Query 003705
Match_columns 801
No_of_seqs 119 out of 121
Neff 4.3
Searched_HMMs 13730
Date Tue Mar 26 18:04:46 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003705.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1755-1759//hhsearch_scop/003705hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jmxa1 a.3.1.7 (A:2-85) Quino 9.0 33 0.0024 8.4 3.9 33 412-444 44-76 (84)
2 d1pbya1 a.3.1.7 (A:1-85) Quino 7.8 40 0.0029 7.7 3.9 33 412-444 44-76 (85)
3 d1s7oa_ a.4.13.3 (A:) Hypothet 3.3 1.2E+02 0.0084 4.4 3.0 13 230-242 21-33 (106)
4 d1llda2 d.162.1.1 (A:150-319) 3.3 1.2E+02 0.0084 4.4 0.1 27 406-432 133-159 (170)
5 d1k8kg_ a.118.13.1 (G:) Arp2/3 3.1 1.3E+02 0.0093 4.1 7.0 21 305-325 33-53 (143)
6 d1y6ja2 d.162.1.1 (A:149-317) 3.0 1.3E+02 0.0096 3.9 0.3 26 407-432 133-158 (169)
7 d1b8pa2 d.162.1.1 (A:159-329) 2.9 1.3E+02 0.0095 4.0 -0.1 27 407-433 132-158 (171)
8 d1wf9a1 d.15.1.1 (A:8-101) NPL 2.8 92 0.0067 5.1 -1.0 59 527-588 11-75 (94)
9 d1ldma2 d.162.1.1 (A:161-329) 2.6 1.5E+02 0.011 3.6 -0.2 28 406-433 132-159 (169)
10 d5mdha2 d.162.1.1 (A:155-333) 2.6 1.6E+02 0.012 3.3 0.0 25 406-430 137-161 (179)
No 1
>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}
Probab=9.02 E-value=33 Score=8.39 Aligned_cols=33 Identities=33% Similarity=0.348 Sum_probs=25.7
Q ss_pred HHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 886309998146999999962189999988754
Q 003705 412 DRMIELPWNTDEEKYLHKCLLDSATDDPSTTVG 444 (801)
Q Consensus 412 ~~LL~LPLd~eEEk~L~k~Ll~~~~~~~~~~~~ 444 (801)
...-++|++++|++-+.+||.+.-+..|.++.+
T Consensus 44 ~~~~Ga~l~~~e~~~Iv~YLa~~yG~~p~e~~~ 76 (84)
T d1jmxa1 44 QVMHGLQISDDDRRTLVKYLADKQGLAPSETDG 76 (84)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHHHTCCCGGGSTT
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 998499999899999999999975999632356
No 2
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=7.76 E-value=40 Score=7.75 Aligned_cols=33 Identities=15% Similarity=0.069 Sum_probs=25.9
Q ss_pred HHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 886309998146999999962189999988754
Q 003705 412 DRMIELPWNTDEEKYLHKCLLDSATDDPSTTVG 444 (801)
Q Consensus 412 ~~LL~LPLd~eEEk~L~k~Ll~~~~~~~~~~~~ 444 (801)
...-++|++++|++-+.+||.+.-+..|.++.+
T Consensus 44 ~~~~Ga~l~~~e~~~Iv~YLa~~yG~~p~e~~~ 76 (85)
T d1pbya1 44 MRNHGVALEPEERAAIVRHLSDTRGLSLAETEE 76 (85)
T ss_dssp HHHSCCCCCHHHHHHHHHHHHHHSCCCSGGGTT
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 988389999899999999999976999642344
No 3
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=3.35 E-value=1.2e+02 Score=4.37 Aligned_cols=13 Identities=38% Similarity=0.355 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 6698788865115
Q 003705 230 AKQAIFLYYLFDR 242 (801)
Q Consensus 230 ~KqaIllYlLLD~ 242 (801)
.+..+.+||+-|+
T Consensus 21 qR~v~~L~y~~~l 33 (106)
T d1s7oa_ 21 QMNYIELYYADDY 33 (106)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999898999199
No 4
>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}
Probab=3.34 E-value=1.2e+02 Score=4.36 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=20.9
Q ss_pred HHCCHHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 310058886309998146999999962
Q 003705 406 IRRNLVDRMIELPWNTDEEKYLHKCLL 432 (801)
Q Consensus 406 ~~~~~l~~LL~LPLd~eEEk~L~k~Ll 432 (801)
+..+=+..+++|||+++|++.|.+...
T Consensus 133 lg~~Gv~~i~~l~L~~~E~~~l~~sa~ 159 (170)
T d1llda2 133 LNRQGVNNTINTPVSDKELAALKRSAE 159 (170)
T ss_dssp EETTEEECCSCCCCCHHHHHHHHHHHH
T ss_pred ECCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 869946999368899999999999999
No 5
>d1k8kg_ a.118.13.1 (G:) Arp2/3 complex 16 kDa subunit ARPC5 {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.09 E-value=1.3e+02 Score=4.05 Aligned_cols=21 Identities=24% Similarity=0.067 Sum_probs=15.1
Q ss_pred HHHHHHCCCCCHHHHHHHHHC
Q ss_conf 999998079941367788551
Q 003705 305 IAQVLLERENPEAALMVLRWS 325 (801)
Q Consensus 305 IiqvLl~~g~~d~AL~ylr~~ 325 (801)
=++.|+..|+...||..+-.-
T Consensus 33 eVrslL~~G~~~~AL~~~L~~ 53 (143)
T d1k8kg_ 33 EVDSCLRQGNMTAALQAALKN 53 (143)
T ss_dssp HHHHHHHTTCHHHHHHHHTSS
T ss_pred HHHHHHHCCCHHHHHHHHHCC
T ss_conf 999999668789999998228
No 6
>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}
Probab=3.00 E-value=1.3e+02 Score=3.94 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=20.8
Q ss_pred HCCHHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 10058886309998146999999962
Q 003705 407 RRNLVDRMIELPWNTDEEKYLHKCLL 432 (801)
Q Consensus 407 ~~~~l~~LL~LPLd~eEEk~L~k~Ll 432 (801)
..+-+.++++|||+++|++.|.+...
T Consensus 133 g~~Gv~~i~~l~Ls~~E~~~l~~s~~ 158 (169)
T d1y6ja2 133 NSEGVQEVLQFNLTPEEEEALRFSAE 158 (169)
T ss_dssp ETTEEEECCCCCCCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 69967999558899999999999999
No 7
>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}
Probab=2.88 E-value=1.3e+02 Score=3.96 Aligned_cols=27 Identities=7% Similarity=0.026 Sum_probs=21.5
Q ss_pred HCCHHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 100588863099981469999999621
Q 003705 407 RRNLVDRMIELPWNTDEEKYLHKCLLD 433 (801)
Q Consensus 407 ~~~~l~~LL~LPLd~eEEk~L~k~Ll~ 433 (801)
..+-+..+.+||++++|++.|.++..+
T Consensus 132 g~~gve~v~~l~L~~~e~~~l~~s~~~ 158 (171)
T d1b8pa2 132 ENGEYKIVQGLSIDAFSQERINVTLNE 158 (171)
T ss_dssp ETTEEEECCCCCCCHHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 098599980788999999999999999
No 8
>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=2.82 E-value=92 Score=5.08 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=36.5
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43312568-88977764522000012478-----9865213578888888875568999998778997
Q 003705 527 SEEVEIPE-KSDLHGSQELKSITLLIPTT-----ADSSLLLPTSNLTPANSSVFESPTGPGRSIKSPH 588 (801)
Q Consensus 527 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (801)
-+-+||+. +.-+-+-++.+-..|-||.. +|-.|+|.++ |..+..+.-.+..|.++..-+
T Consensus 11 ~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~---P~~~~~~~~l~d~~~~L~sl~ 75 (94)
T d1wf9a1 11 LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKS---PSDFLAFTDMADPNLRISSLN 75 (94)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCS---HHHHTTCCSSCCTTCBGGGTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCHHHHCCCC---CCCCCHHHHCCCCCCCHHHCC
T ss_conf 36898649988099999999998399841106423720330478---531101021069856788838
No 9
>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}
Probab=2.57 E-value=1.5e+02 Score=3.63 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHCCHHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 3100588863099981469999999621
Q 003705 406 IRRNLVDRMIELPWNTDEEKYLHKCLLD 433 (801)
Q Consensus 406 ~~~~~l~~LL~LPLd~eEEk~L~k~Ll~ 433 (801)
+..+-+..+++|||+++|++.|..+...
T Consensus 132 lg~~Gv~~v~~l~L~~~E~~~l~~s~~~ 159 (169)
T d1ldma2 132 LNDHGISNIVKMKLKPNEEQQLQKSATT 159 (169)
T ss_dssp EETTEEEEECCCCCCHHHHHHHHHHHHH
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 8499689996377899999999999999
No 10
>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=2.57 E-value=1.6e+02 Score=3.34 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHCCHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 3100588863099981469999999
Q 003705 406 IRRNLVDRMIELPWNTDEEKYLHKC 430 (801)
Q Consensus 406 ~~~~~l~~LL~LPLd~eEEk~L~k~ 430 (801)
+..+-+..+++|||+++|++-|.+.
T Consensus 137 lg~~Gv~~v~~l~L~~~E~~~l~~S 161 (179)
T d5mdha2 137 IKDKTWKIVEGLPINDFSREKMDLT 161 (179)
T ss_dssp EETTEEEECCCCCCCHHHHHHHHHH
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 8299389980787999999999999
Done!