BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003699
(802 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B
Length = 853
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/769 (46%), Positives = 485/769 (63%), Gaps = 16/769 (2%)
Query: 40 YESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL-DGPRNGPVNITCGSWVQSKHVNKQK 98
Y+++F+ FG GA ++N E YL ++L D P +G ++ C SWV + K
Sbjct: 95 YDAQFDWDSDFGIPGAFYIKNYMQNEFYLKSLILEDIPNHGTIHFICNSWVYNSKHYKTD 154
Query: 99 RIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSE 158
RIFF N +YLPS+TP L + R EEL N+RGDG GERK DRIYDYDVYNDLG PD +
Sbjct: 155 RIFFANNTYLPSETPAPLVKYREEELKNVRGDGTGERKEWDRIYDYDVYNDLGDPDKGEK 214
Query: 159 LARPVLGGKEHPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQLQFSAKTLYS 218
ARPVLGG PYPRR RTGR DP SE Y+PRDEAF +K F A + S
Sbjct: 215 YARPVLGGSALPYPRRGRTGRGKTRKDPNSEKPGDFVYLPRDEAFGHLKSSDFLAYGIKS 274
Query: 219 VLHGLVPSLETAIIDT--DLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPRLVKG 276
V ++P L A L F F + KL+ GV +P F T +P + +
Sbjct: 275 VAQDVLPVLTDAFDGNLLSLDFDNFAEVRKLYEGGVT--LPTNFLSNI---TPIPIIKEL 329
Query: 277 IEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIY 336
G++ L++ P+ M DK W DEEF R+T+AGLNP I+++ E+PL S LD + Y
Sbjct: 330 FRTDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEEFPLSSKLDTQAY 389
Query: 337 GPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRT 396
G ITKE +E +GG +TVE+AI+ KKLFILD+HD L+PY+ K+ T Y +RT
Sbjct: 390 GDHTCIITKEHLEPNLGG-LTVEQAIQNKKLFILDHHDYLIPYLRKINA-NTTKTYATRT 447
Query: 397 LFFSYPSGTLRPLAIELTRPPMDGKPQW--KQVFTPSWHSTECWLWRLAKAHVLAHDSGY 454
+FF GTL PLAIEL++P G+ +V+ PS E ++W LAKA+V+ +D+ Y
Sbjct: 448 IFFLKNDGTLTPLAIELSKPHPQGEEYGPVSEVYVPSSEGVEAYIWLLAKAYVVVNDACY 507
Query: 455 HQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGII 514
HQ++SHWL TH EP++IATNR LS +HPI +LL PH+R TM IN+LAR++LVNA GII
Sbjct: 508 HQIISHWLNTHAVVEPFVIATNRHLSVVHPIYKLLFPHYRDTMNINSLARKSLVNADGII 567
Query: 515 ESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPFAK 574
E TF G+YS+E+S+V Y K W F +ALP DL+ RG+AV+DPSAP G++L IEDYP+A
Sbjct: 568 EKTFLWGRYSLEMSAVIY-KDWVFTDQALPNDLVKRGVAVKDPSAPHGVRLLIEDYPYAS 626
Query: 575 DGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTP 634
DGL++WDA+K WV ++V+ YY + ++ D EL++WW E+ VGH D KD+PWW ++T
Sbjct: 627 DGLEIWDAIKSWVEEYVSFYYKSDEELQKDPELQAWWKELVEVGHGDLKDKPWWQKMQTR 686
Query: 635 EDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSDEDWKLFLEKP 694
E+L++ T+ W+AS HAAVNFGQY +GG NRPT++R MP + ++ + P
Sbjct: 687 EELVEASATLIWIASALHAAVNFGQYPYGGLILNRPTISRRFMP--EKGSPEYDALAKNP 744
Query: 695 EDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQ-MEQAWGDDPVIKAAFERFSGRL 753
E L+ + + + I++ LS H+ DE YLG++ W D AF+RF L
Sbjct: 745 EKEFLKTITGKKETLIDLTIIEILSRHASDEFYLGQRDGGDYWTSDAGPLEAFKRFGKNL 804
Query: 754 KELEGIIDERNANENLKNRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 802
+E+E + E+N +E L+NR G +PY L+ P SE G+T +G+P SISI
Sbjct: 805 EEIEKKLIEKNNDETLRNRYGPAKMPYTLLYPSSEEGLTFRGIPNSISI 853
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
9(Z),11(E)-Octadecadienoic Acid
pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
Methoxy-Phenol
pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
(Egc)
pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
4-nitrocatechol At 2.15 Angstrom Resolution
pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
2.0 A Resolution
pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/776 (45%), Positives = 481/776 (61%), Gaps = 22/776 (2%)
Query: 36 GHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL-DGPRNGPVNITCGSWVQSKHV 94
G ++ FE G GA ++N E +L + L D P +G ++ C SW+ + +
Sbjct: 95 GQSAFKINFEWDDGSGIPGAFYIKNFMQTEFFLVSLTLEDIPNHGSIHFVCNSWIYNAKL 154
Query: 95 NKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPD 154
K RIFF N++YLPS+TP L + R EEL NLRGDG GERK +RIYDYDVYNDLG PD
Sbjct: 155 FKSDRIFFANQTYLPSETPAPLVKYREEELHNLRGDGTGERKEWERIYDYDVYNDLGDPD 214
Query: 155 FCSELARPVLGGKE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQLQFSA 213
ARPVLGG + PYPRR RTGR P DP SESR+ Y+PRDEAF +K F
Sbjct: 215 KGENHARPVLGGNDTFPYPRRGRTGRKPTRKDPNSESRSNDVYLPRDEAFGHLKSSDFLT 274
Query: 214 KTLYSVLHGLVPSLETAIIDTDLGFP-----YFTTIDKLFNEGVNVPMPETFKEKALWRT 268
L SV ++P L++A DL F F + L++ G+ +P K L
Sbjct: 275 YGLKSVSQNVLPLLQSAF---DLNFTPREFDSFDEVHGLYSGGIKLPTDIISKISPL--- 328
Query: 269 ILPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLR 328
P L + G++ L+F P+ + K W DEEF R+ LAG+NP IR + ++P R
Sbjct: 329 --PVLKEIFRTDGEQALKFPPPKVIQVSKSAWMTDEEFAREMLAGVNPNLIRCLKDFPPR 386
Query: 329 STLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKG 388
S LD ++YG S ITKE +E + G +TV+EAI+ K+LF+LD+HD ++PY+ ++
Sbjct: 387 SKLDSQVYGDHTSQITKEHLEPNLEG-LTVDEAIQNKRLFLLDHHDPIMPYLRRINA-TS 444
Query: 389 TTLYGSRTLFFSYPSGTLRPLAIELT--RPPMDGKPQWKQVFTPSWHSTECWLWRLAKAH 446
T Y +RT+ F GTLRPLAIEL+ P D + QVF P+ E +W LAKA+
Sbjct: 445 TKAYATRTILFLKNDGTLRPLAIELSLPHPQGDQSGAFSQVFLPADEGVESSIWLLAKAY 504
Query: 447 VLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREA 506
V+ +DS YHQLVSHWL TH EP+IIATNR LS +HPI +LL PH+R TM IN LAR +
Sbjct: 505 VVVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIYKLLHPHYRDTMNINGLARLS 564
Query: 507 LVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIKLT 566
LVN GG+IE TF G+YS+E+S+V Y K W F +ALP DLI RGMA+EDPS P GI+L
Sbjct: 565 LVNDGGVIEQTFLWGRYSVEMSAVVY-KDWVFTDQALPADLIKRGMAIEDPSCPHGIRLV 623
Query: 567 IEDYPFAKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKDEP 626
IEDYP+ DGL++WDA+K WV ++V YY + ++ D EL++ W E+ VGH DKK+EP
Sbjct: 624 IEDYPYTVDGLEIWDAIKTWVHEYVFLYYKSDDTLREDPELQACWKELVEVGHGDKKNEP 683
Query: 627 WWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSDED 686
WWP ++T E+L++ I W AS HAAVNFGQY +GG NRPT++R MP + +
Sbjct: 684 WWPKMQTREELVEACAIIIWTASALHAAVNFGQYPYGGLILNRPTLSRRFMP--EKGSAE 741
Query: 687 WKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKAAF 746
++ + P+ L+ + Q +++++ LS H+ DE YLG++ W D AF
Sbjct: 742 YEELRKNPQKAYLKTITPKFQTLIDLSVIEILSRHASDEVYLGERDNPNWTSDTRALEAF 801
Query: 747 ERFSGRLKELEGIIDERNANENLKNRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 802
+RF +L ++E + ERN +E L+NR G +PY L+ P S+ G+T +G+P SISI
Sbjct: 802 KRFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKEGLTFRGIPNSISI 857
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
Length = 857
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/776 (45%), Positives = 479/776 (61%), Gaps = 22/776 (2%)
Query: 36 GHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL-DGPRNGPVNITCGSWVQSKHV 94
G ++ FE G GA ++N E +L + L D P +G ++ C SW+ + +
Sbjct: 95 GQSAFKINFEWDDGSGIPGAFYIKNFMQTEFFLVSLTLEDIPNHGSIHFVCNSWIYNAKL 154
Query: 95 NKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPD 154
K RIFF N++YLPS+TP L + R EEL NLRGDG GERK +RIYDYDVYNDLG PD
Sbjct: 155 FKSDRIFFANQTYLPSETPAPLVKYREEELHNLRGDGTGERKEWERIYDYDVYNDLGDPD 214
Query: 155 FCSELARPVLGGKE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQLQFSA 213
ARPVLGG + PYPRR RTGR P DP SESR+ Y+PRDEAF +K F
Sbjct: 215 KGENHARPVLGGNDTFPYPRRGRTGRKPTRKDPNSESRSNDVYLPRDEAFGHLKSSDFLT 274
Query: 214 KTLYSVLHGLVPSLETAIIDTDLGFP-----YFTTIDKLFNEGVNVPMPETFKEKALWRT 268
L SV ++P L++A DL F F + L++ G+ +P K L
Sbjct: 275 YGLKSVSQNVLPLLQSAF---DLNFTPREFDSFDEVHGLYSGGIKLPTDIISKISPL--- 328
Query: 269 ILPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLR 328
P L + G++ L+F P+ + K W DEEF R+ LAG+NP IR + ++P R
Sbjct: 329 --PVLKEIFRTDGEQALKFPPPKVIQVSKSAWMTDEEFAREMLAGVNPNLIRCLKDFPPR 386
Query: 329 STLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKG 388
S LD ++YG S ITKE +E + G +TV+EAI+ K+LF+LD+HD ++PY+ ++
Sbjct: 387 SKLDSQVYGDHTSQITKEHLEPNLEG-LTVDEAIQNKRLFLLDHHDPIMPYLRRINA-TS 444
Query: 389 TTLYGSRTLFFSYPSGTLRPLAIELT--RPPMDGKPQWKQVFTPSWHSTECWLWRLAKAH 446
T Y +RT+ F GTLRPLAIEL+ P D + QVF P+ E +W LAKA+
Sbjct: 445 TKAYATRTILFLKNDGTLRPLAIELSLPHPQGDQSGAFSQVFLPADEGVESSIWLLAKAY 504
Query: 447 VLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREA 506
V+ +DS YHQLVSH L TH EP+IIATNR LS +HPI +LL PH+R TM IN LAR +
Sbjct: 505 VVVNDSCYHQLVSHXLNTHAVVEPFIIATNRHLSVVHPIYKLLHPHYRDTMNINGLARLS 564
Query: 507 LVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIKLT 566
VN GG+IE TF G+YS+E+S+V Y K W F +ALP DLI RGMA+EDPS P GI+L
Sbjct: 565 XVNDGGVIEQTFLWGRYSVEMSAVVY-KDWVFTDQALPADLIKRGMAIEDPSCPHGIRLV 623
Query: 567 IEDYPFAKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKDEP 626
IEDYP+ DGL++WDA+K WV ++V YY + ++ D EL++ W E+ VGH DKK+EP
Sbjct: 624 IEDYPYTVDGLEIWDAIKTWVHEYVFLYYKSDDTLREDPELQACWKELVEVGHGDKKNEP 683
Query: 627 WWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSDED 686
WWP ++T E+L++ I W AS HAAVNFGQY +GG NRPT++R MP + +
Sbjct: 684 WWPKMQTREELVEACAIIIWTASALHAAVNFGQYPYGGLILNRPTLSRRFMP--EKGSAE 741
Query: 687 WKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKAAF 746
++ + P+ L+ + Q +++++ LS H+ DE YLG++ W D AF
Sbjct: 742 YEELRKNPQKAYLKTITPKFQTLIDLSVIEILSRHASDEVYLGERDNPNWTSDTRALEAF 801
Query: 747 ERFSGRLKELEGIIDERNANENLKNRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 802
+RF +L ++E + ERN +E L+NR G +PY L+ P S+ G+T +G+P SISI
Sbjct: 802 KRFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKEGLTFRGIPNSISI 857
>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D
pdb|2IUK|B Chain B, Crystal Structure Of Soybean Lipoxygenase-D
Length = 864
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/779 (45%), Positives = 477/779 (61%), Gaps = 22/779 (2%)
Query: 31 GEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL-DGPRNGPVNITCGSWV 89
G +D I+ FE SFG GA ++N E +L + L D P +G + C SWV
Sbjct: 101 GARQDAFSIF---FEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWV 157
Query: 90 QSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYND 149
+ K+ RIFF N +YLPS TP L + R EE LRGDG G+RK DRIYDYDVYND
Sbjct: 158 YNFRSYKKNRIFFVNDTYLPSATPAPLLKYRKEEFEVLRGDGTGKRKDFDRIYDYDVYND 217
Query: 150 LGVPDFCSELARPVLGGKE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ 208
LG PD RP+LGG +PYP R RTGR TDP SE + YVPRDE F +K
Sbjct: 218 LGNPDGGD--PRPILGGCSIYPYPLRVRTGRERTRTDPNSEKPGEV-YVPRDENFGHLKS 274
Query: 209 LQFSAKTLYSVLHGLVPSLETAIID---TDLGFPYFTTIDKLFNEGVNVPMPETFKEKAL 265
F + S+ H ++P ++AI T F F + L+ G+ +P +
Sbjct: 275 SDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPT-----DILS 329
Query: 266 WRTILPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEW 325
+ LP L + G+ VL+F P K DEEF R+ +AG+NP IR + E+
Sbjct: 330 QISPLPALKEIFRTDGENVLQFPPPHVAKVSKSGVMTDEEFAREVIAGVNPNVIRRLQEF 389
Query: 326 PLRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRE 385
P +STLDP +YG S ITKE +E +GG+ TVEEA+ ++LFILDY D +PY+ ++
Sbjct: 390 PPKSTLDPTLYGDQTSTITKEQLEINMGGV-TVEEALSTQRLFILDYQDAFIPYLTRINS 448
Query: 386 LKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQ--VFTPSWHSTECWLWRLA 443
L Y +RT+ F GTL+PLAIEL++P DG + V P+ + +W LA
Sbjct: 449 LPTAKAYATRTILFLKDDGTLKPLAIELSKPHPDGDNLGPESIVVLPATEGVDSTIWLLA 508
Query: 444 KAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALA 503
KAHV+ +DSGYHQLVSHWL TH EP+ IATNR LS +HPI +LL PH+R T+ IN LA
Sbjct: 509 KAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRDTININGLA 568
Query: 504 REALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGI 563
R++L+NA GIIE +F PGKYS+E+SS Y K+W F H+ALP DL+ RG+A+EDPSAP G+
Sbjct: 569 RQSLINADGIIEKSFLPGKYSIEMSSSVY-KNWVFTHQALPADLVKRGLAIEDPSAPHGL 627
Query: 564 KLTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKK 623
+L IEDYP+A DGL++WDA+K WV ++V+ YYP ++V+ D EL++WW E GH D K
Sbjct: 628 RLVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDAAVQQDTELQAWWKEAVEKGHGDLK 687
Query: 624 DEPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPS 683
++PWWP +T EDLI + I W AS HAAVNFGQY +GG NRPT+AR +P E
Sbjct: 688 EKPWWPKKQTTEDLIQSCSIIVWTASALHAAVNFGQYPYGGLILNRPTLARRFIPAEGTP 747
Query: 684 DEDWKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIK 743
+ D ++ P+ L+ + + +++++ LS H+ DE YLG++ W D
Sbjct: 748 EYDE--MVKNPQKAYLRTITPKFETLIDLSVIEILSRHASDEIYLGERETPNWTTDKKAL 805
Query: 744 AAFERFSGRLKELEGIIDERNANENLKNRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 802
AF+RF +L +EG I+ RN++ +L+NRTG +PY L+ SE G+T +G+P SISI
Sbjct: 806 EAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEEGLTFKGIPNSISI 864
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement
Length = 839
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/779 (43%), Positives = 480/779 (61%), Gaps = 28/779 (3%)
Query: 36 GHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHV 94
G + FE S G GA ++N E +L + L+ N G + C SWV + +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 95 NKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPD 154
K RIFF N +Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 155 FCSELARPVLGGKE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQ 210
+LARPVLGG PYPRR RTGR P TDP +E + + YVPRDE +K L+
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALE 256
Query: 211 FSAKTLYSVLHGLVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRT 268
K+L ++ P+ E+A + T + F F + L+ G+ +P + + T
Sbjct: 257 IGTKSLSQIVQ---PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVIST 306
Query: 269 ILPR-LVKGIEDT-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWP 326
I+P ++K + T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P
Sbjct: 307 IIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFP 366
Query: 327 LRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVREL 386
+S LDP IYG S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L
Sbjct: 367 PKSNLDPAIYGDQSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQL 423
Query: 387 KGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAK 444
Y +RT+ F GTL+P+AIEL+ P G QV P+ E +W LAK
Sbjct: 424 NSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAK 483
Query: 445 AHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAR 504
A+V+ +DS YHQL+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR
Sbjct: 484 AYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALAR 543
Query: 505 EALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIK 564
++L+NA GIIE+TF P KYS+E+SS Y K+W F +ALP DLI RG+A++DPS P G++
Sbjct: 544 QSLINANGIIETTFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 565 LTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKD 624
L IEDYP+A DGL++W A+K WV ++V YY V++D EL+ WW E GH D KD
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 625 EPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSD 684
+PWWP L+T EDL+++ I W+AS HAAVNFGQY +GG NRPT +R +P +
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPTASRRLLP--EKGT 720
Query: 685 EDWKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKA 744
+++ + E L+ S++ +++++ LS+H+ DE YLG++ W D
Sbjct: 721 PEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSKALQ 780
Query: 745 AFERFSGRLKELEGIIDERNANENLK-NRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 802
AF++F +LKE+E + RN + +L+ NR G +PY L+ P SE G+T +G+P SISI
Sbjct: 781 AFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
pdb|1F8N|A Chain A, Lipoxygenase-1 (Soybean) At 100k, New Refinement
pdb|1YGE|A Chain A, Lipoxygenase-1 (Soybean) At 100k
pdb|2SBL|A Chain A, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
Length = 839
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/779 (43%), Positives = 480/779 (61%), Gaps = 28/779 (3%)
Query: 36 GHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHV 94
G + FE S G GA ++N E +L + L+ N G + C SWV + +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 95 NKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPD 154
K RIFF N +Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 155 FCSELARPVLGGKE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQ 210
+LARPVLGG PYPRR RTGR P TDP +E + + YVPRDE +K L+
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALE 256
Query: 211 FSAKTLYSVLHGLVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRT 268
K+L ++ P+ E+A + T + F F + L+ G+ +P + + T
Sbjct: 257 IGTKSLSQIVQ---PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVIST 306
Query: 269 ILPR-LVKGIEDT-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWP 326
I+P ++K + T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P
Sbjct: 307 IIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFP 366
Query: 327 LRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVREL 386
+S LDP IYG S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L
Sbjct: 367 PKSNLDPAIYGDQSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQL 423
Query: 387 KGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAK 444
Y +RT+ F GTL+P+AIEL+ P G QV P+ E +W LAK
Sbjct: 424 NSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAK 483
Query: 445 AHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAR 504
A+V+ +DS YHQL+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR
Sbjct: 484 AYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALAR 543
Query: 505 EALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIK 564
++L+NA GIIE+TF P KYS+E+SS Y K+W F +ALP DLI RG+A++DPS P G++
Sbjct: 544 QSLINANGIIETTFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 565 LTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKD 624
L IEDYP+A DGL++W A+K WV ++V YY V++D EL+ WW E GH D KD
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 625 EPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSD 684
+PWWP L+T EDL+++ I W+AS HAAVNFGQY +GG NRPT +R +P +
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPTASRRLLP--EKGT 720
Query: 685 EDWKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKA 744
+++ + E L+ S++ +++++ LS+H+ DE YLG++ W D
Sbjct: 721 PEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSKALQ 780
Query: 745 AFERFSGRLKELEGIIDERNANENLK-NRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 802
AF++F +LKE+E + RN + +L+ NR G +PY L+ P SE G+T +G+P SISI
Sbjct: 781 AFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant
Length = 839
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/779 (43%), Positives = 480/779 (61%), Gaps = 28/779 (3%)
Query: 36 GHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHV 94
G + FE S G GA ++N E +L + L+ N G + C SWV + +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 95 NKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPD 154
K RIFF N +Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 155 FCSELARPVLGGKE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQ 210
+LARPVLGG PYPRR RTGR P TDP +E + + YVPRDE +K L+
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALE 256
Query: 211 FSAKTLYSVLHGLVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRT 268
K+L ++ P+ E+A + T + F F + L+ G+ +P + + T
Sbjct: 257 IGTKSLSQIVQ---PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVIST 306
Query: 269 ILPR-LVKGIEDT-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWP 326
I+P ++K + T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P
Sbjct: 307 IIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFP 366
Query: 327 LRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVREL 386
+S LDP IYG S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L
Sbjct: 367 PKSNLDPAIYGDQSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQL 423
Query: 387 KGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAK 444
Y +RT+ F GTL+P+AIEL+ P G QV P+ E +W LAK
Sbjct: 424 NSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAK 483
Query: 445 AHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAR 504
A+V+ +DS YHQL+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR
Sbjct: 484 AYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALAR 543
Query: 505 EALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIK 564
++L+NA GI+E+TF P KYS+E+SS Y K+W F +ALP DLI RG+A++DPS P G++
Sbjct: 544 QSLINANGIVETTFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 565 LTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKD 624
L IEDYP+A DGL++W A+K WV ++V YY V++D EL+ WW E GH D KD
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 625 EPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSD 684
+PWWP L+T EDL+++ I W+AS HAAVNFGQY +GG NRPT +R +P +
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPTASRRLLP--EKGT 720
Query: 685 EDWKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKA 744
+++ + E L+ S++ +++++ LS+H+ DE YLG++ W D
Sbjct: 721 PEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSKALQ 780
Query: 745 AFERFSGRLKELEGIIDERNANENLK-NRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 802
AF++F +LKE+E + RN + +L+ NR G +PY L+ P SE G+T +G+P SISI
Sbjct: 781 AFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant
Length = 839
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/779 (43%), Positives = 480/779 (61%), Gaps = 28/779 (3%)
Query: 36 GHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHV 94
G + FE S G GA ++N E +L + L+ N G + C SWV + +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 95 NKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPD 154
K RIFF N +Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 155 FCSELARPVLGGKE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQ 210
+LARPVLGG PYPRR RTGR P TDP +E + + YVPRDE +K L+
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALE 256
Query: 211 FSAKTLYSVLHGLVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRT 268
K+L ++ P+ E+A + T + F F + L+ G+ +P + + T
Sbjct: 257 IGTKSLSQIVQ---PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVIST 306
Query: 269 ILPR-LVKGIEDT-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWP 326
I+P ++K + T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P
Sbjct: 307 IIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFP 366
Query: 327 LRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVREL 386
+S LDP IYG S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L
Sbjct: 367 PKSNLDPAIYGDQSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQL 423
Query: 387 KGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAK 444
Y +RT+ F GTL+P+AIEL+ P G QV P+ E +W LAK
Sbjct: 424 NSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAK 483
Query: 445 AHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAR 504
A+V+ +DS YHQL+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR
Sbjct: 484 AYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALAR 543
Query: 505 EALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIK 564
++L+NA GIIE+TF P KYS+E+SS Y K+W F +ALP DLI RG+A++DPS P G++
Sbjct: 544 QSLINANGIIETTFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 565 LTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKD 624
L IEDYP+A DGL++W A+K WV ++V YY V++D EL+ WW E GH D KD
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 625 EPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSD 684
+PWWP L+T EDL+++ I W+AS HAAVNFG+Y +GG NRPT +R +P +
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGEYPYGGLIMNRPTASRRLLP--EKGT 720
Query: 685 EDWKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKA 744
+++ + E L+ S++ +++++ LS+H+ DE YLG++ W D
Sbjct: 721 PEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSKALQ 780
Query: 745 AFERFSGRLKELEGIIDERNANENLK-NRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 802
AF++F +LKE+E + RN + +L+ NR G +PY L+ P SE G+T +G+P SISI
Sbjct: 781 AFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant
Length = 839
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/779 (43%), Positives = 480/779 (61%), Gaps = 28/779 (3%)
Query: 36 GHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHV 94
G + FE S G GA ++N E +L + L+ N G + C SWV + +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 95 NKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPD 154
K RIFF N +Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 155 FCSELARPVLGGKE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQ 210
+LARPVLGG PYPRR RTGR P TDP +E + + YVPRDE +K L+
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALE 256
Query: 211 FSAKTLYSVLHGLVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRT 268
K+L ++ P+ E+A + T + F F + L+ G+ +P + + T
Sbjct: 257 IGTKSLSQIVQ---PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVIST 306
Query: 269 ILPR-LVKGIEDT-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWP 326
I+P ++K + T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P
Sbjct: 307 IIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFP 366
Query: 327 LRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVREL 386
+S LDP IYG S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L
Sbjct: 367 PKSNLDPAIYGDQSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQL 423
Query: 387 KGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAK 444
Y +RT+ F GTL+P+AIEL+ P G QV P+ E +W LAK
Sbjct: 424 NSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAK 483
Query: 445 AHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAR 504
A+V+ +DS YH+L+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR
Sbjct: 484 AYVIVNDSCYHELMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALAR 543
Query: 505 EALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIK 564
++L+NA GIIE+TF P KYS+E+SS Y K+W F +ALP DLI RG+A++DPS P G++
Sbjct: 544 QSLINANGIIETTFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 565 LTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKD 624
L IEDYP+A DGL++W A+K WV ++V YY V++D EL+ WW E GH D KD
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 625 EPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSD 684
+PWWP L+T EDL+++ I W+AS HAAVNFGQY +GG NRPT +R +P +
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPTASRRLLP--EKGT 720
Query: 685 EDWKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKA 744
+++ + E L+ S++ +++++ LS+H+ DE YLG++ W D
Sbjct: 721 PEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSKALQ 780
Query: 745 AFERFSGRLKELEGIIDERNANENLK-NRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 802
AF++F +LKE+E + RN + +L+ NR G +PY L+ P SE G+T +G+P SISI
Sbjct: 781 AFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant
Length = 839
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/779 (43%), Positives = 480/779 (61%), Gaps = 28/779 (3%)
Query: 36 GHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHV 94
G + FE S G GA ++N E +L + L+ N G + C SWV + +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 95 NKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPD 154
K RIFF N +Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 155 FCSELARPVLGGKE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQ 210
+LARPVLGG PYPRR RTGR P TDP +E + + YVPRDE +K L+
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALE 256
Query: 211 FSAKTLYSVLHGLVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRT 268
K+L ++ P+ E+A + T + F F + L+ G+ +P + + T
Sbjct: 257 IGTKSLSQIVQ---PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVIST 306
Query: 269 ILPR-LVKGIEDT-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWP 326
I+P ++K + T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P
Sbjct: 307 IIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFP 366
Query: 327 LRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVREL 386
+S LDP IYG S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L
Sbjct: 367 PKSNLDPAIYGDQSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQL 423
Query: 387 KGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAK 444
Y +RT+ F GTL+P+AIEL+ P G QV P+ E +W LAK
Sbjct: 424 NSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAK 483
Query: 445 AHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAR 504
A+V+ +DS YHQL+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR
Sbjct: 484 AYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALAR 543
Query: 505 EALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIK 564
++L+NA GI+E+TF P KYS+E+SS Y K+W F +ALP DLI RG+A++DPS P G++
Sbjct: 544 QSLINANGILETTFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 565 LTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKD 624
L IEDYP+A DGL++W A+K WV ++V YY V++D EL+ WW E GH D KD
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 625 EPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSD 684
+PWWP L+T EDL+++ I W+AS HAAVNFGQY +GG NRPT +R +P +
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPTASRRLLP--EKGT 720
Query: 685 EDWKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKA 744
+++ + E L+ S++ +++++ LS+H+ DE YLG++ W D
Sbjct: 721 PEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSKALQ 780
Query: 745 AFERFSGRLKELEGIIDERNANENLK-NRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 802
AF++F +LKE+E + RN + +L+ NR G +PY L+ P SE G+T +G+P SISI
Sbjct: 781 AFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant
Length = 839
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/779 (43%), Positives = 479/779 (61%), Gaps = 28/779 (3%)
Query: 36 GHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHV 94
G + FE S G GA ++N E +L + L+ N G + C SWV + +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 95 NKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPD 154
K RIFF N +Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 155 FCSELARPVLGGKE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQ 210
+LARPVLGG PYPRR RTGR P TDP +E + + YVPRDE +K L+
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALE 256
Query: 211 FSAKTLYSVLHGLVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRT 268
K+L ++ P+ E+A + T + F F + L+ G+ +P + + T
Sbjct: 257 IGTKSLSQIVQ---PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVIST 306
Query: 269 ILPR-LVKGIEDT-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWP 326
I+P ++K + T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P
Sbjct: 307 IIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFP 366
Query: 327 LRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVREL 386
+S LDP IYG S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L
Sbjct: 367 PKSNLDPAIYGDQSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQL 423
Query: 387 KGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAK 444
Y +RT+ F GTL+P+AIEL+ P G QV P+ E +W LAK
Sbjct: 424 NSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAK 483
Query: 445 AHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAR 504
A+V+ +DS YHQL+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR
Sbjct: 484 AYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALAR 543
Query: 505 EALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIK 564
++L+NA GI E+TF P KYS+E+SS Y K+W F +ALP DLI RG+A++DPS P G++
Sbjct: 544 QSLINANGIAETTFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 565 LTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKD 624
L IEDYP+A DGL++W A+K WV ++V YY V++D EL+ WW E GH D KD
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 625 EPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSD 684
+PWWP L+T EDL+++ I W+AS HAAVNFGQY +GG NRPT +R +P +
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPTASRRLLP--EKGT 720
Query: 685 EDWKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKA 744
+++ + E L+ S++ +++++ LS+H+ DE YLG++ W D
Sbjct: 721 PEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSKALQ 780
Query: 745 AFERFSGRLKELEGIIDERNANENLK-NRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 802
AF++F +LKE+E + RN + +L+ NR G +PY L+ P SE G+T +G+P SISI
Sbjct: 781 AFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant
Length = 839
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/779 (43%), Positives = 480/779 (61%), Gaps = 28/779 (3%)
Query: 36 GHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHV 94
G + FE S G GA ++N E +L + L+ N G + C SWV + +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 95 NKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPD 154
K RIFF N +Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 155 FCSELARPVLGGKE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQ 210
+LARPVLGG PYPRR RTGR P TDP +E + + YVPRDE +K L+
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALE 256
Query: 211 FSAKTLYSVLHGLVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRT 268
K+L ++ P+ E+A + T + F F + L+ G+ +P + + T
Sbjct: 257 IGTKSLSQIVQ---PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVIST 306
Query: 269 ILPR-LVKGIEDT-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWP 326
I+P ++K + T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P
Sbjct: 307 IIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFP 366
Query: 327 LRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVREL 386
+S LDP IYG S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L
Sbjct: 367 PKSNLDPAIYGDQSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQL 423
Query: 387 KGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAK 444
Y +RT+ F GTL+P+AIEL+ P G QV P+ E +W LAK
Sbjct: 424 NSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAK 483
Query: 445 AHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAR 504
A+V+ +DS YHQL+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR
Sbjct: 484 AYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALAR 543
Query: 505 EALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIK 564
++L+NA GIIE+TF P KYS+E+SS Y K+W F +ALP DLI RG+A++DPS P G++
Sbjct: 544 QSLINANGIIETTFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 565 LTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKD 624
L IEDYP+A DGL++W A+K WV ++V YY V++D EL+ WW E GH D KD
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 625 EPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSD 684
+PWWP L+T EDL+++ I W+AS HAAV+FGQY +GG NRPT +R +P +
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVHFGQYPYGGLIMNRPTASRRLLP--EKGT 720
Query: 685 EDWKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKA 744
+++ + E L+ S++ +++++ LS+H+ DE YLG++ W D
Sbjct: 721 PEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSKALQ 780
Query: 745 AFERFSGRLKELEGIIDERNANENLK-NRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 802
AF++F +LKE+E + RN + +L+ NR G +PY L+ P SE G+T +G+P SISI
Sbjct: 781 AFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant
Length = 839
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/779 (43%), Positives = 479/779 (61%), Gaps = 28/779 (3%)
Query: 36 GHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHV 94
G + FE S G GA ++N E +L + L+ N G + C SWV + +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 95 NKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPD 154
K RIFF N +Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 155 FCSELARPVLGGKE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQ 210
+LARPVLGG PYPRR RTGR P TDP +E + + YVPRDE +K L+
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALE 256
Query: 211 FSAKTLYSVLHGLVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRT 268
K+L ++ P+ E+A + T + F F + L+ G+ +P + + T
Sbjct: 257 IGTKSLSQIVQ---PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVIST 306
Query: 269 ILPR-LVKGIEDT-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWP 326
I+P ++K + T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P
Sbjct: 307 IIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFP 366
Query: 327 LRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVREL 386
+S LDP IYG S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L
Sbjct: 367 PKSNLDPAIYGDQSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQL 423
Query: 387 KGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAK 444
Y +RT+ F GTL+P+AIEL+ P G QV P+ E +W LAK
Sbjct: 424 NSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAK 483
Query: 445 AHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAR 504
A+V+ +DS YHQL+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR
Sbjct: 484 AYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALAR 543
Query: 505 EALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIK 564
++L+NA GIIE+TF P KYS+E+SS Y K+W F +ALP DLI RG+A++DPS P G++
Sbjct: 544 QSLINANGIIETTFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 565 LTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKD 624
L IEDYP+A DGL++W A+K WV ++V YY V++D EL+ WW E GH D KD
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 625 EPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSD 684
+PWWP L+T EDL+++ I W+AS HAAVNFG Y +GG NRPT +R +P +
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGNYPYGGLIMNRPTASRRLLP--EKGT 720
Query: 685 EDWKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKA 744
+++ + E L+ S++ +++++ LS+H+ DE YLG++ W D
Sbjct: 721 PEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSKALQ 780
Query: 745 AFERFSGRLKELEGIIDERNANENLK-NRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 802
AF++F +LKE+E + RN + +L+ NR G +PY L+ P SE G+T +G+P SISI
Sbjct: 781 AFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant
Length = 839
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/779 (43%), Positives = 479/779 (61%), Gaps = 28/779 (3%)
Query: 36 GHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHV 94
G + FE S G GA ++N E +L + L+ N G + C SWV + +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 95 NKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPD 154
K RIFF N +Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 155 FCSELARPVLGGKE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQ 210
+LARPVLGG PYPRR RTGR P TDP +E + + YVPRDE +K L+
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALE 256
Query: 211 FSAKTLYSVLHGLVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRT 268
K+L ++ P+ E+A + T + F F + L+ G+ +P + + T
Sbjct: 257 IGTKSLSQIVQ---PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVIST 306
Query: 269 ILPR-LVKGIEDT-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWP 326
I+P ++K + T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P
Sbjct: 307 IIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFP 366
Query: 327 LRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVREL 386
+S LDP IYG S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L
Sbjct: 367 PKSNLDPAIYGDQSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQL 423
Query: 387 KGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAK 444
Y +RT+ F GTL+P+AIEL+ P G QV P+ E +W LAK
Sbjct: 424 NSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAK 483
Query: 445 AHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAR 504
A+V+ +DS YH L+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR
Sbjct: 484 AYVIVNDSCYHALMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALAR 543
Query: 505 EALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIK 564
++L+NA GIIE+TF P KYS+E+SS Y K+W F +ALP DLI RG+A++DPS P G++
Sbjct: 544 QSLINANGIIETTFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 565 LTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKD 624
L IEDYP+A DGL++W A+K WV ++V YY V++D EL+ WW E GH D KD
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 625 EPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSD 684
+PWWP L+T EDL+++ I W+AS HAAVNFGQY +GG NRPT +R +P +
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPTASRRLLP--EKGT 720
Query: 685 EDWKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKA 744
+++ + E L+ S++ +++++ LS+H+ DE YLG++ W D
Sbjct: 721 PEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSKALQ 780
Query: 745 AFERFSGRLKELEGIIDERNANENLK-NRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 802
AF++F +LKE+E + RN + +L+ NR G +PY L+ P SE G+T +G+P SISI
Sbjct: 781 AFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant
Length = 839
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/779 (43%), Positives = 479/779 (61%), Gaps = 28/779 (3%)
Query: 36 GHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHV 94
G + FE S G GA ++N E +L + L+ N G + C SWV + +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 95 NKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPD 154
K RIFF N +Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 155 FCSELARPVLGGKE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQ 210
+LARPVLGG PYPRR RTGR P TDP +E + + YVPRDE +K L+
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALE 256
Query: 211 FSAKTLYSVLHGLVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRT 268
K+L ++ P+ E+A + T + F F + L+ G+ +P + + T
Sbjct: 257 IGTKSLSQIVQ---PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVIST 306
Query: 269 ILPR-LVKGIEDT-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWP 326
I+P ++K + T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P
Sbjct: 307 IIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFP 366
Query: 327 LRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVREL 386
+S LDP IYG S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L
Sbjct: 367 PKSNLDPAIYGDQSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQL 423
Query: 387 KGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAK 444
Y +RT+ F GTL+P+AIEL+ P G QV P+ E +W LAK
Sbjct: 424 NSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAK 483
Query: 445 AHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAR 504
A+V+ +DS YHQL+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR
Sbjct: 484 AYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALAR 543
Query: 505 EALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIK 564
++L+NA GIIE+TF P KYS+E+SS Y K+W F +ALP DLI RG+A++DPS P G++
Sbjct: 544 QSLINANGIIETTFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 565 LTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKD 624
L IEDYP+A DGL++W A+K WV ++V YY V++D EL+ WW E GH D KD
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 625 EPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSD 684
+PWWP L+T EDL+++ I W+AS HAAV FGQY +GG NRPT +R +P +
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVGFGQYPYGGLIMNRPTASRRLLP--EKGT 720
Query: 685 EDWKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKA 744
+++ + E L+ S++ +++++ LS+H+ DE YLG++ W D
Sbjct: 721 PEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSKALQ 780
Query: 745 AFERFSGRLKELEGIIDERNANENLK-NRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 802
AF++F +LKE+E + RN + +L+ NR G +PY L+ P SE G+T +G+P SISI
Sbjct: 781 AFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant
Length = 839
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/779 (43%), Positives = 479/779 (61%), Gaps = 28/779 (3%)
Query: 36 GHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHV 94
G + FE S G GA ++N E +L + L+ N G + C SWV + +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 95 NKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPD 154
K RIFF N +Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 155 FCSELARPVLGGKE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQ 210
+LARPVLGG PYPRR RTGR P TDP +E + + YVPRDE +K L+
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALE 256
Query: 211 FSAKTLYSVLHGLVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRT 268
K+L ++ P+ E+A + T + F F + L+ G+ +P + + T
Sbjct: 257 IGTKSLSQIVQ---PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVIST 306
Query: 269 ILPR-LVKGIEDT-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWP 326
I+P ++K + T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P
Sbjct: 307 IIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFP 366
Query: 327 LRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVREL 386
+S LDP IYG S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L
Sbjct: 367 PKSNLDPAIYGDQSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQL 423
Query: 387 KGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAK 444
Y +RT+ F GTL+P+AIEL+ P G QV P+ E +W LAK
Sbjct: 424 NSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAK 483
Query: 445 AHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAR 504
A+V+ +DS YHQL+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR
Sbjct: 484 AYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALAR 543
Query: 505 EALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIK 564
++L+NA GI E+TF P KYS+E+SS Y K+W F +ALP DLI RG+A++DPS P G++
Sbjct: 544 QSLINANGIGETTFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 565 LTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKD 624
L IEDYP+A DGL++W A+K WV ++V YY V++D EL+ WW E GH D KD
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 625 EPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSD 684
+PWWP L+T EDL+++ I W+AS HAAVNFGQY +GG NRPT +R +P +
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPTASRRLLP--EKGT 720
Query: 685 EDWKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKA 744
+++ + E L+ S++ +++++ LS+H+ DE YLG++ W D
Sbjct: 721 PEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSKALQ 780
Query: 745 AFERFSGRLKELEGIIDERNANENLK-NRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 802
AF++F +LKE+E + RN + +L+ NR G +PY L+ P SE G+T +G+P SISI
Sbjct: 781 AFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|3O8Y|A Chain A, Stable-5-Lipoxygenase
pdb|3O8Y|B Chain B, Stable-5-Lipoxygenase
Length = 691
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 140/472 (29%), Positives = 218/472 (46%), Gaps = 42/472 (8%)
Query: 300 WFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVE 359
W D FG Q L G NP IR TE P + +T E++E + +++E
Sbjct: 244 WQEDLMFGYQFLNGANPVLIRRCTELP------------EKLPVTTEMVECSLERQLSLE 291
Query: 360 EAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMD 419
+ ++Q +FI+D+ L K L L + + + P+AI+L + P D
Sbjct: 292 QEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGD 351
Query: 420 GKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQL 479
P +F PS + W LAK V + D HQ ++H LRTH +E + IA RQL
Sbjct: 352 ENP----IFLPSDAKYD---WLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQL 404
Query: 480 SAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFD 539
A+HPI +LL H R+T+ IN ARE L+ G+ + + G H +
Sbjct: 405 PAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGG----------GGHVQMV 454
Query: 540 HEALPKDLISRGMAVEDPSAPRGI--KLTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPN 597
A+ KDL + + RG+ K I Y + DGL +W+A++ + + V+ YY
Sbjct: 455 QRAM-KDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEG 513
Query: 598 PSSVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPEDLIDIITTIAWVASGHHAAVNF 657
VE D EL+ + ++ G +K + +K+ E L + +T + + AS HAAVNF
Sbjct: 514 DQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNF 573
Query: 658 GQYTFGGYFPNRPTVARTKMPIEDPSDEDWKLFLEKPEDVLLQCFPSQIQATTVMAILDT 717
GQY + + PN P R P + +E+ D L P + ++ + +
Sbjct: 574 GQYDWASWIPNAPPTMRAP-----PPTAKGVVTIEQIVDTL----PDRGRSCWHLGAVWA 624
Query: 718 LSSHSPDEEYLGKQMEQAWGDDPVIKAAFERFSGRLKELEGIIDERNANENL 769
LS +E +LG E+ + + PV K A RF L+ + +I ERN N L
Sbjct: 625 LSQFQENELFLGMYPEEHFIEKPV-KEAMARFRKNLEAIVSVIAERNENLQL 675
>pdb|3V98|A Chain A, S663d Stable-5-Lox
pdb|3V98|B Chain B, S663d Stable-5-Lox
pdb|3V99|A Chain A, S663d Stable-5-Lox In Complex With Arachidonic Acid
pdb|3V99|B Chain B, S663d Stable-5-Lox In Complex With Arachidonic Acid
Length = 691
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 140/472 (29%), Positives = 218/472 (46%), Gaps = 42/472 (8%)
Query: 300 WFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVE 359
W D FG Q L G NP IR TE P + +T E++E + +++E
Sbjct: 244 WQEDLMFGYQFLNGANPVLIRRCTELP------------EKLPVTTEMVECSLERQLSLE 291
Query: 360 EAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMD 419
+ ++Q +FI+D+ L K L L + + + P+AI+L + P D
Sbjct: 292 QEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGD 351
Query: 420 GKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQL 479
P +F PS + W LAK V + D HQ ++H LRTH +E + IA RQL
Sbjct: 352 ENP----IFLPSDAKYD---WLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQL 404
Query: 480 SAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFD 539
A+HPI +LL H R+T+ IN ARE L+ G+ + + G H +
Sbjct: 405 PAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGG----------GGHVQMV 454
Query: 540 HEALPKDLISRGMAVEDPSAPRGI--KLTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPN 597
A+ KDL + + RG+ K I Y + DGL +W+A++ + + V+ YY
Sbjct: 455 QRAM-KDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEG 513
Query: 598 PSSVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPEDLIDIITTIAWVASGHHAAVNF 657
VE D EL+ + ++ G +K + +K+ E L + +T + + AS HAAVNF
Sbjct: 514 DQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNF 573
Query: 658 GQYTFGGYFPNRPTVARTKMPIEDPSDEDWKLFLEKPEDVLLQCFPSQIQATTVMAILDT 717
GQY + + PN P R P + +E+ D L P + ++ + +
Sbjct: 574 GQYDWASWIPNAPPTMRAP-----PPTAKGVVTIEQIVDTL----PDRGRSCWHLGAVWA 624
Query: 718 LSSHSPDEEYLGKQMEQAWGDDPVIKAAFERFSGRLKELEGIIDERNANENL 769
LS +E +LG E+ + + PV K A RF L+ + +I ERN N L
Sbjct: 625 LSQFQENELFLGMYPEEHFIEKPV-KEAMARFRKNLEAIVSVIAERNENLQL 675
>pdb|3V92|B Chain B, S663a Stable-5-Lox
pdb|3V92|A Chain A, S663a Stable-5-Lox
Length = 691
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 140/472 (29%), Positives = 218/472 (46%), Gaps = 42/472 (8%)
Query: 300 WFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVE 359
W D FG Q L G NP IR TE P + +T E++E + +++E
Sbjct: 244 WQEDLMFGYQFLNGANPVLIRRCTELP------------EKLPVTTEMVECSLERQLSLE 291
Query: 360 EAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMD 419
+ ++Q +FI+D+ L K L L + + + P+AI+L + P D
Sbjct: 292 QEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGD 351
Query: 420 GKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQL 479
P +F PS + W LAK V + D HQ ++H LRTH +E + IA RQL
Sbjct: 352 ENP----IFLPSDAKYD---WLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQL 404
Query: 480 SAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFD 539
A+HPI +LL H R+T+ IN ARE L+ G+ + + G H +
Sbjct: 405 PAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGG----------GGHVQMV 454
Query: 540 HEALPKDLISRGMAVEDPSAPRGI--KLTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPN 597
A+ KDL + + RG+ K I Y + DGL +W+A++ + + V+ YY
Sbjct: 455 QRAM-KDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEG 513
Query: 598 PSSVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPEDLIDIITTIAWVASGHHAAVNF 657
VE D EL+ + ++ G +K + +K+ E L + +T + + AS HAAVNF
Sbjct: 514 DQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNF 573
Query: 658 GQYTFGGYFPNRPTVARTKMPIEDPSDEDWKLFLEKPEDVLLQCFPSQIQATTVMAILDT 717
GQY + + PN P R P + +E+ D L P + ++ + +
Sbjct: 574 GQYDWASWIPNAPPTMRAP-----PPTAKGVVTIEQIVDTL----PDRGRSCWHLGAVWA 624
Query: 718 LSSHSPDEEYLGKQMEQAWGDDPVIKAAFERFSGRLKELEGIIDERNANENL 769
LS +E +LG E+ + + PV K A RF L+ + +I ERN N L
Sbjct: 625 LSQFQENELFLGMYPEEHFIEKPV-KEAMARFRKNLEAIVSVIAERNENLQL 675
>pdb|3VF1|A Chain A, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
A Mechanism For Ca-Regulation
pdb|3VF1|B Chain B, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
A Mechanism For Ca-Regulation
Length = 698
Score = 182 bits (462), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 143/499 (28%), Positives = 227/499 (45%), Gaps = 63/499 (12%)
Query: 299 FWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTV 358
+W D FG Q L G NP IR + P + E++EK + T+
Sbjct: 250 YWRDDVWFGSQFLNGSNPEVIRRCDKLP------------ENFPVKNEMVEKLLDRGYTL 297
Query: 359 EEAIKQKKLFILDYHDLL-LPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPP 417
E+A+K+ +FI DY L +P ++ + + T LF+ + + P+AI+L + P
Sbjct: 298 EKAMKEGLIFITDYKILEGIPTMDTPEDKRYITT--PLGLFYLKNNDDIIPIAIQLYQQP 355
Query: 418 MDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNR 477
+ W TP TE W W +AK + D+ YHQ+++H LR H EP +++ R
Sbjct: 356 GENNSIW----TP-LKDTE-WDWIMAKLWLRCADTQYHQMITHLLRCHLMMEPTAVSSWR 409
Query: 478 QLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWR 537
L ++HP+ +LL PH + M IN L R L+ GG + S G KH+R
Sbjct: 410 NLPSVHPVWKLLYPHTKGIMAINTLGRNDLIPTGGAADKVLSIGGGG---QVTLMQKHYR 466
Query: 538 ---FDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPFAKDGLDLWDALKQWVTDFVNHY 594
FD L KDL RG+ + + + D L LW+ + Q+V D + Y
Sbjct: 467 SVTFDSYDLVKDLRQRGVD------------GLRKFYYKDDALLLWNVIHQFVQDIIQIY 514
Query: 595 YPNPSSVESDEELRSWWTEIRTVGH---ADKKDEPWWPVLKTPEDLIDIITTIAWVASGH 651
Y + SV+ D E++ W ++ G+ +D D+ + E+L+ +T + + S
Sbjct: 515 YNDDDSVKKDNEIQDWIRDLHENGYPAGSDGTDKKVPKSFENREELVHFLTVVVFTCSCQ 574
Query: 652 HAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSDEDWKLFLEKPEDVLLQCFPSQIQATTV 711
HAAVNF Q G+ PN PT+ R P E V++ ++ QA T+
Sbjct: 575 HAAVNFSQMATYGFHPNSPTLMRQPPPTEKGKSN---------HKVIMASLANKHQAVTM 625
Query: 712 MAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKAAFERFSGRLKELEGIIDERNANENLKN 771
+++++ L++ P E++LG + +G D AA +F L + I ERN
Sbjct: 626 VSVVNALTTIYPTEKFLGDYADNLFG-DAAAHAAMAKFKSNLANITKQITERN------- 677
Query: 772 RTGAGMV-PYELMKPFSEP 789
GMV PY + P P
Sbjct: 678 ---QGMVSPYTWLIPGHVP 693
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
Length = 1066
Score = 180 bits (457), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 148/524 (28%), Positives = 226/524 (43%), Gaps = 69/524 (13%)
Query: 289 TPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELI 348
TP DR W D FG Q L G NP + P +T E +
Sbjct: 592 TPNMADR----WHEDRWFGYQFLNGANPVILTRCDALP------------SNFPVTNEHV 635
Query: 349 EKEIGGIMTVEEAIKQKKLFILDYHDLL----------------LPYVEKVRELKGTTLY 392
+ ++E IK ++I+D+ L+ +P K E
Sbjct: 636 NASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCA 695
Query: 393 GSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDS 452
LF+ G L P+AI++ + P P W TP H W +AK + +S
Sbjct: 696 APLALFYVNKLGHLMPIAIQINQEPGPENPIW----TP--HEENEHDWMMAKFWLGVAES 749
Query: 453 GYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGG 512
+HQL +H LRTH TE + ++T R L++ HPI +LLQPH + I+ + R+ L+ +GG
Sbjct: 750 NFHQLNTHLLRTHLTTESFALSTWRNLASAHPIFKLLQPHIYGVLAIDTIGRKELIGSGG 809
Query: 513 IIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPF 572
I++ + S G K LP L RG V+DPS G + +
Sbjct: 810 IVDQSLSLGGGGHVTFMEKCFKEVNLQDYHLPNALKKRG--VDDPSKLPG-------FYY 860
Query: 573 AKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVG---HADKKDEPWWP 629
DGL LW+A++ ++ + + +Y N V+ D E++SW ++ G + +D
Sbjct: 861 RDDGLALWEAIETFIGEIIAIFYKNDDDVKRDNEIQSWIYDVHKNGWRVNPGHQDHGVPA 920
Query: 630 VLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSDEDWKL 689
++ E L +++T++ + S HAAVNF Q G+ PN P + R P K
Sbjct: 921 SFESREQLKEVLTSLVFTFSCQHAAVNFSQKDHYGFTPNAPAILRHPPP---------KK 971
Query: 690 FLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKAAFERF 749
E +L PS+ QA +A + L+ S DE YLG AW D + A RF
Sbjct: 972 KGEATLQSILSTLPSKSQAAKAIATVYILTKFSEDERYLGNYSATAWEDKDALD-AINRF 1030
Query: 750 SGRLKELEGIIDERNANENLKNRTGAGMVPYELMKPFSEPGVTG 793
+L+++ I +R NENL+ VPY + P P T
Sbjct: 1031 QDKLEDISKKIKQR--NENLE-------VPYIYLLPERIPNGTA 1065
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|B Chain B, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|C Chain C, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|D Chain D, Crystal Structure Of Delta413-417:gs Lox
Length = 696
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 148/524 (28%), Positives = 226/524 (43%), Gaps = 69/524 (13%)
Query: 289 TPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELI 348
TP DR W D FG Q L G NP + P +T E +
Sbjct: 222 TPNMADR----WHEDRWFGYQFLNGANPVILTRCDALP------------SNFPVTNEHV 265
Query: 349 EKEIGGIMTVEEAIKQKKLFILDYHDLL----------------LPYVEKVRELKGTTLY 392
+ ++E IK ++I+D+ L+ +P K E
Sbjct: 266 NASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCA 325
Query: 393 GSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDS 452
LF+ G L P+AI++ + P P W TP H W +AK + +S
Sbjct: 326 APLALFYVNKLGHLMPIAIQINQEPGPENPIW----TP--HEENEHDWMMAKFWLGVAES 379
Query: 453 GYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGG 512
+HQL +H LRTH TE + ++T R L++ HPI +LLQPH + I+ + R+ L+ +GG
Sbjct: 380 NFHQLNTHLLRTHLTTESFALSTWRNLASAHPIFKLLQPHIYGVLAIDTIGRKELIGSGG 439
Query: 513 IIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPF 572
I++ + S G K LP L RG V+DPS G + +
Sbjct: 440 IVDQSLSLGGGGHVTFMEKCFKEVNLQDYHLPNALKKRG--VDDPSKLPG-------FYY 490
Query: 573 AKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVG---HADKKDEPWWP 629
DGL LW+A++ ++ + + +Y N V+ D E++SW ++ G + +D
Sbjct: 491 RDDGLALWEAIETFIGEIIAIFYKNDDDVKRDNEIQSWIYDVHKNGWRVNPGHQDHGVPA 550
Query: 630 VLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSDEDWKL 689
++ E L +++T++ + S HAAVNF Q G+ PN P + R P K
Sbjct: 551 SFESREQLKEVLTSLVFTFSCQHAAVNFSQKDHYGFTPNAPAILRHPPP---------KK 601
Query: 690 FLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKAAFERF 749
E +L PS+ QA +A + L+ S DE YLG AW D + A RF
Sbjct: 602 KGEATLQSILSTLPSKSQAAKAIATVYILTKFSEDERYLGNYSATAWEDKDALD-AINRF 660
Query: 750 SGRLKELEGIIDERNANENLKNRTGAGMVPYELMKPFSEPGVTG 793
+L+++ I +R NENL+ VPY + P P T
Sbjct: 661 QDKLEDISKKIKQR--NENLE-------VPYIYLLPERIPNGTA 695
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
pdb|2FNQ|B Chain B, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
Length = 699
Score = 180 bits (456), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 148/524 (28%), Positives = 226/524 (43%), Gaps = 69/524 (13%)
Query: 289 TPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELI 348
TP DR W D FG Q L G NP + P +T E +
Sbjct: 225 TPNMADR----WHEDRWFGYQFLNGANPVILTRCDALP------------SNFPVTNEHV 268
Query: 349 EKEIGGIMTVEEAIKQKKLFILDYHDLL----------------LPYVEKVRELKGTTLY 392
+ ++E IK ++I+D+ L+ +P K E
Sbjct: 269 NASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCA 328
Query: 393 GSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDS 452
LF+ G L P+AI++ + P P W TP H W +AK + +S
Sbjct: 329 APLALFYVNKLGHLMPIAIQINQEPGPENPIW----TP--HEENEHDWMMAKFWLGVAES 382
Query: 453 GYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGG 512
+HQL +H LRTH TE + ++T R L++ HP+ +LLQPH + I+ + R+ L+ +GG
Sbjct: 383 NFHQLNTHLLRTHLTTESFALSTWRNLASAHPVFKLLQPHIYGVLAIDTIGRKELIGSGG 442
Query: 513 IIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPF 572
I++ + S G K LP L RG V+DPS G + +
Sbjct: 443 IVDQSLSLGGGGHVTFMEKCFKEVNLQDYHLPNALKKRG--VDDPSKLPG-------FYY 493
Query: 573 AKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVG---HADKKDEPWWP 629
DGL LW+A++ ++ + + +Y N V+ D E++SW ++ G + +D
Sbjct: 494 RDDGLALWEAIETFIGEIIAIFYKNDDDVKRDNEIQSWIYDVHKNGWRVNPGHQDHGVPA 553
Query: 630 VLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSDEDWKL 689
++ E L +++T++ + S HAAVNF Q G+ PN P V R P K
Sbjct: 554 SFESREQLKEVLTSLVFTFSCQHAAVNFSQKDHYGFTPNAPAVLRHPPP---------KK 604
Query: 690 FLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKAAFERF 749
E +L PS+ QA +A + L+ S DE YLG AW D + A RF
Sbjct: 605 KGEATLQSILSTLPSKSQAAKAIATVYILTKFSEDERYLGNYSATAWEDKDALD-AINRF 663
Query: 750 SGRLKELEGIIDERNANENLKNRTGAGMVPYELMKPFSEPGVTG 793
+L+++ I +R NENL+ VPY + P P T
Sbjct: 664 QDKLEDISKKIKQR--NENLE-------VPYIYLLPERIPNGTA 698
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|B Chain B, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|C Chain C, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|D Chain D, Crystal Structure Of Delta413-417:gs I805a Lox
Length = 696
Score = 179 bits (453), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 148/524 (28%), Positives = 225/524 (42%), Gaps = 69/524 (13%)
Query: 289 TPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELI 348
TP DR W D FG Q L G NP + P +T E +
Sbjct: 222 TPNMADR----WHEDRWFGYQFLNGANPVILTRCDALP------------SNFPVTNEHV 265
Query: 349 EKEIGGIMTVEEAIKQKKLFILDYHDLL----------------LPYVEKVRELKGTTLY 392
+ ++E IK ++I+D+ L+ +P K E
Sbjct: 266 NASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCA 325
Query: 393 GSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDS 452
LF+ G L P+AI++ + P P W TP H W +AK + +S
Sbjct: 326 APLALFYVNKLGHLMPIAIQINQEPGPENPIW----TP--HEENEHDWMMAKFWLGVAES 379
Query: 453 GYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGG 512
+HQL +H LRTH TE + ++T R L++ HPI +LLQPH + I+ + R+ L +GG
Sbjct: 380 NFHQLNTHLLRTHLTTESFALSTWRNLASAHPIFKLLQPHIYGVLAIDTIGRKELAGSGG 439
Query: 513 IIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPF 572
I++ + S G K LP L RG V+DPS G + +
Sbjct: 440 IVDQSLSLGGGGHVTFMEKCFKEVNLQDYHLPNALKKRG--VDDPSKLPG-------FYY 490
Query: 573 AKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVG---HADKKDEPWWP 629
DGL LW+A++ ++ + + +Y N V+ D E++SW ++ G + +D
Sbjct: 491 RDDGLALWEAIETFIGEIIAIFYKNDDDVKRDNEIQSWIYDVHKNGWRVNPGHQDHGVPA 550
Query: 630 VLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSDEDWKL 689
++ E L +++T++ + S HAAVNF Q G+ PN P + R P K
Sbjct: 551 SFESREQLKEVLTSLVFTFSCQHAAVNFSQKDHYGFTPNAPAILRHPPP---------KK 601
Query: 690 FLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKAAFERF 749
E +L PS+ QA +A + L+ S DE YLG AW D + A RF
Sbjct: 602 KGEATLQSILSTLPSKSQAAKAIATVYILTKFSEDERYLGNYSATAWEDKDALD-AINRF 660
Query: 750 SGRLKELEGIIDERNANENLKNRTGAGMVPYELMKPFSEPGVTG 793
+L+++ I +R NENL+ VPY + P P T
Sbjct: 661 QDKLEDISKKIKQR--NENLE-------VPYIYLLPERIPNGTA 695
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|B Chain B, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|C Chain C, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|D Chain D, Crystal Structure Of Delta413-417:gs I805w Lox
Length = 696
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 148/524 (28%), Positives = 225/524 (42%), Gaps = 69/524 (13%)
Query: 289 TPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELI 348
TP DR W D FG Q L G NP + P +T E +
Sbjct: 222 TPNMADR----WHEDRWFGYQFLNGANPVILTRCDALP------------SNFPVTNEHV 265
Query: 349 EKEIGGIMTVEEAIKQKKLFILDYHDLL----------------LPYVEKVRELKGTTLY 392
+ ++E IK ++I+D+ L+ +P K E
Sbjct: 266 NASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCA 325
Query: 393 GSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDS 452
LF+ G L P+AI++ + P P W TP H W +AK + +S
Sbjct: 326 APLALFYVNKLGHLMPIAIQINQEPGPENPIW----TP--HEENEHDWMMAKFWLGVAES 379
Query: 453 GYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGG 512
+HQL +H LRTH TE + ++T R L++ HPI +LLQPH + I+ + R+ L +GG
Sbjct: 380 NFHQLNTHLLRTHLTTESFALSTWRNLASAHPIFKLLQPHIYGVLAIDTIGRKELWGSGG 439
Query: 513 IIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPF 572
I++ + S G K LP L RG V+DPS G + +
Sbjct: 440 IVDQSLSLGGGGHVTFMEKCFKEVNLQDYHLPNALKKRG--VDDPSKLPG-------FYY 490
Query: 573 AKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVG---HADKKDEPWWP 629
DGL LW+A++ ++ + + +Y N V+ D E++SW ++ G + +D
Sbjct: 491 RDDGLALWEAIETFIGEIIAIFYKNDDDVKRDNEIQSWIYDVHKNGWRVNPGHQDHGVPA 550
Query: 630 VLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSDEDWKL 689
++ E L +++T++ + S HAAVNF Q G+ PN P + R P K
Sbjct: 551 SFESREQLKEVLTSLVFTFSCQHAAVNFSQKDHYGFTPNAPAILRHPPP---------KK 601
Query: 690 FLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKAAFERF 749
E +L PS+ QA +A + L+ S DE YLG AW D + A RF
Sbjct: 602 KGEATLQSILSTLPSKSQAAKAIATVYILTKFSEDERYLGNYSATAWEDKDALD-AINRF 660
Query: 750 SGRLKELEGIIDERNANENLKNRTGAGMVPYELMKPFSEPGVTG 793
+L+++ I +R NENL+ VPY + P P T
Sbjct: 661 QDKLEDISKKIKQR--NENLE-------VPYIYLLPERIPNGTA 695
>pdb|3RDE|A Chain A, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
pdb|3RDE|B Chain B, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
pdb|3RDE|C Chain C, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
pdb|3RDE|D Chain D, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
Length = 573
Score = 162 bits (410), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 147/495 (29%), Positives = 216/495 (43%), Gaps = 60/495 (12%)
Query: 294 DRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIG 353
+R + W D FG Q L G NP +R E P R + PP + +EKE+
Sbjct: 127 ERVRDSWKEDALFGYQFLNGTNPMLLRHSVELPAR------LKFPPGMEELQAQLEKELQ 180
Query: 354 GIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIEL 413
G LF D+ LL V L + P G L P+ I+L
Sbjct: 181 G----------GTLFEADF-SLLDGIKANVILSSQQYLAVPLVMLKLQPDGKLLPMVIQL 229
Query: 414 TRPPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYII 473
+ P +G P +F P + +W LAK V + D H+L SH LR H E +
Sbjct: 230 -QLPREGSP-LPPLFLP---TDPPMVWLLAKCWVRSSDFQLHELHSHLLRGHLMAEVIAV 284
Query: 474 ATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIE---STFSPGKYSMELSSV 530
AT R L ++HPI +LL PHFRYTMEIN AR LV+ GI + ST G + +
Sbjct: 285 ATMRCLPSIHPIFKLLIPHFRYTMEINVRARNGLVSDLGIFDQVVSTGGGGHVELLRRAA 344
Query: 531 AYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPFAKDGLDLWDALKQWVTDF 590
A + F P DL RG+ L +E +A+D L LW+ + ++V
Sbjct: 345 ALLTYSSF---CPPDDLADRGL------------LGVESSFYAQDALRLWEVISRYVEGI 389
Query: 591 VNHYYPNPSSVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPEDLIDIITTIAWVASG 650
V+ +Y SV+ D EL++W E +G +D + L++ E L +T + +G
Sbjct: 390 VSLHYKTDESVKEDFELQAWCREFTEIGLLGAQDRGFPVSLQSKEQLCHFVTMCIFTCTG 449
Query: 651 HHAAVNFGQYTFGGYFPNRPTVARTKMPIEDPSDEDWKLFLEKPEDVLLQCFPSQIQATT 710
H++ + GQ + + PN P R + P+ +D L + ++ P+ QA+
Sbjct: 450 QHSSNHLGQLDWYTWVPNAPCTMR----LPPPTTKDATL------ETVMATLPNFHQASL 499
Query: 711 VMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKAAFERFSGRLKELEGIIDERNANENLK 770
M+I L P LG Q E+ + P KA +F L L+ I+ RNA L
Sbjct: 500 QMSITWQLGRCQPTMVALG-QHEEEYFSGPGPKAVLTKFREELAALDKDIEVRNAKLAL- 557
Query: 771 NRTGAGMVPYELMKP 785
PYE ++P
Sbjct: 558 --------PYEYLRP 564
>pdb|1LOX|A Chain A, Rabbit Reticulocyte 15-Lipoxygenase
Length = 662
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 135/490 (27%), Positives = 213/490 (43%), Gaps = 62/490 (12%)
Query: 300 WFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVE 359
W D FG Q L G NP +R + P R PP + +EKE+
Sbjct: 222 WQEDSLFGYQFLNGANPMLLRRSVQLPARLVF------PPGMEELQAQLEKEL------- 268
Query: 360 EAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMD 419
K LF D+ LL V L + P G L P+ I+L P +
Sbjct: 269 ---KAGTLFEADFA-LLDNIKANVILYCQQYLAAPLVMLKLQPDGKLMPMVIQLHLPKIG 324
Query: 420 GKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQL 479
P +F P+ +W LAK V + D H+L SH LR H E + +AT R L
Sbjct: 325 SSP--PPLFLPT---DPPMVWLLAKCWVRSSDFQVHELNSHLLRGHLMAEVFTVATMRCL 379
Query: 480 SAMHPINRLLQPHFRYTMEINALAREALVNAGGI---IESTFSPGKYSMELSSVAYDKHW 536
++HP+ +L+ PH RYT+EIN AR LV+ GI I ST G + + A+ +
Sbjct: 380 PSIHPVFKLIVPHLRYTLEINVRARNGLVSDFGIFDQIMSTGGGGHVQLLQQAGAFLTYR 439
Query: 537 RFDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPFAKDGLDLWDALKQWVTDFVNHYYP 596
F P DL RG+ L +E +A+D L LW+ + ++V + YY
Sbjct: 440 SF---CPPDDLADRGL------------LGVESSFYAQDALRLWEIISRYVQGIMGLYYK 484
Query: 597 NPSSVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPEDLIDIITTIAWVASGHHAAVN 656
+V D EL+SW EI +G + + + L++ +T + +G H++++
Sbjct: 485 TDEAVRDDLELQSWCREITEIGLQGAQKQGFPTSLQSVAQACHFVTMCIFTCTGQHSSIH 544
Query: 657 FGQYTFGGYFPNRPTVARTKMPIEDPSDEDWKLFLEKPEDVLLQCFPSQIQATTVMAILD 716
GQ + + PN P R + P+ +D L + ++ P+ Q++ M+I+
Sbjct: 545 LGQLDWFTWVPNAPCTMR----LPPPTTKDATL------ETVMATLPNLKQSSLQMSIVW 594
Query: 717 TLSSHSPDEEYLGKQMEQAW-GDDPVIKAAFERFSGRLKELEGIIDERNANENLKNRTGA 775
L P LG+ E+ + G +P +A E+F L ++ I+ RN +
Sbjct: 595 QLGRDQPIMVPLGQHQEEYFSGPEP--RAVLEKFREELAIMDKEIEVRNEKLD------- 645
Query: 776 GMVPYELMKP 785
+PYE ++P
Sbjct: 646 --IPYEYLRP 653
>pdb|2P0M|A Chain A, Revised Structure Of Rabbit Reticulocyte 15s-Lipoxygenase
pdb|2P0M|B Chain B, Revised Structure Of Rabbit Reticulocyte 15s-Lipoxygenase
Length = 662
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 135/490 (27%), Positives = 213/490 (43%), Gaps = 62/490 (12%)
Query: 300 WFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVE 359
W D FG Q L G NP +R + P R PP + +EKE+
Sbjct: 222 WQEDSLFGYQFLNGANPMLLRRSVQLPARLVF------PPGMEELQAQLEKEL------- 268
Query: 360 EAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMD 419
K LF D+ LL V L + P G L P+ I+L P +
Sbjct: 269 ---KAGTLFEADFA-LLDNIKANVILYCQQYLAAPLVMLKLQPDGKLMPMVIQLHLPKIG 324
Query: 420 GKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQL 479
P +F P+ +W LAK V + D H+L SH LR H E + +AT R L
Sbjct: 325 SSP--PPLFLPT---DPPMVWLLAKCWVRSSDFQVHELNSHLLRGHLMAEVFTVATMRCL 379
Query: 480 SAMHPINRLLQPHFRYTMEINALAREALVNAGGI---IESTFSPGKYSMELSSVAYDKHW 536
++HP+ +L+ PH RYT+EIN AR LV+ GI I ST G + + A+ +
Sbjct: 380 PSIHPVFKLIVPHLRYTLEINVRARNGLVSDFGIFDQIMSTGGGGHVQLLQQAGAFLTYR 439
Query: 537 RFDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPFAKDGLDLWDALKQWVTDFVNHYYP 596
F P DL RG+ L +E +A+D L LW+ + ++V + YY
Sbjct: 440 SF---CPPDDLADRGL------------LGVESSFYAQDALRLWEIISRYVQGIMGLYYK 484
Query: 597 NPSSVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPEDLIDIITTIAWVASGHHAAVN 656
+V D EL+SW EI +G + + + L++ +T + +G H++++
Sbjct: 485 TDEAVRDDLELQSWCREITEIGLQGAQKQGFPTSLQSVAQACHFVTMCIFTCTGQHSSIH 544
Query: 657 FGQYTFGGYFPNRPTVARTKMPIEDPSDEDWKLFLEKPEDVLLQCFPSQIQATTVMAILD 716
GQ + + PN P R + P+ +D L + ++ P+ Q++ M+I+
Sbjct: 545 LGQLDWFTWVPNAPCTMR----LPPPTTKDATL------ETVMATLPNLHQSSLQMSIVW 594
Query: 717 TLSSHSPDEEYLGKQMEQAW-GDDPVIKAAFERFSGRLKELEGIIDERNANENLKNRTGA 775
L P LG+ E+ + G +P +A E+F L ++ I+ RN +
Sbjct: 595 QLGRDQPIMVPLGQHQEEYFSGPEP--RAVLEKFREELAIMDKEIEVRNEKLD------- 645
Query: 776 GMVPYELMKP 785
+PYE ++P
Sbjct: 646 --IPYEYLRP 653
>pdb|3D3L|A Chain A, The 2.6 A Crystal Structure Of The Lipoxygenase Domain Of
Human Arachidonate 12-Lipoxygenase, 12s-Type (Casp
Target)
pdb|3D3L|B Chain B, The 2.6 A Crystal Structure Of The Lipoxygenase Domain Of
Human Arachidonate 12-Lipoxygenase, 12s-Type (Casp
Target)
Length = 541
Score = 149 bits (375), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 138/488 (28%), Positives = 199/488 (40%), Gaps = 57/488 (11%)
Query: 300 WFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVE 359
W DE F Q L G NP +R T P R L P + +EKE+
Sbjct: 68 WQDDELFSYQFLNGANPMLLRRSTSLPSRLVL------PSGMEELRAQLEKEL------- 114
Query: 360 EAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFF--SYPSGTLRPLAIELTRPP 417
+ LF D+ +LL + ++G Y + L P+G L+P+ I++
Sbjct: 115 ---QNGSLFEADF--ILLDGI-PANVIRGEKQYLAAPLVMLKMEPNGKLQPMVIQIQP-- 166
Query: 418 MDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNR 477
+ +F PS W LAK+ V D H++ H L TH E +AT R
Sbjct: 167 PNPSSPTPTLFLPSDPPLA---WLLAKSWVRNSDFQLHEIQYHLLNTHLVAEVIAVATMR 223
Query: 478 QLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWR 537
L +HPI + L PH RYTMEIN AR L++ GGI + S G
Sbjct: 224 CLPGLHPIFKFLIPHIRYTMEINTRARTQLISDGGIFDKAVSTGGGGHVQLLRRAAAQLT 283
Query: 538 FDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPN 597
+ P DL RG+ L + +A D L LW+ + ++V V+ +Y
Sbjct: 284 YCSLCPPDDLADRGL------------LGLPGALYAHDALRLWEIIARYVEGIVHLFYQR 331
Query: 598 PSSVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPEDLIDIITTIAWVASGHHAAVNF 657
V+ D EL++W EI VG +D + ++ L +T + + HAA+N
Sbjct: 332 DDIVKGDPELQAWCREITEVGLCQAQDRGFPVSFQSQSQLCHFLTMCVFTCTAQHAAINQ 391
Query: 658 GQYTFGGYFPNRPTVARTKMPIEDPSDEDWKLFLEKPEDVLLQCFPSQIQATTVMAILDT 717
GQ + + PN P R P + ED + ++ P QA MAI
Sbjct: 392 GQLDWYAWVPNAPCTMRMPPPT---TKEDVTM------ATVMGSLPDVRQACLQMAISWH 442
Query: 718 LSSHSPDEEYLGKQMEQAWGDDPVIKAAFERFSGRLKELEGIIDERNANENLKNRTGAGM 777
LS PD LG E+ + P KA +F L++LE I RN +
Sbjct: 443 LSRRQPDMVPLGHHKEK-YFSGPKPKAVLNQFRTDLEKLEKEITARNEQLDW-------- 493
Query: 778 VPYELMKP 785
PYE +KP
Sbjct: 494 -PYEYLKP 500
>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 263
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 340 ESA-ITKELIEKEIG---GIMTVEEAIKQKKLFILDYHDLLLPYVEKVREL 386
ESA +TK+ + EIG GI+T E A KK+++++ L PY K++EL
Sbjct: 15 ESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL 65
>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 265
Score = 33.5 bits (75), Expect = 0.49, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 340 ESA-ITKELIEKEIG---GIMTVEEAIKQKKLFILDYHDLLLPYVEKVREL 386
ESA +TK+ + EIG GI+T E A KK+++++ L PY K++EL
Sbjct: 17 ESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL 67
>pdb|2KOD|A Chain A, A High-Resolution Nmr Structure Of The Dimeric C-Terminal
Domain Of Hiv-1 Ca
pdb|2KOD|B Chain B, A High-Resolution Nmr Structure Of The Dimeric C-Terminal
Domain Of Hiv-1 Ca
Length = 88
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 577 LDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPED 636
LD+ K+ D+V+ +Y + ++ +E+++W TE V +A+ + L
Sbjct: 8 LDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAAT 67
Query: 637 LIDIITTIAWVAS-GHHAAV 655
L +++T V GH A V
Sbjct: 68 LEEMMTACQGVGGPGHKARV 87
>pdb|1A43|A Chain A, Structure Of The Hiv-1 Capsid Protein Dimerization Domain
At 2.6a Resolution
Length = 87
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 577 LDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPED 636
LD+ K+ D+V+ +Y + ++ +E+++W TE V +A+ + L
Sbjct: 7 LDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGAT 66
Query: 637 LIDIITTIAWVAS-GHHAAV 655
L +++T V GH A V
Sbjct: 67 LEEMMTACQGVGGPGHKARV 86
>pdb|3DS0|A Chain A, Hiv-1 Capsid C-Terminal Domain Mutant (N183a) In Complex
With An Inhibitor Of Particle Assembly (Cai)
pdb|3DS5|A Chain A, Hiv-1 Capsid C-Terminal Domain Mutant (N183a)
pdb|3DS5|B Chain B, Hiv-1 Capsid C-Terminal Domain Mutant (N183a)
pdb|3DS5|C Chain C, Hiv-1 Capsid C-Terminal Domain Mutant (N183a)
pdb|3DS5|D Chain D, Hiv-1 Capsid C-Terminal Domain Mutant (N183a)
Length = 86
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 577 LDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPED 636
LD+ K+ D+V+ +Y + ++ +E+++W TE V +A+ + L
Sbjct: 6 LDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKAWMTETLLVQNANPDCKTILKALGPGAT 65
Query: 637 LIDIITTIAWVAS-GHHAAV 655
L +++T V GH A V
Sbjct: 66 LEEMMTACQGVGGPGHKARV 85
>pdb|2BUO|A Chain A, Hiv-1 Capsid C-Terminal Domain In Complex With An
Inhibitor Of Particle Assembly
pdb|3LRY|A Chain A, Crystal Structure Of Synthetic Hiv-1 Capsid C-Terminal
Domain (Cca)
pdb|3LRY|B Chain B, Crystal Structure Of Synthetic Hiv-1 Capsid C-Terminal
Domain (Cca)
pdb|2XT1|A Chain A, Crystal Structure Of The Hiv-1 Capsid Protein C-Terminal
Domain (146-231) In Complex With A Camelid Vhh
Length = 86
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 577 LDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPED 636
LD+ K+ D+V+ +Y + ++ +E+++W TE V +A+ + L
Sbjct: 6 LDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGAT 65
Query: 637 LIDIITTIAWVAS-GHHAAV 655
L +++T V GH A V
Sbjct: 66 LEEMMTACQGVGGPGHKARV 85
>pdb|1BAJ|A Chain A, Hiv-1 Capsid Protein C-Terminal Fragment Plus Gag P2
Domain
Length = 101
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 577 LDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPED 636
LD+ K+ D+V+ +Y + ++ +E+++W TE V +A+ + L
Sbjct: 7 LDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGAT 66
Query: 637 LIDIITTIAWVAS-GHHAAV 655
L +++T V GH A V
Sbjct: 67 LEEMMTACQGVGGPGHKARV 86
>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Homocysteine And Methanocaldococcus Jannaschi Dim1.
pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
Methanocaldococcus Jannaschi Dim1
pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
Methanocaldococcus Jannaschi Dim1
pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Methionine And Methanocaldococcus Jannaschi Dim1
Length = 295
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 340 ESA-ITKELIEKEIG---GIMTVEEAIKQKKLFILDYHDLLLPYVEKVREL 386
ESA +TK+ + EIG GI+T E A KK+++++ L PY K++EL
Sbjct: 44 ESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL 94
>pdb|2OYZ|A Chain A, Crystal Structure Of Unknown Function Protein Vpa0057 From
Vibrio Parahaemolyticus (Targeted Domain 2-94)
Length = 94
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 658 GQYTFGGYFPNRPTVARTKMPIEDPSDEDWKLF 690
G+YTFG P R TV + + ++ + DW +
Sbjct: 33 GEYTFGTQAPERXTVVKGALVVKRVGEADWTTY 65
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 156 CSELARPVLGGKEHPYPRRCRTGR-----PPCETDPASESRTLINYVPRDEAFSEIKQLQ 210
+E A VL ++H P + + G P E AS +T+ + + R +IK +
Sbjct: 404 LAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKR----KKIKPVS 459
Query: 211 FSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTIL 270
S S + + D + Y D + N+GV + +T + + W T+
Sbjct: 460 LSKMNFASQVFKTEHEKQVKEADYIITGSYVVKNDPVVNDGV---IDDTISDSSKWATVF 516
Query: 271 PRLV 274
PR V
Sbjct: 517 PRAV 520
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 156 CSELARPVLGGKEHPYPRRCRTGR-----PPCETDPASESRTLINYVPRDEAFSEIKQLQ 210
+E A VL ++H P + + G P E AS +T+ + + R +IK +
Sbjct: 434 LAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKR----KKIKPVS 489
Query: 211 FSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTIL 270
S S + + D + Y D + N+GV + +T + + W T+
Sbjct: 490 LSKMNFASQVFKTEHEKQVKEADYIITGSYVVKNDPVVNDGV---IDDTISDSSKWATVF 546
Query: 271 PRLV 274
PR V
Sbjct: 547 PRAV 550
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 156 CSELARPVLGGKEHPYPRRCRTGR-----PPCETDPASESRTLINYVPRDEAFSEIKQLQ 210
+E A VL ++H P + + G P E AS +T+ + + R +IK +
Sbjct: 430 LAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKR----KKIKPVS 485
Query: 211 FSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTIL 270
S S + + D + Y D + N+GV + +T + + W T+
Sbjct: 486 LSKMNFASQVFKTEHEKQVKEADYIITGSYVVKNDPVVNDGV---IDDTISDSSKWATVF 542
Query: 271 PRLV 274
PR V
Sbjct: 543 PRAV 546
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,470,674
Number of Sequences: 62578
Number of extensions: 1272779
Number of successful extensions: 2995
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2802
Number of HSP's gapped (non-prelim): 46
length of query: 802
length of database: 14,973,337
effective HSP length: 107
effective length of query: 695
effective length of database: 8,277,491
effective search space: 5752856245
effective search space used: 5752856245
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)