Query 003702
Match_columns 801
No_of_seqs 315 out of 2110
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 18:34:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003702.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1750-1754//hhsearch_pdb/003702hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 1.0 1 1 200.8 7.7 303 90-426 58-384 (388)
2 3olq_A Universal stress protei 1.0 1 1 174.7 14.9 290 450-777 7-309 (319)
3 3mt0_A Uncharacterized protein 1.0 1 1 173.7 21.4 265 450-775 7-278 (290)
4 3loq_A Universal stress protei 1.0 1 1 171.0 14.8 270 450-775 22-292 (294)
5 3cis_A Uncharacterized protein 1.0 1 1 169.6 15.3 281 449-774 18-307 (309)
6 3ab8_A Putative uncharacterize 1.0 1 1 158.4 16.3 260 452-772 2-268 (268)
7 3hgm_A Universal stress protei 1.0 1 1 99.5 5.8 142 451-606 3-147 (147)
8 3s3t_A Nucleotide-binding prot 1.0 1 1 99.3 8.8 137 450-606 5-145 (146)
9 3fg9_A Protein of universal st 1.0 1 1 97.8 5.3 139 448-606 13-155 (156)
10 3fdx_A Putative filament prote 1.0 1 1 96.6 9.6 136 451-606 2-142 (143)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=1.00 E-value=1 Score=200.82 Aligned_cols=303 Identities=18% Similarity=0.211 Sum_probs=211.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 899999999999999887113492679----86003--689999999999999999999998732117999246999999
Q 003702 90 TVLDTLANLGLLFFLFLVGLEMDPKSI----RRAGK--KALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMG 163 (801)
Q Consensus 90 ~~l~~l~~igl~~llF~~Gle~d~~~l----~~~~~--~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~ 163 (801)
.....+.+-.+.+|||.+|+|+|.+.+ ++.+| .....+..|+++|++++.. +.. .. +.+....
T Consensus 58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~~----~~~----~~---~~~~~gw 126 (388)
T 1zcd_A 58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLA----FNY----AD---PITREGW 126 (388)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG----GCC----SS---TTHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHC----CC---HHHHHHH
T ss_conf 699998657499999999998219984311222456789999999989999999999----814----87---2565556
Q ss_pred HHHHHCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9994222999999998628-568925899999999978999999999999950899864699999999999999999989
Q 003702 164 VAFSITAFPVLARILAELK-LLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVT 242 (801)
Q Consensus 164 ~~ls~Ts~~vv~~iL~el~-ll~s~~g~l~ls~a~i~D~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 242 (801)
.+...||.+....++..++ ..++..+..+++.+++||+.+|++++++.. ++ . ... .+...+++.+..
T Consensus 127 ~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~-~--~~~-~l~~~~~~~~~~----- 194 (388)
T 1zcd_A 127 AIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---ND-L--SMA-SLGVAAVAIAVL----- 194 (388)
T ss_dssp SSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CC-C--CHH-HHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-C--CHH-HHHHHHHHHHHH-----
T ss_conf 99999799999999999974276179999999999999999999987774---87-5--389-999999999999-----
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHHHH
Q ss_conf 999999966699987533779999999999999999841347799998775256988----7058999998877888789
Q 003702 243 PIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEG----PFAGALVEKVEDLVSGLLL 318 (801)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~~~g~~~~lgaf~aGl~~~~~~----~~~~~l~~kl~~~~~~~~~ 318 (801)
+..+|.. .+....+..+ .+ ...+.++..|.|+.+|+|++|+++|+.+ +..+++++++++++..+++
T Consensus 195 ----~~l~r~~----v~~~~~y~~l-gl-~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~il 264 (388)
T 1zcd_A 195 ----AVLNLCG----ARRTGVYILV-GV-VLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLIL 264 (388)
T ss_dssp ----HHHHHTT----CCCTHHHHHH-HH-HHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHH
T ss_pred ----HHHHHHC----CHHHHHHHHH-HH-HHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf ----9998865----3458999999-99-999999982852999999999854677766789899999998998999999
Q ss_pred HHH-HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999-98752343310101034688999999999999999999989870----------8995789999999843359999
Q 003702 319 PLY-FVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLAC----------RIPFKEALALGFLMNTKGLVEL 387 (801)
Q Consensus 319 Plf-F~~~G~~~d~~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~kG~v~l 387 (801)
|+| |+..|.++|......... +....+.+..+++|++|++..++.. +++|+|...+|++++.++++++
T Consensus 265 PlFaFanaGv~l~~~~~~~l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL 343 (388)
T 1zcd_A 265 PLFAFANAGVSLQGVTLDGLTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSI 343 (388)
T ss_dssp HHHHHHHCCCCCSSSCCCTHHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHH
T ss_pred HHHHHHHCCEEECCCCHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999984582423650664117-399999999999999999999999999666769999989999999998242058999
Q ss_pred HHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99984024676--7745799999999999996799999870
Q 003702 388 IVLNIGKDRKV--LNDQTFAIMVLMAVFTTFITTPLVMAVY 426 (801)
Q Consensus 388 ~l~~~~~~~~i--i~~~~~~~lv~~~il~t~i~~pl~~~~~ 426 (801)
++++.+.+.+. +.++.+..+++.+++++++.+.++++.+
T Consensus 344 ~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~ 384 (388)
T 1zcd_A 344 FIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL 384 (388)
T ss_dssp HHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99998625881556765999999999999999999999863
No 2
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=1.00 E-value=1 Score=174.71 Aligned_cols=290 Identities=12% Similarity=0.085 Sum_probs=185.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCC-HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 84388984268993689999997359998998379999942116875-14677742002899766778888630589999
Q 003702 450 ELRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERS-SAILMVHKARKNGVPFWNKGKRSDCDQVVVAF 528 (801)
Q Consensus 450 elriLv~i~~~~~~~~~i~ll~~~~~~~~~~~~~v~~lhlvel~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 528 (801)
--+||+|+++++++..++..+..++ +..+..++++|+++..... ...+-....+...... .+..++.++.+
T Consensus 7 ~k~ILv~~D~s~~s~~al~~A~~lA---~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~ 78 (319)
T 3olq_A 7 YQNLLVVIDPNQDDQPALRRAVYIV---QRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGV-----INQKTAWIKQQ 78 (319)
T ss_dssp SCEEEEECCTTCSCCHHHHHHHHHH---HHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH---HHCCCEEEEEEEECCCCHHHCCCCCHHHHHHHHHHH-----HHHHHHHHHHH
T ss_conf 1639999789756589999999999---972992899997236443221236734589999999-----99999999999
Q ss_pred HHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 99762264489986984379973898999988339559995276566568842344221189999985008995499835
Q 003702 529 EAFRQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVD 608 (801)
Q Consensus 529 ~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~~~~adlIilp~h~~~~~dg~~~~~~~~~~~vn~~Vl~~ApCsV~ilvd 608 (801)
.......++.++...... ++..+.|++.|++.++||||||+|++...++.+ +|++..+|++++||||.++.+
T Consensus 79 ~~~~~~~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~~ 150 (319)
T 3olq_A 79 ARYYLEAGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLI------FTPLDWQLLRKCPAPVWMVKD 150 (319)
T ss_dssp HHHHHHTTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCB------CCHHHHHHHHHCSSCEEEEES
T ss_pred HHHHHHCCCEEEEEEEEC--CCHHHHHHHHHHHCCCCEEEEECCCCCHHHCCC------CCCCHHHHHHCCCCCEEEECC
T ss_conf 998750598389999965--985999999998529998999267676222000------066478897459987899637
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCC-------HHHHHHHHHHHHHCC--CEEEEEEEECCCCCCCCCCCCCCCCC---
Q ss_conf 999988764467762179991368918-------499999999985199--92999998015888766544567887---
Q 003702 609 RGLGGSTHVAASNVSSVITVLFFGGND-------DQEALAYGARMAEHP--GISLNVVRFLPSSEISGEIEADTNDA--- 676 (801)
Q Consensus 609 rg~~~~~~~~~~~~~~~I~v~f~Gg~d-------dreAL~~a~rla~~~--~v~ltvir~~~~~~~~~~~~~~~~~~--- 676 (801)
+. .....+|+++++|.++ ++.|+.+|.++++.. +.+++++++.++..............
T Consensus 151 ~~---------~~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~ 221 (319)
T 3olq_A 151 KE---------WPEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLY 221 (319)
T ss_dssp SC---------CCTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHH
T ss_pred CC---------CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHCCCCCCCHHHH
T ss_conf 65---------666780899978987433688998999999999997456897089999615853544314885457899
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 77543308999999986415999568999971691589999710148868998158870110014667889843322222
Q 003702 677 ESTGESADEIFLAEVKQKFKNLEAFKYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSL 756 (801)
Q Consensus 677 ~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~~~~~l~~~~~~DLiiVGr~~~~~~~~gl~~w~e~peLG~igd~ 756 (801)
.+..++..++.++++..+... ..+.+. ....+..+.+....+..++||+++|+++ ..++.+| .+|.+.+.
T Consensus 222 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~-v~~g~~~~~I~~~a~~~~~dLiV~G~~g----~~~~~~~----~~Gsv~~~ 291 (319)
T 3olq_A 222 NNALRGQHLIAMKELRQKFSI-PEEKTH-VKEGLPEQVIPQVCEELNAGIVVLGILG----RTGLSAA----FLGNTAEQ 291 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-CGGGEE-EEESCHHHHHHHHHHHTTEEEEEEECCS----CCSTHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCC-CCCCEE-EECCCCHHHHHHHHHHHCCCEEEEECCC----CCCCCCC----CCCHHHHH
T ss_conf 999999999999999998289-956179-8348808999999987389999995057----6677640----02179999
Q ss_pred CCCCCCCCCEEEEEEEECCCC
Q ss_conf 234899962008999721579
Q 003702 757 LISPDFSTSASVLVVQQYVGQ 777 (801)
Q Consensus 757 las~d~~~~~svLvvqq~~~~ 777 (801)
+... ++++||||..+...
T Consensus 292 vl~~---~~~pVLvv~~~~~~ 309 (319)
T 3olq_A 292 LIDH---IKCDLLAIKPDGFT 309 (319)
T ss_dssp HHTT---CCSEEEEECCTTCC
T ss_pred HHHH---CCCCEEEECCCCCC
T ss_conf 9851---89988998988887
No 3
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=1.00 E-value=1 Score=173.70 Aligned_cols=265 Identities=11% Similarity=0.052 Sum_probs=183.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 84388984268993689999997359998998379999942116875146777420028997667788886305899999
Q 003702 450 ELRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFE 529 (801)
Q Consensus 450 elriLv~i~~~~~~~~~i~ll~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 529 (801)
--+||+|+++++....++..+..++ +..+..++++|+++ +. . .++.++.+.
T Consensus 7 ~~~ILv~~D~s~~s~~al~~A~~la---~~~~a~l~ll~v~~-~~------------------------~-~~~~l~~~~ 57 (290)
T 3mt0_A 7 IRSILVVIEPDQLEGLALKRAQLIA---GVTQSHLHLLVCEK-RR------------------------D-HSAALNDLA 57 (290)
T ss_dssp CCEEEEECCSSCSCCHHHHHHHHHH---HHHCCEEEEEEECS-SS------------------------C-CHHHHHHHH
T ss_pred HCEEEEEECCCCCCHHHHHHHHHHH---HHCCCEEEEEEEEC-CH------------------------H-HHHHHHHHH
T ss_conf 2059999589856469999999999---85298499999608-48------------------------8-999999999
Q ss_pred HHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 97622644899869843799738989999883395599952765665688423442211899999850089954998359
Q 003702 530 AFRQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDR 609 (801)
Q Consensus 530 ~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~~~~adlIilp~h~~~~~dg~~~~~~~~~~~vn~~Vl~~ApCsV~ilvdr 609 (801)
+.....++.++.....+ ++..+.|++.|++.++||||||.|++...++.+ +|++..++++++||||.++...
T Consensus 58 ~~~~~~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~------~gs~~~~vl~~~~~PVlvv~~~ 129 (290)
T 3mt0_A 58 QELREEGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAI------LTPDDWKLLRFAPCPVLMTKTA 129 (290)
T ss_dssp HHHHHTTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTS------CCHHHHHHHHHCSSCEEEECCC
T ss_pred HHHHHCCCEEEEEEEEC--CCHHHHHHHHHHHCCCCEEEEECCCCCCHHHCC------CCHHHHHHHHCCCCCEEEECCC
T ss_conf 98762797589999967--987999999998459999999145687322102------1777899986399878995278
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCC-------HHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99988764467762179991368918-------49999999998519992999998015888766544567887775433
Q 003702 610 GLGGSTHVAASNVSSVITVLFFGGND-------DQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGES 682 (801)
Q Consensus 610 g~~~~~~~~~~~~~~~I~v~f~Gg~d-------dreAL~~a~rla~~~~v~ltvir~~~~~~~~~~~~~~~~~~~~~~~~ 682 (801)
. .. ..++|+++++|.++ ++.|+.+|.++++..+.+++++++.++.......+ .....+..++
T Consensus 130 -~-------~~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~--~~~~~~~~~~ 198 (290)
T 3mt0_A 130 -R-------PW-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADP--TFQLSETIEA 198 (290)
T ss_dssp -S-------CS-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC-----------CHHHHHHHHH
T ss_pred -C-------CC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCC--HHHHHHHHHH
T ss_conf -7-------77-78839999778876504667899999999999987398699999966764334572--2578999999
Q ss_pred CHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 08999999986415999568999971691589999710148868998158870110014667889843322222234899
Q 003702 683 ADEIFLAEVKQKFKNLEAFKYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDF 762 (801)
Q Consensus 683 ~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~~~~~l~~~~~~DLiiVGr~~~~~~~~gl~~w~e~peLG~igd~las~d~ 762 (801)
..++.++++..+... ..+.+ .....+..+.+....+..++||+++|+++ ..++.+| .+|.+.+.+...
T Consensus 199 ~~~~~l~~~~~~~g~-~~~~~-~v~~g~~~~~I~~~a~~~~~dLiVmG~~g----~~~~~~~----~~Gsv~~~vl~~-- 266 (290)
T 3mt0_A 199 RYREACRTFQAEYGF-SDEQL-HIEEGPADVLIPRTAQKLDAVVTVIGTVA----RTGLSGA----LIGNTAEVVLDT-- 266 (290)
T ss_dssp HHHHHHHHHHHHHTC-CTTTE-EEEESCHHHHHHHHHHHHTCSEEEEECCS----SCCGGGC----CSCHHHHHHHTT--
T ss_pred HHHHHHHHHHHHCCC-CCCEE-EEECCCHHHHHHHHHHHCCCCEEEECCCC----CCCCCCE----ECCHHHHHHHHC--
T ss_conf 999999999998199-94369-99335888999999876299999978888----7677553----435589999962--
Q ss_pred CCCEEEEEEEECC
Q ss_conf 9620089997215
Q 003702 763 STSASVLVVQQYV 775 (801)
Q Consensus 763 ~~~~svLvvqq~~ 775 (801)
++++||||..+.
T Consensus 267 -~~~pVLvv~~~~ 278 (290)
T 3mt0_A 267 -LESDVLVLKPDD 278 (290)
T ss_dssp -CSSEEEEECCHH
T ss_pred -CCCCEEEECCCC
T ss_conf -899889989877
No 4
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=171.01 Aligned_cols=270 Identities=10% Similarity=0.050 Sum_probs=178.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 84388984268993689999997359998998379999942116875146777420028997667788886305899999
Q 003702 450 ELRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFE 529 (801)
Q Consensus 450 elriLv~i~~~~~~~~~i~ll~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 529 (801)
--+||+|+++++.+..+++.+..++ +..+..++++|+++.+...... . ........+ ...+..++.++.+.
T Consensus 22 ~~~ILv~vD~s~~s~~al~~A~~lA---~~~~a~l~ll~v~~~~~~~~~~---~--~~~~~~~~~-~~~~~~~~~l~~~~ 92 (294)
T 3loq_A 22 SNAMLLPTDLSENSFKVLEYLGDFK---KVGVEEIGVLFVINLTKLSTVS---G--GIDIDHYID-EMSEKAEEVLPEVA 92 (294)
T ss_dssp TCEEEEECCSCTGGGGGGGGHHHHH---HTTCCEEEEECCEECTTC----------CCCTTHHHH-HHHHHHHHHHHHHH
T ss_pred HCCEEEECCCCHHHHHHHHHHHHHH---HHCCCEEEEEEEECCCCCCCCC---C--CCCHHHHHH-HHHHHHHHHHHHHH
T ss_conf 5308995179888999999999987---5169889999982476644445---5--646899999-99999999999999
Q ss_pred HHHHCCCEEEEE-EEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 976226448998-6984379973898999988339559995276566568842344221189999985008995499835
Q 003702 530 AFRQLSRVFIRP-MTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVD 608 (801)
Q Consensus 530 ~~~~~~~v~v~~-~~~vs~~~~~~~dI~~~A~~~~adlIilp~h~~~~~dg~~~~~~~~~~~vn~~Vl~~ApCsV~ilvd 608 (801)
+.....++.++. .+. ..+++.+.| .|++.++|+||||.|++....+ ..+|++.++|++++||||.++.+
T Consensus 93 ~~~~~~g~~~~~~~v~--~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~------~~~Gs~~~~vl~~~~~PVlvv~~ 162 (294)
T 3loq_A 93 QKIEAAGIKAEVIKPF--PAGDPVVEI--IKASENYSFIAMGSRGASKFKK------ILLGSVSEGVLHDSKVPVYIFKH 162 (294)
T ss_dssp HHHHHTTCEEEECSSC--CEECHHHHH--HHHHTTSSEEEEECCCCCHHHH------HHHCCHHHHHHHHCSSCEEEECC
T ss_pred HHHHHCCCCCCEEEEE--CCCCHHHHE--EECCCCCCEEEECCCCCCCCCC------EEECCHHHHHHHCCCCCEEEECC
T ss_conf 9999769985046761--357803712--5545899999984798765314------56442789997457998899667
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99998876446776217999136891849999999998519992999998015888766544567887775433089999
Q 003702 609 RGLGGSTHVAASNVSSVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFL 688 (801)
Q Consensus 609 rg~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~a~rla~~~~v~ltvir~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 688 (801)
.. . ......+|+++++|.+.+++|+.+|.++++..+.+++++++.++.. .++.-+++.
T Consensus 163 ~~-~------~~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~---------------~~~~l~~~~ 220 (294)
T 3loq_A 163 DM-V------VNSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD---------------KTADLRVME 220 (294)
T ss_dssp CT-T------TTCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC---------------CHHHHHHHH
T ss_pred CC-C------CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH---------------HHHHHHHHH
T ss_conf 55-6------6766777999978987999999999997630399899999745803---------------899999999
Q ss_pred HHHHHHCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99986415999568999971691589999710148868998158870110014667889843322222234899962008
Q 003702 689 AEVKQKFKNLEAFKYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASV 768 (801)
Q Consensus 689 ~~~~~~~~~~~~v~y~e~~v~~g~~~~~~l~~~~~~DLiiVGr~~~~~~~~gl~~w~e~peLG~igd~las~d~~~~~sv 768 (801)
+.+... ...+.+ .....+..+.+....+..++||+++|+++ ..++.+| .+|.+.+.+... ++++|
T Consensus 221 ~~l~~~---~~~~~~-~~~~g~~~~~I~~~a~~~~~dLlV~G~~~----~~~~~~~----~~Gs~~~~vl~~---~~~pv 285 (294)
T 3loq_A 221 EVIGAE---GIEVHV-HIESGTPHKAILAKREEINATTIFMGSRG----AGSVMTM----ILGSTSESVIRR---SPVPV 285 (294)
T ss_dssp HHHHHT---TCCEEE-EEECSCHHHHHHHHHHHTTCSEEEEECCC----CSCHHHH----HHHCHHHHHHHH---CSSCE
T ss_pred HHHHHC---CCCEEE-EEECCCHHHHHHHHHHHCCCCEEEEECCC----CCCCCCE----EECCHHHHHHHC---CCCCE
T ss_conf 999876---995799-99369878999999976595999995799----9876535----627689999964---99989
Q ss_pred EEEEECC
Q ss_conf 9997215
Q 003702 769 LVVQQYV 775 (801)
Q Consensus 769 Lvvqq~~ 775 (801)
|||.+..
T Consensus 286 Lvv~~~~ 292 (294)
T 3loq_A 286 FVCKRGD 292 (294)
T ss_dssp EEECSCT
T ss_pred EEECCCC
T ss_conf 9978999
No 5
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=1.00 E-value=1 Score=169.58 Aligned_cols=281 Identities=14% Similarity=0.111 Sum_probs=177.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCHHH-HHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 984388984268993689999997359998998379999942116875146-7774200289976677888863058999
Q 003702 449 SELRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAI-LMVHKARKNGVPFWNKGKRSDCDQVVVA 527 (801)
Q Consensus 449 ~elriLv~i~~~~~~~~~i~ll~~~~~~~~~~~~~v~~lhlvel~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 527 (801)
...+||+|+++++....+++.+..++ +..+..++++|+++......+. ..+.+.... . .+..++.++.
T Consensus 18 ~~~~ILv~~D~s~~s~~al~~A~~lA---~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~l~~ 86 (309)
T 3cis_A 18 SSLGIIVGIDDSPAAQVAVRWAARDA---ELRKIPLTLVHAVSPEVATWLEVPLPPGVLRW----Q----QDHGRHLIDD 86 (309)
T ss_dssp CTTEEEEECCSSHHHHHHHHHHHHHH---HHHTCCEEEEEECCCCCCCTTCCCCCHHHHHH----H----HHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHH---HHCCCCEEEEEEECCCCCCCCCCCCCCHHHHH----H----HHHHHHHHHH
T ss_conf 78708999799877999999999999---86699299999965754445667788205689----9----9999999999
Q ss_pred HHH-HHHC----CCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 999-7622----64489986984379973898999988339559995276566568842344221189999985008995
Q 003702 528 FEA-FRQL----SRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCS 602 (801)
Q Consensus 528 ~~~-~~~~----~~v~v~~~~~vs~~~~~~~dI~~~A~~~~adlIilp~h~~~~~dg~~~~~~~~~~~vn~~Vl~~ApCs 602 (801)
+.+ +.+. .++.++..+.. ++..+.|++.|+ ++||||||.|++....+.+ +|++.++|++++|||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~P 155 (309)
T 3cis_A 87 ALKVVEQASLRAGPPTVHSEIVP---AAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRL------LGSVSSGLLRHAHCP 155 (309)
T ss_dssp HHHHHHHHCSSSCCSCEEEEEES---SCHHHHHHHHGG--GEEEEEEESSCTTCCTTCC------SCHHHHHHHHHCSSC
T ss_pred HHHHHHHHCCCCCCCEEEEEEEC---CCHHHHHHHHHC--CCCEEEECCCCCCCCCCCC------CCCHHHHHHHHCCCC
T ss_conf 99999873156889538999944---898999998725--8999998789986544430------574799999848997
Q ss_pred EEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 49983599998876446776217999136891849999999998519992999998015888766544567887775433
Q 003702 603 VGILVDRGLGGSTHVAASNVSSVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGES 682 (801)
Q Consensus 603 V~ilvdrg~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~a~rla~~~~v~ltvir~~~~~~~~~~~~~~~~~~~~~~~~ 682 (801)
|.++...... .......+|+++++|++.++.|+.+|.++++..+.+++++++.++.... ... ....+..++
T Consensus 156 Vlvv~~~~~~-----~~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~-~~~---~~~~~~~~~ 226 (309)
T 3cis_A 156 VVIIHDEDSV-----MPHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVS-EWP---GIDWPATQS 226 (309)
T ss_dssp EEEECTTCCC-----SCSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCT-TCS---SCCHHHHHH
T ss_pred EEEECCCCCC-----CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCC-CCC---CCCHHHHHH
T ss_conf 8997477666-----7777787399992798689999999999987569989999996165446-778---545788999
Q ss_pred CHHHHHHHHHHHCC---CCCCEEEEEEEECCHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 08999999986415---999568999971691589999710148868998158870110014667889843322222234
Q 003702 683 ADEIFLAEVKQKFK---NLEAFKYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLIS 759 (801)
Q Consensus 683 ~d~~~l~~~~~~~~---~~~~v~y~e~~v~~g~~~~~~l~~~~~~DLiiVGr~~~~~~~~gl~~w~e~peLG~igd~las 759 (801)
..++.+++...... ....+.+. ...++..+ .+++...++||+++|+++ ..++.++ -+|.+.+.+..
T Consensus 227 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~g~~~~--~I~~~a~~adliV~G~~~----~~~~~~~----l~Gsv~~~vl~ 295 (309)
T 3cis_A 227 MAEQVLAERLAGWQERYPNVAITRV-VVRDQPAR--QLVQRSEEAQLVVVGSRG----RGGYAGM----LVGSVGETVAQ 295 (309)
T ss_dssp HHHHHHHHHHTTHHHHCTTSCEEEE-EESSCHHH--HHHHHHTTCSEEEEESSC----SSCCTTC----SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHH--HHHHHHCCCCEEEECCCC----CCCCCCC----CCCCHHHHHHH
T ss_conf 9999999999998864899718999-97179899--999863779999988899----8776413----32748999985
Q ss_pred CCCCCCEEEEEEEEC
Q ss_conf 899962008999721
Q 003702 760 PDFSTSASVLVVQQY 774 (801)
Q Consensus 760 ~d~~~~~svLvvqq~ 774 (801)
. +.++||||..+
T Consensus 296 ~---~~~pVlvv~~~ 307 (309)
T 3cis_A 296 L---ARTPVIVARES 307 (309)
T ss_dssp H---CSSCEEEECC-
T ss_pred C---CCCCEEEECCC
T ss_conf 6---99888995798
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=1.00 E-value=1 Score=158.35 Aligned_cols=260 Identities=14% Similarity=0.050 Sum_probs=167.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCC--C----CCCCCCCCCHHH
Q ss_conf 3889842689936899999973599989983799999421168751467774200289976--6----778888630589
Q 003702 452 RIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPF--W----NKGKRSDCDQVV 525 (801)
Q Consensus 452 riLv~i~~~~~~~~~i~ll~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~i~ 525 (801)
+||+|+++++....+++.+..++ +..+..++++|+++......... .......... . .+...+..++.+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA---~~~~a~l~ll~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 76 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLA---YKLSAPLTVLFVVDTRLARIPEL--LDFGALTVPVPVLRTELERALALRGEAVL 76 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHH---HHHTCCEEEEEEEEHHHHTHHHH--C-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHH---HHHCCCEEEEEEECCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 28998478777899999999999---97099399999950577665543--47067789988777888899999999999
Q ss_pred HHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCEE
Q ss_conf 99999762264489986984379973898999988339559995276566-56884234422118999998500899549
Q 003702 526 VAFEAFRQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQ-RFDGVLETTRSEFRWVNKRVLEHASCSVG 604 (801)
Q Consensus 526 ~~~~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~~~~adlIilp~h~~~-~~dg~~~~~~~~~~~vn~~Vl~~ApCsV~ 604 (801)
+.+.+..+..++.++..+..+ ++.+.|++. +.++||||||.|++. ...+.+ +|++.++|++++||||.
T Consensus 77 ~~~~~~~~~~g~~~~~~~~~g---~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~------~Gs~~~~v~~~a~~PVl 145 (268)
T 3ab8_A 77 ERVRQSALAAGVAVEAVLEEG---VPHEAILRR--ARAADLLVLGRSGEAHGDGFGG------LGSTADRVLRASPVPVL 145 (268)
T ss_dssp HHHHHHHHHTTCCEEEEEEEE---CHHHHHHHH--HTTCSEEEEESSCTTSCTTCCS------CCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHCCCCEEEEEECC---CHHHHHHHH--CCCCCEEEEECCCCCCCCCCCC------CCHHHHHHHHHCCCCEE
T ss_conf 999999985799718987069---878999961--4699889992667876533345------46669999984799889
Q ss_pred EEECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 98359999887644677621799913689184999999999851999299999801588876654456788777543308
Q 003702 605 ILVDRGLGGSTHVAASNVSSVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGESAD 684 (801)
Q Consensus 605 ilvdrg~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~a~rla~~~~v~ltvir~~~~~~~~~~~~~~~~~~~~~~~~~d 684 (801)
++... . . ...+|+++++|+++++.|+.++.++++..+.+++++++.++.+. .++..
T Consensus 146 vv~~~-~-------~--~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~~--------------~~~~l 201 (268)
T 3ab8_A 146 LAPGE-P-------V--ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPAR--------------AEAWA 201 (268)
T ss_dssp EECSS-C-------C--CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHHH--------------HHHHH
T ss_pred EECCC-C-------C--CCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHH--------------HHHHH
T ss_conf 97888-7-------8--77789999789878999999999965207987999997284788--------------99999
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999998641599956899997169158999971014886899815887011001466788984332222223489996
Q 003702 685 EIFLAEVKQKFKNLEAFKYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFST 764 (801)
Q Consensus 685 ~~~l~~~~~~~~~~~~v~y~e~~v~~g~~~~~~l~~~~~~DLiiVGr~~~~~~~~gl~~w~e~peLG~igd~las~d~~~ 764 (801)
++..+.+... ...+.+. +.+|.....+++...++||+++|+ + +.+| -+|.+.+.+... +
T Consensus 202 ~~~~~~l~~~---~~~~~~~---~~~g~~~~~i~~~a~~~dliV~G~-~-------~~~~----~~Gs~~~~vl~~---~ 260 (268)
T 3ab8_A 202 LEAEAYLRDH---GVEASAL---VLGGDAADHLLRLQGPGDLLALGA-P-------VRRL----VFGSTAERVIRN---A 260 (268)
T ss_dssp HHHHHHHHHT---TCCEEEE---EECSCHHHHHHHHCCTTEEEEEEC-C-------CSCC----SSCCHHHHHHHH---C
T ss_pred HHHHHHHHHC---CCCEEEE---EECCCHHHHHHHHHHHCCEEEECC-C-------CCCC----EECCHHHHHHHC---C
T ss_conf 9999999875---9946999---917985999999997699999998-6-------1326----866279999855---9
Q ss_pred CEEEEEEE
Q ss_conf 20089997
Q 003702 765 SASVLVVQ 772 (801)
Q Consensus 765 ~~svLvvq 772 (801)
+++||||.
T Consensus 261 ~~pvlvv~ 268 (268)
T 3ab8_A 261 QGPVLTAR 268 (268)
T ss_dssp SSCEEEEC
T ss_pred CCCEEEEC
T ss_conf 99889939
No 7
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=1.00 E-value=1 Score=99.47 Aligned_cols=142 Identities=13% Similarity=0.123 Sum_probs=93.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 43889842689936899999973599989983799999421168751467774200289976677888863058999999
Q 003702 451 LRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFEA 530 (801)
Q Consensus 451 lriLv~i~~~~~~~~~i~ll~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 530 (801)
-+||+|+++++++..++..+..++ +..+..++++|+++.+................ .. .+...+..++.++.+.+
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la---~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~~~~ 77 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQ---QLTGAELYILCVFKHHSLLEASLSMARPEQLD-IP-DDALKDYATEIAVQAKT 77 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHH---HHHCCEEEEEEEECCHHHHHHTBSSCCCGGGC-CC-TTHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHH---HHCCCEEEEEEEECCCCCCCCCCCCCCHHHHH-HH-HHHHHHHHHHHHHHHHH
T ss_conf 429998589777899999999999---75499899999945755443100136703566-67-99999999999999999
Q ss_pred HHHCCCEEE---EEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 762264489---9869843799738989999883395599952765665688423442211899999850089954998
Q 003702 531 FRQLSRVFI---RPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGIL 606 (801)
Q Consensus 531 ~~~~~~v~v---~~~~~vs~~~~~~~dI~~~A~~~~adlIilp~h~~~~~dg~~~~~~~~~~~vn~~Vl~~ApCsV~il 606 (801)
..+..++.+ +.....+ ++.+.|++.|++.++||||||.|++....+.+ +|++.++|++++||||.++
T Consensus 78 ~~~~~g~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 78 RATELGVPADKVRAFVKGG---RPSRTIVRFARKRECDLVVIGAQGTNGDKSLL------LGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HHHHTTCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEECSSCTTCCSCCC------CCHHHHHHHHHCSSCEEEC
T ss_pred HHHHCCCCCCCEEEEEECC---CHHHHHHHHHHHHCCCEEEEECCCCCCCCCEE------ECCHHHHHHHHCCCCEEEC
T ss_conf 9986699865317899548---87999999999809999999379876530225------5338999996289988979
No 8
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=1.00 E-value=1 Score=99.34 Aligned_cols=137 Identities=10% Similarity=0.104 Sum_probs=97.6
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCHHHH--HHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 843889842689936899999973599989983799999421168751467--774200289976677888863058999
Q 003702 450 ELRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAIL--MVHKARKNGVPFWNKGKRSDCDQVVVA 527 (801)
Q Consensus 450 elriLv~i~~~~~~~~~i~ll~~~~~~~~~~~~~v~~lhlvel~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~ 527 (801)
--+||+|+++++....+++.+..++ +..+..++++|+++.+....... ...+.... . .+..++.++.
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la---~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~l~~ 73 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIA---QRHQANLTALYVVDDSAYHTPALDPVLSELLDA----E----AAHAKDAMRQ 73 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHH---HHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHH----H----HHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHH---HHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHH----H----HHHHHHHHHH
T ss_conf 6669997479988999999999999---861998999999627544554444240899999----9----9999999999
Q ss_pred HHHHHHCCCE-EEEEEEEECCCCCHHHHHHH-HHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 9997622644-89986984379973898999-988339559995276566568842344221189999985008995499
Q 003702 528 FEAFRQLSRV-FIRPMTAISAMHGMHEDICS-SAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGI 605 (801)
Q Consensus 528 ~~~~~~~~~v-~v~~~~~vs~~~~~~~dI~~-~A~~~~adlIilp~h~~~~~dg~~~~~~~~~~~vn~~Vl~~ApCsV~i 605 (801)
+.+..+..++ .++..+..+ ++.+.|++ .|++.++||||||.|++....+.+ +|++.++|++++||||.+
T Consensus 74 ~~~~~~~~g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlv 144 (146)
T 3s3t_A 74 RQQFVATTSAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVA------VGSTTSYVVDHAPCNVIV 144 (146)
T ss_dssp HHHHHTTSSCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCS------SCHHHHHHHHHCSSEEEE
T ss_pred HHHHHHHCCCCCEEEEEECC---CHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEE------ECCHHHHHHCCCCCCEEE
T ss_conf 99999865975259999538---848999999886539999998899998761278------734588996149999898
Q ss_pred E
Q ss_conf 8
Q 003702 606 L 606 (801)
Q Consensus 606 l 606 (801)
+
T Consensus 145 V 145 (146)
T 3s3t_A 145 I 145 (146)
T ss_dssp E
T ss_pred E
T ss_conf 4
No 9
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=1.00 E-value=1 Score=97.81 Aligned_cols=139 Identities=9% Similarity=0.060 Sum_probs=94.6
Q ss_pred CCCCEEEEEEC--CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 99843889842--6899368999999735999899837999994211687514677742002899766778888630589
Q 003702 448 NSELRIFACFH--TASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVV 525 (801)
Q Consensus 448 ~~elriLv~i~--~~~~~~~~i~ll~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 525 (801)
..--+||+|++ +++....+++.+..++ +..+..++++|+++.+..........+.... . .+..++.+
T Consensus 13 ~~~~~ILv~vD~~~s~~s~~al~~a~~la---~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~----~----~~~~~~~l 81 (156)
T 3fg9_A 13 LVYRRILLTVDEDDNTSSERAFRYATTLA---HDYDVPLGICSVLESEDINIFDSLTPSKIQA----K----RKHVEDVV 81 (156)
T ss_dssp CCCC-EEEECCSCCCHHHHHHHHHHHHHH---HHHTCCEEEEEEECCCCTTCCCSSHHHHHHH----H----HHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHH---HHCCCEEEEEEEEECCCCCCCCCCCHHHHHH----H----HHHHHHHH
T ss_conf 56754999978999989999999999999---7659989999997378756544479789999----9----99999999
Q ss_pred HHHHHHHHCCCE-EEEEEEEECCCCCHHHHHHHH-HHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
Q ss_conf 999997622644-899869843799738989999-883395599952765665688423442211899999850089954
Q 003702 526 VAFEAFRQLSRV-FIRPMTAISAMHGMHEDICSS-AERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSV 603 (801)
Q Consensus 526 ~~~~~~~~~~~v-~v~~~~~vs~~~~~~~dI~~~-A~~~~adlIilp~h~~~~~dg~~~~~~~~~~~vn~~Vl~~ApCsV 603 (801)
+.+.+..+..++ .++..+..+ +++.+.|++. |++.++||||||.|++...+ . .+|++.++|++++||||
T Consensus 82 ~~~~~~~~~~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~------~~Gs~~~~vl~~a~~PV 152 (156)
T 3fg9_A 82 AEYVQLAEQRGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS-K------IAGAIGPRLARKAPISV 152 (156)
T ss_dssp HHHHHHHHHHTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-S------SCSCHHHHHHHHCSSEE
T ss_pred HHHHHHHHHCCCCCEEEEEEEC--CCHHHHHHHHHHHHCCCCEEEECCCCCCCCC-E------EECCHHHHHHHHCCCCE
T ss_conf 9999999876997468999848--9878999998887659899998888998600-0------44234899997099998
Q ss_pred EEE
Q ss_conf 998
Q 003702 604 GIL 606 (801)
Q Consensus 604 ~il 606 (801)
.++
T Consensus 153 lvV 155 (156)
T 3fg9_A 153 IVV 155 (156)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 995
No 10
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=1.00 E-value=1 Score=96.62 Aligned_cols=136 Identities=14% Similarity=0.136 Sum_probs=95.8
Q ss_pred CEEEEEECCCCC--HHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 438898426899--368999999735999899837999994211687514677742002899766778888630589999
Q 003702 451 LRIFACFHTASN--VPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAF 528 (801)
Q Consensus 451 lriLv~i~~~~~--~~~~i~ll~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 528 (801)
-+||+|+++++. ...++..+..++ +..+..++++|+++.+............ . .... .+..++..+.+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la---~~~~a~l~ll~v~~~~~~~~~~~~~~~~--~-~~~~----~~~~~~~~~~l 71 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEA---RIDDAEVHFLTVIPSLPYYASLGMAYTA--E-LPGM----DELREGSETQL 71 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHH---HHHTCEEEEEEEECC-------------------CH----HHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHH---HHCCCEEEEEEEECCCCCCCCCCCCCCC--H-HHHH----HHHHHHHHHHH
T ss_conf 87999855880766999999999999---8449869999995588654433445651--2-4569----99999999999
Q ss_pred HHHHHC---CCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 997622---64489986984379973898999988339559995276566568842344221189999985008995499
Q 003702 529 EAFRQL---SRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGI 605 (801)
Q Consensus 529 ~~~~~~---~~v~v~~~~~vs~~~~~~~dI~~~A~~~~adlIilp~h~~~~~dg~~~~~~~~~~~vn~~Vl~~ApCsV~i 605 (801)
+++.++ .++.++..+..+ ++.+.|++.|++.++||||||.|+ .+..+. .+|++.++|++++||||.+
T Consensus 72 ~~~~~~~~~~~~~v~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~------~~Gs~~~~v~~~~~~pVlv 141 (143)
T 3fdx_A 72 KEIAKKFSIPEDRMHFHVAEG---SPKDKILALAKSLPADLVIIASHR-PDITTY------LLGSNAAAVVRHAECSVLV 141 (143)
T ss_dssp HHHHTTSCCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEEESSC-TTCCSC------SSCHHHHHHHHHCSSEEEE
T ss_pred HHHHHHCCCCCCCEEEEEEEC---CHHHHHHHHHHHHCCCEEEEECCC-CCCEEE------EECCHHHHHHHHCCCCEEE
T ss_conf 999987077777359999835---859999999998589999994799-997304------6461899999848997899
Q ss_pred E
Q ss_conf 8
Q 003702 606 L 606 (801)
Q Consensus 606 l 606 (801)
+
T Consensus 142 v 142 (143)
T 3fdx_A 142 V 142 (143)
T ss_dssp E
T ss_pred E
T ss_conf 5
Done!