Query 003702
Match_columns 801
No_of_seqs 343 out of 2110
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:24:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 3E-151 7E-156 1349.8 83.0 783 6-798 18-815 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 2E-122 5E-127 1084.1 57.4 753 10-776 2-767 (769)
3 PRK03562 glutathione-regulated 100.0 2.3E-46 5E-51 437.4 46.3 410 31-471 5-420 (621)
4 PRK10669 putative cation:proto 100.0 6.2E-46 1.3E-50 432.7 45.3 375 32-428 7-390 (558)
5 PRK03659 glutathione-regulated 100.0 3.9E-45 8.4E-50 426.7 46.4 411 31-471 5-420 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 5.6E-44 1.2E-48 395.9 43.9 378 31-429 6-387 (397)
7 PRK05326 potassium/proton anti 100.0 1.4E-39 3E-44 379.2 39.0 379 30-427 5-388 (562)
8 TIGR00932 2a37 transporter, mo 100.0 1.6E-34 3.5E-39 307.6 32.6 270 41-330 2-273 (273)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 3.4E-39 7.5E-44 360.4 -4.4 373 38-426 3-378 (380)
10 COG4651 RosB Kef-type K+ trans 100.0 1.3E-33 2.8E-38 282.3 30.8 380 28-431 4-392 (408)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 4.9E-28 1.1E-32 278.3 40.4 368 18-398 2-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 6.1E-28 1.3E-32 277.6 38.5 368 37-426 4-408 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 100.0 3.4E-25 7.5E-30 247.9 40.7 381 31-427 6-407 (429)
14 TIGR00840 b_cpa1 sodium/hydrog 99.9 4.1E-24 8.9E-29 245.6 38.7 376 37-427 15-417 (559)
15 COG3263 NhaP-type Na+/H+ and K 99.9 1.3E-23 2.8E-28 220.8 27.7 352 32-403 8-361 (574)
16 KOG1965 Sodium/hydrogen exchan 99.8 9.6E-20 2.1E-24 201.0 23.3 390 31-430 35-458 (575)
17 KOG4505 Na+/H+ antiporter [Ino 99.8 1E-16 2.3E-21 163.4 25.6 345 37-394 20-382 (467)
18 PRK14853 nhaA pH-dependent sod 99.8 7.5E-16 1.6E-20 168.1 34.2 300 91-424 62-393 (423)
19 PRK11175 universal stress prot 99.7 3E-16 6.6E-21 170.0 18.3 281 452-772 5-299 (305)
20 TIGR00773 NhaA Na+/H+ antiport 99.5 3E-12 6.5E-17 137.4 26.7 270 91-395 52-344 (373)
21 KOG1966 Sodium/hydrogen exchan 99.4 1.5E-13 3.2E-18 151.4 5.9 367 43-427 54-449 (670)
22 cd01988 Na_H_Antiporter_C The 99.3 1.4E-11 3.1E-16 115.7 12.8 131 452-606 1-131 (132)
23 PRK14856 nhaA pH-dependent sod 99.3 1.3E-09 2.8E-14 119.0 29.3 270 90-395 67-398 (438)
24 PRK09560 nhaA pH-dependent sod 99.3 1.6E-09 3.5E-14 116.6 26.2 270 91-395 59-353 (389)
25 PRK09561 nhaA pH-dependent sod 99.2 3.1E-09 6.8E-14 114.1 25.6 270 91-395 59-351 (388)
26 PRK14854 nhaA pH-dependent sod 99.2 9.2E-09 2E-13 110.2 27.3 272 91-396 56-349 (383)
27 PRK14855 nhaA pH-dependent sod 99.2 6.9E-09 1.5E-13 112.9 25.9 287 91-416 63-404 (423)
28 PF06965 Na_H_antiport_1: Na+/ 99.0 2.1E-09 4.6E-14 115.5 12.7 280 90-403 54-359 (378)
29 cd01989 STK_N The N-terminal d 98.9 1.1E-08 2.4E-13 98.0 12.5 139 452-606 1-143 (146)
30 COG3004 NhaA Na+/H+ antiporter 98.9 3.8E-07 8.3E-12 94.1 23.8 262 95-396 66-355 (390)
31 PRK15456 universal stress prot 98.9 9.2E-09 2E-13 98.2 9.2 134 451-606 3-141 (142)
32 PRK15005 universal stress prot 98.8 1.7E-08 3.7E-13 96.4 10.5 136 451-606 3-143 (144)
33 PRK15118 universal stress glob 98.8 2.5E-08 5.3E-13 95.4 10.6 133 451-606 4-137 (144)
34 PRK09982 universal stress prot 98.8 2E-08 4.4E-13 95.9 9.5 133 451-606 4-137 (142)
35 cd01987 USP_OKCHK USP domain i 98.8 2.8E-08 6.1E-13 92.3 10.2 122 452-606 1-123 (124)
36 PF00582 Usp: Universal stress 98.8 2.7E-08 5.8E-13 93.3 8.6 133 451-606 3-139 (140)
37 PRK10116 universal stress prot 98.6 2.3E-07 5.1E-12 88.3 11.4 136 451-608 4-139 (142)
38 cd01989 STK_N The N-terminal d 98.6 2.2E-07 4.8E-12 89.0 11.0 137 625-773 1-145 (146)
39 cd01988 Na_H_Antiporter_C The 98.5 6.4E-07 1.4E-11 83.8 11.0 131 625-772 1-132 (132)
40 PRK11175 universal stress prot 98.5 3.3E-07 7.1E-12 99.3 9.5 143 451-611 153-303 (305)
41 cd00293 USP_Like Usp: Universa 98.5 1.3E-06 2.9E-11 80.7 11.6 130 452-606 1-130 (130)
42 PRK15005 universal stress prot 98.5 9.6E-07 2.1E-11 84.3 10.2 136 623-771 2-143 (144)
43 PRK09982 universal stress prot 98.4 6.7E-07 1.5E-11 85.4 8.3 134 623-772 3-138 (142)
44 PF00582 Usp: Universal stress 98.4 7.5E-07 1.6E-11 83.3 6.8 131 623-771 2-139 (140)
45 cd01987 USP_OKCHK USP domain i 98.3 2.3E-06 5.1E-11 79.4 8.7 123 625-771 1-123 (124)
46 PRK15456 universal stress prot 98.3 4.4E-06 9.6E-11 79.6 10.2 136 623-772 2-142 (142)
47 PRK10116 universal stress prot 98.2 3.5E-06 7.6E-11 80.2 7.2 135 623-772 3-138 (142)
48 PRK15118 universal stress glob 98.1 6.8E-06 1.5E-10 78.5 8.0 134 623-773 3-139 (144)
49 COG0589 UspA Universal stress 98.0 5.4E-05 1.2E-09 72.4 11.4 143 451-607 6-151 (154)
50 PRK12460 2-keto-3-deoxyglucona 98.0 0.0018 3.9E-08 68.4 22.6 255 100-430 51-308 (312)
51 cd00293 USP_Like Usp: Universa 97.9 7.9E-05 1.7E-09 68.7 9.9 129 625-771 1-130 (130)
52 PF03812 KdgT: 2-keto-3-deoxyg 97.8 0.0045 9.8E-08 65.1 22.5 171 99-336 50-221 (314)
53 PF05684 DUF819: Protein of un 97.7 0.1 2.2E-06 58.0 32.7 291 54-400 24-351 (378)
54 PRK12652 putative monovalent c 97.6 0.00025 5.3E-09 77.7 9.8 104 622-733 4-123 (357)
55 COG0786 GltS Na+/glutamate sym 97.4 0.068 1.5E-06 58.0 25.2 156 235-391 170-359 (404)
56 PF03616 Glt_symporter: Sodium 97.4 0.13 2.7E-06 57.2 27.9 91 281-377 246-342 (368)
57 TIGR00793 kdgT 2-keto-3-deoxyg 97.4 0.012 2.6E-07 61.6 17.7 89 100-189 51-140 (314)
58 TIGR00698 conserved hypothetic 97.2 0.49 1.1E-05 51.6 29.3 84 50-142 26-110 (335)
59 COG0798 ACR3 Arsenite efflux p 97.2 0.19 4.1E-06 53.7 24.6 178 58-252 20-202 (342)
60 COG0589 UspA Universal stress 97.0 0.0075 1.6E-07 57.4 11.2 141 623-774 5-153 (154)
61 PF13593 DUF4137: SBF-like CPA 96.9 0.56 1.2E-05 50.9 26.5 113 93-215 30-147 (313)
62 TIGR00210 gltS sodium--glutama 96.9 0.68 1.5E-05 51.8 27.2 93 281-376 244-339 (398)
63 COG0385 Predicted Na+-dependen 96.9 0.76 1.7E-05 49.3 26.2 149 91-251 35-190 (319)
64 PF03390 2HCT: 2-hydroxycarbox 96.8 0.81 1.8E-05 50.8 26.4 253 109-400 109-394 (414)
65 PRK12652 putative monovalent c 96.7 0.013 2.7E-07 64.4 11.2 108 451-574 6-124 (357)
66 PF03601 Cons_hypoth698: Conse 96.6 1.2 2.6E-05 48.1 25.8 84 52-145 23-108 (305)
67 COG3493 CitS Na+/citrate sympo 96.6 0.26 5.5E-06 53.1 19.8 85 314-400 326-413 (438)
68 COG3180 AbrB Putative ammonia 96.4 2 4.4E-05 46.6 29.1 300 32-395 7-318 (352)
69 TIGR00832 acr3 arsenical-resis 96.3 1.7 3.6E-05 47.6 25.3 43 349-391 254-297 (328)
70 PRK05274 2-keto-3-deoxyglucona 96.3 0.28 6.1E-06 53.2 18.5 46 101-146 54-99 (326)
71 PRK03562 glutathione-regulated 96.2 0.15 3.3E-06 60.7 17.4 118 262-383 9-127 (621)
72 TIGR00932 2a37 transporter, mo 96.0 0.23 4.9E-06 52.8 16.4 130 269-404 3-134 (273)
73 PF05145 AmoA: Putative ammoni 95.9 3.3 7.1E-05 45.1 26.3 128 263-397 157-287 (318)
74 PF06826 Asp-Al_Ex: Predicted 95.9 0.25 5.4E-06 48.4 14.3 114 51-180 19-136 (169)
75 PF03956 DUF340: Membrane prot 95.8 0.098 2.1E-06 52.3 11.5 129 59-211 2-135 (191)
76 PRK03659 glutathione-regulated 95.8 0.36 7.8E-06 57.4 18.4 108 44-169 226-333 (601)
77 PRK10669 putative cation:proto 95.6 0.4 8.7E-06 56.6 17.6 133 265-403 13-146 (558)
78 TIGR00783 ccs citrate carrier 95.4 1.2 2.6E-05 48.5 18.5 119 281-400 203-327 (347)
79 PRK10490 sensor protein KdpD; 95.1 0.11 2.5E-06 64.6 11.3 124 449-607 249-373 (895)
80 COG0475 KefB Kef-type K+ trans 95.1 0.68 1.5E-05 52.1 16.4 137 262-406 10-152 (397)
81 PRK03818 putative transporter; 95.1 0.68 1.5E-05 54.3 16.9 126 36-179 11-141 (552)
82 PRK05326 potassium/proton anti 95.1 0.42 9.1E-06 56.5 15.4 118 264-384 12-132 (562)
83 PF03601 Cons_hypoth698: Conse 95.1 0.73 1.6E-05 49.7 15.8 129 265-396 5-139 (305)
84 PF01758 SBF: Sodium Bile acid 95.0 1.2 2.7E-05 44.4 16.6 107 98-215 2-112 (187)
85 COG2855 Predicted membrane pro 94.5 0.48 1E-05 50.8 12.5 115 275-392 30-144 (334)
86 TIGR00841 bass bile acid trans 94.5 8.2 0.00018 41.3 27.1 48 97-145 11-62 (286)
87 TIGR01625 YidE_YbjL_dupl AspT/ 94.0 0.39 8.4E-06 46.2 9.6 114 55-182 21-139 (154)
88 PLN03159 cation/H(+) antiporte 93.7 1.8 3.9E-05 53.4 17.1 45 446-493 626-670 (832)
89 TIGR03802 Asp_Ala_antiprt aspa 93.7 0.51 1.1E-05 55.5 11.9 90 40-145 15-112 (562)
90 PRK04972 putative transporter; 93.4 0.57 1.2E-05 55.0 11.7 118 37-179 18-140 (558)
91 TIGR03802 Asp_Ala_antiprt aspa 93.3 0.94 2E-05 53.3 13.3 116 52-181 412-531 (562)
92 PRK10490 sensor protein KdpD; 93.3 0.31 6.8E-06 60.8 9.7 124 622-771 249-372 (895)
93 TIGR00844 c_cpa1 na(+)/h(+) an 93.2 2 4.4E-05 51.7 15.6 71 313-385 74-146 (810)
94 TIGR00698 conserved hypothetic 93.1 3.2 6.9E-05 45.3 15.9 126 266-394 10-143 (335)
95 TIGR00831 a_cpa1 Na+/H+ antipo 92.2 1.6 3.5E-05 51.0 13.2 118 265-387 5-124 (525)
96 TIGR03082 Gneg_AbrB_dup membra 90.5 2.1 4.6E-05 41.4 10.0 98 38-149 2-101 (156)
97 TIGR03082 Gneg_AbrB_dup membra 90.4 8.7 0.00019 37.1 14.2 122 266-394 3-127 (156)
98 PRK04972 putative transporter; 89.4 3.8 8.3E-05 48.2 12.8 131 37-181 387-526 (558)
99 TIGR00946 2a69 he Auxin Efflux 89.2 9.7 0.00021 41.5 15.2 133 53-207 180-313 (321)
100 COG2985 Predicted permease [Ge 88.9 3.1 6.8E-05 46.6 10.7 78 97-183 62-146 (544)
101 COG2205 KdpD Osmosensitive K+ 88.3 2.6 5.7E-05 50.2 10.2 125 448-605 246-371 (890)
102 TIGR00210 gltS sodium--glutama 87.7 18 0.00039 40.6 16.1 168 33-211 221-394 (398)
103 PF03616 Glt_symporter: Sodium 86.8 43 0.00093 37.3 18.4 116 314-430 66-187 (368)
104 PF03547 Mem_trans: Membrane t 85.9 5.7 0.00012 44.4 11.2 136 284-427 8-146 (385)
105 PRK03359 putative electron tra 85.7 1.9 4.1E-05 45.3 6.6 108 629-756 31-149 (256)
106 TIGR00808 malonate_madM malona 85.6 11 0.00025 37.3 11.2 105 37-148 19-133 (254)
107 PRK03818 putative transporter; 85.3 23 0.0005 41.7 16.1 106 58-177 403-513 (552)
108 COG1346 LrgB Putative effector 85.0 48 0.001 33.9 16.7 110 303-425 62-171 (230)
109 COG2855 Predicted membrane pro 84.4 66 0.0014 34.9 25.0 87 50-146 32-118 (334)
110 PRK12460 2-keto-3-deoxyglucona 84.0 9.5 0.00021 40.9 10.9 75 58-145 169-243 (312)
111 PF03956 DUF340: Membrane prot 83.5 11 0.00023 37.8 10.5 49 343-391 58-106 (191)
112 COG3329 Predicted permease [Ge 82.9 32 0.0007 36.5 13.8 128 274-407 6-138 (372)
113 TIGR03136 malonate_biotin Na+- 81.1 3.1 6.7E-05 45.0 5.9 115 311-433 101-218 (399)
114 cd01984 AANH_like Adenine nucl 79.9 2.1 4.6E-05 36.4 3.7 49 550-604 35-84 (86)
115 COG2205 KdpD Osmosensitive K+ 79.9 8.3 0.00018 46.2 9.4 122 623-771 248-372 (890)
116 PRK09903 putative transporter 79.7 36 0.00078 36.9 14.0 115 53-187 171-286 (314)
117 COG1346 LrgB Putative effector 79.1 79 0.0017 32.4 14.8 42 106-147 76-117 (230)
118 PRK12342 hypothetical protein; 78.9 4.7 0.0001 42.2 6.5 104 628-755 29-145 (254)
119 COG2431 Predicted membrane pro 78.7 38 0.00082 35.5 12.6 77 57-146 108-188 (297)
120 PRK04288 antiholin-like protei 78.2 88 0.0019 32.3 17.0 105 308-425 70-174 (232)
121 PF05145 AmoA: Putative ammoni 78.1 19 0.00041 39.2 11.1 101 34-148 155-257 (318)
122 COG0025 NhaP NhaP-type Na+/H+ 76.1 58 0.0013 37.1 14.7 122 263-387 11-136 (429)
123 COG0786 GltS Na+/glutamate sym 75.9 5.1 0.00011 44.0 5.8 117 314-430 68-188 (404)
124 TIGR02432 lysidine_TilS_N tRNA 75.6 14 0.00031 36.5 8.8 36 625-660 1-36 (189)
125 COG2985 Predicted permease [Ge 75.6 12 0.00027 42.1 8.7 107 57-177 397-507 (544)
126 COG3180 AbrB Putative ammonia 75.3 1.3E+02 0.0029 32.9 16.5 99 36-148 190-290 (352)
127 PF03977 OAD_beta: Na+-transpo 74.7 3.9 8.4E-05 43.8 4.4 111 314-432 68-180 (360)
128 COG3263 NhaP-type Na+/H+ and K 74.5 37 0.00079 38.0 11.7 110 274-384 23-133 (574)
129 PF00999 Na_H_Exchanger: Sodiu 72.2 0.92 2E-05 50.6 -1.0 113 267-383 5-123 (380)
130 KOG2310 DNA repair exonuclease 71.2 7 0.00015 44.4 5.5 78 552-632 41-125 (646)
131 PF05982 DUF897: Domain of unk 69.1 31 0.00066 37.3 9.6 75 59-146 184-261 (327)
132 TIGR03136 malonate_biotin Na+- 67.9 2E+02 0.0042 31.7 21.3 256 32-340 21-306 (399)
133 TIGR01625 YidE_YbjL_dupl AspT/ 66.1 19 0.00041 34.7 6.8 88 284-371 23-116 (154)
134 PF02040 ArsB: Arsenical pump 65.0 2.5E+02 0.0054 31.9 23.6 36 171-206 117-152 (423)
135 COG1646 Predicted phosphate-bi 64.5 21 0.00046 36.5 6.9 63 538-608 15-78 (240)
136 COG4651 RosB Kef-type K+ trans 62.2 2.3E+02 0.0049 30.5 15.2 60 51-121 244-303 (408)
137 COG0679 Predicted permeases [G 61.6 1.6E+02 0.0034 31.9 13.8 107 283-392 10-118 (311)
138 cd01992 PP-ATPase N-terminal d 61.0 44 0.00095 32.8 8.7 36 625-660 1-36 (185)
139 TIGR00946 2a69 he Auxin Efflux 60.1 2.5E+02 0.0055 30.3 29.4 135 283-425 182-319 (321)
140 TIGR00930 2a30 K-Cl cotranspor 58.4 4.9E+02 0.011 33.1 43.7 133 448-611 573-710 (953)
141 PRK10711 hypothetical protein; 58.3 2.3E+02 0.005 29.3 15.5 83 339-425 87-169 (231)
142 PF01171 ATP_bind_3: PP-loop f 58.0 26 0.00057 34.6 6.4 57 625-695 1-57 (182)
143 PRK12563 sulfate adenylyltrans 57.2 24 0.00052 38.1 6.3 37 625-661 39-75 (312)
144 cd01984 AANH_like Adenine nucl 57.1 11 0.00025 31.8 3.2 33 626-659 1-33 (86)
145 PF01012 ETF: Electron transfe 57.0 27 0.00059 33.8 6.3 80 634-733 15-100 (164)
146 PF04172 LrgB: LrgB-like famil 56.5 2.3E+02 0.005 29.0 12.9 35 112-146 69-103 (215)
147 COG2086 FixA Electron transfer 54.9 40 0.00087 35.4 7.3 109 628-758 31-150 (260)
148 TIGR00783 ccs citrate carrier 54.7 1.3E+02 0.0029 33.0 11.4 92 46-147 194-292 (347)
149 COG2035 Predicted membrane pro 54.3 2.9E+02 0.0063 29.2 15.1 46 28-75 58-105 (276)
150 TIGR02039 CysD sulfate adenyly 53.9 36 0.00078 36.5 6.9 37 625-661 21-57 (294)
151 PRK05253 sulfate adenylyltrans 53.9 40 0.00086 36.4 7.4 38 624-661 28-65 (301)
152 PRK15475 oxaloacetate decarbox 52.0 16 0.00035 39.7 3.9 133 312-457 131-270 (433)
153 PRK04288 antiholin-like protei 51.8 2.9E+02 0.0064 28.5 15.4 36 111-146 84-119 (232)
154 COG5505 Predicted integral mem 51.7 3.4E+02 0.0073 29.2 27.6 82 315-400 276-357 (384)
155 COG3969 Predicted phosphoadeno 51.4 33 0.00071 37.0 6.0 57 623-695 27-84 (407)
156 TIGR02185 Trep_Strep conserved 51.1 2.7E+02 0.0057 27.8 14.7 25 343-367 161-185 (189)
157 TIGR00659 conserved hypothetic 50.8 3E+02 0.0065 28.4 14.2 36 111-146 78-113 (226)
158 PRK15476 oxaloacetate decarbox 50.6 18 0.00038 39.4 3.9 133 312-457 131-270 (433)
159 PRK15477 oxaloacetate decarbox 50.6 18 0.00038 39.4 3.9 133 312-457 131-270 (433)
160 PRK04125 murein hydrolase regu 50.2 1.8E+02 0.0039 27.6 10.1 34 317-351 68-103 (141)
161 TIGR00659 conserved hypothetic 48.8 3.2E+02 0.007 28.1 16.8 83 339-425 86-168 (226)
162 PRK04125 murein hydrolase regu 48.6 2.4E+02 0.0052 26.7 10.7 103 30-142 7-113 (141)
163 cd01993 Alpha_ANH_like_II This 48.2 89 0.0019 30.5 8.5 37 625-661 1-39 (185)
164 PRK06806 fructose-bisphosphate 46.8 1.1E+02 0.0023 32.8 9.2 111 535-654 16-131 (281)
165 KOG1650 Predicted K+/H+-antipo 46.0 2.4E+02 0.0052 34.8 13.1 66 97-170 313-378 (769)
166 PF13593 DUF4137: SBF-like CPA 45.9 2.7E+02 0.0058 30.2 12.3 92 284-378 6-98 (313)
167 PF03652 UPF0081: Uncharacteri 45.3 78 0.0017 29.7 7.0 60 549-611 37-97 (135)
168 PF04172 LrgB: LrgB-like famil 45.2 3.6E+02 0.0077 27.6 14.7 83 339-425 76-158 (215)
169 TIGR01109 Na_pump_decarbB sodi 45.1 4.4E+02 0.0095 28.7 18.7 75 262-339 194-268 (354)
170 PF03547 Mem_trans: Membrane t 43.7 4.9E+02 0.011 28.8 21.9 87 283-370 244-335 (385)
171 COG0679 Predicted permeases [G 43.1 4.6E+02 0.01 28.3 31.2 138 282-425 167-306 (311)
172 PF05684 DUF819: Protein of un 42.5 2.2E+02 0.0049 31.8 11.3 94 311-409 54-151 (378)
173 PF03812 KdgT: 2-keto-3-deoxyg 42.5 1.1E+02 0.0024 32.9 8.3 72 60-144 176-247 (314)
174 PF09605 Trep_Strep: Hypotheti 41.7 3.6E+02 0.0079 26.7 14.8 128 234-366 37-181 (186)
175 PRK06801 hypothetical protein; 39.8 2.8E+02 0.006 29.7 11.0 111 535-654 16-131 (286)
176 TIGR00793 kdgT 2-keto-3-deoxyg 39.7 2E+02 0.0044 30.8 9.6 73 60-145 176-248 (314)
177 PF13194 DUF4010: Domain of un 38.9 4.4E+02 0.0095 26.8 15.2 47 159-208 26-72 (211)
178 PF03977 OAD_beta: Na+-transpo 38.7 5.6E+02 0.012 28.0 23.8 253 35-340 4-269 (360)
179 TIGR01109 Na_pump_decarbB sodi 38.1 24 0.00052 37.9 2.5 114 311-432 59-180 (354)
180 KOG0573 Asparagine synthase [A 37.3 2.4E+02 0.0053 31.8 10.0 98 588-706 225-325 (520)
181 PRK10711 hypothetical protein; 37.1 4.9E+02 0.011 26.9 14.0 36 111-146 79-114 (231)
182 PF04018 DUF368: Domain of unk 35.0 5.6E+02 0.012 27.0 16.0 43 25-69 54-96 (257)
183 TIGR00840 b_cpa1 sodium/hydrog 34.8 2.7E+02 0.006 32.9 10.9 73 35-111 239-311 (559)
184 PF06826 Asp-Al_Ex: Predicted 32.1 4.9E+02 0.011 25.4 11.1 89 280-371 21-115 (169)
185 cd01713 PAPS_reductase This do 31.1 85 0.0018 29.8 5.2 35 625-660 1-35 (173)
186 PRK10660 tilS tRNA(Ile)-lysidi 31.1 2.7E+02 0.0058 31.8 9.8 58 624-695 16-74 (436)
187 PRK01658 holin-like protein; V 30.8 4.3E+02 0.0093 24.4 10.0 30 317-347 65-96 (122)
188 TIGR02057 PAPS_reductase phosp 29.5 3.2E+02 0.0069 28.1 9.2 34 624-660 26-59 (226)
189 PRK01821 hypothetical protein; 29.5 4.8E+02 0.01 24.5 10.4 29 318-347 71-101 (133)
190 PRK12737 gatY tagatose-bisphos 28.9 1.8E+02 0.004 31.0 7.5 70 535-611 16-85 (284)
191 PRK12857 fructose-1,6-bisphosp 28.7 1.9E+02 0.004 31.0 7.4 69 536-611 17-85 (284)
192 PRK01658 holin-like protein; V 28.3 4.8E+02 0.01 24.1 10.8 98 30-141 4-109 (122)
193 PRK10696 tRNA 2-thiocytidine b 28.3 3.5E+02 0.0075 28.3 9.5 37 624-660 30-68 (258)
194 COG1902 NemA NADH:flavin oxido 27.9 4E+02 0.0086 29.6 10.1 127 578-733 192-321 (363)
195 PF03686 UPF0146: Uncharacteri 27.9 1.1E+02 0.0023 28.5 4.7 35 540-574 72-106 (127)
196 PRK00109 Holliday junction res 27.6 1.6E+02 0.0034 27.8 6.0 58 551-611 42-99 (138)
197 COG3371 Predicted membrane pro 27.2 6E+02 0.013 25.1 9.9 89 22-126 46-135 (181)
198 PF01889 DUF63: Membrane prote 27.2 7.8E+02 0.017 26.2 17.6 44 165-208 151-196 (273)
199 PF01032 FecCD: FecCD transpor 26.6 7.5E+02 0.016 26.8 11.9 62 45-107 33-94 (311)
200 PF03390 2HCT: 2-hydroxycarbox 26.5 9.7E+02 0.021 27.1 16.4 47 327-375 109-155 (414)
201 TIGR01858 tag_bisphos_ald clas 26.2 2.2E+02 0.0048 30.4 7.5 69 536-611 15-83 (282)
202 PF01507 PAPS_reduct: Phosphoa 25.9 1.2E+02 0.0026 29.0 5.2 26 625-650 1-26 (174)
203 cd01118 ArsB_permease Anion pe 25.9 9.6E+02 0.021 26.8 22.3 24 45-68 10-33 (416)
204 PRK15052 D-tagatose-1,6-bispho 25.3 4.2E+02 0.0092 29.8 9.5 107 541-661 15-125 (421)
205 TIGR02359 thiW thiW protein. L 25.2 6.4E+02 0.014 24.5 10.4 15 57-71 34-48 (160)
206 cd04740 DHOD_1B_like Dihydroor 25.0 8.5E+02 0.018 25.8 12.7 173 553-755 105-291 (296)
207 TIGR01520 FruBisAldo_II_A fruc 25.0 2.5E+02 0.0054 31.0 7.7 88 522-612 13-111 (357)
208 KOG2718 Na+-bile acid cotransp 25.0 3.4E+02 0.0074 30.1 8.8 32 98-129 117-148 (371)
209 PRK01821 hypothetical protein; 24.7 5.9E+02 0.013 23.9 10.6 94 30-139 9-112 (133)
210 PRK04148 hypothetical protein; 24.4 1.1E+02 0.0024 28.7 4.3 34 541-574 80-113 (134)
211 PRK05812 secD preprotein trans 24.2 1.1E+03 0.023 27.5 13.2 23 125-147 359-381 (498)
212 PF06181 DUF989: Protein of un 24.2 9E+02 0.02 25.9 13.8 39 315-354 230-268 (300)
213 COG0037 MesJ tRNA(Ile)-lysidin 23.7 1.8E+02 0.0039 30.9 6.5 56 624-695 22-77 (298)
214 PRK14853 nhaA pH-dependent sod 23.3 6.3E+02 0.014 28.7 10.6 26 306-331 59-84 (423)
215 PRK01663 C4-dicarboxylate tran 23.2 1.1E+03 0.025 26.7 14.2 36 112-147 66-101 (428)
216 PRK08185 hypothetical protein; 22.7 3E+02 0.0065 29.4 7.7 110 536-655 12-126 (283)
217 PRK09535 btuC corrinoid ABC tr 22.4 1.1E+03 0.024 26.2 15.8 24 49-72 90-113 (366)
218 PRK09195 gatY tagatose-bisphos 21.9 2.9E+02 0.0062 29.6 7.4 69 536-611 17-85 (284)
219 cd04734 OYE_like_3_FMN Old yel 21.7 1.1E+03 0.023 25.9 12.9 131 579-733 185-318 (343)
220 PF02568 ThiI: Thiamine biosyn 21.6 3.8E+02 0.0082 27.0 7.8 35 624-662 4-38 (197)
221 TIGR02230 ATPase_gene1 F0F1-AT 21.6 2.6E+02 0.0057 24.8 5.8 38 130-167 51-88 (100)
222 COG3748 Predicted membrane pro 21.4 7.9E+02 0.017 26.7 10.1 54 299-354 212-265 (407)
223 KOG3180 Electron transfer flav 21.1 3.8E+02 0.0082 26.9 7.2 92 634-746 40-144 (254)
224 PF03613 EIID-AGA: PTS system 21.1 1.5E+02 0.0032 31.4 5.0 20 277-296 58-77 (264)
225 PRK12738 kbaY tagatose-bisphos 20.9 3.3E+02 0.0073 29.1 7.6 69 536-611 17-85 (286)
226 TIGR02810 agaZ_gatZ D-tagatose 20.9 6.2E+02 0.014 28.5 9.7 107 541-661 14-124 (420)
227 cd00946 FBP_aldolase_IIA Class 20.8 3.8E+02 0.0082 29.5 8.1 75 536-612 15-99 (345)
228 COG1883 OadB Na+-transporting 20.8 24 0.00051 37.1 -1.0 130 314-457 83-214 (375)
229 PRK09196 fructose-1,6-bisphosp 20.7 3.1E+02 0.0068 30.2 7.4 70 535-611 16-86 (347)
230 cd00947 TBP_aldolase_IIB Tagat 20.7 3.3E+02 0.0071 29.0 7.5 69 536-611 12-80 (276)
231 cd01994 Alpha_ANH_like_IV This 20.5 1.5E+02 0.0032 29.7 4.6 21 625-645 1-21 (194)
232 KOG1307 K+-dependent Ca2+/Na+ 20.2 5.2E+02 0.011 29.5 8.8 53 157-212 458-518 (588)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=3.2e-151 Score=1349.82 Aligned_cols=783 Identities=52% Similarity=0.927 Sum_probs=701.3
Q ss_pred CCCCCCccCCCCcccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCCcccccccccC
Q 003702 6 ACPAPMKATSNGVFQGDNPLDYALPLAILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFP 85 (801)
Q Consensus 6 ~c~~~~~~~s~g~~~~~~~l~~~l~~~l~~i~lil~~~~~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp 85 (801)
+|+.+.+.+|+|+|+|+||++|++|++++|+++++++++++++++||+|||+++|||++|+++||+++|++..+.+.+||
T Consensus 18 ~c~~~~~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp 97 (832)
T PLN03159 18 VCYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFP 97 (832)
T ss_pred ccccCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCC
Confidence 49865578999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHH
Q 003702 86 SRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVA 165 (801)
Q Consensus 86 ~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ 165 (801)
.++.+.+++++++|++++||++|+|+|++.+||++|+++.+|+.++++|+++|+.+++++.. ...........+++|++
T Consensus 98 ~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~-~~~~~~~~~~~l~~g~a 176 (832)
T PLN03159 98 LRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQ-VSRNVHQGTFILFLGVA 176 (832)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccchhHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999988877743 21112223467899999
Q ss_pred HhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003702 166 FSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVTPIF 245 (801)
Q Consensus 166 ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 245 (801)
+|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++..+...+......+|.++..+++++++.+++||++
T Consensus 177 lS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~~ 256 (832)
T PLN03159 177 LSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGI 256 (832)
T ss_pred HHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877655443334456777777788888889999999
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 003702 246 KWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSS 325 (801)
Q Consensus 246 ~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~ 325 (801)
.|+.++++++++.++.++.+++++++++++++|.+|+|+++|||++|+++|+ +++++.+.+|++++++++|+|+||+++
T Consensus 257 ~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPlFFv~v 335 (832)
T PLN03159 257 WWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPLFFAIS 335 (832)
T ss_pred HHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988888999999999999999999999999999999999999995 789999999999999999999999999
Q ss_pred cccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCChhHHH
Q 003702 326 GLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFA 405 (801)
Q Consensus 326 G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~ 405 (801)
|+++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++||+||++++++++++++.|+++++.|+
T Consensus 336 Gl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~ 415 (832)
T PLN03159 336 GLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFA 415 (832)
T ss_pred hheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhh
Confidence 99999988865445666667778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHcccccccchhhhccccccCCCCCCCceEEEEeccCCChhHHHHHHHHhcCCCCCCCcEEE
Q 003702 406 IMVLMAVFTTFITTPLVMAVYKPNQKTSKVAYKHRTIKRKDPNSELRIFACFHTASNVPTMINLIEASRGTEKKEGLCVY 485 (801)
Q Consensus 406 ~~v~~~lv~t~i~~pl~~~l~~~~~~~~~~~~~~r~i~~~~~~~elrILv~v~~~~~~~~li~Ll~~~~~~~~~~p~~v~ 485 (801)
+++++++++|.+++|++.++|+|+||+. .||+|++|+.++++|+|||+|+|+++++++++||+|+++++ +++|++||
T Consensus 416 ~lVl~avl~T~i~~Plv~~ly~p~rk~~--~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t-~~sp~~vy 492 (832)
T PLN03159 416 VMVLVAVAMTALITPVVTVVYRPARRLV--GYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPT-KRSPICIY 492 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhc--cccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCC-CCCCceEE
Confidence 9999999999999999999999999999 99999999999999999999999999999999999999999 89999999
Q ss_pred EEEeeeccCCchhhHHHhhhccCCCCccCCCCCCccchHHHHHHHHhhc-cceEEEEeEEecCCCChHHHHHHHHHhcCc
Q 003702 486 AMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFEAFRQL-SRVFIRPMTAISAMHGMHEDICSSAERKRA 564 (801)
Q Consensus 486 ~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~-~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a 564 (801)
++||+|+++|++|++++|+.+++..+..++ .+.++|+++++|++|+++ ++++++++|++||+++||+|||+.|+|+++
T Consensus 493 ~lhLveL~~r~~~~l~~h~~~~~~~~~~~~-~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~ 571 (832)
T PLN03159 493 VLHLVELTGRASAMLIVHNTRKSGRPALNR-TQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRV 571 (832)
T ss_pred EEEEEeecCCCccceeeeeccccccccccc-ccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCC
Confidence 999999999999999999876544332221 135589999999999976 589999999999999999999999999999
Q ss_pred cEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEEecCCCCCCCccccCCcceEEEEeccCCcChHHHHHHHH
Q 003702 565 AMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDRGLGGSTHVAASNVSSVITVLFFGGNDDQEALAYGA 644 (801)
Q Consensus 565 ~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgilvdrg~~~~~~~~~~~~~~~i~v~f~Gg~ddreaL~~a~ 644 (801)
|+||+||||+|+.||++++.+..+|.+|++||++||||||||||||.++..+.......+||+++|+|||||||||+||+
T Consensus 572 slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~ 651 (832)
T PLN03159 572 SLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAW 651 (832)
T ss_pred CEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCcchHHHHHHHH
Confidence 99999999999999999988999999999999999999999999997643333344567899999999999999999999
Q ss_pred HHhhCCCeEEEEEEeccCCCCccccc-----------ccCCCCCCcccccHHHHHHHHHhhccCCCceEEEEEEecChhH
Q 003702 645 RMAEHPGISLNVVRFLPSSEISGEIE-----------ADTNDAESTGESADEIFLAEVKQKFKNLEAFKYEERWIKNTSE 713 (801)
Q Consensus 645 rma~~~~v~ltvv~~v~~~~~~~~~~-----------~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~~~~e 713 (801)
|||+||++++||+||++.++.....+ ....+++++|+++||++++|||.++.++++|.|+||+|+|++|
T Consensus 652 rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~~e 731 (832)
T PLN03159 652 RMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEE 731 (832)
T ss_pred HHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCHHH
Confidence 99999999999999997543221000 0011224568889999999999999888899999999999999
Q ss_pred HHHHHhcccC-CcEEEEccCC--CchhhcccccCCCCCcccccccccccCCCCcceeEEEEEeccCCCCCCCCCCCcccc
Q 003702 714 TVDVLGEFNK-CHLFLVGRMP--VSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVVQQYVGQTPSSPLLPDKVAV 790 (801)
Q Consensus 714 ~~~~l~~~~~-~DLvivGr~~--~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvqq~~~~~~~~~~~~~~~~~ 790 (801)
|+.++|++++ |||+||||+| +|++++||+||+||||||+|||+|||+||.+++||||||||...++ +| ++.-.
T Consensus 732 ~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~~~~~-~~---~~~~~ 807 (832)
T PLN03159 732 TVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYVGTGP-QP---DDLGT 807 (832)
T ss_pred HHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeeccCCC-Cc---ccCCC
Confidence 9999999998 9999999998 5999999999999999999999999999999999999999995422 22 33444
Q ss_pred cCCCCCcC
Q 003702 791 IESPEHDT 798 (801)
Q Consensus 791 ~~~~~~~~ 798 (801)
++.|+|+.
T Consensus 808 ~~~~~~~~ 815 (832)
T PLN03159 808 PESPAHSP 815 (832)
T ss_pred CCCCCCch
Confidence 45555543
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-122 Score=1084.05 Aligned_cols=753 Identities=51% Similarity=0.819 Sum_probs=684.7
Q ss_pred CCccCCCCcccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcH
Q 003702 10 PMKATSNGVFQGDNPLDYALPLAILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSL 89 (801)
Q Consensus 10 ~~~~~s~g~~~~~~~l~~~l~~~l~~i~lil~~~~~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~ 89 (801)
+++.++.|.|.|+||++|++|++++|+.+++++++++++++||+|||++++++++||++||+.+|++..+.+.+||.++.
T Consensus 2 ~~~~~~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~ 81 (769)
T KOG1650|consen 2 WVKATSNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSM 81 (769)
T ss_pred CCccccCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CC---chhHHHHHHHH
Q 003702 90 TVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKG-VD---QAPFLIFMGVA 165 (801)
Q Consensus 90 ~~l~~l~~~gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~-~~---~~~~~l~lg~~ 165 (801)
..+++++.+|+.+++|+.|+|+|.+.++|++|++..+|+.++++|++.|+.+...+....... +. ...+..++..+
T Consensus 82 ~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (769)
T KOG1650|consen 82 IVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSA 161 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988887775433211 11 11256788899
Q ss_pred HhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHHHHHHHHHHHH
Q 003702 166 FSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGR-SPLVSLWVLLCGCGFVIGCVFIVTPI 244 (801)
Q Consensus 166 ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~ 244 (801)
+|.|+||+++++|.|+|++++++||+++++++++|+.+|.++.+..++..... ++....|.+...+++.+++.++++|.
T Consensus 162 ~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~ 241 (769)
T KOG1650|consen 162 QSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPL 241 (769)
T ss_pred hhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhh
Confidence 99999999999999999999999999999999999999999888887766543 34556888888888999999999999
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 003702 245 FKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIG-IHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFV 323 (801)
Q Consensus 245 ~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g-~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~ 323 (801)
+.|+.+|+|++++.++.+...++..++.++.+++.++ +|+++|||+.|+++|+++|+++.+.+|+|++.+++|+|+||+
T Consensus 242 ~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~ 321 (769)
T KOG1650|consen 242 MKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFA 321 (769)
T ss_pred HHHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred HhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCChhH
Q 003702 324 SSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQT 403 (801)
Q Consensus 324 ~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~ 403 (801)
..|+++|+..+.. |......+...+++|++++..++.++|+|+||++.+|++|++||.+++++++.+.+.++++++.
T Consensus 322 ~~G~k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~ 398 (769)
T KOG1650|consen 322 ISGLKTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEG 398 (769)
T ss_pred hhccceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccch
Confidence 9999999998874 7777788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHcccccccchhhhccccccCCCCCCCceEEEEeccCCChhHHHHHHHHhcCCCCCCCcE
Q 003702 404 FAIMVLMAVFTTFITTPLVMAVYKPNQKTSKVAYKHRTIKRKDPNSELRIFACFHTASNVPTMINLIEASRGTEKKEGLC 483 (801)
Q Consensus 404 ~~~~v~~~lv~t~i~~pl~~~l~~~~~~~~~~~~~~r~i~~~~~~~elrILv~v~~~~~~~~li~Ll~~~~~~~~~~p~~ 483 (801)
|++++++++++|.+++|++..+|+|.+++. .|++|++|+.++++|+|++.|+|++++++++++++|+++++ +++|+.
T Consensus 399 f~~~vl~alv~t~I~~~~l~~~y~p~~~~~--~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~-~~~p~~ 475 (769)
T KOG1650|consen 399 FTVMVLMALVSTFITPPLLMFLYDPTRKYH--GYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGS-LESPLS 475 (769)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhcchhhhcC--ceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCC-CCCCcc
Confidence 999999999999999999999999999999 89999999999999999999999999999999999999998 667999
Q ss_pred EEEEEeeeccCCchhhHHHhhhccCCCCccCCCCCCccchHHHHHHHHhhc--cceEEEEeEEecCCCChHHHHHHHHHh
Q 003702 484 VYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFEAFRQL--SRVFIRPMTAISAMHGMHEDICSSAER 561 (801)
Q Consensus 484 v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~--~~v~v~~~~~vs~~~~m~~~I~~~A~~ 561 (801)
+|++|++|+.+|+.|++++|+.++++.... ....++++..+|+.|++. ..+.++++|++||+++||||||.+|.+
T Consensus 476 v~~lhlveL~~~~~~~li~h~~~~~~~~~~---~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~ 552 (769)
T KOG1650|consen 476 VYALHLVELVGRATPLLISHKLRKNGRVES---RSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALD 552 (769)
T ss_pred eeeeeeeecccccchhhhhhhhcccccccc---ccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHh
Confidence 999999999999999999999877642211 124467999999999984 679999999999999999999999999
Q ss_pred cCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEEecCCCCCCCccccCCcceEEEEeccCCcChHHHHH
Q 003702 562 KRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDRGLGGSTHVAASNVSSVITVLFFGGNDDQEALA 641 (801)
Q Consensus 562 ~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgilvdrg~~~~~~~~~~~~~~~i~v~f~Gg~ddreaL~ 641 (801)
+++++|++||||+|+.++..++.+..+|.+|++|+++|||||||++|||.......+.....++|++.|+||+||||||+
T Consensus 553 ~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~~~~~~~~~~~~~v~~lF~GG~DDrEALa 632 (769)
T KOG1650|consen 553 KGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRRSGVTQKRGSSYKVVVLFLGGKDDREALA 632 (769)
T ss_pred hCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCcccccceecccceeEEEEEecCChhhHHHHH
Confidence 99999999999999966689999999999999999999999999999983211111223367899999999999999999
Q ss_pred HHHHHhhCCCeEEEEEEeccCCCCcccccccCCCCCCcccccHHHHHHHH-HhhccCCCceEEE-EEEecChhHHHHHHh
Q 003702 642 YGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEV-KQKFKNLEAFKYE-ERWIKNTSETVDVLG 719 (801)
Q Consensus 642 ~a~rma~~~~v~ltvv~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~-~~~~~~~~~v~~~-e~~v~~~~e~~~~l~ 719 (801)
++.||++||++++||+||++.++... .....++++.+|++..+++ +.....+.++.|. ||.+.++.||.++++
T Consensus 633 ~~~rm~~~~~v~lTVirf~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~~~ 707 (769)
T KOG1650|consen 633 LAKRMAENPRVTLTVIRFFPDESKYN-----RKVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTALLR 707 (769)
T ss_pred HHHHHhhCCceEEEEEEeeccchhhc-----ccccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHHHH
Confidence 99999999999999999998654320 1113578888899888888 6555556678888 699999999999999
Q ss_pred cccC-CcEEEEccCC--CchhhcccccCCCCCcccccccccccCCCCcceeEEEEEeccC
Q 003702 720 EFNK-CHLFLVGRMP--VSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVVQQYVG 776 (801)
Q Consensus 720 ~~~~-~DLvivGr~~--~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvqq~~~ 776 (801)
++.+ |||++|||++ +++.++|+++|+||||||+|||.|+|+||.+++||||+|||.+
T Consensus 708 ~~~~~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~~ 767 (769)
T KOG1650|consen 708 SITEDYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQLY 767 (769)
T ss_pred HhccccceEEEecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeeec
Confidence 9998 9999999998 8999999999999999999999999999999999999999975
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=2.3e-46 Score=437.43 Aligned_cols=410 Identities=19% Similarity=0.313 Sum_probs=327.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003702 31 LAILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLE 110 (801)
Q Consensus 31 ~~l~~i~lil~~~~~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle 110 (801)
.++.++.+++.++.++..++||+|+|+++||+++|+++||+++|++. ..+.++.++++|++++||.+|+|
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~----------~~~~i~~laelGvv~LlF~iGLE 74 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT----------DVESILHFAEFGVVLMLFVIGLE 74 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC----------CHHHHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999999999999764 34568899999999999999999
Q ss_pred cChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhccHHHHHHHHHhcCccCChhHH
Q 003702 111 MDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDVGR 190 (801)
Q Consensus 111 ~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~ 190 (801)
+|++.+|+.+|+++.++..++++++++++.++++++.. +..++++|.+++.||++++.++|+|+|+++++.||
T Consensus 75 l~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~-------~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~ 147 (621)
T PRK03562 75 LDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGLR-------WQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGR 147 (621)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Confidence 99999999999999999999999998887776665432 25789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC-chhHHH-HHHHHHH----HHHHHHHHHHHHHHHHHhhcCCCCCcchHHHH
Q 003702 191 MAMSAAAVNDVAAWILLALAVALSGSGRS-PLVSLW-VLLCGCG----FVIGCVFIVTPIFKWMEKRCPDGEPVKELYVC 264 (801)
Q Consensus 191 l~ls~a~i~D~~~i~ll~~~~~~~~~~~~-~~~~~~-~~~~~~~----~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~ 264 (801)
.+++.++++|+.+|++++++..+...+.+ .....| ..+..++ ++++..++.+|+++|+.++. .+|.+..
T Consensus 148 ~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~-----~~e~~~~ 222 (621)
T PRK03562 148 SAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSG-----LREVFTA 222 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CchHHHH
Confidence 99999999999999999887665443211 112222 2222222 22223345566666655432 4678888
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHH
Q 003702 265 VTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLV 344 (801)
Q Consensus 265 ~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~ 344 (801)
.+++++++++++++.+|+|+++|||++|++++ +.++++++.++++++. ++|+|+||+.+|+++|+..+.. .|+.++
T Consensus 223 ~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~-~~~~~~~le~~i~pf~-~lll~lFFi~vG~~id~~~l~~--~~~~il 298 (621)
T PRK03562 223 VALFLVFGFGLLMEEVGLSMALGAFLAGVLLA-SSEYRHALESDIEPFK-GLLLGLFFIAVGMSIDFGTLLE--NPLRIL 298 (621)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHhc-CCccHHHHHHHHHHHH-HHHHHHHHHHhhhhccHHHHHH--HHHHHH
Confidence 89999999999999999999999999999999 4789999999999995 9999999999999999987763 333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCChhHHHHHHHHHHHHHHhHHHHHHH
Q 003702 345 LVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPLVMA 424 (801)
Q Consensus 345 ~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~pl~~~ 424 (801)
.++++.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++ +.|++.+|++..
T Consensus 299 ~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v-~lS~~~tP~l~~ 377 (621)
T PRK03562 299 ILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAV-ALSMAATPLLLV 377 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 5566789999999999999999999999999999999999999999999999999999999998765 456666777666
Q ss_pred HcccccccchhhhccccccCCCCCCCceEEEEeccCCChhHHHHHHH
Q 003702 425 VYKPNQKTSKVAYKHRTIKRKDPNSELRIFACFHTASNVPTMINLIE 471 (801)
Q Consensus 425 l~~~~~~~~~~~~~~r~i~~~~~~~elrILv~v~~~~~~~~li~Ll~ 471 (801)
++++..... ..+...++..++.+-|+++|-++.- ...+.+.++
T Consensus 378 ~~~~~~~~~---~~~~~~~~~~~~~~~~vII~G~Gr~-G~~va~~L~ 420 (621)
T PRK03562 378 LLDRLEQSR---TEEAREADEIDEQQPRVIIAGFGRF-GQIVGRLLL 420 (621)
T ss_pred hhhHHHHHH---hhhcccccccccccCcEEEEecChH-HHHHHHHHH
Confidence 665432111 1111101111223568998877654 334444443
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=6.2e-46 Score=432.74 Aligned_cols=375 Identities=20% Similarity=0.280 Sum_probs=316.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhcc
Q 003702 32 AILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEM 111 (801)
Q Consensus 32 ~l~~i~lil~~~~~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~ 111 (801)
++..+.++++++.+++.++||+|+|++++||++|+++||+++|... ..+.++.++++|++++||.+|+|+
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~ 76 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHF 76 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcC
Confidence 3556788899999999999999999999999999999999998753 235688999999999999999999
Q ss_pred ChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHH
Q 003702 112 DPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDVGRM 191 (801)
Q Consensus 112 d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l 191 (801)
|++.+|+.++.....+..++++|+++++++.+.+... +..++++|+++|.||++++.++++|+|+++++.||+
T Consensus 77 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~ 149 (558)
T PRK10669 77 SLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGWS-------LMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQI 149 (558)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHH
Confidence 9999999988877778888888988888776665422 267889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---CCCch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHH
Q 003702 192 AMSAAAVNDVAAWILLALAVALSGS---GRSPL-----VSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPVKELYV 263 (801)
Q Consensus 192 ~ls~a~i~D~~~i~ll~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~ 263 (801)
++++++++|+.+|+++.+...+... +.... ...+.++..+++++++.++.|+...|+.++.++.+ .+|.+.
T Consensus 150 ~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~ 228 (558)
T PRK10669 150 AIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFT 228 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHH
Confidence 9999999999999988876654321 11111 12344455666777778889999999999886654 578888
Q ss_pred HHHHHHHHHHHHH-HHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHH
Q 003702 264 CVTLSIVLLSGFV-TDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGF 342 (801)
Q Consensus 264 ~~~l~~~l~~~~~-ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~ 342 (801)
..++++++++++. ++.+|+|+++|||++|+++|+ .+.++++.+...++ .++|+|+||+++|+++|+..+.+ .+..
T Consensus 229 l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~-~~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~--~~~~ 304 (558)
T PRK10669 229 LSVLALALGIAFGAVELFDVSFALGAFFAGMVLNE-SELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQ--QPLA 304 (558)
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhC-ChhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHH--HHHH
Confidence 8888888888864 699999999999999999994 67888888777776 48899999999999999987764 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCChhHHHHHHHHHHHHHHhHHHHH
Q 003702 343 LVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPLV 422 (801)
Q Consensus 343 ~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~pl~ 422 (801)
.+.++++.+++|++++++.++++|+++|+++.+|++|++||+++++++..+.+.|+++++.|+.++++++++++++|.+.
T Consensus 305 ~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~ 384 (558)
T PRK10669 305 VLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLF 384 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778899999999999999999999999999999999999999999999999999999999998888877777777
Q ss_pred HHHccc
Q 003702 423 MAVYKP 428 (801)
Q Consensus 423 ~~l~~~ 428 (801)
++..+.
T Consensus 385 ~~~~~~ 390 (558)
T PRK10669 385 TLLERY 390 (558)
T ss_pred HHhhHH
Confidence 765443
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=3.9e-45 Score=426.67 Aligned_cols=411 Identities=18% Similarity=0.338 Sum_probs=324.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003702 31 LAILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLE 110 (801)
Q Consensus 31 ~~l~~i~lil~~~~~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle 110 (801)
.++.++.+++.++.+...+++|+|+|+++||+++|+++||+++|.+. ..+.+..++++|++++||.+|+|
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~----------~~~~i~~laelGvv~LLF~iGLe 74 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS----------DVDEILHFSELGVVFLMFIIGLE 74 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC----------cHHHHHHHHHHHHHHHHHHHHhc
Confidence 35778899999999999999999999999999999999999999764 23457899999999999999999
Q ss_pred cChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhccHHHHHHHHHhcCccCChhHH
Q 003702 111 MDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDVGR 190 (801)
Q Consensus 111 ~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~ 190 (801)
+|++.+|+.+|+++.++..++++|+++++.+.++++. + +..++++|++++.||++++.++|+|+|+++++.||
T Consensus 75 l~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~----~---~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~ 147 (601)
T PRK03659 75 LNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDF----S---WQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQ 147 (601)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----C---HHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHH
Confidence 9999999999999999999999998777665554432 2 26788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 003702 191 MAMSAAAVNDVAAWILLALAVALSGSGRSPLVS---LWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPVKELYVCVTL 267 (801)
Q Consensus 191 l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l 267 (801)
++++..+++|+.++++++++..+.......... .+.++..++++++..++.+|+++|+.+. +.+|.++..++
T Consensus 148 ~~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l 222 (601)
T PRK03659 148 LGFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAAL 222 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHH
Confidence 999999999999999998776655432221111 1111122222222334555656555433 25688999999
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHH
Q 003702 268 SIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVI 347 (801)
Q Consensus 268 ~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i 347 (801)
+++++++++++.+|+|+++|||++|+++++ .++++++.++++++. ++|+|+||+.+|+++|+..+.+ .|..++.++
T Consensus 223 ~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~-s~~~~~l~~~i~pf~-~lll~lFFi~vGm~id~~~l~~--~~~~il~~~ 298 (601)
T PRK03659 223 LLVLGSALFMDALGLSMALGTFIAGVLLAE-SEYRHELEIAIEPFK-GLLLGLFFISVGMALNLGVLYT--HLLWVLISV 298 (601)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHhcC-CchHHHHHHHHHHHH-HHHHHHHHHHHhhhccHHHHHH--hHHHHHHHH
Confidence 999999999999999999999999999995 789999999999995 9999999999999999988764 344555666
Q ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCChhHHHHHHHHHHHHHHhHHHHHHHHcc
Q 003702 348 VTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPLVMAVYK 427 (801)
Q Consensus 348 ~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~pl~~~l~~ 427 (801)
++.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++++ |++.+|++..+++
T Consensus 299 ~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~l-s~~~tP~l~~~~~ 377 (601)
T PRK03659 299 VVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTL-SMMTTPLLMKLID 377 (601)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHhH
Confidence 778899999999999999999999999999999999999999999999999999999999666655 5566777776665
Q ss_pred c--ccccchhhhccccccCCCCCCCceEEEEeccCCChhHHHHHHH
Q 003702 428 P--NQKTSKVAYKHRTIKRKDPNSELRIFACFHTASNVPTMINLIE 471 (801)
Q Consensus 428 ~--~~~~~~~~~~~r~i~~~~~~~elrILv~v~~~~~~~~li~Ll~ 471 (801)
+ .+++.. ..+.+. .+...+.+.++++|-++.- ...+.+.++
T Consensus 378 ~~~~~~~~~-~~~~~~-~~~~~~~~~~vII~G~Gr~-G~~va~~L~ 420 (601)
T PRK03659 378 KWLARRLNG-PEEEDE-KPWVEDDKPQVIIVGFGRF-GQVIGRLLM 420 (601)
T ss_pred HHHHHhhcc-cccccc-ccccccccCCEEEecCchH-HHHHHHHHH
Confidence 5 232220 001001 0111123568888876554 334444444
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-44 Score=395.95 Aligned_cols=378 Identities=27% Similarity=0.503 Sum_probs=319.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003702 31 LAILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLE 110 (801)
Q Consensus 31 ~~l~~i~lil~~~~~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle 110 (801)
..+.|+.++++++.+.+.++||+|+|+++||+++|+++||.+++.. .+..+.++.++++|++++||.+|+|
T Consensus 6 ~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~---------~~~~~~i~~laelGvi~LlF~~GLE 76 (397)
T COG0475 6 LILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLI---------IESSEIIELLAELGVVFLLFLIGLE 76 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCccccccc---------CCchHHHHHHHHHhHHHHHHHHHHC
Confidence 5788999999999999999999999999999999999999554433 3467889999999999999999999
Q ss_pred cChhHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHH-HHhhhcCCCCchhHHHHHHHHHhhccHHHHHHHHHhcCccCChh
Q 003702 111 MDPKSIRRAGKK-ALSIALGGISLPFALGIGTSFA-LRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDV 188 (801)
Q Consensus 111 ~d~~~l~~~~~~-~~~ia~~~~~ip~~~~~~~~~~-l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~ 188 (801)
+|++.+||++|+ ....+..++.+|+.++....+. ++. + +..++++|.+++.||.++++++++|+|..+++.
T Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~----~---~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~ 149 (397)
T COG0475 77 FDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGL----S---LIAALFLGAALALSSTAIVLKILMELGLLKTRE 149 (397)
T ss_pred cCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhcc----C---hHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 999999999999 8888888888888887644443 222 1 256999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 003702 189 GRMAMSAAAVNDVAAWILLALAVALSGSGRSPLV-SLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPVKELYVCVTL 267 (801)
Q Consensus 189 g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l 267 (801)
|++++++++++|+.++++++++..+..++..... .+...+...++.++..+..+++.+|+.|+..+. +.+|.....++
T Consensus 150 g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~l 228 (397)
T COG0475 150 GQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFVL 228 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHH
Confidence 9999999999999999999999888766543322 233444555555555555667777777765432 36789999999
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCch-HHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHH
Q 003702 268 SIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFA-GALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLV 346 (801)
Q Consensus 268 ~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~-~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~ 346 (801)
++++.+++++|.+|+|+++|||++|+++++ .+.+ ++++++++++.+++|+|+||+.+|+++|+..+.+ .+..+..+
T Consensus 229 ~i~l~~a~l~e~~gls~ilGAFlaGl~ls~-~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~--~~~~~l~~ 305 (397)
T COG0475 229 LLVLGAAYLAELLGLSMILGAFLAGLLLSE-SEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE--NLLLILLL 305 (397)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHhcc-cccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc--cHHHHHHH
Confidence 999999999999999999999999999994 5566 7999999999977999999999999999999885 34446677
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCChhHHHHHHHHHHHHHHhHHHHHHHHc
Q 003702 347 IVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPLVMAVY 426 (801)
Q Consensus 347 i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~pl~~~l~ 426 (801)
+.+..++|++++++.++..|+++|+++..|+.+.++|+++++.++.+.+ +.++++.+...+..++++|.+.+.+.+.++
T Consensus 306 ~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~ 384 (397)
T COG0475 306 VALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILL 384 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999998876 578888888887777777777776666665
Q ss_pred ccc
Q 003702 427 KPN 429 (801)
Q Consensus 427 ~~~ 429 (801)
++.
T Consensus 385 ~~~ 387 (397)
T COG0475 385 KRL 387 (397)
T ss_pred HHh
Confidence 543
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1.4e-39 Score=379.16 Aligned_cols=379 Identities=18% Similarity=0.172 Sum_probs=312.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhh
Q 003702 30 PLAILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGL 109 (801)
Q Consensus 30 ~~~l~~i~lil~~~~~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gl 109 (801)
..++++++++++++.+++.+++|+++|.+++++++|+++||+++|.+. .++.+..+.++++|+++++|..|+
T Consensus 5 ~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~--------~~~~~~~~~i~~l~L~~iLF~~Gl 76 (562)
T PRK05326 5 NSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQ--------FDNYPLAYLVGNLALAVILFDGGL 76 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcc--------cCcHHHHHHHHHHHHHHHHHcCcc
Confidence 367889999999999999999999999999999999999999998653 124567899999999999999999
Q ss_pred ccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCchhHHHHHHHHHhhccHHHHHHHHHhcCc-cCCh
Q 003702 110 EMDPKSIRRAGKKALSIALGGISLPFALGIGTS-FALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKL-LTTD 187 (801)
Q Consensus 110 e~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~-~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l-l~s~ 187 (801)
|+|++.+|+++++++.++..++++|++++.... +++.. .+..++++|+++++||++++.++++|.|+ ++++
T Consensus 77 ~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~-------~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~ 149 (562)
T PRK05326 77 RTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGL-------DWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKER 149 (562)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CHHHHHHHhhhhccCchHHHHHHHhccCCCcchh
Confidence 999999999999999999999999987754444 33322 23678999999999999999999999995 7999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 003702 188 VGRMAMSAAAVNDVAAWILLALAVALSGSGRS--PLVSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPVKELYVCV 265 (801)
Q Consensus 188 ~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~ 265 (801)
++++++++|.+||.++++++.+...+..++.. .+..++.++..+++.++++++.++.+.|+.+|.... .++.+..+
T Consensus 150 v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~--~~~~~~i~ 227 (562)
T PRK05326 150 VASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALP--AEGLYPIL 227 (562)
T ss_pred HHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhHHHHH
Confidence 99999999999999999988877766544332 122234455566667777888899999999887421 34578888
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHH
Q 003702 266 TLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVL 345 (801)
Q Consensus 266 ~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~ 345 (801)
++++++++++++|.+|.|+++|+|++|+++++.++..+...+++++...+++.|+||+++|+.+|++.+.+ ..+..+++
T Consensus 228 ~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~-~~~~~l~i 306 (562)
T PRK05326 228 VLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLD-IALPALLL 306 (562)
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 99999999999999999999999999999998665555556667666678999999999999999987764 23333333
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCCh-hHHHHHHHHHHHHHHhHHHHHHH
Q 003702 346 VIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLND-QTFAIMVLMAVFTTFITTPLVMA 424 (801)
Q Consensus 346 ~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~-~~~~~~v~~~lv~t~i~~pl~~~ 424 (801)
.+++.+++|++++++.++.+++++||+..+|| .++||+++++++..+...++.+. ..|.++.+++++++.+.++.+..
T Consensus 307 ~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~-~g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~ 385 (562)
T PRK05326 307 ALFLILVARPLAVFLSLLPFRFNLREKLFISW-VGLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPW 385 (562)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCHhhhheeee-ecchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHH
Confidence 44567889999999999999999999999999 48999999999999998898864 55677767777777776666666
Q ss_pred Hcc
Q 003702 425 VYK 427 (801)
Q Consensus 425 l~~ 427 (801)
+.+
T Consensus 386 ~a~ 388 (562)
T PRK05326 386 AAR 388 (562)
T ss_pred HHH
Confidence 554
No 8
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=1.6e-34 Score=307.56 Aligned_cols=270 Identities=25% Similarity=0.430 Sum_probs=230.3
Q ss_pred HHHHHHHHHHcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhhh
Q 003702 41 LLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAG 120 (801)
Q Consensus 41 ~~~~~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l~~~~ 120 (801)
+++.+.+.++||+|+|++++++++|+++||+++|.++ ..+.++.++++|+++++|.+|+|+|++.+||++
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~----------~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~ 71 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS----------NVEGVNHLAEFGVILLMFLIGLELDLERLWKLR 71 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC----------ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4677889999999999999999999999999988754 235789999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHH
Q 003702 121 KKALSIALGGISLP-FALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDVGRMAMSAAAVN 199 (801)
Q Consensus 121 ~~~~~ia~~~~~ip-~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~ 199 (801)
|++..++..++++| +.+++.+.+++... +..++++|++++.||++++.++++|+|+.+++.|+++++++++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~ 144 (273)
T TIGR00932 72 KAAFGVGVLQVLVPGVLLGLLLGHLLGLA-------LGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQ 144 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHH
Confidence 99999999999999 66676666655422 26789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHH
Q 003702 200 DVAAWILLALAVALSGSGRSPL-VSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTD 278 (801)
Q Consensus 200 D~~~i~ll~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae 278 (801)
|+++++++.+......++..+. ...+.+...++..++.+++.++...|+.++.++.+ ..|.+...++.+++.+++++|
T Consensus 145 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~la~ 223 (273)
T TIGR00932 145 DIAVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELR-PSELFTAGSLLLMFGSAYFAD 223 (273)
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHH
Confidence 9999999988877654322221 22333444444555666778888899988876544 357888899999999999999
Q ss_pred HhchhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 003702 279 SIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTN 330 (801)
Q Consensus 279 ~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~id 330 (801)
.+|.|+++|||++|+++++ .+.++++.++++++. ++|+|+||+++|+++|
T Consensus 224 ~~g~s~~lgaf~aGl~~~~-~~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 224 LLGLSMALGAFLAGVVLSE-SEYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HhCCcHHHHHHHHHHHHcC-CchHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 9999999999999999996 456788999999999 9999999999999987
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=3.4e-39 Score=360.45 Aligned_cols=373 Identities=31% Similarity=0.545 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHH
Q 003702 38 LVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIR 117 (801)
Q Consensus 38 lil~~~~~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l~ 117 (801)
++++.+.+.+.++||+++|.+++|+++|+++||.+++..++ + ....+.++++|+.+++|.+|+|+|.+.+|
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~-------~--~~~~~~l~~i~l~~llF~~G~~~d~~~l~ 73 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEP-------D--NPSFELLAEIGLAFLLFEAGLELDIKELR 73 (380)
T ss_dssp ------------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccc-------h--hhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 34455666676899999999999999999999998875331 1 35688999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCchhHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHH
Q 003702 118 RAGKKALSIALGGISLPFAL-GIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDVGRMAMSAA 196 (801)
Q Consensus 118 ~~~~~~~~ia~~~~~ip~~~-~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a 196 (801)
|++|+.+.+++.++++|+++ ++.+.+++. .. +++ +..++++|.+++.||++++.++++|.+..+++.++++++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~-~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~ 149 (380)
T PF00999_consen 74 RNWRRALALGLVGFLLPFILVGFLLSFFLF-IL--GLS-WAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSES 149 (380)
T ss_dssp --------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTT
T ss_pred cccccccccccceeeehhhHHHHHHHHhhc-cc--hhh-hHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhc
Confidence 99999999999999999888 766664321 11 222 26789999999999999999999888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCcchHHHHHHHHHHHHHHH
Q 003702 197 AVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDG-EPVKELYVCVTLSIVLLSGF 275 (801)
Q Consensus 197 ~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~-~~~~e~~~~~~l~~~l~~~~ 275 (801)
++||+++++++.+.......+. ....+.....+...+....+.+....|+.++..+. ++.++.+..++++.++.+++
T Consensus 150 ~i~d~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (380)
T PF00999_consen 150 VINDIIAIILLSILISLAQASG--QSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYG 227 (380)
T ss_dssp TTTTTTTTTTT---------------------------------------------------------------------
T ss_pred hhhccchhhhhhhhhhhhcccc--cccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhcc
Confidence 9999999999988777652111 11222222222223333333444444444443222 24678889999999999999
Q ss_pred HHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-hhhhHHHHHHHHHHHHHHH
Q 003702 276 VTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQ-GLQSWGFLVLVIVTACFGK 354 (801)
Q Consensus 276 ~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~-~~~~~~~~~~~i~~~~~~K 354 (801)
++|.+|.|+++|+|++|++++ +.+.++++.++++++.++++.|+||+++|+++|++.+. +...|.....+++..+++|
T Consensus 228 ~a~~~g~s~~l~af~~Gl~~~-~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k 306 (380)
T PF00999_consen 228 LAEILGLSGILGAFIAGLILS-NSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGK 306 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccceeeeeehccc-cccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhh
Confidence 999999999999999999999 67778889999999998999999999999999988874 2245555666667777999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCChhHHHHHHHHHHHHHHhHHHHHHHHc
Q 003702 355 IVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPLVMAVY 426 (801)
Q Consensus 355 ~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~pl~~~l~ 426 (801)
++++++.+++.|.++||+..+|+.+++||+++++++..+.+.|.++++.+++++.++++++.+.++.++.+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~ 378 (380)
T PF00999_consen 307 FIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL 378 (380)
T ss_dssp ----------------HHHHTTTTSS--HHHHHHHHHHHHH-------------------------------
T ss_pred hceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998888888887777776654
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-33 Score=282.34 Aligned_cols=380 Identities=26% Similarity=0.356 Sum_probs=306.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHH
Q 003702 28 ALPLAILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLV 107 (801)
Q Consensus 28 ~l~~~l~~i~lil~~~~~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~ 107 (801)
+.|+ +-.+..-+..+++++.+..|+|+|+.+||+++|++.||...|... .......++++|++++||-+
T Consensus 4 ~tpl-i~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFva----------d~~La~~LAelGViLLmFgv 72 (408)
T COG4651 4 DTPL-ITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVA----------DQTLAPELAELGVILLMFGV 72 (408)
T ss_pred CchH-HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCccc----------chhHHHHHHHhhHHHHHHhc
Confidence 3444 344555677889999999999999999999999999998777543 34456689999999999999
Q ss_pred hhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhccHHHHHHHHHhcCccCCh
Q 003702 108 GLEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTD 187 (801)
Q Consensus 108 Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~ 187 (801)
|++...+++.....-++--++.++.+-...+..+.+.+++.+ ...+.+|.++|..|..++.|-++|+++.+++
T Consensus 73 GLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~lgws~-------~~glvfGlaLS~aSTVvllraLqEr~lidt~ 145 (408)
T COG4651 73 GLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWSF-------GTGIVFGLALSVASTVVLLRALEERQLIDTQ 145 (408)
T ss_pred chheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCc-------ccceeeeehhhhHHHHHHHHHHHHhcccccc
Confidence 999999999876655554555566555566666666655432 3467899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---C-Cch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 003702 188 VGRMAMSAAAVNDVAAWILLALAVALSGSG---R-SPL----VSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPVK 259 (801)
Q Consensus 188 ~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~---~-~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~ 259 (801)
.||++++--+++|+..++.+....+++..- . ... ...+...+...|..++.++.|++..|+..+..... .+
T Consensus 146 rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tG-sr 224 (408)
T COG4651 146 RGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATG-SR 224 (408)
T ss_pred CceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cH
Confidence 999999999999999998888776654321 1 111 12234557788999999999999999998874322 57
Q ss_pred hHHHHHHHHHHHHHHH-HHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhh
Q 003702 260 ELYVCVTLSIVLLSGF-VTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQ 338 (801)
Q Consensus 260 e~~~~~~l~~~l~~~~-~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~ 338 (801)
|.+...++.++++.++ .++.+|+|+.+|||++|+++. +++.+++..+..-++. +.|.-+||+.+||..|+..+.+ +
T Consensus 225 Elf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~-eselshraa~~slpLr-daFaVlFFvsVGmlf~P~~l~~-~ 301 (408)
T COG4651 225 ELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLA-ESELSHRAAEDSLPLR-DAFAVLFFVSVGMLFDPMILIQ-Q 301 (408)
T ss_pred HHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhc-chhhhHHHHHhccCHH-HHHHHHHHHHhhhhcCcHHhhc-c
Confidence 8999999999998887 567899999999999999999 6888888888888875 8888999999999999877764 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCChhHHHHHHHHHHHHHHhH
Q 003702 339 SWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFIT 418 (801)
Q Consensus 339 ~~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~~v~~~lv~t~i~ 418 (801)
.+. ++..+.+.+.+|-+..+...+.++.|.|.++.++..+.+.|+++++++..+.+.+++++ .-.-++++..+.+++.
T Consensus 302 pl~-vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~-~gr~LvlagailsIl~ 379 (408)
T COG4651 302 PLA-VLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPE-AGRDLVLAGAILSILL 379 (408)
T ss_pred hHH-HHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcH-HHHHHHHHHHHHHHHH
Confidence 443 44556677889999999999999999999999999999999999999999999999984 4455556677778888
Q ss_pred HHHHHHHcccccc
Q 003702 419 TPLVMAVYKPNQK 431 (801)
Q Consensus 419 ~pl~~~l~~~~~~ 431 (801)
.|+.....++.++
T Consensus 380 nPllf~~~dr~~~ 392 (408)
T COG4651 380 NPLLFALLDRYQR 392 (408)
T ss_pred hHHHHHHHHHHhh
Confidence 9988776554333
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.97 E-value=4.9e-28 Score=278.35 Aligned_cols=368 Identities=15% Similarity=0.197 Sum_probs=266.6
Q ss_pred cccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHc-ccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHH
Q 003702 18 VFQGDNPLDYALPLAILQICLVVLLTRLLAFVLR-PLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLA 96 (801)
Q Consensus 18 ~~~~~~~l~~~l~~~l~~i~lil~~~~~~~~ll~-~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~ 96 (801)
.|+..++-+.++.++++ +..+++..++..+++ |+.+|..+.++++|+++||.+++...+.- + .......++ ++
T Consensus 2 ~w~~l~~~~~~l~~~~l--G~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~-~--g~~d~i~le-It 75 (810)
T TIGR00844 2 IWEQLEVTKAHVAYSCV--GIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS-W--GNTDSITLE-IS 75 (810)
T ss_pred CcccccccchhhHHHHH--HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh-c--ccchHHHHH-HH
Confidence 36655666555544433 444444445555555 99999999999999999999988655310 0 000223344 99
Q ss_pred HHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhccHHHHHH
Q 003702 97 NLGLLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLAR 176 (801)
Q Consensus 97 ~~gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~ 176 (801)
++++.+.+|..|++++.+.+++.|+..+.+++.++.++++++.++++++...+ .+..++++|+++++|+|+.+..
T Consensus 76 eIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL-----~~~~ALLLGAILAPTDPVLAss 150 (810)
T TIGR00844 76 RILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGL-----NFPASLLMGACITATDPVLAQS 150 (810)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHHhhhcCCcHHHHHH
Confidence 99999999999999999999999999999999999999888777777663222 2378999999999999887777
Q ss_pred HHH---hcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCchh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003702 177 ILA---ELKLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSG--RSPLV---SLWVLLCGCGFVIGCVFIVTPIFKWM 248 (801)
Q Consensus 177 iL~---el~ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~i 248 (801)
+++ ..+ ++.++..++.++|.+||.++++++.+.+.+.... ..... ....++..++++++++++++.+..|+
T Consensus 151 V~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~L 229 (810)
T TIGR00844 151 VVSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKA 229 (810)
T ss_pred HHhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776 234 6889999999999999999998887665544311 11111 12233334444555555555555555
Q ss_pred HhhcCCCC-CcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHH-HHHHHHHHHHHHHHHHHHHHhc
Q 003702 249 EKRCPDGE-PVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGA-LVEKVEDLVSGLLLPLYFVSSG 326 (801)
Q Consensus 249 ~~~~~~~~-~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~-l~~kl~~~~~~~~~plfF~~~G 326 (801)
.++..+.. ...+.++.+.++++++++.+++.+|.++++++|++|+++.+....... -...++.....++..++|+++|
T Consensus 230 l~~l~rr~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLG 309 (810)
T TIGR00844 230 IRFAEGKNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLG 309 (810)
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 54432111 134567778888888899999999999999999999999975433322 2334667777888999999999
Q ss_pred ccccccccch----hhhHHHHHHHHHHHHHHHHHHHHHHHHHc--CCChHHHHHHHHHHhhhhHHHHHHHHhhcccCc
Q 003702 327 LKTNITTIQG----LQSWGFLVLVIVTACFGKIVGTVAMSLAC--RIPFKEALALGFLMNTKGLVELIVLNIGKDRKV 398 (801)
Q Consensus 327 ~~idl~~l~~----~~~~~~~~~~i~~~~~~K~i~~~l~~~~~--~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~ 398 (801)
+.+....+.. ...|..+++.+++.++.|+.++++.+.+. ..+|+|++++|| .++||..++.++.++.+.+.
T Consensus 310 a~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 310 SILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 9998766642 13455566666777888988888764443 478999999999 89999999999988877654
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.97 E-value=6.1e-28 Score=277.59 Aligned_cols=368 Identities=14% Similarity=0.128 Sum_probs=259.4
Q ss_pred HHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhHH
Q 003702 37 CLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSI 116 (801)
Q Consensus 37 ~lil~~~~~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l 116 (801)
..+++++.....+++|+++|.+++++++|+++||..++... +. +. +.+..+++.+++|..|+++|.+.+
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~-------~~-~~---~~~~~~~Lp~lLF~~g~~~~~~~l 72 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEV-------PL-DR---EIVLFLFLPPLLFEAAMNTDLREL 72 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCC-------CC-CH---HHHHHHHHHHHHHHHHhcCCHHHH
Confidence 44555666778899999999999999999999986443210 11 11 234558999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHH
Q 003702 117 RRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDVGRMAMSAA 196 (801)
Q Consensus 117 ~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a 196 (801)
|++++.+..+++.++++|++++....+++.. + .+..++++|+++|+||++++.+++++.+ +++++.+++.++|
T Consensus 73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~~~-l-----~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gES 145 (525)
T TIGR00831 73 RENFRPIALIAFLLVVVTTVVVGFSLNWILG-I-----PLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGES 145 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c-----cHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhh
Confidence 9999999999999999998776555554321 1 2378999999999999999999999988 6999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHH
Q 003702 197 AVNDVAAWILLALAVALSGS-GRSP-LVSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPVKELYVCVTLSIVLLSG 274 (801)
Q Consensus 197 ~i~D~~~i~ll~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~ 274 (801)
++||..+++++.+...+..+ +... ....+.++..++.++++++++..+..|+.++..+ .+.....++++++++++
T Consensus 146 llND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~---~~~~~~~l~l~~~~~~y 222 (525)
T TIGR00831 146 LLNDGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKID---DPLVEIALTILAPFAGF 222 (525)
T ss_pred hhcchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHH
Confidence 99999999999988876653 2111 2223333344444555566666666666655332 23456788899999999
Q ss_pred HHHHHhchhHHHHHHHHHhhccCCCCc------hHHHHHHHHHHHHHHHHHHHHHHhccccccccc--ch-hh-h-----
Q 003702 275 FVTDSIGIHALFGAFITGVLVPKEGPF------AGALVEKVEDLVSGLLLPLYFVSSGLKTNITTI--QG-LQ-S----- 339 (801)
Q Consensus 275 ~~ae~~g~~~~lgaf~aGl~l~~~~~~------~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l--~~-~~-~----- 339 (801)
+++|.+|.|+++++|++|+++++..+. .+.-.+.++.....++.+++|+++|++++.... .. .. .
T Consensus 223 ~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~ 302 (525)
T TIGR00831 223 LLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVI 302 (525)
T ss_pred HHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 999999999999999999999874332 123345677777899999999999999874211 10 00 0
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHH--HH-----cCCChHHHHHHHHHHhhhhHHHHHHHHhhcc---cC-------cC
Q 003702 340 WGF---LVLVIVTACFGKIVGTVAMS--LA-----CRIPFKEALALGFLMNTKGLVELIVLNIGKD---RK-------VL 399 (801)
Q Consensus 340 ~~~---~~~~i~~~~~~K~i~~~l~~--~~-----~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~---~~-------~i 399 (801)
+.. .+++.......|++.++... ++ .+++||+.+.++| .+.||.++++++..... .| .+
T Consensus 303 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i 381 (525)
T TIGR00831 303 LALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYEL 381 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHH
Confidence 100 11222233445654433321 11 2478999999999 79999999988753321 11 12
Q ss_pred ChhHHHHHHHHHHHHHHhHHHHHHHHc
Q 003702 400 NDQTFAIMVLMAVFTTFITTPLVMAVY 426 (801)
Q Consensus 400 ~~~~~~~~v~~~lv~t~i~~pl~~~l~ 426 (801)
-.-++.+++++.++.+...+|+++++-
T Consensus 382 ~~~~~~vVl~TllvqG~tlp~l~r~l~ 408 (525)
T TIGR00831 382 VFLAAGVILFSLLVQGISLPIFVKRKF 408 (525)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhcC
Confidence 223355566666666666677776653
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.4e-25 Score=247.87 Aligned_cols=381 Identities=17% Similarity=0.196 Sum_probs=289.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003702 31 LAILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLE 110 (801)
Q Consensus 31 ~~l~~i~lil~~~~~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle 110 (801)
..++++.+++.+......+.+|+..|.+..+++.|++.||.+++...+ +....-+.+..+++..++|..|+|
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~--------~~~~~~el~~~l~l~ilLf~~g~~ 77 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISP--------DLELDPELFLVLFLAILLFAGGLE 77 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccc--------cccCChHHHHHHHHHHHHHHhHhc
Confidence 457888889999999999999999999999999999999988877552 111122344489999999999999
Q ss_pred cChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhccHHHHHHHHHhcCccCChhHH
Q 003702 111 MDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDVGR 190 (801)
Q Consensus 111 ~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~ 190 (801)
+|.+.+||+++....+++.+++++.+......+++.+ ++ .+..++.+|+++|+||+.++.+++++.+ .+.++.+
T Consensus 78 l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~----~i-~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~ 151 (429)
T COG0025 78 LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP----GI-PLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRT 151 (429)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC----Ch-hHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHH
Confidence 9999999999999999999999997665555555532 22 2368999999999999999999999977 7999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCcchHHHHHHH
Q 003702 191 MAMSAAAVNDVAAWILLALAVALSGSGRSP--LVSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDG-EPVKELYVCVTL 267 (801)
Q Consensus 191 l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~-~~~~e~~~~~~l 267 (801)
++.++|++||..+++++.+...+..+++.. ......++..+..++.++++++.+..|+.++..+. .........+.+
T Consensus 152 iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L 231 (429)
T COG0025 152 ILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTL 231 (429)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH
Confidence 999999999999999999888877643221 22223333333344444444444444544443221 112457788999
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHhhcc-----CCCCch-HHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHH
Q 003702 268 SIVLLSGFVTDSIGIHALFGAFITGVLVP-----KEGPFA-GALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWG 341 (801)
Q Consensus 268 ~~~l~~~~~ae~~g~~~~lgaf~aGl~l~-----~~~~~~-~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~ 341 (801)
..++..+.++|.+|.|++++++++|+... +..+.. +...+.++.....++.-+.|++.|++++...+.. ..+.
T Consensus 232 ~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~-~~~~ 310 (429)
T COG0025 232 LLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLA-LGLL 310 (429)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-hhHH
Confidence 99999999999999999999999998773 122222 4455567777778999999999999999887764 3355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC------CChHHHHHHHHHHhhhhHHHHHHHHhhccc------CcCChhHHHHHHH
Q 003702 342 FLVLVIVTACFGKIVGTVAMSLACR------IPFKEALALGFLMNTKGLVELIVLNIGKDR------KVLNDQTFAIMVL 409 (801)
Q Consensus 342 ~~~~~i~~~~~~K~i~~~l~~~~~~------~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~------~~i~~~~~~~~v~ 409 (801)
..++.++..+++|++++++..+..+ .+++|+++++| -++||.++++++...... ..+-.-.+.+++.
T Consensus 311 ~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~ 389 (429)
T COG0025 311 GLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILF 389 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHH
Confidence 6677888889999999999998853 79999999999 699999999998655422 1222234555656
Q ss_pred HHHHHHHhHHHHHHHHcc
Q 003702 410 MAVFTTFITTPLVMAVYK 427 (801)
Q Consensus 410 ~~lv~t~i~~pl~~~l~~ 427 (801)
++++.+...+|+.++...
T Consensus 390 Sl~v~g~t~~~l~~~~~~ 407 (429)
T COG0025 390 SLLVQGLTLPPLAKKLEV 407 (429)
T ss_pred HHHHHhhhHHHHHHHhcc
Confidence 666666666777766543
No 14
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.94 E-value=4.1e-24 Score=245.59 Aligned_cols=376 Identities=13% Similarity=0.151 Sum_probs=264.0
Q ss_pred HHHHHHHHHHHHHH-ccc-CCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChh
Q 003702 37 CLVVLLTRLLAFVL-RPL-RQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPK 114 (801)
Q Consensus 37 ~lil~~~~~~~~ll-~~l-~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~ 114 (801)
.++..++.+...+. |+. ++|..+..++.|+++|+...+... .+. ..-.-+.+-.+.+..++|..|+++|.+
T Consensus 15 ~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~------~~~-~~l~~~lf~~~~LPpIlFe~g~~l~~~ 87 (559)
T TIGR00840 15 ILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH------IDP-PTLDSSYFFLYLLPPIVLDAGYFMPQR 87 (559)
T ss_pred HHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC------Ccc-CCcCHHHHHHHHHHHHHHHHHhcCCHH
Confidence 33333444444444 444 599999999999999975432211 000 001125666678889999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCCCchhHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHH
Q 003702 115 SIRRAGKKALSIALGGISLPFALGIGTSFALRATVS---KGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDVGRM 191 (801)
Q Consensus 115 ~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~---~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l 191 (801)
.++++.+.++.+|+.|++++.++.....+++..... .+. .+..++++|+++|+|||+++..++++.+ .+.++.++
T Consensus 88 ~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l-~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~l 165 (559)
T TIGR00840 88 NFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDI-GLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYII 165 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC-CHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhh
Confidence 999999999999999999997665544444322111 112 3478999999999999999999999999 79999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC--CCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 003702 192 AMSAAAVNDVAAWILLALAVALSGSG--RSPLV----SLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPVKELYVCV 265 (801)
Q Consensus 192 ~ls~a~i~D~~~i~ll~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~ 265 (801)
+.++|++||.++++++.++..+...+ ..... ....++...+.+++++++.+.+..++.++.... +.....+
T Consensus 166 l~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~---~~~e~~l 242 (559)
T TIGR00840 166 IFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHI---RQIEPLF 242 (559)
T ss_pred eehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHH
Confidence 99999999999999998887765421 11111 111222222235566666677777777776432 2456778
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHhhccCC-----CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhH
Q 003702 266 TLSIVLLSGFVTDSIGIHALFGAFITGVLVPKE-----GPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSW 340 (801)
Q Consensus 266 ~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~-----~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~ 340 (801)
++++++++++++|.+|.|++++++++|+++.+. .+..+.-.+.++...+.+...+.|+++|+.+.... . ...|
T Consensus 243 ~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~-~-~~~~ 320 (559)
T TIGR00840 243 VFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN-H-EWNW 320 (559)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-h-hHHH
Confidence 899999999999999999999999999999642 22233344567777778889999999999763221 1 1344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------cCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCCh-----hHHHHHHH
Q 003702 341 GFLVLVIVTACFGKIVGTVAMSLA------CRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLND-----QTFAIMVL 409 (801)
Q Consensus 341 ~~~~~~i~~~~~~K~i~~~l~~~~------~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~-----~~~~~~v~ 409 (801)
...++.+++++++|+++++..++. .+.+++|.+.++| .+.||.++++++....+.+.-.. .++.++++
T Consensus 321 ~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~ 399 (559)
T TIGR00840 321 AFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFF 399 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehH
Confidence 444555667778999999877654 3579999999999 79999999998865543322222 23444445
Q ss_pred HHHHHHHhHHHHHHHHcc
Q 003702 410 MAVFTTFITTPLVMAVYK 427 (801)
Q Consensus 410 ~~lv~t~i~~pl~~~l~~ 427 (801)
++++....++|+++++.-
T Consensus 400 TvlvqG~T~~pl~~~L~l 417 (559)
T TIGR00840 400 TVIFQGGTIKPLVEVLKV 417 (559)
T ss_pred HHHHHHhhHHHHHHHhCC
Confidence 666666667888888743
No 15
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.3e-23 Score=220.79 Aligned_cols=352 Identities=18% Similarity=0.156 Sum_probs=289.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhcc
Q 003702 32 AILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEM 111 (801)
Q Consensus 32 ~l~~i~lil~~~~~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~ 111 (801)
+++--.++++++.+.+.+..|+|.|..+-.+..|++.|--++|.+. .++......++++++++++|-.|+.+
T Consensus 8 ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~--------fdNy~~Ay~vg~lALaiILfdgG~~T 79 (574)
T COG3263 8 ILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIE--------FDNYPFAYMVGNLALAIILFDGGFGT 79 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccc--------cCccHHHHHHHHHHHHHHhhcCccCC
Confidence 3444446777888899999999999999999999999998888765 24566788999999999999999999
Q ss_pred ChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHH
Q 003702 112 DPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDVGRM 191 (801)
Q Consensus 112 d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l 191 (801)
.++.+|...++++.++..|++++-.+..+.++++... .|.+++++|+++..|+.+.+..+|.+.+ +|.+++.+
T Consensus 80 ~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l------~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~st 152 (574)
T COG3263 80 QLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNL------DWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVAST 152 (574)
T ss_pred cHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhhh
Confidence 9999999999999999999999976655555554332 2378999999999999999999999888 79999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 003702 192 AMSAAAVNDVAAWILLALAVALSGSGRSPL--VSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPVKELYVCVTLSI 269 (801)
Q Consensus 192 ~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~ 269 (801)
..-+|--||-+++++..-.+.+...+.++. ..+..++..++++++.++..+.+..|+++|+.- .+..|..++++.
T Consensus 153 LEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nL---d~GL~pil~la~ 229 (574)
T COG3263 153 LEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINL---DSGLYPILALAG 229 (574)
T ss_pred EEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcc---ccchhHHHHHHH
Confidence 999999999999888765665555443322 233345677788888899999999999999732 356888999999
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHH
Q 003702 270 VLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVT 349 (801)
Q Consensus 270 ~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~ 349 (801)
.++.+.+++.+|.|++++.+++|+++.|.+-..+.-..++.+=..++..-+.|...|+.+.++.+.. ...+.+++.+..
T Consensus 230 ~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~-iavPailL~l~m 308 (574)
T COG3263 230 GLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLP-IAIPAILLSLWM 308 (574)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhH-hhHHHHHHHHHH
Confidence 9999999999999999999999999997554444444444433358888888999999999988775 455656677788
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCChhH
Q 003702 350 ACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQT 403 (801)
Q Consensus 350 ~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~ 403 (801)
.+++|.+++|+...-+|++++|.++++| -+-||.++++++....-.|.-+.+.
T Consensus 309 ifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l 361 (574)
T COG3263 309 IFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARL 361 (574)
T ss_pred HHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceE
Confidence 8999999999999999999999999999 7999999999998777666555443
No 16
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.85 E-value=9.6e-20 Score=201.04 Aligned_cols=390 Identities=16% Similarity=0.141 Sum_probs=268.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccC---CChhHHHHHHHHhhCccccCCcccc-----cccccCCCcHHHHHHHHHHHHHH
Q 003702 31 LAILQICLVVLLTRLLAFVLRPLR---QPRVIAEIVGGILLGPSALGRNKDF-----LKAVFPSRSLTVLDTLANLGLLF 102 (801)
Q Consensus 31 ~~l~~i~lil~~~~~~~~ll~~l~---~P~ii~~ilaGiilGP~~lg~~~~~-----~~~lfp~~~~~~l~~l~~~gl~~ 102 (801)
.-++-++++++++.+...++++-| +|.-+.-++.|+++|-......... ....|.+ +.+-.+-+-.
T Consensus 35 ~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~------~~ff~vLLPp 108 (575)
T KOG1965|consen 35 VALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSP------DLFFLVLLPP 108 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecc------cHHHHHhhch
Confidence 345555677778889999999888 9999999999999994322111100 0011111 2333444556
Q ss_pred HHHHHhhccChhHHHhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhccHHHHHHHHHhc
Q 003702 103 FLFLVGLEMDPKSIRRAGKKALSIALGGISLPF-ALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAEL 181 (801)
Q Consensus 103 llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~-~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el 181 (801)
++|..|.+++.+.++|+......+++.|..++. ++|.++.++.......++. +..++++|+++|.|+|+.+.++++|+
T Consensus 109 iif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~-f~d~L~fGaliSATDPVtvLaIfnel 187 (575)
T KOG1965|consen 109 IIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLS-FKDCLAFGALISATDPVTVLAIFNEL 187 (575)
T ss_pred hhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhccccccccc-HHHHHHHhhHhcccCchHHHHHHHHh
Confidence 889999999999999999999999999988884 5565555543322233443 48999999999999999999999999
Q ss_pred CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 003702 182 KLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVS---LWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPV 258 (801)
Q Consensus 182 ~ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~ 258 (801)
+ ....+-.++.+++++||.++++++..+........+.+.. +..++........++...+.+-..+.|.+.-+ +.
T Consensus 188 ~-vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~-~~ 265 (575)
T KOG1965|consen 188 G-VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLR-RT 265 (575)
T ss_pred C-CCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 9 7889999999999999999999999888776554332222 11222222122222333333333333333222 23
Q ss_pred chHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCC-----CCchHHHHHHHHHHHHHHHHHHHHHHhccc-cccc
Q 003702 259 KELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKE-----GPFAGALVEKVEDLVSGLLLPLYFVSSGLK-TNIT 332 (801)
Q Consensus 259 ~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~-----~~~~~~l~~kl~~~~~~~~~plfF~~~G~~-idl~ 332 (801)
......+.+++.+..+++||.+|+++++..++.|+.+++. .+..+.-.+.+..+.+.+..-+-|+++|+. ++..
T Consensus 266 ~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~ 345 (575)
T KOG1965|consen 266 PSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQ 345 (575)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc
Confidence 5567888999999999999999999999999999999862 334455566667777777788889999963 3444
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC----------ChHHHHHHHHHHhhhhHHHHHHHHhhc-cc-----
Q 003702 333 TIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRI----------PFKEALALGFLMNTKGLVELIVLNIGK-DR----- 396 (801)
Q Consensus 333 ~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~~~----------~~~~~~~lgl~l~~kG~~~l~l~~~~~-~~----- 396 (801)
.... .....+....++.+++|.+-.+..+.+.+. +.++-..++|.-..||.++++++..-. +.
T Consensus 346 k~~~-~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~ 424 (575)
T KOG1965|consen 346 KHVY-KSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGG 424 (575)
T ss_pred ceee-echHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccccccc
Confidence 3331 112345566677888999888877776543 445566777765689999999874322 11
Q ss_pred CcCChhHHHHHHHHHHHHHHhHHHHHHHHccccc
Q 003702 397 KVLNDQTFAIMVLMAVFTTFITTPLVMAVYKPNQ 430 (801)
Q Consensus 397 ~~i~~~~~~~~v~~~lv~t~i~~pl~~~l~~~~~ 430 (801)
..+-..+..++++++++....+.|+++++-...+
T Consensus 425 q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~ 458 (575)
T KOG1965|consen 425 QTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVG 458 (575)
T ss_pred cEEEEeeeeeeeeeeeeeCCccHHHHHHhccccc
Confidence 3344445556667778888889999999854433
No 17
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1e-16 Score=163.42 Aligned_cols=345 Identities=17% Similarity=0.214 Sum_probs=245.3
Q ss_pred HHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhHH
Q 003702 37 CLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSI 116 (801)
Q Consensus 37 ~lil~~~~~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l 116 (801)
+.+.+++..--++-+++-+...+--.+.|+++||+++++..+..= .+.......++.+-+..-.|.++.|+..+.+
T Consensus 20 ~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~w----gn~d~it~ei~RvvLcvqvfava~eLPr~Y~ 95 (467)
T KOG4505|consen 20 GFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSW----GNKDYITYEISRVVLCVQVFAVAMELPRAYM 95 (467)
T ss_pred hHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccc----cCcchhhhhhhhhhHhHHHHHHHHhccHHHH
Confidence 445555555556666777777777789999999999887653110 1122345668888899999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhccHHHHHHHHHhc---CccCChhHHHHH
Q 003702 117 RRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAEL---KLLTTDVGRMAM 193 (801)
Q Consensus 117 ~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el---~ll~s~~g~l~l 193 (801)
.++++..+++-..-+++-.++.+.+.|.+.+. .++ ..++.+++..++|+|.....+..+- |..+.++..++.
T Consensus 96 l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~----lnf-~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~ 170 (467)
T KOG4505|consen 96 LEHWRSIFVLLLPVMIIGWLVSFGFVYALIPN----LNF-LTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLA 170 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----ccH-HHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHH
Confidence 99999888776655555555555555555432 222 6789999999999976666666543 345678888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC-----ch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 003702 194 SAAAVNDVAAWILLALAVALSGSGRS-----PL---VSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPVKELYVCV 265 (801)
Q Consensus 194 s~a~i~D~~~i~ll~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~ 265 (801)
+++-.||..++.++-+.+.+...+.. ++ ..++.....+.++.+++++.|..+++--++.-- ..|+++.+
T Consensus 171 AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrli---d~eSfl~~ 247 (467)
T KOG4505|consen 171 AESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLI---DRESFLIF 247 (467)
T ss_pred HhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHH
Confidence 99999999999999888776554321 11 122333334445556666666666655444322 36899999
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHH-HHHHHHHHHHHHHHHHHhcccccccccchh----hhH
Q 003702 266 TLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGALVE-KVEDLVSGLLLPLYFVSSGLKTNITTIQGL----QSW 340 (801)
Q Consensus 266 ~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~-kl~~~~~~~~~plfF~~~G~~idl~~l~~~----~~~ 340 (801)
-+++++.|+.+.+.+|.+-.+-.|.||..++.+..+.++..+ ++..+...++.-.||++.|..+|++.++.. ..|
T Consensus 248 ~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vw 327 (467)
T KOG4505|consen 248 YVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVW 327 (467)
T ss_pred HHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHH
Confidence 999999999999999999999999999999987777665544 567777677888899999999999887643 245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--CCChHHHHHHHHHHhhhhHHHHHHHHhhc
Q 003702 341 GFLVLVIVTACFGKIVGTVAMSLAC--RIPFKEALALGFLMNTKGLVELIVLNIGK 394 (801)
Q Consensus 341 ~~~~~~i~~~~~~K~i~~~l~~~~~--~~~~~~~~~lgl~l~~kG~~~l~l~~~~~ 394 (801)
-.+++-+.+.+.-|+.++++.-... =.+|||++++|. .+|.|.-++..+..+.
T Consensus 328 rlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 328 RLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred HHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence 4444444444444555554433222 138999999999 8999998887776554
No 18
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.77 E-value=7.5e-16 Score=168.11 Aligned_cols=300 Identities=18% Similarity=0.275 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHH-------HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHH
Q 003702 91 VLDTLANLGLLFFLFLVGLEMDPKSI-------RRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMG 163 (801)
Q Consensus 91 ~l~~l~~~gl~~llF~~Gle~d~~~l-------~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg 163 (801)
..+.+.+.-+.+|.|.+|+|+..+.+ ||..-+ ..-++.|+++|.++-+.+. ... ....-.+|
T Consensus 62 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPaliy~~~n----~~~------~~~~~GW~ 130 (423)
T PRK14853 62 LGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPALIYVAVN----LAG------GGALRGWA 130 (423)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHHHHHHHh----CCc------hhhhhhhh
Confidence 45566777788899999999955433 332222 3568889999986543322 110 01123344
Q ss_pred HHHhhccHHHHHHHHHhcCc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 003702 164 VAFSITAFPVLARILAELKL-LTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVT 242 (801)
Q Consensus 164 ~~ls~Ts~~vv~~iL~el~l-l~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 242 (801)
+- +.||.+.+..+|..+|- .++.++..+++.|++||+.+++++++.+ +++ ....+.......+ ++.
T Consensus 131 Ip-~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~~---i~~~~L~~a~~~~--~~l---- 197 (423)
T PRK14853 131 IP-TATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TSE---LNLEALLLALVPL--ALF---- 197 (423)
T ss_pred hh-hhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CCC---CCHHHHHHHHHHH--HHH----
Confidence 33 45888999999999874 4889999999999999999999988766 121 2222222222111 111
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC-----------CchHHHHHHHHH
Q 003702 243 PIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEG-----------PFAGALVEKVED 311 (801)
Q Consensus 243 ~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~-----------~~~~~l~~kl~~ 311 (801)
|+.++. ++++.+.++++. +++.+..+..|+|+.+|+|++|+++|..+ +..+++++++++
T Consensus 198 ----~~l~~~----~V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p 267 (423)
T PRK14853 198 ----WLLVQK----RVRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRP 267 (423)
T ss_pred ----HHHHHc----CCchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHH
Confidence 222232 134455555553 35566889999999999999999999411 336789999999
Q ss_pred HHHHHHHHHH-HHHhcccccc-cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCChHHHHHHHHHH
Q 003702 312 LVSGLLLPLY-FVSSGLKTNI-TTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLAC----------RIPFKEALALGFLM 379 (801)
Q Consensus 312 ~~~~~~~plf-F~~~G~~idl-~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~l 379 (801)
++..+++|+| |+..|.++|. ..+.+...-.....+++..+++|.+|.+..++.. +++|++-..+|++-
T Consensus 268 ~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L~ 347 (423)
T PRK14853 268 LSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALLA 347 (423)
T ss_pred HHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHH
Confidence 9999999999 9999999986 4342211112455677888999999988877753 46899999999854
Q ss_pred hhhhHHHHHHHHhhcc-cCcCChhHHHHHHHHHHHHHHhHHHHHHH
Q 003702 380 NTKGLVELIVLNIGKD-RKVLNDQTFAIMVLMAVFTTFITTPLVMA 424 (801)
Q Consensus 380 ~~kG~~~l~l~~~~~~-~~~i~~~~~~~~v~~~lv~t~i~~pl~~~ 424 (801)
+..=++++.+.+.+++ .....++.-..+.+.+++..++..-+++.
T Consensus 348 GIGFTmSlFI~~LAf~~~~~~~~~aKigil~~S~~s~~~G~~~l~~ 393 (423)
T PRK14853 348 GIGFTVSLLIGELAFGGGSARDDAVKVGVLTGSLIAALLASVLLRL 393 (423)
T ss_pred HHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444789999999984 22222233333334444444444434433
No 19
>PRK11175 universal stress protein UspE; Provisional
Probab=99.70 E-value=3e-16 Score=170.00 Aligned_cols=281 Identities=14% Similarity=0.119 Sum_probs=168.7
Q ss_pred eEEEEeccCCChhHHHHHHHHhcCCCCCCCcEEEEEEeeeccCCchhhHHHhhhccCCCCccCCCCCCccchHHHHHHHH
Q 003702 452 RIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFEAF 531 (801)
Q Consensus 452 rILv~v~~~~~~~~li~Ll~~~~~~~~~~p~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 531 (801)
|||+|++..+.....++.+..++. ....+++++|+++......+............ ....++..+.+++.
T Consensus 5 ~ILv~~D~s~~~~~al~~a~~lA~---~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~ 74 (305)
T PRK11175 5 NILVVIDPNQDDQPALRRAVYLAQ---RNGGKITAFLPIYDFSYEMTTLLSPDEREAMR-------QGVISQRTAWIREQ 74 (305)
T ss_pred eEEEEcCCCccccHHHHHHHHHHH---hcCCCEEEEEeccCchhhhhcccchhHHHHHH-------HHHHHHHHHHHHHH
Confidence 699999999998888887777763 24567999998863321111000000000000 00001111122222
Q ss_pred h---hccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEEec
Q 003702 532 R---QLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVD 608 (801)
Q Consensus 532 ~---~~~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgilvd 608 (801)
. ...+++++..... ..+.++.|++.|++.++||||+|+|++... .+..+|+..+++++++||||.++.+
T Consensus 75 ~~~~~~~~~~~~~~v~~--~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~------~~~~~gs~~~~l~~~~~~pvlvv~~ 146 (305)
T PRK11175 75 AKPYLDAGIPIEIKVVW--HNRPFEAIIQEVIAGGHDLVVKMTHQHDKL------ESVIFTPTDWHLLRKCPCPVLMVKD 146 (305)
T ss_pred HHHHhhcCCceEEEEec--CCCcHHHHHHHHHhcCCCEEEEeCCCCcHH------HhhccChhHHHHHhcCCCCEEEecc
Confidence 2 1235666654442 257899999999999999999999976432 2345788999999999999999743
Q ss_pred CCCCCCCccccCCcceEEEEeccCCcCh-------HHHHHHHHHHhhCC-CeEEEEEEeccCCCCcccccccCCCCCCcc
Q 003702 609 RGLGGSTHVAASNVSSVITVLFFGGNDD-------QEALAYGARMAEHP-GISLNVVRFLPSSEISGEIEADTNDAESTG 680 (801)
Q Consensus 609 rg~~~~~~~~~~~~~~~i~v~f~Gg~dd-------reaL~~a~rma~~~-~v~ltvv~~v~~~~~~~~~~~~~~~~~~~~ 680 (801)
+.. ...++|+++++|++.+ +.++++|.++|+.. +++++++++.+...............++.+
T Consensus 147 ~~~---------~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~ 217 (305)
T PRK11175 147 QDW---------PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYN 217 (305)
T ss_pred ccc---------CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHH
Confidence 211 1246999999998753 67999999999887 999999998753221100000000001111
Q ss_pred ccc---HHHHHHHHHhhccCCCceEEEEEEecChhHHHHHHhcccCCcEEEEccCCCchhhcccccCCCCCccccccccc
Q 003702 681 ESA---DEIFLAEVKQKFKNLEAFKYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLL 757 (801)
Q Consensus 681 ~~~---d~~~l~~~~~~~~~~~~v~~~e~~v~~~~e~~~~l~~~~~~DLvivGr~~~~~~~~gl~~w~e~~eLG~igd~l 757 (801)
+.. .++.++++.++... .........++..+.+....+..+.||+++|+++ .+|+.+| =+|...+-+
T Consensus 218 ~~~~~~~~~~l~~~~~~~~~--~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~----~~~~~~~----llGS~a~~v 287 (305)
T PRK11175 218 DAIRGQHLLAMKALRQKFGI--DEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVG----RTGLSAA----FLGNTAEHV 287 (305)
T ss_pred HHHHHHHHHHHHHHHHHhCC--ChhheeeccCCHHHHHHHHHHHhCCCEEEECCCc----cCCCcce----eecchHHHH
Confidence 111 12344555444321 1111222234555544333333349999999998 6677665 478888888
Q ss_pred ccCCCCcceeEEEEE
Q 003702 758 ISPDFSTSASVLVVQ 772 (801)
Q Consensus 758 as~d~~~~~SvLvvq 772 (801)
+.. ++.+||||.
T Consensus 288 ~~~---~~~pVLvv~ 299 (305)
T PRK11175 288 IDH---LNCDLLAIK 299 (305)
T ss_pred Hhc---CCCCEEEEc
Confidence 875 778999995
No 20
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.53 E-value=3e-12 Score=137.42 Aligned_cols=270 Identities=21% Similarity=0.330 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCchhHHHHHH
Q 003702 91 VLDTLANLGLLFFLFLVGLEMDPKSIR---RAGKKA---LSIALGGISLPFALGIGTSFALRAT-VSKGVDQAPFLIFMG 163 (801)
Q Consensus 91 ~l~~l~~~gl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~-~~~~~~~~~~~l~lg 163 (801)
..+.+.+.-+.+|.|.+|+|+..+.+. ++.||+ ..-++.|+++|.++-..+.. ... ...+| |
T Consensus 52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~~n~--~~~~~~~GW---------~ 120 (373)
T TIGR00773 52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAFNA--NDPITREGW---------A 120 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCcccCcc---------c
Confidence 455667777888999999999877664 333433 34577888888765332221 110 01122 2
Q ss_pred HHHhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 003702 164 VAFSITAFPVLARILAEL-KLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVT 242 (801)
Q Consensus 164 ~~ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 242 (801)
+-+ .||.+-...++.=+ +..+..+....++-+++||+.+++++++.+. + .....+.......+. +
T Consensus 121 IP~-ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt---~---~i~~~~L~~a~~~~~-~------ 186 (373)
T TIGR00773 121 IPA-ATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT---N---DLSMAALLVAAVAIA-V------ 186 (373)
T ss_pred ccc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC---C---CCCHHHHHHHHHHHH-H------
Confidence 211 24433333333323 2367788899999999999999988876552 2 222333333222111 1
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCc----hHHHHHHHHHHHHHHHH
Q 003702 243 PIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPF----AGALVEKVEDLVSGLLL 318 (801)
Q Consensus 243 ~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~----~~~l~~kl~~~~~~~~~ 318 (801)
.++.+|.. +++...+..+..++..+ + ...|+|+.+|+|++|+++|+..+. .+++++.+++.+..+++
T Consensus 187 ---l~~~~~~~----v~~~~~y~~lgvllW~~-~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lil 257 (373)
T TIGR00773 187 ---LAVLNRCG----VRRLGPYMLVGVILWFA-V-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLIL 257 (373)
T ss_pred ---HHHHHHcC----CchhhHHHHHHHHHHHH-H-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 12233321 23344444444333333 3 799999999999999999974333 35667777777989999
Q ss_pred HHH-HHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCChHHHHHHHHHHhhhhHHHH
Q 003702 319 PLY-FVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLAC----------RIPFKEALALGFLMNTKGLVEL 387 (801)
Q Consensus 319 plf-F~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~l~~kG~~~l 387 (801)
|+| |+..|.++|...+.. ...+....+++..+++|.+|++..++.. +++|++-.-+|++-+.-=++++
T Consensus 258 PlFAFanAGv~l~~~~~~~-~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSl 336 (373)
T TIGR00773 258 PLFAFANAGVSLQGVSLNG-LTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSI 336 (373)
T ss_pred HHHHHHhcCeeeecCcchh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999 999999998755433 2223466778889999999999888763 4689999999985444447899
Q ss_pred HHHHhhcc
Q 003702 388 IVLNIGKD 395 (801)
Q Consensus 388 ~l~~~~~~ 395 (801)
.+...+++
T Consensus 337 fI~~LAf~ 344 (373)
T TIGR00773 337 FIASLAFG 344 (373)
T ss_pred HHHHHhcC
Confidence 99888884
No 21
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.41 E-value=1.5e-13 Score=151.42 Aligned_cols=367 Identities=13% Similarity=0.163 Sum_probs=240.2
Q ss_pred HHHHHHHHcccC--CChhHHHHHHHHhhCccccCC--ccc-ccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHH
Q 003702 43 TRLLAFVLRPLR--QPRVIAEIVGGILLGPSALGR--NKD-FLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIR 117 (801)
Q Consensus 43 ~~~~~~ll~~l~--~P~ii~~ilaGiilGP~~lg~--~~~-~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l~ 117 (801)
+.+..-+.++++ .|.-...|+.|+++|-...+. ..+ +++ -+.+--.-+--++|-+|.-|.-+.+.
T Consensus 54 aKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~~~L~----------s~vFFlyLLPPIvlDAGYfMp~r~Ff 123 (670)
T KOG1966|consen 54 AKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAPFFLE----------SDVFFLYLLPPIVLDAGYFMPNRAFF 123 (670)
T ss_pred HHhcccccccccccCchhHHHHHHHHHHHHHHHhhhcccccccc----------ccchhhhhcCHHHhcccccCccHHHH
Confidence 333333333443 688888889999988543221 111 000 01111122233789999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHh--hhcCCCCchhHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHH
Q 003702 118 RAGKKALSIALGGISLPFALGIGTSFALRA--TVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDVGRMAMSA 195 (801)
Q Consensus 118 ~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~--~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~ 195 (801)
.|...++..|+.|.+...+...+..|.+.. .++.. ......+++|...|..+|+.+..+..|.. .|.-+--++.++
T Consensus 124 ~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~-~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~VFGE 201 (670)
T KOG1966|consen 124 ENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMS-IGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFIIVFGE 201 (670)
T ss_pred hccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEeeeehh
Confidence 999999999999999874433223333322 22212 22367889999999999999999999999 788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 003702 196 AAVNDVAAWILLALAVALSGSGRSPL------VSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPVKELYVCVTLSI 269 (801)
Q Consensus 196 a~i~D~~~i~ll~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~ 269 (801)
+++||.+.++++-+...+..-++... .....++...+.++.++.+...+.....|.+.+ ++-..-.+++.+
T Consensus 202 SLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrviePvfif~~ 278 (670)
T KOG1966|consen 202 SLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVLEPVFIFLL 278 (670)
T ss_pred hhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeeecchhhhhH
Confidence 99999999999988877654432211 111122212222333333334444444444322 344557789999
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHhhccC-----CCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHH
Q 003702 270 VLLSGFVTDSIGIHALFGAFITGVLVPK-----EGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLV 344 (801)
Q Consensus 270 ~l~~~~~ae~~g~~~~lgaf~aGl~l~~-----~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~ 344 (801)
.+.+|+.+|.+++|++++..+.|+++.. -......-.+.+-...+..-.++-|++.|.++--. ...++|..++
T Consensus 279 pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~--~h~wd~~Fi~ 356 (670)
T KOG1966|consen 279 PYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS--NHHWDFAFIC 356 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--cceeehhhhh
Confidence 9999999999999999999999999974 12222233333444445666778888999875422 2235677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC------CChHHHHHHHHHHhhhhHHHHHHHHhhc-----ccCcCChhHHHHHHHHHHH
Q 003702 345 LVIVTACFGKIVGTVAMSLACR------IPFKEALALGFLMNTKGLVELIVLNIGK-----DRKVLNDQTFAIMVLMAVF 413 (801)
Q Consensus 345 ~~i~~~~~~K~i~~~l~~~~~~------~~~~~~~~lgl~l~~kG~~~l~l~~~~~-----~~~~i~~~~~~~~v~~~lv 413 (801)
+-++.+++.|.++++..+++.+ ++..|.+.++.+ +-||.+++.+...-- .++..-..++.++.+++.+
T Consensus 357 ~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~lid~~~vp~K~~Fvttti~VIfFTVfl 435 (670)
T KOG1966|consen 357 LTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVLIDGAKVPAKNMFVTTTIAVIFFTVFL 435 (670)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEEeccccCCcccceEeeeeEEEeeeeee
Confidence 7788888999999988888763 477788887773 678887766543222 1233333444555566667
Q ss_pred HHHhHHHHHHHHcc
Q 003702 414 TTFITTPLVMAVYK 427 (801)
Q Consensus 414 ~t~i~~pl~~~l~~ 427 (801)
..+..-|+++|+--
T Consensus 436 QGiTIkplvk~L~V 449 (670)
T KOG1966|consen 436 QGITIKPLVKFLKV 449 (670)
T ss_pred cccchHHHHHHHcc
Confidence 77778999999843
No 22
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.33 E-value=1.4e-11 Score=115.66 Aligned_cols=131 Identities=20% Similarity=0.315 Sum_probs=99.5
Q ss_pred eEEEEeccCCChhHHHHHHHHhcCCCCCCCcEEEEEEeeeccCCchhhHHHhhhccCCCCccCCCCCCccchHHHHHHHH
Q 003702 452 RIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFEAF 531 (801)
Q Consensus 452 rILv~v~~~~~~~~li~Ll~~~~~~~~~~p~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 531 (801)
|||+|+++.++...+++.+..++.. .+.+++++|+++....... +..... .+..++.++.+...
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~---~~~~v~ll~v~~~~~~~~~----~~~~~~---------~~~~~~~~~~~~~~ 64 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA---QNGEIIPLNVIEVPNHSSP----SQLEVN---------VQRARKLLRQAERI 64 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc---CCCeEEEEEEEecCCCCCc----chhHHH---------HHHHHHHHHHHHHH
Confidence 6999999999999999999999854 5778999999997654332 100000 12245556666665
Q ss_pred hhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEE
Q 003702 532 RQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGIL 606 (801)
Q Consensus 532 ~~~~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgil 606 (801)
..+.++.+++.+..+ .++.++||+.|++.++|+||||+|+++... +..+|+++++|++++||||+|+
T Consensus 65 ~~~~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~------~~~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 65 AASLGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLR------DRLFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred hhhcCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCcc------ceecCchHHHHHhcCCCCEEEe
Confidence 555566777777665 479999999999999999999999876442 3358899999999999999986
No 23
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.32 E-value=1.3e-09 Score=119.00 Aligned_cols=270 Identities=20% Similarity=0.300 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHH
Q 003702 90 TVLDTLANLGLLFFLFLVGLEMDPKSIR---RAGKKA---LSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMG 163 (801)
Q Consensus 90 ~~l~~l~~~gl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg 163 (801)
...+.+.+.-+.+|.|.+|+|+..+.+. ++.|++ ..-|+.|+++|.++-..+. .. +.. .-.+|
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~~~n----~~-~~~------~~GWg 135 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFFLN----AD-TPS------QHGFG 135 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHhhee----cC-CCc------cCccc
Confidence 3456677777888999999999777654 233333 3457788888876533222 11 000 11223
Q ss_pred HHHhhccHHHHHHHHHhcC-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 003702 164 VAFSITAFPVLARILAELK-LLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVT 242 (801)
Q Consensus 164 ~~ls~Ts~~vv~~iL~el~-ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 242 (801)
+-+ .||.+....++.=+| ..++.+...+++-+++||+.+++++++.+. + .....|..+...++.++
T Consensus 136 IPm-ATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~---~i~~~~L~~a~~~~~~l------ 202 (438)
T PRK14856 136 IPM-ATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT---T---NLKFAWLLGALGVVLVL------ 202 (438)
T ss_pred ccc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---C---CCcHHHHHHHHHHHHHH------
Confidence 222 244444444443332 257788899999999999999988876552 2 22333333332222111
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCc---------------------
Q 003702 243 PIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPF--------------------- 301 (801)
Q Consensus 243 ~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~--------------------- 301 (801)
++.+|.. ++....++++.+++.. .....|+|+.++..++|+++|..++.
T Consensus 203 ----~~ln~~~----v~~~~~Y~~~G~~lW~--~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (438)
T PRK14856 203 ----AVLNRLN----VRSLIPYLLLGVLLWF--CVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGA 272 (438)
T ss_pred ----HHHHHcC----CccccHHHHHHHHHHH--HHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhcccccc
Confidence 2223321 2334445555554444 34478999999999999999953221
Q ss_pred -----------------------hHHHHHHHHHHHHHHHHHHH-HHHhcccccccccchhhhHHHHHHHHHHHHHHHHHH
Q 003702 302 -----------------------AGALVEKVEDLVSGLLLPLY-FVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVG 357 (801)
Q Consensus 302 -----------------------~~~l~~kl~~~~~~~~~plf-F~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~ 357 (801)
.+++++.+.+.+..+.+|+| |.-.|..++...... .-.....+++..++||.+|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~--~~pv~lGI~~GLvvGK~lG 350 (438)
T PRK14856 273 LLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLE--VDKVLLGVILGLCLGKPLG 350 (438)
T ss_pred ccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhc--cCcHHHHHHHHHHhcchHH
Confidence 24567778888988999999 999999987542221 1223456677888999999
Q ss_pred HHHHHHHc----------CCChHHHHHHHHHHhhhhHHHHHHHHhhcc
Q 003702 358 TVAMSLAC----------RIPFKEALALGFLMNTKGLVELIVLNIGKD 395 (801)
Q Consensus 358 ~~l~~~~~----------~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~ 395 (801)
.+..++.. +++|++-.-.|++-+.-=++++.+.+.+++
T Consensus 351 I~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 398 (438)
T PRK14856 351 IFLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFT 398 (438)
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88887763 468999888888544444789999998884
No 24
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.27 E-value=1.6e-09 Score=116.55 Aligned_cols=270 Identities=18% Similarity=0.268 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCchhHHHHHH
Q 003702 91 VLDTLANLGLLFFLFLVGLEMDPKSIR---RAGKKA---LSIALGGISLPFALGIGTSFALRAT-VSKGVDQAPFLIFMG 163 (801)
Q Consensus 91 ~l~~l~~~gl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~-~~~~~~~~~~~l~lg 163 (801)
..+.+.+.-+.+|.|.+|+|+..+.+. ++.|++ ..-|+.|+++|.++-+.+.. ... ...+| |
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n~--g~~~~~~GW---------g 127 (389)
T PRK09560 59 LLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFNY--NNPETLRGW---------A 127 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCcccCcc---------c
Confidence 345566777788999999999877654 233333 34577888888765332221 100 01122 2
Q ss_pred HHHhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 003702 164 VAFSITAFPVLARILAEL-KLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVT 242 (801)
Q Consensus 164 ~~ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 242 (801)
+-+ .||.+....++.=+ +..+..+...+++-+++||+.+++++++.+. ++ ....|.......+.++
T Consensus 128 IPm-ATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt---~~---i~~~~L~~a~~~~~~l------ 194 (389)
T PRK09560 128 IPA-ATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT---SD---LSLPALALAAIAIAVL------ 194 (389)
T ss_pred ccc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CC---CCHHHHHHHHHHHHHH------
Confidence 222 24444444444333 2367778899999999999999988876552 21 2333333332221111
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCc------hHHHHHHHHHHHHHH
Q 003702 243 PIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPF------AGALVEKVEDLVSGL 316 (801)
Q Consensus 243 ~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~------~~~l~~kl~~~~~~~ 316 (801)
++.+|.. ++....++.+..++.. .....|+|+.++..++|+++|...+. .+++++++++.++.+
T Consensus 195 ----~~ln~~~----v~~~~~Y~~~G~~lW~--~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~ 264 (389)
T PRK09560 195 ----FLLNRLG----VTKLTPYLIVGAILWF--AVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFA 264 (389)
T ss_pred ----HHHHHcC----CccchHHHHHHHHHHH--HHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhh
Confidence 2223321 2334455555554444 34467999999999999999963221 367889999999888
Q ss_pred HHHHH-HHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCChHHHHHHHHHHhhhhHH
Q 003702 317 LLPLY-FVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLAC----------RIPFKEALALGFLMNTKGLV 385 (801)
Q Consensus 317 ~~plf-F~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~l~~kG~~ 385 (801)
.+|+| |.-.|..++-..+.+ ..-.....+++..++||.+|.+..++.. +.+|++-...|++-+.-=++
T Consensus 265 IlPlFAlaNAGV~l~~~~~~~-~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTm 343 (389)
T PRK09560 265 ILPLFAFANAGVSLAGISLSS-LTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTM 343 (389)
T ss_pred hHHHHHhhcCCeeecCCcHHh-ccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 89999 889998884322322 1122345667788889999988887763 46899999888854444478
Q ss_pred HHHHHHhhcc
Q 003702 386 ELIVLNIGKD 395 (801)
Q Consensus 386 ~l~l~~~~~~ 395 (801)
++.+...++.
T Consensus 344 SLFIa~LAF~ 353 (389)
T PRK09560 344 SLFIGSLAFG 353 (389)
T ss_pred HHHHHHhhcC
Confidence 9999998883
No 25
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.23 E-value=3.1e-09 Score=114.13 Aligned_cols=270 Identities=20% Similarity=0.317 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCchhHHHHHH
Q 003702 91 VLDTLANLGLLFFLFLVGLEMDPKSIR---RAGKKA---LSIALGGISLPFALGIGTSFALRAT-VSKGVDQAPFLIFMG 163 (801)
Q Consensus 91 ~l~~l~~~gl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~-~~~~~~~~~~~l~lg 163 (801)
..+.+.+.-+.+|.|.+|+|+..+.+. ++.|++ ..-|+.|+++|.++-..+.. ... ...+| |
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~~n~--~~~~~~~GW---------a 127 (388)
T PRK09561 59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLLFNY--ADPVTREGW---------A 127 (388)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCcccCcc---------c
Confidence 445566777788999999999887664 233333 34577888888765332221 100 01122 2
Q ss_pred HHHhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 003702 164 VAFSITAFPVLARILAEL-KLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVT 242 (801)
Q Consensus 164 ~~ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 242 (801)
+-+ .||.+....++.=+ +..+..+....++-+++||+.+++++++.+. + .....+.......+. +.
T Consensus 128 IP~-ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~---~i~~~~L~~a~~~~~--~l---- 194 (388)
T PRK09561 128 IPA-ATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT---S---DLSMVSLGVAAVAIA--VL---- 194 (388)
T ss_pred ccc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---C---CccHHHHHHHHHHHH--HH----
Confidence 221 24444444443333 3367778899999999999999988876552 2 122222222221111 11
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCC----chHHHHHHHHHHHHHHHH
Q 003702 243 PIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGP----FAGALVEKVEDLVSGLLL 318 (801)
Q Consensus 243 ~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~----~~~~l~~kl~~~~~~~~~ 318 (801)
++.+|.. .+....++++..++.. .....|+|+.++..++|+.+|...+ ..+++++++++.+..+.+
T Consensus 195 ----~~ln~~~----v~~~~~Y~~~G~~lW~--~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~Il 264 (388)
T PRK09561 195 ----AVLNLCG----VRRTSVYILVGVVLWV--AVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLIL 264 (388)
T ss_pred ----HHHHHcC----CccchHHHHHHHHHHH--HHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeH
Confidence 2223321 2334455555554444 3447899999999999999996322 246789999999989999
Q ss_pred HHH-HHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCChHHHHHHHHHHhhhhHHHH
Q 003702 319 PLY-FVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLAC----------RIPFKEALALGFLMNTKGLVEL 387 (801)
Q Consensus 319 plf-F~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~l~~kG~~~l 387 (801)
|+| |.-.|..++-..+.. ..-.....+++..++||.+|.+..++.. +++|++-.-.|++-+..=++++
T Consensus 265 PlFAfaNAGV~l~~~~~~~-~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSL 343 (388)
T PRK09561 265 PLFAFANAGVSLQGVTLDG-LTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSI 343 (388)
T ss_pred HHHHhhcCCeeeccCcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999 888998883222221 1112344566788889999988887763 4689999988885444447889
Q ss_pred HHHHhhcc
Q 003702 388 IVLNIGKD 395 (801)
Q Consensus 388 ~l~~~~~~ 395 (801)
.+.+.+++
T Consensus 344 FIa~LAF~ 351 (388)
T PRK09561 344 FIASLAFG 351 (388)
T ss_pred HHHHHhcC
Confidence 89998885
No 26
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.20 E-value=9.2e-09 Score=110.19 Aligned_cols=272 Identities=17% Similarity=0.216 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHH
Q 003702 91 VLDTLANLGLLFFLFLVGLEMDPKSIR---RAGKKA---LSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGV 164 (801)
Q Consensus 91 ~l~~l~~~gl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~ 164 (801)
..+.+.+.-+.+|.|.+|+|+..+.+. ++.|++ ..-|+.|+++|.++-..+.. ......+| |+
T Consensus 56 l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~--~~~~~~GW---------~I 124 (383)
T PRK14854 56 LMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINH--DIKVINGW---------AI 124 (383)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhcc--CCcccCcc---------cc
Confidence 345566777788999999999877654 233333 34577889988766443322 11111122 22
Q ss_pred HHhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 003702 165 AFSITAFPVLARILAEL-KLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVTP 243 (801)
Q Consensus 165 ~ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 243 (801)
-+ .||.+....++.=+ +..+..+.-..++-+++||+.+++++++.+. ++ ....+....... +.+.+
T Consensus 125 P~-ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt---~~---i~~~~L~~A~~~--~~~l~---- 191 (383)
T PRK14854 125 PS-ATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYT---KS---LSLLSLSLGTLF--ILAMI---- 191 (383)
T ss_pred cc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CC---ccHHHHHHHHHH--HHHHH----
Confidence 22 24433333333323 2367788888899999999999988876552 21 222222222111 11111
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC----CchHHHHHHHHHHHHHHHHH
Q 003702 244 IFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEG----PFAGALVEKVEDLVSGLLLP 319 (801)
Q Consensus 244 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~----~~~~~l~~kl~~~~~~~~~p 319 (801)
+.+|.. + ++....++++..++.. .....|+|+.++..+.|+++|... .-.+++++++++.++.+.+|
T Consensus 192 ----~~nr~~-~--v~~~~~Y~~~G~~lW~--~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlP 262 (383)
T PRK14854 192 ----ICNRIF-K--INRSSVYVVLGFFAWF--CTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILP 262 (383)
T ss_pred ----HHHHhc-C--CceehHHHHHHHHHHH--HHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHH
Confidence 112210 0 2233444455544443 445789999999999999999632 12367889999999999999
Q ss_pred HH-HHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCChHHHHHHHHHHhhhhHHHHH
Q 003702 320 LY-FVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLAC----------RIPFKEALALGFLMNTKGLVELI 388 (801)
Q Consensus 320 lf-F~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~l~~kG~~~l~ 388 (801)
+| |.-.|..++-..+.. ........+++..++||.+|.+..++.. +++|++-...|++-+.-=++++.
T Consensus 263 lFA~aNAGV~l~~~~~~~-~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLF 341 (383)
T PRK14854 263 VFAFANAGISFSGISFSI-LFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLF 341 (383)
T ss_pred HHHhhcCCeeeccCcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99 889998884222221 1122344667788889999988887753 46899999999854444478999
Q ss_pred HHHhhccc
Q 003702 389 VLNIGKDR 396 (801)
Q Consensus 389 l~~~~~~~ 396 (801)
+.+.+++.
T Consensus 342 Ia~LAF~~ 349 (383)
T PRK14854 342 IGVLAFND 349 (383)
T ss_pred HHHhhCCC
Confidence 99988853
No 27
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.19 E-value=6.9e-09 Score=112.93 Aligned_cols=287 Identities=22% Similarity=0.274 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHH
Q 003702 91 VLDTLANLGLLFFLFLVGLEMDPKSIR---RAGKKA---LSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGV 164 (801)
Q Consensus 91 ~l~~l~~~gl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~ 164 (801)
..+.+.+--+.+|.|.+|+|+..+.+. ++.|++ ..-|+.|+++|.++-.. +...-+ . .-.+|+
T Consensus 63 l~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~~----~n~~~~-~------~~GWgI 131 (423)
T PRK14855 63 LEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTA----LNAGGP-G------ASGWGV 131 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHhe----eecCCC-c------cCcccc
Confidence 445566777788999999999877664 233433 34577788888765332 211100 0 112232
Q ss_pred HHhhccHHHHHHHHHhcC-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 003702 165 AFSITAFPVLARILAELK-LLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVTP 243 (801)
Q Consensus 165 ~ls~Ts~~vv~~iL~el~-ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 243 (801)
-+ .||.+....++.=+| ..+..+...+++-+++||+.+++++++.+. ++ ....+..+..+.+. +.
T Consensus 132 Pm-ATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~---i~~~~L~~a~~~~~-~l------ 197 (423)
T PRK14855 132 PM-ATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT---SG---LNLLALLLAALTWA-LA------ 197 (423)
T ss_pred cc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC---CC---CCHHHHHHHHHHHH-HH------
Confidence 22 245444444444343 256678899999999999999988876552 21 22333333222111 11
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCC-CCc---------------------
Q 003702 244 IFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKE-GPF--------------------- 301 (801)
Q Consensus 244 ~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~-~~~--------------------- 301 (801)
++.+|.. ++....++.+.+++.. .....|+|+.++..++|+++|.. .+.
T Consensus 198 ---~~ln~~~----v~~~~~Y~~~G~~lW~--~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (423)
T PRK14855 198 ---LLAGRLG----VTSLKIYAVLGALLWF--FVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGA 268 (423)
T ss_pred ---HHHHHcC----CccccHHHHHHHHHHH--HHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhH
Confidence 2223321 2334445555554444 34478999999999999999963 111
Q ss_pred ---------------hHHHHHHHHHHHHHHHHHHH-HHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 003702 302 ---------------AGALVEKVEDLVSGLLLPLY-FVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLAC 365 (801)
Q Consensus 302 ---------------~~~l~~kl~~~~~~~~~plf-F~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~ 365 (801)
.+++++++++.+..+.+|+| |.-.|..++-.. .. .....+++..++||.+|.+..++..
T Consensus 269 ~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~----pv~lGI~~GLvvGK~lGI~~~s~la 343 (423)
T PRK14855 269 RLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG----TVSLGVFLGLLLGKPLGVVGGAWLA 343 (423)
T ss_pred HHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC----cHHHHHHHHHHhcchHHHHHHHHHH
Confidence 24677888899988999999 889999884333 22 2344566778889999988887763
Q ss_pred ----------CCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCChhHHHHHHHHHHHHHH
Q 003702 366 ----------RIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTF 416 (801)
Q Consensus 366 ----------~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~~v~~~lv~t~ 416 (801)
+++|++-.-.|++-+.-=++++.+.+.+++.....++.-..+.+++++..+
T Consensus 344 vkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~aKigIL~~S~~aai 404 (423)
T PRK14855 344 VRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFADAALLTQAKLGVLAASVLAAL 404 (423)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHH
Confidence 468999998888544444789999998885432223333333344444333
No 28
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=99.02 E-value=2.1e-09 Score=115.45 Aligned_cols=280 Identities=20% Similarity=0.336 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHH
Q 003702 90 TVLDTLANLGLLFFLFLVGLEMDPKSIR---RAGKKA---LSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMG 163 (801)
Q Consensus 90 ~~l~~l~~~gl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg 163 (801)
...+.+.+--+.+|.|.+|+|+..+.+. ++.||+ ..-++.|+++|..+-.. +.... + ...-.+|
T Consensus 54 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl~----~n~~~--~----~~~~GW~ 123 (378)
T PF06965_consen 54 SLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYLA----FNAGG--P----EAAHGWA 123 (378)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG----G--SS--T----THHHHTS
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHhe----eecCC--C----CcCceEE
Confidence 3456677777888999999999877654 233333 34577788888755322 11110 0 0122233
Q ss_pred HHHhhccHHHHHHHHHhcC-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 003702 164 VAFSITAFPVLARILAELK-LLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVT 242 (801)
Q Consensus 164 ~~ls~Ts~~vv~~iL~el~-ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 242 (801)
+- ..||.+....++.=+| ..+..+...+++-+++||+.+++++++.+. ++ ....+....... .++.
T Consensus 124 IP-~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~~---i~~~~L~~a~~~-~~~l----- 190 (378)
T PF06965_consen 124 IP-MATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---DG---ISLLWLLLAAAA-LLLL----- 190 (378)
T ss_dssp SS-S---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS-----------HHHHHHHHHH-HHHH-----
T ss_pred ec-ccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---CC---CCHHHHHHHHHH-HHHH-----
Confidence 22 2355555555554343 356778899999999999999988887652 21 222222222211 1111
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCc--------hHHHHHHHHHHHH
Q 003702 243 PIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPF--------AGALVEKVEDLVS 314 (801)
Q Consensus 243 ~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~--------~~~l~~kl~~~~~ 314 (801)
|..+|.. .+....+..+.+++ -+.....|+|+.++..+.|+++|..++. .+++++++++.++
T Consensus 191 ----~~l~r~~----v~~~~~Y~~~G~~l--W~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~ 260 (378)
T PF06965_consen 191 ----FVLNRLG----VRSLWPYLLLGILL--WYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVA 260 (378)
T ss_dssp ----HHHHHTT-------THHHHHHHHHH--HHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHH
T ss_pred ----HHHHHCC----CceehHHHHHHHHH--HHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhh
Confidence 2233321 22233444444333 2344578999999999999999974444 2478899999999
Q ss_pred HHHHHHH-HHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCChHHHHHHHHHHhhhh
Q 003702 315 GLLLPLY-FVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLAC----------RIPFKEALALGFLMNTKG 383 (801)
Q Consensus 315 ~~~~plf-F~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~l~~kG 383 (801)
.+.+|+| |.-.|..++-..+... .-.....+++..+++|.+|.+..++.. +++|++-...|++-+.-=
T Consensus 261 ~~IlPlFAlaNAGV~l~~~~~~~~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGF 339 (378)
T PF06965_consen 261 FVILPLFALANAGVSLSGSSLGDL-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGF 339 (378)
T ss_dssp HTHHHHHHHHHS----SSS---TH-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--H
T ss_pred hhhHHhHhheeCceEEecCchHhh-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999 9999999886554431 222334566778899999988877653 457888888888544444
Q ss_pred HHHHHHHHhhcccCcCChhH
Q 003702 384 LVELIVLNIGKDRKVLNDQT 403 (801)
Q Consensus 384 ~~~l~l~~~~~~~~~i~~~~ 403 (801)
++++.+...+++.....++.
T Consensus 340 TmSLFIa~LAF~~~~~~~~a 359 (378)
T PF06965_consen 340 TMSLFIAGLAFDDPALQNAA 359 (378)
T ss_dssp HHHHHHHHHHSTT-SSHHHH
T ss_pred HHHHHHHHHHcCChhhhhHH
Confidence 78999999999874444333
No 29
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.92 E-value=1.1e-08 Score=98.01 Aligned_cols=139 Identities=10% Similarity=0.141 Sum_probs=87.6
Q ss_pred eEEEEeccCCChhHHHHHHHHhcCCCCCCCcEEEEEEeeeccCCchhhH-HHhhhccCCCCccCCCCCCccchHHHHHHH
Q 003702 452 RIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAIL-MVHKARKNGVPFWNKGKRSDCDQVVVAFEA 530 (801)
Q Consensus 452 rILv~v~~~~~~~~li~Ll~~~~~~~~~~p~~v~~lhlvel~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 530 (801)
+||+|+++.++...+++.+-.+... ...+++++|+++......... ..... .. . .++. .+..++.++.+..
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~---~~~~l~ll~v~~~~~~~~~~~~~~~~~-~~-~--~~~~-~~~~~~~l~~~~~ 72 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLAT---KGQTIVLVHVHPPITSIPSSSGKLEVA-SA-Y--KQEE-DKEAKELLLPYRC 72 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccC---CCCcEEEEEeccCcccCCCCccchHHH-HH-H--HHHH-HHHHHHHHHHHHH
Confidence 4899999999999999888877643 566899999987542211000 00000 00 0 0000 0112233333322
Q ss_pred HhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhH-HHHHHHhhcCC--CceEEE
Q 003702 531 FRQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFR-WVNKRVLEHAS--CSVGIL 606 (801)
Q Consensus 531 ~~~~~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~-~v~~~vl~~ap--csVgil 606 (801)
..+..++.++...... .+.++.|++.|++.++|+||||.|++.... +..++ ++.++|++++| |||.|+
T Consensus 73 ~~~~~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~------~~~~gssva~~Vi~~a~~~c~Vlvv 143 (146)
T cd01989 73 FCSRKGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFS------MKFKKSDVASSVLKEAPDFCTVYVV 143 (146)
T ss_pred HHhhcCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCcee------ecccCCchhHHHHhcCCCCceEEEE
Confidence 2222455655555433 478999999999999999999999764332 23355 69999999999 999885
No 30
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.91 E-value=3.8e-07 Score=94.14 Aligned_cols=262 Identities=18% Similarity=0.303 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHhhccChhHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHHhhhc---CCCCchhHHHHHHHH
Q 003702 95 LANLGLLFFLFLVGLEMDPKSIR---RAGKKA---LSIALGGISLPFALGIGTSFALRATVS---KGVDQAPFLIFMGVA 165 (801)
Q Consensus 95 l~~~gl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~---~~~~~~~~~l~lg~~ 165 (801)
+-+--..+|.+.+|+|+..+.+. +++|++ ..-|+.|++.|.++-. ++...-+ .+|..
T Consensus 66 INDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAliy~----~~n~~~p~~~~GWaI---------- 131 (390)
T COG3004 66 INDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALIYL----ALNAGDPATLEGWAI---------- 131 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhHhh----eeecCChhhhcCcCc----------
Confidence 33334556788899999988775 344443 3456678888865422 2221111 12221
Q ss_pred HhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 003702 166 FSITAFPVLARILAEL-KLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVTPI 244 (801)
Q Consensus 166 ls~Ts~~vv~~iL~el-~ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 244 (801)
-+.|+.+....++.-+ +..++.+.-..++-+++||+-++++.++... ++ ....+.....++. ++.. .
T Consensus 132 P~ATDiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~~---Ls~~al~~a~~~i-~vL~-----~ 199 (390)
T COG3004 132 PMATDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT---TD---LSMAALGIAALAI-AVLA-----V 199 (390)
T ss_pred ccHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc---CC---ccHHHHHHHHHHH-HHHH-----H
Confidence 1234544444444444 4478888899999999999999988876652 21 2222222222111 1111 1
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC----CchHHHHHHHHHHHHHHHHHH
Q 003702 245 FKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEG----PFAGALVEKVEDLVSGLLLPL 320 (801)
Q Consensus 245 ~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~----~~~~~l~~kl~~~~~~~~~pl 320 (801)
+.|+. ++....+++...++..+.+ .-|+|..++..+.|+++|-.. +.-+++++.+.+.+..+.+|+
T Consensus 200 lN~~~--------v~~l~~Y~~~gviLW~~vl--kSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPl 269 (390)
T COG3004 200 LNRLG--------VRRLSPYLLVGVILWIAVL--KSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPL 269 (390)
T ss_pred HHHhC--------chhhhHHHHHHHHHHHHHH--HhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHH
Confidence 12211 2234455566666665443 679999999999999999533 334678888999999999999
Q ss_pred H-HHHhccccc---ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCChHHHHHHHHHHhhhhHHH
Q 003702 321 Y-FVSSGLKTN---ITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLAC----------RIPFKEALALGFLMNTKGLVE 386 (801)
Q Consensus 321 f-F~~~G~~id---l~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~l~~kG~~~ 386 (801)
| |.-.|.+++ ...+.+ .....++...+++|.+|.+..++.. +.+|++-...+++-+..=+++
T Consensus 270 FaFaNAGvsl~g~~~~~l~s----~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMS 345 (390)
T COG3004 270 FAFANAGVSLQGVSLSGLTS----PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMS 345 (390)
T ss_pred HHHccCCccccccccccccc----chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHH
Confidence 9 999998877 444432 3345667788999999998888763 458888888888444444688
Q ss_pred HHHHHhhccc
Q 003702 387 LIVLNIGKDR 396 (801)
Q Consensus 387 l~l~~~~~~~ 396 (801)
+.+...+++.
T Consensus 346 lFI~~LAf~~ 355 (390)
T COG3004 346 LFIASLAFGS 355 (390)
T ss_pred HHHHHHhcCC
Confidence 8888888765
No 31
>PRK15456 universal stress protein UspG; Provisional
Probab=98.85 E-value=9.2e-09 Score=98.22 Aligned_cols=134 Identities=11% Similarity=0.094 Sum_probs=85.3
Q ss_pred ceEEEEeccCC--ChhHHHHHHHHhcCCCCCCCcEEEEEEeeeccCCchhhHHHhhhccCCCCccCCCCCCccchHHHHH
Q 003702 451 LRIFACFHTAS--NVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAF 528 (801)
Q Consensus 451 lrILv~v~~~~--~~~~li~Ll~~~~~~~~~~p~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 528 (801)
.|||+|++..+ +...+++.+..++.. . .+++++|+++...... . .........+.+ ...++..+.+
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~---~-~~l~llhv~~~~~~~~-~---~~~~~~~~~~~~----~~~~~~~~~l 70 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQD---D-GVIHLLHVLPGSASLS-L---HRFAADVRRFEE----HLQHEAEERL 70 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhc---C-CeEEEEEEecCccccc-c---cccccchhhHHH----HHHHHHHHHH
Confidence 37999999974 778888877777632 3 3799999997542111 0 000000000000 0111222223
Q ss_pred HHHhh---ccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEE
Q 003702 529 EAFRQ---LSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGI 605 (801)
Q Consensus 529 ~~~~~---~~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgi 605 (801)
+.+.+ ..++.++..+.. .+..++|++.|++.++||||||.|++. . .+..+|++.++|++++||||.|
T Consensus 71 ~~~~~~~~~~~~~v~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~-~------~~~llGS~a~~v~~~a~~pVLv 140 (142)
T PRK15456 71 QTMVSHFTIDPSRIKQHVRF---GSVRDEVNELAEELGADVVVIGSRNPS-I------STHLLGSNASSVIRHANLPVLV 140 (142)
T ss_pred HHHHHHhCCCCcceEEEEcC---CChHHHHHHHHhhcCCCEEEEcCCCCC-c------cceecCccHHHHHHcCCCCEEE
Confidence 33322 245666666655 488999999999999999999999642 2 2335899999999999999988
Q ss_pred E
Q 003702 606 L 606 (801)
Q Consensus 606 l 606 (801)
+
T Consensus 141 V 141 (142)
T PRK15456 141 V 141 (142)
T ss_pred e
Confidence 6
No 32
>PRK15005 universal stress protein F; Provisional
Probab=98.84 E-value=1.7e-08 Score=96.45 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=83.3
Q ss_pred ceEEEEeccCCC--hhHHHHHHHHhcCCCCCCCcEEEEEEeeeccCCchhhHHHhhhccCCCCccCCCCCCccchHHHHH
Q 003702 451 LRIFACFHTASN--VPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAF 528 (801)
Q Consensus 451 lrILv~v~~~~~--~~~li~Ll~~~~~~~~~~p~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 528 (801)
.+||+|+++.++ ...+++.+..++. ....+++++|+++........-.... ......+ ...++..+.+
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~---~~~~~l~ll~v~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~l 72 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAK---IDDAEVHFLTVIPSLPYYASLGLAYS---AELPAMD----DLKAEAKSQL 72 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHh---ccCCeEEEEEEEccCccccccccccc---ccchHHH----HHHHHHHHHH
Confidence 379999999887 3567776666653 24567999999975321110000000 0000000 0111222233
Q ss_pred HHHhhc---cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEE
Q 003702 529 EAFRQL---SRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGI 605 (801)
Q Consensus 529 ~~~~~~---~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgi 605 (801)
+++.++ .++.++..+.. .+..+.|++.|++.++||||||.|++ .. .+..+|++..+|++++||||.+
T Consensus 73 ~~~~~~~~~~~~~~~~~v~~---G~p~~~I~~~a~~~~~DLIV~Gs~~~-~~------~~~llGS~a~~vl~~a~cpVlv 142 (144)
T PRK15005 73 EEIIKKFKLPTDRVHVHVEE---GSPKDRILELAKKIPADMIIIASHRP-DI------TTYLLGSNAAAVVRHAECSVLV 142 (144)
T ss_pred HHHHHHhCCCCCceEEEEeC---CCHHHHHHHHHHHcCCCEEEEeCCCC-Cc------hheeecchHHHHHHhCCCCEEE
Confidence 333322 34455555543 47889999999999999999998842 22 2345899999999999999988
Q ss_pred E
Q 003702 606 L 606 (801)
Q Consensus 606 l 606 (801)
+
T Consensus 143 V 143 (144)
T PRK15005 143 V 143 (144)
T ss_pred e
Confidence 5
No 33
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.81 E-value=2.5e-08 Score=95.44 Aligned_cols=133 Identities=7% Similarity=0.040 Sum_probs=82.9
Q ss_pred ceEEEEeccCCChhHHHHHHHHhcCCCCCCCcEEEEEEeeeccCCchhhHHHhhhccCCCCccCCCCCCccchHHHHHHH
Q 003702 451 LRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFEA 530 (801)
Q Consensus 451 lrILv~v~~~~~~~~li~Ll~~~~~~~~~~p~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 530 (801)
-|||++++..++...+++.+..++.. ...+++++|+.+.......... . ....... ....++..+.++.
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~~~--~--~~~~~~~----~~~~~~~~~~l~~ 72 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARP---YNAKVSLIHVDVNYSDLYTGLI--D--VNLGDMQ----KRISEETHHALTE 72 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHh---hCCEEEEEEEccChhhhhhhhh--h--cchHHHH----HHHHHHHHHHHHH
Confidence 47999999999988888877776632 4568999998432111000000 0 0000000 0112233344454
Q ss_pred HhhccceEEE-EeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEE
Q 003702 531 FRQLSRVFIR-PMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGIL 606 (801)
Q Consensus 531 ~~~~~~v~v~-~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgil 606 (801)
+.+..++.+. ..... .+.++.|++.|++.++||||||.|++ + . + .++++.++|+++|||||.++
T Consensus 73 ~~~~~~~~~~~~~~~~---G~p~~~I~~~a~~~~~DLIV~Gs~~~----~-~---~-~lgSva~~v~~~a~~pVLvv 137 (144)
T PRK15118 73 LSTNAGYPITETLSGS---GDLGQVLVDAIKKYDMDLVVCGHHQD----F-W---S-KLMSSARQLINTVHVDMLIV 137 (144)
T ss_pred HHHhCCCCceEEEEEe---cCHHHHHHHHHHHhCCCEEEEeCccc----H-H---H-HHHHHHHHHHhhCCCCEEEe
Confidence 4443344432 22222 47899999999999999999999942 1 1 1 26799999999999999997
No 34
>PRK09982 universal stress protein UspD; Provisional
Probab=98.80 E-value=2e-08 Score=95.94 Aligned_cols=133 Identities=7% Similarity=0.010 Sum_probs=82.3
Q ss_pred ceEEEEeccCCChhHHHHHHHHhcCCCCCCCcEEEEEEeeeccCCchhhHHHhhhccCCCCccCCCCCCccchHHHHHHH
Q 003702 451 LRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFEA 530 (801)
Q Consensus 451 lrILv~v~~~~~~~~li~Ll~~~~~~~~~~p~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 530 (801)
-+||+++++.++...++..+..++. ..+.+++++|+++......+.. .....+.. .+ ...++..+.++.
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~---~~~a~l~llhV~~~~~~~~~~~--~~~~~~~~--~~----~~~~~~~~~l~~ 72 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELAR---HNDAHLTLIHIDDGLSELYPGI--YFPATEDI--LQ----LLKNKSDNKLYK 72 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHH---HhCCeEEEEEEccCcchhchhh--hccchHHH--HH----HHHHHHHHHHHH
Confidence 3799999999999988887777763 3567899999987432111000 00000000 00 011111222333
Q ss_pred Hhhc-cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEE
Q 003702 531 FRQL-SRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGIL 606 (801)
Q Consensus 531 ~~~~-~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgil 606 (801)
..++ ....++..+.. .+.++.||+.|++.++||||||.| +. | + +..++ +.++|+++|+|||.|+
T Consensus 73 ~~~~~~~~~~~~~v~~---G~p~~~I~~~A~~~~aDLIVmG~~-~~---~-~---~~~~~-va~~V~~~s~~pVLvv 137 (142)
T PRK09982 73 LTKNIQWPKTKLRIER---GEMPETLLEIMQKEQCDLLVCGHH-HS---F-I---NRLMP-AYRGMINKMSADLLIV 137 (142)
T ss_pred HHHhcCCCcceEEEEe---cCHHHHHHHHHHHcCCCEEEEeCC-hh---H-H---HHHHH-HHHHHHhcCCCCEEEe
Confidence 3322 22334444444 489999999999999999999976 32 1 1 12344 9999999999999986
No 35
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.80 E-value=2.8e-08 Score=92.33 Aligned_cols=122 Identities=14% Similarity=0.105 Sum_probs=87.5
Q ss_pred eEEEEeccCCChhHHHHHHHHhcCCCCCCCcEEEEEEeeeccCCchhhHHHhhhccCCCCccCCCCCCccchHHHHHHHH
Q 003702 452 RIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFEAF 531 (801)
Q Consensus 452 rILv~v~~~~~~~~li~Ll~~~~~~~~~~p~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 531 (801)
|||+|+++.+....+++.+..++.. .+..++++|+++-... . . .+..++.++.+.+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~---~~~~l~ll~v~~~~~~--~-----------~-------~~~~~~~l~~~~~~ 57 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADR---LKAPWYVVYVETPRLN--R-----------L-------SEAERRRLAEALRL 57 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHH---hCCCEEEEEEecCccc--c-----------C-------CHHHHHHHHHHHHH
Confidence 6899999999999999988887743 5668999999863221 0 0 01123444444444
Q ss_pred hhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcC-CCceEEE
Q 003702 532 RQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHA-SCSVGIL 606 (801)
Q Consensus 532 ~~~~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~a-pcsVgil 606 (801)
.++.++. ..+..+ .+..+.|++.|++.++|+|+||+|+++.. .+..+|++.++|+++| ||||.|.
T Consensus 58 ~~~~~~~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~------~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 58 AEELGAE--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRW------RELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred HHHcCCE--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchH------HHHhcccHHHHHHHhCCCCeEEEe
Confidence 4333333 333333 57899999999999999999999976433 3345889999999999 9999875
No 36
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.75 E-value=2.7e-08 Score=93.32 Aligned_cols=133 Identities=14% Similarity=0.200 Sum_probs=87.8
Q ss_pred ceEEEEeccCCChhHHHHHHHHhcCCCCCCCcEEEEEEeeeccCCchhhHHHhhhccCCCCccCCCCCCccchHHHHHH-
Q 003702 451 LRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFE- 529 (801)
Q Consensus 451 lrILv~v~~~~~~~~li~Ll~~~~~~~~~~p~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~- 529 (801)
-|||+|+++.++...+++.+..+.. .....++++|+++................. ..+.......
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~---~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 68 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAK---RSGAEITLLHVIPPPPQYSFSAAEDEESEE-----------EAEEEEQARQA 68 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHH---HHTCEEEEEEEEESCHCHHHHHHHHHHHHH-----------HHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHH---hhCCeEEEEEeecccccccccccccccccc-----------ccchhhhhhhH
Confidence 3899999999988888877777663 256789999999977655432111111000 0000000000
Q ss_pred --HH-hhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEE
Q 003702 530 --AF-RQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGIL 606 (801)
Q Consensus 530 --~~-~~~~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgil 606 (801)
.. .............. .+..+.|++.|++.++|+||||.|++....+ ..++++.+++++++||||.|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~------~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 69 EAEEAEAEGGIVIEVVIES---GDVADAIIEFAEEHNADLIVMGSRGRSGLER------LLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHHHHTTSEEEEEEEE---SSHHHHHHHHHHHTTCSEEEEESSSTTSTTT------SSSHHHHHHHHHHTSSEEEEE
T ss_pred HHHHHhhhccceeEEEEEe---eccchhhhhccccccceeEEEeccCCCCccC------CCcCCHHHHHHHcCCCCEEEe
Confidence 11 11123333333333 4899999999999999999999997543333 358999999999999999886
No 37
>PRK10116 universal stress protein UspC; Provisional
Probab=98.64 E-value=2.3e-07 Score=88.33 Aligned_cols=136 Identities=13% Similarity=0.077 Sum_probs=85.0
Q ss_pred ceEEEEeccCCChhHHHHHHHHhcCCCCCCCcEEEEEEeeeccCCchhhHHHhhhccCCCCccCCCCCCccchHHHHHHH
Q 003702 451 LRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFEA 530 (801)
Q Consensus 451 lrILv~v~~~~~~~~li~Ll~~~~~~~~~~p~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 530 (801)
.+||++++..++...++..+..++.. ...+++++|+++........ .... .+ . .. ....++..+.++.
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~---~~a~l~ll~v~~~~~~~~~~--~~~~-~~--~-~~---~~~~~~~~~~l~~ 71 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARP---VNGKISLITLASDPEMYNQF--AAPM-LE--D-LR---SVMQEETQSFLDK 71 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHH---hCCEEEEEEEccCcccchhh--hHHH-HH--H-HH---HHHHHHHHHHHHH
Confidence 47999999999888888877777632 45679999998653211111 0000 00 0 00 0112223334454
Q ss_pred HhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEEec
Q 003702 531 FRQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVD 608 (801)
Q Consensus 531 ~~~~~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgilvd 608 (801)
+.+..++....... ...+..+.|++.|++.++||||+|.|++.... + +.++..+|++++||||.|+..
T Consensus 72 ~~~~~~~~~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~------~--~~s~a~~v~~~~~~pVLvv~~ 139 (142)
T PRK10116 72 LIQDADYPIEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFFS------R--ASCSAKRVIASSEVDVLLVPL 139 (142)
T ss_pred HHHhcCCCeEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHH------H--HHHHHHHHHhcCCCCEEEEeC
Confidence 44433443322111 34688999999999999999999999653221 1 236889999999999999843
No 38
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.63 E-value=2.2e-07 Score=88.98 Aligned_cols=137 Identities=11% Similarity=0.121 Sum_probs=87.1
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEeccCCCCcccccccC---CCCCCcccccHHHHHHHHHhhccCCCce
Q 003702 625 VITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADT---NDAESTGESADEIFLAEVKQKFKNLEAF 701 (801)
Q Consensus 625 ~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v~~~~~~~~~~~~~---~~~~~~~~~~d~~~l~~~~~~~~~~~~v 701 (801)
+|+|+++|++..+.|+++|.+++...+.++++++++++........... ....++.++..++.++++++.... ..+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 79 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSR-KGV 79 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCC
Confidence 4899999999999999999999999999999999986532110000000 000011122334566666555422 223
Q ss_pred EEEEEEe--cChhHHHHHHhcccCCcEEEEccCCCchhhcccccCCCCCccc-ccccccccCCCCcc--eeEEEEEe
Q 003702 702 KYEERWI--KNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELG-PVGSLLISPDFSTS--ASVLVVQQ 773 (801)
Q Consensus 702 ~~~e~~v--~~~~e~~~~l~~~~~~DLvivGr~~~~~~~~gl~~w~e~~eLG-~igd~las~d~~~~--~SvLvvqq 773 (801)
.+....+ ++..+++....+..+.||++||+|+ .+|+.++ -+| .+.+.+... ++ .+|||||.
T Consensus 80 ~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g----~~~l~~~----~~gssva~~Vi~~---a~~~c~Vlvv~~ 145 (146)
T cd01989 80 QCEDVVLEDDDVAKAIVEYVADHGITKLVMGASS----DNHFSMK----FKKSDVASSVLKE---APDFCTVYVVSK 145 (146)
T ss_pred eEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccC----CCceeec----ccCCchhHHHHhc---CCCCceEEEEeC
Confidence 3433333 3566665444443448999999999 6666644 356 588888775 56 89999985
No 39
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.53 E-value=6.4e-07 Score=83.83 Aligned_cols=131 Identities=13% Similarity=0.087 Sum_probs=83.3
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEeccCCCCcccccccCCCCCCcccccHHHHHHHHHhhccC-CCceEE
Q 003702 625 VITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVKQKFKN-LEAFKY 703 (801)
Q Consensus 625 ~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~-~~~v~~ 703 (801)
||+||.+|+++++.+|++|.+||+..+.+++++++.+..... . ....+...+..++.++.+++.... +..+.+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 74 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHS-S-----PSQLEVNVQRARKLLRQAERIAASLGVPVHT 74 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCC-C-----cchhHHHHHHHHHHHHHHHHHhhhcCCceEE
Confidence 589999999999999999999999999999999998653321 0 000111222334555555554322 223333
Q ss_pred EEEEecChhHHHHHHhcccCCcEEEEccCCCchhhcccccCCCCCcccccccccccCCCCcceeEEEEE
Q 003702 704 EERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVVQ 772 (801)
Q Consensus 704 ~e~~v~~~~e~~~~l~~~~~~DLvivGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvq 772 (801)
.....++..+.+....+-.++||+++|+++ .+++. ..-+|..-+-+... ++.+||||+
T Consensus 75 ~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~----~~~~~----~~~lGs~~~~v~~~---~~~pvlvv~ 132 (132)
T cd01988 75 IIRIDHDIASGILRTAKERQADLIIMGWHG----STSLR----DRLFGGVIDQVLES---APCDVAVVK 132 (132)
T ss_pred EEEecCCHHHHHHHHHHhcCCCEEEEecCC----CCCcc----ceecCchHHHHHhc---CCCCEEEeC
Confidence 333234554444433333349999999998 33332 23578887777764 778999984
No 40
>PRK11175 universal stress protein UspE; Provisional
Probab=98.51 E-value=3.3e-07 Score=99.34 Aligned_cols=143 Identities=15% Similarity=0.082 Sum_probs=87.0
Q ss_pred ceEEEEeccCCCh-------hHHHHHHHHhcCCCCCC-CcEEEEEEeeeccCCchhhHHHhhhccCCCCccCCCCCCccc
Q 003702 451 LRIFACFHTASNV-------PTMINLIEASRGTEKKE-GLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCD 522 (801)
Q Consensus 451 lrILv~v~~~~~~-------~~li~Ll~~~~~~~~~~-p~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (801)
-+||++++..+.. ..+++.+..++.. . ...++++|+.+........-.... ....+. ....+
T Consensus 153 ~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~---~~~a~l~ll~v~~~~~~~~~~~~~~~---~~~~~~----~~~~~ 222 (305)
T PRK11175 153 GKILVAVNVASEEPYHDALNEKLVEEAIDLAEQ---LNHAEVHLVNAYPVTPINIAIELPEF---DPSVYN----DAIRG 222 (305)
T ss_pred CeEEEEeCCCCCccchhHHHHHHHHHHHHHHhh---CcCCceEEEEEecCcchhcccccccc---chhhHH----HHHHH
Confidence 5899999976543 3567776666532 3 457999999875432110000000 000000 01112
Q ss_pred hHHHHHHHHhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCc
Q 003702 523 QVVVAFEAFRQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCS 602 (801)
Q Consensus 523 ~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcs 602 (801)
+..+.++.+.+..++........ ..+..+.|++.|++.++||||||.|++....+ ..+|++.++|++++|||
T Consensus 223 ~~~~~l~~~~~~~~~~~~~~~v~--~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~------~llGS~a~~v~~~~~~p 294 (305)
T PRK11175 223 QHLLAMKALRQKFGIDEEQTHVE--EGLPEEVIPDLAEHLDAELVILGTVGRTGLSA------AFLGNTAEHVIDHLNCD 294 (305)
T ss_pred HHHHHHHHHHHHhCCChhheeec--cCCHHHHHHHHHHHhCCCEEEECCCccCCCcc------eeecchHHHHHhcCCCC
Confidence 23334444444333332222212 24788999999999999999999997654433 45899999999999999
Q ss_pred eEEEecCCC
Q 003702 603 VGILVDRGL 611 (801)
Q Consensus 603 Vgilvdrg~ 611 (801)
|.++.++|+
T Consensus 295 VLvv~~~~~ 303 (305)
T PRK11175 295 LLAIKPDGY 303 (305)
T ss_pred EEEEcCCCC
Confidence 999877765
No 41
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.48 E-value=1.3e-06 Score=80.68 Aligned_cols=130 Identities=18% Similarity=0.210 Sum_probs=88.5
Q ss_pred eEEEEeccCCChhHHHHHHHHhcCCCCCCCcEEEEEEeeeccCCchhhHHHhhhccCCCCccCCCCCCccchHHHHHHHH
Q 003702 452 RIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFEAF 531 (801)
Q Consensus 452 rILv~v~~~~~~~~li~Ll~~~~~~~~~~p~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 531 (801)
+||+|+++.+....+++.+..+... ....++++|+.+..+........+. ....++.++.+...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~---~~~~i~~l~v~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~ 64 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARR---LGAELVLLHVVDPPPSSAAELAELL-------------EEEARALLEALREA 64 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHh---cCCEEEEEEEecCCCCcchhHHHHH-------------HHHHHHHHHHHHHH
Confidence 5899999998999999988888743 5678999999875544321000000 01123333333333
Q ss_pred hhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEE
Q 003702 532 RQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGIL 606 (801)
Q Consensus 532 ~~~~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgil 606 (801)
....++.++.....+ +..++|++.+++.++|++|+|++++.... +..+++..+++++++||||.++
T Consensus 65 ~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~~------~~~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 65 LAEAGVKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGLR------RLLLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred HhcCCCceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCccc------eeeeccHHHHHHhCCCCCEEeC
Confidence 223456666655544 34899999999999999999998764332 2347888999999999999763
No 42
>PRK15005 universal stress protein F; Provisional
Probab=98.45 E-value=9.6e-07 Score=84.27 Aligned_cols=136 Identities=14% Similarity=0.112 Sum_probs=82.9
Q ss_pred ceEEEEeccCCcC--hHHHHHHHHHHhhCCCeEEEEEEeccCCCCcccccccCCCC---CCcccccHHHHHHHHHhhccC
Q 003702 623 SSVITVLFFGGND--DQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDA---ESTGESADEIFLAEVKQKFKN 697 (801)
Q Consensus 623 ~~~i~v~f~Gg~d--dreaL~~a~rma~~~~v~ltvv~~v~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~~~~~ 697 (801)
.++|++|++|++. .+.|+++|.++|+..+.++++++++++.............+ .+..++..++.++++.++...
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKL 81 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCC
Confidence 3589999999998 47999999999999999999999996422110000000000 011122233456666555432
Q ss_pred CCceEEE-EEEecChhHHHHHHhcccCCcEEEEccCCCchhhcccccCCCCCcccccccccccCCCCcceeEEEE
Q 003702 698 LEAFKYE-ERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVV 771 (801)
Q Consensus 698 ~~~v~~~-e~~v~~~~e~~~~l~~~~~~DLvivGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvv 771 (801)
. .+.+. ....+++.+.+....+-.++||+|+|+++ .|+.+| =+|...+-+... ++.+||||
T Consensus 82 ~-~~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~-----~~~~~~----llGS~a~~vl~~---a~cpVlvV 143 (144)
T PRK15005 82 P-TDRVHVHVEEGSPKDRILELAKKIPADMIIIASHR-----PDITTY----LLGSNAAAVVRH---AECSVLVV 143 (144)
T ss_pred C-CCceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCCC-----CCchhe----eecchHHHHHHh---CCCCEEEe
Confidence 2 12222 22234555555444333349999999875 245443 368888887775 78899998
No 43
>PRK09982 universal stress protein UspD; Provisional
Probab=98.42 E-value=6.7e-07 Score=85.40 Aligned_cols=134 Identities=14% Similarity=0.106 Sum_probs=81.9
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEeccCCCCcccccc-cCCCC-CCcccccHHHHHHHHHhhccCCCc
Q 003702 623 SSVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEA-DTNDA-ESTGESADEIFLAEVKQKFKNLEA 700 (801)
Q Consensus 623 ~~~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v~~~~~~~~~~~-~~~~~-~~~~~~~d~~~l~~~~~~~~~~~~ 700 (801)
.++|+++.+|+++.+.|++.|.++|+..++++++++++++......... ....+ .+..++..++.++++++.... ..
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 81 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQW-PK 81 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcCC-Cc
Confidence 4689999999999999999999999999999999999864221100000 00000 011122233456666655422 23
Q ss_pred eEEEEEEecChhHHHHHHhcccCCcEEEEccCCCchhhcccccCCCCCcccccccccccCCCCcceeEEEEE
Q 003702 701 FKYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVVQ 772 (801)
Q Consensus 701 v~~~e~~v~~~~e~~~~l~~~~~~DLvivGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvq 772 (801)
+.+.- ..+++.+++....+..++||+|||+| .+|+++| +| +.+-... .++.+||||-
T Consensus 82 ~~~~v-~~G~p~~~I~~~A~~~~aDLIVmG~~-----~~~~~~~-----~~-va~~V~~---~s~~pVLvv~ 138 (142)
T PRK09982 82 TKLRI-ERGEMPETLLEIMQKEQCDLLVCGHH-----HSFINRL-----MP-AYRGMIN---KMSADLLIVP 138 (142)
T ss_pred ceEEE-EecCHHHHHHHHHHHcCCCEEEEeCC-----hhHHHHH-----HH-HHHHHHh---cCCCCEEEec
Confidence 33222 34677777766555555999999975 3556555 24 3333333 2677888873
No 44
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.36 E-value=7.5e-07 Score=83.35 Aligned_cols=131 Identities=17% Similarity=0.197 Sum_probs=86.5
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEeccCCCCcccccccCCCCCCcccccHHHHHHHHH-------hhc
Q 003702 623 SSVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVK-------QKF 695 (801)
Q Consensus 623 ~~~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-------~~~ 695 (801)
.+||+++++|+++++.|+++|.++|++.+.+++++++.+....... ................. ...
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSF-------SAAEDEESEEEAEEEEQARQAEAEEAE 74 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeecccccccc-------ccccccccccccchhhhhhhHHHHHHh
Confidence 3699999999999999999999999999999999999975432200 00000000000000000 001
Q ss_pred cCCCceEEEEEEecChhHHHHHHhcccCCcEEEEccCCCchhhcccccCCCCCcccccccccccCCCCcceeEEEE
Q 003702 696 KNLEAFKYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVV 771 (801)
Q Consensus 696 ~~~~~v~~~e~~v~~~~e~~~~l~~~~~~DLvivGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvv 771 (801)
.......+.....++..+.+....+..++||+++|+++ .+++.+| -+|.+.+-++.. +..+||||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~----~~~~~~~----~~gs~~~~l~~~---~~~pVlvv 139 (140)
T PF00582_consen 75 AEGGIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRG----RSGLERL----LFGSVAEKLLRH---APCPVLVV 139 (140)
T ss_dssp HHTTSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSS----TTSTTTS----SSHHHHHHHHHH---TSSEEEEE
T ss_pred hhccceeEEEEEeeccchhhhhccccccceeEEEeccC----CCCccCC----CcCCHHHHHHHc---CCCCEEEe
Confidence 11234455565677777776665555559999999998 5555554 378888888885 77899987
No 45
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.31 E-value=2.3e-06 Score=79.35 Aligned_cols=123 Identities=16% Similarity=0.095 Sum_probs=81.7
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEeccCCCCcccccccCCCCCCcccccHHHHHHHHHhhccCCCceEEE
Q 003702 625 VITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVKQKFKNLEAFKYE 704 (801)
Q Consensus 625 ~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~ 704 (801)
||+++++|++.+++++++|.++|++.+.+|+++++.++.... ..+..++.++++++.... ..+.+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~-------------~~~~~~~~l~~~~~~~~~-~~~~~~ 66 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNR-------------LSEAERRRLAEALRLAEE-LGAEVV 66 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCcccc-------------CCHHHHHHHHHHHHHHHH-cCCEEE
Confidence 589999999999999999999999999999999998653211 111123455555544322 223343
Q ss_pred EEEecChhHHHHHHhcccCCcEEEEccCCCchhhcccccCCCCCcccccccccccCCCCcceeEEEE
Q 003702 705 ERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVV 771 (801)
Q Consensus 705 e~~v~~~~e~~~~l~~~~~~DLvivGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvv 771 (801)
.....+..+.+....+..+.|++++|+++ .+++.++ -+|...+-+...- .+..|||+
T Consensus 67 ~~~~~~~~~~I~~~~~~~~~dllviG~~~----~~~~~~~----~~Gs~~~~v~~~a--~~~~v~v~ 123 (124)
T cd01987 67 TLPGDDVAEAIVEFAREHNVTQIVVGKSR----RSRWREL----FRGSLVDRLLRRA--GNIDVHIV 123 (124)
T ss_pred EEeCCcHHHHHHHHHHHcCCCEEEeCCCC----CchHHHH----hcccHHHHHHHhC--CCCeEEEe
Confidence 33334555555444333349999999998 4445443 4688777777752 36788886
No 46
>PRK15456 universal stress protein UspG; Provisional
Probab=98.28 E-value=4.4e-06 Score=79.64 Aligned_cols=136 Identities=17% Similarity=0.123 Sum_probs=83.1
Q ss_pred ceEEEEeccCCc--ChHHHHHHHHHHhhCCCeEEEEEEeccCCCCcccccccCC-C-CCCcccccHHHHHHHHHhhccCC
Q 003702 623 SSVITVLFFGGN--DDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTN-D-AESTGESADEIFLAEVKQKFKNL 698 (801)
Q Consensus 623 ~~~i~v~f~Gg~--ddreaL~~a~rma~~~~v~ltvv~~v~~~~~~~~~~~~~~-~-~~~~~~~~d~~~l~~~~~~~~~~ 698 (801)
.+||++|++|++ .++.|+++|.++|+.. .++++++++++............ . ..+..++..++.++++.++....
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTID 80 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 368999999994 7999999999999875 59999999865321100000000 0 00111233335566666554221
Q ss_pred -CceEEEEEEecChhHHHHHHhcccCCcEEEEccCCCchhhcccccCCCCCcccccccccccCCCCcceeEEEEE
Q 003702 699 -EAFKYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVVQ 772 (801)
Q Consensus 699 -~~v~~~e~~v~~~~e~~~~l~~~~~~DLvivGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvq 772 (801)
.++...- ..+++.+.+....+..+.||+|||+|+ . |+.++ =+|...+-++.. ++++||||.
T Consensus 81 ~~~v~~~v-~~G~~~~~I~~~a~~~~~DLIVmG~~g----~-~~~~~----llGS~a~~v~~~---a~~pVLvV~ 142 (142)
T PRK15456 81 PSRIKQHV-RFGSVRDEVNELAEELGADVVVIGSRN----P-SISTH----LLGSNASSVIRH---ANLPVLVVR 142 (142)
T ss_pred CcceEEEE-cCCChHHHHHHHHhhcCCCEEEEcCCC----C-Cccce----ecCccHHHHHHc---CCCCEEEeC
Confidence 2333222 234555555444333349999999998 3 23332 379988888886 788999983
No 47
>PRK10116 universal stress protein UspC; Provisional
Probab=98.19 E-value=3.5e-06 Score=80.21 Aligned_cols=135 Identities=16% Similarity=0.128 Sum_probs=76.9
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEeccCCCCcccccccCCCC-CCcccccHHHHHHHHHhhccCCCce
Q 003702 623 SSVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDA-ESTGESADEIFLAEVKQKFKNLEAF 701 (801)
Q Consensus 623 ~~~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v~~~~~~~~~~~~~~~~-~~~~~~~d~~~l~~~~~~~~~~~~v 701 (801)
.++|+++++++++.+.||++|.++|+..+++|+++++++..............+ .+..++..+++++++..+. +-..
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~ 80 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA--DYPI 80 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCe
Confidence 469999999999999999999999999999999999985421100000000000 0011111223444444332 1111
Q ss_pred EEEEEEecChhHHHHHHhcccCCcEEEEccCCCchhhcccccCCCCCcccccccccccCCCCcceeEEEEE
Q 003702 702 KYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVVQ 772 (801)
Q Consensus 702 ~~~e~~v~~~~e~~~~l~~~~~~DLvivGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvq 772 (801)
.-.....++..+.+....+..++||+|+|+++ .++++.| +...+-++. .++.+||||-
T Consensus 81 ~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~----~~~~~~~------~s~a~~v~~---~~~~pVLvv~ 138 (142)
T PRK10116 81 EKTFIAYGELSEHILEVCRKHHFDLVICGNHN----HSFFSRA------SCSAKRVIA---SSEVDVLLVP 138 (142)
T ss_pred EEEEEecCCHHHHHHHHHHHhCCCEEEEcCCc----chHHHHH------HHHHHHHHh---cCCCCEEEEe
Confidence 11122234455544333222249999999998 5555544 223444444 3788999984
No 48
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.13 E-value=6.8e-06 Score=78.47 Aligned_cols=134 Identities=9% Similarity=-0.028 Sum_probs=77.7
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEeccCCCCcccccccCCCCCCccc---ccHHHHHHHHHhhccCCC
Q 003702 623 SSVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGE---SADEIFLAEVKQKFKNLE 699 (801)
Q Consensus 623 ~~~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v~~~~~~~~~~~~~~~~~~~~~---~~d~~~l~~~~~~~~~~~ 699 (801)
.+||+++.+|++.++.||++|..+|+..+++++++++.++...... .......++.++ +...+.++++..+. +.
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~ 79 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYT-GLIDVNLGDMQKRISEETHHALTELSTNA--GY 79 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhh-hhhhcchHHHHHHHHHHHHHHHHHHHHhC--CC
Confidence 4699999999999999999999999999999999998532111000 000000001111 11113344433221 11
Q ss_pred ceEEEEEEecChhHHHHHHhcccCCcEEEEccCCCchhhcccccCCCCCcccccccccccCCCCcceeEEEEEe
Q 003702 700 AFKYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVVQQ 773 (801)
Q Consensus 700 ~v~~~e~~v~~~~e~~~~l~~~~~~DLvivGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvqq 773 (801)
.+.......+++.+.+....+-.++||+|+|+|+ . ++. .||...+-+... ++.+||||..
T Consensus 80 ~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~----~-~~~------~lgSva~~v~~~---a~~pVLvv~~ 139 (144)
T PRK15118 80 PITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ----D-FWS------KLMSSARQLINT---VHVDMLIVPL 139 (144)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc----c-HHH------HHHHHHHHHHhh---CCCCEEEecC
Confidence 2221222245666655444433449999999997 1 211 156555555554 7889999975
No 49
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.00 E-value=5.4e-05 Score=72.39 Aligned_cols=143 Identities=14% Similarity=0.197 Sum_probs=86.4
Q ss_pred ceEEEEec-cCCChhHHHHHHHHhcCCCCCCCcEEEEEEeeeccCCchhhHHHhhhccCCCCccCCCCCCccchHHHHHH
Q 003702 451 LRIFACFH-TASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFE 529 (801)
Q Consensus 451 lrILv~v~-~~~~~~~li~Ll~~~~~~~~~~p~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 529 (801)
.+++++++ +.+........+...... ....++++++++..+............. ............++..+..+
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 80 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKR---LGAPLILLVVIDPLEPTALVSVALADAP--IPLSEEELEEEAEELLAEAK 80 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHh---cCCeEEEEEEecccccccccccccccch--hhhhHHHHHHHHHHHHHHHH
Confidence 47888888 777777776666665533 4445667777765543322110000000 00000000022345555555
Q ss_pred HHhhccceE-EEEeEEecCCCCh-HHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEEe
Q 003702 530 AFRQLSRVF-IRPMTAISAMHGM-HEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILV 607 (801)
Q Consensus 530 ~~~~~~~v~-v~~~~~vs~~~~m-~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgilv 607 (801)
...++..+. +....... +. .+.|+..|.+.++|+|+||.+++++.++ ..+|++.++|++++||||.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~g---~~~~~~i~~~a~~~~adliV~G~~g~~~l~~------~llGsvs~~v~~~~~~pVlvv~ 151 (154)
T COG0589 81 ALAEAAGVPVVETEVVEG---SPSAEEILELAEEEDADLIVVGSRGRSGLSR------LLLGSVAEKVLRHAPCPVLVVR 151 (154)
T ss_pred HHHHHcCCCeeEEEEecC---CCcHHHHHHHHHHhCCCEEEECCCCCccccc------eeeehhHHHHHhcCCCCEEEEc
Confidence 544443333 23433332 44 6999999999999999999997765544 3589999999999999999873
No 50
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.96 E-value=0.0018 Score=68.45 Aligned_cols=255 Identities=16% Similarity=0.116 Sum_probs=141.4
Q ss_pred HHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhccHHHHHHHHH
Q 003702 100 LLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILA 179 (801)
Q Consensus 100 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~ 179 (801)
+..++|-.|-++|.+...+..||...+-+.-+++..+++..+..++... .......+.+-++++.+.-..=..+..
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~----g~~Gls~laiiaa~~~~Ng~ly~al~~ 126 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAE----GIFGLSGLAIVAAMSNSNGGLYAALMG 126 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcc----cccchHHHHHHHHHhcCcHHHHHHHHH
Confidence 4568899999999999888888888888888888888888777776532 112244566666777777777778888
Q ss_pred hcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 003702 180 ELKLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPVK 259 (801)
Q Consensus 180 el~ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~ 259 (801)
|+| -++|.|-..+ ..++|. + +..++.. .. .++. +.|
T Consensus 127 ~yG-~~~d~gA~~~--~sl~~G------------------P---f~tm~aL---ga----------~gLA-~ip------ 162 (312)
T PRK12460 127 EFG-DERDVGAISI--LSLNDG------------------P---FFTMLAL---GA----------AGLA-NIP------ 162 (312)
T ss_pred HcC-CHhhhhHHhh--hhhccC------------------c---HHHHHHH---HH----------HHHh-cCC------
Confidence 888 3555553221 112221 1 1111110 00 0111 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhh
Q 003702 260 ELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQS 339 (801)
Q Consensus 260 e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~ 339 (801)
.. .+ -+.+=+++.|+++.|- .+.+.+.+++-. .+.+|+|-+..|.++|++.+... .
T Consensus 163 -~~---~l---------------v~lilpILiGmilGNl---d~~~~~~l~~Gi-~f~I~f~~f~LG~~lnl~~I~~~-G 218 (312)
T PRK12460 163 -IM---AL---------------VAALLPLVLGMILGNL---DPDMRKFLTKGG-PLLIPFFAFALGAGINLSMLLQA-G 218 (312)
T ss_pred -hH---HH---------------HHHHHHHHHHHHHhcc---chhhHHHHhccc-eEeHHHHHHHhcCCeeHHHHHHh-C
Confidence 00 00 0123345666677652 223344444443 45889999999999999888642 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH--HHHhhhhHHHHHHHHhhcccCcCChhHHHHHHHHHHHHHHh
Q 003702 340 WGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALG--FLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFI 417 (801)
Q Consensus 340 ~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lg--l~l~~kG~~~l~l~~~~~~~~~i~~~~~~~~v~~~lv~t~i 417 (801)
+.-+ ++.+..++.-...+++..+++|.+.+.++.+| .+-+.-|-..++-. ....+..- +.-+..|.++++.|.+
T Consensus 219 ~~GI-lL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAa--dP~~~~~~-~~Ataqvaa~vivTai 294 (312)
T PRK12460 219 LAGI-LLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAA--DPSLAPVA-AAATAQVAASVIVTAI 294 (312)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHh--chhHHHHH-HHHHHHHHHHHHHHHH
Confidence 3222 22233334445556666688898888877777 43333332222222 11112221 3344445555555555
Q ss_pred HHH-HHHHHccccc
Q 003702 418 TTP-LVMAVYKPNQ 430 (801)
Q Consensus 418 ~~p-l~~~l~~~~~ 430 (801)
..| +..|++|+.+
T Consensus 295 l~P~~t~~~~k~~~ 308 (312)
T PRK12460 295 LTPLLTSWVAKKEA 308 (312)
T ss_pred HHHHHHHHHHHHhc
Confidence 555 5566665433
No 51
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.88 E-value=7.9e-05 Score=68.66 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=77.7
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEeccCCCCcccccccCCCCCCcccccHHHHHHHHHhhcc-CCCceEE
Q 003702 625 VITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVKQKFK-NLEAFKY 703 (801)
Q Consensus 625 ~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~~~v~~ 703 (801)
+|++++.+++..+.++..|.++|...+.+++++++.++...... ...+.+.+..++.+++++.... .+.++.+
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 74 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAA------ELAELLEEEARALLEALREALAEAGVKVET 74 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcch------hHHHHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 58999999999999999999999999999999999865332100 0011122334567777776542 1223333
Q ss_pred EEEEecChhHHHHHHhcccCCcEEEEccCCCchhhcccccCCCCCcccccccccccCCCCcceeEEEE
Q 003702 704 EERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVV 771 (801)
Q Consensus 704 ~e~~v~~~~e~~~~l~~~~~~DLvivGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvv 771 (801)
.-. .++..+.+....+-.++|++++|+++ ..++.+| -.|.+.+-|... ++.+||+|
T Consensus 75 ~~~-~~~~~~~i~~~~~~~~~dlvvig~~~----~~~~~~~----~~~~~~~~ll~~---~~~pvliv 130 (130)
T cd00293 75 VVL-EGDPAEAILEAAEELGADLIVMGSRG----RSGLRRL----LLGSVAERVLRH---APCPVLVV 130 (130)
T ss_pred EEe-cCCCHHHHHHHHHHcCCCEEEEcCCC----CCcccee----eeccHHHHHHhC---CCCCEEeC
Confidence 322 22222333222222338999999987 2222221 356777766654 55666654
No 52
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.82 E-value=0.0045 Score=65.14 Aligned_cols=171 Identities=19% Similarity=0.218 Sum_probs=105.8
Q ss_pred HHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCchhHHHHHHHHHhhccHHHHHHH
Q 003702 99 GLLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATV-SKGVDQAPFLIFMGVAFSITAFPVLARI 177 (801)
Q Consensus 99 gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~-~~~~~~~~~~l~lg~~ls~Ts~~vv~~i 177 (801)
-+..++|-.|-++|.+...+..||...+-+.-+++..+++..+..++...- ..+.......+.+-++++.+....=..+
T Consensus 50 iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL 129 (314)
T PF03812_consen 50 IIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLAL 129 (314)
T ss_pred HHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHH
Confidence 355688999999999999999999998988888888888888777775421 0011122456667777777887888888
Q ss_pred HHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 003702 178 LAELKLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEP 257 (801)
Q Consensus 178 L~el~ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~ 257 (801)
..|++ -+++.|-.. ...++|.=.+.++.+.. ++..
T Consensus 130 ~~~yG-d~~D~gA~~--i~sl~~GPf~tMl~LG~----sG~a-------------------------------------- 164 (314)
T PF03812_consen 130 MGQYG-DEEDVGAFS--ILSLNDGPFFTMLALGA----SGLA-------------------------------------- 164 (314)
T ss_pred HHHhC-CHHHhHHHH--HHHhhhhHHHHHHHHhh----cccc--------------------------------------
Confidence 88888 345554322 22233322222211100 0000
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccch
Q 003702 258 VKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQG 336 (801)
Q Consensus 258 ~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~ 336 (801)
+..+ .-+=+.+=+++.|+++.| +.+++.+-+.+-. ..++|+|-...|..+|+..+..
T Consensus 165 --~ip~----------------~~lv~~llP~iiG~iLGN---LD~~~r~fl~~~~-~~lIPF~~f~lGa~inl~~i~~ 221 (314)
T PF03812_consen 165 --NIPW----------------MSLVAALLPIIIGMILGN---LDPDFRKFLAPGV-PILIPFFGFALGAGINLSNIIK 221 (314)
T ss_pred --CCCH----------------HHHHHHHHHHHHHHHHhc---CCHHHHHHHhcCC-CeeeehhhhhhcCCCCHHHHHH
Confidence 0000 000122346777888876 3444555555543 7889999999999999988765
No 53
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.73 E-value=0.1 Score=57.97 Aligned_cols=291 Identities=18% Similarity=0.172 Sum_probs=154.5
Q ss_pred CCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHH
Q 003702 54 RQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIALGGISL 133 (801)
Q Consensus 54 ~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~i 133 (801)
.+|.++--++.|+++.. +|.++ ++...+..+.+.+..+-+-+++.=++.|+++++|.++|.+.. +..-.+
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~-------~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~-F~~~~~ 93 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLID-------SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLA-FLIGAV 93 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcC-------CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHH-HHHHHH
Confidence 36888888888888885 33331 123445677888888888788888899999999999887643 333344
Q ss_pred HHHHHHHHHHHHHhhh-cCCCCchhHHHHHHHHHhhc------cHHHHHHHHHhcCccCChhHHHHHHHHHHHH-HHHHH
Q 003702 134 PFALGIGTSFALRATV-SKGVDQAPFLIFMGVAFSIT------AFPVLARILAELKLLTTDVGRMAMSAAAVND-VAAWI 205 (801)
Q Consensus 134 p~~~~~~~~~~l~~~~-~~~~~~~~~~l~lg~~ls~T------s~~vv~~iL~el~ll~s~~g~l~ls~a~i~D-~~~i~ 205 (801)
..++|..+++.+.... ++ +..-++.+++-| -+..+... ++. + .-..+.++.-| ++.-+
T Consensus 94 g~viG~~va~~l~~~~l~~------~~wk~ag~l~gsyiGGs~N~~Av~~a---l~~-~----~~~~~a~~aaDnv~~~~ 159 (378)
T PF05684_consen 94 GTVIGAVVAFLLFGGFLGP------EGWKIAGMLAGSYIGGSVNFVAVAEA---LGV-S----DSLFAAALAADNVVMAL 159 (378)
T ss_pred HHHHHHHHHHHHHhhcccc------hHHHHHHHHHhcccCchhHHHHHHHH---HCC-C----HHHHHHHHHHHHHHHHH
Confidence 4555666665554432 11 112222222221 12223222 331 1 12334444444 33333
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------Hhhc--CCCCCcchHHHHHHHHH
Q 003702 206 LLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVTPIFKWM--------------EKRC--PDGEPVKELYVCVTLSI 269 (801)
Q Consensus 206 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i--------------~~~~--~~~~~~~e~~~~~~l~~ 269 (801)
.+.+...+.... +..-+|. .+.. .++++.. ..+...+..
T Consensus 160 ~~~~l~~l~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~la~ 214 (378)
T PF05684_consen 160 WFAFLLALPPFA------------------------RKFDRWTKADTSSIEALEEEIEAEEAEWARKPIS-QDLAFLLAV 214 (378)
T ss_pred HHHHHHHHhhhh------------------------HHhhhccCCCccccchhhhhhhhhhhccccCCcH-hHHHHHHHH
Confidence 333333322200 0000000 0000 0001111 223344444
Q ss_pred HHHHHHHHHHhch-------------hHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccch
Q 003702 270 VLLSGFVTDSIGI-------------HALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQG 336 (801)
Q Consensus 270 ~l~~~~~ae~~g~-------------~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~ 336 (801)
.+....+++.++- -.++-....|++.. .+|..+.+ .--+.+. .+++=+||+.+|++.|+..+.+
T Consensus 215 a~~v~~~s~~la~~l~~~~~~~~~~~~~il~~tt~~l~~~-~~~~~~~l-~g~~~lg-~~lly~ffa~IGa~a~i~~l~~ 291 (378)
T PF05684_consen 215 AFAVVALSHALAAWLPPLFAGISSSTWLILTVTTLGLATS-FPPFRKLL-RGASELG-TFLLYLFFAVIGASADISELLD 291 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHh-ccchhhcC-CchHHHH-HHHHHHHHHHHccccCHHHHHH
Confidence 4443333332221 12333445566554 35555444 3345554 6777789999999999998875
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCC
Q 003702 337 LQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLN 400 (801)
Q Consensus 337 ~~~~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~ 400 (801)
.. ..+++.++.+..-.+..+..++++|+|+.+...-+- -|.-|-.+......+++..+..
T Consensus 292 -ap--~~~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~vAS~-AnIGGpaTA~a~A~a~~~~Lv~ 351 (378)
T PF05684_consen 292 -AP--SLFLFGFIILAIHLLLMLILGKLFKIDLFELLVASN-ANIGGPATAPAVAAAKGPSLVP 351 (378)
T ss_pred -hH--HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhh-cccCCcchHHHHHHhcCCccHH
Confidence 22 233444555667788888999999999988776666 5666766655555555544433
No 54
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.61 E-value=0.00025 Score=77.67 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=68.9
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhhCC--CeEEEEEEeccCCCCcccccccCCCCCCcccccHHHHHHHHHhhccC--
Q 003702 622 VSSVITVLFFGGNDDQEALAYGARMAEHP--GISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVKQKFKN-- 697 (801)
Q Consensus 622 ~~~~i~v~f~Gg~ddreaL~~a~rma~~~--~v~ltvv~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~-- 697 (801)
..+||+||++|++..+.|+++|..+|+.. +++++++++++..... ...+...+..++.+++.++....
T Consensus 4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~--------~~~~~~~~~~eelle~~~~~~~~~l 75 (357)
T PRK12652 4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVD--------PEGQDELAAAEELLERVEVWATEDL 75 (357)
T ss_pred ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccc--------cchhHHHHHHHHHHHHHHHHHHHhh
Confidence 45799999999999999999999999884 6999999999753221 01111112233445544443221
Q ss_pred ---CCceEEEEEEe---------cChhHHHHHHhcccCCcEEEEccCC
Q 003702 698 ---LEAFKYEERWI---------KNTSETVDVLGEFNKCHLFLVGRMP 733 (801)
Q Consensus 698 ---~~~v~~~e~~v---------~~~~e~~~~l~~~~~~DLvivGr~~ 733 (801)
...+.+...++ ++.++++....+..++||||||..-
T Consensus 76 ~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~ 123 (357)
T PRK12652 76 GDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEY 123 (357)
T ss_pred hcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCC
Confidence 12354444443 5777777666655559999999985
No 55
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.44 E-value=0.068 Score=58.03 Aligned_cols=156 Identities=12% Similarity=0.202 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHhhcC-CCCCcch----H--------------------H-HHHHHHHHHHHHHHHHHhc-----hh
Q 003702 235 IGCVFIVTPIFKWMEKRCP-DGEPVKE----L--------------------Y-VCVTLSIVLLSGFVTDSIG-----IH 283 (801)
Q Consensus 235 ~~~~~v~~~~~~~i~~~~~-~~~~~~e----~--------------------~-~~~~l~~~l~~~~~ae~~g-----~~ 283 (801)
+..+.+..|+.+|.++|.. +..+.++ . . +.++...+...+++.+.++ +.
T Consensus 170 v~GgliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~i~i~~~vG~~i~~~l~~~~~~lP 249 (404)
T COG0786 170 VAGGLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIETLAIIAICLAVGKIINQLLKSLGLALP 249 (404)
T ss_pred HHhHhcCcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3445677899999987751 1111111 0 1 2233333333445666554 57
Q ss_pred HHHHHHHHHhhccCCCCc--hHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003702 284 ALFGAFITGVLVPKEGPF--AGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAM 361 (801)
Q Consensus 284 ~~lgaf~aGl~l~~~~~~--~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~ 361 (801)
...++++.|.++.+--+. ..++.++.-+...++-+-+|.++.=|++.+..+.+ -..++++++.+-..+--+.+.+..
T Consensus 250 ~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~-l~lpl~viL~vQ~i~m~lfa~fvt 328 (404)
T COG0786 250 LFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELAD-LALPLLVILAVQTIVMALFAIFVT 328 (404)
T ss_pred HHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999862211 11133333344447778888888888888887765 233334444444444455666777
Q ss_pred HHHcCCChHHHHHHHHHHh-hhhHHHHHHHH
Q 003702 362 SLACRIPFKEALALGFLMN-TKGLVELIVLN 391 (801)
Q Consensus 362 ~~~~~~~~~~~~~lgl~l~-~kG~~~l~l~~ 391 (801)
.+..|-++..+...+.-++ .-|...-++++
T Consensus 329 fr~mG~~YdAaV~~~G~~G~gLGATPtAian 359 (404)
T COG0786 329 FRLMGKNYDAAVLAAGHCGFGLGATPTAIAN 359 (404)
T ss_pred HHHhCcchhHHHHhcccccCccCCcHHHHHh
Confidence 7888888877766433222 12334444544
No 56
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.40 E-value=0.13 Score=57.15 Aligned_cols=91 Identities=12% Similarity=0.247 Sum_probs=52.5
Q ss_pred chhHHHHHHHHHhhccCC------CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHH
Q 003702 281 GIHALFGAFITGVLVPKE------GPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGK 354 (801)
Q Consensus 281 g~~~~lgaf~aGl~l~~~------~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K 354 (801)
.+....++++.|+++.+- ....++..+++. ++.+-+|.+..=+.+++..+.+ ...+.++++++..++.=
T Consensus 246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~----~~sL~~fl~~almsl~l~~l~~-~a~Plliil~~q~i~~~ 320 (368)
T PF03616_consen 246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRIS----GISLDLFLAMALMSLKLWVLAD-YALPLLIILAVQTILMV 320 (368)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHH----HHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 356789999999998751 113333444444 5555555555567778877775 23333333333444444
Q ss_pred HHHHHHHHHHcCCChHHHHHHHH
Q 003702 355 IVGTVAMSLACRIPFKEALALGF 377 (801)
Q Consensus 355 ~i~~~l~~~~~~~~~~~~~~lgl 377 (801)
+...++..+.++.++ |+..++.
T Consensus 321 ~f~~fv~fr~~gkdy-daavm~~ 342 (368)
T PF03616_consen 321 LFAYFVTFRVMGKDY-DAAVMSA 342 (368)
T ss_pred HHHHHHhhhhhCCCh-hHHHHhh
Confidence 455566677778776 5555544
No 57
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.35 E-value=0.012 Score=61.65 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=60.7
Q ss_pred HHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCchhHHHHHHHHHhhccHHHHHHHH
Q 003702 100 LLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATV-SKGVDQAPFLIFMGVAFSITAFPVLARIL 178 (801)
Q Consensus 100 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~-~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL 178 (801)
+..++|-.|-++|.+...+..||...+-+.-+++..+++..+..++...- ..+.......+.+-++++.|.-..=..+.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~ 130 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM 130 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence 45688999999999998888888887877788888888887777776321 00111123455566666666666667777
Q ss_pred HhcCccCChhH
Q 003702 179 AELKLLTTDVG 189 (801)
Q Consensus 179 ~el~ll~s~~g 189 (801)
.|+| -++|.|
T Consensus 131 ~qyG-d~~D~g 140 (314)
T TIGR00793 131 QQYG-TKEEAG 140 (314)
T ss_pred HHcC-CHhhhh
Confidence 7777 355555
No 58
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.21 E-value=0.49 Score=51.59 Aligned_cols=84 Identities=15% Similarity=0.175 Sum_probs=55.0
Q ss_pred HcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcH-HHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHH
Q 003702 50 LRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSL-TVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIAL 128 (801)
Q Consensus 50 l~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~-~~l~~l~~~gl~~llF~~Gle~d~~~l~~~~~~~~~ia~ 128 (801)
+++.+++..+--++.|+++|+......+ +..- ... ..-+.+-++|.+ +.|.+++++++.+.+.+.+.+..
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~---~~~~--~Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~ 96 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRD---EEKK--RGVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADT 96 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccch---hhcc--chHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHH
Confidence 3556899999889999999974321111 1110 111 123456666666 56999999999999998887777
Q ss_pred HHHHHHHHHHHHHH
Q 003702 129 GGISLPFALGIGTS 142 (801)
Q Consensus 129 ~~~~ip~~~~~~~~ 142 (801)
..+...+.+++.+.
T Consensus 97 ~~v~~~~~~~~~~g 110 (335)
T TIGR00698 97 LILTSTFFLTVFLG 110 (335)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655444
No 59
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=97.18 E-value=0.19 Score=53.70 Aligned_cols=178 Identities=17% Similarity=0.210 Sum_probs=91.7
Q ss_pred hHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHH-
Q 003702 58 VIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFA- 136 (801)
Q Consensus 58 ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~- 136 (801)
+.-.+++|+.+|-..-+... ..+ .-+....+.--.+|+++.|+-.=+++|.+++++..|..=.+. .+..+.++
T Consensus 20 v~l~i~~Gi~lG~~~p~~~~-~l~----~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~-lsL~~Nwii 93 (342)
T COG0798 20 VFLAIAIGILLGVHFPGLAQ-LLG----KLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLI-LSLFVNWII 93 (342)
T ss_pred HHHHHHHHHHHHhcccchhh-hcc----cceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHH-HHHHHHHHH
Confidence 44557788888844333111 000 011223455567888888888889999999987665432221 22222222
Q ss_pred ---HHHHHHHHHHhhhcCCCCch-hHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003702 137 ---LGIGTSFALRATVSKGVDQA-PFLIFMGVAFSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAVA 212 (801)
Q Consensus 137 ---~~~~~~~~l~~~~~~~~~~~-~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~ 212 (801)
+.+++++++... .+.. ...+++|.+= +||...+-. ++.+.+ -..++..-.+||++.+++++....
T Consensus 94 ~P~lm~~la~~fl~~----~pey~~GlILlglAp-C~aMVivw~-----~La~Gd-~~~tlv~Va~n~l~qiv~y~~~~~ 162 (342)
T COG0798 94 GPLLMFALAWFFLPD----EPEYRAGLILLGLAP-CIAMVIVWS-----GLAKGD-RELTLVLVAFNSLLQIVLYAPLGK 162 (342)
T ss_pred HHHHHHHHHHHHhCC----CHHHHHHHHHHHhhh-hHHHHHHHH-----hhccCc-HhhhhHHHHHHHHHHHHHHHHHHH
Confidence 233344444321 1111 1222233222 233333333 322222 245556677999999988865554
Q ss_pred HhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003702 213 LSGSGRSPLVSLWVLLCGCGFVIGCVFIVTPIFKWMEKRC 252 (801)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~ 252 (801)
+.-+..+...+++.++..+.+.+.+-++.+..-+++..|.
T Consensus 163 ~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~ 202 (342)
T COG0798 163 FFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKK 202 (342)
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3322222223456666666666666666666666666664
No 60
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=96.96 E-value=0.0075 Score=57.39 Aligned_cols=141 Identities=23% Similarity=0.206 Sum_probs=88.4
Q ss_pred ceEEEEecc-CCcChHHHHHHHHHHhhCCCeEEEEEEeccCCCCcccccccCCCC-----CCcccccHHHHHHHHHhhcc
Q 003702 623 SSVITVLFF-GGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDA-----ESTGESADEIFLAEVKQKFK 696 (801)
Q Consensus 623 ~~~i~v~f~-Gg~ddreaL~~a~rma~~~~v~ltvv~~v~~~~~~~~~~~~~~~~-----~~~~~~~d~~~l~~~~~~~~ 696 (801)
..+++++++ |.+..+.|++.|...+...+..++++.+++............... ....++..++.+++.++...
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAE 84 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 468999999 999999999999999999999999888775433210000000000 01123334556666665543
Q ss_pred CCC-ceEEEEEEecCh-hHHHHHHhcccCCcEEEEccCCCchhhcccccCCCCCcccccccccccCCCCcceeEEEEEec
Q 003702 697 NLE-AFKYEERWIKNT-SETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVVQQY 774 (801)
Q Consensus 697 ~~~-~v~~~e~~v~~~-~e~~~~l~~~~~~DLvivGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvqq~ 774 (801)
..+ ...-.+...+++ .+.+.......++||+++|.++ .+++.+ --||-.-+.++.. ++.+|||+...
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g----~~~l~~----~llGsvs~~v~~~---~~~pVlvv~~~ 153 (154)
T COG0589 85 AAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRG----RSGLSR----LLLGSVAEKVLRH---APCPVLVVRSE 153 (154)
T ss_pred HcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCC----Cccccc----eeeehhHHHHHhc---CCCCEEEEccC
Confidence 322 111233334555 4555545544459999999987 444443 3478888888875 78899998753
No 61
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.93 E-value=0.56 Score=50.94 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhc
Q 003702 93 DTLANLGLLFFLFLVGLEMDPKSIRRAGKKA---LSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSIT 169 (801)
Q Consensus 93 ~~l~~~gl~~llF~~Gle~d~~~l~~~~~~~---~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~T 169 (801)
+....+++..++|..|+.++.+++++..|+. ...-...+++.-++++.+...+.... ...+..|......
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~-------~~~l~~Gl~~~~~ 102 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFL-------PPELALGLLILAC 102 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccC-------CHHHHHHHHHHhh
Confidence 4667788888899999999999998755443 32222222222233444444443211 1224444433222
Q ss_pred cHHHHHH--HHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003702 170 AFPVLAR--ILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAVALSG 215 (801)
Q Consensus 170 s~~vv~~--iL~el~ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~ 215 (801)
-|..+.. .++.. .+.+ -..++..+.++.++++++.-+...+..
T Consensus 103 lPtTv~S~v~~T~~--AgGN-~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 103 LPTTVSSSVVLTRL--AGGN-VALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred CCchhhHHHHHHHH--cCCC-HHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 2211111 12222 1222 245566677777777777655554433
No 62
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=96.89 E-value=0.68 Score=51.80 Aligned_cols=93 Identities=11% Similarity=0.137 Sum_probs=54.1
Q ss_pred chhHHHHHHHHHhhccCCCCc--hHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHH-HHH
Q 003702 281 GIHALFGAFITGVLVPKEGPF--AGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGK-IVG 357 (801)
Q Consensus 281 g~~~~lgaf~aGl~l~~~~~~--~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K-~i~ 357 (801)
.+....++++.|+++.+-.+. ..++.++.-+...++.+-+|.+..=+.+++..+.+ .+..+++++++.++.- +..
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~--~a~Plliil~~q~i~~~l~~ 321 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELAD--LAGPIALILLVQVMFMALYA 321 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999762111 11122333333446667777777778888888875 3333333333333333 344
Q ss_pred HHHHHHHcCCChHHHHHHH
Q 003702 358 TVAMSLACRIPFKEALALG 376 (801)
Q Consensus 358 ~~l~~~~~~~~~~~~~~lg 376 (801)
.|+..+..+.+ .|+-.++
T Consensus 322 ~fv~fr~mg~~-ydaaV~~ 339 (398)
T TIGR00210 322 IFVTFRLMGKD-YDAAVLC 339 (398)
T ss_pred HHHhHHhccch-HHHHHHh
Confidence 45666667766 6666543
No 63
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=96.89 E-value=0.76 Score=49.28 Aligned_cols=149 Identities=15% Similarity=0.095 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHh
Q 003702 91 VLDTLANLGLLFFLFLVGLEMDPKSIRRAGK---KALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFS 167 (801)
Q Consensus 91 ~l~~l~~~gl~~llF~~Gle~d~~~l~~~~~---~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls 167 (801)
.++..-.+++.++||..|+.+..+++++..| ........++++--++++++.+.+. + ..-+..|..+-
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~--l-------~~~l~~Gl~ll 105 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP--L-------PPELAVGLLLL 105 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC--C-------CHHHHHhHHhe
Confidence 3444558889999999999999999886544 4443334444443344555554443 1 23455555553
Q ss_pred hccHHHHHHH-HHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHHHHHHHHHHH
Q 003702 168 ITAFPVLARI-LAELKLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGR---SPLVSLWVLLCGCGFVIGCVFIVTP 243 (801)
Q Consensus 168 ~Ts~~vv~~i-L~el~ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~ 243 (801)
.+.|..+... ++.+ .+.+ --+.++.+.++-+++.++.-+...+..++. ..+..++.++..+..-++.+.++|+
T Consensus 106 ~~~Pggv~S~~~t~l--AkGn-ValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~ 182 (319)
T COG0385 106 GCCPGGVASNAMTYL--AKGN-VALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRP 182 (319)
T ss_pred eeCCCchhHHHHHHH--hcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332222221 1111 1222 245566677777887777655554433321 2234456666666666677777787
Q ss_pred HHHHHHhh
Q 003702 244 IFKWMEKR 251 (801)
Q Consensus 244 ~~~~i~~~ 251 (801)
......++
T Consensus 183 ~~~~~~~~ 190 (319)
T COG0385 183 LLPKWVER 190 (319)
T ss_pred HHHHHHHH
Confidence 76655554
No 64
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=96.81 E-value=0.81 Score=50.79 Aligned_cols=253 Identities=15% Similarity=0.180 Sum_probs=132.0
Q ss_pred hccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHH-----hhccHHHHHHHHHhcCc
Q 003702 109 LEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAF-----SITAFPVLARILAELKL 183 (801)
Q Consensus 109 le~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~l-----s~Ts~~vv~~iL~el~l 183 (801)
+.||.+.+.|...|-+...+.+.+..++++..++.+++.... ...+.+..-. ..-+.|...-.-+-++.
T Consensus 109 Lgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~------~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~ 182 (414)
T PF03390_consen 109 LGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFK------DAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQ 182 (414)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH------HHHHHHHhhhcCCCccccHhHHHHHHHHHhCC
Confidence 489999999999998888888888888888888877765321 1112222111 01111111101111232
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCc-----------------hhHHHHHHHHHHHHHHHHHHH
Q 003702 184 LTTDVGRMAMSAAAVNDVAAWILLALAVALSGSG-----RSP-----------------LVSLWVLLCGCGFVIGCVFIV 241 (801)
Q Consensus 184 l~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~-----~~~-----------------~~~~~~~~~~~~~~~~~~~v~ 241 (801)
-..++-..++.+.++..+++++.-.+.-.+.... ++. .... .-...-.+..+.+|.+
T Consensus 183 ~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~-~~~g~Gllla~~~y~~ 261 (414)
T PF03390_consen 183 DAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDF-SDMGAGLLLACSFYIL 261 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCH-HHHHHHHHHHHHHHHH
Confidence 3344445555666666666666555443332110 000 0000 0111111222333333
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccC---CCCchHHHHHHHHHHHHHHHH
Q 003702 242 TPIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPK---EGPFAGALVEKVEDLVSGLLL 318 (801)
Q Consensus 242 ~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~---~~~~~~~l~~kl~~~~~~~~~ 318 (801)
+.+...+. ++|+..-..++=.++.- -|+.-++=.++...+...-+.
T Consensus 262 G~ll~~~i-------------------------------~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt 310 (414)
T PF03390_consen 262 GVLLSKLI-------------------------------GIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLT 310 (414)
T ss_pred HHHHHHhc-------------------------------CCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence 33333332 33322222222111110 112223333444455555566
Q ss_pred HHHHHHhccc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH-HHHHHHHHhhhh-HHHHHHHHhhcc
Q 003702 319 PLYFVSSGLK-TNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKE-ALALGFLMNTKG-LVELIVLNIGKD 395 (801)
Q Consensus 319 plfF~~~G~~-idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~-~~~lgl~l~~kG-~~~l~l~~~~~~ 395 (801)
+-..+-+|+. +|+..+....++..+ ++++..+++-.++.++.+++.|+-.-| ++..|+.++.+| .-+++++..+..
T Consensus 311 ~~lLvgiGv~~~~l~~l~~a~t~~~v-v~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~R 389 (414)
T PF03390_consen 311 WPLLVGIGVAYTDLNDLIAAFTPQYV-VIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANR 389 (414)
T ss_pred HHHHHHHHhhhCcHHHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhh
Confidence 6677788888 999888765555543 445566677788899999999985555 556676776665 457777776666
Q ss_pred cCcCC
Q 003702 396 RKVLN 400 (801)
Q Consensus 396 ~~~i~ 400 (801)
.+++.
T Consensus 390 M~Lmp 394 (414)
T PF03390_consen 390 MELMP 394 (414)
T ss_pred ccccc
Confidence 66554
No 65
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=96.65 E-value=0.013 Score=64.42 Aligned_cols=108 Identities=12% Similarity=0.042 Sum_probs=69.7
Q ss_pred ceEEEEeccCCChhHHHHHHHHhcCCCCCCCcEEEEEEeeeccCCchhhHHHhhhccCCCCccCCCCCCccchHHHHHHH
Q 003702 451 LRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFEA 530 (801)
Q Consensus 451 lrILv~v~~~~~~~~li~Ll~~~~~~~~~~p~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 530 (801)
.|||+|+++.++....++-+-.++.. .....+++++|+++....... .... ....+++++..+.
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~-~g~~AeL~lL~Vv~~~~~~~~---~~~~------------~~~~eelle~~~~ 69 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEE-AAETPTVHLVAAASGRAVDPE---GQDE------------LAAAEELLERVEV 69 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHh-cCCCCEEEEEEEecCcccccc---hhHH------------HHHHHHHHHHHHH
Confidence 58999999999999988877777632 112578999999984321110 0000 0112344444444
Q ss_pred Hhhc------cceEEEEeEEec-----CCCChHHHHHHHHHhcCccEEEecCccc
Q 003702 531 FRQL------SRVFIRPMTAIS-----AMHGMHEDICSSAERKRAAMIILPFHKH 574 (801)
Q Consensus 531 ~~~~------~~v~v~~~~~vs-----~~~~m~~~I~~~A~~~~a~lIil~~h~~ 574 (801)
..++ .++.++..+... ...+.++.|++.|++.++|+|||+-.-+
T Consensus 70 ~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~ 124 (357)
T PRK12652 70 WATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYN 124 (357)
T ss_pred HHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCC
Confidence 3222 467777666542 1258999999999999999999996433
No 66
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.63 E-value=1.2 Score=48.07 Aligned_cols=84 Identities=21% Similarity=0.258 Sum_probs=56.3
Q ss_pred ccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHH-HHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHH
Q 003702 52 PLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTV-LDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIALGG 130 (801)
Q Consensus 52 ~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~-l~~l~~~gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~ 130 (801)
...++..+--++.|+++|+..++..+. + . +..+. -+.+-++|.+ +.|.++++.++.+.+.+.+.+....
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~----~-~-~Gi~~~~k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~~ 92 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPAR----F-K-PGIKFSSKKLLRLGIV----LLGFRLSFSDILALGWKGLLIIIIV 92 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHH----H-H-hHHHHHHHHHHHHHHH----HHCccccHHHHHHhCccHHHHHHHH
Confidence 457888888899999999633332211 0 0 11222 2356666665 5699999999999999888888777
Q ss_pred HHHHHHHHHHHH-HHH
Q 003702 131 ISLPFALGIGTS-FAL 145 (801)
Q Consensus 131 ~~ip~~~~~~~~-~~l 145 (801)
+...+.+++.++ ..+
T Consensus 93 v~~~~~~~~~lg~r~~ 108 (305)
T PF03601_consen 93 VILTFLLTYWLGRRLF 108 (305)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 777777666555 444
No 67
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=96.60 E-value=0.26 Score=53.09 Aligned_cols=85 Identities=19% Similarity=0.338 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhccc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH-HHHHHHhhhhH-HHHHHH
Q 003702 314 SGLLLPLYFVSSGLK-TNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEAL-ALGFLMNTKGL-VELIVL 390 (801)
Q Consensus 314 ~~~~~plfF~~~G~~-idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~-~lgl~l~~kG~-~~l~l~ 390 (801)
..+.-|+. +.+|.. +|+..+.+..+|..+ ++.+...++-..+.++.+++.|+-+-|+- .-|+.|+.+|. -+++++
T Consensus 326 k~~t~~Lm-~giGv~ytdl~ev~~alt~~~v-ii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaVL 403 (438)
T COG3493 326 KNLTWPLM-AGIGVAYTDLNEVAAALTWQNV-IIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAVL 403 (438)
T ss_pred HhhHHHHH-HhhhhccccHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHHh
Confidence 34444543 455666 888877765566544 34455566778889999999998555554 55688887775 467777
Q ss_pred HhhcccCcCC
Q 003702 391 NIGKDRKVLN 400 (801)
Q Consensus 391 ~~~~~~~~i~ 400 (801)
..+-..++++
T Consensus 404 sAa~RM~Lmp 413 (438)
T COG3493 404 SAADRMELMP 413 (438)
T ss_pred hhcchhcccc
Confidence 6666656554
No 68
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=96.36 E-value=2 Score=46.60 Aligned_cols=300 Identities=16% Similarity=0.189 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCh--hHH-HHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHh
Q 003702 32 AILQICLVVLLTRLLAFVLRPLRQPR--VIA-EIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVG 108 (801)
Q Consensus 32 ~l~~i~lil~~~~~~~~ll~~l~~P~--ii~-~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~G 108 (801)
...|.++.+.++...++++..+++|. ..| -+++|++.+-.... .-.| ..+..+|...+=-.+|
T Consensus 7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~-------l~~P-------~~l~~~~q~ilG~~ig 72 (352)
T COG3180 7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLT-------LPLP-------RGLFKAGQVILGIMIG 72 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc-------ccCC-------hHHHHHHHHHHHHHHh
Confidence 36778888999999999999998764 456 66777777621111 1112 4455666666667889
Q ss_pred hccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhccHHHHHHHHHhcCccCChh
Q 003702 109 LEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDV 188 (801)
Q Consensus 109 le~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~ 188 (801)
..+..+.+... ++-+.+.....+++...+.+.+|++.+... ++. ..+++-. ++-.......+-+|.| .|.+.
T Consensus 73 ~~~t~s~l~~l-~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~--~~~-~Ta~~gs---~PGgas~m~~iA~d~g-Ad~~~ 144 (352)
T COG3180 73 ASLTPSVLDTL-KSNWPIVLVVLLLTLLSSILLGWLLKRFSI--LPG-NTAFLGS---SPGGASAMVSIAQDYG-ADLRL 144 (352)
T ss_pred hhcCHHHHHHH-HHcccHHHHHHHHHHHHHHHHHHHHHHhcC--CCc-chhhHhc---CCchHHHHHHHHHHhC-CChhH
Confidence 99988876533 333344445555566666666666655431 111 1122211 1111112222224555 34433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC------CCcchHH
Q 003702 189 GRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDG------EPVKELY 262 (801)
Q Consensus 189 g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~------~~~~e~~ 262 (801)
--+..+.=++- +...+-++.+.... .++..+. .+.....
T Consensus 145 VAl~Q~lRvl~---------------------------------Vvl~vplv~~~~~~--~~a~~~~~~~i~~~~~~~~~ 189 (352)
T COG3180 145 VALMQYLRVLF---------------------------------VVLLAPLVSRLFVG--DGANGSGTPEIWLPPVDWLI 189 (352)
T ss_pred HHHHHHHHHHH---------------------------------HHHHHHHHHHHhcC--CCCCCCCCccccCchhhHHH
Confidence 22222211111 11111111111110 0111000 0011111
Q ss_pred HHHHHHHHHHHHHHHHHhch--hHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhh-h
Q 003702 263 VCVTLSIVLLSGFVTDSIGI--HALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQ-S 339 (801)
Q Consensus 263 ~~~~l~~~l~~~~~ae~~g~--~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~-~ 339 (801)
+.+.+...++.+.+...+++ ...+|+++.|..+.-.....-++-+-+. .+-.-+.-..+|.++|-..+.... .
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl~----~va~~~iG~~IG~~f~~~~l~~~~r~ 265 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWLL----AVAQALIGALIGSRFDRSILREAKRL 265 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHHH----HHHHHHHHHHHcccccHHHHHHhHhh
Confidence 44445555555566665555 4567777777776532211111111111 222334566789998866554322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcc
Q 003702 340 WGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKD 395 (801)
Q Consensus 340 ~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~ 395 (801)
....++.++..++.-....++..++.+.++.++.. ...|.|.-+++....+.+
T Consensus 266 ~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L---a~sPGGl~~ma~~A~~l~ 318 (352)
T COG3180 266 LPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL---ATSPGGLDTMAAIAAALG 318 (352)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HcCCCcHHHHHHHHHHcC
Confidence 22233444455555566677778888888887653 346888777766655554
No 69
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=96.34 E-value=1.7 Score=47.58 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhh-HHHHHHHH
Q 003702 349 TACFGKIVGTVAMSLACRIPFKEALALGFLMNTKG-LVELIVLN 391 (801)
Q Consensus 349 ~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG-~~~l~l~~ 391 (801)
+..+.-+...+..++..|++.+|+..+.+--+.|- ..++.++.
T Consensus 254 l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~ 297 (328)
T TIGR00832 254 IYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAI 297 (328)
T ss_pred HHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHH
Confidence 34444566667778889999999888877655554 33444444
No 70
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.27 E-value=0.28 Score=53.17 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=37.0
Q ss_pred HHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003702 101 LFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALR 146 (801)
Q Consensus 101 ~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~ 146 (801)
..++|-.|-.+|++...+..||...+.+.-+.+..+++..+..++.
T Consensus 54 ~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g 99 (326)
T PRK05274 54 AVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIG 99 (326)
T ss_pred HHHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcch
Confidence 3688999999999998888888888877777777777776666554
No 71
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.18 E-value=0.15 Score=60.74 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchH-HHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhH
Q 003702 262 YVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAG-ALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSW 340 (801)
Q Consensus 262 ~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~-~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~ 340 (801)
.+.+.++.+.+...++..+|+++++|=.++|+++.-.. ++. .-.+.++.+. ++-+.++...+|+.+|+..+....
T Consensus 9 ~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~-lg~i~~~~~i~~la-elGvv~LlF~iGLEl~~~~l~~~~-- 84 (621)
T PRK03562 9 QALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWG-LRLVTDVESILHFA-EFGVVLMLFVIGLELDPQRLWKLR-- 84 (621)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCccc-ccCCCCHHHHHHHH-HHHHHHHHHHHHhCcCHHHHHHHH--
Confidence 34566677777888899999999999999999985210 110 0123344443 666777888899999998876421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhh
Q 003702 341 GFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKG 383 (801)
Q Consensus 341 ~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG 383 (801)
..++.+-..-++.-++..+..+++++++|..++.+|..+..-.
T Consensus 85 ~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS 127 (621)
T PRK03562 85 RSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS 127 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 1111111111222233344556778999999999988765443
No 72
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.02 E-value=0.23 Score=52.85 Aligned_cols=130 Identities=18% Similarity=0.262 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchH-HHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHH
Q 003702 269 IVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAG-ALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVI 347 (801)
Q Consensus 269 ~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~-~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i 347 (801)
.....+.+++.++++.+++-.++|+++.... ++. .-.+.++.+. .+-..++....|+++|++.+... +.....+.
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l~-~igl~~llF~~Gl~~d~~~l~~~--~~~~~~~~ 78 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHLA-EFGVILLMFLIGLELDLERLWKL--RKAAFGVG 78 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHH--HHHHHHHH
Confidence 3455678899999999999999999986310 110 0112344443 56666778889999999887642 22222222
Q ss_pred HHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCChhHH
Q 003702 348 VTACFGK-IVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTF 404 (801)
Q Consensus 348 ~~~~~~K-~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~ 404 (801)
...++.- ++.++..+++.+.++.+++.+|..+.+-. .-++.....|.+..+.+.-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~g 134 (273)
T TIGR00932 79 VLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPFG 134 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChHH
Confidence 2333333 44445566778999999999999877543 2333444555565554443
No 73
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=95.94 E-value=3.3 Score=45.12 Aligned_cols=128 Identities=16% Similarity=0.117 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHhch--hHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhh-h
Q 003702 263 VCVTLSIVLLSGFVTDSIGI--HALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQ-S 339 (801)
Q Consensus 263 ~~~~l~~~l~~~~~ae~~g~--~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~-~ 339 (801)
+.+.+..+++.+++++.+++ ..++|+++.+.++.-.......+-+.+. .+..-+.-..+|.+++...+.... .
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~----~~aqv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLV----NAAQVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHHHHccccHHHHHHHHHH
Confidence 44555666777788887776 5788888887776532111111112222 222223456788998876665322 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccC
Q 003702 340 WGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRK 397 (801)
Q Consensus 340 ~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~ 397 (801)
++..++..+..+..-.+..++..+++++++.+++ +.+.|-|.-++.+.....+.+
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~---La~aPGGl~eM~l~A~~l~~d 287 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTAL---LATAPGGLAEMALIALALGAD 287 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH---HHhCCccHHHHHHHHHHcCCC
Confidence 3334444555556667778888888999887755 345788888888776665544
No 74
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.86 E-value=0.25 Score=48.36 Aligned_cols=114 Identities=25% Similarity=0.307 Sum_probs=75.0
Q ss_pred cccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhH---HHhhhhhHHHHH
Q 003702 51 RPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKS---IRRAGKKALSIA 127 (801)
Q Consensus 51 ~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~---l~~~~~~~~~ia 127 (801)
+++++-...|-+++|+++|-. +...+.. . .....+.+.++|+.+|++.+|++--++- +|+.+.+...++
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~~--~~~~~~~---~---~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~ 90 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGAL--GRTGPIF---L---PISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLG 90 (169)
T ss_pred cceeccccHHHHHHHHHHHHh--hhccCCC---C---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 556666777899999999942 2211111 1 2345678999999999999999988764 455666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHH-HHhhccHHHHHHHHHh
Q 003702 128 LGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGV-AFSITAFPVLARILAE 180 (801)
Q Consensus 128 ~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~e 180 (801)
+.-.++|.++++.+.+++.+. ......|. +-+.|++|.+....+.
T Consensus 91 ~~i~~~~~~~~~~~~~~~~~l--------~~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 91 VIITLVPLLIALVIGRYLFKL--------NPGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHcCC--------CHHHHHHHHHccccCcHHHHHHHHh
Confidence 777777777777766643321 12233333 3367887877776544
No 75
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.83 E-value=0.098 Score=52.26 Aligned_cols=129 Identities=24% Similarity=0.421 Sum_probs=84.0
Q ss_pred HHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChh-----HHHhhhhhHHHHHHHHHHH
Q 003702 59 IAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPK-----SIRRAGKKALSIALGGISL 133 (801)
Q Consensus 59 i~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~-----~l~~~~~~~~~ia~~~~~i 133 (801)
++.+++|+++|-..... ....+...+..+.+++|.+|+++--+ .+++.+++++.+.+..++-
T Consensus 2 l~~li~Gi~lG~~~~~~-------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG 68 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP-------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG 68 (191)
T ss_pred eeeHHHHHHHHHHhccc-------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34567888888432211 11236678889999999999988544 5666778999999988888
Q ss_pred HHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 003702 134 PFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAV 211 (801)
Q Consensus 134 p~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~i~ll~~~~ 211 (801)
+++.+.+++.++.... .+++.+++-+. =+.....+++|++ +.++|.++.-+=++-+++++++.-++.
T Consensus 69 Sllgg~l~~~ll~~~~-------~~~lav~sG~G--wYSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~~ 135 (191)
T PF03956_consen 69 SLLGGLLASLLLGLSL-------KESLAVASGFG--WYSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIPLLA 135 (191)
T ss_pred HHHHHHHHHHHhcCCH-------HHHHHHHccCc--HHHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777764321 34444444331 1112222344443 678898888888888877776655443
No 76
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.82 E-value=0.36 Score=57.42 Aligned_cols=108 Identities=12% Similarity=0.050 Sum_probs=64.6
Q ss_pred HHHHHHHcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhH
Q 003702 44 RLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKA 123 (801)
Q Consensus 44 ~~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l~~~~~~~ 123 (801)
....++.+.+|+...+|-.++|++++.+-. . .+-...++.+..+-+.+|...+|+++|++.+..++...
T Consensus 226 l~~a~l~~~~Gls~~LGAFlaGl~l~~s~~------~-----~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~i 294 (601)
T PRK03659 226 LGSALFMDALGLSMALGTFIAGVLLAESEY------R-----HELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWV 294 (601)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHhcCCch------H-----HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHH
Confidence 344456677888888999999999885211 1 11223466677788888889999999999988776544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhc
Q 003702 124 LSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSIT 169 (801)
Q Consensus 124 ~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~T 169 (801)
+.+.+..++.=++.+++.+.+++. .+..++.+|..++..
T Consensus 295 l~~~~~~l~~K~~~~~~~~~~~g~-------~~~~al~~g~~L~~~ 333 (601)
T PRK03659 295 LISVVVLVAVKGLVLYLLARLYGL-------RSSERMQFAGVLSQG 333 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHhcc
Confidence 333222222223333333333221 124566677666543
No 77
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.61 E-value=0.4 Score=56.61 Aligned_cols=133 Identities=17% Similarity=0.291 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC-CchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHH
Q 003702 265 VTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEG-PFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFL 343 (801)
Q Consensus 265 ~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~-~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~ 343 (801)
.++..+++++.++..++++.++|=.++|+++.... ..-+. .+.++.+ .++-+-++...+|+++|+..+..... ..
T Consensus 13 ~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~~~--~~ 88 (558)
T PRK10669 13 GGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAVKS--IA 88 (558)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHHhh--HH
Confidence 44666677778888899999999999999985311 11000 1223444 35555566778899999987753211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCChhH
Q 003702 344 VLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQT 403 (801)
Q Consensus 344 ~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~ 403 (801)
....+...+.=++.++...+.+++++.+++.+|..++.-.. .++.....+.|.++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~ 146 (558)
T PRK10669 89 IPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQR 146 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcc
Confidence 11111112222333444556778999999999987666332 34455566667666543
No 78
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=95.39 E-value=1.2 Score=48.47 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=77.3
Q ss_pred chhHHHHHHHHHhhccCCCCchHHHHHHHHHH---HHHHHHHHHHHHhccc-ccccccchhhhHHHHHHHHHHHHHHHHH
Q 003702 281 GIHALFGAFITGVLVPKEGPFAGALVEKVEDL---VSGLLLPLYFVSSGLK-TNITTIQGLQSWGFLVLVIVTACFGKIV 356 (801)
Q Consensus 281 g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~---~~~~~~plfF~~~G~~-idl~~l~~~~~~~~~~~~i~~~~~~K~i 356 (801)
++|+..-..++|.++..-+-..+++.++...+ ...-+.+..++-+|+. +|++.+.+..+|. .+++++..+++=.+
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~-~vviiv~~Vlg~ii 281 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQ-FVVICLSVVVAMIL 281 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchh-HhhhHHHHHHHHHH
Confidence 56888888888888875554556666654433 2333444445555766 7887776533444 34455666777888
Q ss_pred HHHHHHHHcCCChHH-HHHHHHHHhhhh-HHHHHHHHhhcccCcCC
Q 003702 357 GTVAMSLACRIPFKE-ALALGFLMNTKG-LVELIVLNIGKDRKVLN 400 (801)
Q Consensus 357 ~~~l~~~~~~~~~~~-~~~lgl~l~~kG-~~~l~l~~~~~~~~~i~ 400 (801)
++++.+++.|+-+-| ++..|+.++.+| .-+++++..+...+++.
T Consensus 282 ~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 282 GGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 899999999985555 555577776666 45677776666666554
No 79
>PRK10490 sensor protein KdpD; Provisional
Probab=95.11 E-value=0.11 Score=64.63 Aligned_cols=124 Identities=10% Similarity=0.063 Sum_probs=84.0
Q ss_pred CCceEEEEeccCCChhHHHHHHHHhcCCCCCCCcEEEEEEeeeccCCchhhHHHhhhccCCCCccCCCCCCccchHHHHH
Q 003702 449 SELRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAF 528 (801)
Q Consensus 449 ~elrILv~v~~~~~~~~li~Ll~~~~~~~~~~p~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 528 (801)
..-|||||+.+..+...+|+-...++.. .....+++|+.....+..+ .+..+++.+.+
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~---~~a~~~~l~V~~~~~~~~~-------------------~~~~~~l~~~~ 306 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAAR---LGSVWHAVYVETPRLHRLP-------------------EKKRRAILSAL 306 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHh---cCCCEEEEEEecCCcCcCC-------------------HHHHHHHHHHH
Confidence 4568999999999999999877777643 4556899997642111100 02234555555
Q ss_pred HHHhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCC-CceEEEe
Q 003702 529 EAFRQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHAS-CSVGILV 607 (801)
Q Consensus 529 ~~~~~~~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~ap-csVgilv 607 (801)
+ ++++-+..+... +.+++++.|.++|++++++-||||-+++.+. ..-+++.+++++.+| -.|-|+-
T Consensus 307 ~-lA~~lGa~~~~~----~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--------~~~~s~~~~l~r~~~~idi~iv~ 373 (895)
T PRK10490 307 R-LAQELGAETATL----SDPAEEKAVLRYAREHNLGKIIIGRRASRRW--------WRRESFADRLARLGPDLDLVIVA 373 (895)
T ss_pred H-HHHHcCCEEEEE----eCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--------ccCCCHHHHHHHhCCCCCEEEEe
Confidence 4 555533333322 2368999999999999999999998765321 113478999999999 6777764
No 80
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.09 E-value=0.68 Score=52.10 Aligned_cols=137 Identities=14% Similarity=0.195 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccC-CC---CchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchh
Q 003702 262 YVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPK-EG---PFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGL 337 (801)
Q Consensus 262 ~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~-~~---~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~ 337 (801)
.+.+++..+.....+.+.+|+++++|=.++|+++.. +. ...++..+-+..+ =.-++...+|+.+|+..+...
T Consensus 10 ~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~lael----Gvi~LlF~~GLE~~~~~l~~~ 85 (397)
T COG0475 10 QLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAEL----GVVFLLFLIGLEFDLERLKKV 85 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHH----hHHHHHHHHHHCcCHHHHHHh
Confidence 455666777777799999999999999999999975 11 1223333334444 333456679999999888753
Q ss_pred hhHHHHHHHHHHHHHHHHHHH--HHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCChhHHHH
Q 003702 338 QSWGFLVLVIVTACFGKIVGT--VAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAI 406 (801)
Q Consensus 338 ~~~~~~~~~i~~~~~~K~i~~--~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~ 406 (801)
.... ........+..=++.. +... .+++++.+++.+|..+..-.. + +.+....|.|..+++.-..
T Consensus 86 ~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~-~-i~~~iL~e~~~~~~~~g~~ 152 (397)
T COG0475 86 GRSV-GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST-A-IVLKILMELGLLKTREGQL 152 (397)
T ss_pred chhh-hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH-H-HHHHHHHHhccccchHHHH
Confidence 2221 1222222222222222 2222 589999999999887655332 1 2333444555555444333
No 81
>PRK03818 putative transporter; Validated
Probab=95.07 E-value=0.68 Score=54.30 Aligned_cols=126 Identities=17% Similarity=0.298 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHH-HcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChh
Q 003702 36 ICLVVLLTRLLAFV-LRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPK 114 (801)
Q Consensus 36 i~lil~~~~~~~~l-l~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~ 114 (801)
+++.+.+..+++.+ ++.+++- +.|-+++|+++|-..- . +..-. .....+++.++|+.+|+|.+|++.-++
T Consensus 11 l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~~----~-~~~~~---~~~~~~~~~~~gl~lFv~~vGl~~Gp~ 81 (552)
T PRK03818 11 LALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFVS----Q-FGLTL---DSDMLHFIQEFGLILFVYTIGIQVGPG 81 (552)
T ss_pred HHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhcccc----c-cCccc---ChHHHHHHHHHHHHHHHHHHhhcccHH
Confidence 34444444444432 1223333 3788999999995210 0 00001 234567799999999999999999987
Q ss_pred HH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHH-HHhhccHHHHHHHHH
Q 003702 115 SI---RRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGV-AFSITAFPVLARILA 179 (801)
Q Consensus 115 ~l---~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~ 179 (801)
-+ |+.+.+...+++.-.+++.++++.+.+++.. + .....|+ +-+.|++|.+.....
T Consensus 82 f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~G~~aGa~T~tp~l~aa~~ 141 (552)
T PRK03818 82 FFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGI----P-----LPVMLGIFSGAVTNTPALGAGQQ 141 (552)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC----C-----HHHHHHHhhccccccHHHHHHHH
Confidence 55 4555566666766666666666655444332 1 1233333 336778777766554
No 82
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.06 E-value=0.42 Score=56.48 Aligned_cols=118 Identities=15% Similarity=0.193 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchH--HHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHH
Q 003702 264 CVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAG--ALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWG 341 (801)
Q Consensus 264 ~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~--~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~ 341 (801)
.+++++..+++.+++.+|++.+++-.++|+++.....-.- .-.+-.+.+ ..+.+++.....|+++|+..+.. .+.
T Consensus 12 ~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i-~~l~L~~iLF~~Gl~~~~~~l~~--~~~ 88 (562)
T PRK05326 12 ALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLV-GNLALAVILFDGGLRTRWSSFRP--ALG 88 (562)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHH-HHHHHHHHHHcCccCCCHHHHHH--HHH
Confidence 3455555666677888899999999999998864211100 011223333 47888888889999999988864 333
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHhhhhH
Q 003702 342 FLVLVIVTACFGK-IVGTVAMSLACRIPFKEALALGFLMNTKGL 384 (801)
Q Consensus 342 ~~~~~i~~~~~~K-~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~ 384 (801)
....+....++.- .+.++...++++++|.+++.+|..+++-..
T Consensus 89 ~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~ 132 (562)
T PRK05326 89 PALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDA 132 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCch
Confidence 3333323332222 233455566789999999999988766544
No 83
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.05 E-value=0.73 Score=49.67 Aligned_cols=129 Identities=18% Similarity=0.181 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHH----HhchhHHHHHHHHHhhccC-CCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhh
Q 003702 265 VTLSIVLLSGFVTD----SIGIHALFGAFITGVLVPK-EGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQS 339 (801)
Q Consensus 265 ~~l~~~l~~~~~ae----~~g~~~~lgaf~aGl~l~~-~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~ 339 (801)
+.+++.....++++ ..++++.+=|.+.|+++.| -....+.+..-++.. ...++.+=-+..|.++++..+.+ ..
T Consensus 5 l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~-~G 82 (305)
T PF03601_consen 5 LCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILA-LG 82 (305)
T ss_pred HHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHH-hC
Confidence 44445555555555 3577888889999999986 344445554444443 35777888899999999988875 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHhhhhHHHHHHHHhhccc
Q 003702 340 WGFLVLVIVTACFGKIVGTVAMS-LACRIPFKEALALGFLMNTKGLVELIVLNIGKDR 396 (801)
Q Consensus 340 ~~~~~~~i~~~~~~K~i~~~l~~-~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~ 396 (801)
+......++.. ..-+..++..+ +.+|++.+.+..++.+.+.=|.-+++...-..+.
T Consensus 83 ~~~~~~~~~~v-~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a 139 (305)
T PF03601_consen 83 WKGLLIIIIVV-ILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKA 139 (305)
T ss_pred ccHHHHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccC
Confidence 32233333333 33344444444 9999999999999998887777666555444433
No 84
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=95.02 E-value=1.2 Score=44.36 Aligned_cols=107 Identities=18% Similarity=0.264 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhccChhHHHhhhhhHHHHH--H-HHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhcc-HHH
Q 003702 98 LGLLFFLFLVGLEMDPKSIRRAGKKALSIA--L-GGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITA-FPV 173 (801)
Q Consensus 98 ~gl~~llF~~Gle~d~~~l~~~~~~~~~ia--~-~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts-~~v 173 (801)
+.+.+.||..|++++++++++..|+...+. + ..+++.=.+++.+++.+... ...+..|..+...+ -+.
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~--------~~~~~~Gl~l~~~~P~~~ 73 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPL--------SPALALGLLLVAACPGGP 73 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT----------HHHHHHHHHHHHS-B-T
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHhcCCcHH
Confidence 457789999999999999998776654332 2 22222223344444222211 11233333321111 122
Q ss_pred HHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003702 174 LARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAVALSG 215 (801)
Q Consensus 174 v~~iL~el~ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~ 215 (801)
.+...+.+. +.+. .++.+...++.+.+.++.-+...+..
T Consensus 74 ~s~~~t~l~--~Gd~-~ls~~lt~istll~~~~~P~~~~l~~ 112 (187)
T PF01758_consen 74 ASNVFTYLA--GGDV-ALSVSLTLISTLLAPFLMPLLLYLLS 112 (187)
T ss_dssp HHHHHHHHT--T--H-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCc-ccccceeeHHHHHHHHHHHHHHHHHh
Confidence 333444332 3222 25566667777777766655554443
No 85
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.51 E-value=0.48 Score=50.83 Aligned_cols=115 Identities=18% Similarity=0.122 Sum_probs=81.1
Q ss_pred HHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHH
Q 003702 275 FVTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGK 354 (801)
Q Consensus 275 ~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K 354 (801)
...+..|.++..=|.+.|+++.+..+.+.+...-++.. ...++.+=.++.|++++++.+.+ ..+. .+.+.+..+..-
T Consensus 30 ~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~~-~G~~-~v~~~~~~l~~t 106 (334)
T COG2855 30 FFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDIAD-VGGS-GVLIIAITLSST 106 (334)
T ss_pred HHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHHHH-cCcc-HHHHHHHHHHHH
Confidence 34445666788889999999986555555555545544 36677777889999999988875 2332 233444555566
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHh
Q 003702 355 IVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNI 392 (801)
Q Consensus 355 ~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~ 392 (801)
++.+++..+++|++++.++.+|.+-+.=|.-+++...-
T Consensus 107 ~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~p 144 (334)
T COG2855 107 FLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAP 144 (334)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCC
Confidence 77788888899999999999999877777765555443
No 86
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=94.48 E-value=8.2 Score=41.34 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhccChhHHHhhhhh--HHHHHHH-H-HHHHHHHHHHHHHHH
Q 003702 97 NLGLLFFLFLVGLEMDPKSIRRAGKK--ALSIALG-G-ISLPFALGIGTSFAL 145 (801)
Q Consensus 97 ~~gl~~llF~~Gle~d~~~l~~~~~~--~~~ia~~-~-~~ip~~~~~~~~~~l 145 (801)
-..+.+.||..|+.++.+++++..|+ ....+.. . ++.|++. +.++..+
T Consensus 11 ~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~ 62 (286)
T TIGR00841 11 LILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVF 62 (286)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 34488899999999999999987763 3333333 2 3445433 4444443
No 87
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=94.00 E-value=0.39 Score=46.25 Aligned_cols=114 Identities=20% Similarity=0.229 Sum_probs=65.4
Q ss_pred CChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhh----hHHHHHHHH
Q 003702 55 QPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGK----KALSIALGG 130 (801)
Q Consensus 55 ~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l~~~~~----~~~~ia~~~ 130 (801)
+-..-|-+++|+++|- ++...+..-. .| ......+.++|+.+|++.+|++--++-+..-.+ ....++..-
T Consensus 21 LG~~~G~L~vgL~~G~--~~~~~p~~~~-~p---~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v 94 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGH--FGATGPLTWY-IP---FSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALI 94 (154)
T ss_pred ecccHHHHHHHHHHHh--ccccCCccee-cC---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence 3336788999999995 3333221111 12 235677899999999999999998875543322 223344444
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHH-HHhhccHHHHHHHHHhcC
Q 003702 131 ISLPFALGIGTSFALRATVSKGVDQAPFLIFMGV-AFSITAFPVLARILAELK 182 (801)
Q Consensus 131 ~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~el~ 182 (801)
.++|.+++..+..++.+. + .....|+ +-+.|++|.+....+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~---~-----~~~~~G~~aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 95 TVVPTLLVAVALIKLLRI---N-----YALTAGMLAGATTNTPALDAANDTLR 139 (154)
T ss_pred HHHHHHHHHHHHHHHhCC---C-----HHHHHHHHhccccChHHHHHHHHHhc
Confidence 445544444333332211 1 2334443 347788888877655443
No 88
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=93.68 E-value=1.8 Score=53.42 Aligned_cols=45 Identities=7% Similarity=0.070 Sum_probs=34.2
Q ss_pred CCCCCceEEEEeccCCChhHHHHHHHHhcCCCCCCCcEEEEEEeeecc
Q 003702 446 DPNSELRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELS 493 (801)
Q Consensus 446 ~~~~elrILv~v~~~~~~~~li~Ll~~~~~~~~~~p~~v~~lhlvel~ 493 (801)
..+...||.+..-+..+-...+.++..++.. ..+.++++|.+...
T Consensus 626 ~~~~~~~v~~~F~GG~DDREALa~a~rma~~---p~v~lTVirf~~~~ 670 (832)
T PLN03159 626 SNQVSHHVAVLFFGGPDDREALAYAWRMSEH---PGITLTVMRFIPGE 670 (832)
T ss_pred ccccceeEEEEecCCcchHHHHHHHHHHhcC---CCeEEEEEEEEccc
Confidence 3345568999887777788888898888743 57889999998643
No 89
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=93.68 E-value=0.51 Score=55.49 Aligned_cols=90 Identities=14% Similarity=0.255 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHc-----ccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChh
Q 003702 40 VLLTRLLAFVLR-----PLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPK 114 (801)
Q Consensus 40 l~~~~~~~~ll~-----~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~ 114 (801)
++++..+++++- .+++-.+.|-+++|+++|-.... . -+.+.++|+++|+|.+|++.-++
T Consensus 15 lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~---------i-------~~~v~~~gl~lFvy~vG~~~Gp~ 78 (562)
T TIGR03802 15 LFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ---------I-------DPGVKAVFFALFIFAIGYEVGPQ 78 (562)
T ss_pred HHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC---------C-------ChHHHHHHHHHHHHHhhhccCHH
Confidence 333444444444 45567778999999999964321 1 12367799999999999999998
Q ss_pred HHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHH
Q 003702 115 SIRRAGK---KALSIALGGISLPFALGIGTSFAL 145 (801)
Q Consensus 115 ~l~~~~~---~~~~ia~~~~~ip~~~~~~~~~~l 145 (801)
-++.-.| +-..+++.-+++.+.+++++.+++
T Consensus 79 Ff~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~ 112 (562)
T TIGR03802 79 FFASLKKDGLREIILALVFAVSGLITVYALAKIF 112 (562)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7654444 444444443333344444444433
No 90
>PRK04972 putative transporter; Provisional
Probab=93.41 E-value=0.57 Score=54.98 Aligned_cols=118 Identities=27% Similarity=0.372 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHH-HcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhH
Q 003702 37 CLVVLLTRLLAFV-LRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKS 115 (801)
Q Consensus 37 ~lil~~~~~~~~l-l~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~ 115 (801)
++.+.+..+++.+ ++.+++-...|-+++|+++|-.... .| ..+.++|+.+|+|.+|++.-++-
T Consensus 18 f~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~---------~~-------~~~~~~gl~lF~~~vG~~~Gp~F 81 (558)
T PRK04972 18 FVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFS---------IN-------TDALNLGFMLFIFCVGVEAGPNF 81 (558)
T ss_pred HHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCC---------CC-------hHHHHHHHHHHHHHHhhhhhHHH
Confidence 3334444444443 3456677777999999999963321 11 22458999999999999998875
Q ss_pred H---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHH-HHhhccHHHHHHHHH
Q 003702 116 I---RRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGV-AFSITAFPVLARILA 179 (801)
Q Consensus 116 l---~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~ 179 (801)
+ |+.+.+...+++...+++.++++.+.++++. + .....|+ +-+.|++|.+.....
T Consensus 82 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 82 FSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGW----D-----IGLTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC----C-----HHHHHHHhhccccCcHHHHHHHH
Confidence 4 4555566666766666666666665554432 1 1223332 336677777766544
No 91
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=93.32 E-value=0.94 Score=53.31 Aligned_cols=116 Identities=22% Similarity=0.328 Sum_probs=74.9
Q ss_pred ccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhH---HHhhhhhHHHHHH
Q 003702 52 PLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKS---IRRAGKKALSIAL 128 (801)
Q Consensus 52 ~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~---l~~~~~~~~~ia~ 128 (801)
++.+-...|-+++|+++|- ++...+.... .| .....++.++|+.+|++.+|++--++- +++.+.+...+++
T Consensus 412 p~~lg~~~g~l~~gl~~g~--~~~~~~~~~~-~p---~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~ 485 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW--LRSKHPTFGN-IP---SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGI 485 (562)
T ss_pred ceeehhhHHHHHHHHHHHH--hcccCCccee-cC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Confidence 3444556788999999985 3332221111 22 334667999999999999999988764 4566666677777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHH-HHhhccHHHHHHHHHhc
Q 003702 129 GGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGV-AFSITAFPVLARILAEL 181 (801)
Q Consensus 129 ~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~el 181 (801)
.-.++|.++++.+++++.+. ......|+ +-+.|++|.+.......
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 486 VVTILPLIITMLIGKYVLKY--------DPALLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHHHHHHHhCC--------CHHHHHHHhhccCCCcHHHHHHHHhc
Confidence 77777777777666443321 12344443 45788888887765543
No 92
>PRK10490 sensor protein KdpD; Provisional
Probab=93.26 E-value=0.31 Score=60.76 Aligned_cols=124 Identities=11% Similarity=0.031 Sum_probs=82.8
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEeccCCCCcccccccCCCCCCcccccHHHHHHHHHhhccCCCce
Q 003702 622 VSSVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVKQKFKNLEAF 701 (801)
Q Consensus 622 ~~~~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v 701 (801)
...||+|...|+|.++.+++.|.|||.+-+++++++++.++.... ..+.+++.-.+.+ ++.+++. .
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~---------~~~~~~~~l~~~~-~lA~~lG--a-- 314 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHR---------LPEKKRRAILSAL-RLAQELG--A-- 314 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCc---------CCHHHHHHHHHHH-HHHHHcC--C--
Confidence 346899999999999999999999999999999999987653221 1111111111223 2444442 2
Q ss_pred EEEEEEecChhHHHHHHhcccCCcEEEEccCCCchhhcccccCCCCCcccccccccccCCCCcceeEEEE
Q 003702 702 KYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVV 771 (801)
Q Consensus 702 ~~~e~~v~~~~e~~~~l~~~~~~DLvivGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvv 771 (801)
.+.....+|.++++....+..+.+.+|+|+++ ..+ | + --|.+-|-|.... .+.-|.||
T Consensus 315 ~~~~~~~~dva~~i~~~A~~~~vt~IViG~s~----~~~---~--~-~~~s~~~~l~r~~--~~idi~iv 372 (895)
T PRK10490 315 ETATLSDPAEEKAVLRYAREHNLGKIIIGRRA----SRR---W--W-RRESFADRLARLG--PDLDLVIV 372 (895)
T ss_pred EEEEEeCCCHHHHHHHHHHHhCCCEEEECCCC----CCC---C--c-cCCCHHHHHHHhC--CCCCEEEE
Confidence 24455567888888777776679999999998 222 4 1 1356777776653 45567777
No 93
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=93.19 E-value=2 Score=51.66 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-H-cCCChHHHHHHHHHHhhhhHH
Q 003702 313 VSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSL-A-CRIPFKEALALGFLMNTKGLV 385 (801)
Q Consensus 313 ~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~-~-~~~~~~~~~~lgl~l~~kG~~ 385 (801)
...+.+++-....|++++...+.. .|..+..+++.+...-++.+.+.++ + .+++|..++.+|.++.+-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr--~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLK--HWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 346777788888999999988874 4444443333444444444444444 3 499999999999999887754
No 94
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=93.09 E-value=3.2 Score=45.34 Aligned_cols=126 Identities=14% Similarity=0.068 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHH-----hchhHHHHHHHHHhhccCCC--CchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhh
Q 003702 266 TLSIVLLSGFVTDS-----IGIHALFGAFITGVLVPKEG--PFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQ 338 (801)
Q Consensus 266 ~l~~~l~~~~~ae~-----~g~~~~lgaf~aGl~l~~~~--~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~ 338 (801)
.+.+++.+.++++. .++++.+=|.+.|+++.|-. +..+....-++ +....++-+=-+..|+++++.++.. .
T Consensus 10 ~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~-~ 87 (335)
T TIGR00698 10 MALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIAD-V 87 (335)
T ss_pred HHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHH-h
Confidence 33444444455443 47788888899999988621 22222222222 3335566666788999999988864 2
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhc
Q 003702 339 SWGFLVLVIVTACFGKIVG-TVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGK 394 (801)
Q Consensus 339 ~~~~~~~~i~~~~~~K~i~-~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~ 394 (801)
.+... .+.+.....-+.. .++..+.+|++++.+..++.+.+.=|.-+++...-..
T Consensus 88 G~~~l-~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i 143 (335)
T TIGR00698 88 GPNEI-VADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVI 143 (335)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhcccc
Confidence 33222 2223333333444 4455578999999999999988777776555544333
No 95
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=92.18 E-value=1.6 Score=50.98 Aligned_cols=118 Identities=16% Similarity=0.248 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCch-HHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHH
Q 003702 265 VTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFA-GALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFL 343 (801)
Q Consensus 265 ~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~-~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~ 343 (801)
..++.+.+...+++.+++++.++-+++|+++...+... -.+.. +.+ ..+++|......|+++|+..+.. .+...
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~--~~~-~~~~Lp~lLF~~g~~~~~~~l~~--~~~~i 79 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR--EIV-LFLFLPPLLFEAAMNTDLRELRE--NFRPI 79 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH--HHH-HHHHHHHHHHHHHhcCCHHHHHH--HHHHH
Confidence 34444455556777788888888888888775211110 00111 112 35788888889999999988874 33223
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHH
Q 003702 344 VLVIV-TACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVEL 387 (801)
Q Consensus 344 ~~~i~-~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l 387 (801)
..+.+ ..++.-.+.++...+..++||..++.+|.++++-..+..
T Consensus 80 ~~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 80 ALIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 32222 223333333444444679999999999999988876554
No 96
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=90.52 E-value=2.1 Score=41.38 Aligned_cols=98 Identities=18% Similarity=0.203 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHcccCCC--hhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhH
Q 003702 38 LVVLLTRLLAFVLRPLRQP--RVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKS 115 (801)
Q Consensus 38 lil~~~~~~~~ll~~l~~P--~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~ 115 (801)
+.+.++.+.+.+++++|+| ..+|-++++.++.-. +..+ ...-..+.+++.+++--.+|.+++.+.
T Consensus 2 ~~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~--~~~~-----------~~~P~~~~~~~qviiG~~iG~~f~~~~ 68 (156)
T TIGR03082 2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLA--GGLE-----------ITLPPWLLALAQVVIGILIGSRFTREV 68 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhc--CCcc-----------CCCCHHHHHHHHHHHHHHHHccCCHHH
Confidence 3456777888999999988 667777777666522 1111 011234566777778889999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003702 116 IRRAGKKALSIALGGISLPFALGIGTSFALRATV 149 (801)
Q Consensus 116 l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~ 149 (801)
+++..+... .++...+..+.++...++++.+..
T Consensus 69 l~~~~~~~~-~~l~~~~~~l~~~~~~~~~l~~~~ 101 (156)
T TIGR03082 69 LAELKRLWP-AALLSTVLLLALSALLAWLLARLT 101 (156)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887665443 344445555566666666666543
No 97
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=90.42 E-value=8.7 Score=37.11 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHhchh--HHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhh-hHHH
Q 003702 266 TLSIVLLSGFVTDSIGIH--ALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQ-SWGF 342 (801)
Q Consensus 266 ~l~~~l~~~~~ae~~g~~--~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~-~~~~ 342 (801)
.+......+++.+.+|+. .++|+++++.++.-.....-++-+.+.. +-.-+.-..+|.+++...+.... .+..
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~~----~~qviiG~~iG~~f~~~~l~~~~~~~~~ 78 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLLA----LAQVVIGILIGSRFTREVLAELKRLWPA 78 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHHH----HHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 344556666777888874 8889988887776322111112222222 22334567789999877665432 3433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhc
Q 003702 343 LVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGK 394 (801)
Q Consensus 343 ~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~ 394 (801)
.+...+..++.-++..++..+..++++.+++ ++ ..|-|.-++.......
T Consensus 79 ~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~~ 127 (156)
T TIGR03082 79 ALLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAEL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHHh
Confidence 4455556666677888888999999998885 33 4677777777665444
No 98
>PRK04972 putative transporter; Provisional
Probab=89.40 E-value=3.8 Score=48.21 Aligned_cols=131 Identities=18% Similarity=0.254 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHcc-----cCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhcc
Q 003702 37 CLVVLLTRLLAFVLRP-----LRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEM 111 (801)
Q Consensus 37 ~lil~~~~~~~~ll~~-----l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~ 111 (801)
++-+++..+++.+-=+ +++-.--|-+++|+++|- ++...+.... .| .....++.++|+.+|+..+|+.-
T Consensus 387 ~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~--~~~~~~~~~~-~p---~~a~~~l~~~GL~lFla~vGl~a 460 (558)
T PRK04972 387 CAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGF--LRANHPTFGY-IP---QGALNMVKEFGLMVFMAGVGLSA 460 (558)
T ss_pred HHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHh--ccccCCCcee-eC---HHHHHHHHHHhHHHHHHHHHHhh
Confidence 3334444455444333 334445678999999994 3433332222 22 33467899999999999999987
Q ss_pred Chh---HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHH-HHHhhccHHHHHHHHHhc
Q 003702 112 DPK---SIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMG-VAFSITAFPVLARILAEL 181 (801)
Q Consensus 112 d~~---~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~el 181 (801)
-.+ .+++.+.+.+.+++.-.++|.++++.+++++.+. .....+| .+-+.|++|.+....+..
T Consensus 461 G~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~--------~~~~~~G~~aG~~t~~~~l~~~~~~~ 526 (558)
T PRK04972 461 GSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRM--------NRALLFGAIMGARTCAPAMEIISDTA 526 (558)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHhCCCCCcHHHHHHHhhc
Confidence 765 4455566777777777888887777777555432 1234444 445788888777765443
No 99
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=89.22 E-value=9.7 Score=41.46 Aligned_cols=133 Identities=18% Similarity=0.243 Sum_probs=76.8
Q ss_pred cCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHH-
Q 003702 53 LRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIALGGI- 131 (801)
Q Consensus 53 l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~- 131 (801)
++.|.+++.+ +|+++...... +|..-.+.++.+++....+-||..|..++.+.+++.++......+.-.
T Consensus 180 ~~nP~iia~i-~Gl~~~~~~i~---------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kli 249 (321)
T TIGR00946 180 IKFPPLWAPL-LSVILSLVGFK---------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFL 249 (321)
T ss_pred HhCCChHHHH-HHHHHHHHhhc---------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHH
Confidence 4778888754 45777643221 344446779999999999999999999999888777676665555544
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHH
Q 003702 132 SLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILL 207 (801)
Q Consensus 132 ~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~i~ll 207 (801)
+.|.+. +.+...+.. + ....-....++.+.+++...++.+.--.+. +.+-+...++-+++++.+
T Consensus 250 l~P~i~-~~~~~~~~l----~----~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tl 313 (321)
T TIGR00946 250 VQPAVM-AGISKLIGL----R----GLELSVAILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISL 313 (321)
T ss_pred HHHHHH-HHHHHHhCC----C----hHHHHHHHHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHH
Confidence 444433 333333321 1 123344445555555555556554321333 333344444444444433
No 100
>COG2985 Predicted permease [General function prediction only]
Probab=88.89 E-value=3.1 Score=46.61 Aligned_cols=78 Identities=31% Similarity=0.485 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhccChh---HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCch-hHHHHHHHHHhhccHH
Q 003702 97 NLGLLFFLFLVGLEMDPK---SIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQA-PFLIFMGVAFSITAFP 172 (801)
Q Consensus 97 ~~gl~~llF~~Gle~d~~---~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~-~~~l~lg~~ls~Ts~~ 172 (801)
++|+++|.+.+|+|--+. .+|+.+++-..+++.-+ +.+..+++.++..+. ++.. ....+-| +.|++|
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alliv----i~~~~~a~~l~k~~~--~~~~~~~Gm~sG---AlTsTP 132 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLIV----IAALLLAWVLHKLFG--IDLGLIAGMFSG---ALTSTP 132 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHhhcC--CCHHHhhhhhcc---cccCCc
Confidence 899999999999999887 45677777666665543 333344445544432 2111 1122222 455555
Q ss_pred HH---HHHHHhcCc
Q 003702 173 VL---ARILAELKL 183 (801)
Q Consensus 173 vv---~~iL~el~l 183 (801)
.. ..+|.|++.
T Consensus 133 ~L~aa~~~L~~lg~ 146 (544)
T COG2985 133 GLGAAQDILRELGA 146 (544)
T ss_pred hhHHHHHHHHhhcc
Confidence 54 456777764
No 101
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=88.29 E-value=2.6 Score=50.23 Aligned_cols=125 Identities=12% Similarity=0.086 Sum_probs=77.1
Q ss_pred CCCceEEEEeccCCChhHHHHHHHHhcCCCCCCCcEEEEEEeeeccCCchhhHHHhhhccCCCCccCCCCCCccchHHHH
Q 003702 448 NSELRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVA 527 (801)
Q Consensus 448 ~~elrILv~v~~~~~~~~li~Ll~~~~~~~~~~p~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 527 (801)
...-|||||+........+++-+..++.. .....+++|+..-..+..+. ...+++...
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~---~~a~~~av~v~~~~~~~~~~-------------------~~~~~l~~~ 303 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASR---LHAKWTAVYVETPELHRLSE-------------------KEARRLHEN 303 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHH---hCCCeEEEEEeccccccccH-------------------HHHHHHHHH
Confidence 34469999999998888888766666543 33347888876422211110 112333333
Q ss_pred HHHHhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCC-CceEE
Q 003702 528 FEAFRQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHAS-CSVGI 605 (801)
Q Consensus 528 f~~~~~~~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~ap-csVgi 605 (801)
++ .+++-+-.+.+ ..+ .++.+.|.+.|++.++.-||+|-+++.+.... ..+++.+++++++| ..|-|
T Consensus 304 ~~-Lae~lGae~~~--l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~------~~~~l~~~L~~~~~~idv~i 371 (890)
T COG2205 304 LR-LAEELGAEIVT--LYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRL------FKGSLADRLAREAPGIDVHI 371 (890)
T ss_pred HH-HHHHhCCeEEE--EeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHH------hcccHHHHHHhcCCCceEEE
Confidence 33 33332222222 222 68999999999999999999998765332111 13678889999988 34444
No 102
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=87.69 E-value=18 Score=40.57 Aligned_cols=168 Identities=13% Similarity=0.084 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHHcc--cCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003702 33 ILQICLVVLLTRLLAFVLRP--LRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLE 110 (801)
Q Consensus 33 l~~i~lil~~~~~~~~ll~~--l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle 110 (801)
+..+.+...+++.+...++. +.+|..+.-+++|+++.... .. .+.. .-..+..+.++++.+-+++-.+=..
T Consensus 221 l~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~-~~----~~~~--~~~~~~i~~I~~~sLdlfl~~Alms 293 (398)
T TIGR00210 221 IALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL-SF----KKFP--WVAERAVSVIGNVSLSLFLAIALMS 293 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH-HH----hCcc--ccchHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555566666666664 67999999999999998632 10 1100 0123478999999999999988889
Q ss_pred cChhHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCch-hHHHHHHHHHhh--ccHHHHHHHHHhcCccCC
Q 003702 111 MDPKSIRRAGKKALSIALGGISLPFALGIGTS-FALRATVSKGVDQA-PFLIFMGVAFSI--TAFPVLARILAELKLLTT 186 (801)
Q Consensus 111 ~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~-~~l~~~~~~~~~~~-~~~l~lg~~ls~--Ts~~vv~~iL~el~ll~s 186 (801)
+++..+....-+.+.+.+.+++...+....+. ..+++.++ .. ..+-.+|..+-. |+.+-.-.+-+++|-.+.
T Consensus 294 L~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~yd----aaV~~ag~~G~~lGatptaianm~av~~~yg~s~~ 369 (398)
T TIGR00210 294 LQLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYD----AAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQ 369 (398)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHH----HHHHhcccccccccchHHHHHHHHHHHhccCCCCc
Confidence 99999999999999999999887765543333 33332221 00 011234444433 333333334445554333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 003702 187 DVGRMAMSAAAVNDVAAWILLALAV 211 (801)
Q Consensus 187 ~~g~l~ls~a~i~D~~~i~ll~~~~ 211 (801)
-.=-+=+-.+.+-|++...++...+
T Consensus 370 af~ivPlvgaf~id~~n~~~i~~f~ 394 (398)
T TIGR00210 370 AFIVVPLVGAFFIDIINALVIKQFL 394 (398)
T ss_pred ceehhhhHHHHHHHHhhHHHHHHHH
Confidence 3334445678888888776665443
No 103
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=86.80 E-value=43 Score=37.28 Aligned_cols=116 Identities=10% Similarity=0.111 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcccccccccchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH-HH-hhhhHHHHHHH
Q 003702 314 SGLLLPLYFVSSGLKTNITTIQGLQ-SWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGF-LM-NTKGLVELIVL 390 (801)
Q Consensus 314 ~~~~~plfF~~~G~~idl~~l~~~~-~~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl-~l-~~kG~~~l~l~ 390 (801)
.++++-.||..+|+..++..+.... .......+.....+...+.....+..++.+..-.+..|- .+ +-.|. +.++.
T Consensus 66 ~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGT-Aaa~g 144 (368)
T PF03616_consen 66 QDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGT-AAAFG 144 (368)
T ss_pred HHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccH-HHHHH
Confidence 3567778999999999887765422 111122232333445666666666777887776665432 22 22232 44455
Q ss_pred Hhhccc-CcCChhHHHH--HHHHHHHHHHhHHHHHHHHccccc
Q 003702 391 NIGKDR-KVLNDQTFAI--MVLMAVFTTFITTPLVMAVYKPNQ 430 (801)
Q Consensus 391 ~~~~~~-~~i~~~~~~~--~v~~~lv~t~i~~pl~~~l~~~~~ 430 (801)
....+. |.-+.....+ ..+..+...++..|+.+|+.|+.+
T Consensus 145 ~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 145 PTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 555555 5544433322 233344556778899999876554
No 104
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=85.93 E-value=5.7 Score=44.36 Aligned_cols=136 Identities=17% Similarity=0.196 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHH-HHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003702 284 ALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLY-FVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMS 362 (801)
Q Consensus 284 ~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plf-F~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~ 362 (801)
+++....+|.+..+.+-+.++-.+.+..++..+++|.+ |..++-..+...+. .++.+.+...+..+.-++..++..
T Consensus 8 ~i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 84 (385)
T PF03547_consen 8 PIFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLL---SLWFIPVFAFIIFILGLLLGFLLS 84 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666665555677778889999999999997 55555544444333 222333333333333345556666
Q ss_pred HHcCCChHHHH--HHHHHHhhhhHHHHHHHHhhcccCcCChhHHHHHHHHHHHHHHhHHHHHHHHcc
Q 003702 363 LACRIPFKEAL--ALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPLVMAVYK 427 (801)
Q Consensus 363 ~~~~~~~~~~~--~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~pl~~~l~~ 427 (801)
++++.+.++.- .++...+.-|.+.+-+....... +.....++..++..++.-++...+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-----~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 85 RLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-----RGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred HhcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-----hhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 66666655533 33444566667777666544433 22222223333444444444444443
No 105
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=85.68 E-value=1.9 Score=45.29 Aligned_cols=108 Identities=9% Similarity=0.020 Sum_probs=63.1
Q ss_pred eccCCcChHHHHHHHHHHhhCC-CeEEEEEEeccCCCCcccccccCCCCCCcccccHHHHHHHHHhhccCCCceEEEEEE
Q 003702 629 LFFGGNDDQEALAYGARMAEHP-GISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVKQKFKNLEAFKYEERW 707 (801)
Q Consensus 629 ~f~Gg~ddreaL~~a~rma~~~-~v~ltvv~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~ 707 (801)
++.=.|.|+-||+.|.|+.++. +.++|++.+=++... +++.+++....-. ++....+--
T Consensus 31 ~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~------------------~~~~lr~aLAmGa--D~avli~d~ 90 (256)
T PRK03359 31 DAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALT------------------NAKGRKDVLSRGP--DELIVVIDD 90 (256)
T ss_pred ccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchh------------------hHHHHHHHHHcCC--CEEEEEecC
Confidence 4444699999999999999875 489999988654321 1345665544432 333222211
Q ss_pred ---ecChhHHHHHHhccc---CCcEEEEccCC---Cchhh-cccccCCCCCcccccccc
Q 003702 708 ---IKNTSETVDVLGEFN---KCHLFLVGRMP---VSRAA-AMLKVKSDCPELGPVGSL 756 (801)
Q Consensus 708 ---v~~~~e~~~~l~~~~---~~DLvivGr~~---~~~~~-~gl~~w~e~~eLG~igd~ 756 (801)
..|...|..+|.+.- +||||+.|++. ++-+. .-+.+|-..|-+..+-++
T Consensus 91 ~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l 149 (256)
T PRK03359 91 QFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKI 149 (256)
T ss_pred cccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEE
Confidence 235555555544332 29999999997 22222 223344444666665554
No 106
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=85.59 E-value=11 Score=37.30 Aligned_cols=105 Identities=21% Similarity=0.363 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHccc---CCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHH-------HHHHH
Q 003702 37 CLVVLLTRLLAFVLRPL---RQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLL-------FFLFL 106 (801)
Q Consensus 37 ~lil~~~~~~~~ll~~l---~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~-------~llF~ 106 (801)
.++=+..++.+++.||+ |++.----|+.|+++.-.+ |.... ..+....+..++.+|++ |-.-.
T Consensus 19 a~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~Tg------G~kGlaDi~lfsGiglmGGaMlRDfAIva 91 (254)
T TIGR00808 19 AVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTG------GEKGLADIAIFGGFGLMGGAMLRDLAIVA 91 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccC------CccccchhhhhcchhhhhhHHHHHHHHHH
Confidence 33333444445555554 5666666678888876321 11110 01223334445555443 23345
Q ss_pred HhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003702 107 VGLEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRAT 148 (801)
Q Consensus 107 ~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~ 148 (801)
.+.|.|.+++||.+..-..--+.+.++||++|..+++.+++.
T Consensus 92 TAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~ 133 (254)
T TIGR00808 92 TAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYR 133 (254)
T ss_pred HhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 688999999999999888888889999999999999998764
No 107
>PRK03818 putative transporter; Validated
Probab=85.32 E-value=23 Score=41.68 Aligned_cols=106 Identities=22% Similarity=0.274 Sum_probs=69.4
Q ss_pred hHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHh----hhhhHHHHHHHHHHH
Q 003702 58 VIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRR----AGKKALSIALGGISL 133 (801)
Q Consensus 58 ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l~~----~~~~~~~ia~~~~~i 133 (801)
.-|-+++|+++|- ++...+.... .| ......+.++|+.+|+..+|++--.+-+.. .+.+...+++...++
T Consensus 403 ~~G~L~~gl~~g~--~~~~~~~~~~-~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~ 476 (552)
T PRK03818 403 AGGPLIVALILGR--IGSIGKLYWF-MP---PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAV 476 (552)
T ss_pred chHHHHHHHHHHh--ccCCCCceee-cC---HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4578999999994 3333222211 23 234678899999999999999888765543 356666777777778
Q ss_pred HHHHHHHHHHHHHhhhcCCCCchhHHHHHH-HHHhhccHHHHHHH
Q 003702 134 PFALGIGTSFALRATVSKGVDQAPFLIFMG-VAFSITAFPVLARI 177 (801)
Q Consensus 134 p~~~~~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~i 177 (801)
|.++++.+++++.+. .....+| .+-+.|++|.+...
T Consensus 477 ~~~~~~~~~~~~~~~--------~~~~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 477 PLLIVGILARMLAKM--------NYLTLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHHHHHHHcC--------CHHHHHHHHhccCCCcHHHHHH
Confidence 887777776544322 1234444 34577888877665
No 108
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=85.02 E-value=48 Score=33.86 Aligned_cols=110 Identities=13% Similarity=0.193 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhh
Q 003702 303 GALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTK 382 (801)
Q Consensus 303 ~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~k 382 (801)
+.+..-+.+-+-.+-.|+| =++..+. ..|..+..-++++.+.-++.+++.+++++.+.. + -..+.+|
T Consensus 62 ~~i~~lLgPAtVAlAvPLY-------kq~~~ik--~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~--~--~~Sl~Pk 128 (230)
T COG1346 62 QWINFLLGPATVALAVPLY-------KQRHLIK--RHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE--L--ILSLLPK 128 (230)
T ss_pred HHHHHHHHHHHHHHhhHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--H--HHHhccc
Confidence 3444444554445666665 1233343 356556666666777778888888999988654 2 3345789
Q ss_pred hHHHHHHHHhhcccCcCChhHHHHHHHHHHHHHHhHHHHHHHH
Q 003702 383 GLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPLVMAV 425 (801)
Q Consensus 383 G~~~l~l~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~pl~~~l 425 (801)
....-+......+.|-+.+-+-..++++-++.+.+.+++.+++
T Consensus 129 SvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 129 SVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred ccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888888888888888876666666666666666667777665
No 109
>COG2855 Predicted membrane protein [Function unknown]
Probab=84.36 E-value=66 Score=34.91 Aligned_cols=87 Identities=21% Similarity=0.177 Sum_probs=58.0
Q ss_pred HcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHH
Q 003702 50 LRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIALG 129 (801)
Q Consensus 50 l~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 129 (801)
....++|..+--|+.||++|.. ...+. ... ..-...-+.+-++|.+ +.|.+++++++...+.+.+.+-..
T Consensus 32 ~~~~~l~al~lAIllGi~l~~l--~~~~~---~~~-~GI~fs~k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~~~ 101 (334)
T COG2855 32 SIHLGLSALTLAILLGILLGIL--PQIPA---QTS-AGITFSSKKLLRLGIV----LLGFRLTLSDIADVGGSGVLIIAI 101 (334)
T ss_pred hhhcCchHHHHHHHHHHHHhcc--ccchh---hhc-cchhhhHHHHHHHHHH----HHcceeeHHHHHHcCccHHHHHHH
Confidence 4456789999999999999932 11110 000 0011223445555655 568899999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003702 130 GISLPFALGIGTSFALR 146 (801)
Q Consensus 130 ~~~ip~~~~~~~~~~l~ 146 (801)
.+..++++++.++.+++
T Consensus 102 ~l~~t~~~~~~lg~~lg 118 (334)
T COG2855 102 TLSSTFLFAYFLGKLLG 118 (334)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 77777777776666544
No 110
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=83.99 E-value=9.5 Score=40.88 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=53.7
Q ss_pred hHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHH
Q 003702 58 VIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFAL 137 (801)
Q Consensus 58 ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~ 137 (801)
.+--++.|+++|+..-+ + .+.++.=..+++.++.|..|.++|++.+.+.+.+.+.+++..+++++++
T Consensus 169 lilpILiGmilGNld~~----~---------~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~ 235 (312)
T PRK12460 169 ALLPLVLGMILGNLDPD----M---------RKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF 235 (312)
T ss_pred HHHHHHHHHHHhccchh----h---------HHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 44456778888862111 1 1112222233788899999999999999999999999999888888888
Q ss_pred HHHHHHHH
Q 003702 138 GIGTSFAL 145 (801)
Q Consensus 138 ~~~~~~~l 145 (801)
++.+..++
T Consensus 236 ~~~i~rll 243 (312)
T PRK12460 236 NIFADRLV 243 (312)
T ss_pred HHHHHHHh
Confidence 77766555
No 111
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=83.49 E-value=11 Score=37.83 Aligned_cols=49 Identities=20% Similarity=0.334 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHH
Q 003702 343 LVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLN 391 (801)
Q Consensus 343 ~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~ 391 (801)
.+.+-+...++-++++++..++.++|++|++.++.+++.-..-+..+..
T Consensus 58 ~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 58 ALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 4456667788899999999999999999999999888776666665554
No 112
>COG3329 Predicted permease [General function prediction only]
Probab=82.94 E-value=32 Score=36.46 Aligned_cols=128 Identities=12% Similarity=0.092 Sum_probs=76.3
Q ss_pred HHHHHHhc--hhHHHHHHHHHhhccC---CCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHH
Q 003702 274 GFVTDSIG--IHALFGAFITGVLVPK---EGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIV 348 (801)
Q Consensus 274 ~~~ae~~g--~~~~lgaf~aGl~l~~---~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~ 348 (801)
-++.+..| +++.+.-|+.|++++. +-.+.+.+.+.+- -.++--.-.--|+.+.-+.+.. .+..++.-+.
T Consensus 6 ~fl~~f~~nL~sP~llFf~~Gmlia~~ksdl~iP~~i~~~ls----lyLL~aIG~kGGveir~snl~a--~v~~~~~~~a 79 (372)
T COG3329 6 EFLMDFVGNLLSPTLLFFILGMLIAAFKSDLEIPEAIYQALS----LYLLLAIGFKGGVEIRNSNLTA--MVLPVALGVA 79 (372)
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHhccccCchHHHHHHH----HHHHHHHhcccceeeecCCcch--hHHHHHHHHH
Confidence 34444444 4788888999988873 1112222222221 1111111223344444444442 3333445555
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCChhHHHHH
Q 003702 349 TACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIM 407 (801)
Q Consensus 349 ~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~~ 407 (801)
+.++.-+++.++..++.|++..|+...+-..+.-..+.++.+...++.--+..+-|...
T Consensus 80 L~~li~~ia~f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A 138 (372)
T COG3329 80 LGFLIVFIAYFLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPA 138 (372)
T ss_pred HHHHHHHHHHHHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHH
Confidence 66666777888888888999999999988888777777777776666655566665544
No 113
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=81.06 E-value=3.1 Score=45.02 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHhcccccccccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHH
Q 003702 311 DLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLV-IVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIV 389 (801)
Q Consensus 311 ~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~-i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l 389 (801)
.+.++++=|+-|.-+|..+|+..+.. +.+ ..++ -..+=++ +..+++.+...|++.+|+-.+|.+=+.-|-.++.+
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgplla-nP~--~~ll~gaaAQ~G-iF~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~ 176 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILA-RPW--ASITVALFAEMG-TFATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFA 176 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHh-ChH--HHHHHHHHHHhh-HHHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHH
Confidence 34457888888999999999987653 222 1122 1233333 23455666778999999999999888888777766
Q ss_pred HHhhc-c-cCcCChhHHHHHHHHHHHHHHhHHHHHHHHcccccccc
Q 003702 390 LNIGK-D-RKVLNDQTFAIMVLMAVFTTFITTPLVMAVYKPNQKTS 433 (801)
Q Consensus 390 ~~~~~-~-~~~i~~~~~~~~v~~~lv~t~i~~pl~~~l~~~~~~~~ 433 (801)
.+... + .+.|.-..|+-| -+.-.+-||++|.+..+++|..
T Consensus 177 s~kLAp~Llg~IaVAAYsYM----aLVPiiqPpimklLttkkER~I 218 (399)
T TIGR03136 177 SLILAKDLFVPISIIAYLYL----SLTYAGYPYLIKLLVPKKYRGL 218 (399)
T ss_pred HHhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhhcCHHHHcc
Confidence 64322 1 123333334433 2335667889988865544433
No 114
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=79.94 E-value=2.1 Score=36.44 Aligned_cols=49 Identities=18% Similarity=-0.001 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhH-HHHHHHhhcCCCceE
Q 003702 550 GMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFR-WVNKRVLEHASCSVG 604 (801)
Q Consensus 550 ~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~-~v~~~vl~~apcsVg 604 (801)
.+.+.+.+.|++.++|.|++|.|.....+... .+ +...++.++++|||.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~------~~~~~~~~~~~~~~~~vl 84 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRL------GASANVLVVIKGAGIPVL 84 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhcc------CchhhhhhcccccCCcee
Confidence 78899999999999999999999764333222 23 556788999999974
No 115
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=79.93 E-value=8.3 Score=46.25 Aligned_cols=122 Identities=13% Similarity=0.107 Sum_probs=79.8
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEeccCCCCcccccccCCCCCCcccccHHHHHHH---HHhhccCCC
Q 003702 623 SSVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAE---VKQKFKNLE 699 (801)
Q Consensus 623 ~~~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~---~~~~~~~~~ 699 (801)
..||+|...|++..+..++.|.|+|..-+..+|++++..+.... ..+.+...+.+ +.+++..
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~-------------~~~~~~~~l~~~~~Lae~lGa-- 312 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHR-------------LSEKEARRLHENLRLAEELGA-- 312 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEecccccc-------------ccHHHHHHHHHHHHHHHHhCC--
Confidence 35999999999999999999999999999999999998654432 11122333333 2333321
Q ss_pred ceEEEEEEecChhHHHHHHhcccCCcEEEEccCCCchhhcccccCCCCCcccccccccccCCCCcceeEEEE
Q 003702 700 AFKYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVV 771 (801)
Q Consensus 700 ~v~~~e~~v~~~~e~~~~l~~~~~~DLvivGr~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvv 771 (801)
........|.++++....+..+.--+|+|+++.+ .|-+.-. |.+.|-|+..- ....|-+|
T Consensus 313 --e~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~-------rw~~~~~-~~l~~~L~~~~--~~idv~ii 372 (890)
T COG2205 313 --EIVTLYGGDVAKAIARYAREHNATKIVIGRSRRS-------RWRRLFK-GSLADRLAREA--PGIDVHIV 372 (890)
T ss_pred --eEEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcch-------HHHHHhc-ccHHHHHHhcC--CCceEEEe
Confidence 2334444566666666666666889999999722 4643222 78888887753 33344444
No 116
>PRK09903 putative transporter YfdV; Provisional
Probab=79.68 E-value=36 Score=36.89 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=63.9
Q ss_pred cCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHH-HH
Q 003702 53 LRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIALG-GI 131 (801)
Q Consensus 53 l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~-~~ 131 (801)
++-|.+++.++ |+++.- +|. -.|..-.+.++.+++...-+-||..|..+....++.. ++.+...+. -+
T Consensus 171 ~~nP~iia~~~-gl~~~l--~~i-------~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli 239 (314)
T PRK09903 171 AKEPVVWAPVL-ATILVL--VGV-------KIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLI 239 (314)
T ss_pred HhchHHHHHHH-HHHHHH--cCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHH
Confidence 44577777554 565542 222 1344456789999999999999999999877665443 333333333 33
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhccHHHHHHHHHhcCccCCh
Q 003702 132 SLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTD 187 (801)
Q Consensus 132 ~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~ 187 (801)
+.|++. +...+.+. . + ....-....++.+.+++.+.++.+.--.+.+
T Consensus 240 ~~P~i~-~~~~~~~~--l--~----~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~ 286 (314)
T PRK09903 240 LMPLAL-LLVGMACH--L--N----SEHLQMMVLAGALPPAFSGIIIASRFNVYTR 286 (314)
T ss_pred HHHHHH-HHHHHHcC--C--C----cHHHHHHHHHHcccHHHHHHHHHHHHcccHH
Confidence 455543 22222221 1 1 2233455555666666666666554323443
No 117
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=79.11 E-value=79 Score=32.37 Aligned_cols=42 Identities=21% Similarity=0.107 Sum_probs=31.0
Q ss_pred HHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003702 106 LVGLEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRA 147 (801)
Q Consensus 106 ~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~ 147 (801)
..=+=-..+.+||+|+....-.+.|.++.++.+..++.+++.
T Consensus 76 AvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~ 117 (230)
T COG1346 76 AVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGL 117 (230)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333445688999999998887777887777777777776653
No 118
>PRK12342 hypothetical protein; Provisional
Probab=78.88 E-value=4.7 Score=42.23 Aligned_cols=104 Identities=13% Similarity=0.019 Sum_probs=59.7
Q ss_pred EeccCCcChHHHHHHHHHHhhCCCeEEEEEEeccCCCCcccccccCCCCCCcccccHHHHHHHHHhhccCCCceEEEE-E
Q 003702 628 VLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVKQKFKNLEAFKYEE-R 706 (801)
Q Consensus 628 v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e-~ 706 (801)
+++.=.|.|+-||+.|.|+.+ .+.++|++.+=++... +++.+++....-. ++....+ .
T Consensus 29 ~~~~iNp~D~~AlE~AlrLk~-~g~~Vtvls~Gp~~a~------------------~~~l~r~alamGa--D~avli~d~ 87 (254)
T PRK12342 29 AEAKISQFDLNAIEAASQLAT-DGDEIAALTVGGSLLQ------------------NSKVRKDVLSRGP--HSLYLVQDA 87 (254)
T ss_pred CCccCChhhHHHHHHHHHHhh-cCCEEEEEEeCCChHh------------------HHHHHHHHHHcCC--CEEEEEecC
Confidence 345557999999999999995 5789999987654211 1224455444422 2322222 1
Q ss_pred --EecChhHHHHHHhccc---CCcEEEEccCC---C----chhhcccccCCCCCccccccc
Q 003702 707 --WIKNTSETVDVLGEFN---KCHLFLVGRMP---V----SRAAAMLKVKSDCPELGPVGS 755 (801)
Q Consensus 707 --~v~~~~e~~~~l~~~~---~~DLvivGr~~---~----~~~~~gl~~w~e~~eLG~igd 755 (801)
--.|...|..+|...- +||||+.|+.. + .|+++.+-+| |-+.-+-+
T Consensus 88 ~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~---P~vt~v~~ 145 (254)
T PRK12342 88 QLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQL---PVINAVSK 145 (254)
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCC---CcEeeEEE
Confidence 1124433444443221 39999999997 1 4555555555 44444433
No 119
>COG2431 Predicted membrane protein [Function unknown]
Probab=78.68 E-value=38 Score=35.52 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=48.5
Q ss_pred hhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccC---hhHHH-hhhhhHHHHHHHHHH
Q 003702 57 RVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMD---PKSIR-RAGKKALSIALGGIS 132 (801)
Q Consensus 57 ~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d---~~~l~-~~~~~~~~ia~~~~~ 132 (801)
++.+..+.|+++|-..-... ...+...+..+.+++|.+|.++. ....+ .-.|+....++...+
T Consensus 108 k~~~~vl~g~~~G~l~~~~~-------------~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~il 174 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSFL-------------NFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLL 174 (297)
T ss_pred HHHHHHHHHHHHHHHhcccc-------------cCchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHH
Confidence 56778888888885322111 11456688899999999999987 22111 222666777776666
Q ss_pred HHHHHHHHHHHHHH
Q 003702 133 LPFALGIGTSFALR 146 (801)
Q Consensus 133 ip~~~~~~~~~~l~ 146 (801)
-..+.|.+.+.++.
T Consensus 175 ssliGG~iaa~~l~ 188 (297)
T COG2431 175 SSLIGGLIAAFLLD 188 (297)
T ss_pred HHHHHHHHHHHHHh
Confidence 55655655555444
No 120
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=78.22 E-value=88 Score=32.29 Aligned_cols=105 Identities=12% Similarity=0.128 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHH
Q 003702 308 KVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVEL 387 (801)
Q Consensus 308 kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l 387 (801)
-+.+-+-.+-.|+| =+...+. ..|..+..-+.++.+.-+++++..++.++.+.. +-..+.+|....-
T Consensus 70 lLgPAtVALAvPLY-------~q~~~lk--~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKSVTtP 136 (232)
T PRK04288 70 FLEPATIAFAIPLY-------KKRDVLK--KYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQAATTA 136 (232)
T ss_pred HHHHHHHHHHHHHH-------HhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHhhhHH
Confidence 34444445555655 1223333 244444444555666667778888888888653 3444678998777
Q ss_pred HHHHhhcccCcCChhHHHHHHHHHHHHHHhHHHHHHHH
Q 003702 388 IVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPLVMAV 425 (801)
Q Consensus 388 ~l~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~pl~~~l 425 (801)
+...+..+.|-+.+-.-..++++-++-.++.+++.+++
T Consensus 137 IAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 137 IALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77778888877665555555555555556666666664
No 121
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=78.08 E-value=19 Score=39.18 Aligned_cols=101 Identities=20% Similarity=0.191 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCh--hHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhcc
Q 003702 34 LQICLVVLLTRLLAFVLRPLRQPR--VIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEM 111 (801)
Q Consensus 34 ~~i~lil~~~~~~~~ll~~l~~P~--ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~ 111 (801)
.++.+++.++...+++++++|+|. ++|-++++.++.-..... .-+| +.+..++.+++=-.+|.++
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~------~~~P-------~~l~~~aqv~iG~~iG~~f 221 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPS------FSLP-------PWLVNAAQVLIGASIGSRF 221 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCC------CCCC-------HHHHHHHHHHHHHHHHccc
Confidence 345666677888999999999864 566666666665331111 1112 2345555666777999999
Q ss_pred ChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003702 112 DPKSIRRAGKKALSIALGGISLPFALGIGTSFALRAT 148 (801)
Q Consensus 112 d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~ 148 (801)
+.+.+++..|. +..++...+.-+.++.++++.+...
T Consensus 222 ~~~~l~~~~~~-~~~~l~~~~~~l~~~~~~a~~l~~~ 257 (318)
T PF05145_consen 222 TRETLRELRRL-LPPALLSTLLLLALCALFAWLLSRL 257 (318)
T ss_pred cHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998776554 3344444444555555555555543
No 122
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=76.13 E-value=58 Score=37.10 Aligned_cols=122 Identities=16% Similarity=0.257 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccC--CCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhH
Q 003702 263 VCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPK--EGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSW 340 (801)
Q Consensus 263 ~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~--~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~ 340 (801)
..+++.+..+++.+++.+..+.+....+.|++..- -.+......-.-+.+. .+++|+-....|+++|...+.+ .|
T Consensus 11 ~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~-~l~l~ilLf~~g~~l~~~~l~~--~~ 87 (429)
T COG0025 11 LLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFL-VLFLAILLFAGGLELDLRELRR--VW 87 (429)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHH-HHHHHHHHHHhHhcCCHHHHHH--hH
Confidence 33444555555666666666555555555554431 0111111111112222 6677777778899999988874 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--CCChHHHHHHHHHHhhhhHHHH
Q 003702 341 GFLVLVIVTACFGKIVGTVAMSLAC--RIPFKEALALGFLMNTKGLVEL 387 (801)
Q Consensus 341 ~~~~~~i~~~~~~K~i~~~l~~~~~--~~~~~~~~~lgl~l~~kG~~~l 387 (801)
..+..+.....+...++.....++. ++|+..++.+|..+++-.-+.+
T Consensus 88 ~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v 136 (429)
T COG0025 88 RSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAV 136 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhh
Confidence 3344444444444444444444444 8888899999988888775544
No 123
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=75.85 E-value=5.1 Score=43.98 Aligned_cols=117 Identities=11% Similarity=0.058 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcccccccccchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhH-HHHHHHH
Q 003702 314 SGLLLPLYFVSSGLKTNITTIQGLQ-SWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGL-VELIVLN 391 (801)
Q Consensus 314 ~~~~~plfF~~~G~~idl~~l~~~~-~~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~-~~l~l~~ 391 (801)
.+.|+-+||..+|+.-++..+.... ...+............-......+.+.+.+..-++..|-+--..|+ .+.+...
T Consensus 68 ~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~~~ 147 (404)
T COG0786 68 QDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAWGP 147 (404)
T ss_pred ccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHHHHH
Confidence 4788899999999999998776422 1111112222222334444445566677766666655332222232 2556666
Q ss_pred hhcccCcCChhHHH--HHHHHHHHHHHhHHHHHHHHccccc
Q 003702 392 IGKDRKVLNDQTFA--IMVLMAVFTTFITTPLVMAVYKPNQ 430 (801)
Q Consensus 392 ~~~~~~~i~~~~~~--~~v~~~lv~t~i~~pl~~~l~~~~~ 430 (801)
...+.|.-+..... ...+..+.-.++.+|+.+|+.++.+
T Consensus 148 ~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k~~ 188 (404)
T COG0786 148 TFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKKNK 188 (404)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhcC
Confidence 66777665543322 2233344455667899999976543
No 124
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=75.63 E-value=14 Score=36.55 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=31.6
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEec
Q 003702 625 VITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFL 660 (801)
Q Consensus 625 ~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v 660 (801)
||+|.+.||.|.--++.++.+.++..+.+++++++-
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd 36 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVD 36 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 589999999999999999999887777788888875
No 125
>COG2985 Predicted permease [General function prediction only]
Probab=75.59 E-value=12 Score=42.10 Aligned_cols=107 Identities=22% Similarity=0.270 Sum_probs=68.0
Q ss_pred hhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChh---HHHhhhhhHHHHHHHHHHH
Q 003702 57 RVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPK---SIRRAGKKALSIALGGISL 133 (801)
Q Consensus 57 ~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~---~l~~~~~~~~~ia~~~~~i 133 (801)
..-|.+++|++|| .+|.+.+.+- ..|+ .....+.++|+.+||=-+|++---+ .+-..+-.....+..-.++
T Consensus 397 ~aGGpLivaLiLG--~ig~iGpl~w-~mP~---~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~v 470 (544)
T COG2985 397 NAGGPLIVALILG--FIGAIGPLTW-FMPP---GALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLV 470 (544)
T ss_pred ccccHHHHHHHHH--HhcccCceEE-EcCh---hHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHHH
Confidence 4457788999998 3555554332 2333 3467889999988877777765433 2334455555666667777
Q ss_pred HHHHHHHHHHHHHhhhcCCCCchhHHHHHHH-HHhhccHHHHHHH
Q 003702 134 PFALGIGTSFALRATVSKGVDQAPFLIFMGV-AFSITAFPVLARI 177 (801)
Q Consensus 134 p~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~i 177 (801)
|.+.++.++.++.+. .+....|+ +-+.|++|...-.
T Consensus 471 p~i~~~llg~~v~km--------n~~~l~G~laGs~T~ppaLa~a 507 (544)
T COG2985 471 PVIIVFLLGRYVLKM--------NWLLLCGALAGSMTDPPALAFA 507 (544)
T ss_pred HHHHHHHHHHHHHhc--------cHHHHhhHHhcCCCChHHHHHH
Confidence 877777777766543 23444554 4488998866553
No 126
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=75.33 E-value=1.3e+02 Score=32.93 Aligned_cols=99 Identities=19% Similarity=0.211 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHcccCCChh--HHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccCh
Q 003702 36 ICLVVLLTRLLAFVLRPLRQPRV--IAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDP 113 (801)
Q Consensus 36 i~lil~~~~~~~~ll~~l~~P~i--i~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~ 113 (801)
+.+...++.+.+.+.|++|+|.. .+-++.|.++.-.. +. ..+.-+.+..++..++--.+|.++|.
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~-~~------------~~~lP~wl~~va~~~iG~~IG~~f~~ 256 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGG-GI------------TIQLPAWLLAVAQALIGALIGSRFDR 256 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhccc-ce------------eeeCCHHHHHHHHHHHHHHHcccccH
Confidence 66677778888899999998863 33333333332111 11 11112334467777888899999999
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003702 114 KSIRRAGKKALSIALGGISLPFALGIGTSFALRAT 148 (801)
Q Consensus 114 ~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~ 148 (801)
..++...|....+. ...+.-+.++..+++++.+.
T Consensus 257 ~~l~~~~r~~~~~~-v~ii~l~~~~~~~a~ll~~~ 290 (352)
T COG3180 257 SILREAKRLLPAIL-VSIIALMAIAAGMAGLLSWL 290 (352)
T ss_pred HHHHHhHhhcchHH-HHHHHHHHHHHHHHHHHHHh
Confidence 99887766544332 22222233444455555543
No 127
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=74.72 E-value=3.9 Score=43.78 Aligned_cols=111 Identities=20% Similarity=0.314 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhh
Q 003702 314 SGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIG 393 (801)
Q Consensus 314 ~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~ 393 (801)
++++=|+-|.-+|..+|+..+.. +.+. .++-..+=++ +..+++.+...|++.+|+-.+|.+=+.-|-.++.+....
T Consensus 68 ~~l~P~LIF~GIGAmtDFgplla-nP~~--~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~L 143 (360)
T PF03977_consen 68 NGLFPPLIFMGIGAMTDFGPLLA-NPKT--LLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKL 143 (360)
T ss_pred cchhhHHHHHHHhHHHhhHHHHh-CHHH--HHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhh
Confidence 57888888999999999987653 2222 2222223222 344666777789999999999998888887777766432
Q ss_pred c-c-cCcCChhHHHHHHHHHHHHHHhHHHHHHHHccccccc
Q 003702 394 K-D-RKVLNDQTFAIMVLMAVFTTFITTPLVMAVYKPNQKT 432 (801)
Q Consensus 394 ~-~-~~~i~~~~~~~~v~~~lv~t~i~~pl~~~l~~~~~~~ 432 (801)
- + .+.+.-..|+-| -+.-.+-||+.|.+..+++|.
T Consensus 144 Ap~LlgpIaVaAYsYM----aLvPiiqPpimklLttkkeR~ 180 (360)
T PF03977_consen 144 APHLLGPIAVAAYSYM----ALVPIIQPPIMKLLTTKKERK 180 (360)
T ss_pred hHHHHHHHHHHHHHHH----HHHhhhhhHHHHHhcCHHHHh
Confidence 2 1 122222334433 233566788988876544443
No 128
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=74.52 E-value=37 Score=38.03 Aligned_cols=110 Identities=15% Similarity=0.214 Sum_probs=65.3
Q ss_pred HHHHHHhchhHHHHHHHHHhhccCCCCchHHHH-HHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHH
Q 003702 274 GFVTDSIGIHALFGAFITGVLVPKEGPFAGALV-EKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACF 352 (801)
Q Consensus 274 ~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~-~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~ 352 (801)
+.++..+|....+=-...|++...++-.+-+.. ..+.+++..+-+.+...--|++++++.+.. ..|+.+.+..+..++
T Consensus 23 s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~-a~~palsLATlGVl~ 101 (574)
T COG3263 23 SLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRV-AAGPALSLATLGVLI 101 (574)
T ss_pred HHHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHH-HhhhhHHHHHHHHHH
Confidence 334445555555554555666653221111111 234455555666666667889998887764 344444444445555
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhhhhH
Q 003702 353 GKIVGTVAMSLACRIPFKEALALGFLMNTKGL 384 (801)
Q Consensus 353 ~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~ 384 (801)
.-.+....+.+.++.+|-|++.+|.+.+.--.
T Consensus 102 Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDA 133 (574)
T COG3263 102 TSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDA 133 (574)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHhhccccH
Confidence 55566667788899999999999987655443
No 129
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=72.20 E-value=0.92 Score=50.63 Aligned_cols=113 Identities=16% Similarity=0.344 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCch--HHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHH
Q 003702 267 LSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFA--GALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLV 344 (801)
Q Consensus 267 l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~--~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~ 344 (801)
++.++....+.+.++++..+|-.++|+++... .+. +...+.++.+ .++.+++.....|.++|...+.. .+....
T Consensus 5 i~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~-~~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~--~~~~~~ 80 (380)
T PF00999_consen 5 ILLAFVAGILFRRLGIPSIIGYILVGIVLGPS-GLGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRR--NWRRAL 80 (380)
T ss_dssp --------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG------------
T ss_pred eehHHHHHHHHHHhCCCHHHHHHHheeehhhh-hhhhccchhhHHHHH-HHHHHHHHHHHHHHhhccccccc--cccccc
Confidence 33344455578899999999999999999742 222 1112344555 47777888888999999998864 233333
Q ss_pred HHHHHHHHHHHHH-HHHHHH---HcCCChHHHHHHHHHHhhhh
Q 003702 345 LVIVTACFGKIVG-TVAMSL---ACRIPFKEALALGFLMNTKG 383 (801)
Q Consensus 345 ~~i~~~~~~K~i~-~~l~~~---~~~~~~~~~~~lgl~l~~kG 383 (801)
...+..++.-++. ++.... ..++++.+++.+|..+.+-.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 81 ALGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp ---------------------------------TTHHHHTT--
T ss_pred ccccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 3333333333444 444443 47889999999998876544
No 130
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=71.19 E-value=7 Score=44.38 Aligned_cols=78 Identities=22% Similarity=0.325 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCccEEEec---CccccccCCcccccchhhHHHHHHHhhcCCCceEEEecCCCC--CC--CccccCCcce
Q 003702 552 HEDICSSAERKRAAMIILP---FHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDRGLG--GS--THVAASNVSS 624 (801)
Q Consensus 552 ~~~I~~~A~~~~a~lIil~---~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgilvdrg~~--~~--~~~~~~~~~~ 624 (801)
.++||.+|+++++|||++| ||.+..... .-...++.+-+.-+-.-||..-++-|.+.. .. ...--.+...
T Consensus 41 FeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~---~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNl 117 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGDLFHENKPSRK---TLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNL 117 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCCccHH---HHHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCCCc
Confidence 3799999999999999999 676543221 123346666677788899999999888632 11 1111122345
Q ss_pred EEEEeccC
Q 003702 625 VITVLFFG 632 (801)
Q Consensus 625 ~i~v~f~G 632 (801)
+|.+|.++
T Consensus 118 NIsIPVFs 125 (646)
T KOG2310|consen 118 NISIPVFS 125 (646)
T ss_pred ceeeeeEE
Confidence 78888775
No 131
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=69.15 E-value=31 Score=37.27 Aligned_cols=75 Identities=28% Similarity=0.455 Sum_probs=38.6
Q ss_pred HHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHH-
Q 003702 59 IAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFAL- 137 (801)
Q Consensus 59 i~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~- 137 (801)
+|-++.|.+-||.....+.+++..+|. =-+.+||...|++- -++++..+|..+.+...+++.|.+-
T Consensus 184 lGgliIG~~~g~~g~~~i~pf~~~lF~------------G~L~lFLLeMGl~A-~~rL~~l~~~g~~li~Fgi~~Pli~a 250 (327)
T PF05982_consen 184 LGGLIIGFLAGPEGVESIKPFFVDLFK------------GVLCLFLLEMGLVA-ARRLRDLRKVGWFLIAFGILMPLINA 250 (327)
T ss_pred HHHHHHhheeCccchhhccchhhccHH------------HHHHHHHHHhhHHH-HHhhHHHHhhhHHHHHHHHHHHHHHH
Confidence 344445555556555444444433332 22566777777765 2334444444455556667777654
Q ss_pred --HHHHHHHHH
Q 003702 138 --GIGTSFALR 146 (801)
Q Consensus 138 --~~~~~~~l~ 146 (801)
|..++++++
T Consensus 251 ~ig~~lg~~~g 261 (327)
T PF05982_consen 251 LIGIGLGWLLG 261 (327)
T ss_pred HHHHHHHHHhC
Confidence 444444443
No 132
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=67.94 E-value=2e+02 Score=31.74 Aligned_cols=256 Identities=14% Similarity=0.110 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCCcc-cc-----ccc-ccCC-C-----cHHHHHHHHHH
Q 003702 32 AILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNK-DF-----LKA-VFPS-R-----SLTVLDTLANL 98 (801)
Q Consensus 32 ~l~~i~lil~~~~~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~-~~-----~~~-lfp~-~-----~~~~l~~l~~~ 98 (801)
-.-++..+++...+++.-.+|---|.+.--|-.|+++...-+.... .. .+. ...+ . ....++.+-++
T Consensus 21 ~~~~~vMi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L~~~~~~ 100 (399)
T TIGR03136 21 AITRLALIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFLQPVYNF 100 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCccccccccccccccccccccccchhccccCCcHHHHHHHH
Confidence 3445555555555666666666678888888889988743221000 00 000 0000 0 01233333333
Q ss_pred HH------HHHHHHHhhccChhHHHhhhhhHHHHH-HH--HHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhc
Q 003702 99 GL------LFFLFLVGLEMDPKSIRRAGKKALSIA-LG--GISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSIT 169 (801)
Q Consensus 99 gl------~~llF~~Gle~d~~~l~~~~~~~~~ia-~~--~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~T 169 (801)
|+ .++.+-+|--+|+.-+..+.|..+..| .. |+.+++..+ ..++.. ..++-.+|++-..-
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF~t~~~A----~~lGF~-------~~eAAsIgIIGgAD 169 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILARPWASITVALFAEMGTFATLVIG----YYCGLT-------PGEAAAVGTIGGAD 169 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHHHHHHHH----HHcCCC-------HHHhhHHhhcccCC
Confidence 32 234455688899999999998877632 22 333333332 222221 13455555554332
Q ss_pred cHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003702 170 AFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVTPIFKWME 249 (801)
Q Consensus 170 s~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~ 249 (801)
.|..+.- ..|+.+.-+|.+++++ .. +...+-.+-+|+++++.
T Consensus 170 GPTaIf~---s~kLAp~Llg~IaVAA--------Ys---------------------------YMaLVPiiqPpimklLt 211 (399)
T TIGR03136 170 GPMVLFA---SLILAKDLFVPISIIA--------YL---------------------------YLSLTYAGYPYLIKLLV 211 (399)
T ss_pred ccHHHHH---HHhhhhHhHHHHHHHH--------HH---------------------------HHHHHhcccchHHHhhc
Confidence 2221211 1233333333322111 00 11222334455555543
Q ss_pred hhc------C-CCCCc-chHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHH
Q 003702 250 KRC------P-DGEPV-KELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLY 321 (801)
Q Consensus 250 ~~~------~-~~~~~-~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plf 321 (801)
.+. + +.+++ +..-+.+-+..+.+++++. =.-.+.+|.+++|-.+.+.+ . +++.+..+.-..++..-+.
T Consensus 212 tkkER~I~M~~~~r~VSk~eKilFpivv~i~~~ll~--P~a~pLig~Lm~GNllrEsG-v-~rLs~taqn~l~nivTifL 287 (399)
T TIGR03136 212 PKKYRGLEVEMEFPDVSQRAKFVFTIVAAMLLCLLL--PVASPLILSFFLGVAIKEAQ-I-EPYQNLLEKTLTYGSTLFL 287 (399)
T ss_pred CHHHHcccCccCCCCCCccchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHHHH
Confidence 211 1 12222 2233445555555555442 23468999999999998533 3 5555555443334433344
Q ss_pred HHHhcccccccccchhhhH
Q 003702 322 FVSSGLKTNITTIQGLQSW 340 (801)
Q Consensus 322 F~~~G~~idl~~l~~~~~~ 340 (801)
-..+|...+-..+.+..+.
T Consensus 288 Gl~vG~t~~A~~FL~~~tl 306 (399)
T TIGR03136 288 GLVLGVLCEASTLLDPRVS 306 (399)
T ss_pred HHHhhhhccHHhhCChHHH
Confidence 5678888877666654443
No 133
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=66.09 E-value=19 Score=34.69 Aligned_cols=88 Identities=16% Similarity=0.147 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhccCC---CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchh--hh-HHHHHHHHHHHHHHHHHH
Q 003702 284 ALFGAFITGVLVPKE---GPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGL--QS-WGFLVLVIVTACFGKIVG 357 (801)
Q Consensus 284 ~~lgaf~aGl~l~~~---~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~--~~-~~~~~~~i~~~~~~K~i~ 357 (801)
..-|+++.|+++.+- +|....+......+..++.+-+|...+|++.-...+... .. +....+..++.++.-.+.
T Consensus 23 ~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~ 102 (154)
T TIGR01625 23 NAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLV 102 (154)
T ss_pred ccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 355788888887752 333344445556666788888999999999875433321 12 222223333444444566
Q ss_pred HHHHHHHcCCChHH
Q 003702 358 TVAMSLACRIPFKE 371 (801)
Q Consensus 358 ~~l~~~~~~~~~~~ 371 (801)
.++..+++|+++..
T Consensus 103 ~~~~~~~~~~~~~~ 116 (154)
T TIGR01625 103 AVALIKLLRINYAL 116 (154)
T ss_pred HHHHHHHhCCCHHH
Confidence 66777788998753
No 134
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=65.04 E-value=2.5e+02 Score=31.91 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHH
Q 003702 171 FPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWIL 206 (801)
Q Consensus 171 ~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~i~l 206 (801)
.|++....+.+|+.+.+.--.+++++.+.|..+.++
T Consensus 117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~L 152 (423)
T PF02040_consen 117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLL 152 (423)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhccc
Confidence 577888888888765555678889999999988765
No 135
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=64.47 E-value=21 Score=36.49 Aligned_cols=63 Identities=16% Similarity=0.098 Sum_probs=51.1
Q ss_pred EEEEeEEecCCC-ChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEEec
Q 003702 538 FIRPMTAISAMH-GMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVD 608 (801)
Q Consensus 538 ~v~~~~~vs~~~-~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgilvd 608 (801)
...++|.+.|.+ ...++|.+.+.+.+.|.|++|-. .+........+..++-++...||-++..
T Consensus 15 ~~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS--------~gvt~~~~~~~v~~ik~~~~lPvilfP~ 78 (240)
T COG1646 15 GKRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGS--------DGVTEENVDNVVEAIKERTDLPVILFPG 78 (240)
T ss_pred cceEEEEeCcccccccHHHHHHHHHcCCCEEEECCc--------ccccHHHHHHHHHHHHhhcCCCEEEecC
Confidence 457889999999 99999999999999999999953 2223335777888888899999988743
No 136
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=62.16 E-value=2.3e+02 Score=30.45 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=35.5
Q ss_pred cccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhh
Q 003702 51 RPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGK 121 (801)
Q Consensus 51 ~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l~~~~~ 121 (801)
+-+|...-.|-.++|+++.-+=+.. .. .+..-.+.+.-.++|.-.+|+-.|+..+-+..-
T Consensus 244 ~LfgvsfaLGAffaGMvL~eselsh--ra---------a~~slpLrdaFaVlFFvsVGmlf~P~~l~~~pl 303 (408)
T COG4651 244 ELFGVSFALGAFFAGMVLAESELSH--RA---------AEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPL 303 (408)
T ss_pred eeeccchhHHHHHHHHHhcchhhhH--HH---------HHhccCHHHHHHHHHHHHhhhhcCcHHhhcchH
Confidence 3456666677777777776432211 11 112222445556667778899999988876653
No 137
>COG0679 Predicted permeases [General function prediction only]
Probab=61.63 E-value=1.6e+02 Score=31.90 Aligned_cols=107 Identities=17% Similarity=0.238 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003702 283 HALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMS 362 (801)
Q Consensus 283 ~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~ 362 (801)
-+++.-...|..+.+.....++-.+-+..++..+.+|..+...=.+.+.+... .+.......+..++.=+...++..
T Consensus 10 lpi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 86 (311)
T COG0679 10 LPIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLA---DLGLIVASLVATLLAFFLLALIGR 86 (311)
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777777666677777778899999999999766555555554431 233344444445555555566666
Q ss_pred HHcCCChHHH--HHHHHHHhhhhHHHHHHHHh
Q 003702 363 LACRIPFKEA--LALGFLMNTKGLVELIVLNI 392 (801)
Q Consensus 363 ~~~~~~~~~~--~~lgl~l~~kG~~~l~l~~~ 392 (801)
+..+.+.+++ ...+...+.-|-+.+-++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~ 118 (311)
T COG0679 87 FLFKLDKRETVIFALASAFPNIGFLGLPVALS 118 (311)
T ss_pred HHhccchhhHHHHHHHHHhcccchhhHHHHHH
Confidence 6777777655 33444455566665544443
No 138
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=60.99 E-value=44 Score=32.78 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=30.7
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEec
Q 003702 625 VITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFL 660 (801)
Q Consensus 625 ~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v 660 (801)
+|+|.+.||.|+--++.++.+...+-+.++.++++-
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id 36 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVD 36 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEec
Confidence 578999999999999999999887656778888774
No 139
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=60.12 E-value=2.5e+02 Score=30.34 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=76.6
Q ss_pred hHHHHHHHHHhhccC-CCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003702 283 HALFGAFITGVLVPK-EGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAM 361 (801)
Q Consensus 283 ~~~lgaf~aGl~l~~-~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~ 361 (801)
++.+=|.++|+++.- +-+....+.+-++.+. +...|+-...+|+.++...... .+.......+..++.-.+.++..
T Consensus 182 nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg-~~~~plaLl~lG~~l~~~~~~~--~~~~~~~~~~~klil~P~i~~~~ 258 (321)
T TIGR00946 182 FPPLWAPLLSVILSLVGFKMPGLILKSISILS-GATTPMALFSLGLALSPRKIKL--GVRDAILALIVRFLVQPAVMAGI 258 (321)
T ss_pred CCChHHHHHHHHHHHHhhcCcHHHHHHHHHHH-HHHHHHHHHHHHHhhChhhhcc--ChHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666665542 1223455666666665 8889999999999988766542 33334444455555555666777
Q ss_pred HHHcCCChHHH--HHHHHHHhhhhHHHHHHHHhhcccCcCChhHHHHHHHHHHHHHHhHHHHHHHH
Q 003702 362 SLACRIPFKEA--LALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPLVMAV 425 (801)
Q Consensus 362 ~~~~~~~~~~~--~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~pl~~~l 425 (801)
+...+.+.... ..+-.. .|-+....+++ .+.|. +++..+..+....+.++++-|+.-++
T Consensus 259 ~~~~~l~~~~~~~~vl~aa-~P~a~~~~i~A---~~y~~-~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 259 SKLIGLRGLELSVAILQAA-LPGGAVAAVLA---TEYEV-DVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HHHhCCChHHHHHHHHHHc-CChhhHHHHHH---HHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777754332 222221 23333333333 33333 45555555555666677777776554
No 140
>TIGR00930 2a30 K-Cl cotransporter.
Probab=58.38 E-value=4.9e+02 Score=33.06 Aligned_cols=133 Identities=8% Similarity=0.112 Sum_probs=78.0
Q ss_pred CCCceEEEEeccCCChhHHHHHHHHhcCCCCCCCcEEEEEEeeeccCCchhhHHHhhhccCCCCccCCCCCCccchHHHH
Q 003702 448 NSELRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVA 527 (801)
Q Consensus 448 ~~elrILv~v~~~~~~~~li~Ll~~~~~~~~~~p~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 527 (801)
+-.-++|+.+.+|++-+.++++...+... +. -..+.|+++-+.+... .+ .++..+.
T Consensus 573 nwrPqiLvl~~~p~~~~~Ll~f~~~l~~~---~g-l~i~~~v~~~~~~~~~----~~----------------~~~~~~~ 628 (953)
T TIGR00930 573 NWRPQCLVLTGPPVCRPALLDFASQFTKG---KG-LMICGSVIQGPRLECV----KE----------------AQAAEAK 628 (953)
T ss_pred ccCCeEEEEeCCCcCcHHHHHHHHHhccC---Cc-EEEEEEEecCchhhhH----HH----------------HHHHHHH
Confidence 34468999999999999999999999743 34 3566688875422110 00 0111122
Q ss_pred HHHHhhccceEEEEeEEecCCCChHHHHHHHHHhc-----CccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCc
Q 003702 528 FEAFRQLSRVFIRPMTAISAMHGMHEDICSSAERK-----RAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCS 602 (801)
Q Consensus 528 f~~~~~~~~v~v~~~~~vs~~~~m~~~I~~~A~~~-----~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcs 602 (801)
.+.+-++.+++--..+.++ +++.+++.++.+-. +.+.++|+|...|+.+... ....+-.+.++.. ++-..
T Consensus 629 ~~~~~~~~~~~~f~~~~~~--~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~--~~~~y~~~i~~a~-~~~~~ 703 (953)
T TIGR00930 629 IQTWLEKNKVKAFYAVVVA--DDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPR--AWETYIGIIHDAF-DAHLA 703 (953)
T ss_pred HHHHHHHhCCCeEEEEecC--CCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccch--hHHHHHHHHHHHH-HcCCc
Confidence 2222222233332223334 68999999998875 4799999999888754421 1123333443443 45566
Q ss_pred eEEEecCCC
Q 003702 603 VGILVDRGL 611 (801)
Q Consensus 603 Vgilvdrg~ 611 (801)
|.|+ |+.
T Consensus 704 v~i~--r~~ 710 (953)
T TIGR00930 704 VVVV--RNS 710 (953)
T ss_pred EEEE--ccc
Confidence 6665 653
No 141
>PRK10711 hypothetical protein; Provisional
Probab=58.33 E-value=2.3e+02 Score=29.28 Aligned_cols=83 Identities=11% Similarity=0.185 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCChhHHHHHHHHHHHHHHhH
Q 003702 339 SWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFIT 418 (801)
Q Consensus 339 ~~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~~v~~~lv~t~i~ 418 (801)
.|..+.+-+.++.+.-++++++.++.++.+.. +...|.+|....-+...+..+.|-+.+-.-..++++-++-..+.
T Consensus 87 ~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~----~~~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g 162 (231)
T PRK10711 87 RWKSIISICFIGSVVAMVTGTAVALWMGATPE----IAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFG 162 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 34444444555666667778888888888654 33445789987777777777777765444444445555555555
Q ss_pred HHHHHHH
Q 003702 419 TPLVMAV 425 (801)
Q Consensus 419 ~pl~~~l 425 (801)
+++.+++
T Consensus 163 ~~llk~~ 169 (231)
T PRK10711 163 HTLLNAM 169 (231)
T ss_pred HHHHHHc
Confidence 6666654
No 142
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=58.03 E-value=26 Score=34.57 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=42.4
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEeccCCCCcccccccCCCCCCcccccHHHHHHHHHhhc
Q 003702 625 VITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVKQKF 695 (801)
Q Consensus 625 ~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 695 (801)
+|+|.+.||+|.-..|.+..++.++.+.+++++++-..-. .+...+.++++++.+++
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~--------------~~s~~~~~~v~~~~~~~ 57 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLR--------------EESDEEAEFVEEICEQL 57 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STS--------------CCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCC--------------cccchhHHHHHHHHHhc
Confidence 6899999999999999999999999999999999864322 12233557788777765
No 143
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=57.17 E-value=24 Score=38.10 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=29.8
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEecc
Q 003702 625 VITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLP 661 (801)
Q Consensus 625 ~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v~ 661 (801)
++++.|.||+|+--.|.+|.+.....+..+.++++-.
T Consensus 39 ~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDT 75 (312)
T PRK12563 39 KPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDT 75 (312)
T ss_pred CcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCC
Confidence 5688999999999999999998755455677887643
No 144
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=57.05 E-value=11 Score=31.83 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=26.9
Q ss_pred EEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEe
Q 003702 626 ITVLFFGGNDDQEALAYGARMAEHPGISLNVVRF 659 (801)
Q Consensus 626 i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~ 659 (801)
|++++.||+|+..++.++.+.+ ..+.+++++++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~ 33 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVV 33 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEe
Confidence 5789999999999999999987 44667776654
No 145
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=56.99 E-value=27 Score=33.76 Aligned_cols=80 Identities=23% Similarity=0.199 Sum_probs=46.8
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEEEeccCCCCcccccccCCCCCCcccccHHHHHHHHHhhccCCCceEEEEEEec---C
Q 003702 634 NDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVKQKFKNLEAFKYEERWIK---N 710 (801)
Q Consensus 634 ~ddreaL~~a~rma~~~~v~ltvv~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~---~ 710 (801)
+.|+|+|+.|+++++..+.+++++-+=+..+ .++.+++...+. .-+++...+--.. +
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G~~~~-------------------~~~~l~~~l~~~-G~d~v~~~~~~~~~~~~ 74 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLGPAEE-------------------AAEALRKALAKY-GADKVYHIDDPALAEYD 74 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEETCCC-------------------HHHHHHHHHHST-TESEEEEEE-GGGTTC-
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEecchh-------------------hHHHHhhhhhhc-CCcEEEEecCccccccC
Confidence 7899999999999999999999886541111 233444433322 2234433332111 2
Q ss_pred hhHHHHHHhccc---CCcEEEEccCC
Q 003702 711 TSETVDVLGEFN---KCHLFLVGRMP 733 (801)
Q Consensus 711 ~~e~~~~l~~~~---~~DLvivGr~~ 733 (801)
......++.+.- ++|+|++|.+.
T Consensus 75 ~~~~a~~l~~~~~~~~~~lVl~~~t~ 100 (164)
T PF01012_consen 75 PEAYADALAELIKEEGPDLVLFGSTS 100 (164)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEESSH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 334444554443 39999999986
No 146
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=56.55 E-value=2.3e+02 Score=28.97 Aligned_cols=35 Identities=11% Similarity=-0.003 Sum_probs=24.1
Q ss_pred ChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003702 112 DPKSIRRAGKKALSIALGGISLPFALGIGTSFALR 146 (801)
Q Consensus 112 d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~ 146 (801)
..+.+||++++.+.-...+.++.++.+..++++++
T Consensus 69 ~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lg 103 (215)
T PF04172_consen 69 QRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLG 103 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 56778888887776666677666666665555554
No 147
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=54.89 E-value=40 Score=35.43 Aligned_cols=109 Identities=18% Similarity=0.092 Sum_probs=67.0
Q ss_pred EeccCCcChHHHHHHHHHHhh-CCCeEEEEEEeccCCCCcccccccCCCCCCcccccHHHHHHHHHhhccCCCceEEEE-
Q 003702 628 VLFFGGNDDQEALAYGARMAE-HPGISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVKQKFKNLEAFKYEE- 705 (801)
Q Consensus 628 v~f~Gg~ddreaL~~a~rma~-~~~v~ltvv~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e- 705 (801)
+++.=.+.|+-|++.|.|+.+ ..+.++|++.+=++.. ++.+.+.... +-++....+
T Consensus 31 v~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a--------------------~~~lr~aLAm--GaDraili~d 88 (260)
T COG2086 31 VPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQA--------------------EEALREALAM--GADRAILITD 88 (260)
T ss_pred CCcccChhhHHHHHHHHHhhccCCCceEEEEEecchhh--------------------HHHHHHHHhc--CCCeEEEEec
Confidence 344446899999999999999 6899999998764322 3345443333 223332222
Q ss_pred --EEecChhHHHHHHhccc---CCcEEEEccCC---Cchhh-cccccCCCCCcccccccccc
Q 003702 706 --RWIKNTSETVDVLGEFN---KCHLFLVGRMP---VSRAA-AMLKVKSDCPELGPVGSLLI 758 (801)
Q Consensus 706 --~~v~~~~e~~~~l~~~~---~~DLvivGr~~---~~~~~-~gl~~w~e~~eLG~igd~la 758 (801)
..-.|+..|..+|.+.. ++|||+.|+.. ++.++ ..+.+|-..|-+.-+-++-.
T Consensus 89 ~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~~ 150 (260)
T COG2086 89 RAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIEI 150 (260)
T ss_pred ccccCccHHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEEE
Confidence 12345556666666533 28999999997 33333 24445555577776665553
No 148
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=54.71 E-value=1.3e+02 Score=32.97 Aligned_cols=92 Identities=14% Similarity=0.037 Sum_probs=54.6
Q ss_pred HHHHHccc-CCChhHHHHHHHHhhCccccCCcccccccccCCCcHH---HHH-HHHHHHHHHHHHHHhhc-cChhHHHhh
Q 003702 46 LAFVLRPL-RQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLT---VLD-TLANLGLLFFLFLVGLE-MDPKSIRRA 119 (801)
Q Consensus 46 ~~~ll~~l-~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~---~l~-~l~~~gl~~llF~~Gle-~d~~~l~~~ 119 (801)
++.+++.+ ++|..+-.++.|+++-- +|..+ ++..+ ... ++..--...+|+-+|+. +|++++.+.
T Consensus 194 ~g~l~~~~~~Ih~~v~mII~~vi~k~--~gllp--------~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a 263 (347)
T TIGR00783 194 AGGLLKSFPGIPAYAFMILIAAALKA--FGLVP--------KEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAA 263 (347)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHH--hCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHH
Confidence 34444444 68999999999999873 34333 22222 222 33333344455557886 899999988
Q ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003702 120 G-KKALSIALGGISLPFALGIGTSFALRA 147 (801)
Q Consensus 120 ~-~~~~~ia~~~~~ip~~~~~~~~~~l~~ 147 (801)
. .+.+.+.+.+++--.+.++.++.+++.
T Consensus 264 ~t~~~vviiv~~Vlg~ii~s~lvGKllG~ 292 (347)
T TIGR00783 264 LSWQFVVICLSVVVAMILGGAFLGKLMGM 292 (347)
T ss_pred hchhHhhhHHHHHHHHHHHHHHHHHHhCC
Confidence 7 444445544544445555566666654
No 149
>COG2035 Predicted membrane protein [Function unknown]
Probab=54.29 E-value=2.9e+02 Score=29.21 Aligned_cols=46 Identities=26% Similarity=0.539 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhC--ccccCC
Q 003702 28 ALPLAILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLG--PSALGR 75 (801)
Q Consensus 28 ~l~~~l~~i~lil~~~~~~~~ll~~l~~P~ii~~ilaGiilG--P~~lg~ 75 (801)
=.|+..-.+.-++.+++++.++++. .|.++-...+|+++| |+.++.
T Consensus 58 Li~l~~G~~~~i~~~a~ii~~ll~~--yp~~t~~fF~GlI~~sVp~llk~ 105 (276)
T COG2035 58 LIPLGIGMLLGIFLFAKIIEYLLEN--YPVPTLAFFAGLILGSVPSLLKE 105 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777788888888877 566666778899998 444433
No 150
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=53.87 E-value=36 Score=36.54 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=28.9
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEecc
Q 003702 625 VITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLP 661 (801)
Q Consensus 625 ~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v~ 661 (801)
+.++.|.||+|+--.|.++.+.-...+..+.++++-.
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDT 57 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDT 57 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEec
Confidence 4567899999999999999988654456777887743
No 151
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=53.87 E-value=40 Score=36.39 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=30.0
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEecc
Q 003702 624 SVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLP 661 (801)
Q Consensus 624 ~~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v~ 661 (801)
.++++.|.||+|+--.|.+|.+.-...+..+.++++-.
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDT 65 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDT 65 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeC
Confidence 37899999999999999999887554456677776643
No 152
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=51.96 E-value=16 Score=39.65 Aligned_cols=133 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChHHHHHHHHHHhhhhHHH
Q 003702 312 LVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLA-----CRIPFKEALALGFLMNTKGLVE 386 (801)
Q Consensus 312 ~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~-----~~~~~~~~~~lgl~l~~kG~~~ 386 (801)
+.++++=|+.|.-+|..+|+..+. .-+...++-..+=++-+.....+..+ .+++.+|+-.+|.+=+.-|-.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLl---anP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTs 207 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLL---ANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHh---hCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchH
Q ss_pred HHHHHhhccc--CcCChhHHHHHHHHHHHHHHhHHHHHHHHcccccccchhhhccccccCCCCCCCceEEEEe
Q 003702 387 LIVLNIGKDR--KVLNDQTFAIMVLMAVFTTFITTPLVMAVYKPNQKTSKVAYKHRTIKRKDPNSELRIFACF 457 (801)
Q Consensus 387 l~l~~~~~~~--~~i~~~~~~~~v~~~lv~t~i~~pl~~~l~~~~~~~~~~~~~~r~i~~~~~~~elrILv~v 457 (801)
+.+.+..-.. |.|.-..|+-| -+.-++-||+.+.+.-+++|.. +. -|..+-....||+-|+
T Consensus 208 IfvsskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I-----~M-~~lr~VSk~eKIlFPi 270 (433)
T PRK15475 208 IYLSGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTETERKI-----RM-VQLRTVSKREKILFPV 270 (433)
T ss_pred HHhHhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCc-----cC-CCCCCCCccchhHHHH
No 153
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=51.79 E-value=2.9e+02 Score=28.53 Aligned_cols=36 Identities=6% Similarity=-0.088 Sum_probs=25.8
Q ss_pred cChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003702 111 MDPKSIRRAGKKALSIALGGISLPFALGIGTSFALR 146 (801)
Q Consensus 111 ~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~ 146 (801)
-+.+.+||+++..+.-.+.|.++.++.+..++.+++
T Consensus 84 ~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lg 119 (232)
T PRK04288 84 KKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQ 119 (232)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 357788888888777767777777766666666654
No 154
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=51.73 E-value=3.4e+02 Score=29.20 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhc
Q 003702 315 GLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGK 394 (801)
Q Consensus 315 ~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~ 394 (801)
.+++=.|++.++...|+..+.....| ++..+...+...+..+..+..++.+..+-...++ -|..|-.+.-....++
T Consensus 276 tv~lY~~v~vias~Ad~~~i~taP~~---i~~gf~il~~h~~v~f~~~KlF~~dL~~i~~Asl-AniGG~~sAp~~A~A~ 351 (384)
T COG5505 276 TVLLYLFVVVIASPADLRLIVTAPLI---ILFGFIILISHLAVSFAAGKLFRVDLEEILLASL-ANIGGPTSAPAMAIAK 351 (384)
T ss_pred HHHHHHHHHHhccchhHHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hccCCccchhHHHhhc
Confidence 56666789999999999888753333 3333344455666677788888888777655555 6778878877777777
Q ss_pred ccCcCC
Q 003702 395 DRKVLN 400 (801)
Q Consensus 395 ~~~~i~ 400 (801)
+...+.
T Consensus 352 nr~lv~ 357 (384)
T COG5505 352 NRELVA 357 (384)
T ss_pred Cchhcc
Confidence 655444
No 155
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=51.44 E-value=33 Score=37.04 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=42.2
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCe-EEEEEEeccCCCCcccccccCCCCCCcccccHHHHHHHHHhhc
Q 003702 623 SSVITVLFFGGNDDQEALAYGARMAEHPGI-SLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVKQKF 695 (801)
Q Consensus 623 ~~~i~v~f~Gg~ddreaL~~a~rma~~~~v-~ltvv~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 695 (801)
..+|+|-|.||+|.--.|.++.+.|+..+- .+.|+.+- -|.+....-++++|.+..+
T Consensus 27 f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD----------------~E~QYs~TidyV~em~~~~ 84 (407)
T COG3969 27 FPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFID----------------WEAQYSCTIDYVQEMRESY 84 (407)
T ss_pred CCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEc----------------chhhhhhHHHHHHHHHhcc
Confidence 459999999999999999999999866555 68877653 2223344457788777754
No 156
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=51.08 E-value=2.7e+02 Score=27.82 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Q 003702 343 LVLVIVTACFGKIVGTVAMSLACRI 367 (801)
Q Consensus 343 ~~~~i~~~~~~K~i~~~l~~~~~~~ 367 (801)
..+.++..+++-++|+++..+.+|.
T Consensus 161 ~~~~~~~t~v~~~iG~~iG~kllkK 185 (189)
T TIGR02185 161 AVIMIVLTAVAGIAGVLIGKKLLKK 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666778888888777653
No 157
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=50.81 E-value=3e+02 Score=28.35 Aligned_cols=36 Identities=14% Similarity=0.070 Sum_probs=24.7
Q ss_pred cChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003702 111 MDPKSIRRAGKKALSIALGGISLPFALGIGTSFALR 146 (801)
Q Consensus 111 ~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~ 146 (801)
-..+.+||+++....-...|.++.++.+..++.+++
T Consensus 78 ~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg 113 (226)
T TIGR00659 78 KQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLG 113 (226)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 467788888887776666666666666666665554
No 158
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=50.62 E-value=18 Score=39.42 Aligned_cols=133 Identities=14% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChHHHHHHHHHHhhhhHHH
Q 003702 312 LVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLA-----CRIPFKEALALGFLMNTKGLVE 386 (801)
Q Consensus 312 ~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~-----~~~~~~~~~~lgl~l~~kG~~~ 386 (801)
+.++++=|+.|.-+|..+|+..+. .-+...++-..+=++-+.....+..+ .+++.+|+-.+|.+=+.-|-.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLl---anP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTs 207 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLL---ANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHh---hCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchH
Q ss_pred HHHHHhhccc--CcCChhHHHHHHHHHHHHHHhHHHHHHHHcccccccchhhhccccccCCCCCCCceEEEEe
Q 003702 387 LIVLNIGKDR--KVLNDQTFAIMVLMAVFTTFITTPLVMAVYKPNQKTSKVAYKHRTIKRKDPNSELRIFACF 457 (801)
Q Consensus 387 l~l~~~~~~~--~~i~~~~~~~~v~~~lv~t~i~~pl~~~l~~~~~~~~~~~~~~r~i~~~~~~~elrILv~v 457 (801)
+.+.+..-.. |.|.-..|+-| -+.-++-||+.+.+.-+++|.. +. -|..+-....||+-|+
T Consensus 208 IfvsskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I-----~M-~~lr~VSk~eKIlFPi 270 (433)
T PRK15476 208 IYLSGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTEKERKI-----RM-VQLRTVSKREKILFPV 270 (433)
T ss_pred HHhHhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCc-----cC-CCCCCCCccchhHHHH
No 159
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=50.61 E-value=18 Score=39.42 Aligned_cols=133 Identities=14% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChHHHHHHHHHHhhhhHHH
Q 003702 312 LVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLA-----CRIPFKEALALGFLMNTKGLVE 386 (801)
Q Consensus 312 ~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~-----~~~~~~~~~~lgl~l~~kG~~~ 386 (801)
+.++++=|+.|.-+|..+|+..+. .-+...++-..+=++-+.....+..+ .+++.+|+-.+|.+=+.-|-.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLl---anP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTs 207 (433)
T PRK15477 131 IGSGVAPLVIFMGVGAMTDFGPLL---ANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHh---hCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchH
Q ss_pred HHHHHhhccc--CcCChhHHHHHHHHHHHHHHhHHHHHHHHcccccccchhhhccccccCCCCCCCceEEEEe
Q 003702 387 LIVLNIGKDR--KVLNDQTFAIMVLMAVFTTFITTPLVMAVYKPNQKTSKVAYKHRTIKRKDPNSELRIFACF 457 (801)
Q Consensus 387 l~l~~~~~~~--~~i~~~~~~~~v~~~lv~t~i~~pl~~~l~~~~~~~~~~~~~~r~i~~~~~~~elrILv~v 457 (801)
+.+.+..-.. |.|.-..|+-| -+.-++-||+.+.+.-+++|.. +. -|..+-....||+-|+
T Consensus 208 IfvsskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I-----~M-~~lr~VSk~eKIlFPi 270 (433)
T PRK15477 208 IYLSGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTEKERKI-----RM-VQLRTVSKREKILFPV 270 (433)
T ss_pred HHhHhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCc-----cC-CCCCCCCccchhHHHH
No 160
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=50.23 E-value=1.8e+02 Score=27.61 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=16.4
Q ss_pred HHHHHHH--HhcccccccccchhhhHHHHHHHHHHHH
Q 003702 317 LLPLYFV--SSGLKTNITTIQGLQSWGFLVLVIVTAC 351 (801)
Q Consensus 317 ~~plfF~--~~G~~idl~~l~~~~~~~~~~~~i~~~~ 351 (801)
-+|+||+ .+|.-..++.+.. +.|..++++++..+
T Consensus 68 ~m~LfFVPagVGim~~~~ll~~-~~~~Il~~ivvSTl 103 (141)
T PRK04125 68 NIGFLFVPSGISVINSLGVMSQ-YPVQIIGVIIVATI 103 (141)
T ss_pred HHHHHHhhhHhHHHHhHHHHHH-HHHHHHHHHHHHHH
Confidence 3577887 4455444554543 34443333333333
No 161
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=48.81 E-value=3.2e+02 Score=28.13 Aligned_cols=83 Identities=11% Similarity=0.160 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCChhHHHHHHHHHHHHHHhH
Q 003702 339 SWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFIT 418 (801)
Q Consensus 339 ~~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~~v~~~lv~t~i~ 418 (801)
.|..+...+.++.+.-+..+++.++.++.+.. +.. .+.+|....-+-..+..+.|-..+-.-...+++-++-..+.
T Consensus 86 ~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~--i~~--Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g 161 (226)
T TIGR00659 86 YWKEIILNVAVGSVIAIISGTLLALLLGLGPE--IIA--SLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFG 161 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHH--HhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555566777788888888633 333 45789887777777777777654444444445555555555
Q ss_pred HHHHHHH
Q 003702 419 TPLVMAV 425 (801)
Q Consensus 419 ~pl~~~l 425 (801)
+++.+++
T Consensus 162 ~~ll~~~ 168 (226)
T TIGR00659 162 PMVLRYF 168 (226)
T ss_pred HHHHHHc
Confidence 5666654
No 162
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=48.63 E-value=2.4e+02 Score=26.75 Aligned_cols=103 Identities=15% Similarity=0.035 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCh---hHHHHHHHHhhCccccCCcccccccccCCCcHHHH-HHHHHHHHHHHHH
Q 003702 30 PLAILQICLVVLLTRLLAFVLRPLRQPR---VIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVL-DTLANLGLLFFLF 105 (801)
Q Consensus 30 ~~~l~~i~lil~~~~~~~~ll~~l~~P~---ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l-~~l~~~gl~~llF 105 (801)
..++.|+++++.+..+...+.+-+++|- ++|+++.=+.+. ++... +..-.... -.+.++++.|+==
T Consensus 7 ~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L~---~~~vk-------~~~v~~~a~~LL~~m~LfFVPa 76 (141)
T PRK04125 7 YSFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLLC---TKVVK-------LEQVESLGTALTNNIGFLFVPS 76 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH---hCCcC-------HHHHHHHHHHHHHHHHHHHhhh
Confidence 3578899999999888888888777653 344433211111 12221 00001111 2234444444444
Q ss_pred HHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 003702 106 LVGLEMDPKSIRRAGKKALSIALGGISLPFALGIGTS 142 (801)
Q Consensus 106 ~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~ 142 (801)
.+|+=...+.+++++.+.+...+.+.++.++.+..+.
T Consensus 77 gVGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~ 113 (141)
T PRK04125 77 GISVINSLGVMSQYPVQIIGVIIVATILLLACTGLFS 113 (141)
T ss_pred HhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777766666666666655544333
No 163
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=48.25 E-value=89 Score=30.48 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=30.3
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCC--CeEEEEEEecc
Q 003702 625 VITVLFFGGNDDQEALAYGARMAEHP--GISLNVVRFLP 661 (801)
Q Consensus 625 ~i~v~f~Gg~ddreaL~~a~rma~~~--~v~ltvv~~v~ 661 (801)
||+|.+.||.|.--++.++.+..++. +.+++.+++-.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~ 39 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDE 39 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEEC
Confidence 58999999999999999998877654 67788777653
No 164
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=46.80 E-value=1.1e+02 Score=32.79 Aligned_cols=111 Identities=13% Similarity=0.118 Sum_probs=68.6
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEEecCCCCCC
Q 003702 535 SRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDRGLGGS 614 (801)
Q Consensus 535 ~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgilvdrg~~~~ 614 (801)
++..|-.|-... ..+.+.+++.|++.++..||.-....-...+ ...+.....+..+++++||.+=-|.|.. .
T Consensus 16 ~~yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~-----~~~~~~~~~~~a~~~~vpv~lHlDH~~~-~ 87 (281)
T PRK06806 16 ENYGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNHSP-----LHLIGPLMVAAAKQAKVPVAVHFDHGMT-F 87 (281)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhccCC-----hHHHHHHHHHHHHHCCCCEEEECCCCCC-H
Confidence 344444555543 4788999999999999999988764432212 1236667778899999999999999753 0
Q ss_pred Cccc-cCCcceEEEEeccC-CcChHHHHHHHHHHh---hCCCeEE
Q 003702 615 THVA-ASNVSSVITVLFFG-GNDDQEALAYGARMA---EHPGISL 654 (801)
Q Consensus 615 ~~~~-~~~~~~~i~v~f~G-g~ddreaL~~a~rma---~~~~v~l 654 (801)
.... .-+.... .|-+++ ..+++|-++.++++. +.-++.+
T Consensus 88 e~i~~Al~~G~t-sVm~d~s~~~~~eni~~t~~v~~~a~~~gv~v 131 (281)
T PRK06806 88 EKIKEALEIGFT-SVMFDGSHLPLEENIQKTKEIVELAKQYGATV 131 (281)
T ss_pred HHHHHHHHcCCC-EEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 0000 0000112 223445 357788888777664 4445443
No 165
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=46.03 E-value=2.4e+02 Score=34.77 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhcc
Q 003702 97 NLGLLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITA 170 (801)
Q Consensus 97 ~~gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts 170 (801)
.+-+-++....|++.|...+.+ +.............-++.+...+.+..- ++..++.+|.+++.-.
T Consensus 313 ~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~-------p~~~~l~l~~lm~~kg 378 (769)
T KOG1650|consen 313 GLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKL-------PLRDSLALGLLMSTKG 378 (769)
T ss_pred HHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-------chhHHHHHHHHHHhhh
Confidence 4556667788899999999988 2222222222222233334444442221 1256788888777544
No 166
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=45.88 E-value=2.7e+02 Score=30.22 Aligned_cols=92 Identities=22% Similarity=0.278 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 003702 284 ALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGL-QSWGFLVLVIVTACFGKIVGTVAMS 362 (801)
Q Consensus 284 ~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~-~~~~~~~~~i~~~~~~K~i~~~l~~ 362 (801)
.++.+.++|...|.-+..+..+. .|... .+...+.|...|++++...+... ..|...+......++.=.+..+...
T Consensus 6 ~l~~ai~la~~~P~~g~~~~~~~--~~~~~-~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~ 82 (313)
T PF13593_consen 6 GLLLAILLAYLFPAPGAAGGVIK--PEYVI-KYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLS 82 (313)
T ss_pred HHHHHHHHHHHcCcccccCCccc--hhhhH-HHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888885333322221 11222 33355667778999998877643 2454444444444444444444444
Q ss_pred HHcCCChHHHHHHHHH
Q 003702 363 LACRIPFKEALALGFL 378 (801)
Q Consensus 363 ~~~~~~~~~~~~lgl~ 378 (801)
...+....+.+..|+.
T Consensus 83 ~l~~~~~~~~l~~Gl~ 98 (313)
T PF13593_consen 83 RLFPAFLPPELALGLL 98 (313)
T ss_pred HHhhccCCHHHHHHHH
Confidence 4443222233444543
No 167
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=45.28 E-value=78 Score=29.74 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcC-CCceEEEecCCC
Q 003702 549 HGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHA-SCSVGILVDRGL 611 (801)
Q Consensus 549 ~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~a-pcsVgilvdrg~ 611 (801)
....+.|.+++++.+++.||+|...+. ||+........+.+.+++-++. ++||-. +|..+
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~--~G~~~~~~~~v~~f~~~L~~~~~~ipV~~-~DEr~ 97 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNM--DGSESEQARRVRKFAEELKKRFPGIPVIL-VDERL 97 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBC--TSSC-CCHHHHHHHHHHHHHHH-TSEEEE-EECSC
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCccc--CCCccHHHHHHHHHHHHHHHhcCCCcEEE-ECCCh
Confidence 578899999999999999999987553 5654444456788888888887 899854 66644
No 168
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=45.18 E-value=3.6e+02 Score=27.60 Aligned_cols=83 Identities=12% Similarity=0.244 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCChhHHHHHHHHHHHHHHhH
Q 003702 339 SWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFIT 418 (801)
Q Consensus 339 ~~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~~~v~~~lv~t~i~ 418 (801)
.|..++..+..+.+.-+..+++.++.++.+.. + ...+.+|....-+-..+..+.|-..+-.-..++++-++-..+.
T Consensus 76 ~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~--~--~~Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g 151 (215)
T PF04172_consen 76 NWIPILVGVLVGSLVSIFSAVLLARLLGLSPE--I--ILSLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLG 151 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--H--HHHHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhH
Confidence 44444455555666667777888888888654 2 3335688887777777777777655444444444445555555
Q ss_pred HHHHHHH
Q 003702 419 TPLVMAV 425 (801)
Q Consensus 419 ~pl~~~l 425 (801)
+++.+++
T Consensus 152 ~~llk~~ 158 (215)
T PF04172_consen 152 PPLLKLL 158 (215)
T ss_pred HHHHhHc
Confidence 5666553
No 169
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=45.13 E-value=4.4e+02 Score=28.66 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhh
Q 003702 262 YVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQS 339 (801)
Q Consensus 262 ~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~ 339 (801)
-+.+-+.....++++. =.-.+.+|.+++|-.+.+ ...-+++.+..+.-..++..-+.-..+|...+-+.+.+..+
T Consensus 194 Ki~Fpivv~~i~~ll~--P~a~pLig~Lm~GnllrE-sGv~~rl~~taqn~l~nivTifLGl~vG~~~~A~~fL~~~t 268 (354)
T TIGR01109 194 KILFPIVLLLLVALLI--PKALPLVGMLMFGNLMRE-SGVVERLSKTASNELLNIVTILLGLSVGAKMRADKFLTPQT 268 (354)
T ss_pred hhHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChHH
Confidence 3444555555554442 234689999999999984 33334444433332223333233457787777666655333
No 170
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=43.67 E-value=4.9e+02 Score=28.75 Aligned_cols=87 Identities=10% Similarity=0.130 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhhccCCCCc-----hHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHHHHH
Q 003702 283 HALFGAFITGVLVPKEGPF-----AGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVG 357 (801)
Q Consensus 283 ~~~lgaf~aGl~l~~~~~~-----~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~ 357 (801)
++.+=+.++|+++.--++. ...+.+-++.+. ....|+-.+.+|..+..........+......++..++.-.+.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg-~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLG-AAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLI 322 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHH-hhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 4555556666665422222 245555666665 7889999999999877543332122333333455566666666
Q ss_pred HHHHHHHcCCChH
Q 003702 358 TVAMSLACRIPFK 370 (801)
Q Consensus 358 ~~l~~~~~~~~~~ 370 (801)
++...+.++++..
T Consensus 323 ~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 323 GIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHCCCHH
Confidence 7777777776544
No 171
>COG0679 Predicted permeases [General function prediction only]
Probab=43.09 E-value=4.6e+02 Score=28.30 Aligned_cols=138 Identities=14% Similarity=0.188 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHhhccC-CCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 003702 282 IHALFGAFITGVLVPK-EGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVA 360 (801)
Q Consensus 282 ~~~~lgaf~aGl~l~~-~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l 360 (801)
.+|.+=++++|+++.. +-+....+.+-++.+. +.-.|+=.+..|+.++...... ............-.+...+..++
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~-~a~~pl~li~lG~~L~~~~~~~-~~~~~~~~~~~~kll~~Pl~~~~ 244 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLLA-SAASPLALIALGLSLAFLKLKG-SKPPIILIALSLKLLLAPLVALL 244 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-HhhhhHHHHHHhhhcchhhhcc-ccchhHHHHHHHHHHHHHHHHHH
Confidence 4666677777776653 2333445556666664 8899999999999999854443 22333333333356677778888
Q ss_pred HHHHcCCChHHHHHHHHH-HhhhhHHHHHHHHhhcccCcCChhHHHHHHHHHHHHHHhHHHHHHHH
Q 003702 361 MSLACRIPFKEALALGFL-MNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPLVMAV 425 (801)
Q Consensus 361 ~~~~~~~~~~~~~~lgl~-l~~kG~~~l~l~~~~~~~~~i~~~~~~~~v~~~lv~t~i~~pl~~~l 425 (801)
..+.++++..+...+=+. ..|-+....+++. +.+. +++..+..+....+.+.++-|...+.
T Consensus 245 ~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~---~~~~-~~~laa~~i~ist~ls~~t~p~~~~~ 306 (311)
T COG0679 245 VAKLLGLSGLALQVLVLLSAMPTAVNAYVLAR---QYGG-DPRLAASTILLSTLLSLLTLPLLILL 306 (311)
T ss_pred HHHHcCCChHHHHHHHHHhhCcHHhHHHHHHH---HhCC-ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888898876655222221 2444544444443 3343 33444444344445566666555443
No 172
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=42.53 E-value=2.2e+02 Score=31.76 Aligned_cols=94 Identities=23% Similarity=0.266 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hHHHHHH-HHHH--hhhhHHH
Q 003702 311 DLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIP-FKEALAL-GFLM--NTKGLVE 386 (801)
Q Consensus 311 ~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~~~~-~~~~~~l-gl~l--~~kG~~~ 386 (801)
+.++..++|+--...=++.|+..+.. ... ..+...+++.++-.+++.+..+.++.. -.|.+.. |... -.-|.+-
T Consensus 54 ~~v~~~~vPlai~LlLl~~Dlr~i~~-~g~-~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N 131 (378)
T PF05684_consen 54 DFVWTYLVPLAIPLLLLSADLRRILR-LGG-RLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGSVN 131 (378)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHH-hhH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCchhH
Confidence 33345555655555557889888764 232 344555666777777777777776654 2344333 2221 1234444
Q ss_pred HHHHHhhcccCcCChhHHHHHHH
Q 003702 387 LIVLNIGKDRKVLNDQTFAIMVL 409 (801)
Q Consensus 387 l~l~~~~~~~~~i~~~~~~~~v~ 409 (801)
++....++ +. +++.++..+.
T Consensus 132 ~~Av~~al--~~-~~~~~~a~~a 151 (378)
T PF05684_consen 132 FVAVAEAL--GV-SDSLFAAALA 151 (378)
T ss_pred HHHHHHHH--CC-CHHHHHHHHH
Confidence 44444333 32 4566655533
No 173
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=42.47 E-value=1.1e+02 Score=32.91 Aligned_cols=72 Identities=21% Similarity=0.223 Sum_probs=47.2
Q ss_pred HHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHH
Q 003702 60 AEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFALGI 139 (801)
Q Consensus 60 ~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~ 139 (801)
--++.|+++|.. .+++.+. +..-..+-..|+-|..|-.+|+..+.+.+-.-..+++..++++....+
T Consensus 176 lP~iiG~iLGNL----D~~~r~f---------l~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~ 242 (314)
T PF03812_consen 176 LPIIIGMILGNL----DPDFRKF---------LAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLY 242 (314)
T ss_pred HHHHHHHHHhcC----CHHHHHH---------HhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHH
Confidence 356789999852 1222222 222223445678899999999999999998888888877766655544
Q ss_pred HHHHH
Q 003702 140 GTSFA 144 (801)
Q Consensus 140 ~~~~~ 144 (801)
....+
T Consensus 243 ~~dr~ 247 (314)
T PF03812_consen 243 LADRL 247 (314)
T ss_pred HHHHH
Confidence 44433
No 174
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=41.74 E-value=3.6e+02 Score=26.74 Aligned_cols=128 Identities=14% Similarity=0.286 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHH--HhchhHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 003702 234 VIGCVFIVTPIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTD--SIGIHALFGAFITGVLVPKEGPFAGALVEKVED 311 (801)
Q Consensus 234 ~~~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae--~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~ 311 (801)
..+..++.+++.-.+..|.|+.. ..+...+...+......+ ..-...+++++++=++... +..++.-...+-.
T Consensus 37 ~~i~ali~g~vyml~~~KV~K~G----~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~-g~y~~~~~~~iay 111 (186)
T PF09605_consen 37 PAIAALICGIVYMLMVAKVPKRG----AFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKK-GGYKSKKRNTIAY 111 (186)
T ss_pred HHHHHHHHHHHHHHHHHHcCchH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-CCCCcHHHHHHHH
Confidence 34455667777777888876432 222222222222222222 2334566667777777753 3333322222211
Q ss_pred H-----HHHHHHHHHHHHhccc---------cc-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 003702 312 L-----VSGLLLPLYFVSSGLK---------TN-ITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACR 366 (801)
Q Consensus 312 ~-----~~~~~~plfF~~~G~~---------id-l~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~~ 366 (801)
. ..+-+.|++|..=... -+ ...+.+..+.+...+.++..+++-++|+++..+..|
T Consensus 112 ~vf~~~~~g~~~p~~~~~~~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk 181 (186)
T PF09605_consen 112 AVFSLGYMGPYLPIWFMRDAYLAAMIAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKKLLK 181 (186)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1156677776533332 11 111111112233455566777777888888877664
No 175
>PRK06801 hypothetical protein; Provisional
Probab=39.78 E-value=2.8e+02 Score=29.73 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=70.9
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEEecCCCCCC
Q 003702 535 SRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDRGLGGS 614 (801)
Q Consensus 535 ~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgilvdrg~~~~ 614 (801)
++..|-.|-... -.+...+++.|++.++..||.-........| -..+....+...++++.||++--|.|..-
T Consensus 16 ~~yaV~Afn~~n--~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~-----~~~~~~~~~~~a~~~~vpV~lHlDH~~~~- 87 (286)
T PRK06801 16 HGYALGAFNVLD--SHFLRALFAAAKQERSPFIINIAEVHFKYIS-----LESLVEAVKFEAARHDIPVVLNLDHGLHF- 87 (286)
T ss_pred CCceEEEEeeCC--HHHHHHHHHHHHHHCCCEEEEeCcchhhcCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCH-
Confidence 344444555544 3788999999999999999988764432222 23477888899999999999999987530
Q ss_pred Cccc-cCCcceEEEEeccCCcCh-HHHHHHHHHH---hhCCCeEE
Q 003702 615 THVA-ASNVSSVITVLFFGGNDD-QEALAYGARM---AEHPGISL 654 (801)
Q Consensus 615 ~~~~-~~~~~~~i~v~f~Gg~dd-reaL~~a~rm---a~~~~v~l 654 (801)
.... .-+.... -|-|+|+..+ +|-++..+++ |+.-++.+
T Consensus 88 e~i~~Ai~~Gft-SVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 88 EAVVRALRLGFS-SVMFDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred HHHHHHHHhCCc-EEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 0000 0000111 2345776544 8888776665 56666654
No 176
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=39.68 E-value=2e+02 Score=30.85 Aligned_cols=73 Identities=21% Similarity=0.198 Sum_probs=47.4
Q ss_pred HHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHH
Q 003702 60 AEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFALGI 139 (801)
Q Consensus 60 ~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~ 139 (801)
-.++.|+++|. .++-++.++ ..-..+-..|+-|..|-.+|++.+.+.+-.-+.+++..++++....+
T Consensus 176 lPlliG~ilGN-----LD~~~r~fl--------~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~ 242 (314)
T TIGR00793 176 LPFLVGFALGN-----LDPELRDFF--------SKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLI 242 (314)
T ss_pred HHHHHHHHHhc-----CCHHHHHHh--------ccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHH
Confidence 35678999985 222112222 11222335678899999999999999988888888877766655555
Q ss_pred HHHHHH
Q 003702 140 GTSFAL 145 (801)
Q Consensus 140 ~~~~~l 145 (801)
....++
T Consensus 243 ~~dr~~ 248 (314)
T TIGR00793 243 LADKFI 248 (314)
T ss_pred HHHHHh
Confidence 444433
No 177
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=38.86 E-value=4.4e+02 Score=26.83 Aligned_cols=47 Identities=11% Similarity=0.155 Sum_probs=25.3
Q ss_pred HHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHH
Q 003702 159 LIFMGVAFSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLA 208 (801)
Q Consensus 159 ~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~i~ll~ 208 (801)
.-++|-..|.|+ ++..+-++.| .+.+..+...+..++.....++=..
T Consensus 26 tg~~GGlvSSTA--~t~~la~~~r-~~p~~~~~~~~~i~lA~~~m~~R~l 72 (211)
T PF13194_consen 26 TGLLGGLVSSTA--TTVSLARRSR-ENPELSRLLAAGILLASAVMFVRVL 72 (211)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHh-hCcchhHHHHHHHHHHHHHHHHHHH
Confidence 445555556555 3444444444 3445666666666666665554333
No 178
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=38.70 E-value=5.6e+02 Score=28.01 Aligned_cols=253 Identities=15% Similarity=0.185 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHH------HHHHHHHh
Q 003702 35 QICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGL------LFFLFLVG 108 (801)
Q Consensus 35 ~i~lil~~~~~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl------~~llF~~G 108 (801)
++..+++...+++.-.||---|.+.--|=.|+++...-+... .+..........++.+-+.|+ .++.+-+|
T Consensus 4 ~~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~---~~~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIG 80 (360)
T PF03977_consen 4 NIVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGL---MDQPVGGGEIGGLQPIYYFGISNGLFPPLIFMGIG 80 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhh---cccccccCCCChHHHHHHHhhhcchhhHHHHHHHh
Confidence 445555555566666677678888888989999874321110 000000001122333333332 23555678
Q ss_pred hccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHhhccHHHHHHHHHhcCccCChh
Q 003702 109 LEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDV 188 (801)
Q Consensus 109 le~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~ 188 (801)
--+|+.-+..+.|..+.=+..++-+ +.++..+..++.. ..++..+|++-..=.|..+.- ..++.+.-+
T Consensus 81 AmtDFgpllanP~~~llGaaAQ~Gi--f~t~~~A~~lGf~-------~~eAAsIgIIGgADGPtsIf~---s~~LAp~Ll 148 (360)
T PF03977_consen 81 AMTDFGPLLANPKTLLLGAAAQFGI--FATFLGAILLGFT-------PKEAASIGIIGGADGPTSIFV---SSKLAPHLL 148 (360)
T ss_pred HHHhhHHHHhCHHHHHHHHHHHHhH--HHHHHHHHHhCCC-------HHHhhHhhhcccCCCcHHHHH---HHhhhHHHH
Confidence 8999999999998744333222211 1122222233221 134555555443322211111 122223223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhc--CCCCCc-chH
Q 003702 189 GRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVTPIFKWME----KRC--PDGEPV-KEL 261 (801)
Q Consensus 189 g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~----~~~--~~~~~~-~e~ 261 (801)
|.+++++ . .+...+-.+-+|+++-+. |+. ++.+++ +..
T Consensus 149 gpIaVaA---------------Y--------------------sYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~e 193 (360)
T PF03977_consen 149 GPIAVAA---------------Y--------------------SYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTE 193 (360)
T ss_pred HHHHHHH---------------H--------------------HHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHH
Confidence 3222111 0 011222333444444432 111 222333 223
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhH
Q 003702 262 YVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSW 340 (801)
Q Consensus 262 ~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~ 340 (801)
-+.+-+.....++++. =.-.+.+|.+++|-.+.+ ...-+++.+..+.-..++..-+.-..+|...+-+.+.+..+.
T Consensus 194 kiiFpivv~~~~~ll~--P~a~pLig~Lm~Gnl~rE-sgv~~rLs~taqn~l~nivTi~LGl~vGat~~a~~fL~~~tl 269 (360)
T PF03977_consen 194 KIIFPIVVTILVGLLL--PSAAPLIGMLMFGNLLRE-SGVVERLSKTAQNELMNIVTIFLGLTVGATMTAETFLNPQTL 269 (360)
T ss_pred HHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhcCHHHH
Confidence 3445555555555442 234689999999999985 333344444433332233333334567777776666554433
No 179
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=38.10 E-value=24 Score=37.87 Aligned_cols=114 Identities=19% Similarity=0.296 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC------ChHHHHHHHHHHhhhhH
Q 003702 311 DLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRI------PFKEALALGFLMNTKGL 384 (801)
Q Consensus 311 ~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~~~------~~~~~~~lgl~l~~kG~ 384 (801)
.+.++++=|+-|.-+|..+|+..+... .+ ..++-..+=++ +..+++.+...|+ +.+|+-.+|.+=+.-|-
T Consensus 59 gi~~~l~P~LIFlGIGAmtDFgpllan-P~--~~llGaaAQ~G-iF~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGP 134 (354)
T TIGR01109 59 GIGSGIAPLLIFMGIGALTDFGPLLAN-PR--TLLLGAAAQFG-IFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGP 134 (354)
T ss_pred HHhcchHHHHHHHhccHHhhhHHHHhC-hH--HHHHHHHHHhh-HHHHHHHHHHhCCCcccccChhhceeeeeeccCCCc
Confidence 334578888889999999999876532 22 22222222222 2335556666677 77999999887777777
Q ss_pred HHHHHHHhhc-c-cCcCChhHHHHHHHHHHHHHHhHHHHHHHHccccccc
Q 003702 385 VELIVLNIGK-D-RKVLNDQTFAIMVLMAVFTTFITTPLVMAVYKPNQKT 432 (801)
Q Consensus 385 ~~l~l~~~~~-~-~~~i~~~~~~~~v~~~lv~t~i~~pl~~~l~~~~~~~ 432 (801)
.++.+.+... + .+.+.-..|+-| -+.-.+-||+.|.+..+++|.
T Consensus 135 t~If~s~~lap~Llg~IaVAAYsYM----aLvPiiqPpimklLttkkeR~ 180 (354)
T TIGR01109 135 TAIYLSGKLAPELLAAIAVAAYSYM----ALVPIIQPPIMKALTSEKERK 180 (354)
T ss_pred hhhhhHhhhhhHHHHHHHHHHHHHH----HHHhcccchHHHhhcChHHhc
Confidence 7766654321 1 122222333333 233466788888876544443
No 180
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=37.27 E-value=2.4e+02 Score=31.84 Aligned_cols=98 Identities=21% Similarity=0.238 Sum_probs=64.4
Q ss_pred hHHHHHHHhhcCC--CceEEEecCCCCCCCccccCCcceEEEEeccCCcChHHHHHHHHHHh-hCCCeEEEEEEeccCCC
Q 003702 588 FRWVNKRVLEHAS--CSVGILVDRGLGGSTHVAASNVSSVITVLFFGGNDDQEALAYGARMA-EHPGISLNVVRFLPSSE 664 (801)
Q Consensus 588 ~~~v~~~vl~~ap--csVgilvdrg~~~~~~~~~~~~~~~i~v~f~Gg~ddreaL~~a~rma-~~~~v~ltvv~~v~~~~ 664 (801)
.-+++++|+-.+| |.- |+ .....-.+|||.|.||-|.--...++.+.+ .|+.+.|-=+.|--+..
T Consensus 225 ~ds~k~rvl~i~~rl~~~-i~-----------~~c~~~s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n~e~ 292 (520)
T KOG0573|consen 225 RDSLKDRVLVIPPRLCAN-IL-----------LRCIHESNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGNPEG 292 (520)
T ss_pred HHHHhhhhhccChhHhhh-cc-----------ccccccCcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccCCCc
Confidence 4567778877776 221 11 111223489999999999999888888887 67788877777753311
Q ss_pred CcccccccCCCCCCcccccHHHHHHHHHhhccCCCceEEEEE
Q 003702 665 ISGEIEADTNDAESTGESADEIFLAEVKQKFKNLEAFKYEER 706 (801)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~ 706 (801)
.. +.+.++++..-.-++|++..... ....+.|+
T Consensus 293 ~~--------~~~~PDRktgr~g~~eL~s~~P~-R~~nlV~v 325 (520)
T KOG0573|consen 293 SK--------EQNVPDRKTGRRGLEELQSLYPK-RSWNLVEV 325 (520)
T ss_pred cc--------ccCCccHHHHHHHHHHHHHhCCc-ceEEEEec
Confidence 11 12347788888889999887643 34555664
No 181
>PRK10711 hypothetical protein; Provisional
Probab=37.06 E-value=4.9e+02 Score=26.90 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=23.8
Q ss_pred cChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003702 111 MDPKSIRRAGKKALSIALGGISLPFALGIGTSFALR 146 (801)
Q Consensus 111 ~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~ 146 (801)
-+.+.+||+++....--..|.++.++.+..++.+++
T Consensus 79 ~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg 114 (231)
T PRK10711 79 EQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMG 114 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 356778888887776666666666666665555554
No 182
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=35.04 E-value=5.6e+02 Score=26.96 Aligned_cols=43 Identities=26% Similarity=0.532 Sum_probs=29.8
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhC
Q 003702 25 LDYALPLAILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLG 69 (801)
Q Consensus 25 l~~~l~~~l~~i~lil~~~~~~~~ll~~l~~P~ii~~ilaGiilG 69 (801)
+.+=+|+.+-...-++.+++++.++++. .|..+-....|+++|
T Consensus 54 ~~fL~~l~~G~~~gi~~~s~~i~~ll~~--yp~~t~~fF~GLIlg 96 (257)
T PF04018_consen 54 LKFLLPLGIGILIGILLFSKVISYLLEN--YPIPTYSFFFGLILG 96 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHH
Confidence 3444566666667777777777777775 456667777788877
No 183
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=34.79 E-value=2.7e+02 Score=32.87 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhcc
Q 003702 35 QICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEM 111 (801)
Q Consensus 35 ~i~lil~~~~~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~Gle~ 111 (801)
+..++++++++.+.+.+.++...+++-+.+|+++|.+.-....+-.+ .......+.++.+.-.++....|+++
T Consensus 239 e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~----~~~~~f~~~ls~l~e~~IFvlLGl~l 311 (559)
T TIGR00840 239 EPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQ----TTIKYFMKMLSSLSETLIFIFLGVSL 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666667777788888999999999998643222111000 01124567777777777888888876
No 184
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=32.14 E-value=4.9e+02 Score=25.44 Aligned_cols=89 Identities=17% Similarity=0.236 Sum_probs=50.8
Q ss_pred hchhHHHHHHHHHhhccCCC---CchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchh--hhHHHHHHHHHHHHHHH
Q 003702 280 IGIHALFGAFITGVLVPKEG---PFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGL--QSWGFLVLVIVTACFGK 354 (801)
Q Consensus 280 ~g~~~~lgaf~aGl~l~~~~---~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~--~~~~~~~~~i~~~~~~K 354 (801)
+.+...-|+++.|+++.+-. |.. +......+..++.+-+|...+|++.-...+... ..+...+.- ++.++.-
T Consensus 21 ~~LG~a~G~L~vgL~~G~~~~~~~~~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~-~~i~~~~ 97 (169)
T PF06826_consen 21 FSLGAAGGVLFVGLILGALGRTGPIF--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLG-VIITLVP 97 (169)
T ss_pred eeccccHHHHHHHHHHHHhhhccCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence 34445557777777776421 111 344555566678888999999999875433221 233333333 3333344
Q ss_pred HHHHHHHHH-HcCCChHH
Q 003702 355 IVGTVAMSL-ACRIPFKE 371 (801)
Q Consensus 355 ~i~~~l~~~-~~~~~~~~ 371 (801)
.+.++..++ ++|+++-.
T Consensus 98 ~~~~~~~~~~~~~l~~~~ 115 (169)
T PF06826_consen 98 LLIALVIGRYLFKLNPGI 115 (169)
T ss_pred HHHHHHHHHHHcCCCHHH
Confidence 455555555 88887554
No 185
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=31.11 E-value=85 Score=29.84 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=25.9
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEec
Q 003702 625 VITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFL 660 (801)
Q Consensus 625 ~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v 660 (801)
++++.|.||+|.--.|.++.+...+. -++.++.+-
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~d 35 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLD 35 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeC
Confidence 57899999999999998888766542 345566543
No 186
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=31.06 E-value=2.7e+02 Score=31.83 Aligned_cols=58 Identities=22% Similarity=0.257 Sum_probs=42.0
Q ss_pred eEEEEeccCCcChHHHHHHHHHHh-hCCCeEEEEEEeccCCCCcccccccCCCCCCcccccHHHHHHHHHhhc
Q 003702 624 SVITVLFFGGNDDQEALAYGARMA-EHPGISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVKQKF 695 (801)
Q Consensus 624 ~~i~v~f~Gg~ddreaL~~a~rma-~~~~v~ltvv~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 695 (801)
.+|+|.+.||+|.--.|.+..++. ..++.+++++++-..... +.+.++++.+++.+++
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~--------------~s~~~~~~~~~~~~~l 74 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSP--------------NADSWVKHCEQVCQQW 74 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCc--------------chHHHHHHHHHHHHHc
Confidence 589999999999998888887776 456889999998532211 1233456777777765
No 187
>PRK01658 holin-like protein; Validated
Probab=30.82 E-value=4.3e+02 Score=24.36 Aligned_cols=30 Identities=23% Similarity=0.534 Sum_probs=13.9
Q ss_pred HHHHHHHHh--cccccccccchhhhHHHHHHHH
Q 003702 317 LLPLYFVSS--GLKTNITTIQGLQSWGFLVLVI 347 (801)
Q Consensus 317 ~~plfF~~~--G~~idl~~l~~~~~~~~~~~~i 347 (801)
-+|+||+=. |.--..+.+.. +.|...+.++
T Consensus 65 ~m~llFVPa~VGi~~~~~ll~~-~~~~il~~iv 96 (122)
T PRK01658 65 ELPLFFIPSAVGVMNYGDFLSS-KGISLFLVVV 96 (122)
T ss_pred HHHHHHHHhhhHHHHhHHHHHH-HHHHHHHHHH
Confidence 356777744 44333444443 3444333333
No 188
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=29.52 E-value=3.2e+02 Score=28.10 Aligned_cols=34 Identities=12% Similarity=-0.020 Sum_probs=26.2
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEec
Q 003702 624 SVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFL 660 (801)
Q Consensus 624 ~~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v 660 (801)
.++++.|.||+|+--.|.++.+.. ++. +.|+.+-
T Consensus 26 ~~~~~s~S~Gkds~VlL~l~~~~~-~~~--i~vv~vD 59 (226)
T TIGR02057 26 HGLVQTSAFGIQALVTLHLLSSIS-EPM--IPVIFID 59 (226)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhh-CCC--CCEEEEe
Confidence 378999999999999999999976 233 4555544
No 189
>PRK01821 hypothetical protein; Provisional
Probab=29.50 E-value=4.8e+02 Score=24.48 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=13.6
Q ss_pred HHHHHHH--hcccccccccchhhhHHHHHHHH
Q 003702 318 LPLYFVS--SGLKTNITTIQGLQSWGFLVLVI 347 (801)
Q Consensus 318 ~plfF~~--~G~~idl~~l~~~~~~~~~~~~i 347 (801)
+|+||+= +|.-...+.+.+ +.|..+++++
T Consensus 71 m~LfFVPa~VGim~~~~ll~~-~~~~il~~iv 101 (133)
T PRK01821 71 MALLFVPIGVGVMQYYDLLRA-QFGPIVVSCI 101 (133)
T ss_pred HHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 5677774 444333444443 3344333333
No 190
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=28.95 E-value=1.8e+02 Score=31.04 Aligned_cols=70 Identities=7% Similarity=0.060 Sum_probs=51.1
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEEecCCC
Q 003702 535 SRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDRGL 611 (801)
Q Consensus 535 ~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgilvdrg~ 611 (801)
++..|-.+-... -.+...+++.|++.++..||.-....-..-| ...+....+...+++++||++--|.|.
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g-----~~~~~~~~~~~a~~~~VPValHLDH~~ 85 (284)
T PRK12737 16 EGYAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGTFSYAG-----TDYIVAIAEVAARKYNIPLALHLDHHE 85 (284)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 344444555544 3788999999999999999987654322222 124677788999999999999999875
No 191
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=28.66 E-value=1.9e+02 Score=31.02 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=50.5
Q ss_pred ceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEEecCCC
Q 003702 536 RVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDRGL 611 (801)
Q Consensus 536 ~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgilvdrg~ 611 (801)
+..|-.+.... ..+...+++.|++.++..||.-....-...| -..+..+.....+++++||++=-|.|.
T Consensus 17 ~yaV~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~g-----~~~~~~~~~~~A~~~~VPValHLDH~~ 85 (284)
T PRK12857 17 GYAVGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQGAIKYAG-----IEYISAMVRTAAEKASVPVALHLDHGT 85 (284)
T ss_pred CCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 34444555444 3788999999999999999988764332222 124667778888999999999999975
No 192
>PRK01658 holin-like protein; Validated
Probab=28.33 E-value=4.8e+02 Score=24.07 Aligned_cols=98 Identities=18% Similarity=0.182 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCh---hHHHHHHHHhhCccccCCcccccccccCCCcHHHHH-----HHHHHHHH
Q 003702 30 PLAILQICLVVLLTRLLAFVLRPLRQPR---VIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLD-----TLANLGLL 101 (801)
Q Consensus 30 ~~~l~~i~lil~~~~~~~~ll~~l~~P~---ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~-----~l~~~gl~ 101 (801)
..++.|+.+++.+..+...+.+.+++|- ++|.++-=+.+ ..+... .+.++ .++++++.
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L---~~~~ik-----------~~~v~~~a~~Ll~~m~ll 69 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLL---SFKILK-----------LKWIELGAETLLAELPLF 69 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---HhCCcC-----------HHHHHHHHHHHHHHHHHH
Confidence 4578898888888888888888666553 34443321111 112221 11222 23444444
Q ss_pred HHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 003702 102 FFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFALGIGT 141 (801)
Q Consensus 102 ~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~ 141 (801)
|.==.+|+=...+.+++++.+.....+.+.++.++.+..+
T Consensus 70 FVPa~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~ 109 (122)
T PRK01658 70 FIPSAVGVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYL 109 (122)
T ss_pred HHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444567767777777777777766666666665554433
No 193
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=28.31 E-value=3.5e+02 Score=28.31 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=29.2
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhhCC--CeEEEEEEec
Q 003702 624 SVITVLFFGGNDDQEALAYGARMAEHP--GISLNVVRFL 660 (801)
Q Consensus 624 ~~i~v~f~Gg~ddreaL~~a~rma~~~--~v~ltvv~~v 660 (801)
.+|+|.+.||+|.--.|.++.++.+.. +.++..+++-
T Consensus 30 ~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd 68 (258)
T PRK10696 30 DRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLD 68 (258)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEec
Confidence 489999999999988888888877543 4577777764
No 194
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=27.94 E-value=4e+02 Score=29.62 Aligned_cols=127 Identities=19% Similarity=0.166 Sum_probs=65.8
Q ss_pred CCcccccchhhHHHHHHHhhcCCC--ceEEEecCCCCCCCccccCCcceEEEEeccCCcChHHHHHHHHHHhhCCCeEEE
Q 003702 578 DGVLETTRSEFRWVNKRVLEHASC--SVGILVDRGLGGSTHVAASNVSSVITVLFFGGNDDQEALAYGARMAEHPGISLN 655 (801)
Q Consensus 578 ~g~~~~~~~~~~~v~~~vl~~apc--sVgilvdrg~~~~~~~~~~~~~~~i~v~f~Gg~ddreaL~~a~rma~~~~v~lt 655 (801)
.|++|..-.....|.+.|-+.-+. +|++ | .. .. . . ...+|.+-+|++++++.|.+... +-
T Consensus 192 GGSlENR~Rf~~EVv~aVr~~vg~~~~vg~---R-ls-~~---------d-~-~~~~g~~~~e~~~la~~L~~~G~--~d 253 (363)
T COG1902 192 GGSLENRARFLLEVVDAVREAVGADFPVGV---R-LS-PD---------D-F-FDGGGLTIEEAVELAKALEEAGL--VD 253 (363)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCceEEE---E-EC-cc---------c-c-CCCCCCCHHHHHHHHHHHHhcCC--cc
Confidence 366665556678888888887775 4555 3 10 00 0 0 12338899999999999998865 33
Q ss_pred EEEeccCCCCcccccccCCCCCCcccccHHHHHHHHHhhccCCCceEEEEEE-ecChhHHHHHHhcccCCcEEEEccCC
Q 003702 656 VVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVKQKFKNLEAFKYEERW-IKNTSETVDVLGEFNKCHLFLVGRMP 733 (801)
Q Consensus 656 vv~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~-v~~~~e~~~~l~~~~~~DLvivGr~~ 733 (801)
.+++........ ....... ..+..++..+.....++...-.- ..+..+...++++= ..|||.+||-.
T Consensus 254 ~i~vs~~~~~~~--------~~~~~~~--~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g-~aDlVa~gR~~ 321 (363)
T COG1902 254 YIHVSEGGYERG--------GTITVSG--PGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASG-RADLVAMGRPF 321 (363)
T ss_pred EEEeecccccCC--------CCccccc--cchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC-CCCEEEechhh
Confidence 344443222100 0000000 33333333222111112222211 23555555555542 48999999997
No 195
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=27.90 E-value=1.1e+02 Score=28.46 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=26.4
Q ss_pred EEeEEecCCCChHHHHHHHHHhcCccEEEecCccc
Q 003702 540 RPMTAISAMHGMHEDICSSAERKRAAMIILPFHKH 574 (801)
Q Consensus 540 ~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~ 574 (801)
.-..++-|...||..|.++|++.+||+||-|....
T Consensus 72 ~lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e 106 (127)
T PF03686_consen 72 DLIYSIRPPPELQPPILELAKKVGADLIIRPLGGE 106 (127)
T ss_dssp EEEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB
T ss_pred cEEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCC
Confidence 34556678889999999999999999999999754
No 196
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=27.65 E-value=1.6e+02 Score=27.82 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEEecCCC
Q 003702 551 MHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDRGL 611 (801)
Q Consensus 551 m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgilvdrg~ 611 (801)
..+.|.++.++.+++.||+|...+ .+|.........+.+.+++-++-++|| .++|.-+
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~--~~G~~~~~~~~v~~f~~~L~~~~~~~v-~~~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLN--MDGTEGPRTERARKFANRLEGRFGLPV-VLVDERL 99 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCC--CCCCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 468899999999999999998765 356543334457788888877778998 4567643
No 197
>COG3371 Predicted membrane protein [Function unknown]
Probab=27.23 E-value=6e+02 Score=25.14 Aligned_cols=89 Identities=16% Similarity=0.235 Sum_probs=52.6
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHc-ccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHH
Q 003702 22 DNPLDYALPLAILQICLVVLLTRLLAFVLR-PLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGL 100 (801)
Q Consensus 22 ~~~l~~~l~~~l~~i~lil~~~~~~~~ll~-~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl 100 (801)
.+++-|+..+++..++.++.... +.| |.+-+.-.-++++|+.+.- .| +||++. ..+.+.....
T Consensus 46 p~~~ifN~glIl~Gll~i~~s~~----l~r~k~~~~g~~ll~is~lfLaL--VG--------VFpEgt--~pH~~vs~~f 109 (181)
T COG3371 46 PYGWIFNTGLILLGLLVILFSIL----LIRNKIENYGGALLIISGLFLAL--VG--------VFPEGT--PPHVFVSILF 109 (181)
T ss_pred CcceEEechHHHHHHHHHHHHHH----HHHHHhhhcchHHHHHHHHHHHh--ee--------eCCCCC--CchHHHHHHH
Confidence 34455566565555444433322 222 4555555556777777662 12 345433 4567778888
Q ss_pred HHHHHHHhhccChhHHHhhhhhHHHH
Q 003702 101 LFFLFLVGLEMDPKSIRRAGKKALSI 126 (801)
Q Consensus 101 ~~llF~~Gle~d~~~l~~~~~~~~~i 126 (801)
.+++|.+.+-+.....+++.+.....
T Consensus 110 fll~fi~~~i~si~~~~~~~~~~~~~ 135 (181)
T COG3371 110 FLLSFIAMLIYSIGRLLRNRSGFGLI 135 (181)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 88999999888888877755544433
No 198
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=27.21 E-value=7.8e+02 Score=26.17 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=25.1
Q ss_pred HHhhccHHHHHHHHHh--cCccCChhHHHHHHHHHHHHHHHHHHHH
Q 003702 165 AFSITAFPVLARILAE--LKLLTTDVGRMAMSAAAVNDVAAWILLA 208 (801)
Q Consensus 165 ~ls~Ts~~vv~~iL~e--l~ll~s~~g~l~ls~a~i~D~~~i~ll~ 208 (801)
.++.....++.-+.+. .+....+.|..++-+=++|-....+-.-
T Consensus 151 ~~a~~~t~~~~~~~~~~~~~~~~~~~~~~vv~aH~lDa~sT~vGid 196 (273)
T PF01889_consen 151 GLATIATALVWLLLRRFKVNILTDPLGLLVVFAHLLDASSTFVGID 196 (273)
T ss_pred HHHHHHHHHHHHHHhccchhhhccchhHHHHHHHHHhHHHHhhhee
Confidence 3333333344444433 3556677888888888877766554443
No 199
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=26.56 E-value=7.5e+02 Score=26.75 Aligned_cols=62 Identities=24% Similarity=0.387 Sum_probs=35.0
Q ss_pred HHHHHHcccCCChhHHHHHHHHhhCccccCCcccccccccCCCcHHHHHHHHHHHHHHHHHHH
Q 003702 45 LLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLV 107 (801)
Q Consensus 45 ~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~~gl~~llF~~ 107 (801)
.-..+.-.+|+|+++.-+++|..+|-++.-.. ..++.-+.+.+.--++.-+.+|.++.++..
T Consensus 33 ~~~~ii~~~RlPR~l~a~l~G~~La~sG~~lQ-~~~rNpLA~P~iLGissgA~lg~~~~~~~~ 94 (311)
T PF01032_consen 33 IAQFIIWDLRLPRILAAILVGAALALSGALLQ-TLTRNPLADPSILGISSGASLGAVLAILLF 94 (311)
T ss_dssp HHHHHHCCTCHHHHHHHHHHHHHHHHHHHHHH-HHTT-TT--TTTTTHHHHHHHHHHHHHHCC
T ss_pred hhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCCCccccccchHhHHHHHHHHHHHHHh
Confidence 34456778899999999999999984431100 011111111222234556667766666554
No 200
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=26.55 E-value=9.7e+02 Score=27.08 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=30.3
Q ss_pred ccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Q 003702 327 LKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALAL 375 (801)
Q Consensus 327 ~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~l 375 (801)
+.+|-..+.. .....+..++...++-++.+.+....+|++++|++..
T Consensus 109 Lgm~RklLik--a~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~i~~ 155 (414)
T PF03390_consen 109 LGMNRKLLIK--AFARFIPPILGGVIGAFLLGGLVGMLFGYSFKDAIFY 155 (414)
T ss_pred hhcCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3444444432 2333444555666677777888889999999998755
No 201
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=26.23 E-value=2.2e+02 Score=30.42 Aligned_cols=69 Identities=7% Similarity=0.039 Sum_probs=51.0
Q ss_pred ceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEEecCCC
Q 003702 536 RVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDRGL 611 (801)
Q Consensus 536 ~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgilvdrg~ 611 (801)
+..|-.+-... ..+...+++.|++.++..||.-..+.-...| ...+..+.+...+++.+||++=-|.|.
T Consensus 15 ~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~~-----~~~~~~~~~~~a~~~~VPValHLDHg~ 83 (282)
T TIGR01858 15 GYAVPAFNIHN--LETIQAVVETAAEMRSPVILAGTPGTFKHAG-----TEYIVALCSAASTTYNMPLALHLDHHE 83 (282)
T ss_pred CCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 33444444443 3788999999999999999987764432212 234677888999999999999999875
No 202
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=25.87 E-value=1.2e+02 Score=29.05 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=21.2
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCC
Q 003702 625 VITVLFFGGNDDQEALAYGARMAEHP 650 (801)
Q Consensus 625 ~i~v~f~Gg~ddreaL~~a~rma~~~ 650 (801)
++++.|.||+|+.-.|.++.+...+-
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~ 26 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV 26 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999988773
No 203
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=25.86 E-value=9.6e+02 Score=26.79 Aligned_cols=24 Identities=21% Similarity=0.599 Sum_probs=15.7
Q ss_pred HHHHHHcccCCChhHHHHHHHHhh
Q 003702 45 LLAFVLRPLRQPRVIAEIVGGILL 68 (801)
Q Consensus 45 ~~~~ll~~l~~P~ii~~ilaGiil 68 (801)
+..++.++.++|.-+.-+++.+++
T Consensus 10 i~l~~~~~~~i~~~~~al~~~~ll 33 (416)
T cd01118 10 LVLVIWRPFGLPEAVWAVLGAVIA 33 (416)
T ss_pred HHHHHHccCCCChHHHHHHHHHHH
Confidence 344666777788777766666554
No 204
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=25.32 E-value=4.2e+02 Score=29.78 Aligned_cols=107 Identities=9% Similarity=0.071 Sum_probs=69.2
Q ss_pred EeEEecCCC-ChHHHHHHHHHhcCccEEEecCccccccCCc-ccccchhhHHHHHHHhhcCCCce-EEEecCCCCCCCcc
Q 003702 541 PMTAISAMH-GMHEDICSSAERKRAAMIILPFHKHQRFDGV-LETTRSEFRWVNKRVLEHASCSV-GILVDRGLGGSTHV 617 (801)
Q Consensus 541 ~~~~vs~~~-~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~-~~~~~~~~~~v~~~vl~~apcsV-gilvdrg~~~~~~~ 617 (801)
..++|.|.+ ..-+.-++.|++.+..++|-....+-..+|. .+-....|+....++.++.-+|. -|+.-+.+.|...|
T Consensus 15 Gi~SVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVdq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~W 94 (421)
T PRK15052 15 GICSVCSAHPLVIEAALAFDLNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVYGIADKVGFPRERIILGGDHLGPNCW 94 (421)
T ss_pred ceeeECCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCccc
Confidence 445666433 4455556778889999999999887665554 22244568889999999988886 33333333343222
Q ss_pred ccCCcceEEEEeccCCcChHHHHHHHHHHhhC-CCeEEEEEEecc
Q 003702 618 AASNVSSVITVLFFGGNDDQEALAYGARMAEH-PGISLNVVRFLP 661 (801)
Q Consensus 618 ~~~~~~~~i~v~f~Gg~ddreaL~~a~rma~~-~~v~ltvv~~v~ 661 (801)
+. ...+||.+.|.+|.+. -.+--+.+|+-+
T Consensus 95 q~--------------~pa~eAM~~A~~li~ayV~AGF~kIHLD~ 125 (421)
T PRK15052 95 QQ--------------EPADAAMEKSVELVKAYVRAGFSKIHLDA 125 (421)
T ss_pred cC--------------CCHHHHHHHHHHHHHHHHHcCCceEEecC
Confidence 22 1789999999999754 244555566543
No 205
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=25.23 E-value=6.4e+02 Score=24.48 Aligned_cols=15 Identities=33% Similarity=0.817 Sum_probs=12.6
Q ss_pred hhHHHHHHHHhhCcc
Q 003702 57 RVIAEIVGGILLGPS 71 (801)
Q Consensus 57 ~ii~~ilaGiilGP~ 71 (801)
.-+..+++|+++||.
T Consensus 34 ~~i~~vlaavllGP~ 48 (160)
T TIGR02359 34 QHFVNVIAGVLLGPW 48 (160)
T ss_pred hHHHHHHHHHHHchH
Confidence 457889999999994
No 206
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=24.99 E-value=8.5e+02 Score=25.84 Aligned_cols=173 Identities=11% Similarity=0.034 Sum_probs=85.4
Q ss_pred HHHHHHHHhcCccEEEecCccccccC-C-cccccchhhHHHHHHHhhcCCCceEEEecCCCCCCCccccCCcceEEEEec
Q 003702 553 EDICSSAERKRAAMIILPFHKHQRFD-G-VLETTRSEFRWVNKRVLEHASCSVGILVDRGLGGSTHVAASNVSSVITVLF 630 (801)
Q Consensus 553 ~~I~~~A~~~~a~lIil~~h~~~~~~-g-~~~~~~~~~~~v~~~vl~~apcsVgilvdrg~~~~~~~~~~~~~~~i~v~f 630 (801)
.+..+.+++.++|.|=+-++-..... | ....+......+.+.|-+...+||.+ | +
T Consensus 105 ~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~v---K----------------l---- 161 (296)
T cd04740 105 VEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIV---K----------------L---- 161 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEE---E----------------e----
Confidence 34445556678999988765332211 1 12222234556666766655677654 1 1
Q ss_pred cCCcChHHHHHHHHHHhhCCCeEEEEEEeccCCCCcc---cccccC---CCCCCcccccHHHHHHHHHhhccCCCceEEE
Q 003702 631 FGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISG---EIEADT---NDAESTGESADEIFLAEVKQKFKNLEAFKYE 704 (801)
Q Consensus 631 ~Gg~ddreaL~~a~rma~~~~v~ltvv~~v~~~~~~~---~~~~~~---~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~ 704 (801)
+++..+..++|+++.+..---+++........-+. ...... -......+...-+++.++++.. +-.+...
T Consensus 162 --~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~--~ipii~~ 237 (296)
T cd04740 162 --TPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV--EIPIIGV 237 (296)
T ss_pred --CCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc--CCCEEEE
Confidence 13344677778776654322244442221100000 000000 0001112233456777777654 1222211
Q ss_pred EEEecChhHHHHHHhcccCCcEEEEccCC------CchhhcccccCCCCCccccccc
Q 003702 705 ERWIKNTSETVDVLGEFNKCHLFLVGRMP------VSRAAAMLKVKSDCPELGPVGS 755 (801)
Q Consensus 705 e~~v~~~~e~~~~l~~~~~~DLvivGr~~------~~~~~~gl~~w~e~~eLG~igd 755 (801)
= -+.++.+..+.++ .+.|++.+||.- -..+..|+.+|.+..-...+.|
T Consensus 238 G-GI~~~~da~~~l~--~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g~~~~~~ 291 (296)
T cd04740 238 G-GIASGEDALEFLM--AGASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGIKSIEE 291 (296)
T ss_pred C-CCCCHHHHHHHHH--cCCCEEEEchhhhcChHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 1 1456677777775 238999999996 2445678888876444444443
No 207
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=24.97 E-value=2.5e+02 Score=31.01 Aligned_cols=88 Identities=16% Similarity=0.114 Sum_probs=57.3
Q ss_pred chHHHHHHHHhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCcccccc-CCc-cc---------ccchhhHH
Q 003702 522 DQVVVAFEAFRQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRF-DGV-LE---------TTRSEFRW 590 (801)
Q Consensus 522 ~~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~-~g~-~~---------~~~~~~~~ 590 (801)
+++.+.++. +++++.-|-.+-... -.+...+++.|++.++.+||.-....-.. .|. .+ .+...+..
T Consensus 13 ~~~~~lL~~-A~~~~yAVgAfNv~n--~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 89 (357)
T TIGR01520 13 DDVHKLFQY-AKENNFAIPAINCTS--SSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAH 89 (357)
T ss_pred HHHHHHHHH-HHHCCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHH
Confidence 444444443 333344444444443 47889999999999999999887644322 110 11 11123677
Q ss_pred HHHHHhhcCCCceEEEecCCCC
Q 003702 591 VNKRVLEHASCSVGILVDRGLG 612 (801)
Q Consensus 591 v~~~vl~~apcsVgilvdrg~~ 612 (801)
..+...+++++||++=-|.|..
T Consensus 90 ~v~~~Ae~a~VPValHLDHg~~ 111 (357)
T TIGR01520 90 HVHSIAEHYGVPVVLHTDHCAK 111 (357)
T ss_pred HHHHHHHHCCCCEEEECCCCCC
Confidence 8889999999999999999853
No 208
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=24.97 E-value=3.4e+02 Score=30.14 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhccChhHHHhhhhhHHHHHHH
Q 003702 98 LGLLFFLFLVGLEMDPKSIRRAGKKALSIALG 129 (801)
Q Consensus 98 ~gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 129 (801)
-|+.+.++..|.+.|++.+++..++...+++.
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG 148 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALG 148 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeeh
Confidence 67788999999999999999999988877544
No 209
>PRK01821 hypothetical protein; Provisional
Probab=24.74 E-value=5.9e+02 Score=23.91 Aligned_cols=94 Identities=12% Similarity=-0.009 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCh---hHHHHH--HHHhhCccccCCcccccccccCCCcHHHHH-----HHHHHH
Q 003702 30 PLAILQICLVVLLTRLLAFVLRPLRQPR---VIAEIV--GGILLGPSALGRNKDFLKAVFPSRSLTVLD-----TLANLG 99 (801)
Q Consensus 30 ~~~l~~i~lil~~~~~~~~ll~~l~~P~---ii~~il--aGiilGP~~lg~~~~~~~~lfp~~~~~~l~-----~l~~~g 99 (801)
..++.|+.+++.+..+...+.+-+++|- ++|.++ ..+..| ... .+.++ .++++.
T Consensus 9 ~~~l~~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L~~~-----~vk-----------~~~v~~~a~~LL~~m~ 72 (133)
T PRK01821 9 WQYLRAFVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLLALQ-----ILP-----------AKWVKPGCSLLIRYMA 72 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhC-----CcC-----------HHHHHHHHHHHHHHHH
Confidence 3567888888888888888888777543 334332 222222 221 11122 234444
Q ss_pred HHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHH
Q 003702 100 LLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFALGI 139 (801)
Q Consensus 100 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~ 139 (801)
+.|+==.+|+=...+.+++++.+....-+.+.++.++.+.
T Consensus 73 LfFVPa~VGim~~~~ll~~~~~~il~~ivvST~lvl~vtg 112 (133)
T PRK01821 73 LLFVPIGVGVMQYYDLLRAQFGPIVVSCIVSTLVVLLVVG 112 (133)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445566666777777777766666666655554443
No 210
>PRK04148 hypothetical protein; Provisional
Probab=24.43 E-value=1.1e+02 Score=28.74 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=29.0
Q ss_pred EeEEecCCCChHHHHHHHHHhcCccEEEecCccc
Q 003702 541 PMTAISAMHGMHEDICSSAERKRAAMIILPFHKH 574 (801)
Q Consensus 541 ~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~ 574 (801)
-..++-|...|+..|.++|++.+||++|-|....
T Consensus 80 liysirpp~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 80 LIYSIRPPRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred EEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 3445667789999999999999999999999754
No 211
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=24.24 E-value=1.1e+03 Score=27.51 Aligned_cols=23 Identities=22% Similarity=0.020 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 003702 125 SIALGGISLPFALGIGTSFALRA 147 (801)
Q Consensus 125 ~ia~~~~~ip~~~~~~~~~~l~~ 147 (801)
.++.+...+.+++.+++..+++.
T Consensus 359 lia~iaL~~~v~~~l~~~~l~g~ 381 (498)
T PRK05812 359 LIANIALVANLVLILAVLSLLGA 381 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Confidence 34455555555666655555543
No 212
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.16 E-value=9e+02 Score=25.86 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHH
Q 003702 315 GLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGK 354 (801)
Q Consensus 315 ~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K 354 (801)
-+-+|..|.++--.-++.. .+..+|..+.++.+.+...|
T Consensus 230 ylTlPvLf~MiSnHyp~~y-~~~~nWlil~li~~~g~~IR 268 (300)
T PF06181_consen 230 YLTLPVLFLMISNHYPMTY-GHPYNWLILALIMLAGALIR 268 (300)
T ss_pred eeHHHHHHHHHhccCcccc-ccchhHHHHHHHHHHHHHHH
Confidence 4668998888654444332 22356755555555544444
No 213
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=23.72 E-value=1.8e+02 Score=30.93 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=42.2
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEeccCCCCcccccccCCCCCCcccccHHHHHHHHHhhc
Q 003702 624 SVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVKQKF 695 (801)
Q Consensus 624 ~~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 695 (801)
.+|+|.+.||+|.--+|.+..++.++ +++.++++-..-.. ..+.+.+..+++....
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~--------------~~~~~~~~~~~~~~~~ 77 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRG--------------YSDQEAELVEKLCEKL 77 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCC--------------ccchHHHHHHHHHHHh
Confidence 59999999999999999999999888 88988888643221 1233456677776665
No 214
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=23.28 E-value=6.3e+02 Score=28.70 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccc
Q 003702 306 VEKVEDLVSGLLLPLYFVSSGLKTNI 331 (801)
Q Consensus 306 ~~kl~~~~~~~~~plfF~~~G~~idl 331 (801)
...++..+++.+|.+||..+|+.+.-
T Consensus 59 ~~~l~~wiNDgLMaiFFf~vGLEiKr 84 (423)
T PRK14853 59 SLSLGTWAADGLLAIFFFVVGLELKR 84 (423)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHhH
Confidence 34566777899999999999999953
No 215
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=23.20 E-value=1.1e+03 Score=26.69 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=23.6
Q ss_pred ChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003702 112 DPKSIRRAGKKALSIALGGISLPFALGIGTSFALRA 147 (801)
Q Consensus 112 d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~ 147 (801)
|.+.+.|.+.+.+..-+....+..++|..+...+.+
T Consensus 66 ~~~~lg~i~~~~~~~f~~tt~iA~~lgl~~~~l~~p 101 (428)
T PRK01663 66 DMKKVGRVGGKALLYFEIVSTIALIIGLIVVNVVQP 101 (428)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 667777777777666555666666666666665554
No 216
>PRK08185 hypothetical protein; Provisional
Probab=22.66 E-value=3e+02 Score=29.40 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=69.6
Q ss_pred ceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEEecCCCCCCC
Q 003702 536 RVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDRGLGGST 615 (801)
Q Consensus 536 ~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgilvdrg~~~~~ 615 (801)
+..|-.+-... -.+...+++.|++.++.+||.-..+.-...| ..+....+...++++.||++--|.|.. ..
T Consensus 12 ~yaV~AfN~~n--~e~~~avi~AAee~~sPvIl~~~~~~~~~~~------~~~~~~~~~~a~~~~vPV~lHLDHg~~-~e 82 (283)
T PRK08185 12 QFAVGAFNVAD--SCFLRAVVEEAEANNAPAIIAIHPNELDFLG------DNFFAYVRERAKRSPVPFVIHLDHGAT-IE 82 (283)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCcchhhhcc------HHHHHHHHHHHHHCCCCEEEECCCCCC-HH
Confidence 34444444443 4788999999999999999988765432222 237778889999999999999999853 00
Q ss_pred ccc-cCCcceEEEEeccCCc-ChHHHHHHHHHHh---hCCCeEEE
Q 003702 616 HVA-ASNVSSVITVLFFGGN-DDQEALAYGARMA---EHPGISLN 655 (801)
Q Consensus 616 ~~~-~~~~~~~i~v~f~Gg~-ddreaL~~a~rma---~~~~v~lt 655 (801)
... .-+.... -|.++|+. +.+|=++.++++. ..-++.+.
T Consensus 83 ~i~~ai~~Gf~-SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE 126 (283)
T PRK08185 83 DVMRAIRCGFT-SVMIDGSLLPYEENVALTKEVVELAHKVGVSVE 126 (283)
T ss_pred HHHHHHHcCCC-EEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 000 0000011 25678864 5566667766665 54455553
No 217
>PRK09535 btuC corrinoid ABC transporter permease; Reviewed
Probab=22.36 E-value=1.1e+03 Score=26.22 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=19.2
Q ss_pred HHcccCCChhHHHHHHHHhhCccc
Q 003702 49 VLRPLRQPRVIAEIVGGILLGPSA 72 (801)
Q Consensus 49 ll~~l~~P~ii~~ilaGiilGP~~ 72 (801)
+.-.+|+|+++.-+++|..++-++
T Consensus 90 iv~~iRlPRil~a~lvGa~LalsG 113 (366)
T PRK09535 90 IVLQIRLPRILLAATVGFALAAAG 113 (366)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444679999999999999998443
No 218
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=21.87 E-value=2.9e+02 Score=29.57 Aligned_cols=69 Identities=7% Similarity=0.043 Sum_probs=50.3
Q ss_pred ceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEEecCCC
Q 003702 536 RVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDRGL 611 (801)
Q Consensus 536 ~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgilvdrg~ 611 (801)
+..|-.+-... -.+...+++.|++.++..||.-....-..-| -..+........+++++||++=-|.|.
T Consensus 17 ~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g-----~~~~~~~~~~~A~~~~VPV~lHLDHg~ 85 (284)
T PRK09195 17 GYAVPAFNIHN--LETMQVVVETAAELHSPVIIAGTPGTFSYAG-----TEYLLAIVSAAAKQYHHPLALHLDHHE 85 (284)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcChhHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 34444444443 3788999999999999999987654322212 124677888999999999999999975
No 219
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=21.67 E-value=1.1e+03 Score=25.87 Aligned_cols=131 Identities=19% Similarity=0.136 Sum_probs=63.4
Q ss_pred CcccccchhhHHHHHHHhhcCCCceEEEecCCCCCCCccccCCcceEEEEeccCCcChHHHHHHHHHHhhCCCeE-EEEE
Q 003702 579 GVLETTRSEFRWVNKRVLEHASCSVGILVDRGLGGSTHVAASNVSSVITVLFFGGNDDQEALAYGARMAEHPGIS-LNVV 657 (801)
Q Consensus 579 g~~~~~~~~~~~v~~~vl~~apcsVgilvdrg~~~~~~~~~~~~~~~i~v~f~Gg~ddreaL~~a~rma~~~~v~-ltvv 657 (801)
|.++..-....++.+.|-+..+.++-|-+ | .+ ..+ ...||.+-+|++++++++.+...+. ++|-
T Consensus 185 GslenR~r~~~eiv~~ir~~vg~~~~v~i-R-l~------~~~-------~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs 249 (343)
T cd04734 185 GSLENRMRFLLEVLAAVRAAVGPDFIVGI-R-IS------GDE-------DTEGGLSPDEALEIAARLAAEGLIDYVNVS 249 (343)
T ss_pred CCHHHHhHHHHHHHHHHHHHcCCCCeEEE-E-ee------hhh-------ccCCCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 34443334566777777777655433222 2 11 000 1357888899999999998875434 3331
Q ss_pred E--eccCCCCcccccccCCCCCCcccccHHHHHHHHHhhccCCCceEEEEEEecChhHHHHHHhcccCCcEEEEccCC
Q 003702 658 R--FLPSSEISGEIEADTNDAESTGESADEIFLAEVKQKFKNLEAFKYEERWIKNTSETVDVLGEFNKCHLFLVGRMP 733 (801)
Q Consensus 658 ~--~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~~~~e~~~~l~~~~~~DLvivGr~~ 733 (801)
. .-...... . .......+....-++.+.+++.. +..|...=. +.+.++...++++ .++|+|++||.-
T Consensus 250 ~g~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~-i~~~~~~~~~l~~-~~~D~V~~gR~~ 318 (343)
T cd04734 250 AGSYYTLLGLA-H----VVPSMGMPPGPFLPLAARIKQAV--DLPVFHAGR-IRDPAEAEQALAA-GHADMVGMTRAH 318 (343)
T ss_pred CCCCCcccccc-c----ccCCCCCCcchhHHHHHHHHHHc--CCCEEeeCC-CCCHHHHHHHHHc-CCCCeeeecHHh
Confidence 1 10000000 0 00000111112235566666543 222322111 2345555555543 349999999997
No 220
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=21.61 E-value=3.8e+02 Score=26.98 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=26.5
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEeccC
Q 003702 624 SVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPS 662 (801)
Q Consensus 624 ~~i~v~f~Gg~ddreaL~~a~rma~~~~v~ltvv~~v~~ 662 (801)
.+++++|.||-|. .+|..|....++++.-++|..+
T Consensus 4 gk~l~LlSGGiDS----pVAa~lm~krG~~V~~l~f~~~ 38 (197)
T PF02568_consen 4 GKALALLSGGIDS----PVAAWLMMKRGCEVIALHFDSP 38 (197)
T ss_dssp -EEEEE-SSCCHH----HHHHHHHHCBT-EEEEEEEE-T
T ss_pred ceEEEEecCCccH----HHHHHHHHHCCCEEEEEEEECC
Confidence 4899999999999 5666777677999999999843
No 221
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.57 E-value=2.6e+02 Score=24.82 Aligned_cols=38 Identities=16% Similarity=0.334 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHh
Q 003702 130 GISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFS 167 (801)
Q Consensus 130 ~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls 167 (801)
.+++|.++|..++.++...++.+.......+++|++..
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G 88 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIG 88 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 45677788888888877655433222233445555544
No 222
>COG3748 Predicted membrane protein [Function unknown]
Probab=21.43 E-value=7.9e+02 Score=26.66 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=29.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHH
Q 003702 299 GPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGK 354 (801)
Q Consensus 299 ~~~~~~l~~kl~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K 354 (801)
+.+++.-..|...= +.+-+|+.|+++-=...+..- ...+|..+.++.+.++..|
T Consensus 212 P~~gk~akqRS~HN-nylTLPVlF~MlSNHyp~~~g-t~fnWii~alv~l~gV~IR 265 (407)
T COG3748 212 PKLGKTAKQRSRHN-NYLTLPVLFTMLSNHYPLAFG-TQFNWIIAALVFLMGVLIR 265 (407)
T ss_pred cchhhhhhhhhhhc-ceehHHHHHHHHhccCccccc-CchhHHHHHHHHHHHHHHH
Confidence 34444443333222 256789999887666555432 3357766655555555444
No 223
>KOG3180 consensus Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=21.13 E-value=3.8e+02 Score=26.85 Aligned_cols=92 Identities=14% Similarity=0.059 Sum_probs=50.6
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEEEeccCCCCcccccccCCCCCCcccccHHHHHHHHHhhccCCCceEEEEEEec---C
Q 003702 634 NDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVKQKFKNLEAFKYEERWIK---N 710 (801)
Q Consensus 634 ~ddreaL~~a~rma~~~~v~ltvv~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~---~ 710 (801)
|-|+=|++-|.||-+..-++=++. ++-.... ..+.++..-.+ +-++-...|..-. .
T Consensus 40 PF~eIAvEEAvrlKEk~l~eevia--vs~G~aq-----------------s~~ilRt~LA~--Gadr~~hv~~~~~~~le 98 (254)
T KOG3180|consen 40 PFCEIAVEEAVRLKEKKLAEEVIA--VSIGPAQ-----------------SQEILRTALAK--GADRGVHVEVVGAEELE 98 (254)
T ss_pred chHHHHHHHHHhHhhhhhhheEEE--EecCccc-----------------hHHHHHHHHhc--cCCceeEEecCchhhcc
Confidence 668889999999987654443332 2111111 12344443333 2244445553211 1
Q ss_pred hhHHHHHHhcc---cCCcEEEEccCC-------CchhhcccccCCC
Q 003702 711 TSETVDVLGEF---NKCHLFLVGRMP-------VSRAAAMLKVKSD 746 (801)
Q Consensus 711 ~~e~~~~l~~~---~~~DLvivGr~~-------~~~~~~gl~~w~e 746 (801)
+-.+..++++. ++.||+.+|+.. ..++++||-+|-+
T Consensus 99 pl~vAKiLk~~vekek~~lVllGKQAIDDD~nqTgqmlA~lL~WPQ 144 (254)
T KOG3180|consen 99 PLHVAKILKKLVEKEKSDLVLLGKQAIDDDCNQTGQMLAALLGWPQ 144 (254)
T ss_pred chHHHHHHHHHHHhhcCCEEEEcccccccchhhhHHHHHHHhCCcc
Confidence 22222334433 449999999997 2577889999965
No 224
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=21.13 E-value=1.5e+02 Score=31.36 Aligned_cols=20 Identities=20% Similarity=0.584 Sum_probs=17.9
Q ss_pred HHHhchhHHHHHHHHHhhcc
Q 003702 277 TDSIGIHALFGAFITGVLVP 296 (801)
Q Consensus 277 ae~~g~~~~lgaf~aGl~l~ 296 (801)
.+.+..|+.+|+|+.|+.++
T Consensus 58 ~~fFNT~p~~~~~I~Gi~~a 77 (264)
T PF03613_consen 58 MEFFNTEPFLGPFILGIVLA 77 (264)
T ss_pred HHHHCCCChhhhHHHHHHHH
Confidence 45789999999999999997
No 225
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=20.88 E-value=3.3e+02 Score=29.12 Aligned_cols=69 Identities=7% Similarity=-0.009 Sum_probs=49.8
Q ss_pred ceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEEecCCC
Q 003702 536 RVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDRGL 611 (801)
Q Consensus 536 ~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgilvdrg~ 611 (801)
+..|-.+-... -.+...+++.|++.++..||.-..+.-..- +...+........+++++||++=-|.|.
T Consensus 17 ~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~-----~~~~~~~~~~~~a~~~~VPValHLDHg~ 85 (286)
T PRK12738 17 GYAVPAFNIHN--AETIQAILEVCSEMRSPVILAGTPGTFKHI-----ALEEIYALCSAYSTTYNMPLALHLDHHE 85 (286)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcCcchhhhC-----CHHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 34444444443 478899999999999999998654332111 2234677888999999999999999985
No 226
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=20.86 E-value=6.2e+02 Score=28.50 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=68.9
Q ss_pred EeEEecCCC-ChHHHHHHHHHhcCccEEEecCccccccCCc-ccccchhhHHHHHHHhhcCCCce-EEEecCCCCCCCcc
Q 003702 541 PMTAISAMH-GMHEDICSSAERKRAAMIILPFHKHQRFDGV-LETTRSEFRWVNKRVLEHASCSV-GILVDRGLGGSTHV 617 (801)
Q Consensus 541 ~~~~vs~~~-~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~-~~~~~~~~~~v~~~vl~~apcsV-gilvdrg~~~~~~~ 617 (801)
...+|.|.+ ..-+.-++.|++.+..++|-....+-..+|. .+-....|+....++.++.-+|. -|+.-+.+.|...|
T Consensus 14 gI~sVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~W 93 (420)
T TIGR02810 14 GIYSVCSAHPLVLEAAIRRARASGTPVLIEATSNQVNQFGGYTGMTPADFRDFVETIADRIGFPRDRLILGGDHLGPNPW 93 (420)
T ss_pred eEEEECCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCccc
Confidence 455666433 4455556778889999999999887665554 22244568888889988888886 33333323333222
Q ss_pred ccCCcceEEEEeccCCcChHHHHHHHHHHhhC-CCeEEEEEEecc
Q 003702 618 AASNVSSVITVLFFGGNDDQEALAYGARMAEH-PGISLNVVRFLP 661 (801)
Q Consensus 618 ~~~~~~~~i~v~f~Gg~ddreaL~~a~rma~~-~~v~ltvv~~v~ 661 (801)
+ --..+||.+.|.+|.+. -.+--+.+|+-+
T Consensus 94 q--------------~lpa~eAM~~A~~li~ayV~AGF~kIHLD~ 124 (420)
T TIGR02810 94 Q--------------HLPADEAMAKAAALVDAYVEAGFTKIHLDA 124 (420)
T ss_pred c--------------CCCHHHHHHHHHHHHHHHHHcCCceEEecC
Confidence 2 24789999999999754 244455555543
No 227
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=20.80 E-value=3.8e+02 Score=29.53 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=50.5
Q ss_pred ceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCcccccc-CCc-cccc--------chhhHHHHHHHhhcCCCceEE
Q 003702 536 RVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRF-DGV-LETT--------RSEFRWVNKRVLEHASCSVGI 605 (801)
Q Consensus 536 ~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~-~g~-~~~~--------~~~~~~v~~~vl~~apcsVgi 605 (801)
+.-|-.+-... ..+...|++.|++.++..||.-....-.. .+. ++.. ...+....+...+++++||++
T Consensus 15 ~yAV~AfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPVal 92 (345)
T cd00946 15 GFAIPAVNCTS--SSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVL 92 (345)
T ss_pred CceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEE
Confidence 33343444433 47889999999999999999887643221 111 0100 014677788899999999999
Q ss_pred EecCCCC
Q 003702 606 LVDRGLG 612 (801)
Q Consensus 606 lvdrg~~ 612 (801)
=-|.|..
T Consensus 93 HLDHg~~ 99 (345)
T cd00946 93 HTDHCAK 99 (345)
T ss_pred ECCCCCC
Confidence 9998753
No 228
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=20.76 E-value=24 Score=37.09 Aligned_cols=130 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhh
Q 003702 314 SGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIG 393 (801)
Q Consensus 314 ~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~ 393 (801)
++++=++.|.-+|..+|+..+.....-.+.....=.. +..+++.+...++..+|+-.+|.+=+.-|-.++.+.+..
T Consensus 83 ~~i~PllIFmGvGAmTDFgpllanPktllLGaAAQ~G----IF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~~L 158 (375)
T COG1883 83 SGIFPLLIFMGVGAMTDFGPLLANPKTLLLGAAAQFG----IFATVFGALALGFTPKEAASIGIIGGADGPTAIYLTNKL 158 (375)
T ss_pred cCcccHHHHhccchhcccchhhcCcHHHHhhhHHHhc----hHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEecccc
Q ss_pred ccc--CcCChhHHHHHHHHHHHHHHhHHHHHHHHcccccccchhhhccccccCCCCCCCceEEEEe
Q 003702 394 KDR--KVLNDQTFAIMVLMAVFTTFITTPLVMAVYKPNQKTSKVAYKHRTIKRKDPNSELRIFACF 457 (801)
Q Consensus 394 ~~~--~~i~~~~~~~~v~~~lv~t~i~~pl~~~l~~~~~~~~~~~~~~r~i~~~~~~~elrILv~v 457 (801)
-.. +.+.-..|+-| .+.-++-||+.+.+.-+.+|.. |.+ |..+-....||+.|+
T Consensus 159 AP~Ll~~iAvAAYSYM----ALVPiIQPpimkaLTt~~ERkI-----rM~-qlR~Vsk~EkIlFPi 214 (375)
T COG1883 159 APELLGAIAVAAYSYM----ALVPIIQPPIMKALTTKEERKI-----RMT-QLRTVSKREKILFPI 214 (375)
T ss_pred CHHHHHHHHHHHHHHH----HHhhhcccHHHHHhcCHHHHHh-----hhh-ccccccchhhhhhhH
No 229
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=20.74 E-value=3.1e+02 Score=30.19 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=51.9
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCC-CceEEEecCCC
Q 003702 535 SRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHAS-CSVGILVDRGL 611 (801)
Q Consensus 535 ~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~ap-csVgilvdrg~ 611 (801)
++..|-.+.... -.+...|++.|++.++.+||.-........| ...+..+.+...++++ +||++--|.|.
T Consensus 16 ~~yAVgAfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~~g-----~~~~~~~~~~~a~~~~~VPValHLDHg~ 86 (347)
T PRK09196 16 HGYGVPAFNVNN--LEQVQAIMEAADETDSPVILQASAGARKYAG-----EPFLRHLILAAVEEYPHIPVVMHQDHGN 86 (347)
T ss_pred cCceEEEeeeCC--HHHHHHHHHHHHHhCCCEEEECCccHhhhCC-----HHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 344444555544 4788999999999999999988765432222 2347788888889997 99999999975
No 230
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=20.74 E-value=3.3e+02 Score=29.02 Aligned_cols=69 Identities=19% Similarity=0.194 Sum_probs=50.9
Q ss_pred ceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEEecCCC
Q 003702 536 RVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDRGL 611 (801)
Q Consensus 536 ~v~v~~~~~vs~~~~m~~~I~~~A~~~~a~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgilvdrg~ 611 (801)
+..|-.+.... -.+...+++.|++.++.+||--....-...| -..+....++..+++++||++--|.|.
T Consensus 12 ~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~-----~~~~~~~~~~~a~~~~VPV~lHLDH~~ 80 (276)
T cd00947 12 GYAVGAFNINN--LETLKAILEAAEETRSPVILQISEGAIKYAG-----LELLVAMVKAAAERASVPVALHLDHGS 80 (276)
T ss_pred CceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 34444444443 3789999999999999999987654322222 234777888899999999999999985
No 231
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=20.49 E-value=1.5e+02 Score=29.75 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.6
Q ss_pred EEEEeccCCcChHHHHHHHHH
Q 003702 625 VITVLFFGGNDDQEALAYGAR 645 (801)
Q Consensus 625 ~i~v~f~Gg~ddreaL~~a~r 645 (801)
++++.|.||+|.--|+..+.+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~ 21 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE 21 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH
Confidence 478999999999999988888
No 232
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.20 E-value=5.2e+02 Score=29.50 Aligned_cols=53 Identities=19% Similarity=0.311 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHH--------HHHHHHHHHH
Q 003702 157 PFLIFMGVAFSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVA--------AWILLALAVA 212 (801)
Q Consensus 157 ~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~--------~i~ll~~~~~ 212 (801)
.+.+.+-+..+-||.|-++..+ =..++.+|.++.++++=+.++ -|.+..++..
T Consensus 458 ~eIMGLTiLAAGTSIPDlitSv---IVARKGlGDMAVSsSiGSNiFDI~VGLplPWLL~~lI~~ 518 (588)
T KOG1307|consen 458 DEIMGLTILAAGTSIPDLITSV---IVARKGLGDMAVSSSIGSNIFDILVGLPLPWLLYTLIYG 518 (588)
T ss_pred HHHhhhhhhhcCCchHHhhHhh---hhcccccccceeecccccchhheeecCCcHHHHHHHHhh
Confidence 4455555555668876554432 234567899999988766554 4556555544
Done!