BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003700
(802 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FGE|A Chain A, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
pdb|2FGE|B Chain B, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
Length = 995
Score = 928 bits (2398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/598 (74%), Positives = 504/598 (84%)
Query: 205 EASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEG 264
EAS NTIEFSLRENNTGSFPRGLSL L+S+ KWIYD +PFEPLKY +PL ALK R+AEEG
Sbjct: 398 EASXNTIEFSLRENNTGSFPRGLSLXLQSISKWIYDXDPFEPLKYTEPLKALKTRIAEEG 457
Query: 265 SKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARA 324
SKAVFSPLIEK ILNN H VT+E QPDPEKA+++E EK IL KVK++ T+EDLAELARA
Sbjct: 458 SKAVFSPLIEKLILNNSHRVTIEXQPDPEKATQEEVEEKNILEKVKAAXTEEDLAELARA 517
Query: 325 TEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYT 384
TEEL+LKQETPDPPEALR VPSL+L DIPKEP VPTEVGDINGVKVL+HDLFTND++YT
Sbjct: 518 TEELKLKQETPDPPEALRCVPSLNLGDIPKEPTYVPTEVGDINGVKVLRHDLFTNDIIYT 577
Query: 385 EVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGK 444
EVVFD+ SLK ELLPL+PLFCQSL E GTKDL+FVQL+QLIGRKTGGISVYP TSS+ GK
Sbjct: 578 EVVFDIGSLKHELLPLVPLFCQSLLEXGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGK 637
Query: 445 EDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGH 504
++PC ++VRGK+ AG+A+DLFNL NC+LQEVQ TDQQRFKQFVSQS+AR ENRLRGSGH
Sbjct: 638 DEPCSKIIVRGKSXAGRADDLFNLXNCLLQEVQFTDQQRFKQFVSQSRARXENRLRGSGH 697
Query: 505 GIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREG 564
GIAAAR DA LN AGW SEQ GG+SYLEFL LE+KVD+DW GISSSLEEIRRS L+R G
Sbjct: 698 GIAAARXDAXLNIAGWXSEQXGGLSYLEFLHTLEKKVDEDWEGISSSLEEIRRSLLARNG 757
Query: 565 CLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKA 624
C++N TADGK+L N E+ V KFLD+LP N V W LP NEAIVIPTQVNYVGKA
Sbjct: 758 CIVNXTADGKSLTNVEKSVAKFLDLLPENPSGGLVTWDGRLPLRNEAIVIPTQVNYVGKA 817
Query: 625 ANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVFSFLSYRDPNL 684
NI+ TGY+L+GSAYVISKHISN WLWDRVRVSGGAYGGFCDFDSHSGVFS+LSYRDPNL
Sbjct: 818 GNIYSTGYELDGSAYVISKHISNTWLWDRVRVSGGAYGGFCDFDSHSGVFSYLSYRDPNL 877
Query: 685 LKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAYQLPDAKGYSSLLRHLLGITXXX 744
LKTLDIYDGT DFLR L++D +TLTKAIIGTIGDVD+YQLPDAKGYSSLLRHLLG+T
Sbjct: 878 LKTLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDVDSYQLPDAKGYSSLLRHLLGVTDEE 937
Query: 745 XXXXXXXILSTSLKDFKEFADVLEAIKDRGXXXXXXXXXXXXXXNKERANLFEVKKAL 802
IL+TSLKDFK+FA ++ ++D+G N ER+N FEVKKAL
Sbjct: 938 RQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAVASAEDIDAANNERSNFFEVKKAL 995
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 179/204 (87%), Positives = 193/204 (94%)
Query: 2 SVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNA 61
SVSN+DENKVFG+VFRTPPKDSTGIPHIL+HSVLCGSRKYP+KEPFVELLKGSL+TFLNA
Sbjct: 51 SVSNEDENKVFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNA 110
Query: 62 FTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITY 121
FTYPDRTCYPVASTNTKDFYNLVDVY DAVFFPKCV+D TFQQEGWH++L++PSEDI+Y
Sbjct: 111 FTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISY 170
Query: 122 KGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYY 181
KGVVFNE KGVYSQPDNILGR AQQAL P+N YGVDSGGDPK IP LTFEEFKEFHR+YY
Sbjct: 171 KGVVFNEXKGVYSQPDNILGRIAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYY 230
Query: 182 HPSNARIWFYGDDDPNERLRILSE 205
HPSNARIWFYGDDDP RLR+LSE
Sbjct: 231 HPSNARIWFYGDDDPVHRLRVLSE 254
>pdb|3S5H|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5I|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5K|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5M|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
Length = 1193
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 124/213 (58%), Gaps = 14/213 (6%)
Query: 7 DENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPD 66
D + F +T GIPHILEHSVL GS+ Y K L KG+L+T LNA+T+ D
Sbjct: 108 DVEQAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFND 167
Query: 67 RTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSED-------- 118
RT Y S N KDF+N++ VY D+VF P +E+ F+ EGW ++++ ED
Sbjct: 168 RTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIP 227
Query: 119 ------ITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEE 172
+++ G+V+NEMKG S P L + +FPDN + +SGGDPK I LT+EE
Sbjct: 228 QMKDYKVSFNGIVYNEMKGALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEE 287
Query: 173 FKEFHRKYYHPSNARIWFYGDDDPNERLRILSE 205
FKEF+ K Y+P +++F+ ++P E L + +
Sbjct: 288 FKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQ 320
Score = 145 bits (366), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 160/660 (24%), Positives = 271/660 (41%), Gaps = 100/660 (15%)
Query: 205 EASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEG 264
EAS+N IEF L+E N + + + + K Y+ +P ++EK L +K ++ E
Sbjct: 504 EASINNIEFILKEANLKT-SKSIDFVFEMTSKLNYNRDPLLIFEFEKYLNIVKNKIKNEP 562
Query: 265 SKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARA 324
+EK+ +NN H + ++ D A E EK+ L K + +++ ++ +
Sbjct: 563 --MYLEKFVEKHFINNAHRSVILLEGDENYAQEQENLEKQELKKRIENFNEQEKEQVIKN 620
Query: 325 TEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEV------------GDINGVKVL 372
EEL + + PE L P +S+ D+ K+ + VP V N +K
Sbjct: 621 FEELSKYKNAEESPEHLNKFPIISISDLNKKTLEVPVNVYFTNINENNNIMETYNKLKTN 680
Query: 373 QHDLFTN-DVLYTEVVF-----------------DMSSLKQELLPLIPLFCQSLKEMGTK 414
+H L N DV + V D S + + +P+ + G
Sbjct: 681 EHMLKDNMDVFLKKYVLKNDKHNTNNNNNNNNNMDYSFTETKYEGNVPILVYEMPTTGIV 740
Query: 415 DLSFV-QLDQLIGRKTGGISVYPFTSSIHGKEDPCCC---MVVRGKAMAG---------- 460
L FV LD L + ++++ T + K + +++R K +
Sbjct: 741 YLQFVFSLDHLTVDELAYLNLFK-TLILENKTNKRSSEDFVILREKNIGSMSANVALYSK 799
Query: 461 ----------QAEDLFNL------------FNCVLQEVQLTDQQRFKQFVSQSKAR---M 495
A+ LFNL N L+ V+ +D K+ + K + M
Sbjct: 800 DDHLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGM 859
Query: 496 ENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEI 555
+ G+ I + A LN+ + + G LQ E + D+ + + L I
Sbjct: 860 KTTFSEKGYAILMKYVKAHLNSKHYAHNIIYGYENYLKLQEQLELAENDFKTLENILVRI 919
Query: 556 RRSFLSREGCLINMTADGKNLK----NSERFVGKFLDMLPTNSP-VERVKWKAHLPSA-- 608
R +++ ++++T+D LK NS + + N + ++ K + P+
Sbjct: 920 RNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEENDKYINDMQNKVNDPTVMG 979
Query: 609 -NEAI----------------VIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLW 651
NE I V+PT VN V + +F+ G L+ S VI + N +LW
Sbjct: 980 WNEEIKSKKLFDEEKVKKEFFVLPTFVNSVSMSGILFKPGEYLDPSFTVIVAALKNSYLW 1039
Query: 652 DRVRVSGGAYGGFCDFDSHSGVFSFLSYRDPNLLKTLDIYDGTVDFLREL--EMDDDTLT 709
D VR GAYG F D + + G FLS RDPNL KTL + + LR++ M ++ L
Sbjct: 1040 DTVRGLNGAYGVFADIE-YDGSVVFLSARDPNLEKTLATFRESAKGLRKMADTMTENDLL 1098
Query: 710 KAIIGTIGDVDAYQLPDAKGYSSLLRHLLGITXXXXXXXXXXILSTSLKDFKEFADVLEA 769
+ II TIG +D + S LR + + I++T +DF +FAD+LE+
Sbjct: 1099 RYIINTIGTIDKPRRGIELSKLSFLRLISNESEQDRVEFRKRIMNTKKEDFYKFADLLES 1158
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 64/167 (38%), Gaps = 29/167 (17%)
Query: 17 RTPPKDSTGIPHILEHSVLCGSRKYPLKE--PFVELLKGSLNTFLNAFTYPDRTCYPVAS 74
R + GI H LEH G+ +E F + + G +N AFT + TCY A
Sbjct: 35 RYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVN----AFTSKEYTCY-YAK 89
Query: 75 TNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYS 134
+D D F TFQ+E +L+ + VVF E+K V
Sbjct: 90 VLDDHAGQAIDTLSDMFFHS-------TFQKE----ELEKE------RKVVFEEIKMVDD 132
Query: 135 QPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYY 181
PD+I+ L YG S G P + T F E ++Y
Sbjct: 133 TPDDIV-----HDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHY 174
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 20 PKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKD 79
P+ G+ H LEH L GS+KYP + E LK + NA T P RT + + N
Sbjct: 57 PEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSH-NASTAPYRTAFYLEVENDA- 114
Query: 80 FYNLVDVYFDAVFFP 94
VD DA+ P
Sbjct: 115 LPGAVDRLADAIAEP 129
>pdb|3GWB|A Chain A, Crystal Structure Of Peptidase M16 Inactive Domain From
Pseudomonas Fluorescens. Northeast Structural Genomics
Target Plr293l
pdb|3GWB|B Chain B, Crystal Structure Of Peptidase M16 Inactive Domain From
Pseudomonas Fluorescens. Northeast Structural Genomics
Target Plr293l
Length = 434
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 148 LFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGD 193
L+ + Y S GD K IP +T + K FH K Y N I GD
Sbjct: 159 LYGTHPYAHASDGDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGD 204
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 20 PKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCY 70
P + G+ H LEH + G++KYP + + + L + NAFT + T Y
Sbjct: 71 PPNIAGLSHFLEHMLFLGTKKYPKENEYSQFLSEHAGS-SNAFTSGEHTNY 120
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 20 PKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCY 70
P + G+ H L+H + G++KYP + + + L + NAFT + T Y
Sbjct: 71 PPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGS-SNAFTSGEHTNY 120
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 20 PKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCY 70
P + G+ H L+H + G++KYP + + + L + NAFT + T Y
Sbjct: 71 PPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGS-SNAFTSGEHTNY 120
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 20 PKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCY 70
P + G+ H L+H + G++KYP + + + L + NAFT + T Y
Sbjct: 58 PPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGS-SNAFTSGEHTNY 107
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 20 PKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCY 70
P + G+ H L+H + G++KYP + + + L + NAFT + T Y
Sbjct: 100 PPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGS-SNAFTSGEHTNY 149
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 20 PKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCY 70
P + G+ H L+H + G++KYP + + + L + NAFT + T Y
Sbjct: 71 PPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGS-SNAFTSGEHTNY 120
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 23 STGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCY--PVASTNTKDF 80
+TG+ H LEH + G++ E F + + ++ NAFT D T Y V S+ D
Sbjct: 46 TTGVAHALEHMMFKGTKDVGPGE-FSKRV-AAMGGRDNAFTTRDYTAYYQQVPSSRLSDV 103
Query: 81 YNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNIL 140
L +A V D + F++E + +E+ ++ +P +
Sbjct: 104 MGL-----EADRMANLVVDDELFKKE-----IQVIAEERRWR---------TDDKPRSKA 144
Query: 141 GRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGD 193
A A + + Y V G I +T ++ +++++++Y P+NA + GD
Sbjct: 145 YEALMAASYVAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGD 197
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 23 STGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCY--PVASTNTKDF 80
+TG+ H LEH + G++ E F + + ++ NAFT D T Y V S+ D
Sbjct: 46 TTGVAHALEHMMFKGTKDVGPGE-FSKRV-AAMGGRDNAFTTRDYTAYYQQVPSSRLSDV 103
Query: 81 YNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNIL 140
L +A V D + F++E + +E+ ++ +P +
Sbjct: 104 MGL-----EADRMANLVVDDELFKKE-----IQVIAEERRWR---------TDDKPRSKA 144
Query: 141 GRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGD 193
A A + + Y V G I +T ++ +++++++Y P+NA + GD
Sbjct: 145 YEALMAASYVAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGD 197
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
pdb|3EOQ|B Chain B, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
Length = 406
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 96/267 (35%), Gaps = 32/267 (11%)
Query: 17 RTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTN 76
R K+ +G+ H LEH V G V NAFT + T Y +
Sbjct: 35 RDETKEESGVSHFLEHXVFKGPEDXDALA--VNRAFDRXGAQYNAFTSEEATVY-YGAVL 91
Query: 77 TKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQP 136
+ Y+L+ ++ + EDFQT K V+ E+ +P
Sbjct: 92 PEFAYDLLGLFAKLLRPALREEDFQT------------------EKLVILEEIARYQDRP 133
Query: 137 DNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDP 196
A+ F + G G + I LT E +HR+ Y P N + G D
Sbjct: 134 GFXAYEWARARFFQGHPLGNSVLGTRESITALTREGXAAYHRRRYLPKNXVLAATGRVDF 193
Query: 197 NERLRILSEASMNTIEFSLRENNTGSFPR----GLSLMLRSMGKWIYDMNPFEPLKYEK- 251
+ R+L+EA T + E P G+ + +Y + F + Y++
Sbjct: 194 D---RLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYEKARALYLVALFPGVAYQEE 250
Query: 252 ---PLMALKARLAEEGSKAVFSPLIEK 275
P L L EEGS + L++K
Sbjct: 251 ARFPGQVLAHLLGEEGSGRLHFALVDK 277
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 20 PKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCY 70
P + G+ H EH + G++KYP + + + L + NAFT + T Y
Sbjct: 71 PPNIAGLSHFCEHMLFLGTKKYPKENEYSQFLSEHAGS-SNAFTSGEHTNY 120
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 20 PKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCY 70
P + G+ H EH + G++KYP + + + L + NAFT + T Y
Sbjct: 59 PPNIPGLSHFCEHMLFLGTKKYPKENEYSQFLSEHAGS-SNAFTSGEHTNY 108
>pdb|3AMJ|B Chain B, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|D Chain D, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 424
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 15/101 (14%)
Query: 129 MKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARI 188
++ +QP +ILGR + + + YG S + K++ ++ FHR +Y A +
Sbjct: 135 LREAQTQPGSILGRRFTELAYGKHPYGHVS--SVATLQKISRDQLVSFHRTHYVARTAVV 192
Query: 189 WFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFPRGLSL 229
GD ++ A TI L T P G +L
Sbjct: 193 TLVGD---------ITRAEAETIAQQL----TADLPAGATL 220
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 20 PKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCY 70
P + G+ H EH + G++KYP + + + L + NAFT + T Y
Sbjct: 100 PPNIPGLSHFCEHMLFLGTKKYPKENEYSQFLSEHAGS-SNAFTSGEHTNY 149
>pdb|4DNR|A Chain A, Crystal Structure Of The Cusba Heavy-metal Efflux Complex
From Escherichia Coli, E716f Mutant
Length = 1054
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 286 VEMQPDPEKASRDEAAEKEI----LAKVKSSMTKEDLAELARATEELRLKQETPDPPEAL 341
+ ++ + EKA+R ++ + V +M E + +AR LR Q D P+AL
Sbjct: 731 INVEINREKAARYGMTVADVQLFVTSAVGGAMVGETVEGIARYPINLRYPQSWRDSPQAL 790
Query: 342 RSVPSLSLRDIPKEPIRVPTEVGDINGVKV 371
R +P L+ P++ + D+ +KV
Sbjct: 791 RQLPILT-------PMKQQITLADVADIKV 813
>pdb|3K07|A Chain A, Crystal Structure Of Cusa
pdb|3KSO|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
Cusa
pdb|3KSS|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
Cusa
pdb|3K0I|A Chain A, Crystal Structure Of Cu(I)cusa
Length = 1055
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 267 AVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEI----LAKVKSSMTKEDLAELA 322
V S L E+ L + VE+ + EKA+R ++ + V +M E + +A
Sbjct: 717 GVASALAER--LEGGRYINVEI--NREKAARYGMTVADVQLFVTSAVGGAMVGETVEGIA 772
Query: 323 RATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKV 371
R LR Q D P+ALR +P L+ P++ + D+ +KV
Sbjct: 773 RYPINLRYPQSWRDSPQALRQLPILT-------PMKQQITLADVADIKV 814
>pdb|4DOP|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, R Mutant
Length = 1054
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 268 VFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEI----LAKVKSSMTKEDLAELAR 323
V S L E+ L + VE+ + EKA+R ++ + V +M E + +AR
Sbjct: 717 VASALAER--LEGGRYINVEI--NREKAARYGMTVADVQLFVTSAVGGAMVGETVEGIAR 772
Query: 324 ATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKV 371
LR Q D P+ALR +P L+ P++ + D+ +KV
Sbjct: 773 YPINLRYPQSWRDSPQALRQLPILT-------PMKQQITLADVADIKV 813
>pdb|3T51|A Chain A, Crystal Structures Of The Pre-Extrusion And Extrusion
States Of The Cusba Adaptor-Transporter Complex
pdb|3T53|A Chain A, Crystal Structures Of The Extrusion State Of The Cusba
Adaptor- Transporter Complex
pdb|3T56|A Chain A, Crystal Structure Of The Pre-Extrusion State Of The Cusba
Adaptor- Transporter Complex
Length = 1054
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 267 AVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEI----LAKVKSSMTKEDLAELA 322
V S L E+ L + VE+ + EKA+R ++ + V +M E + +A
Sbjct: 716 GVASALAER--LEGGRYINVEI--NREKAARYGMTVADVQLFVTSAVGGAMVGETVEGIA 771
Query: 323 RATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKV 371
R LR Q D P+ALR +P L+ P++ + D+ +KV
Sbjct: 772 RYPINLRYPQSWRDSPQALRQLPILT-------PMKQQITLADVADIKV 813
>pdb|3NE5|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli
Length = 1054
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 267 AVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEI----LAKVKSSMTKEDLAELA 322
V S L E+ L + VE+ + EKA+R ++ + V +M E + +A
Sbjct: 716 GVASALAER--LEGGRYINVEI--NREKAARYGMTVADVQLFVTSAVGGAMVGETVEGIA 771
Query: 323 RATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKV 371
R LR Q D P+ALR +P L+ P++ + D+ +KV
Sbjct: 772 RYPINLRYPQSWRDSPQALRQLPILT-------PMKQQITLADVADIKV 813
>pdb|4DNT|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, Mutant
Length = 1054
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 268 VFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEI----LAKVKSSMTKEDLAELAR 323
V S L E+ L + VE+ + EKA+R ++ + V +M E + +AR
Sbjct: 717 VASALAER--LEGGRYINVEI--NREKAARYGMTVADVQLFVTSAVGGAMVGETVEGIAR 772
Query: 324 ATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKV 371
LR Q D P+ALR +P L+ P++ + D+ +KV
Sbjct: 773 YPINLRYPQSWRDSPQALRQLPILT-------PMKQQITLADVADIKV 813
>pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-segment Dna
Length = 759
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 138 NILGRAAQQALFPDNAYGVD-SGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDD 195
N +G L P+ A+G +GG + + E + RK +HP++ ++ Y +D
Sbjct: 333 NFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQED 391
>pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202
pdb|1BJT|A Chain A, Topoisomerase Ii Residues 409-1201
Length = 793
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 138 NILGRAAQQALFPDNAYGVD-SGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDD 195
N +G L P+ A+G +GG + + E + RK +HP++ ++ Y +D
Sbjct: 343 NFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQED 401
>pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|B Chain B, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|C Chain C, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|D Chain D, Citrate Synthase From Sulfolobus Solfataricus
Length = 377
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 448 CCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIA 507
++G G AE+ F F +++ D R + + + +NRL G GH +
Sbjct: 208 AALAALKGPLHGGAAEEAFKQF------IEIGDPNRVQNWFNDKVVNQKNRLMGFGHRVY 261
Query: 508 A-----ARMDAKLNTAGWISEQMGGVSYLEFLQALEE 539
A++ KL I Y E Q LEE
Sbjct: 262 KTYDPRAKIFKKLALT-LIERNADARRYFEIAQKLEE 297
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,864,492
Number of Sequences: 62578
Number of extensions: 1045172
Number of successful extensions: 2709
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2681
Number of HSP's gapped (non-prelim): 42
length of query: 802
length of database: 14,973,337
effective HSP length: 107
effective length of query: 695
effective length of database: 8,277,491
effective search space: 5752856245
effective search space used: 5752856245
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)