Query 003705
Match_columns 801
No_of_seqs 119 out of 121
Neff 4.3
Searched_HMMs 29240
Date Tue Mar 26 18:00:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003705.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1755-1759//hhsearch_pdb/003705hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fhn_B Nucleoporin NUP120; pro 1.0 1 1 25.5 6.0 169 268-466 843-1045(1139)
2 3i5p_A Nucleoporin NUP170; hel 1.0 1 1 20.6 7.7 35 311-347 229-263 (525)
3 3mkq_A Coatomer beta'-subunit; 1.0 1 1 19.3 9.2 160 262-470 597-765 (814)
4 3mkr_A Coatomer subunit epsilo 1.0 1 1 18.1 11.1 159 269-468 103-262 (291)
5 4ady_A RPN2, 26S proteasome re 1.0 1 1 13.8 1.4 14 6-19 15-28 (963)
6 3o2i_A Uncharacterized protein 1.0 1 1 13.3 -4.1 60 253-316 59-123 (125)
7 3ieg_A DNAJ homolog subfamily 1.0 1 1 12.9 9.9 161 270-468 157-333 (359)
8 1k8k_G P16, ARP2/3 complex 16 1.0 1 1 12.9 6.4 30 303-337 39-68 (151)
9 1tff_A Ubiquitin thiolesterase 1.0 1 1 12.2 -3.0 43 8-70 147-189 (234)
10 2az0_A B2 protein; protein-RNA 1.0 1 1 12.2 2.6 50 47-98 1-50 (73)
No 1
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=1.00 E-value=1 Score=25.55 Aligned_cols=169 Identities=11% Similarity=0.079 Sum_probs=100.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC----------------------------CCCHHHHHHHHHCCCCCHHHH
Q ss_conf 5998857531468885789999532789989----------------------------999699999998079941367
Q 003705 268 SLLESLTFYLLDDQADEALQEACHLLPEISG----------------------------PTTHPKIAQVLLERENPEAAL 319 (801)
Q Consensus 268 ~~~~iqgfWlLDdh~d~aleeAl~LLP~is~----------------------------P~~h~kIiqvLl~~g~~d~AL 319 (801)
...+++|.-+|+ -+++ ++|+.+.-..+. +.+.-+|+.-|-.++.++.++
T Consensus 843 ~~~yl~g~~~L~-~ge~--~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi 919 (1139)
T 4fhn_B 843 IAVYLKALIYLK-SKEA--VKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 919 (1139)
T ss_dssp HHHHHHHHHHHH-TTCH--HHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHH-CCCH--HHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 899999999986-6998--9999999998634045630233201110012223332117999999999998718989999
Q ss_pred HHHHHC-CCCCCCCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 788551-6899997668689--9999999995099469999977410588753201477676543445684314789999
Q 003705 320 MVLRWS-GRDGGSLLVSLSE--AVTAVRIRVECALLTEAFTYQRMLCTKVREKKLKFGTIGETFDDLQGGFKTWEQWLEV 396 (801)
Q Consensus 320 ~ylr~~-g~~~~P~l~slsE--A~l~l~VlLan~litEAF~~~R~~~~~~~e~~~~~~~~~~~~~~~~~~~~~w~~~~E~ 396 (801)
.+.+.. ... .+....+.. ....++-.|+-+..-||+.-.-..++.... -+.+.+
T Consensus 920 ~fa~lAi~~~-~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r----------------------~~cLr~ 976 (1139)
T 4fhn_B 920 EFSLLADASK-ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK----------------------KSCLLD 976 (1139)
T ss_dssp HHHHHHHHHC-CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC----------------------HHHHHH
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHH----------------------HHHHHH
T ss_conf 9999998741-68980457899999999987627799999999868998999----------------------999999
Q ss_pred HHHHHHHHHHHCCHHHHHHCCCCCHHHHHH---HHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 999999763310058886309998146999---9999621899999887542789999950591689988998
Q 003705 397 LVTEICCLCIRRNLVDRMIELPWNTDEEKY---LHKCLLDSATDDPSTTVGSLLVVFYIQRYRYAEAYQVNLK 466 (801)
Q Consensus 397 Ll~~if~~C~~~~~l~~LL~LPLd~eEEk~---L~k~Ll~~~~~~~~~~~~sLLlVyyLQR~RYiEAvql~~k 466 (801)
||..+|+ .+.+++|+.|||...++++ |..-.+...-......+..+|--|++.|++|=.|..+...
T Consensus 977 LV~~lce----~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe 1045 (1139)
T 4fhn_B 977 FVNQLTK----QGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYE 1045 (1139)
T ss_dssp HHHHHHH----HCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHH----CCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999983----89730332799966799999999999872776434887777767420226986899999999
No 2
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=20.63 Aligned_cols=35 Identities=11% Similarity=-0.015 Sum_probs=14.6
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 0799413677885516899997668689999999999
Q 003705 311 ERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRV 347 (801)
Q Consensus 311 ~~g~~d~AL~ylr~~g~~~~P~l~slsEA~l~l~VlL 347 (801)
.++++-.|-.++...... .. -.++++=..++.-.+
T Consensus 229 k~~~~~~AA~VL~~LA~s-~~-~i~L~~RIeyLsrA~ 263 (525)
T 3i5p_A 229 RRSKFFESAEILYRLATS-NF-DITLFERIEFLSRAN 263 (525)
T ss_dssp HCCSHHHHHHHHHHHHSS-SS-CCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHH
T ss_conf 733099999999999727-89-999899999999999
No 3
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=19.35 Aligned_cols=160 Identities=18% Similarity=0.067 Sum_probs=89.4
Q ss_pred HCCCHHHHHHHHHHHHCCCCCCHHHHHHHH-HCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 077934599885753146888578999953-2789989999699999998079941367788551689999766868999
Q 003705 262 FSITRHSLLESLTFYLLDDQADEALQEACH-LLPEISGPTTHPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAV 340 (801)
Q Consensus 262 F~Ip~~~~~~iqgfWlLDdh~d~aleeAl~-LLP~is~P~~h~kIiqvLl~~g~~d~AL~ylr~~g~~~~P~l~slsEA~ 340 (801)
+.+....+.+..++ . ..++ ++|.. ++|.+..+.....++.-|...|.++.|+.+.+-. .
T Consensus 597 ~~l~~~~~~~~~~~---~-~~~~--~~a~~~~l~~i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------------~ 656 (814)
T 3mkq_A 597 YEISLEVLEFQTLT---L-RGEI--EEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQ--------------D 656 (814)
T ss_dssp EECCHHHHHHHHHH---H-TTCH--HHHHHHTGGGCCCHHHHHHHHHHHHHTTCHHHHHHHCCCH--------------H
T ss_pred EEECCHHHHHHHHH---H-HCCH--HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHEECCCCC--------------C
T ss_conf 99890999996998---7-0799--9999888742884678999999998689868960527893--------------1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH--------HHHHHHHHHHCCHHH
Q ss_conf 999999950994699999774105887532014776765434456843147899999--------999997633100588
Q 003705 341 TAVRIRVECALLTEAFTYQRMLCTKVREKKLKFGTIGETFDDLQGGFKTWEQWLEVL--------VTEICCLCIRRNLVD 412 (801)
Q Consensus 341 l~l~VlLan~litEAF~~~R~~~~~~~e~~~~~~~~~~~~~~~~~~~~~w~~~~E~L--------l~~if~~C~~~~~l~ 412 (801)
..+...++++.+-+|+...+...+.. .|....+.. ....|..|.....+.
T Consensus 657 ~~f~~~l~~~~~~~A~~~~~~~~~~~----------------------~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~ 714 (814)
T 3mkq_A 657 QKFELALKVGQLTLARDLLTDESAEM----------------------KWRALGDASLQRFNFKLAIEAFTNAHDLESLF 714 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTCCCHH----------------------HHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHEEHHHHCCCHHHHHHHHHHHCCHH----------------------HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHH
T ss_conf 42502145099999999998617676----------------------89999999998499899999998702713558
Q ss_pred HHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 8630999814699999996218999998875427899999505916899889985443
Q 003705 413 RMIELPWNTDEEKYLHKCLLDSATDDPSTTVGSLLVVFYIQRYRYAEAYQVNLKLQSV 470 (801)
Q Consensus 413 ~LL~LPLd~eEEk~L~k~Ll~~~~~~~~~~~~sLLlVyyLQR~RYiEAvql~~kL~s~ 470 (801)
.|....=+.+.-.-+-+..... +. -+.-...|++-+++-+|+++..+++..
T Consensus 715 ~l~~~~~~~~~~~~~~~~a~~~-~~------~~~A~~~~~~~g~~~~a~~~~~~~~~~ 765 (814)
T 3mkq_A 715 LLHSSFNNKEGLVTLAKDAETT-GK------FNLAFNAYWIAGDIQGAKDLLIKSQRF 765 (814)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT-TC------HHHHHHHHHHHTCHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHC-CC------HHHHHHHHHHCCCHHHHHHHHHHCCCH
T ss_conf 9987729999999999999985-86------679999998809999999999986994
No 4
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=1.00 E-value=1 Score=18.08 Aligned_cols=159 Identities=15% Similarity=0.055 Sum_probs=84.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99885753146888578999953278998999969999999807994136778855168999976686899999999995
Q 003705 269 LLESLTFYLLDDQADEALQEACHLLPEISGPTTHPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVE 348 (801)
Q Consensus 269 ~~~iqgfWlLDdh~d~aleeAl~LLP~is~P~~h~kIiqvLl~~g~~d~AL~ylr~~g~~~~P~l~slsEA~l~l~VlLa 348 (801)
.....|..++. .+++ ++|+..+-....+..+-..+++++..|+++.|+..++..-.. .|.-.-..-+...+..+..
T Consensus 103 ~~~~la~~~~~-~g~~--~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-~p~~~~~~l~~a~~~l~~~ 178 (291)
T 3mkr_A 103 FLLMAASIYFY-DQNP--DAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-DEDATLTQLATAWVSLAAG 178 (291)
T ss_dssp HHHHHHHHHHH-TTCH--HHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-CCCH--HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHC
T ss_conf 99999999997-7999--999999848898899999999998779999999999999865-8674999999999999868
Q ss_pred CCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 09946999997741058875320147767654344568431478999999999976331005888630999814699999
Q 003705 349 CALLTEAFTYQRMLCTKVREKKLKFGTIGETFDDLQGGFKTWEQWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLH 428 (801)
Q Consensus 349 n~litEAF~~~R~~~~~~~e~~~~~~~~~~~~~~~~~~~~~w~~~~E~Ll~~if~~C~~~~~l~~LL~LPLd~eEEk~L~ 428 (801)
.+...||+...+........ + .. ++. ++..-+..+==-++-+++|.
T Consensus 179 ~~~~~eA~~~~~~~l~~~p~---------~---------------~~-~~~---------~la~~~~~~g~~~eA~~~l~ 224 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADKCSP---------T---------------LL-LLN---------GQAACHMAQGRWEAAEGVLQ 224 (291)
T ss_dssp TTHHHHHHHHHHHHHHHSCC---------C---------------HH-HHH---------HHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCC---------C---------------HH-HHH---------HHHHHHHHCCCHHHHHHHHH
T ss_conf 41899999999999976799---------6---------------99-999---------99999998399999999999
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHH-HHHHHHHH
Q ss_conf 99621899999887542789999950591689-98899854
Q 003705 429 KCLLDSATDDPSTTVGSLLVVFYIQRYRYAEA-YQVNLKLQ 468 (801)
Q Consensus 429 k~Ll~~~~~~~~~~~~sLLlVyyLQR~RYiEA-vql~~kL~ 468 (801)
+.|...+.. + . +-.-+.+.+.+.|++.|| ..+.+++.
T Consensus 225 ~al~~~p~~-~-~-~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 225 EALDKDSGH-P-E-TLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHCTTC-H-H-HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHCCCC-H-H-HHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 999748999-9-9-999999999981998899999999999
No 5
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=1.00 E-value=1 Score=13.75 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=6.8
Q ss_pred CCCHHHHHHHCCHH
Q ss_conf 78624888531237
Q 003705 6 VSSDPVVAFLLDEV 19 (801)
Q Consensus 6 ~ssd~~~afLld~~ 19 (801)
+..-|++|.|-++.
T Consensus 15 ~~a~~~l~lL~e~~ 28 (963)
T 4ady_A 15 TTAAPLLALLRENQ 28 (963)
T ss_dssp CCSHHHHHHTTSSC
T ss_pred HHHHHHHHHHCCCC
T ss_conf 65899999865996
No 6
>3o2i_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Leptospirillum rubarum}
Probab=1.00 E-value=1 Score=13.28 Aligned_cols=60 Identities=18% Similarity=0.284 Sum_probs=30.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC--CCH---HHHHHHHHCCCCCH
Q ss_conf 68999885707793459988575314688857899995327899899--996---99999998079941
Q 003705 253 HIVDDFAATFSITRHSLLESLTFYLLDDQADEALQEACHLLPEISGP--TTH---PKIAQVLLERENPE 316 (801)
Q Consensus 253 ~~le~Fa~tF~Ip~~~~~~iqgfWlLDdh~d~aleeAl~LLP~is~P--~~h---~kIiqvLl~~g~~d 316 (801)
-+++.|..+..-|++.+.+--+-|+.|-|+ | -+|-.+ -+|+.| |-- ...|+.|+.+++.+
T Consensus 59 LLLEA~~~sSsS~W~~QiLE~srYLi~~HG-F--~~AGGL-~~I~~P~E~SK~~V~~~i~~~L~rDRSD 123 (125)
T 3o2i_A 59 LLLEAFQRSSASDWHLQILEVSKYLVTAHG-F--VEAGGL-QEIGFPGELSKTEVRRRINAFLGKDRSD 123 (125)
T ss_dssp HHHHHHTTSCSCCHHHHHHHHHHHHHHHHC-C--EEECCE-EEEEEETTCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCC-C--CCCCCE-EEECCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999752388389999999999885026-3--005874-7843721450889999999986746556
No 7
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=1.00 E-value=1 Score=12.93 Aligned_cols=161 Identities=11% Similarity=-0.009 Sum_probs=70.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHCCC-----CCCCCCHHHHHHHHHCCCCCHHHHHHHHHC-CCCCCCCCCCHH------
Q ss_conf 98857531468885789999532789-----989999699999998079941367788551-689999766868------
Q 003705 270 LESLTFYLLDDQADEALQEACHLLPE-----ISGPTTHPKIAQVLLERENPEAALMVLRWS-GRDGGSLLVSLS------ 337 (801)
Q Consensus 270 ~~iqgfWlLDdh~d~aleeAl~LLP~-----is~P~~h~kIiqvLl~~g~~d~AL~ylr~~-g~~~~P~l~sls------ 337 (801)
....|..++. .+++ ++|+..+-. ...+.....+..++...|+++.|+.+++.. ... |.....-
T Consensus 157 ~~~~~~~~~~-~~~~--~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 157 RELRAECFIK-EGEP--RKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHH-TTCH--HHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
T ss_conf 9999999987-7899--999999999987397777999999999998498999999999998518--5645899999999
Q ss_pred ----HHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf ----9999999999509946999997741058875320147767654344568431478999999999976331005888
Q 003705 338 ----EAVTAVRIRVECALLTEAFTYQRMLCTKVREKKLKFGTIGETFDDLQGGFKTWEQWLEVLVTEICCLCIRRNLVDR 413 (801)
Q Consensus 338 ----EA~l~l~VlLan~litEAF~~~R~~~~~~~e~~~~~~~~~~~~~~~~~~~~~w~~~~E~Ll~~if~~C~~~~~l~~ 413 (801)
.......+++..+...+|..+.+........ + ...|.. .-..+..++ ...+..
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------~--------~~~~~~-~~~~la~~~---~~~~~~-- 288 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS---------V--------AEYTVR-SKERICHCF---SKDEKP-- 288 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---------S--------HHHHHH-HHHHHHHHH---HHTTCH--
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC---------C--------HHHHHH-HHHHHHHHH---HHCCCH--
T ss_conf 99999999999999868999999999999853988---------6--------279999-999999999---883688--
Q ss_pred HHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 6309998146999999962189999988754278999995059168998899854
Q 003705 414 MIELPWNTDEEKYLHKCLLDSATDDPSTTVGSLLVVFYIQRYRYAEAYQVNLKLQ 468 (801)
Q Consensus 414 LL~LPLd~eEEk~L~k~Ll~~~~~~~~~~~~sLLlVyyLQR~RYiEAvql~~kL~ 468 (801)
++-.+++.+.+...+.. + ..-..+-..|.+.++|-+|.....+.-
T Consensus 289 -------~~A~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 289 -------VEAIRICSEVLQMEPDN-V--NALKDRAEAYLIEEMYDEAIQDYEAAQ 333 (359)
T ss_dssp -------HHHHHHHHHHHHHCTTC-H--HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHCCCC-H--HHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf -------99999999999859223-7--999999999988078999999999998
No 8
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=1.00 E-value=1 Score=12.93 Aligned_cols=30 Identities=20% Similarity=0.034 Sum_probs=19.4
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 99999998079941367788551689999766868
Q 003705 303 PKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLS 337 (801)
Q Consensus 303 ~kIiqvLl~~g~~d~AL~ylr~~g~~~~P~l~sls 337 (801)
..=+..|+.+|++..||+.+-.- ||+.+-.
T Consensus 39 ~~qv~~lL~~g~~~~ALk~~L~~-----pP~~~k~ 68 (151)
T 1k8k_G 39 EGEVDSCLRQGNMTAALQAALKN-----PPINTKS 68 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTSS-----CCSSCSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHC-----CCCCCCC
T ss_conf 99999999778999999999838-----9989984
No 9
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=1.00 E-value=1 Score=12.20 Aligned_cols=43 Identities=21% Similarity=0.462 Sum_probs=0.0
Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 624888531237999999999999999999986222688998899999999999617999999
Q 003705 8 SDPVVAFLLDEVVVKDWCKRAFKNIIAELKLIYNLEVEVMKTRLSLLLKFQMKLRDISSVIEV 70 (801)
Q Consensus 8 sd~~~afLld~~vV~dW~~~~~~~~~sel~~I~~~~~~~~~~~l~~L~~c~~qL~~Ls~Vl~~ 70 (801)
+|--+.|+-++.-+.+||.+.++....|.+.| ++..|+..+++
T Consensus 147 ~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~i--------------------ei~ALa~aL~v 189 (234)
T 1tff_A 147 ADFFRHFIDEEMDIKDFCTHEVEPMATECDHI--------------------QITALSQALSI 189 (234)
T ss_dssp HHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHH--------------------HHHHHHHHHTC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCH--------------------HHHHHHHHHCC
T ss_conf 99886451499989999998752240246529--------------------99999998399
No 10
>2az0_A B2 protein; protein-RNA complex, four-helix bundle, viral protein/RNA complex; HET: 5BU; 2.60A {Flock house virus} SCOP: a.30.8.1 PDB: 2az2_A* 2b9z_A
Probab=1.00 E-value=1 Score=12.16 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9988999999999996179999999631011156899978999999999999
Q 003705 47 MKTRLSLLLKFQMKLRDISSVIEVLASSFKDDLSAQVHDLHHFQESILKTKQ 98 (801)
Q Consensus 47 ~~~~l~~L~~c~~qL~~Ls~Vl~~L~~~~k~~~s~~l~DL~~l~e~i~~~~Q 98 (801)
|.++....+.+-..|+.+..+.-++ +++++....-.||.+.++-+.+..|
T Consensus 1 mqs~yeLiq~lP~~l~q~~q~v~~~--t~qda~pnV~kDLdn~~acL~k~~~ 50 (73)
T 2az0_A 1 MPSKLALIQELPDRIQTAVEAAMGM--SYQDAPNNVRRDLDNLHACLNKAKL 50 (73)
T ss_dssp -CCHHHHHHTHHHHHHHHHHTGGGS--CCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9518999999789999999999987--8750680688878999999999999
Done!