Query 003704
Match_columns 801
No_of_seqs 565 out of 5314
Neff 8.7
Searched_HMMs 29240
Date Tue Mar 26 17:42:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003704.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1755-1759//hhsearch_pdb/003704hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 407.5 23.4 261 509-791 41-320 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 405.9 19.0 261 509-791 13-290 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 403.6 20.2 258 510-788 27-304 (308)
4 4b9d_A Serine/threonine-protei 1.0 1 1 403.1 18.3 253 509-785 24-278 (350)
5 3omv_A RAF proto-oncogene seri 1.0 1 1 402.5 24.2 262 508-790 35-300 (307)
6 4ase_A Vascular endothelial gr 1.0 1 1 397.7 20.1 271 502-792 57-349 (353)
7 4fie_A Serine/threonine-protei 1.0 1 1 396.1 22.7 251 508-785 150-402 (423)
8 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 395.0 16.9 252 509-785 32-286 (311)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 392.2 22.5 258 509-795 58-321 (336)
10 4fih_A Serine/threonine-protei 1.0 1 1 392.0 20.5 251 508-785 73-325 (346)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=407.47 Aligned_cols=261 Identities=26% Similarity=0.441 Sum_probs=218.3
Q ss_pred CCCCCCCEEEECCCCEEEEEEEC------CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEE
Q ss_conf 68866781530396089999939------995999999345457635599999999986504999723212078725948
Q 003704 509 NSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR 582 (801)
Q Consensus 509 ~~~~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~ 582 (801)
++|.+.+.||+|+||.||+|++. ++..||||++.. ......+.|.+|++++++++|||||+++|+|.+.+..
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~--~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~ 118 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKE--ASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPL 118 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESC--CSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECC--CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEE
T ss_conf 99288779714778489989987866577896999999775--7979999999999999858998999698999989989
Q ss_pred EEEEECCCCCCHHHHHHCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC
Q ss_conf 999951479998899801832-----------137899999999999999999999856999938358899958977999
Q 003704 583 LLIYEYCSNGTLQDMLHSDDE-----------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL 651 (801)
Q Consensus 583 ~lV~E~~~~gsL~~~l~~~~~-----------~~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~ivHrDLkp~NILl~~~~ 651 (801)
++|||||++|+|.++++.... ....++|..++.|+.|++.||.|||+. +||||||||+|||++.++
T Consensus 119 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~ 195 (329)
T 4aoj_A 119 LMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGL 195 (329)
T ss_dssp EEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTT
T ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CEECCCCCHHHEEECCCC
T ss_conf 99998279993999998607541001221124578899999999999999999998408---842266667648988999
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCEEEC
Q ss_conf 49996146887867898432246643346767954-356898972047889999999990-9988564465554100001
Q 003704 652 AVSVSDCGLAPLISSGSVSQLSGHLLTAYGYGAPE-FESGIYTCQSDVYSFGVVMLELLT-GRKSYDRTRNRGEQFLVRW 729 (801)
Q Consensus 652 ~~ki~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE-~~~~~~~~k~DvwslGvil~ellt-G~~Pf~~~~~~~~~~~~~~ 729 (801)
.+||+|||+++.+.............||..|+||| +....|+.++|||||||++|||+| |+.||......
T Consensus 196 ~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~-------- 267 (329)
T 4aoj_A 196 VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNT-------- 267 (329)
T ss_dssp EEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHH--------
T ss_pred CEEECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHH--------
T ss_conf 689766603336567875300476455656658265447999966300105789999982899999998999--------
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 14544315566320399878999810189999999981001999999989999999999876
Q 003704 730 AIPQLHDIDALSRMVDPSLSGQYPAKSLSHFADIISRCVQSEPEFRPPMSEVVQDLVDMIRR 791 (801)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~~~~~ 791 (801)
+.+..+ ........|..++.++.+|+.+||+.||++|||+.||+++|+.+.+.
T Consensus 268 --------~~~~~i-~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 268 --------EAIDCI-TQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp --------HHHHHH-HHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred --------HHHHHH-HCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf --------999999-80898998644639999999997475965792999999999987458
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=405.93 Aligned_cols=261 Identities=24% Similarity=0.444 Sum_probs=218.1
Q ss_pred CCCCCCCEEEECCCCEEEEEEEC------CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEE
Q ss_conf 68866781530396089999939------995999999345457635599999999986504999723212078725948
Q 003704 509 NSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR 582 (801)
Q Consensus 509 ~~~~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~ 582 (801)
++|.+.+.||+|+||.||+|++. ++..||||++... .....+.|.+|++++++++|||||+++|+|.+.+..
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~--~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~ 90 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA--SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPL 90 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCC--CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEE
T ss_conf 892982498207882999999877666778879999996777--858999999999999858998886287999569989
Q ss_pred EEEEECCCCCCHHHHHHCCC---------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCE
Q ss_conf 99995147999889980183---------213789999999999999999999985699993835889995897799949
Q 003704 583 LLIYEYCSNGTLQDMLHSDD---------ELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAV 653 (801)
Q Consensus 583 ~lV~E~~~~gsL~~~l~~~~---------~~~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~ivHrDLkp~NILl~~~~~~ 653 (801)
++|||||++|+|.++++..+ .....++|..++.|+.|++.||.|||+. +|+||||||+|||++.++.+
T Consensus 91 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~ 167 (299)
T 4asz_A 91 IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLV 167 (299)
T ss_dssp EEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCE
T ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCE
T ss_conf 999985899968999986086421112357778899999999999999999999759---90467657763898799868
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCEEECCC
Q ss_conf 996146887867898432246643346767954-356898972047889999999990-998856446555410000114
Q 003704 654 SVSDCGLAPLISSGSVSQLSGHLLTAYGYGAPE-FESGIYTCQSDVYSFGVVMLELLT-GRKSYDRTRNRGEQFLVRWAI 731 (801)
Q Consensus 654 ki~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE-~~~~~~~~k~DvwslGvil~ellt-G~~Pf~~~~~~~~~~~~~~~~ 731 (801)
||+|||+|+...............||..|+||| +..+.|+.++|||||||++|||+| |+.||......
T Consensus 168 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~---------- 237 (299)
T 4asz_A 168 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN---------- 237 (299)
T ss_dssp EECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH----------
T ss_pred EECCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH----------
T ss_conf 9887300100678874166475134701038898707999703667788999999980899999998999----------
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 544315566320399878999810189999999981001999999989999999999876
Q 003704 732 PQLHDIDALSRMVDPSLSGQYPAKSLSHFADIISRCVQSEPEFRPPMSEVVQDLVDMIRR 791 (801)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~~~~~ 791 (801)
+.+..+. .......|..++.++.+|+.+||+.||++|||+.|+++.|+++.+.
T Consensus 238 ------~~~~~i~-~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 238 ------EVIECIT-QGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp ------HHHHHHH-HTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHH-CCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf ------9999998-0898899741439999999997687966892999999999877763
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=403.57 Aligned_cols=258 Identities=26% Similarity=0.435 Sum_probs=214.7
Q ss_pred CCCCCCEEEECCCCEEEEEEE------CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEE
Q ss_conf 886678153039608999993------99959999993454576355999999999865049997232120787259489
Q 003704 510 SFSQENLIGAGMLGSVYRAQL------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL 583 (801)
Q Consensus 510 ~~~~~~~iG~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~ 583 (801)
.+++.+.||+|+||.||+|++ .+++.||||++.... .....+.|.+|+.++++++|||||+++|+|.+.+..+
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~-~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKA-EGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-C-CC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEE
T ss_conf 885866913588848999998577658888699999988014-9689999999999998589989877364998899889
Q ss_pred EEEECCCCCCHHHHHHCCC------------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC
Q ss_conf 9995147999889980183------------2137899999999999999999999856999938358899958977999
Q 003704 584 LIYEYCSNGTLQDMLHSDD------------ELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL 651 (801)
Q Consensus 584 lV~E~~~~gsL~~~l~~~~------------~~~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~ivHrDLkp~NILl~~~~ 651 (801)
+|||||++|+|.++|+... .....++|..++.|+.||+.||+|||+. +||||||||+|||++.++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGG
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCEEECCCC
T ss_conf 99981899949999986276543333221111246899999999999999999999868---997787362306887999
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCEEEC
Q ss_conf 49996146887867898432246643346767954-356898972047889999999990-9988564465554100001
Q 003704 652 AVSVSDCGLAPLISSGSVSQLSGHLLTAYGYGAPE-FESGIYTCQSDVYSFGVVMLELLT-GRKSYDRTRNRGEQFLVRW 729 (801)
Q Consensus 652 ~~ki~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE-~~~~~~~~k~DvwslGvil~ellt-G~~Pf~~~~~~~~~~~~~~ 729 (801)
.+||+|||+++...............||..|+||| +..+.|+.++|||||||++|||+| |+.||......
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~-------- 254 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ-------- 254 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH--------
T ss_pred CEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH--------
T ss_conf 789887602023367774047345125776569899827999963000157999999996899999998999--------
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 14544315566320399878999810189999999981001999999989999999999
Q 003704 730 AIPQLHDIDALSRMVDPSLSGQYPAKSLSHFADIISRCVQSEPEFRPPMSEVVQDLVDM 788 (801)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~~ 788 (801)
+.+ ..+........|..++.++.+|+.+||+.||++||||.||+++|+..
T Consensus 255 --------~~~-~~i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 255 --------DVV-EMIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp --------HHH-HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred --------HHH-HHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHC
T ss_conf --------999-99981998999620369999999997587965792999999999853
No 4
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=403.12 Aligned_cols=253 Identities=22% Similarity=0.397 Sum_probs=212.9
Q ss_pred CCCCCCCEEEECCCCEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEEEE
Q ss_conf 6886678153039608999993-999599999934545763559999999998650499972321207872594899995
Q 003704 509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE 587 (801)
Q Consensus 509 ~~~~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~E 587 (801)
++|++.+.||+|+||.||+|+. .+|+.||||++.+..........+.+|++++++++|||||++++++.+.+..|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCC
Q ss_conf 14799988998018321378999999999999999999998569999383588999589779994999614688786789
Q 003704 588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667 (801)
Q Consensus 588 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~ivHrDLkp~NILl~~~~~~ki~DfGla~~~~~~ 667 (801)
||+||+|.++|.... ...+++..++.|+.||+.||.|||+. +|+||||||+|||++.++.+||+|||+|+.+...
T Consensus 104 y~~gg~L~~~i~~~~--~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 178 (350)
T 4b9d_A 104 YCEGGDLFKRINAQK--GVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST 178 (350)
T ss_dssp CCTTCBHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCHH
T ss_pred CCCCCCHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCCCHHHEEECCCCCEEECCCCCCEEECCC
T ss_conf 889983999999738--99997899999999999999999989---9151359789979878999897646521440688
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHCCC
Q ss_conf 84322466433467679543-56898972047889999999990998856446555410000114544315566320399
Q 003704 668 SVSQLSGHLLTAYGYGAPEF-ESGIYTCQSDVYSFGVVMLELLTGRKSYDRTRNRGEQFLVRWAIPQLHDIDALSRMVDP 746 (801)
Q Consensus 668 ~~~~~~~~~~~~~~y~aPE~-~~~~~~~k~DvwslGvil~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (801)
. .......||..|+|||+ ....|+.++|||||||++|||++|+.||...... ..+..+...
T Consensus 179 ~--~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~----------------~~~~~i~~~ 240 (350)
T 4b9d_A 179 V--ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMK----------------NLVLKIISG 240 (350)
T ss_dssp H--HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH----------------HHHHHHHHT
T ss_pred C--CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH----------------HHHHHHHCC
T ss_conf 5--4101457883603999987999895999999999999999787998996999----------------999999808
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 878999810189999999981001999999989999999
Q 003704 747 SLSGQYPAKSLSHFADIISRCVQSEPEFRPPMSEVVQDL 785 (801)
Q Consensus 747 ~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L 785 (801)
.. ...+...+.++.+|+.+||+.||++|||+.|++++-
T Consensus 241 ~~-~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp 278 (350)
T 4b9d_A 241 SF-PPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKG 278 (350)
T ss_dssp CC-CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSH
T ss_pred CC-CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCH
T ss_conf 99-999755799999999998558966790899996399
No 5
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=402.45 Aligned_cols=262 Identities=27% Similarity=0.426 Sum_probs=213.5
Q ss_pred CCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEEEE
Q ss_conf 16886678153039608999993999599999934545763559999999998650499972321207872594899995
Q 003704 508 TNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE 587 (801)
Q Consensus 508 ~~~~~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~E 587 (801)
.+++.+.+.||+|+||+||+|++.+ .||||+++.........+.|.+|++++++++|||||+++|++.+ +..++|||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmE 111 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred HHHEEEEEEEEECCCCEEEEEEECC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEEE
T ss_conf 7994984498208886899999899--68999997268999999999999999985899887469999978-95899997
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCC
Q ss_conf 14799988998018321378999999999999999999998569999383588999589779994999614688786789
Q 003704 588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667 (801)
Q Consensus 588 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~ivHrDLkp~NILl~~~~~~ki~DfGla~~~~~~ 667 (801)
||++|+|.++++.. ...++|..++.|+.|++.||+|||+. +||||||||+|||+++++.+||+|||+|+.....
T Consensus 112 y~~gGsL~~~l~~~---~~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~ 185 (307)
T 3omv_A 112 WCEGSSLYKHLHVQ---ETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW 185 (307)
T ss_dssp CCSSCBHHHHHHTS---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC----
T ss_pred CCCCCCHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 48998788987524---89999999999999999999999779---9527855789978889990899441575424667
Q ss_pred CCCCCCCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHH
Q ss_conf 843224664334676795435----6898972047889999999990998856446555410000114544315566320
Q 003704 668 SVSQLSGHLLTAYGYGAPEFE----SGIYTCQSDVYSFGVVMLELLTGRKSYDRTRNRGEQFLVRWAIPQLHDIDALSRM 743 (801)
Q Consensus 668 ~~~~~~~~~~~~~~y~aPE~~----~~~~~~k~DvwslGvil~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (801)
..........||+.|+|||++ .+.|+.++|||||||++|||+||+.||.......... ..+...
T Consensus 186 ~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~------------~~~~~~ 253 (307)
T 3omv_A 186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQII------------FMVGRG 253 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHH------------HHHHTT
T ss_pred CCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH------------HHHHCC
T ss_conf 76403156446877249878614689987868775728999999997889989999699999------------999658
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 39987899981018999999998100199999998999999999987
Q 003704 744 VDPSLSGQYPAKSLSHFADIISRCVQSEPEFRPPMSEVVQDLVDMIR 790 (801)
Q Consensus 744 ~~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~~~~ 790 (801)
.........+..++.++.+|+.+||+.||++|||+.|+++.|+.+.+
T Consensus 254 ~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~ 300 (307)
T 3omv_A 254 YASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQH 300 (307)
T ss_dssp CCCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHC
T ss_conf 88887200354456999999999757797689098999999999745
No 6
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=397.67 Aligned_cols=271 Identities=26% Similarity=0.439 Sum_probs=221.0
Q ss_pred HHHHHHCCCCCCCCEEEECCCCEEEEEEEC------CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-CCCCCCCE
Q ss_conf 657543168866781530396089999939------99599999934545763559999999998650499-97232120
Q 003704 502 ASLQQYTNSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRH-ANIVELKG 574 (801)
Q Consensus 502 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~~~~e~~~l~~l~H-pniv~l~~ 574 (801)
+..+...++|++.+.||+|+||.||+|... .++.||||.+.... .....+.|.+|++++.+++| ||||+++|
T Consensus 57 ~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~-~~~~~~~~~~E~~il~~l~hhpnIV~l~g 135 (353)
T 4ase_A 57 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA-THSEHRALMSELKILIHIGHHLNVVNLLG 135 (353)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred CCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCC-CHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 55170579959820982178959999998688854477599999976235-86899999999999997579984877889
Q ss_pred EEEEC-CEEEEEEECCCCCCHHHHHHCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC
Q ss_conf 78725-948999951479998899801832------------13789999999999999999999985699993835889
Q 003704 575 YCAEH-GQRLLIYEYCSNGTLQDMLHSDDE------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFK 641 (801)
Q Consensus 575 ~~~~~-~~~~lV~E~~~~gsL~~~l~~~~~------------~~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~ivHrDLk 641 (801)
+|.+. +..++|||||++|+|.++|+.... ....+++..++.|+.||+.||.|||+. +|||||||
T Consensus 136 ~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDLK 212 (353)
T 4ase_A 136 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLA 212 (353)
T ss_dssp EECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCS
T ss_pred EEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCC
T ss_conf 999469779999983898979999974356665433341011035689999999999999998767627---84357467
Q ss_pred CCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCC
Q ss_conf 995897799949996146887867898432246643346767954-356898972047889999999990-998856446
Q 003704 642 SANILLDDDLAVSVSDCGLAPLISSGSVSQLSGHLLTAYGYGAPE-FESGIYTCQSDVYSFGVVMLELLT-GRKSYDRTR 719 (801)
Q Consensus 642 p~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE-~~~~~~~~k~DvwslGvil~ellt-G~~Pf~~~~ 719 (801)
|+|||++.++.+||+|||+|+.+.............||+.|+||| +..+.|+.++|||||||++|||+| |+.||....
T Consensus 213 ~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~ 292 (353)
T 4ase_A 213 ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 292 (353)
T ss_dssp GGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred CCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCC
T ss_conf 21130579997897965432224568872032540146665698999469999755374068999999818999999989
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5554100001145443155663203998789998101899999999810019999999899999999998764
Q 003704 720 NRGEQFLVRWAIPQLHDIDALSRMVDPSLSGQYPAKSLSHFADIISRCVQSEPEFRPPMSEVVQDLVDMIRRE 792 (801)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~~~~~~ 792 (801)
.. ..+...+........|..++.++.+++.+||+.||++|||+.|++++|.++++..
T Consensus 293 ~~----------------~~~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~ 349 (353)
T 4ase_A 293 ID----------------EEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 349 (353)
T ss_dssp CS----------------HHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred HH----------------HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHH
T ss_conf 89----------------9999999738988888657899999999976869667939999999999999875
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=396.13 Aligned_cols=251 Identities=24% Similarity=0.361 Sum_probs=208.5
Q ss_pred CCCCCCCCEEEECCCCEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEEE
Q ss_conf 16886678153039608999993-99959999993454576355999999999865049997232120787259489999
Q 003704 508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY 586 (801)
Q Consensus 508 ~~~~~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~ 586 (801)
.+.|+..+.||+|+||.||+|+. .+|+.||||++..... .....+.+|+++++.++|||||++++++.+.+..|+||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~--~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVm 227 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ--QRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVM 227 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTC--SSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCH--HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 6843861696248184899999999998999999862554--68999999999998579989871689999899999999
Q ss_pred ECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCC
Q ss_conf 51479998899801832137899999999999999999999856999938358899958977999499961468878678
Q 003704 587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666 (801)
Q Consensus 587 E~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~ivHrDLkp~NILl~~~~~~ki~DfGla~~~~~ 666 (801)
|||+||+|.+++.. ..+++..+..|+.||+.||+|||+. +||||||||+|||++.++.+||+|||+|+.+..
T Consensus 228 Ey~~gG~L~~~i~~-----~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~ 299 (423)
T 4fie_A 228 EFLEGGALTDIVTH-----TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK 299 (423)
T ss_dssp ECCTTEEHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCS
T ss_pred ECCCCCCHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEECCCCCEEEECCCCCEECCC
T ss_conf 69899828988761-----6989999999999999999999988---904465787778985899989803726547778
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHCC
Q ss_conf 984322466433467679543-5689897204788999999999099885644655541000011454431556632039
Q 003704 667 GSVSQLSGHLLTAYGYGAPEF-ESGIYTCQSDVYSFGVVMLELLTGRKSYDRTRNRGEQFLVRWAIPQLHDIDALSRMVD 745 (801)
Q Consensus 667 ~~~~~~~~~~~~~~~y~aPE~-~~~~~~~k~DvwslGvil~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (801)
... .....+||..|||||+ ....|+.++|||||||++|||++|+.||........ ...+.....
T Consensus 300 ~~~--~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~-------------~~~i~~~~~ 364 (423)
T 4fie_A 300 EVP--RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA-------------MKMIRDNLP 364 (423)
T ss_dssp SCC--CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH-------------HHHHHHSCC
T ss_pred CCC--CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH-------------HHHHHCCCC
T ss_conf 876--43466647472799997799999689999999999999978799898699999-------------999972799
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 9878999810189999999981001999999989999999
Q 003704 746 PSLSGQYPAKSLSHFADIISRCVQSEPEFRPPMSEVVQDL 785 (801)
Q Consensus 746 ~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L 785 (801)
. ....+...+.++.+|+.+||+.||++|||+.|+++|-
T Consensus 365 ~--~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~Hp 402 (423)
T 4fie_A 365 P--RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHP 402 (423)
T ss_dssp C--CCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTCG
T ss_pred C--CCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCH
T ss_conf 8--8765012999999999998678956890999996098
No 8
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=395.02 Aligned_cols=252 Identities=21% Similarity=0.323 Sum_probs=211.7
Q ss_pred CCCCCCCEEEECCCCEEEEEEE-CCCCEEEEEEECCCCC-CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEEE
Q ss_conf 6886678153039608999993-9995999999345457-6355999999999865049997232120787259489999
Q 003704 509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY 586 (801)
Q Consensus 509 ~~~~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~ 586 (801)
++|++.+.||+|+||+||+|+. .+|+.||||++.+... .......+.+|++++++++|||||++++++.+.+..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
T ss_conf 23689889831648499999999999899999988888779789999999999998679989891999997389899999
Q ss_pred ECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCC
Q ss_conf 51479998899801832137899999999999999999999856999938358899958977999499961468878678
Q 003704 587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666 (801)
Q Consensus 587 E~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~ivHrDLkp~NILl~~~~~~ki~DfGla~~~~~ 666 (801)
||++||+|.+++.. ...+++..+..++.||+.||+|||+. +|+||||||+|||++.++.+||+|||+|+.+..
T Consensus 112 Ey~~gG~L~~~i~~----~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~ 184 (311)
T 4aw0_A 112 SYAKNGELLKYIRK----IGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSP 184 (311)
T ss_dssp CCCTTEEHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred ECCCCCCHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf 64899899999987----49999999999999999999999988---782687878996985898889987687502577
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHCC
Q ss_conf 984322466433467679543-5689897204788999999999099885644655541000011454431556632039
Q 003704 667 GSVSQLSGHLLTAYGYGAPEF-ESGIYTCQSDVYSFGVVMLELLTGRKSYDRTRNRGEQFLVRWAIPQLHDIDALSRMVD 745 (801)
Q Consensus 667 ~~~~~~~~~~~~~~~y~aPE~-~~~~~~~k~DvwslGvil~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (801)
..........+||+.|+|||+ ....|+.++||||+||++|||++|+.||...... ..+..+..
T Consensus 185 ~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~----------------~~~~~i~~ 248 (311)
T 4aw0_A 185 ESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEG----------------LIFAKIIK 248 (311)
T ss_dssp TTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHH----------------HHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH----------------HHHHHHHC
T ss_conf 87765436755680307998976899996898998999999997498998997999----------------99999971
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 9878999810189999999981001999999989999999
Q 003704 746 PSLSGQYPAKSLSHFADIISRCVQSEPEFRPPMSEVVQDL 785 (801)
Q Consensus 746 ~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L 785 (801)
.. ..+|...+.++.+|+.+||+.||++|||+.|++.+-
T Consensus 249 ~~--~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~~ 286 (311)
T 4aw0_A 249 LE--YDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYG 286 (311)
T ss_dssp TC--CCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCHH
T ss_pred CC--CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHCCCH
T ss_conf 99--999965699999999997628975780967975877
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=392.19 Aligned_cols=258 Identities=21% Similarity=0.246 Sum_probs=211.8
Q ss_pred CCCCCCCEEEECCCCEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEEEE
Q ss_conf 6886678153039608999993-999599999934545763559999999998650499972321207872594899995
Q 003704 509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE 587 (801)
Q Consensus 509 ~~~~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~E 587 (801)
+.|...++||+|+||.||+|+. .+|+.||||++..... ..+|+.+++.++|||||++++++.+.+..|+|||
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmE 130 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-------RVEELVACAGLSSPRIVPLYGAVREGPWVNIFME 130 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred HHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-------HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 351768685138780999999889998999999788886-------9999999985799899939999998999999996
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC-CEEEEECCCCCCCCC
Q ss_conf 1479998899801832137899999999999999999999856999938358899958977999-499961468878678
Q 003704 588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL-AVSVSDCGLAPLISS 666 (801)
Q Consensus 588 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~ivHrDLkp~NILl~~~~-~~ki~DfGla~~~~~ 666 (801)
||+||+|.+++.. ...+++..+..|+.|++.||+|||+. +|+||||||+|||++.++ .+||+|||+|+.+..
T Consensus 131 y~~gg~L~~~l~~----~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~ 203 (336)
T 4g3f_A 131 LLEGGSLGQLIKQ----MGCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQP 203 (336)
T ss_dssp CCTTCBHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC--
T ss_pred CCCCCCHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHC---CCEECCCCHHHEEEECCCCEEEEEECCCCEECCC
T ss_conf 6599869999987----69999999999999999999999988---9042616778879958999799962787768567
Q ss_pred CCCC---CCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHH
Q ss_conf 9843---2246643346767954-35689897204788999999999099885644655541000011454431556632
Q 003704 667 GSVS---QLSGHLLTAYGYGAPE-FESGIYTCQSDVYSFGVVMLELLTGRKSYDRTRNRGEQFLVRWAIPQLHDIDALSR 742 (801)
Q Consensus 667 ~~~~---~~~~~~~~~~~y~aPE-~~~~~~~~k~DvwslGvil~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (801)
.... .......||+.|+||| +....|+.++|||||||++|||++|+.||.......... .+..
T Consensus 204 ~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~-------------~i~~ 270 (336)
T 4g3f_A 204 DGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCL-------------KIAS 270 (336)
T ss_dssp ----------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHH-------------HHHH
T ss_pred CCCCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH-------------HHHC
T ss_conf 876540221785455802008999889998908999999999999997869989989999999-------------9980
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 03998789998101899999999810019999999899999999998764104
Q 003704 743 MVDPSLSGQYPAKSLSHFADIISRCVQSEPEFRPPMSEVVQDLVDMIRRERCS 795 (801)
Q Consensus 743 ~~~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~~~~~~~~~ 795 (801)
.......++..++.++.+|+.+||+.||++|||+.|++++|..++++...-
T Consensus 271 --~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l 321 (336)
T 4g3f_A 271 --EPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGL 321 (336)
T ss_dssp --SCCGGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSS
T ss_pred --CCCCCHHCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf --899800258667999999999976289768959999999999997544321
No 10
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=392.00 Aligned_cols=251 Identities=24% Similarity=0.361 Sum_probs=208.1
Q ss_pred CCCCCCCCEEEECCCCEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEEE
Q ss_conf 16886678153039608999993-99959999993454576355999999999865049997232120787259489999
Q 003704 508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY 586 (801)
Q Consensus 508 ~~~~~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~ 586 (801)
.+.|+..+.||+|+||.||+|+. .+|+.||||++..... ...+.+.+|++++++++|||||++++++.+.+..|+||
T Consensus 73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~--~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivm 150 (346)
T 4fih_A 73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ--QRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVM 150 (346)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGC--SSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HHHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCH--HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 5753870796027282999999989998999999852765--68999999999998679989991999999899999999
Q ss_pred ECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCC
Q ss_conf 51479998899801832137899999999999999999999856999938358899958977999499961468878678
Q 003704 587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666 (801)
Q Consensus 587 E~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~~L~~LH~~~~~~ivHrDLkp~NILl~~~~~~ki~DfGla~~~~~ 666 (801)
|||+||+|.+++.. ..+++..+..|+.||+.||+|||+. +|+||||||+|||++.++.+||+|||+|+.+..
T Consensus 151 Ey~~gg~L~~~l~~-----~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 222 (346)
T 4fih_A 151 EFLEGGALTDIVTH-----TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK 222 (346)
T ss_dssp CCCTTEEHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCS
T ss_pred ECCCCCCHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEECCCCCEECCC
T ss_conf 69899808999871-----8989999999999999999999988---835562788997887999889902757536678
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHCC
Q ss_conf 984322466433467679543-5689897204788999999999099885644655541000011454431556632039
Q 003704 667 GSVSQLSGHLLTAYGYGAPEF-ESGIYTCQSDVYSFGVVMLELLTGRKSYDRTRNRGEQFLVRWAIPQLHDIDALSRMVD 745 (801)
Q Consensus 667 ~~~~~~~~~~~~~~~y~aPE~-~~~~~~~k~DvwslGvil~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (801)
... ......||..|+|||+ ....|+.++||||+||++|||++|+.||........ ...+.....
T Consensus 223 ~~~--~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~-------------~~~i~~~~~ 287 (346)
T 4fih_A 223 EVP--RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA-------------MKMIRDNLP 287 (346)
T ss_dssp SSC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH-------------HHHHHHSSC
T ss_pred CCC--CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH-------------HHHHHCCCC
T ss_conf 877--53465627582799997799999689999999999999978799898599999-------------999971799
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 9878999810189999999981001999999989999999
Q 003704 746 PSLSGQYPAKSLSHFADIISRCVQSEPEFRPPMSEVVQDL 785 (801)
Q Consensus 746 ~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L 785 (801)
+ ....+...+.++.+|+.+||+.||++|||+.|+++|-
T Consensus 288 ~--~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~Hp 325 (346)
T 4fih_A 288 P--RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHP 325 (346)
T ss_dssp C--CCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCG
T ss_pred C--CCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCH
T ss_conf 9--8875022999999999998679956890999996098
Done!