Query 003703
Match_columns 801
No_of_seqs 556 out of 3190
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 18:53:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003703.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1750-1754//hhsearch_pdb/003703hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 412.2 19.9 255 455-725 41-319 (329)
2 3omv_A RAF proto-oncogene seri 1.0 1 1 408.9 21.4 256 455-725 36-300 (307)
3 4asz_A BDNF/NT-3 growth factor 1.0 1 1 408.1 17.5 255 455-725 13-289 (299)
4 4gt4_A Tyrosine-protein kinase 1.0 1 1 406.9 17.7 251 457-723 28-304 (308)
5 4b9d_A Serine/threonine-protei 1.0 1 1 401.8 12.6 248 455-720 24-279 (350)
6 4fie_A Serine/threonine-protei 1.0 1 1 397.4 21.0 244 455-717 151-400 (423)
7 4fih_A Serine/threonine-protei 1.0 1 1 397.2 18.8 244 455-717 74-323 (346)
8 4ase_A Vascular endothelial gr 1.0 1 1 394.8 16.9 264 445-724 54-346 (353)
9 3hmm_A TGF-beta receptor type- 1.0 1 1 389.0 18.1 259 456-726 4-298 (303)
10 4g3f_A NF-kappa-beta-inducing 1.0 1 1 388.8 20.2 251 454-723 57-314 (336)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=412.20 Aligned_cols=255 Identities=26% Similarity=0.432 Sum_probs=213.8
Q ss_pred CCCCCCCEEEECCCEEEEEEEEC-------CEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCE
Q ss_conf 49665512310275699999998-------92999999504882027999999999852899951148220158--7510
Q 003703 455 CNFSESFKVGQGGFGCVYKGEML-------GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSL 525 (801)
Q Consensus 455 ~~f~~~~~LG~G~fG~Vykg~~~-------g~~vAiK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~--~~~L 525 (801)
.+|...++||+|+||.||+|++. +..||||+++.........|.+|+.+|++++|||||+++|+|.+ ..+|
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEECCCCCCHHHHHHHCCC------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCE
Q ss_conf 4632799962466520299------------9989999999999999999999871599943617899997443689980
Q 003703 526 VYEYLPNGSLQDRLFRKSN------------VSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSS 593 (801)
Q Consensus 526 V~E~~~~gsL~~~L~~~~~------------~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDIKp~NILld~~~~v 593 (801)
|||||++|+|.++|..... ..+++|..++.|+.|+|.||.|||+.+ |+||||||+||||+.++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCCE
T ss_conf 9982799939999986075410012211245788999999999999999999984088---4226666764898899968
Q ss_pred EEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCCHHH--HHHHH
Q ss_conf 36115520111578876777555689999988889643336989962037869999999981-9999997267--99986
Q 003703 594 KICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLT-GRLPVGLAGE--VRRAV 670 (801)
Q Consensus 594 KL~DFGla~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~ksDVwSlGviL~ELlt-G~~P~~~~~~--~~~~~ 670 (801)
||+|||+|+.+...... .......||+.|||||++.+..|+.++|||||||+||||+| |+.||..... +...+
T Consensus 198 Ki~DFGla~~~~~~~~~----~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i 273 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYY----RVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCI 273 (329)
T ss_dssp EECCCC--------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHH
T ss_pred EECCCCCCEECCCCCCC----EECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 97666033365678753----00476455656658265447999966300105789999982899999998999999999
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3096323357888999989999999999996500779999965899999998310
Q 003703 671 SCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHV 725 (801)
Q Consensus 671 ~~~~~~~~~d~~~~~~~~~~~~~l~~Li~~Cl~~dP~~RPt~~~~l~~~L~~l~~ 725 (801)
..+.. ...|..++..+.+|+.+||+.||.+|||+. +|+..|+.+..
T Consensus 274 ~~g~~--------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~-ei~~~L~~l~~ 319 (329)
T 4aoj_A 274 TQGRE--------LERPRACPPEVYAIMRGCWQREPQQRHSIK-DVHARLQALAQ 319 (329)
T ss_dssp HHTCC--------CCCCTTCCHHHHHHHHHHCCSSTTTSCCHH-HHHHHHHHHHH
T ss_pred HCCCC--------CCCCCCCCHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHH
T ss_conf 80898--------998644639999999997475965792999-99999998745
No 2
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=408.86 Aligned_cols=256 Identities=28% Similarity=0.454 Sum_probs=208.9
Q ss_pred CCCCCCCEEEECCCEEEEEEEECCEEEEEEEECCCCC--CCHHHHHHHHHHHHCCCCCCEEEEECCCCC-CCCEEEECCC
Q ss_conf 4966551231027569999999892999999504882--027999999999852899951148220158-7510463279
Q 003703 455 CNFSESFKVGQGGFGCVYKGEMLGRTVAIKMLYSHNM--QGQLEFQQEVRVLSKLQHPHLVTLLGACPE-AWSLVYEYLP 531 (801)
Q Consensus 455 ~~f~~~~~LG~G~fG~Vykg~~~g~~vAiK~l~~~~~--~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~LV~E~~~ 531 (801)
++|...++||+|+||.||+|++.+ .||||+++.... .....|.+|+.++++++|||||+++|+|.+ ..+||||||+
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmEy~~ 114 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCE 114 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESSS-EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCS
T ss_pred HHEEEEEEEEECCCCEEEEEEECC-CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEECCC
T ss_conf 994984498208886899999899-6899999726899999999999999998589988746999997895899997489
Q ss_pred CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCEEECCCCCCCC
Q ss_conf 99624665202999989999999999999999999871599943617899997443689980361155201115788767
Q 003703 532 NGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYL 611 (801)
Q Consensus 532 ~gsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDIKp~NILld~~~~vKL~DFGla~~~~~~~~~~ 611 (801)
+|+|.++|.... ..++|..++.|+.|+|.||.|||+.+ ||||||||+||||+.++.+||+|||+|+........
T Consensus 115 gGsL~~~l~~~~--~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~- 188 (307)
T 3omv_A 115 GSSLYKHLHVQE--TKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS- 188 (307)
T ss_dssp SCBHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC--------
T ss_pred CCCHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCC-
T ss_conf 987889875248--99999999999999999999997799---527855789978889990899441575424667764-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHCCCCCCCCCCCCCC
Q ss_conf 77555689999988889643336---9899620378699999999819999997267---99986309632335788899
Q 003703 612 PSFHRSTAPKGSFPYADPEYHRT---GVLTPKSDSYSFGLIILQLLTGRLPVGLAGE---VRRAVSCGKLSSILDPLAGD 685 (801)
Q Consensus 612 ~~~~~~~~~~Gt~~Y~aPE~~~~---~~~s~ksDVwSlGviL~ELltG~~P~~~~~~---~~~~~~~~~~~~~~d~~~~~ 685 (801)
.......||+.|||||++.+ +.|+.++|||||||+||||+||+.||..... +...+..+. ..|....
T Consensus 189 ---~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~----~~p~~~~ 261 (307)
T 3omv_A 189 ---QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGY----ASPDLSK 261 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTC----CCCCSTT
T ss_pred ---EEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC----CCCCCCC
T ss_conf ---031564468772498786146899878687757289999999978899899996999999996588----8887200
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9989999999999996500779999965899999998310
Q 003703 686 WPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHV 725 (801)
Q Consensus 686 ~~~~~~~~l~~Li~~Cl~~dP~~RPt~~~~l~~~L~~l~~ 725 (801)
.+..++..+.+|+.+||+.||.+|||+. .++..|+.+..
T Consensus 262 ~~~~~~~~l~~li~~cl~~dP~~RPs~~-ei~~~Le~l~~ 300 (307)
T 3omv_A 262 LYKNCPKAMKRLVADCVKKVKEERPLFP-QILSSIELLQH 300 (307)
T ss_dssp SCTTSCHHHHHHHHHHTCSSSTTSCCHH-HHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHC
T ss_conf 3544569999999997577976890989-99999999745
No 3
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=408.12 Aligned_cols=255 Identities=28% Similarity=0.449 Sum_probs=213.5
Q ss_pred CCCCCCCEEEECCCEEEEEEEEC-------CEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCE
Q ss_conf 49665512310275699999998-------92999999504882027999999999852899951148220158--7510
Q 003703 455 CNFSESFKVGQGGFGCVYKGEML-------GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSL 525 (801)
Q Consensus 455 ~~f~~~~~LG~G~fG~Vykg~~~-------g~~vAiK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~--~~~L 525 (801)
++|...+.||+|+||.||+|++. +..||||+++.........|.+|+.+|++++|||||+++|+|.+ ..+|
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEECCCCCCHHHHHHHCC----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEE
Q ss_conf 463279996246652029----------9998999999999999999999987159994361789999744368998036
Q 003703 526 VYEYLPNGSLQDRLFRKS----------NVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKI 595 (801)
Q Consensus 526 V~E~~~~gsL~~~L~~~~----------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDIKp~NILld~~~~vKL 595 (801)
|||||++|+|.++|.... ....++|..++.|+.|++.||.|||+.+ |+||||||+||||+.++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEE
T ss_conf 99858999689999860864211123577788999999999999999999997599---046765776389879986898
Q ss_pred ECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCCHH--HHHHHHHC
Q ss_conf 115520111578876777555689999988889643336989962037869999999981-999999726--79998630
Q 003703 596 CDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLT-GRLPVGLAG--EVRRAVSC 672 (801)
Q Consensus 596 ~DFGla~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~ksDVwSlGviL~ELlt-G~~P~~~~~--~~~~~~~~ 672 (801)
+|||+|+........ .......||+.|||||++.+..|+.++|||||||+||||+| |+.||.... .+...+..
T Consensus 170 ~DFGla~~~~~~~~~----~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~ 245 (299)
T 4asz_A 170 GDFGMSRDVYSTDYY----RVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQ 245 (299)
T ss_dssp CCCSCHHHHTGGGCE----EETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHH
T ss_pred CCCCCCEECCCCCCE----EECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC
T ss_conf 873001006788741----6647513470103889870799970366778899999998089999999899999999980
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 96323357888999989999999999996500779999965899999998310
Q 003703 673 GKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHV 725 (801)
Q Consensus 673 ~~~~~~~d~~~~~~~~~~~~~l~~Li~~Cl~~dP~~RPt~~~~l~~~L~~l~~ 725 (801)
+... ..|..++..+.+|+.+||+.||.+||++. .+...|+.+..
T Consensus 246 ~~~~--------~~p~~~~~~~~~li~~cl~~dP~~RPs~~-~i~~~L~~~~~ 289 (299)
T 4asz_A 246 GRVL--------QRPRTCPQEVYELMLGCWQREPHMRKNIK-GIHTLLQNLAK 289 (299)
T ss_dssp TCCC--------CCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHHHHH
T ss_pred CCCC--------CCCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHH
T ss_conf 8988--------99741439999999997687966892999-99999987776
No 4
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=406.93 Aligned_cols=251 Identities=27% Similarity=0.435 Sum_probs=207.2
Q ss_pred CCCCCEEEECCCEEEEEEEEC-------CEEEEEEEECCCCC-CCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCEE
Q ss_conf 665512310275699999998-------92999999504882-027999999999852899951148220158--75104
Q 003703 457 FSESFKVGQGGFGCVYKGEML-------GRTVAIKMLYSHNM-QGQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSLV 526 (801)
Q Consensus 457 f~~~~~LG~G~fG~Vykg~~~-------g~~vAiK~l~~~~~-~~~~~~~~E~~il~~l~HpnIv~l~g~~~~--~~~LV 526 (801)
+...++||+|+||.||+|.+. +..||||+++.... .....|.+|+.++++++|||||+++|+|.+ ..+||
T Consensus 28 ~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV 107 (308)
T 4gt4_A 28 VRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMI 107 (308)
T ss_dssp EEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred CEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEE
T ss_conf 85866913588848999998577658888699999988014968999999999999858998987736499889988999
Q ss_pred EECCCCCCHHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCE
Q ss_conf 632799962466520299-------------9989999999999999999999871599943617899997443689980
Q 003703 527 YEYLPNGSLQDRLFRKSN-------------VSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSS 593 (801)
Q Consensus 527 ~E~~~~gsL~~~L~~~~~-------------~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDIKp~NILld~~~~v 593 (801)
||||++|+|.++|..... ...++|..++.|+.|||.||.|||+.+ ||||||||+||||+.++.+
T Consensus 108 ~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~~~ 184 (308)
T 4gt4_A 108 FSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLNV 184 (308)
T ss_dssp EECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCE
T ss_pred EECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCCCE
T ss_conf 9818999499999862765433332211112468999999999999999999998689---9778736230688799978
Q ss_pred EEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCCHHH--HHHHH
Q ss_conf 36115520111578876777555689999988889643336989962037869999999981-9999997267--99986
Q 003703 594 KICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLT-GRLPVGLAGE--VRRAV 670 (801)
Q Consensus 594 KL~DFGla~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~ksDVwSlGviL~ELlt-G~~P~~~~~~--~~~~~ 670 (801)
||+|||+|+.+...... .......||+.|||||++.++.|+.++|||||||+||||+| |++||..... +...+
T Consensus 185 Ki~DFGlar~~~~~~~~----~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i 260 (308)
T 4gt4_A 185 KISDLGLFREVYAADYY----KLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMI 260 (308)
T ss_dssp EECCSCCBCGGGGGGCB----CSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHH
T ss_pred EECCCCCCEECCCCCCE----EEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 98876020233677740----47345125776569899827999963000157999999996899999998999999999
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 30963233578889999899999999999965007799999658999999983
Q 003703 671 SCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQL 723 (801)
Q Consensus 671 ~~~~~~~~~d~~~~~~~~~~~~~l~~Li~~Cl~~dP~~RPt~~~~l~~~L~~l 723 (801)
..+... ..|..++..+.+|+.+||+.||.+||++. +|+..|+.+
T Consensus 261 ~~~~~~--------~~p~~~~~~~~~li~~C~~~dP~~RPs~~-ei~~~L~a~ 304 (308)
T 4gt4_A 261 RNRQVL--------PCPDDCPAWVYALMIECWNEFPSRRPRFK-DIHSRLRAW 304 (308)
T ss_dssp HTTCCC--------CCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHTS
T ss_pred HCCCCC--------CCCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHC
T ss_conf 819989--------99620369999999997587965792999-999999853
No 5
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=401.78 Aligned_cols=248 Identities=25% Similarity=0.339 Sum_probs=206.6
Q ss_pred CCCCCCCEEEECCCEEEEEEEEC--CEEEEEEEECCCCCC--CHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCEEEE
Q ss_conf 49665512310275699999998--929999995048820--27999999999852899951148220158--7510463
Q 003703 455 CNFSESFKVGQGGFGCVYKGEML--GRTVAIKMLYSHNMQ--GQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSLVYE 528 (801)
Q Consensus 455 ~~f~~~~~LG~G~fG~Vykg~~~--g~~vAiK~l~~~~~~--~~~~~~~E~~il~~l~HpnIv~l~g~~~~--~~~LV~E 528 (801)
++|...+.||+|+||.||+|++. |..||||++...... ....|.+|+.+|++++|||||++++++.+ ..+||||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCEEECCCCC
Q ss_conf 27999624665202999989999999999999999999871599943617899997443689980361155201115788
Q 003703 529 YLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDT 608 (801)
Q Consensus 529 ~~~~gsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDIKp~NILld~~~~vKL~DFGla~~~~~~~ 608 (801)
||+||+|.++|..... ..+++..++.|+.||+.||.|||+.+ |+||||||+||||+.++.+||+|||+|+.+....
T Consensus 104 y~~gg~L~~~i~~~~~-~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKG-VLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp CCTTCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred CCCCCCHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECCCC
T ss_conf 8899839999997389-99978999999999999999999899---1513597899798789998976465214406885
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHH--HHHHHHCCCCCCCCCCCCCCC
Q ss_conf 767775556899999888896433369899620378699999999819999997267--999863096323357888999
Q 003703 609 LYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGE--VRRAVSCGKLSSILDPLAGDW 686 (801)
Q Consensus 609 ~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~ksDVwSlGviL~ELltG~~P~~~~~~--~~~~~~~~~~~~~~d~~~~~~ 686 (801)
. .....+||+.|||||++.+..|+.++|||||||+||||+||++||..... +...+..+.+. ..
T Consensus 180 ~------~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~--------~~ 245 (350)
T 4b9d_A 180 E------LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFP--------PV 245 (350)
T ss_dssp H------HHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCC--------CC
T ss_pred C------CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC--------CC
T ss_conf 4------101457883603999987999895999999999999999787998996999999999808999--------99
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 9899999999999965007799999658999999
Q 003703 687 PTFVARRLVDLGLQCCELYGRERPDITPSLVKEL 720 (801)
Q Consensus 687 ~~~~~~~l~~Li~~Cl~~dP~~RPt~~~~l~~~L 720 (801)
+..++..+.+|+.+||+.||.+||++.+.+.+.+
T Consensus 246 ~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~ 279 (350)
T 4b9d_A 246 SLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGF 279 (350)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHH
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHH
T ss_conf 7557999999999985589667908999963997
No 6
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=397.35 Aligned_cols=244 Identities=21% Similarity=0.320 Sum_probs=205.1
Q ss_pred CCCCCCCEEEECCCEEEEEEEEC--CEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC--CCCCEEEECC
Q ss_conf 49665512310275699999998--9299999950488202799999999985289995114822015--8751046327
Q 003703 455 CNFSESFKVGQGGFGCVYKGEML--GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACP--EAWSLVYEYL 530 (801)
Q Consensus 455 ~~f~~~~~LG~G~fG~Vykg~~~--g~~vAiK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~--~~~~LV~E~~ 530 (801)
..|....+||+|+||.||+|++. |..||||++..........+.+|+.+|..++|||||++++++. +..+||||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 84386169624818489999999999899999986255468999999999998579989871689999899999999698
Q ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCEEECCCCCCC
Q ss_conf 99962466520299998999999999999999999987159994361789999744368998036115520111578876
Q 003703 531 PNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLY 610 (801)
Q Consensus 531 ~~gsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDIKp~NILld~~~~vKL~DFGla~~~~~~~~~ 610 (801)
+||+|.+++... .+++..+..|+.||+.||.|||+.+ ||||||||+||||+.++.+||+|||+|+.+.....
T Consensus 231 ~gG~L~~~i~~~----~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~- 302 (423)
T 4fie_A 231 EGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 302 (423)
T ss_dssp TTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC-
T ss_pred CCCCHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 998289887616----9899999999999999999999889---04465787778985899989803726547778876-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH--HHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 77755568999998888964333698996203786999999998199999972679--9986309632335788899998
Q 003703 611 LPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEV--RRAVSCGKLSSILDPLAGDWPT 688 (801)
Q Consensus 611 ~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~ksDVwSlGviL~ELltG~~P~~~~~~~--~~~~~~~~~~~~~d~~~~~~~~ 688 (801)
.....+||+.|||||++.+..|+.++|||||||++|||++|++||...... ...+..+. .+.... +.
T Consensus 303 -----~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~-----~~~~~~-~~ 371 (423)
T 4fie_A 303 -----RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNL-----PPRLKN-LH 371 (423)
T ss_dssp -----CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSC-----CCCCSC-TT
T ss_pred -----CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC-----CCCCCC-CC
T ss_conf -----4346664747279999779999968999999999999997879989869999999997279-----988765-01
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 99999999999965007799999658999
Q 003703 689 FVARRLVDLGLQCCELYGRERPDITPSLV 717 (801)
Q Consensus 689 ~~~~~l~~Li~~Cl~~dP~~RPt~~~~l~ 717 (801)
.++..+.+|+.+||..||.+||++.+.+.
T Consensus 372 ~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 372 KVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp SSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 29999999999986789568909999960
No 7
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=397.18 Aligned_cols=244 Identities=21% Similarity=0.314 Sum_probs=204.8
Q ss_pred CCCCCCCEEEECCCEEEEEEEEC--CEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC--CCCCEEEECC
Q ss_conf 49665512310275699999998--9299999950488202799999999985289995114822015--8751046327
Q 003703 455 CNFSESFKVGQGGFGCVYKGEML--GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACP--EAWSLVYEYL 530 (801)
Q Consensus 455 ~~f~~~~~LG~G~fG~Vykg~~~--g~~vAiK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~--~~~~LV~E~~ 530 (801)
..|....+||+|+||.||+|++. |..||||++..........+.+|+.+|.+++|||||++++++. +..+||||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCEEECCCCCCC
Q ss_conf 99962466520299998999999999999999999987159994361789999744368998036115520111578876
Q 003703 531 PNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLY 610 (801)
Q Consensus 531 ~~gsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDIKp~NILld~~~~vKL~DFGla~~~~~~~~~ 610 (801)
++|+|.+++... .+++..+..|+.|++.||.|||+.+ |+||||||+||||+.++++||+|||+|+.+.....
T Consensus 154 ~gg~L~~~l~~~----~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~- 225 (346)
T 4fih_A 154 EGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 225 (346)
T ss_dssp TTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC-
T ss_pred CCCCHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 998089998718----9899999999999999999999888---35562788997887999889902757536678877-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH--HHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 77755568999998888964333698996203786999999998199999972679--9986309632335788899998
Q 003703 611 LPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEV--RRAVSCGKLSSILDPLAGDWPT 688 (801)
Q Consensus 611 ~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~ksDVwSlGviL~ELltG~~P~~~~~~~--~~~~~~~~~~~~~d~~~~~~~~ 688 (801)
.....+||+.|||||++.+..|+.++|||||||++|||++|++||...... ...+..+. .+.. ..+.
T Consensus 226 -----~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~-----~~~~-~~~~ 294 (346)
T 4fih_A 226 -----RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNL-----PPRL-KNLH 294 (346)
T ss_dssp -----CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSS-----CCCC-SCGG
T ss_pred -----CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC-----CCCC-CCCC
T ss_conf -----5346562758279999779999968999999999999997879989859999999997179-----9988-7502
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 99999999999965007799999658999
Q 003703 689 FVARRLVDLGLQCCELYGRERPDITPSLV 717 (801)
Q Consensus 689 ~~~~~l~~Li~~Cl~~dP~~RPt~~~~l~ 717 (801)
.++..+.+|+.+||..||.+|||+.+.+.
T Consensus 295 ~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 295 KVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp GSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 29999999999986799568909999960
No 8
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=394.78 Aligned_cols=264 Identities=28% Similarity=0.450 Sum_probs=214.4
Q ss_pred CCHHHHHHHHCCCCCCCEEEECCCEEEEEEEECC-------EEEEEEEECCCCCC-CHHHHHHHHHHHHCCCC-CCEEEE
Q ss_conf 4978899871496655123102756999999989-------29999995048820-27999999999852899-951148
Q 003703 445 FSLADLQTATCNFSESFKVGQGGFGCVYKGEMLG-------RTVAIKMLYSHNMQ-GQLEFQQEVRVLSKLQH-PHLVTL 515 (801)
Q Consensus 445 ~~~~el~~at~~f~~~~~LG~G~fG~Vykg~~~g-------~~vAiK~l~~~~~~-~~~~~~~E~~il~~l~H-pnIv~l 515 (801)
+...+.+...++|...+.||+|+||.||+|.+.+ +.||||++...... ....|.+|+.+|.+++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred ECCCCC---CCCEEEECCCCCCHHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
Q ss_conf 220158---75104632799962466520299-------------99899999999999999999998715999436178
Q 003703 516 LGACPE---AWSLVYEYLPNGSLQDRLFRKSN-------------VSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGD 579 (801)
Q Consensus 516 ~g~~~~---~~~LV~E~~~~gsL~~~L~~~~~-------------~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrD 579 (801)
+|+|.+ ..++|||||++|+|.++|..... ...++|..++.|+.|||.||.|||+.+ |||||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSC
T ss_pred EEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCC
T ss_conf 899994697799999838989799999743566654333410110356899999999999999987676278---43574
Q ss_pred CCCCCEEECCCCCEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCC
Q ss_conf 9999744368998036115520111578876777555689999988889643336989962037869999999981-999
Q 003703 580 LKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLT-GRL 658 (801)
Q Consensus 580 IKp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~ksDVwSlGviL~ELlt-G~~ 658 (801)
|||+|||++.++.+||+|||+|+.+..+... .......||+.|||||++.+..|+.++|||||||+||||+| |++
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~----~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~ 286 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDY----VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGAS 286 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTS----EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCEEECCCCCEEECCCHHHHHCCCCCCC----EEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCC
T ss_conf 6721130579997897965432224568872----032540146665698999469999755374068999999818999
Q ss_pred CCCCHH---HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 999726---799986309632335788899998999999999999650077999996589999999831
Q 003703 659 PVGLAG---EVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLH 724 (801)
Q Consensus 659 P~~~~~---~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~Li~~Cl~~dP~~RPt~~~~l~~~L~~l~ 724 (801)
||.... .+...+..+... ..|...+..+.+|+.+||+.||.+|||+. .++..|+.+.
T Consensus 287 Pf~~~~~~~~~~~~i~~g~~~--------~~p~~~~~~~~~li~~c~~~dP~~RPt~~-eil~~L~~ll 346 (353)
T 4ase_A 287 PYPGVKIDEEFCRRLKEGTRM--------RAPDYTTPEMYQTMLDCWHGEPSQRPTFS-ELVEHLGNLL 346 (353)
T ss_dssp SSTTCCCSHHHHHHHHHTCCC--------CCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCC--------CCCCCCCHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHH
T ss_conf 999989899999999738988--------88865789999999997686966793999-9999999999
No 9
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=389.00 Aligned_cols=259 Identities=25% Similarity=0.315 Sum_probs=199.7
Q ss_pred CCCCCCEEEECCCEEEEEEEECCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC------CCCEEEEC
Q ss_conf 966551231027569999999892999999504882027999999999852899951148220158------75104632
Q 003703 456 NFSESFKVGQGGFGCVYKGEMLGRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACPE------AWSLVYEY 529 (801)
Q Consensus 456 ~f~~~~~LG~G~fG~Vykg~~~g~~vAiK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~------~~~LV~E~ 529 (801)
++...++||+|+||.||+|+++|..||||++..... ....+..|+..+.+++|||||+++|+|.+ ..+|||||
T Consensus 4 ~i~L~~~iG~G~fG~Vy~~~~~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey 82 (303)
T 3hmm_A 4 TIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDY 82 (303)
T ss_dssp GEEEEEEEEECSSSEEEEEEETTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEEC
T ss_pred EEEEEEEEEECCCEEEEEEEECCEEEEEEEECCCCH-HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEECC
T ss_conf 899978984089939999999998999999883133-6699999999986089998870999998468872378877517
Q ss_pred CCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----CCCEEECCCCCCCEEECCCCCEEEECCCCEEEC
Q ss_conf 799962466520299998999999999999999999987159-----994361789999744368998036115520111
Q 003703 530 LPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSK-----PEKIVHGDLKPQNILLDSELSSKICDFGICRLV 604 (801)
Q Consensus 530 ~~~gsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~-----~~~iiHrDIKp~NILld~~~~vKL~DFGla~~~ 604 (801)
|++|+|.++|... .++|..+++|+.|++.||.|||+.. .++|+||||||+|||||.++++||+|||+|+..
T Consensus 83 ~~~gsL~~~l~~~----~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~ 158 (303)
T 3hmm_A 83 HEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH 158 (303)
T ss_dssp CTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred CCCCCHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCC
T ss_conf 8999689999757----999899999999999999999985240047898762467842089988997899847987455
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCHHHHHHHHHHHHHHHCCCCCCCHH--------------
Q ss_conf 5788767775556899999888896433369------89962037869999999981999999726--------------
Q 003703 605 TEDTLYLPSFHRSTAPKGSFPYADPEYHRTG------VLTPKSDSYSFGLIILQLLTGRLPVGLAG-------------- 664 (801)
Q Consensus 605 ~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~------~~s~ksDVwSlGviL~ELltG~~P~~~~~-------------- 664 (801)
....... .......+||+.|||||++.+. .++.++|||||||+||||+||++||....
T Consensus 159 ~~~~~~~--~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~ 236 (303)
T 3hmm_A 159 DSATDTI--DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDP 236 (303)
T ss_dssp ETTTTEE--SCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSC
T ss_pred CCCCCCE--EEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCC
T ss_conf 6777732--21046424664626988845654556776570676664799999998789987766522353100254543
Q ss_pred ---HHHHHHHCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf ---799986309632335788899--99899999999999965007799999658999999983101
Q 003703 665 ---EVRRAVSCGKLSSILDPLAGD--WPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVA 726 (801)
Q Consensus 665 ---~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~l~~Li~~Cl~~dP~~RPt~~~~l~~~L~~l~~~ 726 (801)
.+...+..+ .++|.... .+......+.+|+.+||+.||.+|||+. .+++.|+.+...
T Consensus 237 ~~~~~~~~~~~~----~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~-ei~~~L~~l~~~ 298 (303)
T 3hmm_A 237 SVEEMRKVVCEQ----KLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTAL-RIKKTLSQLSQQ 298 (303)
T ss_dssp CHHHHHHHHTTS----CCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHH-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHHH
T ss_conf 099999987502----57998876556658999999999997605975795999-999999988987
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=388.83 Aligned_cols=251 Identities=23% Similarity=0.246 Sum_probs=202.7
Q ss_pred HCCCCCCCEEEECCCEEEEEEEEC--CEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCEEEEC
Q ss_conf 149665512310275699999998--92999999504882027999999999852899951148220158--75104632
Q 003703 454 TCNFSESFKVGQGGFGCVYKGEML--GRTVAIKMLYSHNMQGQLEFQQEVRVLSKLQHPHLVTLLGACPE--AWSLVYEY 529 (801)
Q Consensus 454 t~~f~~~~~LG~G~fG~Vykg~~~--g~~vAiK~l~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~--~~~LV~E~ 529 (801)
.+.|....+||+|+||.||+|++. |..||||+++.... +.+|+.++.+++|||||++++++.+ ..+|||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 3351768685138780999999889998999999788886-----99999999857998999399999989999999966
Q ss_pred CCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC-CEEEECCCCEEECCCCC
Q ss_conf 79996246652029999899999999999999999998715999436178999974436899-80361155201115788
Q 003703 530 LPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSEL-SSKICDFGICRLVTEDT 608 (801)
Q Consensus 530 ~~~gsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDIKp~NILld~~~-~vKL~DFGla~~~~~~~ 608 (801)
|+||+|.++|.... .+++..+..|+.|++.||.|||+.+ ||||||||+||||+.++ .+||+|||+|+.+....
T Consensus 132 ~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~ 205 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG---CLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205 (336)
T ss_dssp CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred CCCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHCC---CEECCCCHHHEEEECCCCEEEEEECCCCEECCCCC
T ss_conf 59986999998769---9999999999999999999999889---04261677887995899979996278776856787
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHH--HHHHHHCCCCCCCCCCCCCCC
Q ss_conf 767775556899999888896433369899620378699999999819999997267--999863096323357888999
Q 003703 609 LYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGE--VRRAVSCGKLSSILDPLAGDW 686 (801)
Q Consensus 609 ~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~ksDVwSlGviL~ELltG~~P~~~~~~--~~~~~~~~~~~~~~d~~~~~~ 686 (801)
... ........+||+.|||||++.+..|+.++|||||||+||||+||++||..... +...+..+.. .....
T Consensus 206 ~~~-~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~------~~~~~ 278 (336)
T 4g3f_A 206 LGK-SLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPP------PIREI 278 (336)
T ss_dssp ---------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCC------GGGGS
T ss_pred CCC-CEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC------CCHHC
T ss_conf 654-02217854558020089998899989089999999999999978699899899999999980899------80025
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 9899999999999965007799999658999999983
Q 003703 687 PTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQL 723 (801)
Q Consensus 687 ~~~~~~~l~~Li~~Cl~~dP~~RPt~~~~l~~~L~~l 723 (801)
+..++..+.+|+.+||+.||.+|||+.+ +.+.|...
T Consensus 279 ~~~~s~~~~~li~~~L~~dP~~R~sa~e-l~~~l~~~ 314 (336)
T 4g3f_A 279 PPSCAPLTAQAIQEGLRKEPVHRASAME-LRRKVGKA 314 (336)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHHH-HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHHH-HHHHHHHH
T ss_conf 8667999999999976289768959999-99999999
Done!