Query 003701
Match_columns 801
No_of_seqs 311 out of 1532
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:23:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 1.8E-56 3.8E-61 475.5 19.3 177 4-180 6-183 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 7.1E-47 1.5E-51 371.9 17.1 167 6-180 39-207 (217)
3 KOG0879 U-snRNP-associated cyc 100.0 1.7E-46 3.8E-51 347.9 12.6 169 4-175 8-177 (177)
4 PTZ00221 cyclophilin; Provisio 100.0 1.6E-42 3.5E-47 361.6 22.1 179 3-185 49-229 (249)
5 KOG0111 Cyclophilin-type pepti 100.0 1.2E-43 2.6E-48 352.7 10.8 166 3-176 133-298 (298)
6 PTZ00060 cyclophilin; Provisio 100.0 4E-41 8.8E-46 339.6 20.9 170 5-176 14-183 (183)
7 PLN03149 peptidyl-prolyl isome 100.0 9.1E-41 2E-45 337.6 19.7 169 4-175 16-186 (186)
8 cd01926 cyclophilin_ABH_like c 100.0 1.5E-40 3.1E-45 330.1 20.1 164 7-173 1-164 (164)
9 KOG0881 Cyclophilin type pepti 100.0 7E-41 1.5E-45 307.4 9.2 153 5-174 8-162 (164)
10 KOG0883 Cyclophilin type, U bo 100.0 4.4E-39 9.6E-44 341.2 10.2 164 4-184 275-440 (518)
11 cd01923 cyclophilin_RING cyclo 100.0 1.3E-37 2.7E-42 307.6 19.2 156 8-180 1-158 (159)
12 KOG0885 Peptidyl-prolyl cis-tr 100.0 3.6E-38 7.7E-43 333.9 13.6 163 5-185 11-177 (439)
13 COG0652 PpiB Peptidyl-prolyl c 100.0 1.7E-37 3.7E-42 303.5 16.6 148 9-175 2-157 (158)
14 cd01928 Cyclophilin_PPIL3_like 100.0 1.4E-36 3E-41 298.4 18.3 148 9-173 3-152 (153)
15 cd01921 cyclophilin_RRM cyclop 100.0 3.5E-36 7.6E-41 299.4 18.5 153 11-180 2-164 (166)
16 cd01927 cyclophilin_WD40 cyclo 100.0 3E-36 6.6E-41 294.5 17.7 144 11-171 2-147 (148)
17 KOG0865 Cyclophilin type pepti 100.0 5.3E-37 1.2E-41 302.2 9.9 163 5-175 2-167 (167)
18 cd01922 cyclophilin_SpCYP2_lik 100.0 1E-35 2.2E-40 290.1 17.3 143 11-170 2-145 (146)
19 cd01925 cyclophilin_CeCYP16-li 100.0 3.1E-35 6.7E-40 293.9 19.4 161 5-182 4-167 (171)
20 KOG0884 Similar to cyclophilin 100.0 9.1E-36 2E-40 272.3 11.7 154 8-178 2-158 (161)
21 KOG0882 Cyclophilin-related pe 100.0 7E-36 1.5E-40 322.6 12.3 151 7-174 405-557 (558)
22 PRK10903 peptidyl-prolyl cis-t 100.0 5.1E-34 1.1E-38 289.3 19.1 153 4-175 26-189 (190)
23 PRK10791 peptidyl-prolyl cis-t 100.0 2.1E-33 4.6E-38 278.7 18.2 148 9-175 2-163 (164)
24 KOG0415 Predicted peptidyl pro 100.0 5.5E-33 1.2E-37 292.1 15.1 161 9-186 3-173 (479)
25 cd01920 cyclophilin_EcCYP_like 100.0 1.4E-32 3.1E-37 270.6 16.6 142 11-171 2-154 (155)
26 PF00160 Pro_isomerase: Cyclop 100.0 5.2E-32 1.1E-36 265.4 17.6 150 10-174 1-155 (155)
27 cd00317 cyclophilin cyclophili 100.0 1.2E-31 2.6E-36 260.6 17.1 143 10-170 1-145 (146)
28 cd01924 cyclophilin_TLP40_like 100.0 7.1E-31 1.5E-35 263.5 15.1 125 20-155 6-164 (176)
29 KOG0882 Cyclophilin-related pe 97.4 0.00016 3.6E-09 80.6 5.0 145 19-175 110-262 (558)
30 TIGR03268 methan_mark_3 putati 96.9 0.0045 9.7E-08 70.8 10.0 111 23-155 377-495 (503)
31 PF12903 DUF3830: Protein of u 96.7 0.0055 1.2E-07 60.1 7.4 107 22-156 9-131 (147)
32 PRK00969 hypothetical protein; 96.5 0.01 2.3E-07 68.0 9.6 110 23-155 380-497 (508)
33 TIGR03268 methan_mark_3 putati 96.0 0.02 4.3E-07 65.7 8.2 106 17-154 197-302 (503)
34 PRK00969 hypothetical protein; 95.9 0.021 4.5E-07 65.7 7.7 106 17-154 200-305 (508)
35 COG4070 Predicted peptidyl-pro 95.0 0.057 1.2E-06 60.0 7.2 112 23-155 378-498 (512)
36 COG4070 Predicted peptidyl-pro 93.4 0.24 5.2E-06 55.2 7.9 106 17-154 199-304 (512)
37 KOG2140 Uncharacterized conser 91.8 0.00016 3.4E-09 82.1 -19.4 24 23-46 476-499 (739)
38 KOG3116 Predicted C3H1-type Zn 90.7 0.36 7.7E-06 47.2 4.6 12 138-149 22-33 (177)
39 PF04126 Cyclophil_like: Cyclo 90.6 0.55 1.2E-05 44.8 5.9 103 11-155 3-113 (120)
40 KOG2985 Uncharacterized conser 87.9 0.25 5.5E-06 52.0 1.5 28 202-229 169-196 (306)
41 KOG4207 Predicted splicing fac 87.5 3.8 8.3E-05 42.6 9.5 12 779-790 244-255 (256)
42 KOG0526 Nucleosome-binding fac 87.0 7.8 0.00017 45.3 12.7 15 2-16 248-262 (615)
43 PHA03001 putative virion core 85.3 2.3 4.9E-05 40.9 6.2 52 7-71 4-61 (132)
44 KOG0546 HSP90 co-chaperone CPR 83.1 0.29 6.3E-06 54.4 -0.8 111 36-152 70-181 (372)
45 PF06138 Chordopox_E11: Chordo 79.7 4.2 9.1E-05 39.1 5.7 51 8-71 5-62 (130)
46 KOG4368 Predicted RNA binding 78.4 3.5 7.5E-05 48.4 5.6 11 56-66 219-229 (757)
47 PF10500 SR-25: Nuclear RNA-sp 73.7 2.4 5.2E-05 44.4 2.5 6 256-261 84-89 (225)
48 KOG2548 SWAP mRNA splicing reg 53.6 19 0.00042 42.1 5.0 7 37-43 38-44 (653)
49 KOG0885 Peptidyl-prolyl cis-tr 53.5 2 4.4E-05 48.0 -2.6 48 10-67 40-87 (439)
50 PF07174 FAP: Fibronectin-atta 51.8 21 0.00045 38.7 4.6 93 19-126 165-261 (297)
51 COG2164 Uncharacterized conser 51.3 15 0.00032 34.2 3.0 22 21-43 13-34 (126)
52 KOG0111 Cyclophilin-type pepti 41.8 12 0.00026 39.3 1.0 101 38-149 192-297 (298)
53 KOG1832 HIV-1 Vpr-binding prot 41.6 26 0.00055 43.6 3.8 35 116-150 1274-1322(1516)
54 KOG3953 SOCS box protein SSB-1 39.3 77 0.0017 33.8 6.4 35 9-43 71-106 (242)
55 KOG2138 Predicted RNA binding 37.2 13 0.00029 44.7 0.6 14 131-144 678-691 (883)
56 KOG2236 Uncharacterized conser 36.6 65 0.0014 37.4 5.8 11 59-69 16-26 (483)
57 KOG3794 CBF1-interacting corep 35.6 8.6 0.00019 43.3 -1.2 15 32-46 96-110 (453)
58 KOG2740 Clathrin-associated pr 35.4 14 0.00031 41.4 0.4 141 26-179 70-244 (418)
59 KOG3262 H/ACA small nucleolar 35.3 31 0.00067 35.4 2.7 13 35-47 55-67 (215)
60 PF14283 DUF4366: Domain of un 32.4 1.2E+02 0.0025 32.3 6.5 37 118-156 81-117 (218)
61 KOG0883 Cyclophilin type, U bo 31.8 18 0.00039 40.9 0.5 71 35-109 322-393 (518)
62 KOG3064 RNA-binding nuclear pr 31.6 20 0.00044 38.5 0.8 8 121-128 116-123 (303)
63 COG4925 Uncharacterized conser 29.3 3.1E+02 0.0066 27.1 8.2 27 122-152 129-155 (166)
64 PF02505 MCR_D: Methyl-coenzym 28.3 3.9E+02 0.0085 26.8 8.9 101 23-169 1-107 (153)
65 PF11314 DUF3117: Protein of u 27.8 60 0.0013 26.3 2.6 29 6-36 16-44 (51)
66 KOG0526 Nucleosome-binding fac 27.5 33 0.00071 40.4 1.6 6 22-27 215-220 (615)
67 COG5226 CEG1 mRNA capping enzy 26.9 2E+02 0.0044 32.1 7.3 32 98-129 213-259 (404)
68 PF05913 DUF871: Bacterial pro 26.7 31 0.00067 39.1 1.3 51 104-155 298-349 (357)
69 COG5406 Nucleosome binding fac 26.6 62 0.0013 39.0 3.6 13 35-47 698-710 (1001)
70 KOG0670 U4/U6-associated splic 25.6 33 0.00072 40.6 1.3 50 29-78 590-639 (752)
71 KOG0956 PHD finger protein AF1 24.1 1.3E+02 0.0029 36.7 5.7 9 4-12 18-26 (900)
72 COG1748 LYS9 Saccharopine dehy 22.1 1.9E+02 0.0041 33.4 6.3 37 119-155 231-279 (389)
73 PF10278 Med19: Mediator of RN 21.7 41 0.00089 34.4 0.9 7 139-145 74-80 (178)
74 PF12580 TPPII: Tripeptidyl pe 21.6 56 0.0012 34.0 1.9 90 58-156 41-134 (194)
75 KOG1065 Maltase glucoamylase a 21.1 1E+02 0.0022 38.5 4.2 14 4-17 151-164 (805)
76 COG1974 LexA SOS-response tran 20.8 2.3E+02 0.005 29.7 6.2 18 61-78 111-128 (201)
77 COG5023 Tubulin [Cytoskeleton] 20.1 1E+02 0.0022 35.2 3.6 29 23-51 3-32 (443)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-56 Score=475.52 Aligned_cols=177 Identities=57% Similarity=0.908 Sum_probs=171.4
Q ss_pred CCCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCC
Q 003701 4 KKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDG 83 (801)
Q Consensus 4 ~~np~v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g 83 (801)
..||+|||||+||++++||||||||.|+||+||+||++||+|++|.+..||++++|+|+.|||||++||||||||+++||
T Consensus 6 ~~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnG 85 (372)
T KOG0546|consen 6 RTNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNG 85 (372)
T ss_pred CCCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCC
Confidence 35899999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCCC
Q 003701 84 TSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGR 162 (801)
Q Consensus 84 ~gg~si~g~~f~dE~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~-~~~~g~ 162 (801)
+||++|||.+|.||+|.|+|+.+|||+|||.|||+||||||||+.++|||||+|||||+||.|++||..|+++ ++.+++
T Consensus 86 tGGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~sk 165 (372)
T KOG0546|consen 86 TGGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESK 165 (372)
T ss_pred CCcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 777889
Q ss_pred ccccEEEEEeeecccccc
Q 003701 163 LTVTVKIINCGEVSEDKK 180 (801)
Q Consensus 163 P~~~v~I~~~g~l~~~~k 180 (801)
|+.+|+|.+||||+...+
T Consensus 166 P~~dV~I~dCGel~~~~~ 183 (372)
T KOG0546|consen 166 PLADVVISDCGELVKKSK 183 (372)
T ss_pred CccceEeccccccccccc
Confidence 999999999999975443
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-47 Score=371.89 Aligned_cols=167 Identities=55% Similarity=0.868 Sum_probs=160.8
Q ss_pred CcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhc-cCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCC
Q 003701 6 SLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCT-GEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGT 84 (801)
Q Consensus 6 np~v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~-G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~ 84 (801)
.-+|||||.+|++++|+|+|+||.+.+|+||+||.+||+ +++|.| |.|+.||||+++|||||||++.++|.
T Consensus 39 T~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g--------Y~gS~FhRVi~nfmIQGGd~t~g~gt 110 (217)
T KOG0880|consen 39 THKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG--------YKGSKFHRVIPNFMIQGGDFTKGDGT 110 (217)
T ss_pred eeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc--------cCCceeeeeecCceeecCccccCCCC
Confidence 347999999999999999999999999999999999999 888877 99999999999999999999999999
Q ss_pred CCCcccCCCCCCCCCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCCCc
Q 003701 85 SGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRL 163 (801)
Q Consensus 85 gg~si~g~~f~dE~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~-~~~~g~P 163 (801)
||.+|||.+|+|||+.|+|+.+|.|+|||.|+|+||+|||||+...+||||+|+|||+|++||+||.+|+.+ ++..++|
T Consensus 111 Gg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP 190 (217)
T KOG0880|consen 111 GGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKP 190 (217)
T ss_pred CCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred cccEEEEEeeecccccc
Q 003701 164 TVTVKIINCGEVSEDKK 180 (801)
Q Consensus 164 ~~~v~I~~~g~l~~~~k 180 (801)
+++|+|++||+|.....
T Consensus 191 ~e~v~I~~~g~l~~~~~ 207 (217)
T KOG0880|consen 191 LEDVVIANCGELPVEYL 207 (217)
T ss_pred cccEEEeecCcccccch
Confidence 99999999999876543
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-46 Score=347.89 Aligned_cols=169 Identities=52% Similarity=0.849 Sum_probs=162.7
Q ss_pred CCCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCC
Q 003701 4 KKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDG 83 (801)
Q Consensus 4 ~~np~v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g 83 (801)
..||.||||+++|+.++|+|+||||+|++|+|++||.++|+|+.- ..|++.-|++++|||||++||||||||.+++|
T Consensus 8 ~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r---~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDG 84 (177)
T KOG0879|consen 8 PNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYR---KDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDG 84 (177)
T ss_pred CCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccc---cCCccccccccchHHHhhhheeccCceecCCC
Confidence 459999999999999999999999999999999999999999863 45788899999999999999999999999999
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCCC
Q 003701 84 TSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGR 162 (801)
Q Consensus 84 ~gg~si~g~~f~dE~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~-~~~~g~ 162 (801)
+|..+||+.+|.|||+.|+|..+|+|+|||.|+++||.|||||...+.+||++|+|||+|++||.|+.+||.+ +..+++
T Consensus 85 tG~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~Nnk 164 (177)
T KOG0879|consen 85 TGVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNK 164 (177)
T ss_pred ceEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 788999
Q ss_pred ccccEEEEEeeec
Q 003701 163 LTVTVKIINCGEV 175 (801)
Q Consensus 163 P~~~v~I~~~g~l 175 (801)
|..+|.|+.||++
T Consensus 165 PKl~v~i~qCGem 177 (177)
T KOG0879|consen 165 PKLPVVIVQCGEM 177 (177)
T ss_pred CCCcEEEeecccC
Confidence 9999999999974
No 4
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=1.6e-42 Score=361.62 Aligned_cols=179 Identities=37% Similarity=0.522 Sum_probs=164.5
Q ss_pred CCCCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecC-ceeeeCCCcCC
Q 003701 3 KKKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKG-SMAEGGDFVKR 81 (801)
Q Consensus 3 ~~~np~v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikg-f~iqgGd~~~~ 81 (801)
...+|+|||||++|+.++|+|+||||.++||+||+||+.||+|++|++..+|...+|+|+.||+|+++ ||||+||+..
T Consensus 49 ~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~- 127 (249)
T PTZ00221 49 EQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS- 127 (249)
T ss_pred CCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC-
Confidence 45689999999999999999999999999999999999999999998888888888999999999985 8999999753
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCC
Q 003701 82 DGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEE 160 (801)
Q Consensus 82 ~g~gg~si~g~~f~dE~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~-~~~~ 160 (801)
.+.++||..|.+|++.++|+..|+|+||+.++++||+||||||+++++||++|+|||+||+||+||++|+.+ ++.+
T Consensus 128 ---~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~ 204 (249)
T PTZ00221 128 ---FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDV 204 (249)
T ss_pred ---CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCC
Confidence 356788999999998999999999999999999999999999999999999999999999999999999988 5778
Q ss_pred CCccccEEEEEeeeccccccccccc
Q 003701 161 GRLTVTVKIINCGEVSEDKKKGNKL 185 (801)
Q Consensus 161 g~P~~~v~I~~~g~l~~~~kk~~k~ 185 (801)
++|+.+|+|.+|++|..........
T Consensus 205 grP~~~V~I~~Cgvl~~~~p~~~~~ 229 (249)
T PTZ00221 205 GRPLLPVTVSFCGALTGEKPPGRQQ 229 (249)
T ss_pred CCCCCCeEEEECeEecCCCCCcccc
Confidence 9999999999999998766555443
No 5
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-43 Score=352.72 Aligned_cols=166 Identities=46% Similarity=0.785 Sum_probs=162.7
Q ss_pred CCCCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCC
Q 003701 3 KKKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRD 82 (801)
Q Consensus 3 ~~~np~v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~ 82 (801)
.+.||+|||++.||...+|+|+++|..|+.|+|++||.+||+|+.|+| |+|+.|||||+.||+|||||++++
T Consensus 133 a~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg--------ykgssfhriip~fmcqggdftn~n 204 (298)
T KOG0111|consen 133 AMENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG--------YKGSSFHRIIPKFMCQGGDFTNGN 204 (298)
T ss_pred hhhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC--------ccccchhhhhhhhhccCCccccCC
Confidence 467999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCCCCC
Q 003701 83 GTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGR 162 (801)
Q Consensus 83 g~gg~si~g~~f~dE~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~~~~~g~ 162 (801)
|+||.+|||.+|.|||+.|+|+.+|+|+|||.|.|+||+||||++....|||++|+|||.||+||+||.+|+.++...|+
T Consensus 205 gtggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgk 284 (298)
T KOG0111|consen 205 GTGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGK 284 (298)
T ss_pred CCCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccEEEEEeeecc
Q 003701 163 LTVTVKIINCGEVS 176 (801)
Q Consensus 163 P~~~v~I~~~g~l~ 176 (801)
|...|+|.+||+|.
T Consensus 285 p~qkv~i~~cge~~ 298 (298)
T KOG0111|consen 285 PQQKVKIVECGEIE 298 (298)
T ss_pred cceEEEEEeccccC
Confidence 99999999999974
No 6
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=4e-41 Score=339.55 Aligned_cols=170 Identities=53% Similarity=0.864 Sum_probs=159.6
Q ss_pred CCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCC
Q 003701 5 KSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGT 84 (801)
Q Consensus 5 ~np~v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~ 84 (801)
++|+||||+++++..+|+|+||||.+.||+||+||+.||+|+.... .|+.++|+|+.||||+++|||||||+..++|.
T Consensus 14 ~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~--~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~ 91 (183)
T PTZ00060 14 KRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS--SGKNLHYKGSIFHRIIPQFMCQGGDITNHNGT 91 (183)
T ss_pred CCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc--cCcccccCCeEEEEEcCCCeEEeCCccCCCCC
Confidence 5899999999999999999999999999999999999999876432 46788999999999999999999999878889
Q ss_pred CCCcccCCCCCCCCCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCCCCCcc
Q 003701 85 SGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLT 164 (801)
Q Consensus 85 gg~si~g~~f~dE~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~~~~~g~P~ 164 (801)
+++++|+..|.+|+..+.|..+|+|+|++.+++.+++||||||+++++||++|+|||+||+|||||++|+.+.+.++.|+
T Consensus 92 ~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~ 171 (183)
T PTZ00060 92 GGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPK 171 (183)
T ss_pred CCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCc
Confidence 99999999999998899999999999999999999999999999999999999999999999999999998877788999
Q ss_pred ccEEEEEeeecc
Q 003701 165 VTVKIINCGEVS 176 (801)
Q Consensus 165 ~~v~I~~~g~l~ 176 (801)
.+|+|++||+|.
T Consensus 172 ~~v~I~~cg~~~ 183 (183)
T PTZ00060 172 KPVVVTDCGELQ 183 (183)
T ss_pred CCeEEEEeEEcC
Confidence 999999999973
No 7
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=9.1e-41 Score=337.62 Aligned_cols=169 Identities=51% Similarity=0.776 Sum_probs=155.6
Q ss_pred CCCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCC
Q 003701 4 KKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDG 83 (801)
Q Consensus 4 ~~np~v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g 83 (801)
.+||+|||||++++..+|+|+||||.+.||+||+||+.||+|+... .|....|++|.||+|+++|||||||+..++|
T Consensus 16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~---~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g 92 (186)
T PLN03149 16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRK---AGLPQGYKGCQFHRVIKDFMIQGGDFLKGDG 92 (186)
T ss_pred CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccc---cCcccccCCcEEEEEcCCcEEEcCCcccCCC
Confidence 4589999999999999999999999999999999999999876421 1223459999999999999999999888889
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEE-eCHHHHHHHHhc-CCCCC
Q 003701 84 TSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELV-QGHEILKKIENV-GDEEG 161 (801)
Q Consensus 84 ~gg~si~g~~f~dE~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV-~G~dVL~kIe~~-~~~~g 161 (801)
.++.++|+..|.+|++.+.|+.+|+|+|++.+++++++||||||+++++||++|+|||+|| +||+||++|+.+ ++.++
T Consensus 93 ~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~ 172 (186)
T PLN03149 93 TGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNN 172 (186)
T ss_pred CCcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCC
Confidence 9999999999999988899999999999999999999999999999999999999999999 799999999998 56889
Q ss_pred CccccEEEEEeeec
Q 003701 162 RLTVTVKIINCGEV 175 (801)
Q Consensus 162 ~P~~~v~I~~~g~l 175 (801)
+|+.+|+|.+||++
T Consensus 173 ~P~~~i~I~~cG~~ 186 (186)
T PLN03149 173 RPKLACVISECGEM 186 (186)
T ss_pred CCcCCeEEEeCEeC
Confidence 99999999999985
No 8
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=1.5e-40 Score=330.15 Aligned_cols=164 Identities=57% Similarity=0.936 Sum_probs=153.0
Q ss_pred cEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCC
Q 003701 7 LLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSG 86 (801)
Q Consensus 7 p~v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg 86 (801)
|+||||+.+++..+|+|+||||.++||+||+||+.||+|++|.+. +..+|+|+.||||+++||||+||+..+++.++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~---~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~ 77 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG---KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGG 77 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc---cccccCCCEEEEEeCCcEEEcCCccCCCCCCC
Confidence 789999999999999999999999999999999999997665432 45689999999999999999999887888899
Q ss_pred CcccCCCCCCCCCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCCCCCcccc
Q 003701 87 ESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVT 166 (801)
Q Consensus 87 ~si~g~~f~dE~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~~~~~g~P~~~ 166 (801)
+++|+..|++|+..+.|+.+|+|+||+.+++++++||||||+++++||++|+|||+||+|||||++|+.+..++++|+.+
T Consensus 78 ~~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~ 157 (164)
T cd01926 78 KSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKK 157 (164)
T ss_pred CcccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCC
Confidence 99999999999889999999999999999999999999999999999999999999999999999999984448999999
Q ss_pred EEEEEee
Q 003701 167 VKIINCG 173 (801)
Q Consensus 167 v~I~~~g 173 (801)
|+|++||
T Consensus 158 i~I~~cG 164 (164)
T cd01926 158 VVIADCG 164 (164)
T ss_pred eEEEECC
Confidence 9999997
No 9
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-41 Score=307.38 Aligned_cols=153 Identities=39% Similarity=0.597 Sum_probs=145.9
Q ss_pred CCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCC
Q 003701 5 KSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGT 84 (801)
Q Consensus 5 ~np~v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~ 84 (801)
+-|.|+|+|++|- |+||||-+.||+||.||.+|+. .+||+|+.|||||++|||||||++ ++|.
T Consensus 8 q~~~V~LeTsmG~-----i~~ElY~kHaP~TC~NF~eLar-----------rgYYn~v~FHRii~DFmiQGGDPT-GTGR 70 (164)
T KOG0881|consen 8 QPPNVTLETSMGK-----ITLELYWKHAPRTCQNFAELAR-----------RGYYNGVIFHRIIKDFMIQGGDPT-GTGR 70 (164)
T ss_pred CCCeEEEeecccc-----eehhhhhhcCcHHHHHHHHHHh-----------cccccceeeeehhhhheeecCCCC-CCCC
Confidence 4578999999988 9999999999999999999996 789999999999999999999996 7999
Q ss_pred CCCcccCCCCCCC-CCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCCC
Q 003701 85 SGESIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGR 162 (801)
Q Consensus 85 gg~si~g~~f~dE-~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~-~~~~g~ 162 (801)
||.+|||.+|.|| +..|+|..+|+|+|||.|||+||+||||||.+.+||||+|+|||+|+.||+|++.|-.+ ++...+
T Consensus 71 GGaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DR 150 (164)
T KOG0881|consen 71 GGASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDR 150 (164)
T ss_pred CccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCC
Confidence 9999999999999 88999999999999999999999999999999999999999999999999999999988 888999
Q ss_pred ccccEEEEEeee
Q 003701 163 LTVTVKIINCGE 174 (801)
Q Consensus 163 P~~~v~I~~~g~ 174 (801)
|+.+|+|+.+.+
T Consensus 151 Pi~~~kIika~~ 162 (164)
T KOG0881|consen 151 PIDEVKIIKAYP 162 (164)
T ss_pred CccceeeEeeec
Confidence 999999998754
No 10
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-39 Score=341.19 Aligned_cols=164 Identities=37% Similarity=0.567 Sum_probs=155.5
Q ss_pred CCCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCC
Q 003701 4 KKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDG 83 (801)
Q Consensus 4 ~~np~v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g 83 (801)
|++.+|-|.|+.|. |.||||+|.+|.+|+||+.||. ++||+|+.|||.|.+|||||||++ |+|
T Consensus 275 Kkkgyvrl~Tn~G~-----lNlELhcd~~P~aceNFI~lc~-----------~gYYnnt~FHRsIrnFmiQGGDPT-GTG 337 (518)
T KOG0883|consen 275 KKKGYVRLVTNHGP-----LNLELHCDYAPRACENFITLCK-----------NGYYNNTIFHRSIRNFMIQGGDPT-GTG 337 (518)
T ss_pred cccceEEEeccCCc-----eeeEeecCcchHHHHHHHHHHh-----------cccccchHHHHHHHHHeeeCCCCC-CCC
Confidence 56788999999988 9999999999999999999996 899999999999999999999996 899
Q ss_pred CCCCcccCCCCCCC-CCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCC
Q 003701 84 TSGESIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEG 161 (801)
Q Consensus 84 ~gg~si~g~~f~dE-~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~-~~~~g 161 (801)
.||++|+|.+|.|| ...|.|+.+|+|+|||.|+|+||+|||||+..+.|||++|||||+||.|++||.+|+.+ +++..
T Consensus 338 ~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~D 417 (518)
T KOG0883|consen 338 RGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKD 417 (518)
T ss_pred CCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCC
Confidence 99999999999999 67899999999999999999999999999999999999999999999999999999999 78889
Q ss_pred CccccEEEEEeeecccccccccc
Q 003701 162 RLTVTVKIINCGEVSEDKKKGNK 184 (801)
Q Consensus 162 ~P~~~v~I~~~g~l~~~~kk~~k 184 (801)
.|+.+|+|.+..|.++.+.+..+
T Consensus 418 rP~e~I~i~~~~VFVdPfeEa~~ 440 (518)
T KOG0883|consen 418 RPKEEIKIEDAIVFVDPFEEADK 440 (518)
T ss_pred CcccceEEeeeEEeeCcHHHHHH
Confidence 99999999999999887766554
No 11
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=1.3e-37 Score=307.61 Aligned_cols=156 Identities=39% Similarity=0.602 Sum_probs=144.9
Q ss_pred EEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCC
Q 003701 8 LVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGE 87 (801)
Q Consensus 8 ~v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~ 87 (801)
+|.|+|+.|. |+||||+++||+||+||++||+ .+||+|+.||||+++|||||||+. ++|.+++
T Consensus 1 ~v~~~T~~G~-----i~ieL~~~~aP~t~~nF~~L~~-----------~g~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~ 63 (159)
T cd01923 1 YVRLHTNKGD-----LNLELHCDKAPKACENFIKLCK-----------KGYYDGTIFHRSIRNFMIQGGDPT-GTGRGGE 63 (159)
T ss_pred CEEEEEcccc-----EEEEEeCCCChHHHHHHHHHHh-----------cCccCCcEEEEEeCCcEEEecccC-CCCCCCc
Confidence 3778888777 9999999999999999999997 578999999999999999999985 6788999
Q ss_pred cccCCCCCCC-CCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCCCccc
Q 003701 88 SIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTV 165 (801)
Q Consensus 88 si~g~~f~dE-~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~-~~~~g~P~~ 165 (801)
++|+..|.+| +..+.|+.+|+|+||+.+++++++||||||+++++||++|+|||+||+||+||++|+.+ +++++.|+.
T Consensus 64 ~~~g~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~ 143 (159)
T cd01923 64 SIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKE 143 (159)
T ss_pred cccCCccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCC
Confidence 9999999999 45789999999999999999999999999999999999999999999999999999998 667899999
Q ss_pred cEEEEEeeecccccc
Q 003701 166 TVKIINCGEVSEDKK 180 (801)
Q Consensus 166 ~v~I~~~g~l~~~~k 180 (801)
+|+|.+|+++.+.+.
T Consensus 144 ~i~I~~~~i~~dpf~ 158 (159)
T cd01923 144 EIKIEDTSVFVDPFE 158 (159)
T ss_pred CeEEEEeEEEeCCCC
Confidence 999999999987664
No 12
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-38 Score=333.85 Aligned_cols=163 Identities=31% Similarity=0.488 Sum_probs=148.5
Q ss_pred CCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCC
Q 003701 5 KSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGT 84 (801)
Q Consensus 5 ~np~v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~ 84 (801)
...+|.|.|+.|+ |.||||+.+||++|.|||+||. .|||+|+.||+++++|+|||||++ ++|+
T Consensus 11 ttgkvil~TT~G~-----I~iELW~kE~P~acrnFiqKOG-----------egyy~nt~fhrlvp~f~~Qggdp~-~~gt 73 (439)
T KOG0885|consen 11 TTGKVILKTTKGD-----IDIELWAKECPKACRNFIQLCL-----------EGYYDNTEFHRLVPGFLVQGGDPT-GTGT 73 (439)
T ss_pred ccceEEEEeccCc-----eeeeehhhhhhHHHHHHHHHHH-----------hccccCceeeeeccchhcccCCCC-CCCC
Confidence 4568999999999 9999999999999999999998 789999999999999999999995 7999
Q ss_pred CCCcccCCCCCCC-CCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc---CCCC
Q 003701 85 SGESIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV---GDEE 160 (801)
Q Consensus 85 gg~si~g~~f~dE-~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~---~~~~ 160 (801)
||++|||.+|.+| +..|.|+.+|+|+|||.+.+.||+||||||+++++|+++|||||+|+ |-.|+..+... .+.+
T Consensus 74 Ggesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVt-GdtIYn~lri~e~eida~ 152 (439)
T KOG0885|consen 74 GGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVT-GDTIYNMLRISEVEIDAD 152 (439)
T ss_pred CccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeec-chhhhhhhhhcccccccc
Confidence 9999999999999 88999999999999999999999999999999999999999999999 76666655544 6678
Q ss_pred CCccccEEEEEeeeccccccccccc
Q 003701 161 GRLTVTVKIINCGEVSEDKKKGNKL 185 (801)
Q Consensus 161 g~P~~~v~I~~~g~l~~~~kk~~k~ 185 (801)
.+|+.+.+|+.|.|+...|......
T Consensus 153 ~Rp~~p~kI~s~EV~~npFdDI~pr 177 (439)
T KOG0885|consen 153 DRPVDPPKIKSVEVLINPFDDIKPR 177 (439)
T ss_pred cCCCCccceeeeEeecCchhhcchh
Confidence 8999999999999998766554443
No 13
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-37 Score=303.47 Aligned_cols=148 Identities=42% Similarity=0.625 Sum_probs=131.3
Q ss_pred EEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCCc
Q 003701 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGES 88 (801)
Q Consensus 9 v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~s 88 (801)
|.|+|+.|. |+||||+++||+||+||++||. .+||+|+.|||||++|||||||++.++|.+|+.
T Consensus 2 v~~~t~~G~-----I~ieL~~~~aP~Tv~NF~~l~~-----------~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~ 65 (158)
T COG0652 2 VILETNKGD-----ITIELYPDKAPKTVANFLQLVK-----------EGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGPG 65 (158)
T ss_pred ceeeccCCC-----EEEEECCCcCcHHHHHHHHHHH-----------cCCCCCceEEEeecCceeecCCCCCCCCCCCCC
Confidence 567777777 9999999999999999999996 789999999999999999999999888888884
Q ss_pred ccCCCCCCCCCCCCCCC--CeEEEeeccC-CCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCC----
Q 003701 89 IYEGKFPDESPRLKHDR--PGLLSMSIAD-RDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEE---- 160 (801)
Q Consensus 89 i~g~~f~dE~~~l~h~~--~G~Vsma~~g-~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~-~~~~---- 160 (801)
.+|++|++.+.|+. +|+|+||+.+ |++||||||||+.+++|||++|+|||+||+|||||++|+.. +...
T Consensus 66 ---~~f~~E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~ 142 (158)
T COG0652 66 ---PPFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQ 142 (158)
T ss_pred ---CCCcccccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCccc
Confidence 89999998888887 9999999998 99999999999999999999999999999999999999997 3322
Q ss_pred CCccccEEEEEeeec
Q 003701 161 GRLTVTVKIINCGEV 175 (801)
Q Consensus 161 g~P~~~v~I~~~g~l 175 (801)
..|..+++|..+.++
T Consensus 143 ~~~~~~~~i~~~~~~ 157 (158)
T COG0652 143 DVPADPVKILSVKIV 157 (158)
T ss_pred CCCCCCeEEeeeeee
Confidence 345566777665554
No 14
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=1.4e-36 Score=298.44 Aligned_cols=148 Identities=41% Similarity=0.660 Sum_probs=137.6
Q ss_pred EEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCCc
Q 003701 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGES 88 (801)
Q Consensus 9 v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~s 88 (801)
|.|+|+.|. |+||||+++||+||+||++||+ .+||+|+.||||+++|||||||+. ++|.++++
T Consensus 3 v~l~T~~G~-----i~ieL~~~~aP~t~~nF~~L~~-----------~g~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~ 65 (153)
T cd01928 3 VTLHTNLGD-----IKIELFCDDCPKACENFLALCA-----------SGYYNGCIFHRNIKGFMVQTGDPT-GTGKGGES 65 (153)
T ss_pred EEEEEcccc-----EEEEEcCCCCcHHHHHHHHHHh-----------cCccCCcEEEEeCCCCEEEccccC-CCCCCCCc
Confidence 678888766 9999999999999999999997 468999999999999999999985 57888899
Q ss_pred ccCCCCCCCC-CCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCCCcccc
Q 003701 89 IYEGKFPDES-PRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVT 166 (801)
Q Consensus 89 i~g~~f~dE~-~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~-~~~~g~P~~~ 166 (801)
+|+..|.+|+ ..+.|+.+|+|+||+.+++++++||||+|+++++||++|+|||+||+|||||++|+.+ ++.+++|+.+
T Consensus 66 ~~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~ 145 (153)
T cd01928 66 IWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEE 145 (153)
T ss_pred cCCCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCC
Confidence 9999999996 4688999999999999999999999999999999999999999999999999999998 6678999999
Q ss_pred EEEEEee
Q 003701 167 VKIINCG 173 (801)
Q Consensus 167 v~I~~~g 173 (801)
|+|.+|.
T Consensus 146 i~I~~~~ 152 (153)
T cd01928 146 IRIKDVT 152 (153)
T ss_pred eEEEEeE
Confidence 9999984
No 15
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=3.5e-36 Score=299.38 Aligned_cols=153 Identities=35% Similarity=0.539 Sum_probs=137.5
Q ss_pred EEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCCccc
Q 003701 11 MDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIY 90 (801)
Q Consensus 11 ~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~si~ 90 (801)
|+|++|. |+||||.++||+||+||++||+ .+||+|+.||||+++|||||||+. +++.++++++
T Consensus 2 l~Ts~G~-----i~ieL~~~~aP~t~~nF~~L~~-----------~~~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~ 64 (166)
T cd01921 2 LETTLGD-----LVIDLFTDECPLACLNFLKLCK-----------LKYYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIY 64 (166)
T ss_pred cEeccCC-----EEEEEcCCCCCHHHHHHHHHHh-----------cCCcCCCEEEEEeCCceEEECCcC-CCCCCCcccc
Confidence 6677766 9999999999999999999997 568999999999999999999985 5677777776
Q ss_pred C-------CCCCCCC-CCCCCCCCeEEEeeccCCCCccceEEEEccC-CCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCC
Q 003701 91 E-------GKFPDES-PRLKHDRPGLLSMSIADRDTLGSQFIITFKA-NHSLDRKYVVFGELVQGHEILKKIENV-GDEE 160 (801)
Q Consensus 91 g-------~~f~dE~-~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~-~~~LDgk~tVFGkVV~G~dVL~kIe~~-~~~~ 160 (801)
+ ..|.+|. ..++|+.+|+|+||+.+++++++||||||.+ +++||++|+|||+||+||+||++|+.+ ++.+
T Consensus 65 ~~~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~ 144 (166)
T cd01921 65 SQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDD 144 (166)
T ss_pred cccccccCcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCC
Confidence 5 3577774 5789999999999999999999999999975 899999999999999999999999988 7788
Q ss_pred CCccccEEEEEeeecccccc
Q 003701 161 GRLTVTVKIINCGEVSEDKK 180 (801)
Q Consensus 161 g~P~~~v~I~~~g~l~~~~k 180 (801)
+.|+.+|+|..|+||.+.+.
T Consensus 145 ~~P~~~i~I~~~~i~~~pf~ 164 (166)
T cd01921 145 GRPLKDIRIKHTHILDDPFP 164 (166)
T ss_pred CCCCCCeEEEEEEEECCCCC
Confidence 99999999999999987664
No 16
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=3e-36 Score=294.46 Aligned_cols=144 Identities=47% Similarity=0.674 Sum_probs=133.6
Q ss_pred EEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCCccc
Q 003701 11 MDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIY 90 (801)
Q Consensus 11 ~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~si~ 90 (801)
|+|+.|. |+||||.++||+||+||+.||+ .+||+|+.||||+++|||||||+. ++|.+++++|
T Consensus 2 i~T~~G~-----i~ieL~~~~aP~t~~nF~~L~~-----------~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~ 64 (148)
T cd01927 2 IHTTKGD-----IHIRLFPEEAPKTVENFTTHAR-----------NGYYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIW 64 (148)
T ss_pred eEecccc-----EEEEEeCCCCcHHHHHHHHHhh-----------cCCcCCcEEEEEcCCcEEEecccC-CCCCCCCccc
Confidence 5676665 9999999999999999999997 568999999999999999999975 6788899999
Q ss_pred CCCCCCCC-CCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCCCccccEE
Q 003701 91 EGKFPDES-PRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVK 168 (801)
Q Consensus 91 g~~f~dE~-~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~-~~~~g~P~~~v~ 168 (801)
+..|.+|+ ..+.|..+|+|+||+.+++++++||||||+++++||++|+|||+||+||+||++|+.+ ++.+++|+.+|+
T Consensus 65 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~ 144 (148)
T cd01927 65 GKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIK 144 (148)
T ss_pred CCccccccccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeE
Confidence 99999995 4899999999999999999999999999999999999999999999999999999988 567899999999
Q ss_pred EEE
Q 003701 169 IIN 171 (801)
Q Consensus 169 I~~ 171 (801)
|..
T Consensus 145 I~~ 147 (148)
T cd01927 145 IIN 147 (148)
T ss_pred EEe
Confidence 975
No 17
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-37 Score=302.19 Aligned_cols=163 Identities=52% Similarity=0.900 Sum_probs=157.5
Q ss_pred CCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEE---eecCceeeeCCCcCC
Q 003701 5 KSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHR---VIKGSMAEGGDFVKR 81 (801)
Q Consensus 5 ~np~v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~R---Iikgf~iqgGd~~~~ 81 (801)
.||+||||++++++++|+|+|+||+|+.|+|++||..||+|++|++ |++.+||+ ++++||+||||++..
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~--------yk~s~fhr~~~~~~~fm~qggDft~h 73 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG--------YKGSCFHRLIPIIPGFMCQGGDFTCH 73 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc--------cccchhhhccccccceeeccCccccc
Confidence 5899999999999999999999999999999999999999999887 99999999 345799999999999
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCCCC
Q 003701 82 DGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEG 161 (801)
Q Consensus 82 ~g~gg~si~g~~f~dE~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~~~~~g 161 (801)
+|++|++||++.|.||++.|+|..+|+|+|||.||++||+||||++....|||++|+|||+|++||+|+++|+..+..+|
T Consensus 74 ngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~g 153 (167)
T KOG0865|consen 74 NGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNG 153 (167)
T ss_pred CCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccEEEEEeeec
Q 003701 162 RLTVTVKIINCGEV 175 (801)
Q Consensus 162 ~P~~~v~I~~~g~l 175 (801)
++..+|.|.+||+|
T Consensus 154 k~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 154 KTSKKITIADCGQL 167 (167)
T ss_pred cccccEEEecCCcC
Confidence 99999999999976
No 18
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1e-35 Score=290.09 Aligned_cols=143 Identities=39% Similarity=0.643 Sum_probs=131.9
Q ss_pred EEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCCccc
Q 003701 11 MDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIY 90 (801)
Q Consensus 11 ~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~si~ 90 (801)
|+|+.|. |+||||.++||+||+||++||+ .+||+|+.||||+++||||||++. ++|.+++++|
T Consensus 2 i~T~~G~-----i~ieL~~~~aP~t~~nF~~L~~-----------~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~ 64 (146)
T cd01922 2 LETTMGE-----ITLELYWNHAPKTCKNFYELAK-----------RGYYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIY 64 (146)
T ss_pred eEecccc-----EEEEEcCCCCcHHHHHHHHHHh-----------cCCcCCcEEEEEcCCcEEEecccC-CCCCCccccc
Confidence 5666655 9999999999999999999997 568999999999999999999985 5788889999
Q ss_pred CCCCCCC-CCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCCCCCccccEEE
Q 003701 91 EGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKI 169 (801)
Q Consensus 91 g~~f~dE-~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~~~~~g~P~~~v~I 169 (801)
+..|.+| +..++|+..|+|+|++.+++++++||||||+++++||++|+|||+||+|||||++|+.+..++++|+.+|+|
T Consensus 65 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I 144 (146)
T cd01922 65 GKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKI 144 (146)
T ss_pred CCCcccccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEE
Confidence 9999999 568999999999999999999999999999999999999999999999999999999984448899999998
Q ss_pred E
Q 003701 170 I 170 (801)
Q Consensus 170 ~ 170 (801)
+
T Consensus 145 ~ 145 (146)
T cd01922 145 L 145 (146)
T ss_pred e
Confidence 6
No 19
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=3.1e-35 Score=293.87 Aligned_cols=161 Identities=34% Similarity=0.503 Sum_probs=145.9
Q ss_pred CCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCC
Q 003701 5 KSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGT 84 (801)
Q Consensus 5 ~np~v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~ 84 (801)
..-.|+|+|++|. |+||||.++||+||+||+.||+ .+||+|+.||||+++||||||++. ++|.
T Consensus 4 ~~~~v~i~Ts~G~-----i~ieL~~~~~P~t~~nF~~L~~-----------~~~Y~~~~f~Rvi~~f~iQgGd~~-~~g~ 66 (171)
T cd01925 4 TTGKVILKTTAGD-----IDIELWSKEAPKACRNFIQLCL-----------EGYYDNTIFHRVVPGFIIQGGDPT-GTGT 66 (171)
T ss_pred cccEEEEEEcccc-----EEEEEeCCCChHHHHHHHHHHh-----------cCCCCCCEEEEEcCCcEEEccccC-CCCc
Confidence 4567899999877 9999999999999999999997 568999999999999999999985 6788
Q ss_pred CCCcccCCCCCCCC-CCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEe-CHHHHHHHHhc-CCCCC
Q 003701 85 SGESIYEGKFPDES-PRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQ-GHEILKKIENV-GDEEG 161 (801)
Q Consensus 85 gg~si~g~~f~dE~-~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~-G~dVL~kIe~~-~~~~g 161 (801)
+++++|+..|.+|. ..+.|+.+|+|+||+.+++++++||||||+++++||++|+|||+|++ +|++|++|+.+ ++.++
T Consensus 67 g~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~ 146 (171)
T cd01925 67 GGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDE 146 (171)
T ss_pred cCcccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCC
Confidence 89999999999994 46889999999999999999999999999999999999999999994 57889999988 67788
Q ss_pred CccccEEEEEeeecccccccc
Q 003701 162 RLTVTVKIINCGEVSEDKKKG 182 (801)
Q Consensus 162 ~P~~~v~I~~~g~l~~~~kk~ 182 (801)
.|+.+|+|.+|+++.+.+.+.
T Consensus 147 ~P~~~i~I~~~~i~~~pf~~~ 167 (171)
T cd01925 147 RPVYPPKITSVEVLENPFDDI 167 (171)
T ss_pred CcCCCeEEEEEEEEcCCchhh
Confidence 999999999999988666543
No 20
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-36 Score=272.28 Aligned_cols=154 Identities=38% Similarity=0.597 Sum_probs=142.5
Q ss_pred EEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCC
Q 003701 8 LVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGE 87 (801)
Q Consensus 8 ~v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~ 87 (801)
.|.|+|++|+ |.||||++-+|+||+||+.||. ..||++|.||+.+++||||+|+++ ..|.||+
T Consensus 2 svtlht~~gd-----ikiev~~e~tpktce~~l~~~~-----------~~~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~ 64 (161)
T KOG0884|consen 2 SVTLHTDVGD-----IKIEVFCERTPKTCENFLALCA-----------SDYYNGCIFHRNIKGFMVQTGDPT-HTGRGGN 64 (161)
T ss_pred eEEEeeccCc-----EEEEEEecCChhHHHHHHHHhh-----------hhhccceeecCCCCCcEEEeCCCC-CCCCCCc
Confidence 3788999988 9999999999999999999996 568999999999999999999986 5899999
Q ss_pred cccCCCCCCC-CCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CC-CCCCcc
Q 003701 88 SIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GD-EEGRLT 164 (801)
Q Consensus 88 si~g~~f~dE-~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~-~~-~~g~P~ 164 (801)
+|+|.+|+|| ...|+|+.+|+|+|||.||++||+|||||.+.++|||-+|+|||+||+|+|+|+.|+.+ .+ ..-+|+
T Consensus 65 siwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl 144 (161)
T KOG0884|consen 65 SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPL 144 (161)
T ss_pred cccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccc
Confidence 9999999999 56899999999999999999999999999999999999999999999999999999998 33 447899
Q ss_pred ccEEEEEeeecccc
Q 003701 165 VTVKIINCGEVSED 178 (801)
Q Consensus 165 ~~v~I~~~g~l~~~ 178 (801)
..+.|+++.+-+..
T Consensus 145 ~~~~ik~itihanp 158 (161)
T KOG0884|consen 145 NDVHIKDITIHANP 158 (161)
T ss_pred hheeeeeeEEecCc
Confidence 99999999876543
No 21
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-36 Score=322.64 Aligned_cols=151 Identities=40% Similarity=0.581 Sum_probs=144.6
Q ss_pred cEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCC
Q 003701 7 LLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSG 86 (801)
Q Consensus 7 p~v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg 86 (801)
.-+.|+|++|+ |.|.||+++||+||+||...|. +|||+|..|||||++||||+||++ |+|.||
T Consensus 405 ~~aiihtt~gd-----i~~kl~p~ecpktvenf~th~r-----------ngyy~~~~fhriik~fmiqtgdp~-g~gtgg 467 (558)
T KOG0882|consen 405 KAAIIHTTQGD-----IHIKLYPEECPKTVENFTTHSR-----------NGYYDNHTFHRIIKGFMIQTGDPL-GDGTGG 467 (558)
T ss_pred cceEEEecccc-----eEEEecccccchhhhhhhcccc-----------CccccCcchHHhhhhheeecCCCC-CCCCCC
Confidence 35789999988 9999999999999999999996 899999999999999999999996 899999
Q ss_pred CcccCCCCCCC-CCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCCCcc
Q 003701 87 ESIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLT 164 (801)
Q Consensus 87 ~si~g~~f~dE-~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~-~~~~g~P~ 164 (801)
++|+|..|+|| +..|.|+.+.+|+|||.|+|+||+|||||+-..|||||+|||||+|+.||+|++.|+++ ++.+++|+
T Consensus 468 esiwg~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~ 547 (558)
T KOG0882|consen 468 ESIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPY 547 (558)
T ss_pred cccccccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCC
Confidence 99999999999 78999999999999999999999999999999999999999999999999999999999 88899999
Q ss_pred ccEEEEEeee
Q 003701 165 VTVKIINCGE 174 (801)
Q Consensus 165 ~~v~I~~~g~ 174 (801)
.+|+|+++.+
T Consensus 548 e~v~iinisv 557 (558)
T KOG0882|consen 548 EDVKIINISV 557 (558)
T ss_pred CceeEEEEec
Confidence 9999999865
No 22
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=5.1e-34 Score=289.32 Aligned_cols=153 Identities=28% Similarity=0.433 Sum_probs=132.8
Q ss_pred CCCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCC
Q 003701 4 KKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDG 83 (801)
Q Consensus 4 ~~np~v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g 83 (801)
..++.|.|+|+.|. |+||||.++||+||+||+.||. .+||+|+.||||+++||||||++....+
T Consensus 26 ~~~~~v~l~T~~G~-----i~ieL~~~~aP~t~~NF~~L~~-----------~g~Ydg~~FhRvi~~f~iQgG~~~~~~~ 89 (190)
T PRK10903 26 KGDPHVLLTTSAGN-----IELELNSQKAPVSVKNFVDYVN-----------SGFYNNTTFHRVIPGFMIQGGGFTEQMQ 89 (190)
T ss_pred CCCcEEEEEecccc-----EEEEEeCCCCcHHHHHHHHHHh-----------cCCcCCcEEEEEeCCceEEeCCcCCCCC
Confidence 46788999998877 9999999999999999999996 6789999999999999999999764322
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCeEEEeeccC-CCCccceEEEEccCCCCCCC-----CCcEEEEEEeCHHHHHHHHhc-
Q 003701 84 TSGESIYEGKFPDESPRLKHDRPGLLSMSIAD-RDTLGSQFIITFKANHSLDR-----KYVVFGELVQGHEILKKIENV- 156 (801)
Q Consensus 84 ~gg~si~g~~f~dE~~~l~h~~~G~Vsma~~g-~~~nGSqFfItL~~~~~LDg-----k~tVFGkVV~G~dVL~kIe~~- 156 (801)
...++..|.+|.....|+..|+|+||+.+ +++|++||||||+++++||+ +|+|||+|++|||||++|+.+
T Consensus 90 ---~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~ 166 (190)
T PRK10903 90 ---QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVP 166 (190)
T ss_pred ---CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCC
Confidence 23446788888655567779999999874 89999999999999999984 899999999999999999998
Q ss_pred CCC----CCCccccEEEEEeeec
Q 003701 157 GDE----EGRLTVTVKIINCGEV 175 (801)
Q Consensus 157 ~~~----~g~P~~~v~I~~~g~l 175 (801)
++. ++.|+.+|+|.+|+++
T Consensus 167 ~~~~~~~~~~P~~~v~I~~~~v~ 189 (190)
T PRK10903 167 THDVGPYQNVPSKPVVILSAKVL 189 (190)
T ss_pred CCCCCCCCCcccCCeEEEEEEEe
Confidence 433 4799999999999875
No 23
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=2.1e-33 Score=278.75 Aligned_cols=148 Identities=28% Similarity=0.428 Sum_probs=125.5
Q ss_pred EEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCCc
Q 003701 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGES 88 (801)
Q Consensus 9 v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~s 88 (801)
|.|+|+.|. |+||||.++||+||+||+.||+ .+||+|+.||||+++||||||++..+.+. .
T Consensus 2 v~~~T~~G~-----i~ieL~~~~aP~t~~nF~~L~~-----------~g~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~ 62 (164)
T PRK10791 2 VTFHTNHGD-----IVIKTFDDKAPETVKNFLDYCR-----------EGFYNNTIFHRVINGFMIQGGGFEPGMKQ---K 62 (164)
T ss_pred EEEEEcccc-----EEEEEeCCCCcHHHHHHHHHHh-----------cCCcCCcEEEEEecCcEEEeCCcCCCCCc---C
Confidence 678888877 9999999999999999999997 57899999999999999999997654332 2
Q ss_pred ccCCCCCCCCCCCCCCCCeEEEeeccC-CCCccceEEEEccCCCCCC-------C-CCcEEEEEEeCHHHHHHHHhc-CC
Q 003701 89 IYEGKFPDESPRLKHDRPGLLSMSIAD-RDTLGSQFIITFKANHSLD-------R-KYVVFGELVQGHEILKKIENV-GD 158 (801)
Q Consensus 89 i~g~~f~dE~~~l~h~~~G~Vsma~~g-~~~nGSqFfItL~~~~~LD-------g-k~tVFGkVV~G~dVL~kIe~~-~~ 158 (801)
.++..|.+|.....|+.+|+|+||+.+ +++|++||||+|.++++|| + +|+|||+|++|||||++|+.+ ++
T Consensus 63 ~~~~~~~~e~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~ 142 (164)
T PRK10791 63 ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATG 142 (164)
T ss_pred CCCCCcCCcccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCC
Confidence 346678888444444579999999985 8999999999999988776 3 699999999999999999988 33
Q ss_pred C----CCCccccEEEEEeeec
Q 003701 159 E----EGRLTVTVKIINCGEV 175 (801)
Q Consensus 159 ~----~g~P~~~v~I~~~g~l 175 (801)
. ++.|..+|+|..|.+.
T Consensus 143 ~~~~~~~~P~~~v~I~~~~i~ 163 (164)
T PRK10791 143 RSGMHQDVPKEDVIIESVTVS 163 (164)
T ss_pred CCCccCCCcCCCeEEEEEEEe
Confidence 3 3689999999999664
No 24
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-33 Score=292.06 Aligned_cols=161 Identities=33% Similarity=0.491 Sum_probs=149.0
Q ss_pred EEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCCc
Q 003701 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGES 88 (801)
Q Consensus 9 v~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~s 88 (801)
|+|+|++|+ |||+||.+++|.||.|||.||. ..||+.|.||.|..+|++|.||++ |+|.||++
T Consensus 3 VlieTtlGD-----lvIDLf~~erP~~clNFLKLCk-----------~KYYN~clfh~vq~~f~aQTGDPt-GtG~GG~s 65 (479)
T KOG0415|consen 3 VLIETTLGD-----LVIDLFVKERPRTCLNFLKLCK-----------IKYYNFCLFHTVQRDFTAQTGDPT-GTGDGGES 65 (479)
T ss_pred EEEEeeccc-----EEeeeecccCcHHHHHHHHHHh-----------HhhcccceeeeccccceeecCCCC-CCCCCcce
Confidence 889999999 9999999999999999999995 789999999999999999999997 69999999
Q ss_pred ccCC-------CCCCC-CCCCCCCCCeEEEeeccCCCCccceEEEEccC-CCCCCCCCcEEEEEEeCHHHHHHHHhc-CC
Q 003701 89 IYEG-------KFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKA-NHSLDRKYVVFGELVQGHEILKKIENV-GD 158 (801)
Q Consensus 89 i~g~-------~f~dE-~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~-~~~LDgk~tVFGkVV~G~dVL~kIe~~-~~ 158 (801)
||+. +|+.| ++.|+|...|+|+|++.|.+.+|+||||||++ +..||++|+|||+|++||++|.+|+.+ .+
T Consensus 66 i~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD 145 (479)
T KOG0415|consen 66 IYGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVD 145 (479)
T ss_pred eeeecccccchhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcC
Confidence 9874 46777 67899999999999999999999999999986 789999999999999999999999987 89
Q ss_pred CCCCccccEEEEEeeecccccccccccc
Q 003701 159 EEGRLTVTVKIINCGEVSEDKKKGNKLR 186 (801)
Q Consensus 159 ~~g~P~~~v~I~~~g~l~~~~kk~~k~k 186 (801)
.++.|+.+|.|.+..||.+.|.......
T Consensus 146 ~~~rPykdIRI~HTiiLdDPFddpp~l~ 173 (479)
T KOG0415|consen 146 PKNRPYKDIRIKHTIILDDPFDDPPDLA 173 (479)
T ss_pred CCCCcccceeeeeeEEecCCCCCchhhc
Confidence 9999999999999999988877665543
No 25
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.4e-32 Score=270.58 Aligned_cols=142 Identities=32% Similarity=0.476 Sum_probs=120.2
Q ss_pred EEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCCccc
Q 003701 11 MDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIY 90 (801)
Q Consensus 11 ~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~si~ 90 (801)
|+|++| +|+||||.+.||+||+||+.||+ .+||+|+.||||+++||||||++....+. ..+
T Consensus 2 l~T~~G-----~i~ieL~~~~aP~t~~nF~~L~~-----------~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~ 62 (155)
T cd01920 2 FQTSLG-----DIVVELYDDKAPITVENFLAYVR-----------KGFYDNTIFHRVISGFVIQGGGFTPDLAQ---KET 62 (155)
T ss_pred cEecce-----eEEEEEeCCCCcHHHHHHHHHHh-----------cCCCCCCEEEEEeCCcEEEeCCCCCCCCc---ccc
Confidence 456555 49999999999999999999997 57899999999999999999998644322 334
Q ss_pred CCCCCCCCCCCCCCCCeEEEeeccC-CCCccceEEEEccCCCCCCC-----CCcEEEEEEeCHHHHHHHHhc-CCC----
Q 003701 91 EGKFPDESPRLKHDRPGLLSMSIAD-RDTLGSQFIITFKANHSLDR-----KYVVFGELVQGHEILKKIENV-GDE---- 159 (801)
Q Consensus 91 g~~f~dE~~~l~h~~~G~Vsma~~g-~~~nGSqFfItL~~~~~LDg-----k~tVFGkVV~G~dVL~kIe~~-~~~---- 159 (801)
+..|.+|.....|+..|+|+||+.+ ++++++||||+|+++++||+ +|+|||+||+||+||++|+.+ ++.
T Consensus 63 ~~~~~~e~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~ 142 (155)
T cd01920 63 LKPIKNEAGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSY 142 (155)
T ss_pred CCcccCcccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCc
Confidence 6778888655566789999999974 89999999999999999995 799999999999999999998 333
Q ss_pred CCCccccEEEEE
Q 003701 160 EGRLTVTVKIIN 171 (801)
Q Consensus 160 ~g~P~~~v~I~~ 171 (801)
++.|+.+|+|..
T Consensus 143 ~~~p~~~v~i~~ 154 (155)
T cd01920 143 QDVPVQDVIIES 154 (155)
T ss_pred CCCcCCCeEEEE
Confidence 258888888865
No 26
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.98 E-value=5.2e-32 Score=265.43 Aligned_cols=150 Identities=43% Similarity=0.700 Sum_probs=129.0
Q ss_pred EEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCC-Cc
Q 003701 10 FMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSG-ES 88 (801)
Q Consensus 10 ~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg-~s 88 (801)
||+|++++ +|+|+||||.++||++|+||++||+ .++|+|+.||+|+++++||+|++......+. ..
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~-----------~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~ 67 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCT-----------SGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDS 67 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHH-----------TTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEB
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhc-----------ccccCCceeecccccceeeeeeccCCCCcccccc
Confidence 78888876 8999999999999999999999998 4589999999999999999999865433111 12
Q ss_pred ccCCCCCCCC--CCCCCCCCeEEEeeccC--CCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCCCCCcc
Q 003701 89 IYEGKFPDES--PRLKHDRPGLLSMSIAD--RDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLT 164 (801)
Q Consensus 89 i~g~~f~dE~--~~l~h~~~G~Vsma~~g--~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~~~~~g~P~ 164 (801)
..+..|++|. ..+.| .+|+|+|++.+ ++.+++||||+|.++++||++|+|||+|++||+||++|+.+..++ +|.
T Consensus 68 ~~~~~~~~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~ 145 (155)
T PF00160_consen 68 TGGEPIPDEFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPK 145 (155)
T ss_dssp TTBSCBSSSGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBS
T ss_pred cCccccccccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccC
Confidence 2344688886 34555 79999999985 788999999999999999999999999999999999999984444 999
Q ss_pred ccEEEEEeee
Q 003701 165 VTVKIINCGE 174 (801)
Q Consensus 165 ~~v~I~~~g~ 174 (801)
.+|+|.+|+|
T Consensus 146 ~~v~I~~cgv 155 (155)
T PF00160_consen 146 QDVTISSCGV 155 (155)
T ss_dssp STEEEEEEEE
T ss_pred CCeEEEEeEC
Confidence 9999999986
No 27
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.98 E-value=1.2e-31 Score=260.57 Aligned_cols=143 Identities=45% Similarity=0.618 Sum_probs=127.0
Q ss_pred EEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCCcc
Q 003701 10 FMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESI 89 (801)
Q Consensus 10 ~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~si 89 (801)
+|+|++|. |+||||.+.||++|+||+.||+ .++|+|+.||+|+++|+||||++....+.+ ..
T Consensus 1 ~~~T~~G~-----i~IeL~~~~~P~~~~nF~~l~~-----------~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~ 62 (146)
T cd00317 1 TLDTTKGR-----IVIELYGDEAPKTVENFLSLAR-----------GGFYDGTTFHRVIPGFMIQGGDPTGTGGGG--SG 62 (146)
T ss_pred CeEeccCc-----EEEEEcCCCChHHHHHHHHHHh-----------cCCcCCCEEEEEeCCCeEEECCCCCCCCCC--Cc
Confidence 46777755 9999999999999999999997 458999999999999999999987543322 46
Q ss_pred cCCCCCCCCCCCC-CCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCCCccccE
Q 003701 90 YEGKFPDESPRLK-HDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTV 167 (801)
Q Consensus 90 ~g~~f~dE~~~l~-h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~-~~~~g~P~~~v 167 (801)
++..|++|..... |+.+|+|+|++.+++.+++||||+|.++++||++|+|||+||+||+||++|+.+ +++++.|+.+|
T Consensus 63 ~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i 142 (146)
T cd00317 63 PGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPV 142 (146)
T ss_pred CCCccCCccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCce
Confidence 6788999965554 899999999999999999999999999999999999999999999999999998 66789999999
Q ss_pred EEE
Q 003701 168 KII 170 (801)
Q Consensus 168 ~I~ 170 (801)
+|.
T Consensus 143 ~I~ 145 (146)
T cd00317 143 TIS 145 (146)
T ss_pred EEe
Confidence 996
No 28
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.97 E-value=7.1e-31 Score=263.47 Aligned_cols=125 Identities=31% Similarity=0.488 Sum_probs=108.3
Q ss_pred eeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCC-C---------------
Q 003701 20 VERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRD-G--------------- 83 (801)
Q Consensus 20 ~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~-g--------------- 83 (801)
.|.|+||||.+.||+||+||+.||+ .+||+|+.||||+++||||||++.... +
T Consensus 6 ~G~i~ieL~~~~aP~t~~NF~~L~~-----------~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e 74 (176)
T cd01924 6 NGTITIVLDGYNAPVTAGNFVDLVE-----------RGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLE 74 (176)
T ss_pred cceEEEEEcCCCCCHHHHHHHHHHH-----------hCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccce
Confidence 4669999999999999999999997 679999999999999999999986431 1
Q ss_pred ----CCCCcccCCCCC-----CCCCCCCCCCCeEEEeeccC--CCCccceEEEEcc-------CCCCCCCCCcEEEEEEe
Q 003701 84 ----TSGESIYEGKFP-----DESPRLKHDRPGLLSMSIAD--RDTLGSQFIITFK-------ANHSLDRKYVVFGELVQ 145 (801)
Q Consensus 84 ----~gg~si~g~~f~-----dE~~~l~h~~~G~Vsma~~g--~~~nGSqFfItL~-------~~~~LDgk~tVFGkVV~ 145 (801)
..+..+|+..|. +++..+.|+.+|+|+||+.+ ++++++||||+|+ .+++||++|+|||+||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~Vve 154 (176)
T cd01924 75 IKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTD 154 (176)
T ss_pred ecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEec
Confidence 123456666553 45677888899999999986 6999999999998 79999999999999999
Q ss_pred CHHHHHHHHh
Q 003701 146 GHEILKKIEN 155 (801)
Q Consensus 146 G~dVL~kIe~ 155 (801)
|||||++|+.
T Consensus 155 G~dvl~~I~~ 164 (176)
T cd01924 155 GLDILRELKV 164 (176)
T ss_pred CHHHHHhhcC
Confidence 9999999975
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00016 Score=80.62 Aligned_cols=145 Identities=19% Similarity=0.221 Sum_probs=112.8
Q ss_pred eeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCC--CcccCC---C
Q 003701 19 PVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSG--ESIYEG---K 93 (801)
Q Consensus 19 ~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg--~si~g~---~ 93 (801)
.+--|.|+||.+-.|..++.|..+|+ .+|+++..|..|.+.+++|.||.......+| |...+. +
T Consensus 110 ~~s~IAVs~~~sg~i~VvD~~~d~~q-----------~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~q 178 (558)
T KOG0882|consen 110 KISLIAVSLFKSGKIFVVDGFGDFCQ-----------DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQ 178 (558)
T ss_pred eeeeEEeecccCCCcEEECCcCCcCc-----------cceecccccCceEEEEeeccccceeeccccceeEeecCCCccc
Confidence 45569999999999999999999996 7889999999999999999998543222222 222222 2
Q ss_pred CCCC--CCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCCCccccEEEE
Q 003701 94 FPDE--SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKII 170 (801)
Q Consensus 94 f~dE--~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~-~~~~g~P~~~v~I~ 170 (801)
|++. ++.++|. ..++.+...-..-.+.+|+++-..+..|+.+..|||.|..|.+|++.|+.. ++....+..++.|.
T Consensus 179 fPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~ 257 (558)
T KOG0882|consen 179 FPRTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLM 257 (558)
T ss_pred Ccccccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccc
Confidence 3333 6678887 667777666555667899999999999999999999999999999999887 66677777788888
Q ss_pred Eeeec
Q 003701 171 NCGEV 175 (801)
Q Consensus 171 ~~g~l 175 (801)
+++..
T Consensus 258 ~Velg 262 (558)
T KOG0882|consen 258 HVELG 262 (558)
T ss_pred eeehh
Confidence 77543
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.88 E-value=0.0045 Score=70.75 Aligned_cols=111 Identities=19% Similarity=0.286 Sum_probs=69.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhc-cCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCCcccCCCCCCCCCCC
Q 003701 23 MVFELFSDIAPKTAENFRALCT-GEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRL 101 (801)
Q Consensus 23 IvIELf~d~aP~t~~NFl~Lc~-G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~si~g~~f~dE~~~l 101 (801)
|.||||.+.||.||.-|..+.- -++.+| -..+|-.+++.+|.-|+. -+...+..||..-
T Consensus 377 i~IeLydd~AP~s~~yFRk~tGL~~~~VG----------~L~v~F~~~d~~mFk~~~----------~~~k~LiPEN~P~ 436 (503)
T TIGR03268 377 IEIELYDDNAPRSVWYFRKFTGLKTKPVG----------RLPVHFAFKEMIMFKGNK----------ELAKGLIPENTPE 436 (503)
T ss_pred EEEEEcccCCchHHHHHHHhcCCcccccc----------eeEEEEEeCCeeEeccCc----------hhccccCCCCCCC
Confidence 8999999999999999998862 111111 223444455543332322 2345567777777
Q ss_pred CCCCCeEEEeeccCCCCccceEEEEccCC-------CCCCCCCcEEEEEEeCHHHHHHHHh
Q 003701 102 KHDRPGLLSMSIADRDTLGSQFIITFKAN-------HSLDRKYVVFGELVQGHEILKKIEN 155 (801)
Q Consensus 102 ~h~~~G~Vsma~~g~~~nGSqFfItL~~~-------~~LDgk~tVFGkVV~G~dVL~kIe~ 155 (801)
....+|.|+|.|......| ..=|-|.++ ..+++ -.|+|+||++++.|++|..
T Consensus 437 ~~V~ag~IgvTN~a~k~~G-~IGVRl~d~defGPTGE~F~g-TNIiG~Vv~~~e~Lk~~Ke 495 (503)
T TIGR03268 437 DKVEAGVIGVTNQACKHVG-MIGVRLEDSDEFGPTGEPFSG-TNIIGRVVEGMERLKGLKE 495 (503)
T ss_pred CccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-cceEEEecCChhHhccccc
Confidence 7778999999887322111 222333332 23333 4678999999999988765
No 31
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=96.65 E-value=0.0055 Score=60.12 Aligned_cols=107 Identities=20% Similarity=0.172 Sum_probs=57.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCc--eeeeCCCcCCCCCCCCcccCCCCCCCCC
Q 003701 22 RMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGS--MAEGGDFVKRDGTSGESIYEGKFPDESP 99 (801)
Q Consensus 22 RIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf--~iqgGd~~~~~g~gg~si~g~~f~dE~~ 99 (801)
.++.+|+.|.||+||+.|+++.- |.+..||-..-+. ||..+++.. .....||.
T Consensus 9 ~~~A~l~~d~AP~Tcaa~~~~LP--------------~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN~ 63 (147)
T PF12903_consen 9 SFTARLLDDKAPKTCAAFWEALP--------------LKGKVIHARWSGEEIWIPLPDFDP-----------FEPGRENH 63 (147)
T ss_dssp EEEEEE-TTTSHHHHHHHHHH----------------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-SE
T ss_pred EEEEEEcccCChHHHHHHHHhCC--------------CCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCcC
Confidence 38889999999999999999984 7777777666554 555565530 11222332
Q ss_pred CCCCCCCeEEEeec--c-----CCC-CccceEEEEccC------CCCCCCCCcEEEEEEeCHHHHHHHHhc
Q 003701 100 RLKHDRPGLLSMSI--A-----DRD-TLGSQFIITFKA------NHSLDRKYVVFGELVQGHEILKKIENV 156 (801)
Q Consensus 100 ~l~h~~~G~Vsma~--~-----g~~-~nGSqFfItL~~------~~~LDgk~tVFGkVV~G~dVL~kIe~~ 156 (801)
..|-..|-|++.= . .+. .+...+|+-.+. ..+|- -.+|++|++|++-|.+++..
T Consensus 64 -T~~P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~--GN~FatI~egle~la~~~~~ 131 (147)
T PF12903_consen 64 -TVTPIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLP--GNHFATITEGLEELAEACRD 131 (147)
T ss_dssp -ESS--TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE----EEEEEEEEESHHHHHHHHHH
T ss_pred -cccCCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccc--eeEEEEEcCCHHHHHHHHHH
Confidence 3334466666650 0 011 122333333222 22232 37999999999999888865
No 32
>PRK00969 hypothetical protein; Provisional
Probab=96.51 E-value=0.01 Score=68.02 Aligned_cols=110 Identities=20% Similarity=0.261 Sum_probs=70.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc-CCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCCcccCCCCCCCCCCC
Q 003701 23 MVFELFSDIAPKTAENFRALCTG-EKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRL 101 (801)
Q Consensus 23 IvIELf~d~aP~t~~NFl~Lc~G-~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~si~g~~f~dE~~~l 101 (801)
|.||||.+.||.||.-|..+.-- ++.+| -..+|-.+++.+|.-|+. -+...+..||..-
T Consensus 380 i~IeLydd~AP~s~~yFR~~tGL~~~~VG----------~L~v~F~~~d~~lFk~~~----------~~~k~liPEN~P~ 439 (508)
T PRK00969 380 IEIELYDDKAPRTVWYFRKVTGLKTKPVG----------KLPVYFKYEDTYLFKGNI----------EYAKGLLPENTPE 439 (508)
T ss_pred EEEEEcCcCCchHHHHHHHhcCCcccccc----------eeEEEEEeCCeEEEccCh----------hhccccCCCCCCC
Confidence 89999999999999999988721 11111 224444556654443332 2345567777777
Q ss_pred CCCCCeEEEeeccCCCCccceEEEEccCC-------CCCCCCCcEEEEEEeCHHHHHHHHh
Q 003701 102 KHDRPGLLSMSIADRDTLGSQFIITFKAN-------HSLDRKYVVFGELVQGHEILKKIEN 155 (801)
Q Consensus 102 ~h~~~G~Vsma~~g~~~nGSqFfItL~~~-------~~LDgk~tVFGkVV~G~dVL~kIe~ 155 (801)
....+|.|+|.|......| ..=|-|.++ ..+++ -.|+|+|| +++.|++|..
T Consensus 440 ~~V~ag~IgvTN~a~k~~G-~iGVR~~d~d~fGPTGE~F~g-TNIIGrVv-~~e~Lk~lKe 497 (508)
T PRK00969 440 DKVKAGEIGVTNMAAKYKG-MIGVRLSDNDEFGPTGEPFEG-TNIIGRVV-NLEKLKKLKE 497 (508)
T ss_pred CccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-ceeEEEec-ChHHhccccc
Confidence 7888999999887322221 222334333 23333 47889999 9999998765
No 33
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.99 E-value=0.02 Score=65.67 Aligned_cols=106 Identities=19% Similarity=0.230 Sum_probs=66.1
Q ss_pred CceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCCcccCCCCCC
Q 003701 17 GDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPD 96 (801)
Q Consensus 17 ~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~si~g~~f~d 96 (801)
.+-+-.+.|||.++ ||..+++||.+... |+|. .-...+-+| +.+.+.|..++.
T Consensus 197 ~~IfTy~evE~~~~-~p~s~EH~la~~~~-----------G~~~----Vd~~tsTfi-----------~d~~L~g~~~p~ 249 (503)
T TIGR03268 197 DRIFTYVEVELDPN-APVSVEHFLALMED-----------GTFR----VDYRTSTFI-----------SDDSLRGLDKPE 249 (503)
T ss_pred CEEEEEEEEEEcCC-CChhHHHHHHHHhC-----------CeEE----EeeeecceE-----------ecccccCccCCc
Confidence 33345577787665 99999999999852 2121 111111111 122333455566
Q ss_pred CCCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHH
Q 003701 97 ESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIE 154 (801)
Q Consensus 97 E~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe 154 (801)
||+ ..-..|+|.+-|.|.. -...||.-.+-+. .-.|+|+|+|+.|||+|+..+
T Consensus 250 En~--~~R~rGtVTVRn~G~G--~G~VYIYredr~s-s~sHtvVG~V~~GiELid~a~ 302 (503)
T TIGR03268 250 ENI--EKRRRGAVTVRNSGVG--EGRVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQ 302 (503)
T ss_pred ccc--CcccceeEEEEeeccC--ceeEEEEcCCCCC-CcccceeEEEecceeeeeccc
Confidence 653 2345899999988643 3568888877432 124999999999999998543
No 34
>PRK00969 hypothetical protein; Provisional
Probab=95.86 E-value=0.021 Score=65.65 Aligned_cols=106 Identities=20% Similarity=0.216 Sum_probs=66.3
Q ss_pred CceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCCcccCCCCCC
Q 003701 17 GDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPD 96 (801)
Q Consensus 17 ~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~si~g~~f~d 96 (801)
++-+-.|.|||.++ ||..+++||.+... |+|. .-...+-+| +.+.+.|..++.
T Consensus 200 ~~IfTy~eve~~~~-~p~s~EH~la~~~~-----------G~f~----Vd~~tstfI-----------~d~~L~g~~~p~ 252 (508)
T PRK00969 200 MKIFTYVEVELDPG-APKSVEHFLALLED-----------GTFE----VDFETSTFI-----------ADDRLQGLKIPE 252 (508)
T ss_pred CEEEEEEEEEEcCC-CCchHHHHHHHHhC-----------CeEE----EeeeecceE-----------eeccccCccCCc
Confidence 33345577777766 99999999999852 2121 111111111 122333455566
Q ss_pred CCCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHH
Q 003701 97 ESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIE 154 (801)
Q Consensus 97 E~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe 154 (801)
||+. .-..|+|.+-|.|. .....||.-.+-+. .--|+|+|+|+.|||+|+..+
T Consensus 253 En~~--~R~~GtVTVRt~G~--g~G~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~ 305 (508)
T PRK00969 253 ENFE--PRRRGTVTVRTAGV--GVGKVYIYREDRPS-SLSHTVVGRVTHGIELIDFAK 305 (508)
T ss_pred cccC--ccccceEEEEeecc--CceeEEEECCCCCC-CccceeEEEEecceeeeeccc
Confidence 6533 33589999988864 34568888877432 124999999999999998543
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.057 Score=60.00 Aligned_cols=112 Identities=18% Similarity=0.280 Sum_probs=65.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc-CCCCCCCCCCCccccCCeEEEeecCc-ee-eeCCCcCCCCCCCCcccCCCCCCCCC
Q 003701 23 MVFELFSDIAPKTAENFRALCTG-EKGIGPRTGKPLHYKGSFFHRVIKGS-MA-EGGDFVKRDGTSGESIYEGKFPDESP 99 (801)
Q Consensus 23 IvIELf~d~aP~t~~NFl~Lc~G-~~g~g~~~~k~~~Y~Gt~f~RIikgf-~i-qgGd~~~~~g~gg~si~g~~f~dE~~ 99 (801)
|.||||.+.||.++.-|..+..- ++.+| ...+|-+.++. |+ .-|+ ..++..+..||.
T Consensus 378 ieIELyed~APrSv~yFRr~t~l~~kpVG----------kL~Vhfay~d~~~vmfegn----------~~~~K~llPEN~ 437 (512)
T COG4070 378 IEIELYEDRAPRSVWYFRRSTGLKTKPVG----------KLKVHFAYDDTYLVMFEGN----------AVLAKGLLPENT 437 (512)
T ss_pred EEEEecCCCCchhhHHHHhhccccccccc----------ceEEEEEeCCceEEEEcCC----------hHHhccCCCCCC
Confidence 99999999999999999988621 22222 23445455552 22 1121 222344556665
Q ss_pred CCCCCCCeEEEeeccCCCCccceEEEEccCCCCCC------CCCcEEEEEEeCHHHHHHHHh
Q 003701 100 RLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLD------RKYVVFGELVQGHEILKKIEN 155 (801)
Q Consensus 100 ~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LD------gk~tVFGkVV~G~dVL~kIe~ 155 (801)
......+|.|++.|......| ..-+-|.+...+. ....|+|+|++|.+-|..|+.
T Consensus 438 P~d~Ve~g~iGvTN~a~r~~G-mIGVRL~dsdefGPTGE~Fe~TNiIGrIveg~e~l~~ike 498 (512)
T COG4070 438 PADTVEAGEIGVTNQAARHMG-MIGVRLEDSDEFGPTGEKFEGTNIIGRIVEGPERLIGIKE 498 (512)
T ss_pred chhheecccccccccchhccc-eeEEEeccccccCCCCCccccceeehhhccChHHhccccc
Confidence 555666777777665322222 1223344432221 135789999999999988876
No 36
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.24 Score=55.24 Aligned_cols=106 Identities=24% Similarity=0.325 Sum_probs=66.1
Q ss_pred CceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCCcccCCCCCC
Q 003701 17 GDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPD 96 (801)
Q Consensus 17 ~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~si~g~~f~d 96 (801)
+..+-.|.|||-.+ +|..+++|++|.. . |+.=..+..+-+| +.+.+.+.+++.
T Consensus 199 drifTy~eve~s~n-sP~saEH~lalme--d-------------G~lri~~~tntfi-----------s~~~lq~~~~~~ 251 (512)
T COG4070 199 DRIFTYFEVELSRN-SPKSAEHFLALME--D-------------GTLRIDVTTNTFI-----------SDDTLQEEKVPE 251 (512)
T ss_pred CEEEEEEEEEeCCC-CchhHHHHHHHhh--c-------------ceEEEEEecccee-----------eccccccccCCh
Confidence 34445677787766 9999999999874 1 1111111222222 122333455666
Q ss_pred CCCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHH
Q 003701 97 ESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIE 154 (801)
Q Consensus 97 E~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe 154 (801)
||+.+. .+|.|.+-|.| ......||.-.+-+.. -.|+|+|+|++||++|+-.+
T Consensus 252 en~d~R--erG~iTvRn~G--vgeGrvYIyRedR~ss-~sHnvVGrV~eGiELid~a~ 304 (512)
T COG4070 252 ENFDLR--ERGAITVRNVG--VGEGRVYIYREDRPSS-LSHNVVGRVIEGIELIDLAE 304 (512)
T ss_pred hhhhhh--hcceEEEEeee--cccceEEEEecCCCCc-cccceeeeeecceEEEEecc
Confidence 665443 57899888875 3345788887763321 24899999999999988543
No 37
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=91.82 E-value=0.00016 Score=82.06 Aligned_cols=24 Identities=8% Similarity=0.165 Sum_probs=16.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 003701 23 MVFELFSDIAPKTAENFRALCTGE 46 (801)
Q Consensus 23 IvIELf~d~aP~t~~NFl~Lc~G~ 46 (801)
+.|.|-..+.-..|.++|.+|..+
T Consensus 476 LKmkip~~q~~elc~mii~cc~Qe 499 (739)
T KOG2140|consen 476 LKMKIPESQEKELCNMIIDCCAQE 499 (739)
T ss_pred HhccCCchhhHHHHHHHHHHhhhH
Confidence 445555566677888999999743
No 38
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=90.65 E-value=0.36 Score=47.21 Aligned_cols=12 Identities=8% Similarity=0.136 Sum_probs=5.3
Q ss_pred cEEEEEEeCHHH
Q 003701 138 VVFGELVQGHEI 149 (801)
Q Consensus 138 tVFGkVV~G~dV 149 (801)
..||.-|.|...
T Consensus 22 ~a~~~~~rCQKC 33 (177)
T KOG3116|consen 22 SAVGSSARCQKC 33 (177)
T ss_pred hhcccchhHHHH
Confidence 345554444333
No 39
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=90.59 E-value=0.55 Score=44.79 Aligned_cols=103 Identities=22% Similarity=0.310 Sum_probs=53.2
Q ss_pred EEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCCccc
Q 003701 11 MDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIY 90 (801)
Q Consensus 11 ~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~si~ 90 (801)
+.+++|+. .|.++|+.. .|++.|++++- .+..-..|.+-.++.+
T Consensus 3 I~i~i~~~---~~~a~L~d~---~ta~~~~~~LP-------lt~~~~~~g~E~y~~~----------------------- 46 (120)
T PF04126_consen 3 IKITIGGQ---EIEAELNDS---PTARAFAAQLP-------LTVTMNDWGNEKYFSL----------------------- 46 (120)
T ss_dssp EEEEETTE---EEEEEEETT---HHHHHHHHC-S-------EEEEEEECTTEEEEE------------------------
T ss_pred EEEEECCE---EEEEEECCC---HHHHHHHHhCC-------eEEEHHHCCceEEEeC-----------------------
Confidence 56677763 499999999 88999999883 1111112221111111
Q ss_pred CCCCC-CCCCCCCCCCCeEEEeeccCCCCccceEEEEccCCC-------CCCCCCcEEEEEEeCHHHHHHHHh
Q 003701 91 EGKFP-DESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANH-------SLDRKYVVFGELVQGHEILKKIEN 155 (801)
Q Consensus 91 g~~f~-dE~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~-------~LDgk~tVFGkVV~G~dVL~kIe~ 155 (801)
...+. +|... .-...|.|++-.. |..|.|-+++.+ .+-...++||+|+.|.++|++|..
T Consensus 47 p~~l~~~~~~~-~~~~~GDi~Yw~p-----g~~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 47 PLKLPTEENPR-SSVEAGDIAYWPP-----GGALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp S-----SSSEE-SSB-TTEEEEECC-----CTEEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred CCCCCcccCcc-ccccCceEEEeCC-----CCEEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 01111 12222 2235777777332 345666666653 344567999999999999888764
No 40
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.87 E-value=0.25 Score=52.05 Aligned_cols=28 Identities=39% Similarity=0.526 Sum_probs=15.0
Q ss_pred ccCcCCCCchhhhhcccccCCCCCCCCC
Q 003701 202 KKGKHKKSSRNKRRKRRRYSSSDSETSS 229 (801)
Q Consensus 202 ~k~KkKKssK~k~kKkr~~~ss~s~s~s 229 (801)
+..+.|+..++.++++++...+++.+++
T Consensus 169 k~~~~k~t~s~rKkkkRrrd~SdssSDS 196 (306)
T KOG2985|consen 169 KGSSVKKTSSVRKKKKRRRDESDSSSDS 196 (306)
T ss_pred ccCccccccchhhhhhhccccccccccc
Confidence 3345555556555666665555554444
No 41
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=87.49 E-value=3.8 Score=42.57 Aligned_cols=12 Identities=8% Similarity=-0.017 Sum_probs=6.0
Q ss_pred CCCCCCCCccce
Q 003701 779 SSGSPDGRKGLV 790 (801)
Q Consensus 779 ~~~~~~~~~~~~ 790 (801)
..-++++.++.+
T Consensus 244 ~pk~~e~e~~~s 255 (256)
T KOG4207|consen 244 PPKSREEEGSPS 255 (256)
T ss_pred CCCCcccccCCC
Confidence 444555555443
No 42
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=87.00 E-value=7.8 Score=45.32 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=11.0
Q ss_pred CCCCCcEEEEEEEeC
Q 003701 2 AKKKSLLVFMDVSID 16 (801)
Q Consensus 2 ~~~~np~v~~dtsig 16 (801)
+++..+++||.|.++
T Consensus 248 Pk~d~rh~~fVisld 262 (615)
T KOG0526|consen 248 PKKDQRHVYFVISLD 262 (615)
T ss_pred cCCCCceEEEEEecC
Confidence 456667888888875
No 43
>PHA03001 putative virion core protein; Provisional
Probab=85.35 E-value=2.3 Score=40.88 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=39.9
Q ss_pred cEEEEEEEeCCceeeeEEEEEcCCCChH------HHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCc
Q 003701 7 LLVFMDVSIDGDPVERMVFELFSDIAPK------TAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGS 71 (801)
Q Consensus 7 p~v~~dtsig~~~~GRIvIELf~d~aP~------t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf 71 (801)
.-|||++..|... |.|++-...||. ++++||++.. |-..-+.++|+-++++.
T Consensus 4 vNIfLEsd~grvk---l~~~~~~~~~~~~~~~~ka~~~fl~~L~----------kYi~v~eStFylvvrd~ 61 (132)
T PHA03001 4 VNIFLETDAGRVK---LAIENPDKVCATKAEMRKAINKFLELLK----------KYIHVDKSTFYLVVKDK 61 (132)
T ss_pred eEEEEeccCCceE---EEEcCCCccccccchHHHHHHHHHHHHH----------hhEEecccEEEEEEecC
Confidence 3588999887632 777777777775 7789999984 45567899999999884
No 44
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=83.12 E-value=0.29 Score=54.38 Aligned_cols=111 Identities=14% Similarity=0.057 Sum_probs=69.4
Q ss_pred HHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCCcccCCCCCCCCCCCCCCCCeEEEeeccC
Q 003701 36 AENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIAD 115 (801)
Q Consensus 36 ~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~si~g~~f~dE~~~l~h~~~G~Vsma~~g 115 (801)
+.+||-+. |++..|.+||...+|.+++=...+.-.+-..+. ..|++.|+..+|.+|+......+|+..-+|.+ |
T Consensus 70 iK~FMiQg-GDfs~gnGtGGeSIYG~~FdDEnF~lKHdrpfl--LSMAN~GpNTNgSQFFITT~p~PHLdGkHVVF---G 143 (372)
T KOG0546|consen 70 IKNFMIQG-GDFSEGNGTGGESIYGEKFDDENFELKHDRPFL--LSMANRGPNTNGSQFFITTVPTPHLDGKHVVF---G 143 (372)
T ss_pred eecceeec-cccccCCCCCcccccccccccccceeccCcchh--hhhhcCCCCCCCcceEEeCCCCCCcCCceeEE---e
Confidence 57888877 888888999999999876544443222222222 24777778888888888877777776666766 3
Q ss_pred CCCccceEEEEccCCCCCCC-CCcEEEEEEeCHHHHHH
Q 003701 116 RDTLGSQFIITFKANHSLDR-KYVVFGELVQGHEILKK 152 (801)
Q Consensus 116 ~~~nGSqFfItL~~~~~LDg-k~tVFGkVV~G~dVL~k 152 (801)
....|-...-+|+++..-.. +.++-..|.+|.+++++
T Consensus 144 qVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 144 QVIKGKEVVREIENLETDEESKPLADVVISDCGELVKK 181 (372)
T ss_pred eEeechhHHHHHhccccccCCCCccceEeccccccccc
Confidence 33334444344444332222 35555556677777654
No 45
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=79.72 E-value=4.2 Score=39.07 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=36.3
Q ss_pred EEEEEEEeCCceeeeEEEEEcCCCChH-------HHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCc
Q 003701 8 LVFMDVSIDGDPVERMVFELFSDIAPK-------TAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGS 71 (801)
Q Consensus 8 ~v~~dtsig~~~~GRIvIELf~d~aP~-------t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf 71 (801)
-|||++..|.. +|.|++-..+|+. +++.||+... |-..-+.++|+-++++.
T Consensus 5 NIfLEsd~grv---kl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~----------kyI~veeStFylvvrd~ 62 (130)
T PF06138_consen 5 NIFLESDSGRV---KLRYEEPDCKCARTGCEARRAVKHFLSVLK----------KYIDVEESTFYLVVRDK 62 (130)
T ss_pred EEEEeccCcee---EEEEeCCCcccccccchHHHHHHHHHHHHH----------hhEEecccEEEEEEecC
Confidence 57888887762 2555555655554 5889999984 34556889999999884
No 46
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=78.42 E-value=3.5 Score=48.39 Aligned_cols=11 Identities=9% Similarity=0.156 Sum_probs=5.1
Q ss_pred CccccCCeEEE
Q 003701 56 PLHYKGSFFHR 66 (801)
Q Consensus 56 ~~~Y~Gt~f~R 66 (801)
.+||+.+.|..
T Consensus 219 ~~yf~ds~~~q 229 (757)
T KOG4368|consen 219 NGYFDDSIIQQ 229 (757)
T ss_pred cCchhHHHHHH
Confidence 44555544443
No 47
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=73.67 E-value=2.4 Score=44.42 Aligned_cols=6 Identities=17% Similarity=0.495 Sum_probs=2.4
Q ss_pred chhHhh
Q 003701 256 SDDRRK 261 (801)
Q Consensus 256 ~~~krk 261 (801)
..++++
T Consensus 84 k~kkkk 89 (225)
T PF10500_consen 84 KRKKKK 89 (225)
T ss_pred hhhhhh
Confidence 334443
No 48
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=53.63 E-value=19 Score=42.08 Aligned_cols=7 Identities=14% Similarity=0.007 Sum_probs=4.4
Q ss_pred HHHHHHh
Q 003701 37 ENFRALC 43 (801)
Q Consensus 37 ~NFl~Lc 43 (801)
..||++.
T Consensus 38 ~QflQ~h 44 (653)
T KOG2548|consen 38 IQFLQAH 44 (653)
T ss_pred HHHHHHh
Confidence 4666665
No 49
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=53.46 E-value=2 Score=47.97 Aligned_cols=48 Identities=21% Similarity=0.343 Sum_probs=28.1
Q ss_pred EEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEe
Q 003701 10 FMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRV 67 (801)
Q Consensus 10 ~~dtsig~~~~GRIvIELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RI 67 (801)
|+.+.+.|..-|.|.-+|.+ +||- +|....|.+||...+|-..+-..+
T Consensus 40 FiqKOGegyy~nt~fhrlvp--------~f~~--Qggdp~~~gtGgesiyg~~fadE~ 87 (439)
T KOG0885|consen 40 FIQLCLEGYYDNTEFHRLVP--------GFLV--QGGDPTGTGTGGESIYGRPFADEF 87 (439)
T ss_pred HHHHHHhccccCceeeeecc--------chhc--ccCCCCCCCCCccccccccchhhc
Confidence 34445555544556555544 5654 455566777888888876654433
No 50
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=51.78 E-value=21 Score=38.70 Aligned_cols=93 Identities=18% Similarity=0.278 Sum_probs=51.3
Q ss_pred eeeeEEEEEcCCCChHHHHHHHHHhc--cCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCCcccCCCCCC
Q 003701 19 PVERMVFELFSDIAPKTAENFRALCT--GEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPD 96 (801)
Q Consensus 19 ~~GRIvIELf~d~aP~t~~NFl~Lc~--G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~si~g~~f~d 96 (801)
.+|+|.+.||+...+..++.-+.|+. |++ ..-|-|+.|..-..- +..+-..|.-+.|..+|.|
T Consensus 165 ~lgrld~kl~a~ae~dn~kaa~rl~sdmgef--------fmp~pg~rinq~~~~-------l~~~g~~g~asyyevkf~d 229 (297)
T PF07174_consen 165 VLGRLDLKLFASAEPDNTKAAVRLASDMGEF--------FMPYPGTRINQETTP-------LDANGMPGSASYYEVKFTD 229 (297)
T ss_pred EeccccccccccccCChHHHHHHHhccccce--------eccCCCccccccccc-------cccCCcccceeEEEEEecc
Confidence 46999999999988888888888874 222 223555544422211 1111112334567778888
Q ss_pred CCCCCCCCCCeEEEeecc-CCCCcc-ceEEEE
Q 003701 97 ESPRLKHDRPGLLSMSIA-DRDTLG-SQFIIT 126 (801)
Q Consensus 97 E~~~l~h~~~G~Vsma~~-g~~~nG-SqFfIt 126 (801)
.+......-.|+|+.... +.+... -.|||+
T Consensus 230 ~~kp~gqiw~~vvg~p~~~~~~~~~~~rwfvv 261 (297)
T PF07174_consen 230 ANKPNGQIWAGVVGSPVAPGTPRGTPQRWFVV 261 (297)
T ss_pred CCCCCCceEEEeecCcCCCCCCCCCCceEEEE
Confidence 765444444566654222 222222 346664
No 51
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=51.30 E-value=15 Score=34.20 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=17.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHh
Q 003701 21 ERMVFELFSDIAPKTAENFRALC 43 (801)
Q Consensus 21 GRIvIELf~d~aP~t~~NFl~Lc 43 (801)
|.-++||+... |.++..+..-.
T Consensus 13 g~c~~eL~ee~-pE~vr~i~d~l 34 (126)
T COG2164 13 GHCTGELDEEN-PESVRRIYDSL 34 (126)
T ss_pred ceEEEEccccC-hHHHHHHHHhC
Confidence 55899999887 99988776654
No 52
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=41.75 E-value=12 Score=39.33 Aligned_cols=101 Identities=20% Similarity=0.089 Sum_probs=52.9
Q ss_pred HHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCCcccCCCCCCC-----CCCCCCCCCeEEEee
Q 003701 38 NFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDE-----SPRLKHDRPGLLSMS 112 (801)
Q Consensus 38 NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~si~g~~f~dE-----~~~l~h~~~G~Vsma 112 (801)
.|+... |++.-+.+||...+|...+=...+.-.+-..|.++ +.+.|...+|.+|..- -+..+|...|.|.
T Consensus 192 ~fmcqg-gdftn~ngtggksiygkkfddenf~lkht~pgtls--mansgantngsqffict~ktdwldgkhvvfghv~-- 266 (298)
T KOG0111|consen 192 KFMCQG-GDFTNGNGTGGKSIYGKKFDDENFTLKHTMPGTLS--MANSGANTNGSQFFICTEKTDWLDGKHVVFGHVV-- 266 (298)
T ss_pred hhhccC-CccccCCCCCCcccccccccccceeeecCCCceee--ccccCCCCCCceEEEEecccccccCceeEEeeec--
Confidence 455444 56666777888888853322222111122223221 3344444445555332 3445666666653
Q ss_pred ccCCCCccceEEEEccCCCCCCCCCcEEEEEEeCHHH
Q 003701 113 IADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEI 149 (801)
Q Consensus 113 ~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dV 149 (801)
.|...+-.++.+..-+|+....-+|++|.|+
T Consensus 267 ------eg~~vvrq~e~qgsksgkp~qkv~i~~cge~ 297 (298)
T KOG0111|consen 267 ------EGMNVVRQVEQQGSKSGKPQQKVKIVECGEI 297 (298)
T ss_pred ------chHHHHHHHHhccCCCCCcceEEEEEecccc
Confidence 2333444455667777877777778877654
No 53
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=41.56 E-value=26 Score=43.64 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=25.6
Q ss_pred CCCccceEEEE-----------ccCCCCCCCCCcEE---EEEEeCHHHH
Q 003701 116 RDTLGSQFIIT-----------FKANHSLDRKYVVF---GELVQGHEIL 150 (801)
Q Consensus 116 ~~~nGSqFfIt-----------L~~~~~LDgk~tVF---GkVV~G~dVL 150 (801)
.+-+|.|..|+ |..+|.||...++| |.|+.+|..+
T Consensus 1274 FHP~g~eVIINSEIwD~RTF~lLh~VP~Ldqc~VtFNstG~VmYa~~~~ 1322 (1516)
T KOG1832|consen 1274 FHPSGNEVIINSEIWDMRTFKLLHSVPSLDQCAVTFNSTGDVMYAMLNI 1322 (1516)
T ss_pred ccCCCceEEeechhhhhHHHHHHhcCccccceEEEeccCccchhhhhhh
Confidence 35567777776 45579999987777 8888887733
No 54
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]
Probab=39.27 E-value=77 Score=33.82 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=30.7
Q ss_pred EEEEEEeCCceeee-EEEEEcCCCChHHHHHHHHHh
Q 003701 9 VFMDVSIDGDPVER-MVFELFSDIAPKTAENFRALC 43 (801)
Q Consensus 9 v~~dtsig~~~~GR-IvIELf~d~aP~t~~NFl~Lc 43 (801)
=+++|+.-+.++|+ +||.++...||..|..|++|+
T Consensus 71 h~w~i~w~~r~~GT~avVGIaTk~Aplha~gy~aLl 106 (242)
T KOG3953|consen 71 HAWEIAWPNRQRGTHAVVGIATKVAPLHAVGYTALL 106 (242)
T ss_pred eEEEEEecCCccCCcceEEEEcccCchhhhHHHHHh
Confidence 35677777778888 899999999999999999998
No 55
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]
Probab=37.25 E-value=13 Score=44.69 Aligned_cols=14 Identities=14% Similarity=0.394 Sum_probs=7.5
Q ss_pred CCCCCCCcEEEEEE
Q 003701 131 HSLDRKYVVFGELV 144 (801)
Q Consensus 131 ~~LDgk~tVFGkVV 144 (801)
+.++-.-+|||.|.
T Consensus 678 ~k~sln~~IfgD~d 691 (883)
T KOG2138|consen 678 PKVSLNQTIFGDVD 691 (883)
T ss_pred ccchHHHHHhccch
Confidence 33344456666665
No 56
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.63 E-value=65 Score=37.45 Aligned_cols=11 Identities=18% Similarity=0.003 Sum_probs=6.2
Q ss_pred ccCCeEEEeec
Q 003701 59 YKGSFFHRVIK 69 (801)
Q Consensus 59 Y~Gt~f~RIik 69 (801)
.+|+.+..|..
T Consensus 16 ~~g~~~~~ve~ 26 (483)
T KOG2236|consen 16 SNGVKEDQVES 26 (483)
T ss_pred hccccccccCc
Confidence 56666655544
No 57
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=35.63 E-value=8.6 Score=43.34 Aligned_cols=15 Identities=13% Similarity=0.018 Sum_probs=7.3
Q ss_pred ChHHHHHHHHHhccC
Q 003701 32 APKTAENFRALCTGE 46 (801)
Q Consensus 32 aP~t~~NFl~Lc~G~ 46 (801)
++.+-+-|-.||.|.
T Consensus 96 q~~~eapRE~~ak~~ 110 (453)
T KOG3794|consen 96 QRKYEAPREKLAKAP 110 (453)
T ss_pred cccccccHHHHhcCC
Confidence 333344555566543
No 58
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.44 E-value=14 Score=41.43 Aligned_cols=141 Identities=12% Similarity=0.069 Sum_probs=82.6
Q ss_pred EEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceee---------eCCCcCCCCCCCCcccCCCCCC
Q 003701 26 ELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAE---------GGDFVKRDGTSGESIYEGKFPD 96 (801)
Q Consensus 26 ELf~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iq---------gGd~~~~~g~gg~si~g~~f~d 96 (801)
-.-.+.-|+.|..||+-+.... .-||.|+....|.+|+++. .|-+..-. ..|..+-++.
T Consensus 70 ~st~e~pPL~~iefL~rv~dv~--------~eyFg~~s~~~Ik~N~~vv~ell~emiDnGfpl~tE----~NiLke~i~p 137 (418)
T KOG2740|consen 70 VSTVETPPLMVIEFLHRVVDVL--------LEYFGGLSESKIKDNVVVVYELLDEMIDNGFPLVTE----PNILKELIPP 137 (418)
T ss_pred EEeccCCChhHHHHHHHHHHHH--------HHHhcccCHhHhhcceeeHHHHHHHHHHcCCCcccC----hhHHHhhcCC
Confidence 3334556999999998875332 4578888888888886443 33222110 0111111111
Q ss_pred C----------------CCCCCCCCCeEEEeeccCCCCccceEEEEccC----CCCCCCCCcEEEEEEeCHHHHHHHHhc
Q 003701 97 E----------------SPRLKHDRPGLLSMSIADRDTLGSQFIITFKA----NHSLDRKYVVFGELVQGHEILKKIENV 156 (801)
Q Consensus 97 E----------------~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~----~~~LDgk~tVFGkVV~G~dVL~kIe~~ 156 (801)
- ...|+....-+|=|-..+......+|||.+-. .-.-+| -+|||.|-.-+|+.-+|..+
T Consensus 138 ps~l~~~~~svTg~~n~~~~lPtg~~s~VPWR~~~~Ky~nNE~yvdvlEeidai~~k~g-slv~~eI~g~vd~~~qLsgm 216 (418)
T KOG2740|consen 138 PSFLSKKFNSVTGNSNVSDTLPTGALSNVPWRTAGVKYTNNEAYVDVLEEIDAIVDKKG-SLVFGEIQGIVDVCSQLSGM 216 (418)
T ss_pred hHHHHHHHhhhhccccccccCCCcccccccccccCcccccchhhhhhhheeheEecCCC-CEEEEEEEEEEEEEEeecCC
Confidence 0 11244444455666666766777888887632 222333 49999988778887777654
Q ss_pred -----CCCCCCccccEEEEEeeeccccc
Q 003701 157 -----GDEEGRLTVTVKIINCGEVSEDK 179 (801)
Q Consensus 157 -----~~~~g~P~~~v~I~~~g~l~~~~ 179 (801)
.-.++..+-.+.+..|-.+..-.
T Consensus 217 Pdltlsl~np~~L~dvsfHpcVr~krwe 244 (418)
T KOG2740|consen 217 PDLTLSLNNPRLLGDVSFHPCVRYKRWE 244 (418)
T ss_pred CceEEEccCccccCCcccccceeecccc
Confidence 22446777777777787765433
No 59
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=35.32 E-value=31 Score=35.41 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=10.3
Q ss_pred HHHHHHHHhccCC
Q 003701 35 TAENFRALCTGEK 47 (801)
Q Consensus 35 t~~NFl~Lc~G~~ 47 (801)
.+.+||++|+++.
T Consensus 55 elg~flh~Cegd~ 67 (215)
T KOG3262|consen 55 ELGKFLHMCEGDL 67 (215)
T ss_pred hhhhhhhhcCCce
Confidence 4569999999765
No 60
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=32.40 E-value=1.2e+02 Score=32.28 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=25.7
Q ss_pred CccceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc
Q 003701 118 TLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV 156 (801)
Q Consensus 118 ~nGSqFfItL~~~~~LDgk~tVFGkVV~G~dVL~kIe~~ 156 (801)
.+|..|||.+..... +..|-|=-.|+--|+|..|+..
T Consensus 81 k~gn~FyliIDr~~~--~enV~fLn~VdE~DLl~l~e~~ 117 (218)
T PF14283_consen 81 KSGNTFYLIIDRDEE--GENVYFLNQVDEADLLALMEEE 117 (218)
T ss_pred cCCCEEEEEEecCCC--cceEEEeccCCHHHHHHHHhcc
Confidence 467788888876555 3357777777778888877653
No 61
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=31.82 E-value=18 Score=40.94 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=44.5
Q ss_pred HHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeee-CCCcCCCCCCCCcccCCCCCCCCCCCCCCCCeEE
Q 003701 35 TAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEG-GDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLL 109 (801)
Q Consensus 35 t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqg-Gd~~~~~g~gg~si~g~~f~dE~~~l~h~~~G~V 109 (801)
.+.||| ++|....|.++|.+.+|..-+-..+..++.-.| |.+ .|++.|...+|.+|+..+-.++|+..-+-
T Consensus 322 sIrnFm--iQGGDPTGTG~GGeSiWgKpFkDEf~~~l~H~gRGvl--SMANsGpnTNgSQFFItyrsckhLd~KHT 393 (518)
T KOG0883|consen 322 SIRNFM--IQGGDPTGTGRGGESIWGKPFKDEFCSNLSHDGRGVL--SMANSGPNTNGSQFFITYRSCKHLDNKHT 393 (518)
T ss_pred HHHHHe--eeCCCCCCCCCCCccccCCccccccCCCCCcCCcceE--eeccCCCCCCCceEEEEecchhhccccce
Confidence 445665 456666777788888887666566655552222 222 37777888888888777655555444333
No 62
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=31.57 E-value=20 Score=38.49 Aligned_cols=8 Identities=25% Similarity=0.841 Sum_probs=3.7
Q ss_pred ceEEEEcc
Q 003701 121 SQFIITFK 128 (801)
Q Consensus 121 SqFfItL~ 128 (801)
+|++|.+.
T Consensus 116 TQylir~r 123 (303)
T KOG3064|consen 116 TQYLIRMR 123 (303)
T ss_pred HHHHHHHH
Confidence 44444443
No 63
>COG4925 Uncharacterized conserved protein [Function unknown]
Probab=29.26 E-value=3.1e+02 Score=27.15 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=19.0
Q ss_pred eEEEEccCCCCCCCCCcEEEEEEeCHHHHHH
Q 003701 122 QFIITFKANHSLDRKYVVFGELVQGHEILKK 152 (801)
Q Consensus 122 qFfItL~~~~~LDgk~tVFGkVV~G~dVL~k 152 (801)
.|+--+.-. +....+|+|+.|++.|..
T Consensus 129 iF~k~f~ys----~~L~~LGkidsG~e~i~~ 155 (166)
T COG4925 129 IFYKRFGYS----GGLYELGKIDSGGEHIKN 155 (166)
T ss_pred EEEcccccc----ccceecceeecchHhhcC
Confidence 355555433 456778999999999874
No 64
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=28.33 E-value=3.9e+02 Score=26.85 Aligned_cols=101 Identities=18% Similarity=0.340 Sum_probs=0.0
Q ss_pred EEEEEcCC--CChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCCcCCCCCCCCcccCCCCCCCCCC
Q 003701 23 MVFELFSD--IAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDESPR 100 (801)
Q Consensus 23 IvIELf~d--~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~~~~~g~gg~si~g~~f~dE~~~ 100 (801)
|.||+|+. .-|.|++.||+.+..-.|+ .-.+|||-.+-.....| +..-..
T Consensus 1 iqieIfP~R~L~peTtEklLN~l~~i~GI-------------------~R~vi~Gp~LPk~VpyG---------Pa~G~p 52 (153)
T PF02505_consen 1 IQIEIFPHRLLKPETTEKLLNELYSIEGI-------------------RRVVIHGPRLPKTVPYG---------PARGTP 52 (153)
T ss_pred CcEEEechhcCCHHHHHHHHHHHhccCCE-------------------EEEEEECCCCCCCCCCC---------CCCCCc
Q ss_pred CCCCCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEE---eC-HHHHHHHHhcCCCCCCccccEEE
Q 003701 101 LKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELV---QG-HEILKKIENVGDEEGRLTVTVKI 169 (801)
Q Consensus 101 l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV---~G-~dVL~kIe~~~~~~g~P~~~v~I 169 (801)
..|..+-+|-+ .|.++-. .+-.|.|+ +. .+++++|+.+..+.--.-+.|..
T Consensus 53 v~h~~Rk~I~V-------~g~~veL-----------~V~vGri~lele~~~~~ie~I~~iCee~lpf~y~i~~ 107 (153)
T PF02505_consen 53 VNHPDRKVINV-------GGEEVEL-----------TVKVGRIILELEDEEDVIEKIREICEEVLPFGYDIKE 107 (153)
T ss_pred CCCCcceEEEE-------CCEEEEE-----------EEEEeEEEEEecCcHHHHHHHHHHHHHhCCCceEeee
No 65
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=27.82 E-value=60 Score=26.27 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=21.1
Q ss_pred CcEEEEEEEeCCceeeeEEEEEcCCCChHHH
Q 003701 6 SLLVFMDVSIDGDPVERMVFELFSDIAPKTA 36 (801)
Q Consensus 6 np~v~~dtsig~~~~GRIvIELf~d~aP~t~ 36 (801)
.-.++|.+.+.| .||+||||.+++|-...
T Consensus 16 gR~ivmRvPleG--GGRLVvEl~~~Ea~~L~ 44 (51)
T PF11314_consen 16 GRGIVMRVPLEG--GGRLVVELNPDEAKELG 44 (51)
T ss_pred CceEEEEEecCC--CcEEEEEeCHHHHHHHH
Confidence 335677777766 59999999998764433
No 66
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=27.54 E-value=33 Score=40.45 Aligned_cols=6 Identities=17% Similarity=0.368 Sum_probs=2.1
Q ss_pred eEEEEE
Q 003701 22 RMVFEL 27 (801)
Q Consensus 22 RIvIEL 27 (801)
|..|.|
T Consensus 215 RYdI~i 220 (615)
T KOG0526|consen 215 RYDIKI 220 (615)
T ss_pred cceeEE
Confidence 333333
No 67
>COG5226 CEG1 mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=26.90 E-value=2e+02 Score=32.05 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=21.4
Q ss_pred CCCCCCCCCeEEEeeccCCC---------------CccceEEEEccC
Q 003701 98 SPRLKHDRPGLLSMSIADRD---------------TLGSQFIITFKA 129 (801)
Q Consensus 98 ~~~l~h~~~G~Vsma~~g~~---------------~nGSqFfItL~~ 129 (801)
...|+|...|+|-.....|. .|...|...|.-
T Consensus 213 ip~L~HgnDGLIFTp~~~PY~~Gkd~~lLKWKP~~~NTiDF~lvl~~ 259 (404)
T COG5226 213 IPELKHGNDGLIFTPADEPYSVGKDGALLKWKPASLNTIDFRLVLHK 259 (404)
T ss_pred cccccCCCCceEeccCCCCcccCccceeeecCccccCceeeeeeecc
Confidence 45689999999877664333 355667776643
No 68
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=26.71 E-value=31 Score=39.15 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=34.8
Q ss_pred CCCeEEEeeccCCCCccceEEEEccCCCCCCCCCcEEEEEEe-CHHHHHHHHh
Q 003701 104 DRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQ-GHEILKKIEN 155 (801)
Q Consensus 104 ~~~G~Vsma~~g~~~nGSqFfItL~~~~~LDgk~tVFGkVV~-G~dVL~kIe~ 155 (801)
-..|.|.+.|..-...-.+.=|++.+.|. |++..|+|+|++ -+.+|+.|..
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred ccCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCC
Confidence 45899999988666777899999999886 788899999996 6888888764
No 69
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=26.58 E-value=62 Score=39.00 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=9.2
Q ss_pred HHHHHHHHhccCC
Q 003701 35 TAENFRALCTGEK 47 (801)
Q Consensus 35 t~~NFl~Lc~G~~ 47 (801)
.-+.|++-|.|+.
T Consensus 698 ikhlfFq~c~gEl 710 (1001)
T COG5406 698 IKHLFFQECNGEL 710 (1001)
T ss_pred chhheeccCCceE
Confidence 4477888898753
No 70
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=25.62 E-value=33 Score=40.65 Aligned_cols=50 Identities=14% Similarity=0.061 Sum_probs=35.5
Q ss_pred CCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCCC
Q 003701 29 SDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDF 78 (801)
Q Consensus 29 ~d~aP~t~~NFl~Lc~G~~g~g~~~~k~~~Y~Gt~f~RIikgf~iqgGd~ 78 (801)
.+++|..|-.|...-.=..|+.-..+-..|-.||++|.+..|.++..|.-
T Consensus 590 neitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~T 639 (752)
T KOG0670|consen 590 NEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRT 639 (752)
T ss_pred ccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCC
Confidence 45789999999865433333332333455778999999999999988854
No 71
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=24.10 E-value=1.3e+02 Score=36.65 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=7.1
Q ss_pred CCCcEEEEE
Q 003701 4 KKSLLVFMD 12 (801)
Q Consensus 4 ~~np~v~~d 12 (801)
..||+||-|
T Consensus 18 aeNPLVYCD 26 (900)
T KOG0956|consen 18 AENPLVYCD 26 (900)
T ss_pred ccCceeeec
Confidence 469999976
No 72
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=22.11 E-value=1.9e+02 Score=33.40 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=21.7
Q ss_pred ccceEEEEcc------------CCCCCCCCCcEEEEEEeCHHHHHHHHh
Q 003701 119 LGSQFIITFK------------ANHSLDRKYVVFGELVQGHEILKKIEN 155 (801)
Q Consensus 119 nGSqFfItL~------------~~~~LDgk~tVFGkVV~G~dVL~kIe~ 155 (801)
....|+.||. ++..|+...+-+++.|--+++|.++-.
T Consensus 231 ~~~~~~~t~r~~g~~~~i~~L~~lGll~~~~v~~~~~i~p~eflk~vl~ 279 (389)
T COG1748 231 VRTRFEMTFRYPGHLEVIKALRDLGLLSREPVKVQQEIVPLEFLKAVLP 279 (389)
T ss_pred ceeeEEeecCcccHHHHHHHHHHcCCCcccccccccccchHHHHHHhcc
Confidence 4566776654 456666654444455556777766543
No 73
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.73 E-value=41 Score=34.45 Aligned_cols=7 Identities=14% Similarity=0.287 Sum_probs=2.9
Q ss_pred EEEEEEe
Q 003701 139 VFGELVQ 145 (801)
Q Consensus 139 VFGkVV~ 145 (801)
|.|+-|.
T Consensus 74 i~gkei~ 80 (178)
T PF10278_consen 74 IGGKEIT 80 (178)
T ss_pred CCCccCC
Confidence 3344443
No 74
>PF12580 TPPII: Tripeptidyl peptidase II ; InterPro: IPR022229 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=21.61 E-value=56 Score=33.99 Aligned_cols=90 Identities=12% Similarity=0.219 Sum_probs=41.9
Q ss_pred cccCCeEEEeecCc---eeeeCCCcCCCCCCCCcccCCCCCCCCCCCCCCCCeEEEeeccCCCCccceEEEEccCCCCCC
Q 003701 58 HYKGSFFHRVIKGS---MAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLD 134 (801)
Q Consensus 58 ~Y~Gt~f~RIikgf---~iqgGd~~~~~g~gg~si~g~~f~dE~~~l~h~~~G~Vsma~~g~~~nGSqFfItL~~~~~LD 134 (801)
+.+|..+|.++=.+ +..+|.++.....-..-+|...|+-....+.-...-+|++.- ....+|.+.|..
T Consensus 41 lp~grqiy~L~LtY~f~~~k~~eV~p~~p~L~~~LYes~fesql~mifD~NK~~v~~gD----ayp~~y~~kL~K----- 111 (194)
T PF12580_consen 41 LPDGRQIYELVLTYNFKLAKAGEVTPRLPLLSDLLYESEFESQLWMIFDSNKQLVGSGD----AYPHRYSTKLEK----- 111 (194)
T ss_dssp ETTTEE-EEEEEEEEEEESS-EEEEEE-TTTTT-SSS-SSS---EEEE-TTS-EEEEE-----SS-TT--EEE-S-----
T ss_pred CCCCceeEEEEEEEEEecCCceeEEEecccccchhhcccccceEEEEEcCCCcEEEccc----cCCccCccccCC-----
Confidence 45666677665222 223333222111112345555554443333333444556543 344589999875
Q ss_pred CCCcEEEEEE-eCHHHHHHHHhc
Q 003701 135 RKYVVFGELV-QGHEILKKIENV 156 (801)
Q Consensus 135 gk~tVFGkVV-~G~dVL~kIe~~ 156 (801)
|.|||--+|- +..++|++|..+
T Consensus 112 GdYtlrlqiRHe~~~~LEklk~~ 134 (194)
T PF12580_consen 112 GDYTLRLQIRHEDRSLLEKLKDL 134 (194)
T ss_dssp EEEEEEEEEEES-HHHHGGGTT-
T ss_pred ccEEEEEEEecCCHHHHHHhhCC
Confidence 6799999988 689999998764
No 75
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=21.12 E-value=1e+02 Score=38.48 Aligned_cols=14 Identities=29% Similarity=0.166 Sum_probs=10.1
Q ss_pred CCCcEEEEEEEeCC
Q 003701 4 KKSLLVFMDVSIDG 17 (801)
Q Consensus 4 ~~np~v~~dtsig~ 17 (801)
+.+..+.|||+++.
T Consensus 151 ~s~g~~lfdTs~~~ 164 (805)
T KOG1065|consen 151 WSDGRVLFDTSIGP 164 (805)
T ss_pred ecCCceeeecCCCc
Confidence 34667788888877
No 76
>COG1974 LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]
Probab=20.77 E-value=2.3e+02 Score=29.66 Aligned_cols=18 Identities=39% Similarity=0.613 Sum_probs=14.1
Q ss_pred CCeEEEeecCceeeeCCC
Q 003701 61 GSFFHRVIKGSMAEGGDF 78 (801)
Q Consensus 61 Gt~f~RIikgf~iqgGd~ 78 (801)
+++|-+|.-+-|+..|.+
T Consensus 111 ~~f~L~V~GdSM~~~gi~ 128 (201)
T COG1974 111 ATFFLRVSGDSMIDAGIL 128 (201)
T ss_pred ceEEEEecCCccccCcCC
Confidence 678888877788888865
No 77
>COG5023 Tubulin [Cytoskeleton]
Probab=20.12 E-value=1e+02 Score=35.20 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHH-HHhccCCCCCC
Q 003701 23 MVFELFSDIAPKTAENFR-ALCTGEKGIGP 51 (801)
Q Consensus 23 IvIELf~d~aP~t~~NFl-~Lc~G~~g~g~ 51 (801)
=+|.|-.-+|=+.+.|++ ++..+|+||++
T Consensus 3 EIItlq~GQcGnQiG~~fWe~~c~EHGI~~ 32 (443)
T COG5023 3 EIITLQVGQCGNQIGNAFWETLCLEHGIGP 32 (443)
T ss_pred eeEEEecccchhHHHHHHHHHHHHhhCcCC
Confidence 466777777876666544 44337899874
Done!