (374)
T PF02449_consen 11 EWEEDLRLMKEAGFNTVRIGEFSWS------------WLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTP-TAAP---P- 73 (374)
T ss_dssp HHHHHHHHHHHHT-SEEEE-CCEHH------------HH-SBTTB---HHHHHHHHHHHCTT-EEEEEEC-TTTS-----
T ss_pred HHHHHHHHHHHcCCCEEEEEEechh------------hccCCCCeeecHHHHHHHHHHHhccCeEEEEec-cccc---c-
Confidence 5678889999999999999876532 22222222 23588999999999999999665 2221 1
Q ss_pred CCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcC----CceEEeccc
Q 003698 508 QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIG----YDGWRLDFV 583 (802)
Q Consensus 508 ~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~G----IDGfRlD~a 583 (802)
.|-....+ +....+..+.. .....-...+..+|.+|+++.+.++...+.|+ |-||-+|.-
T Consensus 74 ------------~Wl~~~~P-e~~~~~~~g~~---~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE 137 (374)
T PF02449_consen 74 ------------AWLYDKYP-EILPVDADGRR---RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNE 137 (374)
T ss_dssp ------------HHHHCCSG-CCC-B-TTTSB---EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCS
T ss_pred ------------cchhhhcc-cccccCCCCCc---CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccc
Confidence 11000000 00000001100 00112233567899999998887766665555 668888764
No 99
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=82.06 E-value=12 Score=41.36 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeC-------CCCCCC--CCCC-CC------CccCCcc--CCCCCCHHHHHHHHHHHHHc
Q 003698 427 WYMELKEKATELSSLGFSVIWLP-------PPTESV--SPEG-YM------PRDLYNL--SSRYGNIDELKDVVNKFHDV 488 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~-------PI~es~--s~hG-Yd------~~Dy~~I--Dp~~Gt~edfk~LV~~aH~~ 488 (802)
...-|.+.|+.+..+++|.++|- ++-..+ ...| |. +..+... ...+=|.+|+++||+-|.++
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~r 94 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKDR 94 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHHc
Confidence 47788889999999999999981 111100 0000 00 0001111 11222889999999999999
Q ss_pred CCEEEEEe-ccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHH
Q 003698 489 GMKILGDV-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLC 567 (802)
Q Consensus 489 GIkVILD~-V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~ 567 (802)
||.||-.+ ++-|+..--.. .+.... .+. ........||..+|++.+++.+++.
T Consensus 95 gI~vIPEID~PGH~~a~~~~--------------~pel~~--------~~~----~~~~~~~~l~~~~~~t~~f~~~l~~ 148 (326)
T cd06564 95 GVNIIPEIDSPGHSLAFTKA--------------MPELGL--------KNP----FSKYDKDTLDISNPEAVKFVKALFD 148 (326)
T ss_pred CCeEeccCCCcHHHHHHHHh--------------hHHhcC--------CCc----ccCCCcccccCCCHHHHHHHHHHHH
Confidence 99999887 66776532100 000000 000 0011223488999999999999999
Q ss_pred HHHhhcC
Q 003698 568 WLRNEIG 574 (802)
Q Consensus 568 ~Wi~e~G 574 (802)
..++-|.
T Consensus 149 E~~~~f~ 155 (326)
T cd06564 149 EYLDGFN 155 (326)
T ss_pred HHHHhcC
Confidence 8886565
No 100
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=81.99 E-value=2.1 Score=46.78 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 003698 429 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 503 (802)
Q Consensus 429 ~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~ 503 (802)
..-..-+++||+||+|+|-+ |.|||..-..+-++ ++.+.||.||+|+---+++-
T Consensus 53 ~~C~rDi~~l~~LgiNtIRV-----------------Y~vdp~~nHd~CM~----~~~~aGIYvi~Dl~~p~~sI 106 (314)
T PF03198_consen 53 EACKRDIPLLKELGINTIRV-----------------YSVDPSKNHDECMS----AFADAGIYVILDLNTPNGSI 106 (314)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-----------------S---TTS--HHHHH----HHHHTT-EEEEES-BTTBS-
T ss_pred HHHHHhHHHHHHcCCCEEEE-----------------EEeCCCCCHHHHHH----HHHhCCCEEEEecCCCCccc
Confidence 33445578999999999985 78888875555444 44568999999997765543
No 101
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=80.95 E-value=5.4 Score=46.19 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeC--------------C-CCCCCCCCCCCCccCCccCCCCC-------------CHHHH
Q 003698 427 WYMELKEKATELSSLGFSVIWLP--------------P-PTESVSPEGYMPRDLYNLSSRYG-------------NIDEL 478 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~--------------P-I~es~s~hGYd~~Dy~~IDp~~G-------------t~edf 478 (802)
+...|.+.+|.+...++|.++|- | +.+..++.++...+...+-|.+| |.+|+
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~di 99 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRADY 99 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCHHHH
Confidence 47788888999999999988873 2 11122334444433333333332 78999
Q ss_pred HHHHHHHHHcCCEEEEEe-ccCcccc
Q 003698 479 KDVVNKFHDVGMKILGDV-VLNHRCA 503 (802)
Q Consensus 479 k~LV~~aH~~GIkVILD~-V~NHt~~ 503 (802)
++||+-|+++||.||-.+ ++-|+..
T Consensus 100 ~eiv~yA~~rgI~VIPEID~PGH~~a 125 (445)
T cd06569 100 IEILKYAKARHIEVIPEIDMPGHARA 125 (445)
T ss_pred HHHHHHHHHcCCEEEEccCCchhHHH
Confidence 999999999999999988 6778764
No 102
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=80.52 E-value=8.8 Score=41.14 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHhcCC--CEEEeCCCCCCCCCCCCCCccC-CccCC-CCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 003698 426 RWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDL-YNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVL 498 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGv--taI~L~PI~es~s~hGYd~~Dy-~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD~V~ 498 (802)
.+-+.+.+.++.+++.|| ++|+|-.-+.... .++ +..|+ +|.+ .++||+.+|++|++|++-+.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~~------~~f~~~~d~~~Fpd---p~~~i~~l~~~g~~~~~~~~P 88 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTDGY------GDFTFDWDAGKFPN---PKSMIDELHDNGVKLVLWIDP 88 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECcccccCC------ceeeeecChhhCCC---HHHHHHHHHHCCCEEEEEeCh
Confidence 567788899998888554 5888865443321 111 24443 5544 678999999999999996533
No 103
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=80.16 E-value=23 Score=39.43 Aligned_cols=125 Identities=12% Similarity=0.087 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccC------------CCCCCHHHHHHHHHHHHHcCCEEEE
Q 003698 427 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS------------SRYGNIDELKDVVNKFHDVGMKILG 494 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~ID------------p~~Gt~edfk~LV~~aH~~GIkVIL 494 (802)
...-|.+.||.++..++|.++|---=. ..+++....|=.+- ..+=|.+|+++||+-|.++||.||-
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~--~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDD--QGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecC--CcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 477888889999999999998843211 01222222221111 1122789999999999999999999
Q ss_pred Ee-ccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhc
Q 003698 495 DV-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEI 573 (802)
Q Consensus 495 D~-V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~ 573 (802)
.+ ++-|+..--. .|..+.. ..+. ...+. ..-.....||..+|++.+++.+++...++-+
T Consensus 94 EiD~PGH~~a~~~----~~p~l~~-~~~~-------~~~~~--------~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f 153 (329)
T cd06568 94 EIDMPGHTNAALA----AYPELNC-DGKA-------KPLYT--------GIEVGFSSLDVDKPTTYEFVDDVFRELAALT 153 (329)
T ss_pred ecCCcHHHHHHHH----hChhhcc-CCCC-------Ccccc--------ccCCCCcccCCCCHHHHHHHHHHHHHHHHhC
Confidence 88 5667653110 0000000 0000 00000 0001123589999999999999998887543
No 104
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=77.11 E-value=27 Score=39.21 Aligned_cols=127 Identities=10% Similarity=0.030 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeCC-----------CCC----CCCCCCCCCc----cCCccCC--CCCCHHHHHHHHHHH
Q 003698 427 WYMELKEKATELSSLGFSVIWLPP-----------PTE----SVSPEGYMPR----DLYNLSS--RYGNIDELKDVVNKF 485 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~P-----------I~e----s~s~hGYd~~----Dy~~IDp--~~Gt~edfk~LV~~a 485 (802)
...-|.+.+|.++.+++|.++|-- -+. ..++.++... ......+ .+=|.+|+++||+-|
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA 95 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYA 95 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHHH
Confidence 367788889999999999999832 111 1111111110 0111111 122689999999999
Q ss_pred HHcCCEEEEEe-ccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHH
Q 003698 486 HDVGMKILGDV-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKE 564 (802)
Q Consensus 486 H~~GIkVILD~-V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~ 564 (802)
.++||+||-.+ ++.|+..--.. +..+. +... ...+.+. .......||..+|++.+++.+
T Consensus 96 ~~rgI~VIPEID~PGH~~a~l~~----~pel~----------~~~~-----~~~~~~~-~~~~~~~L~~~~~~t~~f~~~ 155 (357)
T cd06563 96 AERGITVIPEIDMPGHALAALAA----YPELG----------CTGG-----PGSVVSV-QGVVSNVLCPGKPETYTFLED 155 (357)
T ss_pred HHcCCEEEEecCCchhHHHHHHh----Ccccc----------CCCC-----CCccccc-cCcCCCccCCCChhHHHHHHH
Confidence 99999999998 66777532110 00000 0000 0000000 001122488999999999999
Q ss_pred HHHHHHhhc
Q 003698 565 WLCWLRNEI 573 (802)
Q Consensus 565 ~l~~Wi~e~ 573 (802)
++...++-|
T Consensus 156 ll~E~~~lF 164 (357)
T cd06563 156 VLDEVAELF 164 (357)
T ss_pred HHHHHHHhC
Confidence 988887433
No 105
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=76.60 E-value=20 Score=38.83 Aligned_cols=64 Identities=13% Similarity=-0.005 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCC-CCC-CCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 003698 424 SGRWYMELKEKATELSSLGFSVIWLPPPTESVSP-EGY-MPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGD 495 (802)
Q Consensus 424 ~GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~-hGY-d~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD 495 (802)
+|-+.+....-+|+-+++|+..+.+ +..-+ +++ ...|+....+. .++++||+-|+++|++|+|=
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~lw 92 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLV----DAGWYGWEKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWLW 92 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEE----BTTCCGS--TTT--TT-B-TT------HHHHHHHHHHTT-EEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEe----ccccccccccccccccccCCc----cCHHHHHHHHHHcCCCEEEE
Confidence 4668999999999999999999998 22211 111 24555555544 78999999999999999873
No 106
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=76.33 E-value=8 Score=41.06 Aligned_cols=81 Identities=20% Similarity=0.156 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCC
Q 003698 475 IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHS 554 (802)
Q Consensus 475 ~edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~ 554 (802)
..++..++++||++|+||++=+- ++... . |. --..
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~-------~---------------------~~----------------~~~~ 79 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPP-------E---------------------FT----------------AALN 79 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCC-------c---------------------ch----------------hhhc
Confidence 35788999999999999998542 11100 0 00 0124
Q ss_pred ChHHHHHHHHHHHHHHhhcCCceEEeccccccc-----chhHHHHHHhcCC
Q 003698 555 QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW-----GGYVKDYLEATEP 600 (802)
Q Consensus 555 np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~-----~~f~~~~~~~~~p 600 (802)
+++.|+.+++.+..+++++|.||.-||--.... ..|++++.++.++
T Consensus 80 ~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~Lr~~l~~ 130 (253)
T cd06545 80 DPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVTFGDYLVFIRALYAALKK 130 (253)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceeEEeeccCccHhHHHHHHHHHHHHHhh
Confidence 678888888888778889999999999754221 2355665555543
No 107
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=75.63 E-value=19 Score=44.09 Aligned_cols=133 Identities=16% Similarity=0.182 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHhcCCC--EEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC-ccc
Q 003698 426 RWYMELKEKATELSSLGFS--VIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN-HRC 502 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvt--aI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~N-Ht~ 502 (802)
+++..+.+..++.+++||. .+|.-= ....+ -+||.-=+-.|++ |+.+++.+|++|+|+|+=+-++ ++.
T Consensus 308 ~nls~~~dvv~~~~~agiPld~~~~Di----DyMd~--ykDFTvd~~~fp~---~~~fv~~Lh~~G~kyvliidP~is~~ 378 (805)
T KOG1065|consen 308 KNLSVVRDVVENYRAAGIPLDVIVIDI----DYMDG--YKDFTVDKVWFPD---LKDFVDDLHARGFKYVLIIDPFISTN 378 (805)
T ss_pred ccHHHHHHHHHHHHHcCCCcceeeeeh----hhhhc--ccceeeccccCcc---hHHHHHHHHhCCCeEEEEeCCccccC
Confidence 6799999999999999986 555211 11112 3454333346666 9999999999999987655422 111
Q ss_pred ccCCCCCCCCccCCCC---CCCCCCcccCCCCCCCCCCCCCCCCCCC-CCCcccCCChHHHHHHHHHHHHHHhhcCCceE
Q 003698 503 AHYQNQNGVWNIFGGR---LNWDDRAVVADDPHFQGRGNKSSGDNFH-AAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 578 (802)
Q Consensus 503 ~~~~~~~g~~~~f~g~---~~w~~~~~~~~~~~f~~~~~~~~~~~~~-~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGf 578 (802)
. .|..|+.. -.|-. ...+... ..+..++ ...=.|+.||++.....+-++.+-++.++||+
T Consensus 379 ~-------~y~~y~~g~~~~v~I~--------~~~g~~~-~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~ 442 (805)
T KOG1065|consen 379 S-------SYGPYDRGVAKDVLIK--------NREGSPK-MLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGF 442 (805)
T ss_pred c-------cchhhhhhhhhceeee--------cccCchh-hhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccce
Confidence 1 12111110 00000 0000000 0111111 12236788999988888888878889999999
Q ss_pred Eeccc
Q 003698 579 RLDFV 583 (802)
Q Consensus 579 RlD~a 583 (802)
=+|+-
T Consensus 443 wiDmn 447 (805)
T KOG1065|consen 443 WIDMN 447 (805)
T ss_pred EEECC
Confidence 99984
No 108
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=74.11 E-value=4.2 Score=45.27 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHhcCC--CEEEeCCCCCCCCCCCCCCccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 003698 426 RWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 502 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGv--taI~L~PI~es~s~hGYd~~Dy~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~ 502 (802)
.+-..+.+.++.+++.|| ++|+|-.=+. .+|. .+..|+ +|- +.+.||+++|++|+||++-+.+-- .
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~---~f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~v-~ 89 (339)
T cd06603 21 KDQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKR---YFTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPHI-K 89 (339)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCC---ceEeCcccCC---CHHHHHHHHHHCCCEEEEEecCce-e
Confidence 456778888888888765 6677653221 1222 245565 665 558899999999999999876432 2
Q ss_pred ccCCCCCCCCccCCCC--CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHh--hcCCceE
Q 003698 503 AHYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN--EIGYDGW 578 (802)
Q Consensus 503 ~~~~~~~g~~~~f~g~--~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~--e~GIDGf 578 (802)
.+.. +..|... ..+.- .......|.+ ..|.+ ...-+|+.||++++...+.++..+. ..|+|||
T Consensus 90 ~~~~-----~~~y~e~~~~g~~v--k~~~g~~~~~----~~w~g--~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~ 156 (339)
T cd06603 90 RDDG-----YYVYKEAKDKGYLV--KNSDGGDFEG----WCWPG--SSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYI 156 (339)
T ss_pred cCCC-----CHHHHHHHHCCeEE--ECCCCCEEEE----EECCC--CcCCccCCChhHHHHHHHHHHHHhhcccCCCceE
Confidence 2110 0011000 00000 0000000100 00111 1234899999999999999988874 3699999
Q ss_pred Eecccc
Q 003698 579 RLDFVR 584 (802)
Q Consensus 579 RlD~a~ 584 (802)
=+|+..
T Consensus 157 w~D~~E 162 (339)
T cd06603 157 WNDMNE 162 (339)
T ss_pred EeccCC
Confidence 999753
No 109
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=73.26 E-value=25 Score=41.31 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=23.0
Q ss_pred CCCCcceeecccCCCCCcCcCCCCCchHHHHH
Q 003698 676 WWPSRAVTFIENHDTGSTQGHWRFPGGREMQG 707 (802)
Q Consensus 676 ~~P~~~vnfl~nHDt~R~~~~~~~~~~~~klA 707 (802)
.+|.++|.++++||++.+.+-+.......+.-
T Consensus 392 ~~~~nsva~tsTHD~ptl~gww~~~~~~~~~~ 423 (520)
T COG1640 392 YYPPNSVATTSTHDLPTLRGWWEELDEELRRR 423 (520)
T ss_pred hcccceeEEeccCCChhHHHHHhCCCHHHHHH
Confidence 35668999999999998877766444444333
No 110
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=71.75 E-value=14 Score=40.60 Aligned_cols=63 Identities=19% Similarity=0.332 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccC
Q 003698 474 NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 553 (802)
Q Consensus 474 t~edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~ 553 (802)
+.+.+++-|+.||++|+|||+-+ +... +. ...
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSi-----GG~~----~~---------------------------------------~~~ 89 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISI-----GGAN----GH---------------------------------------VDL 89 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEE-----eCCC----Cc---------------------------------------ccc
Confidence 56789999999999999999864 2100 00 012
Q ss_pred CChHHHHHHHHHHHHHHhhcCCceEEecccc
Q 003698 554 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 584 (802)
Q Consensus 554 ~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~ 584 (802)
.++.-++.+++.+..+++++|+||+=||--.
T Consensus 90 ~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~ 120 (312)
T cd02871 90 NHTAQEDNFVDSIVAIIKEYGFDGLDIDLES 120 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEeccc
Confidence 3456678888888888889999999999764
No 111
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=69.32 E-value=22 Score=38.91 Aligned_cols=112 Identities=12% Similarity=0.035 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeCC--CCCCCCCCCCCCccCCccC--CCCCCHHHHHHHHHHHHHcCCEEEEEe-ccCcc
Q 003698 427 WYMELKEKATELSSLGFSVIWLPP--PTESVSPEGYMPRDLYNLS--SRYGNIDELKDVVNKFHDVGMKILGDV-VLNHR 501 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~P--I~es~s~hGYd~~Dy~~ID--p~~Gt~edfk~LV~~aH~~GIkVILD~-V~NHt 501 (802)
...-|.+.++.|+.+|+|.++|== -|+.. .+-.+. ...=|.+|+++|++-|.++||.||-.+ ++-|+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~--------~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~ 86 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYE--------GEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHL 86 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecC--------CCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHH
Confidence 477889999999999999998821 11111 111111 112278999999999999999999876 45666
Q ss_pred cccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcC
Q 003698 502 CAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIG 574 (802)
Q Consensus 502 ~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~G 574 (802)
..--.. .. |.. ..+.. .....||..+|+..+++.+.+...++-+.
T Consensus 87 ~~~l~~--~~---~~~---------------l~~~~--------~~~~~l~~~~~~t~~fi~~li~ev~~~f~ 131 (301)
T cd06565 87 EFILKH--PE---FRH---------------LREVD--------DPPQTLCPGEPKTYDFIEEMIRQVLELHP 131 (301)
T ss_pred HHHHhC--cc---ccc---------------ccccC--------CCCCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 431100 00 100 00000 00123888899999999998888875443
No 112
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=69.03 E-value=17 Score=40.21 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=31.9
Q ss_pred CCcccCCChHHHHHHHHHHHHHHhhcCCceEEecccccc
Q 003698 548 APNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 586 (802)
Q Consensus 548 lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~ 586 (802)
--.+|+.+|+.++.|.+-+...+ +.|+|||-+|.++.+
T Consensus 135 ~~~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDsy 172 (315)
T TIGR01370 135 NYDVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDAF 172 (315)
T ss_pred ceeEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchhh
Confidence 34588999999999998887776 899999999988643
No 113
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=68.00 E-value=3.9 Score=45.18 Aligned_cols=56 Identities=11% Similarity=0.218 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCC--CCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 003698 431 LKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 496 (802)
Q Consensus 431 I~~kLdYLk~LGvtaI~L~PI~es~--s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~ 496 (802)
..+.|..+|.+|+|+|..- |+-+. ...| .-|| -...||.++++.|+++||.|||-.
T Consensus 26 W~~~l~k~ka~G~n~v~~y-v~W~~he~~~g--~~df-------~g~~dl~~f~~~a~~~gl~vilrp 83 (319)
T PF01301_consen 26 WRDRLQKMKAAGLNTVSTY-VPWNLHEPEEG--QFDF-------TGNRDLDRFLDLAQENGLYVILRP 83 (319)
T ss_dssp HHHHHHHHHHTT-SEEEEE---HHHHSSBTT--B----------SGGG-HHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHhCCcceEEEe-ccccccCCCCC--cccc-------cchhhHHHHHHHHHHcCcEEEecc
Confidence 4678888999999999763 22111 1011 1222 235799999999999999999874
No 114
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=67.54 E-value=16 Score=38.56 Aligned_cols=45 Identities=20% Similarity=0.442 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 003698 434 KATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 496 (802)
Q Consensus 434 kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~ 496 (802)
-|.++|+|||++|.++==+ ..+ ..++..+||+.++++|++|+-.+
T Consensus 76 Yl~~~k~lGf~~IEiS~G~-------------~~i-----~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 76 YLNECDELGFEAVEISDGS-------------MEI-----SLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHcCCCEEEEcCCc-------------cCC-----CHHHHHHHHHHHHhCCCeEeccc
Confidence 3459999999999987422 112 36789999999999999999553
No 115
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=66.49 E-value=11 Score=35.12 Aligned_cols=44 Identities=23% Similarity=0.574 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 003698 428 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGD 495 (802)
Q Consensus 428 l~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD 495 (802)
-.-+.+-++.+.++|+.++|+.|= +.-+++++.|+++||+|+-.
T Consensus 65 ~~~~~~~v~~~~~~g~~~v~~~~g------------------------~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVKAVWLQPG------------------------AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-TT------------------------S--HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcc------------------------hHHHHHHHHHHHcCCEEEeC
Confidence 456888999999999999999884 45677889999999999853
No 116
>smart00632 Aamy_C Aamy_C domain.
Probab=64.30 E-value=11 Score=32.78 Aligned_cols=23 Identities=9% Similarity=-0.071 Sum_probs=19.1
Q ss_pred eCC-CEEEEEECCEEEEEEeCCCC
Q 003698 756 AER-DVYAAIIDEKVAMKLGPGHY 778 (802)
Q Consensus 756 ~~~-~v~a~~r~~~~lvvinn~~~ 778 (802)
.++ ++|+|.|+++.+|++|++..
T Consensus 5 ~~~~~~laF~Rg~~g~VaiN~~~~ 28 (81)
T smart00632 5 DNGDNQIAFERGSKGFVAINRSDS 28 (81)
T ss_pred ECCCeEEEEECCCeEEEEEECCCC
Confidence 344 49999999999999999754
No 117
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=64.09 E-value=13 Score=41.35 Aligned_cols=146 Identities=14% Similarity=0.219 Sum_probs=77.3
Q ss_pred eeeeecCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCC---------CCC--CCCC-CCCccCCccCCCCCCHHHHHHHH
Q 003698 415 QGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPT---------ESV--SPEG-YMPRDLYNLSSRYGNIDELKDVV 482 (802)
Q Consensus 415 ~~F~Wd~~~~GGdl~GI~~kLdYLk~LGvtaI~L~PI~---------es~--s~hG-Yd~~Dy~~IDp~~Gt~edfk~LV 482 (802)
||+-.|..++-=.+.-|.+.|+.++.+++|.++|---= ..+ ...| |.... . +. +=|.+|+++||
T Consensus 4 RG~~lD~aR~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~--~-~~-~yT~~di~~lv 79 (351)
T PF00728_consen 4 RGLMLDVARHFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSD--A-GG-YYTKEDIRELV 79 (351)
T ss_dssp EEEEEETSSS-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTC--T-ES-EBEHHHHHHHH
T ss_pred cceeeccCCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCcccccc--c-cc-cCCHHHHHHHH
Confidence 34444433322357889999999999999999983211 111 1111 11111 0 11 33789999999
Q ss_pred HHHHHcCCEEEEEe-ccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHH
Q 003698 483 NKFHDVGMKILGDV-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKD 561 (802)
Q Consensus 483 ~~aH~~GIkVILD~-V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~ 561 (802)
+-|+++||+||-.+ ++-|+..-... +..+.. ..|.. + ...+...+.......||..+|++.++
T Consensus 80 ~yA~~~gI~VIPeid~PGH~~~~l~~----~p~~~~-~~~~~-----~------~~~~~~~~~~~~~~~l~~~~~~t~~~ 143 (351)
T PF00728_consen 80 AYAKERGIEVIPEIDTPGHAEAWLKA----YPELGC-SAWPE-----D------KSWPNSTCWYPDNGVLDPSNPETYEF 143 (351)
T ss_dssp HHHHHTT-EEEEEEEESSS-HHHHHH----HHHHCC-CHTTC-----S------SSCEEEETTSEEEEEE-TTSHHHHHH
T ss_pred HHHHHcCCceeeeccCchHHHHHHHh----Cchhhc-ccccc-----c------cccccccccCCCcccCCCCcHHHHHH
Confidence 99999999999998 67887642110 000000 00000 0 00000000001112488999999999
Q ss_pred HHHHHHHHHhhcCCceEEe
Q 003698 562 IKEWLCWLRNEIGYDGWRL 580 (802)
Q Consensus 562 i~~~l~~Wi~e~GIDGfRl 580 (802)
+.+++...++-+.-.-|.+
T Consensus 144 ~~~l~~e~~~~f~~~~iHi 162 (351)
T PF00728_consen 144 LKDLLDEVADLFPSKYIHI 162 (351)
T ss_dssp HHHHHHHHHHHHTSSEEEE
T ss_pred HHHHHHHHHhhCCCCeEEe
Confidence 9999998886666444444
No 118
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=63.62 E-value=12 Score=42.92 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHH---HHHHHHHHHHHcCCEEEEEe
Q 003698 431 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNID---ELKDVVNKFHDVGMKILGDV 496 (802)
Q Consensus 431 I~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~e---dfk~LV~~aH~~GIkVILD~ 496 (802)
.++-+.|+|+.|+|+|-|+=-+.+- .+.. ..+|.+=..+ =+.+.|+.|.++||+|++|+
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~------~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~ 136 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPIGYWAL-QATD------GDNPYLIGLTQLKILDEAINWAKKLGIYVLIDL 136 (407)
T ss_pred hhhHHHHHHHcCCcEEEcccchhhh-hccC------CCCCCeecchHHHHHHHHHHHHHhcCeeEEEEe
Confidence 4778899999999999974222332 1110 1455544222 46677999999999999996
No 119
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=63.37 E-value=20 Score=38.87 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHH---HHHHHHHHHcCCEEEEEecc
Q 003698 431 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDEL---KDVVNKFHDVGMKILGDVVL 498 (802)
Q Consensus 431 I~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edf---k~LV~~aH~~GIkVILD~V~ 498 (802)
-.+.|.-||..|||.|-|-=.. .+ ||. .=++-.|+..|+ -++.+.|.+.||||++|+-+
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwn-dP----~ds----ngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHY 126 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWN-DP----YDS----NGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHY 126 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEec-CC----ccC----CCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccc
Confidence 3567888999999987652111 11 111 112333444444 45667888999999999854
No 120
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=61.70 E-value=61 Score=36.86 Aligned_cols=141 Identities=13% Similarity=0.043 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCC-CCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccccCCCCC
Q 003698 431 LKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN 509 (802)
Q Consensus 431 I~~kLdYLk~LGvtaI~L~PI~es~-s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~~~ 509 (802)
..+-++-+|+.|...|-|+-=..-. .-|-=..++|..++... ..+-+++|+++|+++||++-+ + |...
T Consensus 83 ~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~---Y-~S~~------ 151 (384)
T smart00812 83 PEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL---Y-HSLF------ 151 (384)
T ss_pred HHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE---E-cCHH------
Confidence 3555677899999988776543322 11222234666666544 557899999999999999988 2 2221
Q ss_pred CCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHH---HHHHHHHHhhcCCceEEecccccc
Q 003698 510 GVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI---KEWLCWLRNEIGYDGWRLDFVRGF 586 (802)
Q Consensus 510 g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i---~~~l~~Wi~e~GIDGfRlD~a~~~ 586 (802)
+|... .|.... .........+...+|+ ..-++.++..||=|.+=+|.+-.-
T Consensus 152 ----------DW~~p-------~y~~~~---------~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~ 205 (384)
T smart00812 152 ----------DWFNP-------LYAGPT---------SSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEA 205 (384)
T ss_pred ----------HhCCC-------cccccc---------ccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 23210 010000 0000112234556677 667778888999999999987422
Q ss_pred cch-----hHHHHHHhcCCcE---EEEeec
Q 003698 587 WGG-----YVKDYLEATEPYF---AVGEYW 608 (802)
Q Consensus 587 ~~~-----f~~~~~~~~~p~~---liGE~w 608 (802)
+.. -+.+++....|.. +|.--|
T Consensus 206 ~~~~~~~~~l~~~~~~~qP~~~~vvvn~R~ 235 (384)
T smart00812 206 PDDYWRSKEFLAWLYNLSPVKDTVVVNDRW 235 (384)
T ss_pred ccchhcHHHHHHHHHHhCCCCceEEEEccc
Confidence 222 1223345556664 665444
No 121
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=60.89 E-value=29 Score=32.14 Aligned_cols=67 Identities=25% Similarity=0.369 Sum_probs=43.3
Q ss_pred eEEeeeeecCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCE
Q 003698 412 ILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK 491 (802)
Q Consensus 412 ~~~~~F~Wd~~~~GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIk 491 (802)
+.+-+|. . . .|=.-.++..++..|++-|+++|+|..=.....+++.-|. .+.++++|+++- |+.
T Consensus 38 ~elvgf~-~-C-gGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~-----------~~~~~~~I~~~~--gi~ 101 (107)
T PF08821_consen 38 VELVGFF-T-C-GGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPH-----------IDEIKKIIEEKF--GIE 101 (107)
T ss_pred eEEEEEe-e-C-CCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCC-----------HHHHHHHHHHHh--CCC
Confidence 4566663 1 1 1223567888999999999999999986666554442222 455555555432 998
Q ss_pred EEE
Q 003698 492 ILG 494 (802)
Q Consensus 492 VIL 494 (802)
||.
T Consensus 102 VV~ 104 (107)
T PF08821_consen 102 VVE 104 (107)
T ss_pred Eee
Confidence 874
No 122
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=60.27 E-value=11 Score=42.08 Aligned_cols=28 Identities=18% Similarity=0.431 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhcCCceEEecccccc
Q 003698 559 RKDIKEWLCWLRNEIGYDGWRLDFVRGF 586 (802)
Q Consensus 559 r~~i~~~l~~Wi~e~GIDGfRlD~a~~~ 586 (802)
+..+++-|...++.||+|||=+|.-...
T Consensus 88 ~~~~a~kLv~lak~yGfDGw~iN~E~~~ 115 (339)
T cd06547 88 SFPVADKLVEVAKYYGFDGWLINIETEL 115 (339)
T ss_pred chHHHHHHHHHHHHhCCCceEeeeeccC
Confidence 4445555666667889999999987766
No 123
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=59.54 E-value=8.8 Score=45.12 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=33.8
Q ss_pred CCH-HHHHHHHHHHHhcCCCEEEeCCCCCCC--CCCCCCCccCCccCCCCCCHHHHH
Q 003698 426 RWY-MELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELK 479 (802)
Q Consensus 426 Gdl-~GI~~kLdYLk~LGvtaI~L~PI~es~--s~hGYd~~Dy~~IDp~~Gt~edfk 479 (802)
||| ..+..-++.+++.|+..++|.|++... ....|.+.+-+.+||.|=+.+.+.
T Consensus 15 GDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPlyI~l~~l~ 71 (496)
T PF02446_consen 15 GDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLYIDLEALP 71 (496)
T ss_dssp --SSHHHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGGS-SHHHH
T ss_pred ecHHHHHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHHcCHHHhh
Confidence 899 899999999999999999999999876 333799999999999987765443
No 124
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=59.24 E-value=14 Score=42.29 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=41.6
Q ss_pred CCCCCcccC-----CChHHHHHHHHHHHHHHhhcCCceEEecccccccchhHHHHHH---hcCCc
Q 003698 545 FHAAPNIDH-----SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE---ATEPY 601 (802)
Q Consensus 545 ~~~lpdln~-----~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~---~~~p~ 601 (802)
|.++.+|.| .||.+|++|.++.+... .-.+|||+|-++..|-.+-+.+++ +++|+
T Consensus 360 WGDcVKLRYG~~peDsP~LW~~M~~Yt~~~A--~iF~G~RiDNCHSTPlhVaeylLd~AR~v~Pn 422 (423)
T PF14701_consen 360 WGDCVKLRYGSKPEDSPFLWKHMKEYTELMA--KIFHGFRIDNCHSTPLHVAEYLLDAARKVNPN 422 (423)
T ss_pred cCceeeecCCCCCCCCHHHHHHHHHHHHHHH--HhcCeeeeecCCCCcHHHHHHHHHHHHhhCCC
Confidence 356677777 57999999999998887 468999999999887665544443 44564
No 125
>PRK15452 putative protease; Provisional
Probab=58.49 E-value=53 Score=38.13 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCC-CCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPP-TESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 494 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI-~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVIL 494 (802)
|++..+...+ +.|.++||+..- |.... ...+| +.++|++.|+.||++|++|.+
T Consensus 11 g~~e~l~aAi----~~GADaVY~G~~~~~~R~----~~~~f--------~~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 11 GTLKNMRYAF----AYGADAVYAGQPRYSLRV----RNNEF--------NHENLALGINEAHALGKKFYV 64 (443)
T ss_pred CCHHHHHHHH----HCCCCEEEECCCccchhh----hccCC--------CHHHHHHHHHHHHHcCCEEEE
Confidence 6665555444 679999999542 22111 11222 568999999999999999977
No 126
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=58.24 E-value=1.4e+02 Score=32.61 Aligned_cols=122 Identities=13% Similarity=0.116 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHH-HHHHHHHHH-HcCCEEEEEeccCcccccCCCC
Q 003698 431 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDE-LKDVVNKFH-DVGMKILGDVVLNHRCAHYQNQ 508 (802)
Q Consensus 431 I~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~ed-fk~LV~~aH-~~GIkVILD~V~NHt~~~~~~~ 508 (802)
+-.-++.|+++|+|+|||-++.+..++.-.+.. |=.+.++--.+| |-+.+=+++ +.|++|..=+.. .+-+-+.
T Consensus 19 l~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~~--YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPv--laf~lp~- 93 (294)
T PF14883_consen 19 LDKLIQRIKDMGINTVYLQAFADPDGDGNADAV--YFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPV--LAFDLPK- 93 (294)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeCCCCCCceeeE--EcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeeh--hhccCCC-
Confidence 555677899999999999998887765544432 334445555555 555552444 889999876654 2211110
Q ss_pred CCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEe
Q 003698 509 NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 580 (802)
Q Consensus 509 ~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRl 580 (802)
.. .|..... . .. .-.....|.--+|++|+.|.++-.-+...-.+||.=|
T Consensus 94 -~~--------~~~~~~~-------~-~~------~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILF 142 (294)
T PF14883_consen 94 -VK--------RADEVRT-------D-RP------DPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILF 142 (294)
T ss_pred -cc--------hhhhccc-------c-CC------CCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 00 0000000 0 00 0112334667789999999999999985559999887
No 127
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=58.21 E-value=24 Score=38.46 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeCCCCCCC-----CCCCCCC--------ccCCccCCCCCCHHHHHHHHHHHHHcCCEEE
Q 003698 427 WYMELKEKATELSSLGFSVIWLPPPTESV-----SPEGYMP--------RDLYNLSSRYGNIDELKDVVNKFHDVGMKIL 493 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~PI~es~-----s~hGYd~--------~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVI 493 (802)
+...+..-|+.+|+-|||+|+++=+-+.. ...|+.+ .||..++|.| -+-+.+.|+.|.++||.+
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~- 104 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEA- 104 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EE-
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeE-
Confidence 34566677999999999999987555433 1123333 2444454333 457888999999999988
Q ss_pred EEeccCc
Q 003698 494 GDVVLNH 500 (802)
Q Consensus 494 LD~V~NH 500 (802)
++|+=|
T Consensus 105 -~lv~~w 110 (289)
T PF13204_consen 105 -ALVPFW 110 (289)
T ss_dssp -EEESS-
T ss_pred -EEEEEE
Confidence 577666
No 128
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=57.95 E-value=44 Score=37.28 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCC---HHHHHHHHHHHHHcCCEEEEEeccCcccccC
Q 003698 430 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 505 (802)
Q Consensus 430 GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt---~edfk~LV~~aH~~GIkVILD~V~NHt~~~~ 505 (802)
..++.....++=|+..|..-...-++...+|. -.+.+-+ .+.||+|++++|++|-++++-+ +|.+...
T Consensus 37 ~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~------~~~~i~~d~~i~~~k~l~~~vh~~Ga~i~~QL--~H~G~~~ 107 (341)
T PF00724_consen 37 RLIAYYERRAKGGAGLIITEATAVSPEGRGFP------GQPGIWDDEQIPGLKKLADAVHAHGAKIIAQL--WHAGRQA 107 (341)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEEESSGGGSSST------TSEBSSSHHHHHHHHHHHHHHHHTTSEEEEEE--E--GGGS
T ss_pred HHHHHHHHHhhcCCceEEeccccccccccccc------ccchhchhhHHHHHHHHHHHHHhcCccceeec--ccccccc
Confidence 44555555566688777665554444222111 1112223 5689999999999999999875 7888765
No 129
>PLN02950 4-alpha-glucanotransferase
Probab=55.17 E-value=36 Score=43.02 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCC------CCCCCccCCccCCCCCCHHHHH
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPTESVSP------EGYMPRDLYNLSSRYGNIDELK 479 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~------hGYd~~Dy~~IDp~~Gt~edfk 479 (802)
|||.++.+-+|.+++.|.+.|+|+|+...... -.|.+.+-+++||.|=+.++|-
T Consensus 280 GDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l~~l~ 339 (909)
T PLN02950 280 GEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALS 339 (909)
T ss_pred eCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCHHHHH
Confidence 99999999999999999999999999876521 2689999999999998876663
No 130
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=54.89 E-value=21 Score=39.36 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCC-EEEeCCCCCCCCCCCCCCccC-CccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 003698 432 KEKATELSSLGFS-VIWLPPPTESVSPEGYMPRDL-YNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 499 (802)
Q Consensus 432 ~~kLdYLk~LGvt-aI~L~PI~es~s~hGYd~~Dy-~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~N 499 (802)
.++|..|++.|++ .|.|.+ ++.+ ..-. ..++..+ |.+++.+.++.+|++||+|.+++.+.
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~--ES~~-----d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGL--ETAN-----DRIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred HHHHHHHHHcCCCEEEEEec--CcCC-----HHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 6889999999998 688765 2211 1112 1455555 88999999999999999999999996
No 131
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=54.72 E-value=27 Score=37.15 Aligned_cols=55 Identities=29% Similarity=0.447 Sum_probs=38.6
Q ss_pred CCCHHH-------HHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 003698 425 GRWYME-------LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 497 (802)
Q Consensus 425 GGdl~G-------I~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V 497 (802)
||||-. +.+-|+++|+|||++|.++= |+- .+ +.++..+||+.|.++|++|+-.+=
T Consensus 73 GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSd--------Gti-----~l-----~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 73 GGTLFEVAYQQGKFDEYLEECKELGFDAIEISD--------GTI-----DL-----PEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp -HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE----------SSS-------------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred CcHHHHHHHhcChHHHHHHHHHHcCCCEEEecC--------Cce-----eC-----CHHHHHHHHHHHHHCCCEEeeccc
Confidence 677654 44668899999999999863 211 11 367899999999999999987764
No 132
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=54.64 E-value=29 Score=34.78 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCccccCCCee-------EEee----CCCEEEEEE
Q 003698 729 YRQEIEALLSVRKRNKIHCRSRVE-------IVKA----ERDVYAAII 765 (802)
Q Consensus 729 l~~~~~~Li~lRk~~~al~~G~~~-------~l~~----~~~v~a~~r 765 (802)
..++|+.|++||+++|.|+-++-+ +... ..+++++..
T Consensus 43 a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~i 90 (168)
T PF11852_consen 43 ASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSI 90 (168)
T ss_dssp HHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEE
T ss_pred HHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEe
Confidence 588999999999999999866533 3333 236777764
No 133
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=54.22 E-value=21 Score=43.62 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCCCC-----CCCCCCCCccCCccCCCCCCHHHHHHHH
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPTES-----VSPEGYMPRDLYNLSSRYGNIDELKDVV 482 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~es-----~s~hGYd~~Dy~~IDp~~Gt~edfk~LV 482 (802)
|||..+.+-++.+++.|.+.+.|+|+... ..+..|.+.+-+.+||.|=..+++-++.
T Consensus 162 GDfgdl~~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~e~l~e~~ 223 (695)
T PRK11052 162 GDFGDLKQMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFQ 223 (695)
T ss_pred ecHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCHHHHhhhh
Confidence 99999999999999999999999999953 2566799999999999998887776653
No 134
>PLN03059 beta-galactosidase; Provisional
Probab=53.98 E-value=18 Score=44.77 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 003698 430 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 496 (802)
Q Consensus 430 GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~ 496 (802)
--.++|.-+|.+|+|+|..==+.-. |--.+.. -.|.+..||.++++.|++.||.|||=.
T Consensus 60 ~W~d~L~k~Ka~GlNtV~tYV~Wn~---HEp~~G~-----~dF~G~~DL~~Fl~la~e~GLyvilRp 118 (840)
T PLN03059 60 MWPDLIQKAKDGGLDVIQTYVFWNG---HEPSPGN-----YYFEDRYDLVKFIKVVQAAGLYVHLRI 118 (840)
T ss_pred HHHHHHHHHHHcCCCeEEEEecccc---cCCCCCe-----eeccchHHHHHHHHHHHHcCCEEEecC
Confidence 3567888899999999974221111 1101111 134568899999999999999999853
No 135
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=51.30 E-value=27 Score=39.20 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCcccc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 503 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIk-VILD~V~NHt~~ 503 (802)
.++|..|+++||+.|.|.. ...+..-+..+ .+-.+.++..+.++.+++.|+. |-+|+++..-+.
T Consensus 100 ~e~l~~l~~~Gv~risiGv-------qS~~~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 164 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGV-------QSFRDDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQ 164 (360)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCChHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCC
Confidence 5889999999999998765 22222223344 4567889999999999999996 789999986543
No 136
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=51.18 E-value=22 Score=31.40 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=18.2
Q ss_pred EeeCCCEEEEEECC----EEEEEEeCCCC
Q 003698 754 VKAERDVYAAIIDE----KVAMKLGPGHY 778 (802)
Q Consensus 754 l~~~~~v~a~~r~~----~~lvvinn~~~ 778 (802)
-..++++|||.|.+ .++||+|.+..
T Consensus 5 ~d~~~~v~af~R~~~~~~~~lvv~Nf~~~ 33 (95)
T PF02806_consen 5 DDNENNVIAFERKDKGDDRVLVVFNFSPE 33 (95)
T ss_dssp EEESSSEEEEEETTTETTEEEEEEESSSS
T ss_pred ccCCCCEEEEEEcCCCCCEEEEEEECCCc
Confidence 34567899999932 57888887665
No 137
>PRK07094 biotin synthase; Provisional
Probab=50.85 E-value=22 Score=39.18 Aligned_cols=63 Identities=8% Similarity=0.038 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 502 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~ 502 (802)
.+.+..|++.|++.+.+..= ..++.-|-.+.+. .+.++..+.++.+|+.||.|..++++.+-+
T Consensus 129 ~e~l~~Lk~aG~~~v~~glE-------s~~~~~~~~i~~~-~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpg 191 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHE-------TADKELYAKLHPG-MSFENRIACLKDLKELGYEVGSGFMVGLPG 191 (323)
T ss_pred HHHHHHHHHcCCCEEEeccc-------cCCHHHHHHhCCC-CCHHHHHHHHHHHHHcCCeecceEEEECCC
Confidence 57788999999999986541 2222333445553 678999999999999999999999998644
No 138
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=50.79 E-value=27 Score=41.05 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCC-EEEEEeccCcc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVLNHR 501 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GI-kVILD~V~NHt 501 (802)
.++|..|+++||+.|.|.|=. .+..-+..+ .+-.+.+++.+.++.|++.|+ .|-+|+++..-
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS-------~~d~vLk~i-gR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLP 331 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQT-------MNDETLKAI-GRHHTVEDIIEKFHLAREMGFDNINMDLIIGLP 331 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCc-------CCHHHHHHh-CCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCC
Confidence 688999999999999988722 222223344 344689999999999999999 78899999753
No 139
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=49.11 E-value=1.5e+02 Score=31.71 Aligned_cols=50 Identities=18% Similarity=0.090 Sum_probs=31.2
Q ss_pred ChHHHHHHHHHHHHHHhhcCCceEEecccccccc----hhHHHHHHhcCCcEEE
Q 003698 555 QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG----GYVKDYLEATEPYFAV 604 (802)
Q Consensus 555 np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~----~f~~~~~~~~~p~~li 604 (802)
+++-|+.+++.+..+++++|+||+-||--..... .+++++.++..+.+++
T Consensus 93 ~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~~~~~~~ll~~Lr~~~~~~~~l 146 (256)
T cd06546 93 DDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMSLDGIIRLIDRLRSDFGPDFII 146 (256)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceEEeeecCCCHhHHHHHHHHHHHHhCCCcEE
Confidence 4555666666677777799999999997653222 3445544444444433
No 140
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=48.01 E-value=44 Score=29.96 Aligned_cols=38 Identities=8% Similarity=0.076 Sum_probs=24.2
Q ss_pred EEeeCCCEEEEEE---CCEEEEEEeCCCCCCCCCCCCeEEEEcC
Q 003698 753 IVKAERDVYAAII---DEKVAMKLGPGHYEPPSGSQNWSFVTEG 793 (802)
Q Consensus 753 ~l~~~~~v~a~~r---~~~~lvvinn~~~~~~~~~~~~~~~~~g 793 (802)
.++.++..+|++| +.+++++++|..... .+.+++.+++
T Consensus 1 piy~d~~~~a~rKG~~g~qvi~vltN~Gs~~---~~~~~~~v~~ 41 (91)
T PF09260_consen 1 PIYSDDSTIAFRKGPDGSQVIVVLTNQGSNS---GGSYTLTVPN 41 (91)
T ss_dssp EEEEETTEEEEEESSTTT-EEEEEE-S-T-T------EEEEESS
T ss_pred CeEECCcEEEEEeCCCCCEEEEEEeCCCcCC---CCcEEEEEcC
Confidence 3678889999999 358999999977644 3457777764
No 141
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=47.48 E-value=24 Score=46.18 Aligned_cols=53 Identities=19% Similarity=0.053 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCCCCC-CC----CCCCCccCCccCCCCCCHHHH
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPTESV-SP----EGYMPRDLYNLSSRYGNIDEL 478 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~es~-s~----hGYd~~Dy~~IDp~~Gt~edf 478 (802)
|||..+.+-++.+++.|.+.|+|+|+.... .+ ..|.+.+-+.+||.|=+.+.+
T Consensus 743 GDf~dl~~~vd~~a~~G~~~~qilPl~~~~~~~p~~~SPYsp~S~~alNplyI~~~~l 800 (1221)
T PRK14510 743 GDFEELYALVDFLAEGGQSLWGVNPLHPLGLGDPERASPYQPSSRRAGNPLLISLDLL 800 (1221)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCccchhccccChhhcCHhhc
Confidence 999999999999999999999999998865 33 679999999999888776544
No 142
>PLN02635 disproportionating enzyme
Probab=46.67 E-value=44 Score=39.69 Aligned_cols=67 Identities=19% Similarity=0.064 Sum_probs=49.7
Q ss_pred eeEEeeeeecCCCCC-CCHHHHH-HHHHHHHhcCCCEEEeCCCCCCC-----CCCCCCCccCCccCCCCCCHHHH
Q 003698 411 EILCQGFNWESHKSG-RWYMELK-EKATELSSLGFSVIWLPPPTESV-----SPEGYMPRDLYNLSSRYGNIDEL 478 (802)
Q Consensus 411 ~~~~~~F~Wd~~~~G-Gdl~GI~-~kLdYLk~LGvtaI~L~PI~es~-----s~hGYd~~Dy~~IDp~~Gt~edf 478 (802)
.+.++-|.-.+ ..| |||.... .-+|.+++.|.+.++|+|+.... .+..|.+.+-+..||.|=+.+.+
T Consensus 31 Gvll~l~SLps-~~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S~fa~NPlyI~le~L 104 (538)
T PLN02635 31 GILLHPTSLPG-PYGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQDANCGNTLLISLEEL 104 (538)
T ss_pred EEEEccccCCC-CCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcccccccccChhhcCHHhh
Confidence 45555544322 245 9998755 89999999999999999998874 45678888888888877665443
No 143
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=45.85 E-value=34 Score=42.06 Aligned_cols=54 Identities=20% Similarity=0.227 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCCCCCC-----C-CCCCCccCCccCCCCCCHHHHH
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPTESVS-----P-EGYMPRDLYNLSSRYGNIDELK 479 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~es~s-----~-hGYd~~Dy~~IDp~~Gt~edfk 479 (802)
|||..+.+-+|.+++.|.+.|+|+|+..... + -.|.+.+-+++||.|=+.+.+.
T Consensus 80 GDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L~ 139 (745)
T PLN03236 80 GDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKELV 139 (745)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHhh
Confidence 8999999999999999999999999987652 2 3799999999999888776653
No 144
>PTZ00445 p36-lilke protein; Provisional
Probab=45.66 E-value=48 Score=34.49 Aligned_cols=62 Identities=19% Similarity=0.182 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCCEEEe---CCCCCCCCCCCCCCccCCccCCCCCC--HHHHHHHHHHHHHcCCEEEE
Q 003698 430 ELKEKATELSSLGFSVIWL---PPPTESVSPEGYMPRDLYNLSSRYGN--IDELKDVVNKFHDVGMKILG 494 (802)
Q Consensus 430 GI~~kLdYLk~LGvtaI~L---~PI~es~s~hGYd~~Dy~~IDp~~Gt--~edfk~LV~~aH~~GIkVIL 494 (802)
.+-.-.+.|+++||.+|-+ +=+..- -..||+-.+ +-+..+++ ..+|+.|++++++.||+|++
T Consensus 30 ~~~~~v~~L~~~GIk~Va~D~DnTlI~~-HsgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 30 SADKFVDLLNECGIKVIASDFDLTMITK-HSGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHHHHHHcCCeEEEecchhhhhhh-hcccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 3444456899999999964 111100 124555443 33444443 45799999999999999975
No 145
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=45.10 E-value=59 Score=35.57 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=25.9
Q ss_pred CChHHHHHHHHHHHHHHhhcCCceEEecccc
Q 003698 554 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 584 (802)
Q Consensus 554 ~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~ 584 (802)
+++..|+.+++.+..+++++|.||+-||--.
T Consensus 83 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~ 113 (313)
T cd02874 83 SNPEARQRLINNILALAKKYGYDGVNIDFEN 113 (313)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCcEEEeccc
Confidence 4678888888888888889999999999754
No 146
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=44.90 E-value=32 Score=39.70 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEE-EEeccCcccc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL-GDVVLNHRCA 503 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVI-LD~V~NHt~~ 503 (802)
.++|..|+++||+.|.|.- ...+......+.-.. +.++..+.++.+|+.|+.+| +|+.++.-+.
T Consensus 141 ~e~l~~l~~~G~~rvslGv-------QS~~~~~L~~l~R~~-~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~q 205 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGV-------QSFHDSELHALHRPQ-KRADVHQALEWIRAAGFPILNIDLIYGIPGQ 205 (430)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHhCCCC-CHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 5889999999999998754 111111122333222 77899999999999999865 9999886553
No 147
>PRK06256 biotin synthase; Validated
Probab=44.87 E-value=29 Score=38.48 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 500 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NH 500 (802)
.+.+..||+.|++.+.++. ++ + ..-|-.+.+. .+.++..+.++.||+.||+|...+++.+
T Consensus 152 ~e~l~~LkeaG~~~v~~~l--Et-s-----~~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHNL--ET-S-----RSYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHHHhCCCEEecCC--cc-C-----HHHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 5778899999999998753 33 2 2223445543 3788999999999999999999999976
No 148
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=44.17 E-value=2.9e+02 Score=29.77 Aligned_cols=96 Identities=9% Similarity=0.112 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccccCCCCC
Q 003698 430 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN 509 (802)
Q Consensus 430 GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~~~ 509 (802)
...+-++...+.|++.|.+. ...++ .+.++..|+.|+++|++|..-+.+-..+.
T Consensus 92 ~~~~di~~~~~~g~~~iri~---~~~~~-----------------~~~~~~~i~~ak~~G~~v~~~i~~~~~~~------ 145 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIF---DALND-----------------VRNLEVAIKAVKKAGKHVEGAICYTGSPV------ 145 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEe---ecCCh-----------------HHHHHHHHHHHHHCCCeEEEEEEecCCCC------
Confidence 35667778889999998772 11111 57899999999999999886442211100
Q ss_pred CCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEe-cccccccc
Q 003698 510 GVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFWG 588 (802)
Q Consensus 510 g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRl-D~a~~~~~ 588 (802)
+ -.+++.+.++... +.|+|.+++ |.+..+.+
T Consensus 146 -----------~------------------------------------~~~~~~~~~~~~~-~~Ga~~i~l~DT~G~~~P 177 (275)
T cd07937 146 -----------H------------------------------------TLEYYVKLAKELE-DMGADSICIKDMAGLLTP 177 (275)
T ss_pred -----------C------------------------------------CHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCH
Confidence 0 0356777777776 899999999 88888777
Q ss_pred hhHHHHHHhcC
Q 003698 589 GYVKDYLEATE 599 (802)
Q Consensus 589 ~f~~~~~~~~~ 599 (802)
..+.++++.++
T Consensus 178 ~~v~~lv~~l~ 188 (275)
T cd07937 178 YAAYELVKALK 188 (275)
T ss_pred HHHHHHHHHHH
Confidence 76666666553
No 149
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=44.10 E-value=47 Score=35.84 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 500 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NH 500 (802)
.+.|..||+.|++.|.+. ++ .+ +.-|..+.+. .+.++..+.++.+|+.||+|...+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~--~E-~~-----~~~~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN--LD-TS-----QEFYSNIIST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEc--cc-CC-----HHHHhhccCC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 678899999999999987 33 21 1122334433 4788999999999999999998888865
No 150
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=44.10 E-value=40 Score=38.03 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCcccc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 503 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIk-VILD~V~NHt~~ 503 (802)
.++|+.|+++||+.|.|..= ..+..-...+. +-.+.++..+.++.+++.|+. |.+|++++.-+.
T Consensus 108 ~e~l~~l~~~G~~rvslGvQ-------S~~~~~L~~l~-R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgq 172 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGMQ-------SAAPHVLAVLD-RTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGE 172 (375)
T ss_pred HHHHHHHHHcCCCEEEEecc-------cCCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCC
Confidence 58899999999999997641 11122122232 345788899999999999999 999999986543
No 151
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=43.12 E-value=92 Score=31.43 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=25.7
Q ss_pred CChHHHHHHHHHHHHHHhhcCCceEEecccc
Q 003698 554 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 584 (802)
Q Consensus 554 ~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~ 584 (802)
.++..|+.+++.+..+++++|.||+-+|.-.
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~ 114 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWEY 114 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeeeC
Confidence 4567788888888888889999999999765
No 152
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=41.17 E-value=95 Score=32.29 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCC--ccCCccCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003698 428 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMP--RDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 494 (802)
Q Consensus 428 l~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~--~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVIL 494 (802)
-..|..-.+.|+++|+..+.|+|.+.... ++|.- .+|.--+-..=+.++++++.+.+.++|+++++
T Consensus 144 ~e~i~~ia~~l~~l~~~~~~llpyh~~g~-~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 144 RENMQQALDVLIPLGIKQIHLLPFHQYGE-PKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCccch-hHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 45566666788889999999999665441 11110 01111122223678999999999999999975
No 153
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=41.17 E-value=25 Score=38.31 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEec
Q 003698 474 NIDELKDVVNKFHDVGMKILGDVV 497 (802)
Q Consensus 474 t~edfk~LV~~aH~~GIkVILD~V 497 (802)
+.++++++.+-||++||+|.||+-
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 478999999999999999999985
No 154
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=40.96 E-value=48 Score=37.25 Aligned_cols=60 Identities=18% Similarity=0.291 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEeCCCCCCC-----------------CCCCCCCccCCccCCCCCCHHHHHHHHHHHH
Q 003698 424 SGRWYMELKEKATELSSLGFSVIWLPPPTESV-----------------SPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 486 (802)
Q Consensus 424 ~GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~-----------------s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH 486 (802)
+||++.-+.-- ||.+||++.++-|.-... +|-++++ -|+.++.+-||
T Consensus 111 YGGT~~lf~~t---l~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~~~v-------------~Die~ia~iAh 174 (426)
T COG2873 111 YGGTYNLFSHT---LKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDV-------------LDIEAIAEIAH 174 (426)
T ss_pred cCchHHHHHHH---HHhcCcEEEEeCCCCHHHHHHHhCcccceEEEEeccCCCccc-------------cCHHHHHHHHH
Confidence 47775533222 699999999997754211 3333333 36899999999
Q ss_pred HcCCEEEEEeccC
Q 003698 487 DVGMKILGDVVLN 499 (802)
Q Consensus 487 ~~GIkVILD~V~N 499 (802)
++|+-+|+|=.|-
T Consensus 175 ~~gvpliVDNT~a 187 (426)
T COG2873 175 RHGVPLIVDNTFA 187 (426)
T ss_pred HcCCcEEEecCCC
Confidence 9999999995543
No 155
>PRK05660 HemN family oxidoreductase; Provisional
Probab=40.73 E-value=45 Score=37.72 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEE-EEEeccCcccc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI-LGDVVLNHRCA 503 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkV-ILD~V~NHt~~ 503 (802)
.++|..|+++|||.|.|.. ...+..-+..+. +..+.++..+-++.|++.|++. -+|+.+..-+.
T Consensus 107 ~e~l~~Lk~~Gv~risiGv-------qS~~~~~L~~l~-r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgq 171 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGV-------QSFSEEKLKRLG-RIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQ 171 (378)
T ss_pred HHHHHHHHHcCCCEEEecc-------CcCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 4899999999999999865 233333333443 4468889999999999999975 49999986553
No 156
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=40.64 E-value=54 Score=40.40 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccC
Q 003698 476 DELKDVVNKFHDVGMKILGDVVLN 499 (802)
Q Consensus 476 edfk~LV~~aH~~GIkVILD~V~N 499 (802)
.+++++-+.|+++||.||.|+.+-
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIg 297 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIG 297 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 478889999999999999999885
No 157
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=39.81 E-value=56 Score=34.85 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003698 430 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 494 (802)
Q Consensus 430 GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVIL 494 (802)
-+.+.++.++++|+++|.|.+.... -...+.++ +.+++++|.+.+.++||+|..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~---~~~~~~~~--------~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESD---ERLARLDW--------SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcc---cccccccC--------CHHHHHHHHHHHHHcCCCceE
Confidence 3688999999999999999643100 00111111 456789999999999999874
No 158
>PRK15447 putative protease; Provisional
Probab=39.81 E-value=78 Score=34.68 Aligned_cols=57 Identities=9% Similarity=0.262 Sum_probs=40.6
Q ss_pred eeecCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003698 417 FNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 494 (802)
Q Consensus 417 F~Wd~~~~GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVIL 494 (802)
|.|. .|++... ...|++.|+++||+.-..-+. + . .| +.+++++.|+.||++|.+|.+
T Consensus 10 ~~~p----~~~~~~~---~~~~~~~gaDaVY~g~~~~~~---R---~-------~f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 10 YYWP----KETVRDF---YQRAADSPVDIVYLGETVCSK---R---R-------EL-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred cCCC----CCCHHHH---HHHHHcCCCCEEEECCccCCC---c---c-------CC-CHHHHHHHHHHHHHcCCEEEE
Confidence 5674 4665544 456788999999998311111 1 0 12 779999999999999999998
No 159
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=39.70 E-value=32 Score=35.29 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeCCCCCCC---CCCCCCCccCCccCCCCCC--------HHHHHHHHHHHHHcCCEEEEE
Q 003698 427 WYMELKEKATELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGD 495 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~PI~es~---s~hGYd~~Dy~~IDp~~Gt--------~edfk~LV~~aH~~GIkVILD 495 (802)
+...+.+.+..|+++||. |.|-=+-... ..-..-+.||-++|+.+-. ..-++.+++.||..|++||.+
T Consensus 131 ~~~~~~~~i~~l~~~G~~-ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 131 DDESAVATLQRLRELGVR-IALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred ChHHHHHHHHHHHHCCCE-EEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 445566889999999997 4443221111 1111234678888876542 245899999999999999999
Q ss_pred eccCcc
Q 003698 496 VVLNHR 501 (802)
Q Consensus 496 ~V~NHt 501 (802)
.|=+..
T Consensus 210 gVe~~~ 215 (241)
T smart00052 210 GVETPE 215 (241)
T ss_pred cCCCHH
Confidence 997754
No 160
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=38.87 E-value=1.2e+02 Score=35.14 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-ccCcccc
Q 003698 474 NIDELKDVVNKFHDVGMKILGDV-VLNHRCA 503 (802)
Q Consensus 474 t~edfk~LV~~aH~~GIkVILD~-V~NHt~~ 503 (802)
|.+|..++|+-|+-|||+||-.+ ++.|++.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 78999999999999999999988 6788875
No 161
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=37.87 E-value=50 Score=38.37 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCccc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRC 502 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIk-VILD~V~NHt~ 502 (802)
.+.|..|+++||+.|.|.. ...+..-...++ +-.+.++..+.++.+++.|+. |-+|+.+..-+
T Consensus 152 ~e~l~~L~~~G~~rvsiGv-------QS~~~~vl~~l~-R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPg 215 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV-------QDFDPQVQKAIN-RIQPEEMVARAVELLRAAGFESINFDLIYGLPH 215 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-------CCCCHHHHHHhC-CCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCC
Confidence 6899999999999999875 222222223333 336888999999999999997 88999887544
No 162
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=37.81 E-value=88 Score=28.90 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=39.3
Q ss_pred HHHHhcCCCEEEeCCCCCCC-CCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003698 436 TELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 494 (802)
Q Consensus 436 dYLk~LGvtaI~L~PI~es~-s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVIL 494 (802)
..|..+|+.++.+.+..... .-......|..-+=+.=|...++.++++.||++|++||.
T Consensus 20 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 20 ATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 45677899999886642111 111123333333335667889999999999999999885
No 163
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.38 E-value=3e+02 Score=31.03 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccCcccccC
Q 003698 475 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 505 (802)
Q Consensus 475 ~edfk~LV~~aH~~GIkVILD~V~NHt~~~~ 505 (802)
.+.|++|++++|++|=++++=+ +|.|...
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr~~ 105 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQL--WHVGAMR 105 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEec--cCCCCCc
Confidence 4689999999999999988776 7877643
No 164
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=37.37 E-value=34 Score=39.58 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=43.9
Q ss_pred CcceeEEeeeeecCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHH
Q 003698 408 TGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD 487 (802)
Q Consensus 408 ~~y~~~~~~F~Wd~~~~GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~ 487 (802)
-||++++.+|- .| =+.|-||++|-|++|=+==.|-.. -||+ ..+.-=+.++|+-||.
T Consensus 413 aG~~IyIDDFG------TG-----YSnL~YLq~L~VDaLKIDKsFvdt--lg~~----------~a~~~I~~hII~MAk~ 469 (524)
T COG4943 413 AGHEIYIDDFG------TG-----YSNLHYLQSLPVDALKIDKSFVDT--LGTD----------SASHLIAPHIIEMAKS 469 (524)
T ss_pred cCCeEEEccCc------Cc-----chhHHHHhhCCccceeccHHHHHh--hccC----------cccchhHHHHHHHHHH
Confidence 46788888773 12 356889999988777332211110 1111 1222358899999999
Q ss_pred cCCEEEEEecc
Q 003698 488 VGMKILGDVVL 498 (802)
Q Consensus 488 ~GIkVILD~V~ 498 (802)
.||++|..+|=
T Consensus 470 L~L~iVaEGVE 480 (524)
T COG4943 470 LGLKIVAEGVE 480 (524)
T ss_pred cCCcEEeeccc
Confidence 99999999885
No 165
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=37.37 E-value=3.2e+02 Score=31.05 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccCcc-cccC
Q 003698 475 IDELKDVVNKFHDVGMKILGDVVLNHR-CAHY 505 (802)
Q Consensus 475 ~edfk~LV~~aH~~GIkVILD~V~NHt-~~~~ 505 (802)
.+.||+|++++|++|-++++=+ +|. +...
T Consensus 82 i~~~k~l~davh~~G~~i~~QL--~H~~Gr~~ 111 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQL--TAGFGRVC 111 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEc--cCcCCCcc
Confidence 4679999999999999999555 686 6543
No 166
>PRK01060 endonuclease IV; Provisional
Probab=37.25 E-value=74 Score=33.94 Aligned_cols=52 Identities=10% Similarity=0.119 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEE
Q 003698 429 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI 492 (802)
Q Consensus 429 ~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkV 492 (802)
.++.+.|+.++++|+++|.|.+-- .+.+. +..-+.+++++|-+.+.++||+|
T Consensus 12 ~~~~~~l~~~~~~G~d~vEl~~~~----p~~~~--------~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 12 GGLEGAVAEAAEIGANAFMIFTGN----PQQWK--------RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCC----CCCCc--------CCCCCHHHHHHHHHHHHHcCCCC
Confidence 347889999999999999986421 11111 21237888999999999999995
No 167
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=36.87 E-value=62 Score=36.20 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCccc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRC 502 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIk-VILD~V~NHt~ 502 (802)
.++|..|+++|||.|-|.. ...+..-...+ .+-.+.++..+.++.+++.|+. |-+|++++.-+
T Consensus 98 ~e~l~~l~~~GvnRiSiGv-------QS~~~~~L~~l-gR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGV-------QSFNEDKLKFL-GRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHc-CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 6899999999999998653 12222222233 3445788999999999999996 66999997544
No 168
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=36.71 E-value=65 Score=38.67 Aligned_cols=60 Identities=12% Similarity=0.131 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 003698 431 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 498 (802)
Q Consensus 431 I~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~ 498 (802)
-.+.|...|++|+++|+- .+|-+. |--.+.-| .|.+.-||.++|+.||+.|+.|+|=+=+
T Consensus 51 W~~~i~k~k~~Gln~Iqt-YVfWn~--Hep~~g~y-----~FsG~~DlvkFikl~~~~GLyv~LRiGP 110 (649)
T KOG0496|consen 51 WPDLIKKAKAGGLNVIQT-YVFWNL--HEPSPGKY-----DFSGRYDLVKFIKLIHKAGLYVILRIGP 110 (649)
T ss_pred hHHHHHHHHhcCCceeee-eeeccc--ccCCCCcc-----cccchhHHHHHHHHHHHCCeEEEecCCC
Confidence 356777889999999984 333332 11111111 4778889999999999999999997653
No 169
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=36.39 E-value=87 Score=32.25 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEE
Q 003698 431 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI 492 (802)
Q Consensus 431 I~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkV 492 (802)
+...+..|+++|++.|=..|+- -+-..+||+.+.++|-++||.+
T Consensus 137 vetAiaml~dmG~~SiKffPm~------------------Gl~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFFPMG------------------GLKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHHTT--EEEE---T------------------TTTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHHcCCCeeeEeecC------------------CcccHHHHHHHHHHHHHcCcee
Confidence 6778899999999999988853 1235789999999999999876
No 170
>PRK13561 putative diguanylate cyclase; Provisional
Probab=36.14 E-value=55 Score=39.59 Aligned_cols=71 Identities=8% Similarity=0.095 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCCCCC---CCC------CCCCccCCccCCCC-----CCHHHHHHHHHHHHHcCCE
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPTESV---SPE------GYMPRDLYNLSSRY-----GNIDELKDVVNKFHDVGMK 491 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~es~---s~h------GYd~~Dy~~IDp~~-----Gt~edfk~LV~~aH~~GIk 491 (802)
.+...+...+..|+++||..-. =..+ ++- ..-+.||-+||..| .+..-++.+++-||..||+
T Consensus 531 ~~~~~~~~~~~~l~~~G~~i~l----ddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~ 606 (651)
T PRK13561 531 DDPHAAVAILRPLRNAGVRVAL----DDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQ 606 (651)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE----ECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCc
Confidence 4677889999999999997553 1111 111 12367888898654 2345689999999999999
Q ss_pred EEEEeccCc
Q 003698 492 ILGDVVLNH 500 (802)
Q Consensus 492 VILD~V~NH 500 (802)
||..+|=+.
T Consensus 607 viAegVE~~ 615 (651)
T PRK13561 607 VIAEGVETE 615 (651)
T ss_pred EEEecCCCH
Confidence 999998764
No 171
>PLN02950 4-alpha-glucanotransferase
Probab=35.89 E-value=74 Score=40.34 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccC
Q 003698 476 DELKDVVNKFHDVGMKILGDVVLN 499 (802)
Q Consensus 476 edfk~LV~~aH~~GIkVILD~V~N 499 (802)
.+++++.+.|+++||+||.|+.+-
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpig 484 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIG 484 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 378889999999999999999884
No 172
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=35.48 E-value=56 Score=36.70 Aligned_cols=63 Identities=21% Similarity=0.180 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCccc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRC 502 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIk-VILD~V~NHt~ 502 (802)
.++|+-|+++|++.|.+.- .. .+..-...+. +-.+.++..+.++.+++.|+. |-+|++++.-+
T Consensus 103 ~e~l~~lk~~G~nrisiGv-QS------~~d~vL~~l~-R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPg 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGV-QS------MNNNILKQLN-RTHTIQDSKEAINLLHKNGIYNISCDFLYCLPI 166 (353)
T ss_pred HHHHHHHHHcCCCEEEEec-cc------CCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCC
Confidence 5889999999999998643 11 1111122222 335788999999999999997 99999998644
No 173
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=34.97 E-value=44 Score=37.37 Aligned_cols=147 Identities=12% Similarity=0.052 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCC-CCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccccCCCCC
Q 003698 431 LKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN 509 (802)
Q Consensus 431 I~~kLdYLk~LGvtaI~L~PI~es~-s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~~~ 509 (802)
..+=++-+|++|...|-|+--+... .-|-=..++|..++.. +..+=+++|+++|+++|||+.+ -+.+. .
T Consensus 93 ~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~-~krDiv~El~~A~rk~Glk~G~--Y~S~~-d------ 162 (346)
T PF01120_consen 93 ADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSG-PKRDIVGELADACRKYGLKFGL--YYSPW-D------ 162 (346)
T ss_dssp HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGG-GTS-HHHHHHHHHHHTT-EEEE--EEESS-S------
T ss_pred HHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCC-CCCCHHHHHHHHHHHcCCeEEE--Eecch-H------
Confidence 4556678899999999887654433 1122233455555522 2457899999999999999998 22221 1
Q ss_pred CCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCC-ChHHHHHHHHHHHHHHhhcCCceEEecccccccc
Q 003698 510 GVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHS-QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG 588 (802)
Q Consensus 510 g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~-np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~ 588 (802)
|....... ...... ...++..-. ...+.++...-++.++.+|.+|.+=+|....-..
T Consensus 163 -----------w~~~~~~~-----~~~~~~------~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~~~ 220 (346)
T PF01120_consen 163 -----------WHHPDYPP-----DEEGDE------NGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPDPD 220 (346)
T ss_dssp -----------CCCTTTTS-----SCHCHH------CC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSCCC
T ss_pred -----------hcCcccCC-----CccCCc------ccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCccc
Confidence 11100000 000000 000000000 1124446777788899999999999999864222
Q ss_pred h-----hHHHHHHhcCCcEEEEeecC
Q 003698 589 G-----YVKDYLEATEPYFAVGEYWD 609 (802)
Q Consensus 589 ~-----f~~~~~~~~~p~~liGE~w~ 609 (802)
+ -+.+.+++..|..+|.--|.
T Consensus 221 ~~~~~~~~~~~i~~~qp~~ii~~r~~ 246 (346)
T PF01120_consen 221 EDWDSAELYNWIRKLQPDVIINNRWG 246 (346)
T ss_dssp THHHHHHHHHHHHHHSTTSEEECCCS
T ss_pred cccCHHHHHHHHHHhCCeEEEecccC
Confidence 1 12233555677755544444
No 174
>TIGR03356 BGL beta-galactosidase.
Probab=34.92 E-value=79 Score=36.49 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 003698 428 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 497 (802)
Q Consensus 428 l~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V 497 (802)
+.-..+-++-||+||++++=++=-....-..|-. . ..-...+-++++|++|+++||++|+++.
T Consensus 53 y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~-----~--~n~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 53 YHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTG-----P--VNPKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred HHhHHHHHHHHHHcCCCeEEcccchhhcccCCCC-----C--cCHHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 5667889999999999998764322111111100 0 1112346688999999999999999986
No 175
>PRK10060 RNase II stability modulator; Provisional
Probab=34.86 E-value=30 Score=42.14 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCC---CCCCCCCCCCccCCccCCCCC--------CHHHHHHHHHHHHHcCCEEEE
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPT---ESVSPEGYMPRDLYNLSSRYG--------NIDELKDVVNKFHDVGMKILG 494 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~---es~s~hGYd~~Dy~~IDp~~G--------t~edfk~LV~~aH~~GIkVIL 494 (802)
.+...+.+.|..|+++||..-. -=+- .+-++-..-+.|+-+||..|= ...-++.++..||+.||+||.
T Consensus 538 ~~~~~~~~~l~~L~~~G~~ial-DdfGtg~ssl~~L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viA 616 (663)
T PRK10060 538 ENEELALSVIQQFSQLGAQVHL-DDFGTGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIA 616 (663)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-ECCCCchhhHHHHHhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEE
Confidence 4577888999999999997543 1110 000111223688889996552 245689999999999999999
Q ss_pred EeccCc
Q 003698 495 DVVLNH 500 (802)
Q Consensus 495 D~V~NH 500 (802)
++|=+.
T Consensus 617 eGVEt~ 622 (663)
T PRK10060 617 EGVETA 622 (663)
T ss_pred ecCCCH
Confidence 999764
No 176
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=34.80 E-value=1.4e+02 Score=32.64 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=36.6
Q ss_pred HHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCC---CHHHHHHHHHHHHHcCCEEEEEeccCcccccC
Q 003698 438 LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYG---NIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 505 (802)
Q Consensus 438 Lk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~G---t~edfk~LV~~aH~~GIkVILD~V~NHt~~~~ 505 (802)
.++=|+.-|..-..+-++...+| .-.+.+- ..+.+|+|++++|+.|-++++= ++|.+...
T Consensus 42 ra~gg~glii~e~~~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Q--l~h~G~~~ 104 (327)
T cd02803 42 RAKGGVGLIITEAAYVDPEGKGY------PGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQ--LAHAGRQA 104 (327)
T ss_pred HhCcCCcEEEECcEEEcCcccCC------CCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHH--hhCCCcCC
Confidence 34446777766554444432221 1111121 3568999999999999998754 58887654
No 177
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=34.74 E-value=62 Score=37.55 Aligned_cols=64 Identities=13% Similarity=0.166 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCcccc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 503 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIk-VILD~V~NHt~~ 503 (802)
.+.|..|+++|++.|.|.. ...+..-+..+.- -.+.++..+.++.+++.|++ |-+|+.+..-+.
T Consensus 151 ~e~l~~lk~~G~~risiGv-------qS~~~~~l~~l~r-~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGV-------QDFNKEVQQAVNR-IQPEEMIFELMNHAREAGFTSINIDLIYGLPKQ 215 (455)
T ss_pred HHHHHHHHHcCCCEEEEcC-------CCCCHHHHHHhCC-CCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCC
Confidence 6889999999999998764 2222222223332 36788899999999999997 779998876553
No 178
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=34.00 E-value=2.8e+02 Score=31.37 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccCcccccC
Q 003698 475 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 505 (802)
Q Consensus 475 ~edfk~LV~~aH~~GIkVILD~V~NHt~~~~ 505 (802)
.+.|++|++++|++|-++++=+. |.+...
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL~--H~G~~~ 110 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIELW--HGGAHA 110 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEecc--cCCCCC
Confidence 57899999999999999988764 888654
No 179
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=33.74 E-value=66 Score=37.48 Aligned_cols=60 Identities=18% Similarity=0.319 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 499 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~N 499 (802)
.+.|+.+++.|++.|.+.. ++.+ ..-...++... +.++..+.++.+|+.||.|..++++.
T Consensus 287 ~e~l~~l~~aG~~~v~iGi--ES~s-----~~~L~~~~K~~-~~~~~~~~i~~~~~~Gi~v~~~~IiG 346 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGY--ESGD-----QQILKNIKKGL-TVEIARRFTRDCHKLGIKVHGTFILG 346 (472)
T ss_pred HHHHHHHHHcCCCEEEEcC--CCCC-----HHHHHHhcCCC-CHHHHHHHHHHHHHCCCeEEEEEEEe
Confidence 5778999999999998654 2221 11112233222 67889999999999999999999985
No 180
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=33.62 E-value=3.8e+02 Score=28.75 Aligned_cols=103 Identities=13% Similarity=0.135 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccccCCCCCCC
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGV 511 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~~~g~ 511 (802)
++.|+...+.|++.|.+.= ..-..+..+++|+.|+++|++|.+.+..-+..
T Consensus 85 ~~~l~~a~~~gv~~iri~~--------------------~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~--------- 135 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAF--------------------HKHEFDEALPLIKAIKEKGYEVFFNLMAISGY--------- 135 (266)
T ss_pred HHHHHHHhcCCcCEEEEec--------------------ccccHHHHHHHHHHHHHCCCeEEEEEEeecCC---------
Confidence 4556677889999887731 11157889999999999999887665543210
Q ss_pred CccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEe-cccccccchh
Q 003698 512 WNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGY 590 (802)
Q Consensus 512 ~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRl-D~a~~~~~~f 590 (802)
+ .+++.+.++... ++|+|.+++ |.+..+.+.-
T Consensus 136 -------------------------------------------~---~~~~~~~~~~~~-~~g~~~i~l~DT~G~~~P~~ 168 (266)
T cd07944 136 -------------------------------------------S---DEELLELLELVN-EIKPDVFYIVDSFGSMYPED 168 (266)
T ss_pred -------------------------------------------C---HHHHHHHHHHHH-hCCCCEEEEecCCCCCCHHH
Confidence 0 356777777766 789999998 8888777665
Q ss_pred HHHHHHhc----CCcEEEEeecCC
Q 003698 591 VKDYLEAT----EPYFAVGEYWDS 610 (802)
Q Consensus 591 ~~~~~~~~----~p~~liGE~w~~ 610 (802)
..++++.+ .++.-+|=+.++
T Consensus 169 v~~lv~~l~~~~~~~~~i~~H~Hn 192 (266)
T cd07944 169 IKRIISLLRSNLDKDIKLGFHAHN 192 (266)
T ss_pred HHHHHHHHHHhcCCCceEEEEeCC
Confidence 55555443 333445444443
No 181
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=33.32 E-value=97 Score=32.88 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEE
Q 003698 430 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL 493 (802)
Q Consensus 430 GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVI 493 (802)
-+.+.|+.++++|+++|.|.+- ..|-|. +.+ +..++++|.+++.++||+|.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~----~~~~~~--------~~~-~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGG----RPHAFA--------PDL-KAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccC----Cccccc--------ccc-CchHHHHHHHHHHHcCCeEE
Confidence 3789999999999999998420 011111 111 34578889999999999985
No 182
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=33.21 E-value=1.2e+02 Score=29.88 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 496 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~ 496 (802)
-||.-..+..+-|+++||..-- .-.|-|+ |++.+.+++++|+++|++||+=+
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~-----~VvSAHR--------------TPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEV-----RVVSAHR--------------TPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEE-----EEEeccC--------------CHHHHHHHHHHHHHCCCeEEEec
Confidence 4788888888899999986532 0113344 89999999999999999999854
No 183
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=33.18 E-value=2.2e+02 Score=31.86 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccCcccccC
Q 003698 475 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 505 (802)
Q Consensus 475 ~edfk~LV~~aH~~GIkVILD~V~NHt~~~~ 505 (802)
.+.+++|++++|++|-+++ +=++|.|...
T Consensus 77 i~~~~~l~~~vh~~G~~i~--~QL~h~G~~~ 105 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAI--LQIFHAGRMA 105 (353)
T ss_pred hHHHHHHHHHHHhCCCeEE--EEecCCCCCC
Confidence 5789999999999999988 5678887654
No 184
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=32.32 E-value=46 Score=37.83 Aligned_cols=67 Identities=15% Similarity=0.232 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEeC---CCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcc
Q 003698 425 GRWYMELKEKATELSSLGFSVIWLP---PPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 501 (802)
Q Consensus 425 GGdl~GI~~kLdYLk~LGvtaI~L~---PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt 501 (802)
.++++.+...|..||.+||++|-+- -|.|..+...|+ ..-.++|.+-+++.|+||..=+-|.-|
T Consensus 12 ~~~~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~yd-------------Ws~Y~~l~~~vr~~GLk~~~vmsfH~c 78 (402)
T PF01373_consen 12 DNDWNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYD-------------WSGYRELFEMVRDAGLKLQVVMSFHQC 78 (402)
T ss_dssp TSECHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB----------------HHHHHHHHHHHHTT-EEEEEEE-S-B
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccC-------------cHHHHHHHHHHHHcCCeEEEEEeeecC
Confidence 4678899999999999999999652 122333333343 345788999999999999999999877
Q ss_pred ccc
Q 003698 502 CAH 504 (802)
Q Consensus 502 ~~~ 504 (802)
+..
T Consensus 79 GgN 81 (402)
T PF01373_consen 79 GGN 81 (402)
T ss_dssp SSS
T ss_pred CCC
Confidence 643
No 185
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=32.25 E-value=3.8e+02 Score=29.76 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccCcccccC
Q 003698 475 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 505 (802)
Q Consensus 475 ~edfk~LV~~aH~~GIkVILD~V~NHt~~~~ 505 (802)
.+.|++|++++|++|-++++-+ +|.|...
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql--~h~G~~~ 109 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQL--NHPGRQS 109 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc--cCCCcCC
Confidence 5689999999999999998765 6887654
No 186
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=32.10 E-value=83 Score=36.51 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCC-EEEEEeccCcccc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVLNHRCA 503 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GI-kVILD~V~NHt~~ 503 (802)
.++|..|+++|++.|.|.. ...+..-...+. +-.+.++..+.++.+++.|+ .|-+|+.++.-+.
T Consensus 151 ~e~l~~l~~aG~~risiGv-------qS~~~~~L~~l~-r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGV-------QDFDPEVQKAVN-RIQPFEFTFALVEAARELGFTSINIDLIYGLPKQ 215 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-------CCCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCC
Confidence 5889999999999998764 112222222333 33588899999999999999 8999999886553
No 187
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=31.70 E-value=73 Score=37.78 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 502 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~ 502 (802)
.++|+.|+++|+|.|.|..=.-+. .-...++ +--+.++..+.++.+++.|++|.+|+.++--+
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d-------~VL~~in-Rght~~~v~~Ai~~lr~~G~~v~~~LM~GLPg 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYN-------DILERTK-RGHTVRDVVEATRLLRDAGLKVVYHIMPGLPG 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCH-------HHHHHhC-CCCCHHHHHHHHHHHHHcCCeEEEEeecCCCC
Confidence 689999999999999986511111 1112222 23467888899999999999999999998544
No 188
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=31.42 E-value=67 Score=31.24 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 501 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt 501 (802)
.+.++.|+++|+..|+++-= ..+...+..+...-++.++..+.++.+++.|+.|...+++..-
T Consensus 88 ~~~~~~l~~~g~~~i~i~le-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~ 150 (204)
T cd01335 88 EELLKELKELGLDGVGVSLD-------SGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLG 150 (204)
T ss_pred HHHHHHHHhCCCceEEEEcc-------cCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecC
Confidence 56778888889999987642 2222223333345667889999999999999999999998643
No 189
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=31.35 E-value=6.2e+02 Score=27.58 Aligned_cols=123 Identities=19% Similarity=0.278 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccccCCC
Q 003698 428 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN 507 (802)
Q Consensus 428 l~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~ 507 (802)
++-+-.++..|.+-+++.|-+=|-. ...+..=.+.++++.+. +.|.++|.=+-+-.......
T Consensus 29 ~ql~d~~~~~i~~~~f~llVVDps~-------------~g~~~~~~~~eelr~~~----~gg~~pIAYlsIg~ae~yR~- 90 (300)
T COG2342 29 YQLQDAYINEILNSPFDLLVVDPSY-------------CGPFNTPWTIEELRTKA----DGGVKPIAYLSIGEAESYRF- 90 (300)
T ss_pred hhcccchHHHHhcCCCcEEEEeccc-------------cCCCCCcCcHHHHHHHh----cCCeeEEEEEechhhhhhhh-
Confidence 3345667778888888888765521 22222334567887664 45667776655543332111
Q ss_pred CCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEecccccc
Q 003698 508 QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 586 (802)
Q Consensus 508 ~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~ 586 (802)
.|+..... ..+.+-+..++ .|.+--.+.|..|+-++-+...+...+ +.|+||.-||.++..
T Consensus 91 ------------Ywd~~w~~-~~p~wLg~edP----~W~Gny~VkYW~~eWkdii~~~l~rL~-d~GfdGvyLD~VD~y 151 (300)
T COG2342 91 ------------YWDKYWLT-GRPDWLGEEDP----EWPGNYAVKYWEPEWKDIIRSYLDRLI-DQGFDGVYLDVVDAY 151 (300)
T ss_pred ------------Hhhhhhhc-CCcccccCCCC----CCCCCceeeccCHHHHHHHHHHHHHHH-HccCceEEEeeechH
Confidence 12111000 11111111111 122222467788998888888999998 899999999999755
No 190
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=31.29 E-value=77 Score=27.61 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=15.3
Q ss_pred eeCCCEEEEEE--CCEEEEEEeCCCCCC
Q 003698 755 KAERDVYAAII--DEKVAMKLGPGHYEP 780 (802)
Q Consensus 755 ~~~~~v~a~~r--~~~~lvvinn~~~~~ 780 (802)
...+++|+|.| +++.++++-|++.++
T Consensus 6 ~P~~gvYvYfR~~~~~tVmVilN~n~~~ 33 (78)
T PF10438_consen 6 APQDGVYVYFRYYDGKTVMVILNKNDKE 33 (78)
T ss_dssp --BTTEEEEEEEESSEEEEEEEE-SSS-
T ss_pred CccCCEEEEEEEcCCCEEEEEEcCCCCC
Confidence 45678999988 565555555555554
No 191
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=30.39 E-value=76 Score=31.32 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 499 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~N 499 (802)
....--|+.||..+..+. .|+..++...-..+.+.++++.+++.|++|++|....
T Consensus 40 ~n~a~~l~~LG~~~~~~~-------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~ 94 (196)
T cd00287 40 ANVAVALARLGVSVTLVG-------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGPR 94 (196)
T ss_pred HHHHHHHHHCCCcEEEEE-------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 334445677899888777 4444554432224788999999999999999999754
No 192
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=30.28 E-value=78 Score=36.13 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCccc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRC 502 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIk-VILD~V~NHt~ 502 (802)
.++|..|+++|||.|.|..= -.+..-...++ +--+.++..+.++.+++.|+. |-+|+.+..-+
T Consensus 115 ~e~l~~l~~~GvnrislGvQ-------S~~d~~L~~l~-R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPg 178 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQ-------AFQDELLALCG-RSHRVKDIFAAVDLIHQAGIENFSLDLISGLPH 178 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcc-------cCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC
Confidence 58899999999999997641 11122122222 334788899999999999999 78999998654
No 193
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=29.96 E-value=5.9e+02 Score=27.08 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhcCCceEEe-cccccccchhHHHHHHhc
Q 003698 560 KDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGYVKDYLEAT 598 (802)
Q Consensus 560 ~~i~~~l~~Wi~e~GIDGfRl-D~a~~~~~~f~~~~~~~~ 598 (802)
+++.+.++... +.|+|.+++ |++..+.+.-+.++++.+
T Consensus 141 ~~~~~~~~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l 179 (263)
T cd07943 141 EELAEQAKLME-SYGADCVYVTDSAGAMLPDDVRERVRAL 179 (263)
T ss_pred HHHHHHHHHHH-HcCCCEEEEcCCCCCcCHHHHHHHHHHH
Confidence 56777777776 899999998 777777777666666554
No 194
>PLN02389 biotin synthase
Probab=29.59 E-value=1.1e+02 Score=34.67 Aligned_cols=60 Identities=13% Similarity=0.241 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 500 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NH 500 (802)
.+.|..||+.|++.+.+ .++.. +.-|-.+-+. .+.++-.+.++.||+.||+|..=+++.|
T Consensus 178 ~E~l~~LkeAGld~~~~--~LeTs------~~~y~~i~~~-~s~e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNH--NLDTS------REYYPNVITT-RSYDDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred HHHHHHHHHcCCCEEEe--eecCC------hHHhCCcCCC-CCHHHHHHHHHHHHHcCCeEeEEEEECC
Confidence 67888999999999865 22221 2224444432 2788888999999999999999999998
No 195
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=29.52 E-value=70 Score=30.29 Aligned_cols=59 Identities=10% Similarity=0.052 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCCCCCCCCC-----------CCCCccCCccCCCCCCHHHHHHHHHHHHH
Q 003698 429 MELKEKATELSSLGFSVIWLPPPTESVSPE-----------GYMPRDLYNLSSRYGNIDELKDVVNKFHD 487 (802)
Q Consensus 429 ~GI~~kLdYLk~LGvtaI~L~PI~es~s~h-----------GYd~~Dy~~IDp~~Gt~edfk~LV~~aH~ 487 (802)
..+.+.|+.|.+.|++.|.+.|.+-.++-| .|.-....--.|-+.+.+|++.+++++++
T Consensus 56 p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 56 DTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFKKGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHhCCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 357889999999999999999999877322 11111112223666677888888887764
No 196
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=29.33 E-value=92 Score=35.09 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCcccc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 503 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIk-VILD~V~NHt~~ 503 (802)
.+.|..|+++|++.|.+.. ...+..-+..+. +-.+.++..+.++.+++.|+. |-+|+.+..-+.
T Consensus 100 ~e~l~~l~~~G~~rvsiGv-------qS~~~~~l~~l~-r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgq 164 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGV-------QTFNDELLKKIG-RTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQ 164 (377)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCC
Confidence 5889999999999998765 222222222333 345788999999999999998 678999986554
No 197
>PLN02803 beta-amylase
Probab=29.23 E-value=1.4e+02 Score=35.16 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhcCCCEEEeC---CCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccccc
Q 003698 429 MELKEKATELSSLGFSVIWLP---PPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 504 (802)
Q Consensus 429 ~GI~~kLdYLk~LGvtaI~L~---PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~ 504 (802)
+++...|..||.+||++|-+- -|.|..+...|+- .-.++|++-+++.|+||..=+-|.-||..
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW-------------sgY~~l~~mvr~~GLKlq~vmSFHqCGGN 172 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNW-------------EGYAELVQMVQKHGLKLQVVMSFHQCGGN 172 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCc-------------HHHHHHHHHHHHcCCeEEEEEEecccCCC
Confidence 789999999999999999653 2333334444443 34688899999999999999999877754
No 198
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=28.98 E-value=4.4e+02 Score=29.44 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccccCCCCCCCC
Q 003698 433 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVW 512 (802)
Q Consensus 433 ~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~~~g~~ 512 (802)
+.|+-..+.|++.|-+.= +....+..++.|+.|+++|++|..-+..-|...
T Consensus 92 ~dl~~a~~~gvd~iri~~--------------------~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~--------- 142 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVAT--------------------HCTEADVSEQHIGLARELGMDTVGFLMMSHMAP--------- 142 (337)
T ss_pred HHHHHHHHcCCCEEEEEE--------------------ecchHHHHHHHHHHHHHCCCeEEEEEEeccCCC---------
Confidence 345667788999987531 111135789999999999999877665433210
Q ss_pred ccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEe-cccccccchhH
Q 003698 513 NIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGYV 591 (802)
Q Consensus 513 ~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRl-D~a~~~~~~f~ 591 (802)
.+++.+.++... ++|+|.+++ |.+..+.+..+
T Consensus 143 ----------------------------------------------~e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P~~v 175 (337)
T PRK08195 143 ----------------------------------------------PEKLAEQAKLME-SYGAQCVYVVDSAGALLPEDV 175 (337)
T ss_pred ----------------------------------------------HHHHHHHHHHHH-hCCCCEEEeCCCCCCCCHHHH
Confidence 256777777766 899999997 88887777655
Q ss_pred HHHHHh----cCCcEEEEeecCC
Q 003698 592 KDYLEA----TEPYFAVGEYWDS 610 (802)
Q Consensus 592 ~~~~~~----~~p~~liGE~w~~ 610 (802)
.++++. .+|+.-+|=+.++
T Consensus 176 ~~~v~~l~~~l~~~i~ig~H~Hn 198 (337)
T PRK08195 176 RDRVRALRAALKPDTQVGFHGHN 198 (337)
T ss_pred HHHHHHHHHhcCCCCeEEEEeCC
Confidence 555443 3455556655554
No 199
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=28.60 E-value=7.7e+02 Score=27.46 Aligned_cols=67 Identities=15% Similarity=0.048 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCC---HHHHHHHHHHHHHcCCEEEEEeccCcccccC
Q 003698 431 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 505 (802)
Q Consensus 431 I~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt---~edfk~LV~~aH~~GIkVILD~V~NHt~~~~ 505 (802)
.++....+++=|+..|..-.++-++...+| +. .+.+-+ .+.|++|++++|++|-++++ =++|.+...
T Consensus 35 ~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~-~~-----~~~l~~d~~i~~~~~l~~~vh~~g~~~~~--Ql~H~G~~~ 104 (343)
T cd04734 35 YIAYHEERARGGAGLIITEGSSVHPSDSPA-FG-----NLNASDDEIIPGFRRLAEAVHAHGAVIMI--QLTHLGRRG 104 (343)
T ss_pred HHHHHHHHHhCCCCEEEEeeeeeCCcccCC-CC-----ccccCCHHHHHHHHHHHHHHHhcCCeEEE--eccCCCcCc
Confidence 444445555667888876555544432222 11 122223 45899999999999999998 668877644
No 200
>PF03714 PUD: Bacterial pullanase-associated domain; InterPro: IPR005323 Domain is found in pullanase - carbohydrate de-branching - proteins. It is found both to the N or the C-termini of of the alpha-amylase active site region. This domain contains several conserved aromatic residues that are suggestive of a carbohydrate binding function.; GO: 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2J43_A 2J44_A 2YA1_A 2FHC_A 2FHB_A 2FHF_A 2J73_B 2J72_A 2J71_A.
Probab=28.56 E-value=1.1e+02 Score=27.77 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=33.7
Q ss_pred ccccCCCCcceeeEeecCceeeeEEEEEcCcccccccCCCceeEeCCC
Q 003698 254 LQPKEGGKGCSRLFTVDEEFAGFLFVLKLNENTWLKCMENDFYIPLTS 301 (802)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~Fvl~~~~~~W~k~~g~df~v~~~~ 301 (802)
|.+.++ .+.+-.|.+..+...|.|+++.+ +-|+.+.|.+|.++.
T Consensus 39 f~~~D~-~G~~~~i~~~~~~~~igfIv~~~---~~kd~~~D~~i~~~~ 82 (103)
T PF03714_consen 39 FTGTDD-FGAYADIPLKGGASKIGFIVRKG---DWKDQGGDRFIDLTS 82 (103)
T ss_dssp GSEEET-TEEEEEEEBSTSSSEEEEEEEET---TEECSSSEEEEETTT
T ss_pred cceeCC-CceEEEEEeCCCCCEEEEEEEcC---CCCCCCCCEEEEecc
Confidence 344333 55677788877777799999997 667799999999865
No 201
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=28.53 E-value=1.2e+02 Score=31.15 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEE-----EeCCCCCCC-----------CCCCCCCccCCccCCCCCCHHHHHHHHHHHHH
Q 003698 424 SGRWYMELKEKATELSSLGFSVI-----WLPPPTESV-----------SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD 487 (802)
Q Consensus 424 ~GGdl~GI~~kLdYLk~LGvtaI-----~L~PI~es~-----------s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~ 487 (802)
.|-+|..+++.+......|+++= |.+||+... +-||+-+.|. .+||-..|-++|++
T Consensus 75 ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDl--------PpEEa~~~Rne~~k 146 (268)
T KOG4175|consen 75 NGTTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDL--------PPEEAETLRNEARK 146 (268)
T ss_pred cCCcHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccC--------ChHHHHHHHHHHHh
Confidence 36789999999999999999973 336777654 4466666553 46788889999999
Q ss_pred cCCEEEEEeccCcc
Q 003698 488 VGMKILGDVVLNHR 501 (802)
Q Consensus 488 ~GIkVILD~V~NHt 501 (802)
+||.+|.=+.+..+
T Consensus 147 ~gislvpLvaPsTt 160 (268)
T KOG4175|consen 147 HGISLVPLVAPSTT 160 (268)
T ss_pred cCceEEEeeCCCCh
Confidence 99999886666543
No 202
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=28.51 E-value=1.4e+02 Score=31.44 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCCEEEeCC
Q 003698 431 LKEKATELSSLGFSVIWLPP 450 (802)
Q Consensus 431 I~~kLdYLk~LGvtaI~L~P 450 (802)
+.+.|+.++++|+++|.|..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~ 36 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMF 36 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcC
Confidence 66778889999999999854
No 203
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=27.96 E-value=85 Score=33.42 Aligned_cols=69 Identities=17% Similarity=0.320 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCC--------CCccCCccCCCCCC--------HHHHHHHHHHHHHcC
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGY--------MPRDLYNLSSRYGN--------IDELKDVVNKFHDVG 489 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGY--------d~~Dy~~IDp~~Gt--------~edfk~LV~~aH~~G 489 (802)
.+..-+...+..|+++||..- | =+.+ -|| -+.|+-+||..|-. ..-++.+|+-||+.|
T Consensus 133 ~~~~~~~~~l~~L~~~G~~ia-l---DDFG--tG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~ 206 (256)
T COG2200 133 DDLDTALALLRQLRELGVRIA-L---DDFG--TGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLG 206 (256)
T ss_pred cCHHHHHHHHHHHHHCCCeEE-E---ECCC--CCHHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCC
Confidence 345567778888888887532 2 1111 222 35667788866633 246999999999999
Q ss_pred CEEEEEeccCc
Q 003698 490 MKILGDVVLNH 500 (802)
Q Consensus 490 IkVILD~V~NH 500 (802)
|+||..+|=+-
T Consensus 207 ~~vvaEGVEt~ 217 (256)
T COG2200 207 LTVVAEGVETE 217 (256)
T ss_pred CEEEEeecCCH
Confidence 99999998653
No 204
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=27.95 E-value=1e+02 Score=33.17 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 003698 433 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 500 (802)
Q Consensus 433 ~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NH 500 (802)
+.+..+.+-.+..|++.++. ++ .|+ .=+.+++++|++.||++|+.||+|.++..
T Consensus 123 ~~~~~~~~~~~~~v~i~~~~-~~--tG~-----------~~~~~~l~~l~~~~~~~~~~~ivD~a~~~ 176 (350)
T cd00609 123 ELLEAAKTPKTKLLYLNNPN-NP--TGA-----------VLSEEELEELAELAKKHGILIISDEAYAE 176 (350)
T ss_pred HHHHhhcCccceEEEEECCC-CC--CCc-----------ccCHHHHHHHHHHHHhCCeEEEEecchhh
Confidence 44444555567788877622 21 111 12468899999999999999999999754
No 205
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=27.55 E-value=97 Score=34.96 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCcccc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 503 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIk-VILD~V~NHt~~ 503 (802)
.++|+.|+++|||.|.|..= -.+..-...+. +--+.++..+.++.|++.|+. |-+|+++..-+.
T Consensus 103 ~~~l~~l~~~G~nrislGvQ-------S~~~~~L~~l~-R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgq 167 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQ-------TFDDPLLKLLG-RTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQ 167 (370)
T ss_pred HHHHHHHHHCCCCEEEEccc-------cCCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 58899999999999987541 11122122232 233678888899999999996 889999986543
No 206
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=27.26 E-value=1.6e+02 Score=33.09 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 003698 425 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 496 (802)
Q Consensus 425 GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~ 496 (802)
.|++..+ ..+-+-|+++||+.=- +... .++. .+| +.++|+++|+.||++|.|+++=+
T Consensus 13 ag~l~~l----~~ai~~GADaVY~G~~-~~~~-R~~a-~nf--------s~~~l~e~i~~ah~~gkk~~V~~ 69 (347)
T COG0826 13 AGNLEDL----KAAIAAGADAVYIGEK-EFGL-RRRA-LNF--------SVEDLAEAVELAHSAGKKVYVAV 69 (347)
T ss_pred CCCHHHH----HHHHHcCCCEEEeCCc-cccc-cccc-ccC--------CHHHHHHHHHHHHHcCCeEEEEe
Confidence 3555544 4444568999998743 2221 1222 223 56779999999999999998644
No 207
>TIGR03586 PseI pseudaminic acid synthase.
Probab=26.91 E-value=1.5e+02 Score=32.93 Aligned_cols=71 Identities=13% Similarity=0.186 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEeCCCCCCC-----CCCCCCCcc-CCccCCCCC-------CHHHHHHHHHHHHHcCC
Q 003698 424 SGRWYMELKEKATELSSLGFSVIWLPPPTESV-----SPEGYMPRD-LYNLSSRYG-------NIDELKDVVNKFHDVGM 490 (802)
Q Consensus 424 ~GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~-----s~hGYd~~D-y~~IDp~~G-------t~edfk~LV~~aH~~GI 490 (802)
|.|++.-..+.++-.++.|.++|=+-=..... ..-.|...+ .+.-.+.|. +.+++++|.+.|++.||
T Consensus 12 H~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi 91 (327)
T TIGR03586 12 HNGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGL 91 (327)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCC
Confidence 57999999999999999999998664321111 001111111 111011111 35688999999999999
Q ss_pred EEEE
Q 003698 491 KILG 494 (802)
Q Consensus 491 kVIL 494 (802)
.++-
T Consensus 92 ~~~s 95 (327)
T TIGR03586 92 TIFS 95 (327)
T ss_pred cEEE
Confidence 8874
No 208
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=26.88 E-value=1.2e+02 Score=32.14 Aligned_cols=49 Identities=12% Similarity=0.170 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 003698 430 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 500 (802)
Q Consensus 430 GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NH 500 (802)
|+..-++.+++.|++.|-+.-. + .++++.+++.++++||+.++=+.++-
T Consensus 92 G~~~fi~~~~~aG~~giiipDl-------------------~---~ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPDL-------------------P---PEEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECCC-------------------C---HHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 5677888899999998887521 1 26899999999999999998777654
No 209
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=26.70 E-value=1.2e+02 Score=31.70 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCE
Q 003698 430 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK 491 (802)
Q Consensus 430 GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIk 491 (802)
-+...+..|||+|.+.|=..|+-= +-..+||+++.++|-++|+.
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~G------------------l~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGG------------------LKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCC------------------cccHHHHHHHHHHHHHcCCc
Confidence 367789999999999999888641 12345666666666666654
No 210
>PRK12928 lipoyl synthase; Provisional
Probab=26.67 E-value=2.2e+02 Score=31.13 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 003698 425 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 499 (802)
Q Consensus 425 GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~N 499 (802)
|=+...+.+.|+.|+++|++.|.+.+...... .. -.=.+|=++++|+++-+.|.+.|.+-|.-+.+=
T Consensus 215 GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~-~~-------~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~~ 281 (290)
T PRK12928 215 GETEDEVIETLRDLRAVGCDRLTIGQYLRPSL-AH-------LPVQRYWTPEEFEALGQIARELGFSHVRSGPLV 281 (290)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCc-cC-------CceeeccCHHHHHHHHHHHHHcCCceeEecCcc
Confidence 45789999999999999999999877543322 11 122367789999999999999998877665554
No 211
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=26.64 E-value=1.7e+02 Score=32.58 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=61.8
Q ss_pred cceeEEeeeeecCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCCC-C-------------------CCCCCCC------C
Q 003698 409 GFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTE-S-------------------VSPEGYM------P 462 (802)
Q Consensus 409 ~y~~~~~~F~Wd~~~~GGdl~GI~~kLdYLk~LGvtaI~L~PI~e-s-------------------~s~hGYd------~ 462 (802)
+.++.+|+.+ +..+-|..+..+++..|.+.|++.|-+.=.-. + ..+|+|. .
T Consensus 19 daPI~VQSMT---nT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g 95 (361)
T COG0821 19 DAPIVVQSMT---NTDTADVEATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVADIHFDYRLALEAAECG 95 (361)
T ss_pred CCceEEEecc---CCCcccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcC
Confidence 4567888876 33467899999999999999999998852221 1 1222211 1
Q ss_pred ccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEEE
Q 003698 463 RDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGD 495 (802)
Q Consensus 463 ~Dy~~IDp-~~Gt~edfk~LV~~aH~~GIkVILD 495 (802)
.|=+.|+| .+|..+.|+++|++|.++|+-|=+=
T Consensus 96 ~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIG 129 (361)
T COG0821 96 VDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIG 129 (361)
T ss_pred cceEEECCcccCcHHHHHHHHHHHHHcCCCEEEe
Confidence 55578887 7899999999999999999877543
No 212
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.49 E-value=1.2e+02 Score=32.37 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEE
Q 003698 430 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL 493 (802)
Q Consensus 430 GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVI 493 (802)
.+.+.|+.++++|+++|.|.+-. .. ..+++.--+.+++++|.+.+.++||+|.
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~~-~~----------~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVDE-TD----------DRLSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecCC-cc----------chhhccCCCHHHHHHHHHHHHHcCCCce
Confidence 47899999999999999995321 10 1122222257889999999999999985
No 213
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=26.46 E-value=58 Score=38.92 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEe
Q 003698 424 SGRWYMELKEKATELSSLGFSVIWL 448 (802)
Q Consensus 424 ~GGdl~GI~~kLdYLk~LGvtaI~L 448 (802)
.=|+.+.+.+.++.+.+.|+..|.=
T Consensus 76 ~~Gt~~d~~~lv~~~h~~gi~vilD 100 (551)
T PRK10933 76 TYGTLDDFDELVAQAKSRGIRIILD 100 (551)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3488999999999999999987753
No 214
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=25.68 E-value=6.9e+02 Score=27.58 Aligned_cols=97 Identities=13% Similarity=0.119 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccccCCC
Q 003698 428 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN 507 (802)
Q Consensus 428 l~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~ 507 (802)
.+.=.+.+.++++.|.|+=.--| +...+|+-.-++.|--+ ..++|++|+++|++.|++.+.=+-+-.
T Consensus 14 ~e~R~~l~~f~~~~kmN~YiYAP--KdDpyhr~~Wre~Yp~~----el~~l~~L~~~a~~~~V~Fv~aisPg~------- 80 (306)
T PF07555_consen 14 HEDRLDLIRFLGRYKMNTYIYAP--KDDPYHRSKWREPYPEE----ELAELKELADAAKANGVDFVYAISPGL------- 80 (306)
T ss_dssp HHHHHHHHHHHHHTT--EEEE----TT-TTTTTTTTS---HH----HHHHHHHHHHHHHHTT-EEEEEEBGTT-------
T ss_pred HHHHHHHHHHHHHcCCceEEECC--CCChHHHhhhcccCCHH----HHHHHHHHHHHHHHcCCEEEEEECccc-------
Confidence 45556667788999999766444 11233433222222222 357999999999999998876443310
Q ss_pred CCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEe
Q 003698 508 QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 580 (802)
Q Consensus 508 ~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRl 580 (802)
++.+++++..+.|+.=+.... +.||+-|-+
T Consensus 81 ------------------------------------------~~~~s~~~d~~~L~~K~~ql~-~lGvr~Fai 110 (306)
T PF07555_consen 81 ------------------------------------------DICYSSEEDFEALKAKFDQLY-DLGVRSFAI 110 (306)
T ss_dssp ------------------------------------------T--TSHHHHHHHHHHHHHHHH-CTT--EEEE
T ss_pred ------------------------------------------ccccCcHHHHHHHHHHHHHHH-hcCCCEEEE
Confidence 122334566677777777777 899999887
No 215
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=25.58 E-value=61 Score=33.19 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeCCCCCCCC---CCCCCCccCCccCCCC--------CCHHHHHHHHHHHHHcCCEEEEE
Q 003698 427 WYMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLYNLSSRY--------GNIDELKDVVNKFHDVGMKILGD 495 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~PI~es~s---~hGYd~~Dy~~IDp~~--------Gt~edfk~LV~~aH~~GIkVILD 495 (802)
+...+.+.+..|+++|+. |.|-=+-.... .-..-..||-++|..+ ....-++.++..||..|++||+.
T Consensus 130 ~~~~~~~~~~~l~~~G~~-l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 208 (240)
T cd01948 130 DLEEALATLRRLRALGVR-IALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAE 208 (240)
T ss_pred CHHHHHHHHHHHHHCCCe-EEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEE
Confidence 455688899999999997 33321111110 1112235677777554 33557999999999999999999
Q ss_pred eccCccc
Q 003698 496 VVLNHRC 502 (802)
Q Consensus 496 ~V~NHt~ 502 (802)
.|=|...
T Consensus 209 gVe~~~~ 215 (240)
T cd01948 209 GVETEEQ 215 (240)
T ss_pred ecCCHHH
Confidence 9987643
No 216
>PLN02801 beta-amylase
Probab=25.50 E-value=1.7e+02 Score=34.26 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeC---CCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 003698 427 WYMELKEKATELSSLGFSVIWLP---PPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 503 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~---PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~ 503 (802)
+-+++...|..||.+||++|-+- -|.|..+...|+- ...++|++-+++.|+||..=+-|.-||.
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdW-------------sgY~~l~~mvr~~GLKlq~vmSFHqCGG 101 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDW-------------SAYRSLFELVQSFGLKIQAIMSFHQCGG 101 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCc-------------HHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 46689999999999999999653 2333334444543 4568899999999999999999987775
Q ss_pred c
Q 003698 504 H 504 (802)
Q Consensus 504 ~ 504 (802)
.
T Consensus 102 N 102 (517)
T PLN02801 102 N 102 (517)
T ss_pred C
Confidence 4
No 217
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=25.19 E-value=2.6e+02 Score=31.04 Aligned_cols=61 Identities=10% Similarity=0.164 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 499 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~N 499 (802)
.+.++.|++.|++.|.++= .|.++.-+..+-..-|+-+...+.++.+++.|++|.+-+|++
T Consensus 95 ~e~~~~L~~~g~~~v~iSl-------dg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~ 155 (358)
T TIGR02109 95 EARLDALADAGLDHVQLSF-------QGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVIH 155 (358)
T ss_pred HHHHHHHHhCCCCEEEEeC-------cCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEec
Confidence 4577889999999998753 344333222332223445556667788889999988777764
No 218
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=25.16 E-value=3e+02 Score=30.14 Aligned_cols=140 Identities=11% Similarity=0.179 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCC---HHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 003698 427 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVLNHRCA 503 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt---~edfk~LV~~aH~~GIkVILD~V~NHt~~ 503 (802)
+-+-+.++..-||+-|+|++-+-== .--++-.|...| .+....++ --|.+-+|++|+++||.+|.-+|.=.-..
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~K-dd~G~lty~s~d--~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD~~ 151 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVK-DDYGELTYPSSD--EINKYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFKDTI 151 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEec-CCCccEeccccc--hhhhhhhccccccccHHHHHHHHhcCeEEEEEEEEeeeee
Confidence 3445677888999999999864210 000223344443 23333333 24788899999999999999987632111
Q ss_pred cCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCC--CCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEec
Q 003698 504 HYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRG--NKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 581 (802)
Q Consensus 504 ~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~--~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD 581 (802)
-..+.+-....+.+-..|.- |...+ .+.. ..--++--++.+|+|=+.+++.-+ ++|+|-..||
T Consensus 152 l~~~n~fk~av~~~gKpw~~---------~~ngaLrKe~~-----~ehWVd~y~~~~WeYNvtIAKEa~-~fGfdEiQFD 216 (400)
T COG1306 152 LAKENPFKIAVYKDGKPWKA---------FTNGALRKESD-----GEHWVDAYDKNLWEYNVTIAKEAA-KFGFDEIQFD 216 (400)
T ss_pred EEeecCceEEEEcCCCcchh---------hhccccccccc-----ceeeecccchhhhhhhHHHHHHHH-HcCccceeee
Confidence 00000000000000011211 11000 0000 111155568999999999999988 8999999999
Q ss_pred ccc
Q 003698 582 FVR 584 (802)
Q Consensus 582 ~a~ 584 (802)
-..
T Consensus 217 YIR 219 (400)
T COG1306 217 YIR 219 (400)
T ss_pred EEE
Confidence 874
No 219
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=24.95 E-value=1.6e+02 Score=32.41 Aligned_cols=60 Identities=13% Similarity=0.299 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEEEecc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVL 498 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIk-VILD~V~ 498 (802)
.+.++.|++.|++.|.++- ++.++.-|..+-..-|+.+...+-++.|.+.|+. |-+-+|+
T Consensus 102 ~~~~~~L~~~gl~~v~ISl-------d~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv 162 (334)
T TIGR02666 102 ARHAKDLKEAGLKRVNVSL-------DSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVV 162 (334)
T ss_pred HHHHHHHHHcCCCeEEEec-------ccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 4678999999999998765 4444444455543446888899999999999997 8777765
No 220
>PRK11059 regulatory protein CsrD; Provisional
Probab=24.52 E-value=85 Score=38.08 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCCC---CCCCCCCCCccCCccCCCCCC--------HHHHHHHHHHHHHcCCEEEE
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPTE---SVSPEGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILG 494 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~e---s~s~hGYd~~Dy~~IDp~~Gt--------~edfk~LV~~aH~~GIkVIL 494 (802)
.++..+...+..|+++||.... -=+-. +..+-..-+.||-+||+.|-. ..-++.+++.||..||+||.
T Consensus 530 ~~~~~~~~~l~~L~~~G~~iai-ddfG~g~~s~~~L~~l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viA 608 (640)
T PRK11059 530 QHISRLRPVLRMLRGLGCRLAV-DQAGLTVVSTSYIKELNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFA 608 (640)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-ECCCCCcccHHHHHhCCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEE
Confidence 4677888899999999997543 21111 111222336788888876532 23489999999999999999
Q ss_pred EeccCcc
Q 003698 495 DVVLNHR 501 (802)
Q Consensus 495 D~V~NHt 501 (802)
.+|=+..
T Consensus 609 egVEt~~ 615 (640)
T PRK11059 609 TGVESRE 615 (640)
T ss_pred EEeCCHH
Confidence 9997754
No 221
>PRK08114 cystathionine beta-lyase; Provisional
Probab=24.42 E-value=76 Score=36.26 Aligned_cols=64 Identities=19% Similarity=0.180 Sum_probs=40.9
Q ss_pred HHHHhcCCCEEEeCCCCCCC----CCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcC--CEEEEEeccC
Q 003698 436 TELSSLGFSVIWLPPPTESV----SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG--MKILGDVVLN 499 (802)
Q Consensus 436 dYLk~LGvtaI~L~PI~es~----s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~G--IkVILD~V~N 499 (802)
..++..||+..++.|.-... -...-...=.-.+-...|...|++++++.||++| +.||+|-++-
T Consensus 120 ~~l~~~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a 189 (395)
T PRK08114 120 KILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWA 189 (395)
T ss_pred HHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCc
Confidence 46788999999987631100 0011111111222344667789999999999985 9999998873
No 222
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.31 E-value=1.5e+02 Score=31.29 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 003698 429 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 499 (802)
Q Consensus 429 ~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~N 499 (802)
.+..+-++.+++.|+++|-+. |-.+=+.++.+++++.+|++||++++=+-++
T Consensus 88 ~~~~~~i~~~~~~Gadgvii~-------------------dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~ 139 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLFP-------------------DLLIDYPDDLEKYVEIIKNKGLKPVFFTSPK 139 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEEC-------------------CCCCCcHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 367777888999999999872 1111124678899999999999999966554
No 223
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=24.28 E-value=67 Score=36.80 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=41.6
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCC----------CCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 003698 435 ATELSSLGFSVIWLPPPTESVSP----------EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 497 (802)
Q Consensus 435 LdYLk~LGvtaI~L~PI~es~s~----------hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V 497 (802)
+..-++.|+...|+..- +.... .+=...-+..+....|+..+++++++.||++|..|++|.+
T Consensus 129 ~~~~~~~Ga~v~~i~~~-~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaa 200 (405)
T COG0520 129 QELAKRTGAKVRVIPLD-DDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAA 200 (405)
T ss_pred HHHHHhcCcEEEEEecC-CCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECc
Confidence 33445568887777654 33210 0011122334456789999999999999999999999997
No 224
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=24.20 E-value=1.5e+02 Score=33.06 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=59.4
Q ss_pred cceeEEeeeeecCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCCCCC--------------------CCCCCC------C
Q 003698 409 GFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV--------------------SPEGYM------P 462 (802)
Q Consensus 409 ~y~~~~~~F~Wd~~~~GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~--------------------s~hGYd------~ 462 (802)
+.++.+|+.+ ....-|...-.+.+..|.+.|+.-|-+.=.-... .++... -
T Consensus 17 ~~PI~VQSMt---nt~T~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~g 93 (346)
T TIGR00612 17 DAPIVVQSMT---NTDTIDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIHFDYRLAALAMAKG 93 (346)
T ss_pred CCcEEEEecC---CCCchhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHhc
Confidence 4567888876 3346789999999999999999999885332211 111111 1
Q ss_pred ccCCccCC-CCCCHHHHHHHHHHHHHcCCEEEE
Q 003698 463 RDLYNLSS-RYGNIDELKDVVNKFHDVGMKILG 494 (802)
Q Consensus 463 ~Dy~~IDp-~~Gt~edfk~LV~~aH~~GIkVIL 494 (802)
.|=..|+| .+|..+-|+++|++|+++|+-|=+
T Consensus 94 ~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRI 126 (346)
T TIGR00612 94 VAKVRINPGNIGFRERVRDVVEKARDHGKAMRI 126 (346)
T ss_pred cCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEE
Confidence 33356666 789999999999999999987644
No 225
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=24.14 E-value=1.2e+02 Score=34.40 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 503 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~ 503 (802)
.++|..|+++|||-|.|..= -.+..-...+ .+.-+.++..+.++.|++.++.|-+|+++..-+.
T Consensus 111 ~e~l~~l~~~GvnRiSiGvQ-------S~~d~~L~~l-gR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgq 174 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGVQ-------SLKEDDLKKL-GRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQ 174 (390)
T ss_pred HHHHHHHHHCCCCEEEEECC-------cCCHHHHHHc-CCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCC
Confidence 48999999999999987641 1111111122 2445678888889999999999999999987554
No 226
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=23.95 E-value=1.8e+02 Score=31.20 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 003698 430 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 500 (802)
Q Consensus 430 GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NH 500 (802)
|+..-+..+++.|++.|-+... ..++..++++.|+++||..++=+.++.
T Consensus 103 G~e~f~~~~~~aGvdgviipDl----------------------p~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADL----------------------PLEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCC----------------------ChHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 6788888999999998876521 237889999999999999986555553
No 227
>PF10413 Rhodopsin_N: Amino terminal of the G-protein receptor rhodopsin; InterPro: IPR019477 Rhodopsin is the archetypal G-protein-coupled receptor. Such receptors participate in virtually all physiological processes as signalling molecules. They utilise heterotrimeric guanosine triphosphate (GTP)-binding proteins to transduce extracellular signals to intracellular events. Rhodopsin is important because of the pivotal role it plays in visual signal transduction. It is a dimeric transmembrane protein whose intradiskal surface consists of an N-terminal domain and three loops connecting six of the seven transmembrane helices. The N-terminal domain is a compact alpha-helical region with breaks and bends at proline residues outside the membrane []. This entry represents the N-terminal domain, while the transmembrane region is represented by (IPR000276 from INTERPRO). The N-terminal domain is extracellular is and is necessary for successful dimerisation and molecular stability []. ; PDB: 3PXO_A 4A4M_A 3OAX_A 2J4Y_A 2HPY_A 1F88_B 3PQR_A 1L9H_B 2I37_B 1GZM_B ....
Probab=23.91 E-value=38 Score=24.71 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=10.8
Q ss_pred CCCceeEeCCCCCC
Q 003698 291 MENDFYIPLTSSSC 304 (802)
Q Consensus 291 ~g~df~v~~~~~~~ 304 (802)
.|.|||||++-...
T Consensus 4 eG~~FYiPmsN~TG 17 (36)
T PF10413_consen 4 EGPNFYIPMSNRTG 17 (36)
T ss_dssp EESSEEESSTGTTS
T ss_pred CCCceeEeeccccc
Confidence 38999999976544
No 228
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=23.89 E-value=1.8e+02 Score=32.62 Aligned_cols=59 Identities=19% Similarity=0.081 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 003698 427 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 502 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~ 502 (802)
|+..+.+.+. + .+.+|.+.|++... |.. .-+.+.+++|.+-|+++|+-||.|-|....+
T Consensus 164 d~~~l~~~l~---~-~~~avivep~~~~~---G~~----------~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g 222 (389)
T PRK01278 164 DIEALKAAIT---P-NTAAILIEPIQGEG---GIR----------PAPDEFLKGLRQLCDENGLLLIFDEVQCGMG 222 (389)
T ss_pred CHHHHHHhhC---C-CeEEEEEecccCCC---CCc----------CCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 5666655553 2 57899999984322 211 1135789999999999999999999986443
No 229
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=23.80 E-value=1.5e+02 Score=29.15 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcC-CEEEEEeccCcc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG-MKILGDVVLNHR 501 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~G-IkVILD~V~NHt 501 (802)
.+.++.|+++|++.|.++.=.-... -| ..+.+ -++.+++.+.++.+++.| +.|.+.+++++.
T Consensus 100 ~~~~~~l~~~~~~~i~isl~~~~~~--~~-----~~~~~-~~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~ 162 (216)
T smart00729 100 EELLEALKEAGVNRVSLGVQSGSDE--VL-----KAINR-GHTVEDVLEAVEKLREAGPIKVSTDLIVGLP 162 (216)
T ss_pred HHHHHHHHHcCCCeEEEecccCCHH--HH-----HHhcC-CCCHHHHHHHHHHHHHhCCcceEEeEEecCC
Confidence 5778899999999898866322221 11 11222 245699999999999999 899988888764
No 230
>PRK09936 hypothetical protein; Provisional
Probab=23.67 E-value=1.8e+02 Score=31.79 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHH-HHHHHHHHHHHcCCEEEEEeccC
Q 003698 428 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNID-ELKDVVNKFHDVGMKILGDVVLN 499 (802)
Q Consensus 428 l~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~e-dfk~LV~~aH~~GIkVILD~V~N 499 (802)
-..-.+.+.-++.+|+++|.+- .-+| -|+.||+.+ -|..++++|++.||+|++=+-++
T Consensus 37 ~~qWq~~~~~~~~~G~~tLivQ-------Wt~y-------G~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 37 DTQWQGLWSQLRLQGFDTLVVQ-------WTRY-------GDADFGGQRGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred HHHHHHHHHHHHHcCCcEEEEE-------eeec-------cCCCcccchHHHHHHHHHHHHcCCEEEEcccCC
Confidence 3455777888999999999863 1233 233677754 69999999999999999987775
No 231
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=23.66 E-value=1.3e+02 Score=33.84 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCcccc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 503 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIk-VILD~V~NHt~~ 503 (802)
.+.|..|+++|++.|.|.- ++.+ ..-+..+ .+-.+.++..+-++.+++.|+. |-+|+.+..-+.
T Consensus 99 ~e~l~~l~~~G~~rvsiGv--qS~~-----d~~L~~l-~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgq 163 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGL--QAWQ-----NSLLKYL-GRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQ 163 (374)
T ss_pred HHHHHHHHHcCCCEEEEEC--ccCC-----HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Confidence 5789999999999998765 2211 1111222 2344788999999999999997 779999875443
No 232
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=23.63 E-value=6.6e+02 Score=27.96 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=67.1
Q ss_pred HHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccccCCCCCCCC
Q 003698 433 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVW 512 (802)
Q Consensus 433 ~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~~~g~~ 512 (802)
+.|+...+.|++.|-+.= +....+..++.|+.|+++|+.|..-+..-|+..
T Consensus 91 ~dl~~a~~~gvd~iri~~--------------------~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~--------- 141 (333)
T TIGR03217 91 HDLKAAYDAGARTVRVAT--------------------HCTEADVSEQHIGMARELGMDTVGFLMMSHMTP--------- 141 (333)
T ss_pred HHHHHHHHCCCCEEEEEe--------------------ccchHHHHHHHHHHHHHcCCeEEEEEEcccCCC---------
Confidence 446667788999887521 111124688999999999999887665443210
Q ss_pred ccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEe-cccccccchhH
Q 003698 513 NIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGYV 591 (802)
Q Consensus 513 ~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRl-D~a~~~~~~f~ 591 (802)
.+++.+.++... ++|+|.+++ |.+..+.+.-.
T Consensus 142 ----------------------------------------------~e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P~~v 174 (333)
T TIGR03217 142 ----------------------------------------------PEKLAEQAKLME-SYGADCVYIVDSAGAMLPDDV 174 (333)
T ss_pred ----------------------------------------------HHHHHHHHHHHH-hcCCCEEEEccCCCCCCHHHH
Confidence 256777777665 899999998 88887777655
Q ss_pred HHHHHh----cCCcEEEEeecCC
Q 003698 592 KDYLEA----TEPYFAVGEYWDS 610 (802)
Q Consensus 592 ~~~~~~----~~p~~liGE~w~~ 610 (802)
.++++. .+|+.-+|=+-++
T Consensus 175 ~~~v~~l~~~l~~~i~ig~H~Hn 197 (333)
T TIGR03217 175 RDRVRALKAVLKPETQVGFHAHH 197 (333)
T ss_pred HHHHHHHHHhCCCCceEEEEeCC
Confidence 554443 3444555555444
No 233
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.58 E-value=1.8e+02 Score=26.75 Aligned_cols=60 Identities=15% Similarity=0.033 Sum_probs=37.6
Q ss_pred HHHHHHhcC-CCEEEeCCCCCCC-CCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003698 434 KATELSSLG-FSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 494 (802)
Q Consensus 434 kLdYLk~LG-vtaI~L~PI~es~-s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVIL 494 (802)
--.+|..+| +.+....| .+.. ....-...|..-+=+.=|...+..+.++.|+++|.+||.
T Consensus 17 ~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 17 AKYLLERLAGIPVEVEAA-SEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred HHHHHHHhcCCceEEEeh-hHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEE
Confidence 334677776 77776552 2211 111123344333345668888999999999999999875
No 234
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=23.55 E-value=2.2e+02 Score=28.14 Aligned_cols=55 Identities=25% Similarity=0.331 Sum_probs=38.6
Q ss_pred HHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003698 436 TELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 494 (802)
Q Consensus 436 dYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVIL 494 (802)
..|..+|+++..+...... .-...|..-+=+.-|...++.++++.||++|++||.
T Consensus 50 ~~l~~~g~~~~~~~~~~~~----~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 50 MRLMHLGFNVYVVGETTTP----SIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred HHHHhCCCeEEEeCCcccC----CCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 3578899999988654311 122333333335568889999999999999999975
No 235
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=23.39 E-value=2.7e+02 Score=31.35 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 003698 433 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 499 (802)
Q Consensus 433 ~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~N 499 (802)
+.++.|++.|++.|.++= .|.+..-+..+-..-|+-+...+-++.+++.|++|.+-.|++
T Consensus 105 ~~~~~L~~~g~~~v~iSl-------dg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~ 164 (378)
T PRK05301 105 ARLAALKDAGLDHIQLSF-------QDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVIH 164 (378)
T ss_pred HHHHHHHHcCCCEEEEEe-------cCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEee
Confidence 567788999999988863 333322222333333567777778889999999988877764
No 236
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=23.05 E-value=1.2e+02 Score=37.09 Aligned_cols=59 Identities=8% Similarity=0.094 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCCCCCC--CCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 003698 429 MELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 498 (802)
Q Consensus 429 ~GI~~kLdYLk~LGvtaI~L~PI~es~--s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~ 498 (802)
..+.+.|.-+|.+|+|++-+..+.-+- ...| . ..|+. -|.. +++.|++.|++|||==.+
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG--~-------fdf~~-~D~~-~l~~a~~~Gl~vil~t~P 90 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEG--K-------FDFTW-LDEI-FLERAYKAGLYVILRTGP 90 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCcccc--c-------cCccc-chHH-HHHHHHhcCceEEEecCC
Confidence 568899999999999999988776443 1111 1 12332 3444 899999999999997655
No 237
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=22.95 E-value=3.8e+02 Score=29.64 Aligned_cols=120 Identities=16% Similarity=0.137 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHc--CCEEEEEeccCcccccC
Q 003698 428 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDV--GMKILGDVVLNHRCAHY 505 (802)
Q Consensus 428 l~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~--GIkVILD~V~NHt~~~~ 505 (802)
+..+.+.+..+.++||++|-|-|+-+.....|- .+.|| .--+.+-|+++++. .|-||-|+.+-....+.
T Consensus 60 id~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs-----~A~~~----~g~v~~air~iK~~~pdl~vi~DVcLc~YT~hG 130 (322)
T PRK13384 60 ESALADEIERLYALGIRYVMPFGISHHKDAKGS-----DTWDD----NGLLARMVRTIKAAVPEMMVIPDICFCEYTDHG 130 (322)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcc-----cccCC----CChHHHHHHHHHHHCCCeEEEeeeecccCCCCC
Confidence 778999999999999999999999433221111 11111 11244445555554 89999999986533221
Q ss_pred CCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEeccccc
Q 003698 506 QNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG 585 (802)
Q Consensus 506 ~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~ 585 (802)
. .|-. -+=...|.+..+.+.+...-.. +.|+|-. +...
T Consensus 131 H--cGil------------------------------------~~g~i~ND~Tl~~L~~~Als~A-~AGADiV---APSd 168 (322)
T PRK13384 131 H--CGVL------------------------------------HNDEVDNDATVENLVKQSVTAA-KAGADML---APSA 168 (322)
T ss_pred c--eeec------------------------------------cCCcCccHHHHHHHHHHHHHHH-HcCCCeE---eccc
Confidence 1 0000 0001346777888888877777 7888754 3345
Q ss_pred ccchhHHHHHHhc
Q 003698 586 FWGGYVKDYLEAT 598 (802)
Q Consensus 586 ~~~~f~~~~~~~~ 598 (802)
|...-+..+.+++
T Consensus 169 MMDGrV~aIR~aL 181 (322)
T PRK13384 169 MMDGQVKAIRQGL 181 (322)
T ss_pred ccccHHHHHHHHH
Confidence 6666556655554
No 238
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=22.88 E-value=1.8e+02 Score=32.00 Aligned_cols=60 Identities=17% Similarity=0.328 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCC-EEEEEecc
Q 003698 431 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVL 498 (802)
Q Consensus 431 I~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GI-kVILD~V~ 498 (802)
+.+.++.|++.|++.|.++- ++.++.-|..+... ++.+.+.+-++.|.+.|+ .|.+-.|+
T Consensus 107 l~~~~~~L~~agl~~i~ISl-------ds~~~e~~~~i~~~-~~~~~vl~~i~~~~~~g~~~v~i~~vv 167 (331)
T PRK00164 107 LARRAAALKDAGLDRVNVSL-------DSLDPERFKAITGR-DRLDQVLAGIDAALAAGLTPVKVNAVL 167 (331)
T ss_pred HHHHHHHHHHcCCCEEEEEe-------ccCCHHHhccCCCC-CCHHHHHHHHHHHHHCCCCcEEEEEEE
Confidence 35678899999999998765 44444445555544 678889999999999999 77777765
No 239
>PF09081 DUF1921: Domain of unknown function (DUF1921); InterPro: IPR015165 This domain, which is found in a set of prokaryotic amylases, has no known function []. ; PDB: 1QI5_A 1JDC_A 2AMG_A 1QPK_A 1JDD_A 1QI4_A 1JDA_A 1GCY_A 1QI3_A.
Probab=22.70 E-value=2.2e+02 Score=22.40 Aligned_cols=40 Identities=18% Similarity=0.351 Sum_probs=22.2
Q ss_pred EEEEE--CCEEEEEEeCCCCCCC-CCCCCeEEEEcC--CCeEEEe
Q 003698 761 YAAII--DEKVAMKLGPGHYEPP-SGSQNWSFVTEG--RDYKVWE 800 (802)
Q Consensus 761 ~a~~r--~~~~lvvinn~~~~~~-~~~~~~~~~~~g--~~~~vw~ 800 (802)
.+-.+ ..+++++++..-..|. ..++.|+.+++. ...+||+
T Consensus 7 v~t~~Gs~q~lv~AldSnlssP~qVasGsfs~a~N~dnG~vRiWr 51 (51)
T PF09081_consen 7 VATTSGSNQKLVFALDSNLSSPNQVASGSFSQAVNEDNGQVRIWR 51 (51)
T ss_dssp EEEEE-SS-EEEEEES-----GGGT-SS--EEEEEETTTTEEEEE
T ss_pred EEEEeccccEEEEEecCCCCCcccccccchHhhhhccCCcEEeeC
Confidence 34444 4677888877655552 557779999887 8889996
No 240
>PLN02905 beta-amylase
Probab=22.69 E-value=2.2e+02 Score=34.32 Aligned_cols=66 Identities=12% Similarity=0.085 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeC---CCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 003698 426 RWYMELKEKATELSSLGFSVIWLP---PPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 502 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~---PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~ 502 (802)
-+.+.+...|..||.+||++|-+- -|.|..+...|+- .-.++|++-+++.|+||..=+-|.-||
T Consensus 283 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdW-------------sgY~~L~~mvr~~GLKlqvVMSFHqCG 349 (702)
T PLN02905 283 ADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNW-------------NGYKRLFQMVRELKLKLQVVMSFHECG 349 (702)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCc-------------HHHHHHHHHHHHcCCeEEEEEEecccC
Confidence 357789999999999999999653 1333334344443 456888999999999999999998777
Q ss_pred cc
Q 003698 503 AH 504 (802)
Q Consensus 503 ~~ 504 (802)
..
T Consensus 350 GN 351 (702)
T PLN02905 350 GN 351 (702)
T ss_pred CC
Confidence 54
No 241
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=22.66 E-value=5.8e+02 Score=28.85 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccCccccc
Q 003698 475 IDELKDVVNKFHDVGMKILGDVVLNHRCAH 504 (802)
Q Consensus 475 ~edfk~LV~~aH~~GIkVILD~V~NHt~~~ 504 (802)
.+.|++++++.|+.|=++++=+ +|.|+.
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL--~H~Gr~ 109 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQL--WHAGRK 109 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEe--ccCccc
Confidence 5689999999999999999764 888854
No 242
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=22.55 E-value=2.2e+02 Score=29.86 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCCEEEeC
Q 003698 431 LKEKATELSSLGFSVIWLP 449 (802)
Q Consensus 431 I~~kLdYLk~LGvtaI~L~ 449 (802)
+.+.++-++++|++.|.|.
T Consensus 16 l~e~~~~~~e~G~~~vEl~ 34 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYL 34 (254)
T ss_pred HHHHHHHHHHcCCCEEEec
Confidence 5666777778888888875
No 243
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=22.51 E-value=76 Score=29.01 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCCCCC
Q 003698 431 LKEKATELSSLGFSVIWLPPPTESVSPE 458 (802)
Q Consensus 431 I~~kLdYLk~LGvtaI~L~PI~es~s~h 458 (802)
+.+.++.|...|++.|+|.|+|-..+.|
T Consensus 44 i~~~l~~l~~~G~~~i~lvPl~L~~G~H 71 (103)
T cd03413 44 LDDVLAKLKKAGIKKVTLMPLMLVAGDH 71 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEehhheeccc
Confidence 5677777899999999999999988765
No 244
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=22.48 E-value=1.6e+02 Score=32.89 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCCeeeEeC-Cch
Q 003698 705 MQGYAYILTHPGTPSVFY-DHI 725 (802)
Q Consensus 705 klA~allltlpGiP~IYy-GdE 725 (802)
...|-++...+|||.+|| |+|
T Consensus 74 Yr~YKlL~g~~GIP~vYYFGqe 95 (449)
T KOG1165|consen 74 YRTYKLLGGTEGIPQVYYFGQE 95 (449)
T ss_pred HHHHHHHcCCCCCCceeeeccc
Confidence 345667778899999998 654
No 245
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=22.42 E-value=21 Score=37.71 Aligned_cols=43 Identities=23% Similarity=0.485 Sum_probs=28.0
Q ss_pred cCCCCCe-------EEEeeeecCCCCCcccCCCCCCCCcce-ecccccccccc
Q 003698 211 TDLTGDV-------VVHWGVCRDDSKNWEIPAEPYPPETIV-FKNKALRTLLQ 255 (802)
Q Consensus 211 t~~~~~~-------~lHWgv~~~~~~~W~~pp~~~~p~~~~-~~~~a~~T~~~ 255 (802)
.+.|+++ +|||.||+.... +-|-++..|...+ -++.|+|+.-+
T Consensus 100 s~~~e~I~~PildGLLHWaVcpsa~A--~Dpfp~~~~~~~lSPqrlaLEaLcK 150 (257)
T PF12031_consen 100 SDYPESIARPILDGLLHWAVCPSAEA--QDPFPTAGPHSPLSPQRLALEALCK 150 (257)
T ss_pred ccCchHHHHHHHHHHHHHHhccchhc--cCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 6778866 799999997333 2343344444455 57778888544
No 246
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=22.32 E-value=2e+02 Score=30.38 Aligned_cols=53 Identities=8% Similarity=0.012 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003698 430 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 494 (802)
Q Consensus 430 GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVIL 494 (802)
++...++++.++|+++|.|...-. +.|. +..-+.++.++|-+.+.++||+|.+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~----~~~~--------~~~~~~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNP----RSWK--------GVRLSEETAEKFKEALKENNIDVSV 63 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCC----CCCC--------CCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 477899999999999999954322 1111 1134566788888888899999764
No 247
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=22.32 E-value=72 Score=37.94 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=42.7
Q ss_pred hhhhhhhccccccCCCcccccc-------cc------cC---CCCCCCCCCC-CCcceeEEeeeeecCCCCCCCHHHHHH
Q 003698 371 AAEAYSIFRTTAPTFFEEAAVE-------LE------ES---KPPAKISPGT-GTGFEILCQGFNWESHKSGRWYMELKE 433 (802)
Q Consensus 371 ~av~YqIf~drf~~~~~~~~~~-------~~------~~---~~~~~~~~~~-~~~y~~~~~~F~Wd~~~~GGdl~GI~~ 433 (802)
.+|+|||+++||.+++..+... .+ +. -.|- +.++. ..+|. +.+|. .-+..-|+.+.+.+
T Consensus 5 ~~viYqi~~~~f~d~~~~~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi-~~~~~~~~gY~--~~dy~-~vd~~~Gt~~df~~ 80 (539)
T TIGR02456 5 DAVFYEVHVRSFFDSNGDGIGDFPGLTSKLDYLKWLGVDALWLLPF-FQSPLRDDGYD--VSDYR-AILPEFGTIDDFKD 80 (539)
T ss_pred cceEEEEehhHhhcCCCCCccCHHHHHHhHHHHHHCCCCEEEECCC-cCCCCCCCCCC--ccccc-ccChhhCCHHHHHH
Confidence 3789999999999876432111 01 00 0010 11111 23333 23332 12223488899999
Q ss_pred HHHHHHhcCCCEEEeC
Q 003698 434 KATELSSLGFSVIWLP 449 (802)
Q Consensus 434 kLdYLk~LGvtaI~L~ 449 (802)
.++.+.+.||..|-=.
T Consensus 81 Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 81 FVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHHHCCCEEEEEe
Confidence 9999999999877533
No 248
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=22.14 E-value=3.7e+02 Score=27.85 Aligned_cols=103 Identities=14% Similarity=0.177 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCC-CCCCCCCCCCCCccCCccCCCCCC-----HHHHHHHHHHHHHcCCEEEEEeccCcc
Q 003698 428 YMELKEKATELSSLGFSVIWLPP-PTESVSPEGYMPRDLYNLSSRYGN-----IDELKDVVNKFHDVGMKILGDVVLNHR 501 (802)
Q Consensus 428 l~GI~~kLdYLk~LGvtaI~L~P-I~es~s~hGYd~~Dy~~IDp~~Gt-----~edfk~LV~~aH~~GIkVILD~V~NHt 501 (802)
...+...+.-+++.|++.|.+.= +.+ ..+.-.++. .+.++++++.|+++|++| .+.+-+.
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~------------~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v--~~~~~~~ 131 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSD------------LHIRKNLNKSREEALERIEEAVKYAKELGYEV--AFGCEDA 131 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSH------------HHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE--EEEETTT
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccH------------HHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce--EeCcccc
Confidence 45555557777889999887631 111 111122332 567889999999999999 1111111
Q ss_pred cccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCChHHHHHHHHHHHHHHhhcCCceEEe-
Q 003698 502 CAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL- 580 (802)
Q Consensus 502 ~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~np~Vr~~i~~~l~~Wi~e~GIDGfRl- 580 (802)
+.. + .+++.+.++... ++|+|.+++
T Consensus 132 ~~~--------------------------------------------------~---~~~~~~~~~~~~-~~g~~~i~l~ 157 (237)
T PF00682_consen 132 SRT--------------------------------------------------D---PEELLELAEALA-EAGADIIYLA 157 (237)
T ss_dssp GGS--------------------------------------------------S---HHHHHHHHHHHH-HHT-SEEEEE
T ss_pred ccc--------------------------------------------------c---HHHHHHHHHHHH-HcCCeEEEee
Confidence 100 0 356777777776 789999998
Q ss_pred cccccccchhHHHHHHhc
Q 003698 581 DFVRGFWGGYVKDYLEAT 598 (802)
Q Consensus 581 D~a~~~~~~f~~~~~~~~ 598 (802)
|.+..+.+.-+.++++.+
T Consensus 158 Dt~G~~~P~~v~~lv~~~ 175 (237)
T PF00682_consen 158 DTVGIMTPEDVAELVRAL 175 (237)
T ss_dssp ETTS-S-HHHHHHHHHHH
T ss_pred CccCCcCHHHHHHHHHHH
Confidence 788777776665555443
No 249
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=22.01 E-value=3e+02 Score=30.00 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccCcccccCCCCCCCCccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCC
Q 003698 475 IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHS 554 (802)
Q Consensus 475 ~edfk~LV~~aH~~GIkVILD~V~NHt~~~~~~~~g~~~~f~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~ 554 (802)
.+++.+-|..|+++||+|.-=++++- ++
T Consensus 167 ~~~y~dav~r~rkrgIkvc~HiI~GL-------------------Pg--------------------------------- 194 (312)
T COG1242 167 FACYVDAVKRLRKRGIKVCTHLINGL-------------------PG--------------------------------- 194 (312)
T ss_pred hHHHHHHHHHHHHcCCeEEEEEeeCC-------------------CC---------------------------------
Confidence 34678899999999999986555431 11
Q ss_pred ChHHHHHHHHHHHHHHhhcCCceEEecccc
Q 003698 555 QDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 584 (802)
Q Consensus 555 np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~ 584 (802)
+-++++++.++... ..||||..+---+
T Consensus 195 --E~~~~mleTak~v~-~~~v~GIKlH~Lh 221 (312)
T COG1242 195 --ETRDEMLETAKIVA-ELGVDGIKLHPLH 221 (312)
T ss_pred --CCHHHHHHHHHHHH-hcCCceEEEEEEE
Confidence 12678889998776 8999999986543
No 250
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=21.91 E-value=74 Score=39.26 Aligned_cols=76 Identities=9% Similarity=0.108 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCCCCC---CCCCCCCccCCccCCCCCC--------HHHHHHHHHHHHHcCCEEEE
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILG 494 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~es~---s~hGYd~~Dy~~IDp~~Gt--------~edfk~LV~~aH~~GIkVIL 494 (802)
-++..+...|..|+++||..-. -=+-... ++-.--+.||-+||..|-. ..-++.|+.-||+.||+||.
T Consensus 675 ~~~~~~~~~l~~l~~~G~~i~l-d~fg~~~~~~~~l~~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~via 753 (799)
T PRK11359 675 EHDTEIFKRIQILRDMGVGLSV-DDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVA 753 (799)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-ECCCCchhhHHHHhhCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEEE
Confidence 4577888999999999997543 2111111 1111224788899987732 23489999999999999999
Q ss_pred EeccCccc
Q 003698 495 DVVLNHRC 502 (802)
Q Consensus 495 D~V~NHt~ 502 (802)
++|=+..-
T Consensus 754 ~gVe~~~~ 761 (799)
T PRK11359 754 EGVETKEQ 761 (799)
T ss_pred EcCCCHHH
Confidence 99987643
No 251
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=21.80 E-value=7.8e+02 Score=27.18 Aligned_cols=70 Identities=21% Similarity=0.156 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccccC
Q 003698 431 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 505 (802)
Q Consensus 431 I~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~~~ 505 (802)
.+......++=|+..|..-..+-++...+| +... .+.. =.-.+.|++|++++|+.|-++++=+ +|.|...
T Consensus 35 ~~~~y~~rA~gg~glii~~~~~v~~~~~~~-~~~~-~~~~-d~~~~~~~~l~~~vh~~G~~~~~QL--~H~G~~~ 104 (336)
T cd02932 35 HLVHYGSRALGGAGLVIVEATAVSPEGRIT-PGDL-GLWN-DEQIEALKRIVDFIHSQGAKIGIQL--AHAGRKA 104 (336)
T ss_pred HHHHHHHHHcCCCcEEEEcceEECCCcCCC-CCce-eecC-HHHHHHHHHHHHHHHhcCCcEEEEc--cCCCcCC
Confidence 333334444557888866655544432221 1100 0100 0125689999999999999998765 6877643
No 252
>PRK09776 putative diguanylate cyclase; Provisional
Probab=21.79 E-value=1.1e+02 Score=39.35 Aligned_cols=70 Identities=16% Similarity=0.101 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCC--------CccCCccCCCCC--------CHHHHHHHHHHHHHcC
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYM--------PRDLYNLSSRYG--------NIDELKDVVNKFHDVG 489 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd--------~~Dy~~IDp~~G--------t~edfk~LV~~aH~~G 489 (802)
-+...+.+.+..|+++||..- |-=+- .||. +.||-+||..|= ...-++.+++.||+.|
T Consensus 971 ~~~~~~~~~~~~l~~~G~~~~-lddfg-----~g~~~~~~l~~~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 1044 (1092)
T PRK09776 971 NHAESASRLVQKLRLAGCRVV-LSDFG-----RGLSSFNYLKAFMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLG 1044 (1092)
T ss_pred cCHHHHHHHHHHHHHCCcEEE-EcCCC-----CCchHHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcC
Confidence 457778889999999999643 22111 2333 688889996662 2345888999999999
Q ss_pred CEEEEEeccCcc
Q 003698 490 MKILGDVVLNHR 501 (802)
Q Consensus 490 IkVILD~V~NHt 501 (802)
++||..+|=+..
T Consensus 1045 ~~~iaegVEt~~ 1056 (1092)
T PRK09776 1045 MKTIAGPVELPL 1056 (1092)
T ss_pred CcEEecccCCHH
Confidence 999999986643
No 253
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=21.66 E-value=2e+02 Score=29.62 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003698 425 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 494 (802)
Q Consensus 425 GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVIL 494 (802)
.++-...++.|+.+.+.|+++|-+.|+.... +..++++|.+.||+||+
T Consensus 38 ~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~----------------------~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 38 QNDPEEQIEQIEQAISQGVDGIIVSPVDPDS----------------------LAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp TTTHHHHHHHHHHHHHTTESEEEEESSSTTT----------------------THHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCEEEecCCCHHH----------------------HHHHHHHHhhcCceEEE
Confidence 5778889999999999999999998865432 45788999999999998
No 254
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=21.66 E-value=3.2e+02 Score=30.07 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 003698 425 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 499 (802)
Q Consensus 425 GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~N 499 (802)
|=+-+.+++.|+.|+++|++.|-+.+-+.... ..+.+. +|=++++|+.+-+.|-+.|++-+.-+.+=
T Consensus 218 GETeee~~etl~~Lrelg~d~v~igqYl~p~~-~~~~v~-------~~~~p~~f~~~~~~a~~~gf~~v~~~p~v 284 (302)
T TIGR00510 218 GETNEEIKQTLKDLRDHGVTMVTLGQYLRPSR-RHLPVK-------RYVSPEEFDYYRSVALEMGFLHAACGPFV 284 (302)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeecccCCCC-CCCccc-------cCCCHHHHHHHHHHHHHcCChheEecccc
Confidence 56789999999999999999999888665433 223333 55688999999999999998766655543
No 255
>PLN00197 beta-amylase; Provisional
Probab=21.42 E-value=2.4e+02 Score=33.53 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeC---CCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 003698 427 WYMELKEKATELSSLGFSVIWLP---PPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 503 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~---PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~ 503 (802)
+-+.+...|..||.+||++|-+- -|.|..+...|+- .-.++|++-+.+.|+||..=+-|.-||.
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdW-------------sgY~~L~~mvr~~GLKlq~VmSFHqCGG 191 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNW-------------GGYNELLEMAKRHGLKVQAVMSFHQCGG 191 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCc-------------HHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 45679999999999999999653 2333334444543 3568888999999999999999987775
Q ss_pred c
Q 003698 504 H 504 (802)
Q Consensus 504 ~ 504 (802)
.
T Consensus 192 N 192 (573)
T PLN00197 192 N 192 (573)
T ss_pred C
Confidence 3
No 256
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=21.35 E-value=73 Score=33.36 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCC-CHHHHHHHHHHHHHcCCEEEEEeccCc
Q 003698 432 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYG-NIDELKDVVNKFHDVGMKILGDVVLNH 500 (802)
Q Consensus 432 ~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~G-t~edfk~LV~~aH~~GIkVILD~V~NH 500 (802)
........++|.++|=++.-+.... ...+. ..+++++++++||+.||+||+...+..
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~------------~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~ 136 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALG------------SGNEDEVIEEIAAVVEECHKYGLKVILEPYLRG 136 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHH------------TTHHHHHHHHHHHHHHHHHTSEEEEEEEECECH
T ss_pred HHHHHHHHHcCCceeeeeccccccc------------cccHHHHHHHHHHHHHHHhcCCcEEEEEEecCc
Confidence 5667788899999998765431110 00000 246899999999999999999977754
No 257
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=21.32 E-value=77 Score=20.89 Aligned_cols=17 Identities=47% Similarity=0.534 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhcCCC
Q 003698 428 YMELKEKATELSSLGFS 444 (802)
Q Consensus 428 l~GI~~kLdYLk~LGvt 444 (802)
-+-|..+++||+++|++
T Consensus 15 ~~~l~~~~~~l~~~g~~ 31 (31)
T smart00733 15 EKKLKPKVEFLKELGFS 31 (31)
T ss_pred HHHhhHHHHHHHHcCCC
Confidence 56788999999999985
No 258
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=21.24 E-value=2.7e+02 Score=25.64 Aligned_cols=67 Identities=19% Similarity=0.064 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHh-cCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003698 425 GRWYMELKEKATELSS-LGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 494 (802)
Q Consensus 425 GGdl~GI~~kLdYLk~-LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVIL 494 (802)
|+........-.++.. +|+..+...+.... . .-...|..-+=+.-|...+..+.++.|+++|++||.
T Consensus 8 G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~-~--~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 8 GGSGIGGDLLESLLLDEAKIPVYVVKDYTLP-A--FVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVA 75 (119)
T ss_pred CHHHHHHHHHHHHHHhccCCCEEEecCccCc-C--CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
Confidence 3333333333345666 48988887652211 1 112233333446778899999999999999999974
No 259
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=21.01 E-value=1.8e+02 Score=32.86 Aligned_cols=32 Identities=9% Similarity=0.148 Sum_probs=27.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 003698 467 NLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 498 (802)
Q Consensus 467 ~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~ 498 (802)
.+....|...+++++++.||++|+.|++|.+-
T Consensus 150 ~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~ 181 (402)
T TIGR02006 150 HVNNEIGVIQDIAAIGEICRERKVFFHVDAAQ 181 (402)
T ss_pred CCCcCceecccHHHHHHHHHHcCCEEEEEcch
Confidence 33445788889999999999999999999985
No 260
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=21.01 E-value=2.1e+02 Score=30.07 Aligned_cols=46 Identities=26% Similarity=0.447 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003698 431 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 494 (802)
Q Consensus 431 I~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVIL 494 (802)
+.+-|.|.++|||++|.++- |.-+. +.++.++||+.|-+.|..|.-
T Consensus 92 vdeyl~e~~~lGfe~iEIS~--------G~i~m----------~~eek~~lIe~a~d~Gf~vls 137 (258)
T COG1809 92 VDEYLNEAKELGFEAIEISN--------GTIPM----------STEEKCRLIERAVDEGFMVLS 137 (258)
T ss_pred HHHHHHHHHHcCccEEEecC--------Ceeec----------chHHHHHHHHHHHhcccEEeh
Confidence 56678899999999998862 22222 468899999999999998764
No 261
>PRK10551 phage resistance protein; Provisional
Probab=20.96 E-value=1.7e+02 Score=34.73 Aligned_cols=70 Identities=14% Similarity=0.075 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCCEEEeCCCCCCC---CCCCCCCccCCccCCCC----CCH----HHHHHHHHHHHHcCCEEEEEecc
Q 003698 430 ELKEKATELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRY----GNI----DELKDVVNKFHDVGMKILGDVVL 498 (802)
Q Consensus 430 GI~~kLdYLk~LGvtaI~L~PI~es~---s~hGYd~~Dy~~IDp~~----Gt~----edfk~LV~~aH~~GIkVILD~V~ 498 (802)
...+.+..|+++||.... -=+-... ++-.--+.||-+||..| ++. .-++.+++-||+.|++||.++|=
T Consensus 398 ~~~~~l~~Lr~~G~~ial-DDFGtg~ssl~~L~~l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAEGVE 476 (518)
T PRK10551 398 EATKLFAWLHSQGIEIAI-DDFGTGHSALIYLERFTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEGVE 476 (518)
T ss_pred HHHHHHHHHHHCCCEEEE-ECCCCCchhHHHHHhCCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 456788899999996442 1110000 11112257888898544 432 36889999999999999999997
Q ss_pred Cc
Q 003698 499 NH 500 (802)
Q Consensus 499 NH 500 (802)
+.
T Consensus 477 t~ 478 (518)
T PRK10551 477 TP 478 (518)
T ss_pred cH
Confidence 64
No 262
>PRK05967 cystathionine beta-lyase; Provisional
Probab=20.80 E-value=1.1e+02 Score=34.91 Aligned_cols=29 Identities=10% Similarity=0.166 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 003698 472 YGNIDELKDVVNKFHDVGMKILGDVVLNH 500 (802)
Q Consensus 472 ~Gt~edfk~LV~~aH~~GIkVILD~V~NH 500 (802)
.++..+++++++.||++|+-||+|-++..
T Consensus 162 ~l~v~dl~~I~~la~~~g~~vvVD~t~a~ 190 (395)
T PRK05967 162 TFEMQDIPAIAEAAHRHGAIVMMDNTWAT 190 (395)
T ss_pred CCcHHHHHHHHHHHHHhCCEEEEECCccC
Confidence 67999999999999999999999999853
No 263
>PLN02161 beta-amylase
Probab=20.70 E-value=2.7e+02 Score=32.78 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeC---CCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 003698 427 WYMELKEKATELSSLGFSVIWLP---PPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 503 (802)
Q Consensus 427 dl~GI~~kLdYLk~LGvtaI~L~---PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~ 503 (802)
+.+.+...|..||.+||++|-+- -|.|..+...|+- .-.++|++-+++.|+||..=+-|.-++.
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW-------------sgY~~l~~mvr~~GLKlq~vmSFHqCGG 181 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKW-------------SLYEELFRLISEAGLKLHVALCFHSNMH 181 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCc-------------HHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 56789999999999999999653 2333334444443 3468888999999999999999987664
Q ss_pred c
Q 003698 504 H 504 (802)
Q Consensus 504 ~ 504 (802)
.
T Consensus 182 N 182 (531)
T PLN02161 182 L 182 (531)
T ss_pred C
Confidence 3
No 264
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=20.69 E-value=1.5e+02 Score=35.88 Aligned_cols=75 Identities=12% Similarity=0.065 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCCCCC---CCCCC---CCccCCccCCCC-----CCHHHHHHHHHHHHHcCCEEEE
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPTESV---SPEGY---MPRDLYNLSSRY-----GNIDELKDVVNKFHDVGMKILG 494 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~es~---s~hGY---d~~Dy~~IDp~~-----Gt~edfk~LV~~aH~~GIkVIL 494 (802)
.++..+...+..|+++||.. .|-=+-... .+-.. -+.||-+||..| +...-++.++.-||..||+||.
T Consensus 536 ~~~~~~~~~~~~l~~~G~~i-alDdfG~g~ss~~~L~~~~~l~~d~iKid~~~~~~~~~~~~~~~~i~~~a~~l~~~via 614 (660)
T PRK11829 536 QDLDEALRLLRELQGLGLLI-ALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVMA 614 (660)
T ss_pred cCHHHHHHHHHHHHhCCCEE-EEECCCCchhhHHHHhccCCCCCcEEEECHHHHhcccCCHHHHHHHHHHHHHcCCeEEE
Confidence 56778889999999999974 332221111 12223 567888888644 3345678888899999999999
Q ss_pred EeccCcc
Q 003698 495 DVVLNHR 501 (802)
Q Consensus 495 D~V~NHt 501 (802)
.+|=+..
T Consensus 615 egVEt~~ 621 (660)
T PRK11829 615 EGVETEE 621 (660)
T ss_pred ecCCCHH
Confidence 9997653
No 265
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=20.58 E-value=1.9e+02 Score=31.83 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHhcCC--CEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 003698 425 GRWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 502 (802)
Q Consensus 425 GGdl~GI~~kLdYLk~LGv--taI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~ 502 (802)
+-|+..+.+.|+..+.-++ ..|++..+. + +....=+.+++++|++.|.++|+-||.|-++.-..
T Consensus 129 ~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~-n-------------PtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~ 194 (363)
T PF00155_consen 129 HLDPEALEEALDELPSKGPRPKAVLICNPN-N-------------PTGSVLSLEELRELAELAREYNIIIIVDEAYSDLI 194 (363)
T ss_dssp EETHHHHHHHHHTSHTTTETEEEEEEESSB-T-------------TTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGB
T ss_pred cccccccccccccccccccccceeeecccc-c-------------ccccccccccccchhhhhcccccceeeeeceeccc
Confidence 4689999999998887765 666664332 1 22222268999999999999999999999997655
Q ss_pred c
Q 003698 503 A 503 (802)
Q Consensus 503 ~ 503 (802)
.
T Consensus 195 ~ 195 (363)
T PF00155_consen 195 F 195 (363)
T ss_dssp S
T ss_pred c
Confidence 4
No 266
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=20.51 E-value=85 Score=35.75 Aligned_cols=78 Identities=17% Similarity=0.123 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCCCCC--------------------C--CCCCCCccCCccCCC------------
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPTESV--------------------S--PEGYMPRDLYNLSSR------------ 471 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~es~--------------------s--~hGYd~~Dy~~IDp~------------ 471 (802)
|-.++|...+--|=+-|.+.|-+=|.|.+- . +..=.+.|+..++..
T Consensus 101 GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~nt 180 (420)
T KOG0257|consen 101 GANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNT 180 (420)
T ss_pred CchHHHHHHHHHHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeC
Confidence 556777777777777788888888877653 0 122233444444322
Q ss_pred -------CCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 003698 472 -------YGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 503 (802)
Q Consensus 472 -------~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~~ 503 (802)
.=+.++|+++++-|.++|.=||-|=|+.|...
T Consensus 181 PhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~ 219 (420)
T KOG0257|consen 181 PHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVY 219 (420)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhh
Confidence 22578999999999999999999999998653
No 267
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=20.40 E-value=2.1e+02 Score=32.48 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEeCCCCCCC----CCCCCCCc------------cCCc--------------cCCC--C
Q 003698 425 GRWYMELKEKATELSSLGFSVIWLPPPTESV----SPEGYMPR------------DLYN--------------LSSR--Y 472 (802)
Q Consensus 425 GGdl~GI~~kLdYLk~LGvtaI~L~PI~es~----s~hGYd~~------------Dy~~--------------IDp~--~ 472 (802)
.|=-++|.=.++-|+.-|-|.+.--|=|..- .++|-.++ |+-. ++|. -
T Consensus 133 sGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPc 212 (447)
T KOG0259|consen 133 SGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPC 212 (447)
T ss_pred ccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCC
Confidence 4667899999999999999988777766532 23332222 1111 1121 2
Q ss_pred C---CHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 003698 473 G---NIDELKDVVNKFHDVGMKILGDVVLNHRCA 503 (802)
Q Consensus 473 G---t~edfk~LV~~aH~~GIkVILD~V~NHt~~ 503 (802)
| +.+-|+++.+-||+.||-||-|=|+.|+.-
T Consensus 213 GnVys~~HL~kiae~A~klgi~vIaDEVY~~~vf 246 (447)
T KOG0259|consen 213 GNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVF 246 (447)
T ss_pred cccccHHHHHHHHHHHHHhCCeEEehhhcceeec
Confidence 2 468899999999999999999999999874
No 268
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=20.39 E-value=2.6e+02 Score=27.59 Aligned_cols=59 Identities=14% Similarity=0.015 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHH---cCCEEEEEeccCcc
Q 003698 428 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD---VGMKILGDVVLNHR 501 (802)
Q Consensus 428 l~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~---~GIkVILD~V~NHt 501 (802)
.+..++...+.+++|+++|-+.|.+-. ..+ ++.+.+.+.++++.+ .++-||+...+.++
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~------------~~~---~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~ 125 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGS------------LKE---GDWEEVLEEIAAVVEAADGGLPLKVILETRGL 125 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHH------------HhC---CCHHHHHHHHHHHHHHhcCCceEEEEEECCCC
Confidence 788999999999999999999876521 111 134444444444433 59999998887654
No 269
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=20.29 E-value=1.9e+02 Score=31.85 Aligned_cols=30 Identities=10% Similarity=0.231 Sum_probs=25.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 003698 468 LSSRYGNIDELKDVVNKFHDVGMKILGDVV 497 (802)
Q Consensus 468 IDp~~Gt~edfk~LV~~aH~~GIkVILD~V 497 (802)
+....|...+++++++.||++|+.||+|.+
T Consensus 147 ~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a 176 (353)
T TIGR03235 147 VNNETGSIQPIREIAEVLEAHEAFFHVDAA 176 (353)
T ss_pred ccCCceeccCHHHHHHHHHHcCCEEEEEch
Confidence 344567778899999999999999999998
No 270
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=20.26 E-value=1.6e+02 Score=33.41 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 003698 433 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 502 (802)
Q Consensus 433 ~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~NHt~ 502 (802)
++|..|+++|||.|.|--=. .+..-...++ +--+.++..+.++.+++.++.|-+|++++--+
T Consensus 105 e~L~~l~~~GvnrislGvQS-------~~d~vL~~l~-R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPg 166 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLGVQA-------LNDADLRFLG-RLHSVAEALAAIDLAREIFPRVSFDLIYARPG 166 (380)
T ss_pred HHHHHHHHcCCCEEEEeccc-------CCHHHHHHcC-CCCCHHHHHHHHHHHHHhCccEEEEeecCCCC
Confidence 89999999999999875311 1111111222 33477888899999999999999999998544
No 271
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=20.22 E-value=3.7e+02 Score=29.64 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCCCCCccCCccCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 003698 426 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 499 (802)
Q Consensus 426 Gdl~GI~~kLdYLk~LGvtaI~L~PI~es~s~hGYd~~Dy~~IDp~~Gt~edfk~LV~~aH~~GIkVILD~V~N 499 (802)
-++.-+.+-..-|+++|||+|-|+=+-.+. ..+-+. -.+.+++|.+.+...||||.|-+-|.
T Consensus 54 ~~~~R~~~YARllASiGINgvvlNNVNa~~----------~~Lt~~--~l~~v~~lAdvfRpYGIkv~LSvnFa 115 (328)
T PF07488_consen 54 RDLTRYRDYARLLASIGINGVVLNNVNANP----------KLLTPE--YLDKVARLADVFRPYGIKVYLSVNFA 115 (328)
T ss_dssp S--HHHHHHHHHHHHTT--EEE-S-SS--C----------GGGSTT--THHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred cchhHHHHHHHHHhhcCCceEEecccccCh----------hhcCHH--HHHHHHHHHHHHhhcCCEEEEEeecc
Confidence 467778888888999999999988766544 122221 26789999999999999999988663
No 272
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=20.17 E-value=1.7e+02 Score=31.98 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 003698 472 YGNIDELKDVVNKFHDVGMKILGDVVLNH 500 (802)
Q Consensus 472 ~Gt~edfk~LV~~aH~~GIkVILD~V~NH 500 (802)
.|..++++++++-||++|+.|++|.+...
T Consensus 161 tG~~~~~~~i~~~~~~~~~~l~vD~a~~~ 189 (345)
T cd06450 161 TGAIDPLEEIADLAEKYDLWLHVDAAYGG 189 (345)
T ss_pred CCCCCCHHHHHHHHHHhCCeEEEechhhH
Confidence 46667899999999999999999999654
Done!