Citrus Sinensis ID: 003706

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-
MAHVVVLQAKYSPLTQPAVHYLPLKPQSQCSNSFRSIRIGICFSHLTIQAQLGTTRTKRKVKPSFFEQIRHKWSHKVISPREKFPWQEEEEEEEEVQNEPETDVESRVRSEPFSSALPNRFVSAPWIHGTDSKEIKFDSPQTKITTKKEDIGDDGLLGSFEKTVVHSAVKEKTVIELDKEGDYNKELKTDEVKIDANPIELSKDRHREVGSLNQKQIKGYHEVDDPSVLPWKRNTDRRRRSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYKLPCVQSFTKHNHTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSANNLENLSKEELMDLCELNYLLDELGPRFKDWPGREPLPVDADLLPPVVPDYKPPLRLLPYGIKPGLRDCETTEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDYIVFYRGNDFLPPVVTDAVKERSKLTDIRQDEEERARHVASALIELKAKGFVGSLVAGTLAETLAATSRWGRQPSYEDVEKMMRDSTLSRHASLLRYLEQKLALAKRKLKMADKALAKVQESLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQNLLTRRQALARSVELQRREGLKHHILDLQERIELVKSELK
cccEEEEEEccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccHHHHHHcccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHccEEEEEEccEEEEEEcccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEcccccHHHHHHHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHcccccEEEEEcccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHccEEEEEEccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccEEEEEEEEccccccccEEEccccccccccccEEEEEEEcccccccHHHHHHHHHHcccccccHHHHHHHcccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccHccccccccHccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccEEEEEEcccccHcHHHHHHHHHHHcccEEEEEcccEEEEEEcccccccccccccccccccccccccHHHHccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccEcccccccccccHHHHHHHHHHHccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MAHVVVLQakyspltqpavhylplkpqsqcsnsfrsirigicFSHLTIQAQLgttrtkrkvkpSFFEQIRhkwshkvisprekfpwqeeeeeeeevqnepetdvesrvrsepfssalpnrfvsapwihgtdskeikfdspqtkittkkedigddgllgsFEKTVVHSAVKEKTVIELdkegdynkelktdevkidanpielskdrhrevgslnqkqikgyhevddpsvlpwkrntdrrRRSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKlkfeephslqmKRTHEILERRTGGLVIWRSGSSVVLFRgmayklpcvqsftkhnhtqqtQDVTNEVMRnvgehpprsamesyvpdsannlenlsKEELMDLCELNYLLDelgprfkdwpgreplpvdadllppvvpdykpplrllpygikpglrdcetTEFRRLarktpphfalgRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKltggtllcrnkdyivfyrgndflppvvTDAVKERSKLTDIRQDEEERARHVASALIELKAKGFVGSLVAGTLAETLAAtsrwgrqpsyedvEKMMRDSTLSRHASLLRYLEQKLALAKRKLKMADKALAKVQEsldpaelpsdletITNEERFLLRKMglsmkpylllgrrgiydgtienmHLHWKYRELVKIIVKGKSFAQVKQIAISLEaesggvlvsldktpkgIAIIVYRgknyvrplklrpqNLLTRRQALARSVELQRREGLKHHILDLQERIELVKSELK
MAHVVVLQakyspltqpaVHYLPLKPQSQCSNSFRSIRIGICFSHLTIqaqlgttrtkrkVKPSffeqirhkwshkvisprekfpwqeeeeeeeevqnepetdvesrvrsepfssalpnrfvsapwihgtdskeikfdspqtkittkkedigddgllGSFEktvvhsavkektvieldkegdynkelktdevkidanpielskdrhrevgslnqkqikgyhevddpsvlpwkrntdrrrrsntelaekmipehelqrLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLkfeephslqmkrtheilerrtgglviWRSGSSVVLFRGMAYKLPCVQSFTKHNHTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSANNLENLSKEELMDLCELNYLLDELGPRFKDWPGREPLPVDADLLPPVVPdykpplrllpygikpglrDCETTEFRRLarktpphfalgrnrELQGLAKAMVKLWEKSaiakiaikrdvmntRNERMAEelkkltggtllcrNKDYIVFYRGNDFLPPVVTDAVKErskltdirqdeeERARHVASALIELKAKGFVGSLVAGTLAEtlaatsrwgrqpsyedVEKMMRDSTLSRHASLLRYLEQKLALAKRKLKMADKALAKVqesldpaelpsdletitNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAISleaesggvlvsldktpkGIAIIvyrgknyvrplklrpqnllTRRQALARSVELQrreglkhhildlqerielvkselk
MAHVVVLQAKYSPLTQPAVHYLPLKPQSQCSNSFRSIRIGICFSHLTIQAQLGTTRTKRKVKPSFFEQIRHKWSHKVISPREKFPWQeeeeeeeeVQNEPETDVESRVRSEPFSSALPNRFVSAPWIHGTDSKEIKFDSPQTKITTKKEDIGDDGLLGSFEKTVVHSAVKEKTVIELDKEGDYNKELKTDEVKIDANPIELSKDRHREVGSLNQKQIKGYHEVDDPSVLPWKRNTDRRRRSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYKLPCVQSFTKHNHTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSANNLENLSKEELMDLCELNYLLDELGPRFKDWPGREplpvdadllppvvpdYKPPLRLLPYGIKPGLRDCETTEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDYIVFYRGNDFLPPVVTDAVKERSKLTDIRQDEEERARHVASALIELKAKGFVGSLVAGTLAETLAATSRWGRQPSYEDVEKMMRDSTLSRHASLLRYleqklalakrklkmadkalakVQESLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQNLLTRRQALARSVELQRREGLKHHILDLQERIELVKSELK
***VVVLQAKYSPLTQPAVHYLPLKPQSQCSNSFRSIRIGICFSHLTIQAQLGTTRTKRKVKPSFFEQIRHKWSHKV*******************************************FVSAPWIH**************************GLLGSFEKTVVHSAVKEKTVIEL********************************************************************************LRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYKLPCVQSFTK*********************************************LMDLCELNYLLDELGPRFKDWPGREPLPVDADLLPPVVPDYKPPLRLLPYGIKPGLRDCETTEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDYIVFYRGNDFLPPVVTDAV******************HVASALIELKAKGFVGSLVAGTLAETLAATSRWG*********************SLLRYLEQKLALAK****************************ITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQNLLTRRQALARSVELQRREGLKHHILDLQ***********
**HVVVLQAKYSPLTQPAVHYLPLKPQSQCSNSFRSIRI*******************************************************************************************************************************************************************************************************************PEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAY*************************************************************LNYLLDELGPRFKDWPGREPLPVDADLLPPVVPDYKPPLRLLPYGIKPGLRDCETTEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDYIVFYRGNDFLPPVVTDAVKERSKLTDIRQDEE***********************************************************SLLRYLEQKLALAKRKLKMADKALA*******************NEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQNLLTRRQALA***************LDLQERIE*V*S***
MAHVVVLQAKYSPLTQPAVHYLPLKPQSQCSNSFRSIRIGICFSHLTIQAQLGTTRTKRKVKPSFFEQIRHKWSHKVISPREK******************************SSALPNRFVSAPWIHGTDSKEIKFDSPQTKITTKKEDIGDDGLLGSFEKTVVHSAVKEKTVIELDKEGDYNKELKTDEVKIDANPIELSKDRHREVGSLNQKQIKGYHEVDDPSVLPWKRNTDRRRRSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYKLPCVQSFTKHNHTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSANNLENLSKEELMDLCELNYLLDELGPRFKDWPGREPLPVDADLLPPVVPDYKPPLRLLPYGIKPGLRDCETTEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDYIVFYRGNDFLPPVVTDAVKERSKLTDIRQDEEERARHVASALIELKAKGFVGSLVAGTLAETLAATSRWGRQPSYEDVEKMMRDSTLSRHASLLRYLEQKLALAKRKLKMADKALAKVQESLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQNLLTRRQALARSVELQRREGLKHHILDLQERIELVKSELK
*AHVVVLQAKYSPLTQPAVHYLPLKPQSQCSNSFRSIRIGICFSHLTIQAQLGTTRTKRKVKPSFFEQIRHKWSHKVISPREK*************************************************************************************VKEKTVIELDKEGDYNKELKTDEVKIDANPI***********************************************EKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYKLPC*************************************************EELMDLCELNYLLDELGPRFKDWPGREPLPVDADLLPPVVPDYKPPLRLLPYGIKPGLRDCETTEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDYIVFYRGNDFLPPVVTDAVKERSKLTDIRQDEEERARHVASALIE************GTLAETLAATSRWGRQPSYEDVEKMMRDSTLSRHASLLRYLEQKLALAKRKLKMADKALAKVQESLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQNLLTRRQALARSVELQRREGLKHHILDLQERIELVKSELK
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAHVVVLQAKYSPLTQPAVHYLPLKPQSQCSNSFRSIRIGICFSHLTIQAQLGTTRTKRKVKPSFFEQIRHKWSHKVISPREKFPWQEEEEEEEEVQNEPETDVESRVRSEPFSSALPNRFVSAPWIHGTDSKEIKFDSPQTKITTKKEDIGDDGLLGSFEKTVVHSAVKEKTVIELDKEGDYNKELKTDEVKIDANPIELSKDRHREVGSLNQKQIKGYHEVDDPSVLPWKRNTDRRRRSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYKLPCVQSFTKHNHTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSANNLENLSKEELMDLCELNYLLDELGPRFKDWPGREPLPVDADLLPPVVPDYKPPLRLLPYGIKPGLRDCETTEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDYIVFYRGNDFLPPVVTDAVKERSKLTDIRQDEEERARHVASALIELKAKGFVGSLVAGTLAETLAATSRWGRQPSYEDVEKMMRDSTLSRHASLxxxxxxxxxxxxxxxxxxxxxxxxxxxxLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQNLLTRRQALARSVELQRREGLKHHILDLQERIELVKSELK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query801 2.2.26 [Sep-21-2011]
Q6YYA3725 Chloroplastic group IIA i no no 0.709 0.783 0.388 1e-104
Q9FYT6715 Chloroplastic group IIA i N/A no 0.631 0.707 0.414 1e-100
Q9LF10720 Chloroplastic group IIA i no no 0.654 0.727 0.388 6e-97
Q67XL4 444 Uncharacterized CRM domai no no 0.214 0.387 0.355 1e-22
Q9SL79701 CRS2-associated factor 1, no no 0.172 0.196 0.286 3e-07
Q84N49 674 CRS2-associated factor 1, N/A no 0.112 0.133 0.351 5e-07
Q6Z4U2428 CRS2-associated factor 1, no no 0.084 0.158 0.351 7e-07
Q5VMQ5 701 CRS2-associated factor 1, no no 0.117 0.134 0.336 9e-07
Q0J7J7366 CRS2-associated factor 2, no no 0.077 0.169 0.367 8e-06
Q657G7 607 CRS2-associated factor 2, no no 0.112 0.148 0.308 9e-06
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1 Back     alignment and function desciption
 Score =  379 bits (973), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 229/589 (38%), Positives = 346/589 (58%), Gaps = 21/589 (3%)

Query: 228 VLPWKRNTDR------RRRSNTEL---AEKMIPEHELQRLRNISLRMLERTKVGSAGITQ 278
            +PW    D       RR   T +   AE  +   EL+RLR  +       +   AGIT 
Sbjct: 124 AVPWAAARDEETKVVLRREKKTRVPTRAETELEAGELERLRRAARGKERWARAKKAGITD 183

Query: 279 ALVDSIHEKW-KLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAY 337
            +V+ +  +W K  E+  ++  EP    M R  EILE +TGGLV+W  G    ++RG +Y
Sbjct: 184 EVVEEVRGQWAKGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGSSY 243

Query: 338 KLPCVQSFTKH----NHTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSANNLENLSKEEL 393
               +++  +H    N+ ++   VT+    + G++  +    +   D A++ ++   +  
Sbjct: 244 ----LENAKRHRDFVNYNEELSPVTSNNPTSQGKYWSKDETLTNDNDEADDKDDKPIKGT 299

Query: 394 MDLCELNYLLDELGPRFKDWPGREPLPVDADLLPPVVPDYKPPLRLLPYGIKPGLRDCET 453
           +   E+N LLD LGPRF DW    PLPVDADLLP VVPD+K P R  P G++P L D E 
Sbjct: 300 LYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALADEEL 359

Query: 454 TEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELK 513
           T  R+ AR  P HF LGRN +LQGLA A++KLWEKS IAK+A+K  + NT +E+MA  LK
Sbjct: 360 TYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQMARNLK 419

Query: 514 KLTGGTLLCRNKDYIVFYRGNDFLPPVVTDAVKERSKLTDIRQDEEERAR-HVASALIEL 572
           +LTGGT++ RNKDYI+ YRG DFLP  V ++V ER      +Q +EE AR  +A +L  +
Sbjct: 420 RLTGGTVILRNKDYIIIYRGKDFLPGGVAESVIERESQVHDQQAKEEEARLKMADSLQMI 479

Query: 573 KAKGFVGSLVAGTLAETLAATSRWGRQPSYEDVEKMMRDSTLSRHASLLRYLEQKLALAK 632
                  S V GT  E         R+ + E+  ++  ++   R    L+  E +L++  
Sbjct: 480 VGLSSERSYV-GTFREYQDFHDSHARR-TTENNFRIQLEAKKHRLEKELKDQEWRLSMLT 537

Query: 633 RKLKMADKALAKVQESLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTI 692
           +K++ +++ LAK+  S  P++   D E +T EER + RK+GL M  ++LLGRRG+++G I
Sbjct: 538 KKIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVI 597

Query: 693 ENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNY 752
           E +H HWK++E+VK+I K    +Q+   ++ LE E+GG L+++++     AII+YRGKNY
Sbjct: 598 EEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNY 657

Query: 753 VRPLKLRPQNLLTRRQALARSVELQRREGLKHHILDLQERIELVKSELK 801
            RP K  P NLLT+R+AL RS+E+QRR  +K+   + ++ I+ +K EL+
Sbjct: 658 RRPTKSAPSNLLTKREALQRSIEVQRRGSMKYFAQERKKSIDELKRELR 706
Required for the splicing of group IIA introns in chloroplasts, by regulating the intron folding. Forms splicing particles with RNA. Also involved in chloroplast protein translation.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2 SV=2 Back     alignment and function description
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1 Back     alignment and function description
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana GN=At2g20020 PE=1 SV=2 Back     alignment and function description
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1 SV=1 Back     alignment and function description
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0174900 PE=2 SV=1 Back     alignment and function description
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0495900 PE=2 SV=1 Back     alignment and function description
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0188000 PE=2 SV=2 Back     alignment and function description
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0323300 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query801
359484307884 PREDICTED: chloroplastic group IIA intro 0.957 0.867 0.605 0.0
297738658881 unnamed protein product [Vitis vinifera] 0.947 0.861 0.604 0.0
255546121 930 conserved hypothetical protein [Ricinus 0.971 0.836 0.562 0.0
224091282 977 predicted protein [Populus trichocarpa] 0.822 0.674 0.621 0.0
449452735846 PREDICTED: chloroplastic group IIA intro 0.943 0.893 0.549 0.0
449529423789 PREDICTED: chloroplastic group IIA intro 0.908 0.922 0.571 0.0
356564786794 PREDICTED: chloroplastic group IIA intro 0.696 0.702 0.657 0.0
334187011841 CRS1 / YhbY (CRM) domain-containing prot 0.845 0.804 0.530 0.0
242044486 962 hypothetical protein SORBIDRAFT_02g02294 0.843 0.702 0.529 0.0
115478793 947 Os09g0363100 [Oryza sativa Japonica Grou 0.851 0.720 0.517 0.0
>gi|359484307|ref|XP_002279505.2| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/811 (60%), Positives = 595/811 (73%), Gaps = 44/811 (5%)

Query: 25  KPQSQCSNSFRSIRIGICFSHLTIQAQ-------LGTTRTKRKVKPSFFEQIRHKWSHKV 77
           +PQ+  SN+FR+++     S+ +IQ         L TT+ KRK +PSFFEQIR KWS K+
Sbjct: 17  QPQAHYSNTFRTLKFNCSCSYHSIQVDTQQVKVPLKTTKAKRKPRPSFFEQIRDKWSLKI 76

Query: 78  ISPREKFPWQEEEEEEEEVQNE--PETDVESRVRSEPFSSALPNRFVSAPWIHGTDSKEI 135
            SPREKFPWQE+ EE +       P+++V       P SSA  +RFVS P IH +  +  
Sbjct: 77  NSPREKFPWQEQAEETQNSSGVVVPDSEVIDSSVGSPVSSASESRFVSVPCIHESKPRNP 136

Query: 136 KFDS-PQTKITTKKEDIGDDGLLGSFEKTVVHSAVKEKTVIELDKEGDYNKELKTDEVKI 194
           +  S P+    + ++ +   G  GS      H A  ++      KE D + + + + V++
Sbjct: 137 RLVSEPEISQNSCEQGVNVVGF-GS------HRASVDEWSKSFQKEVDSDGKFEGEGVEV 189

Query: 195 DANPIELSKDRHREVG------SLNQK---------QIKGYHEVDDPSVLPWKRNT---- 235
           D  PI +      E+       SLN+K           +G+        LPWKR      
Sbjct: 190 DEIPIGVLGTEKTEIEMGDANVSLNEKPPGGDEDFGNFEGFSGNSSLIELPWKRREGLQP 249

Query: 236 ---DRRRRSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDE 292
              D   R NT +AE+M+PEHEL+RL+NI+LRMLER KVG+AG+TQ+LVD+IHEKW+ DE
Sbjct: 250 VERDGWGRRNTRMAERMVPEHELRRLKNIALRMLERIKVGAAGVTQSLVDAIHEKWRKDE 309

Query: 293 VVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYKLPCVQSFTKH---- 348
           VVKLKFE P S  MKRTHEILE RTGGLVIWR+GSSVVL+RGMAYKL CVQS+ K     
Sbjct: 310 VVKLKFEGPSSCNMKRTHEILETRTGGLVIWRTGSSVVLYRGMAYKLHCVQSYIKQERDN 369

Query: 349 -NHTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSANNLENLSKEELMDLCELNYLLDELG 407
            N ++ +QD  N +++++G        ES + DSA  L++LS+EELMDL ELN+LLDELG
Sbjct: 370 VNISEYSQDAANVIIQDIGVKDIVKTTESVISDSARYLKDLSEEELMDLSELNHLLDELG 429

Query: 408 PRFKDWPGREPLPVDADLLPPVVPDYKPPLRLLPYGIKPGLRDCETTEFRRLARKTPPHF 467
           PRFKDW GREPLPVDADLLP VV +YKPP RLLPYG++  LR+ E T  RRLAR  PPHF
Sbjct: 430 PRFKDWSGREPLPVDADLLPSVVHEYKPPFRLLPYGMRHCLRNREMTFIRRLARTMPPHF 489

Query: 468 ALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDY 527
           ALGR+RELQGLA AMVKLWE+SAIAKIAIKR V NT N+RMAEELK LTGGTL+ RNKDY
Sbjct: 490 ALGRSRELQGLAMAMVKLWERSAIAKIAIKRGVQNTCNDRMAEELKNLTGGTLVSRNKDY 549

Query: 528 IVFYRGNDFLPPVVTDAVKERSKLTDIRQDEEERARHVASALIELKAKGFVGSLVAGTLA 587
           IVFYRGNDFLPP V +A+KER KL D++QDEEE+ARH ASALI+ KA+   G LVAGTLA
Sbjct: 550 IVFYRGNDFLPPHVMEALKERRKLRDLQQDEEEQARHRASALIDSKARSAKGPLVAGTLA 609

Query: 588 ETLAATSRWGRQPSYEDVEKMMRDSTLSRHASLLRYLEQKLALAKRKLKMADKALAKVQE 647
           ETLAATSRWG +PS EDV KM+RDS L+RHASL+RY+ +KLA AK KLK  +KAL KVQE
Sbjct: 610 ETLAATSRWGSEPSEEDVGKMIRDSALARHASLVRYVGKKLAHAKAKLKKTEKALRKVQE 669

Query: 648 SLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKI 707
            L+PAELP DLET+++EERFL RK+GLSMKP+LLLG RGI+DGT+ENMHLHWKYRELVKI
Sbjct: 670 DLEPAELPMDLETLSDEERFLFRKIGLSMKPFLLLGTRGIFDGTVENMHLHWKYRELVKI 729

Query: 708 IVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQNLLTRR 767
           IVKGK+FAQVK IAISLEAESGGVLVS+D+TPKG AIIVYRGKNY RP  LRP+NLLT+R
Sbjct: 730 IVKGKNFAQVKHIAISLEAESGGVLVSVDRTPKGYAIIVYRGKNYQRPHALRPKNLLTKR 789

Query: 768 QALARSVELQRREGLKHHILDLQERIELVKS 798
           QALARS+ELQR E LKHHI DL+ERI+L+KS
Sbjct: 790 QALARSIELQRHEALKHHISDLEERIKLLKS 820

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738658|emb|CBI27903.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255546121|ref|XP_002514120.1| conserved hypothetical protein [Ricinus communis] gi|223546576|gb|EEF48074.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224091282|ref|XP_002309217.1| predicted protein [Populus trichocarpa] gi|222855193|gb|EEE92740.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449452735|ref|XP_004144114.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449529423|ref|XP_004171699.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|356564786|ref|XP_003550629.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|334187011|ref|NP_194704.2| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana] gi|332660271|gb|AEE85671.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242044486|ref|XP_002460114.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor] gi|241923491|gb|EER96635.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|115478793|ref|NP_001062990.1| Os09g0363100 [Oryza sativa Japonica Group] gi|48716728|dbj|BAD23409.1| putative CRS1 [Oryza sativa Japonica Group] gi|50726191|dbj|BAD33710.1| putative CRS1 [Oryza sativa Japonica Group] gi|113631223|dbj|BAF24904.1| Os09g0363100 [Oryza sativa Japonica Group] gi|125591023|gb|EAZ31373.1| hypothetical protein OsJ_15500 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query801
TAIR|locus:2094558 881 CFM3A "CRM family member 3A" [ 0.699 0.635 0.479 5.2e-136
TAIR|locus:2094997848 EMB1865 "embryo defective 1865 0.692 0.654 0.435 2.8e-114
TAIR|locus:2096662 1011 CFM2 "CRM family member 2" [Ar 0.707 0.560 0.421 2.9e-112
TAIR|locus:2181372720 CRS1 "ortholog of maize chloro 0.498 0.554 0.408 1.7e-84
TAIR|locus:2094438 444 LOH1 "LAG One Homologue 1" [Ar 0.187 0.337 0.374 2.8e-20
TAIR|locus:2056558372 AT2G28480 [Arabidopsis thalian 0.162 0.349 0.430 9.1e-20
TAIR|locus:2123276343 AT4G13070 [Arabidopsis thalian 0.174 0.408 0.386 8.6e-18
TAIR|locus:2091458 491 AT3G27550 [Arabidopsis thalian 0.176 0.287 0.340 1.3e-15
TAIR|locus:2061604701 CAF1 [Arabidopsis thaliana (ta 0.172 0.196 0.286 1.5e-11
TAIR|locus:2028100564 CAF2 [Arabidopsis thaliana (ta 0.173 0.246 0.267 1.3e-08
TAIR|locus:2094558 CFM3A "CRM family member 3A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1332 (473.9 bits), Expect = 5.2e-136, P = 5.2e-136
 Identities = 275/574 (47%), Positives = 378/574 (65%)

Query:   238 RRRSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLK 297
             ++ +   LAE  +PE EL+RLRN++ R   + ++   G+TQ  VD+I EKWK  E+V+LK
Sbjct:   209 KKENRYSLAEMTLPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLK 268

Query:   298 FEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYKLPCVQSFTKHNHTQQTQDV 357
              E   +L M++ HEILE++TGGLVIWRSG+S+ L+RG++Y+LP      K N  ++ +  
Sbjct:   269 IEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELPS----GKWNKQRREETP 324

Query:   358 TNEVMRNVGEHPP---RSAMESYVPDSANNLENLSKEELMDLC-----ELNYLLDELGPR 409
                V+ N  E      +S  + ++P       ++ K++          EL+ LLD+LGPR
Sbjct:   325 PEAVIENHDETTTMVDKSDEKVHLPQLEQETTSVEKKDQTSPVVEYEDELDELLDDLGPR 384

Query:   410 FKDWPGREXXXXXXXXXXXXXXXYKPPLRLLPYGIKPGLRDCETTEFRRLARKTPPHFAL 469
             F DWPG                 Y+PP R+LPYG++  L   E T  RRLAR  PPHFAL
Sbjct:   385 FMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFAL 444

Query:   470 GRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDYIV 529
             GR+R+LQGLA AMV+LWEKS +AKIAIKR V +T +ERMAE+LKKLTGG +L RNKD++V
Sbjct:   445 GRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDFLV 504

Query:   530 FYRGNDFLPPVVTDAVKERSKLTDIRQDEEERARHVASALIELKAKGFVGSLV-AGTLAE 588
             FYRG +FL   V DA+ E+ +     QDEEE+AR   S+ + + +      LV AGTL E
Sbjct:   505 FYRGKNFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPSTEPANKLVSAGTLGE 564

Query:   589 TLAATSRWGRQPSYED-VEKMMRDSTLSRHASLLRYXXXXXXXXXXXXXXXXXXXXXVQE 647
             TL AT +WG+    +D  +++ ++  + RH +L+R                      V+ 
Sbjct:   565 TLDATGKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAKVEV 624

Query:   648 SLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKI 707
              L PAE   D E+IT+EERF+ RK+GL MK +LLLGRRG++DGT+ENMHLHWKYRELVKI
Sbjct:   625 CLKPAEQREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 684

Query:   708 IVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQNLLTRR 767
             IVK K+F  VK++A++LEAESGG+LVS+DK  KG AIIVYRG++Y RP  LRP+NLLT+R
Sbjct:   685 IVKAKTFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKR 744

Query:   768 QALARSVELQRREGLKHHILDLQERIELVKSELK 801
             +ALARS+ELQRREGL  HI  +Q + + +++E++
Sbjct:   745 KALARSIELQRREGLLKHISTMQAKAKQLRAEIE 778
GO:0003723 "RNA binding" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0000373 "Group II intron splicing" evidence=IMP
GO:0048316 "seed development" evidence=IGI
TAIR|locus:2094997 EMB1865 "embryo defective 1865" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096662 CFM2 "CRM family member 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181372 CRS1 "ortholog of maize chloroplast splicing factor CRS1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094438 LOH1 "LAG One Homologue 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056558 AT2G28480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123276 AT4G13070 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091458 AT3G27550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061604 CAF1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028100 CAF2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query801
smart0110384 smart01103, CRS1_YhbY, Escherichia coli YhbY is as 5e-21
pfam0198584 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain 3e-20
pfam0198584 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain 5e-17
smart0110384 smart01103, CRS1_YhbY, Escherichia coli YhbY is as 9e-16
smart0110384 smart01103, CRS1_YhbY, Escherichia coli YhbY is as 2e-14
pfam0198584 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain 8e-13
>gnl|CDD|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly Back     alignment and domain information 
 Score = 87.5 bits (218), Expect = 5e-21
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 661 ITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQI 720
           +T +++  LR +   +KP + +G+ G+ +G +E +    +  EL+K+ V G      K+I
Sbjct: 1   LTGKQKRYLRSLAHHLKPVVQIGKNGLTEGVLEEIDEALEKHELIKVKVLGNDREDRKEI 60

Query: 721 AISLEAESGGVLVSLDKTPKGIAIIVYR 748
           A  L  E+G  LV +     G  I++YR
Sbjct: 61  AEELAEETGAELVQV----IGKTIVLYR 84

GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome. Length = 84
>gnl|CDD|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain Back     alignment and domain information
>gnl|CDD|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain Back     alignment and domain information
>gnl|CDD|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly Back     alignment and domain information
>gnl|CDD|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly Back     alignment and domain information
>gnl|CDD|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 801
KOG1990564 consensus Poly(A)-specific exoribonuclease PARN [R 100.0
PRK1034397 RNA-binding protein YhbY; Provisional 99.92
TIGR0025395 RNA_bind_YhbY putative RNA-binding protein, YhbY f 99.92
PF0198584 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR 99.92
PRK1034397 RNA-binding protein YhbY; Provisional 99.91
TIGR0025395 RNA_bind_YhbY putative RNA-binding protein, YhbY f 99.91
PF0198584 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR 99.9
COG153497 Predicted RNA-binding protein containing KH domain 99.9
COG153497 Predicted RNA-binding protein containing KH domain 99.87
KOG1990564 consensus Poly(A)-specific exoribonuclease PARN [R 98.74
>KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=5.9e-73  Score=637.42  Aligned_cols=517  Identities=46%  Similarity=0.653  Sum_probs=479.4

Q ss_pred             ccccchhhhhcCCCCHHHHHHHHHhhhcCCCeEEeCCCCCCHHHHHHHHHHhhhCCeEEEEecCCChHhHHHHHHHHHHH
Q 003706          237 RRRRSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERR  316 (801)
Q Consensus       237 ~~~~s~psLAe~~LT~kErr~LRklAh~LkpvV~IGK~GVTd~VVeeIh~awk~hELVKVK~~~~~~~dm~~~~e~LEek  316 (801)
                      .+..+ +++|++++.+.++++||..|..+...+  +++|+|+++++.|++.|+.+|+++++|....+.+|.+.+++++..
T Consensus         2 ~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~y~k~k~~~~~~~~~q~~~~~~~~~~~~~~~~~   78 (564)
T KOG1990|consen    2 SNFES-LSLAELTVDEADLRRLRLVATGMTSAP--WKAGSTFDTVEAIYLKWKDNEEVYLKFQFGLCLFMKRSHEALEMS   78 (564)
T ss_pred             Ccccc-hhHHHhhcCHHHHHHHhhhhccceecc--cccccchhhhHHHHHHHHhhhhhheeeccccchhHHHhhhHhhcc
Confidence            34556 999999999999999999999998887  999999999999999999999999999999999999999999999


Q ss_pred             hCC-eEEEEEccEEEEeecCCCCCCCccccccccccccccccccccccccCCCCCCCccccCCCCcccccccccHHHHhh
Q 003706          317 TGG-LVIWRSGSSVVLFRGMAYKLPCVQSFTKHNHTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSANNLENLSKEELMD  395 (801)
Q Consensus       317 TGG-~VVqrIG~viVLYRGknY~~P~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ee~~~  395 (801)
                      ||| .+||+.|.+...|++..|..|..-....                          .+        ....+..  ...
T Consensus        79 ~~~n~~~~~~g~~~s~~~~~~~~~~~~~~~~~--------------------------~~--------~~~~~~~--~~~  122 (564)
T KOG1990|consen   79 TGGNFVVWSRGDSISSPEFLCQRSPVDFVARQ--------------------------QE--------NQAGKWP--SEL  122 (564)
T ss_pred             CCCceeeeecCccccCCccceeecchhhhhhh--------------------------ch--------hhhhhhH--HHH
Confidence            999 9999999999999999999884311000                          00        0000101  224


Q ss_pred             HhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCChHHHHHHHHhhhcCCCeEEecccchh
Q 003706          396 LCELNYLLDELGPRFKDWPGREPLPVDADLLPPVVPDYKPPLRLLPYGIKPGLRDCETTEFRRLARKTPPHFALGRNREL  475 (801)
Q Consensus       396 ~~E~n~lLD~LGPRf~dW~g~~PlPVDaDLLP~vvPgy~~PfRllP~gv~~~Ls~~E~t~LRk~ar~lpph~aLGRn~~~  475 (801)
                      .++.+.++|++||+|.|||+.+|+|+|+||+|++||+|.+|||.+|+|++++|+..|++.+|++|..+||||++|+++.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~i~~~~~p~r~l~~~~~~~l~~~~~~~~r~~~~~~p~~~~~~~~~~~  202 (564)
T KOG1990|consen  123 EKEKNELLDSLGPELSDWGGSDRLSVDADLLPEKIPDYMRPFRTLPVGSPPLLTSIESTLLRRLGYKLPPHFALGRSRKL  202 (564)
T ss_pred             HHHHHHHhhccCcccccCCCCCCccchhhhchhhhhcccChhccCCCCChhhhhhHHHHHHHHhcccccccceehhcccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhCceeEEeecCCCCCCcHHHHHHHH--hhccCcEEEeeeCCeEEEEecCCCCChhhhhHHHHhhhhhh
Q 003706          476 QGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEEL--KKLTGGTLLCRNKDYIVFYRGNDFLPPVVTDAVKERSKLTD  553 (801)
Q Consensus       476 ~gLa~aI~k~wek~~lakI~~K~gv~~T~~~~m~~eL--k~LTGgvLLSRnke~IVlYRGkdf~p~~V~~al~ERe~~~~  553 (801)
                      +|++.+|+.+|++|+++++.|++|++.+..+.||.+|  ..+||++|++||+.++|+|||++|++ .|.++|.++.....
T Consensus       203 ~~~~~~~~~~~~k~~~~k~~~~rg~~~~~~~~~a~~l~~~~~tg~~lv~hN~~~dv~y~~~~Fl~-~lp~~l~~f~~~~~  281 (564)
T KOG1990|consen  203 QGLAVAMVSFWEKHEFAKILIKRGVLETRKERMADELQELLLTGKVLVLHNKLLDVMYRYKNFLS-PLPSTLEEFTDSSS  281 (564)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhcchhhhccchHHHHHHHHhcCCeEEeeccceeeeeehhhccc-ccchhHHHhhhhhh
Confidence            9999999999999999999999999999999999999  99999999999999999999999999 99999999999988


Q ss_pred             hhhhHHHHhhhhhhHHHHhhccccccccccccHHHHHHHhhhccCCCChhHHH-HHHHhhhHHHHHHHHHHHHHHHHHHH
Q 003706          554 IRQDEEERARHVASALIELKAKGFVGSLVAGTLAETLAATSRWGRQPSYEDVE-KMMRDSTLSRHASLLRYLEQKLALAK  632 (801)
Q Consensus       554 ~~q~eEE~aR~~a~~~~~~~~~~~~~~~~aGtl~E~~~a~~~wg~~~~~~~~~-~~~~e~~~~~~~~l~k~~e~kL~~a~  632 (801)
                      ..++.++.+|.....   +    ......+||+.|+..+.++|+......+.. .+..+......+...+.+.++++.+.
T Consensus       282 ~fp~~~~~~~~~~~~---~----~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~  354 (564)
T KOG1990|consen  282 MFPNIEDTKRLAKLS---E----YQKLNLKATLLELARAKAKKEKEIERRSISSRLKLEFEKASSEKLTEAIFHKLEKAK  354 (564)
T ss_pred             hhhhhHHHHHhhccc---c----ccchhhhhhHHHHHHHhcccccCcccccccchhhhhhhccchhhHHHHHHHHHhhhh
Confidence            999999999966611   1    112357899999999999999999877653 67888889999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCCCCCCHHHHHHHHHcccCCCceEeeCCCCCCHHHHHHHHHHHHhcceEEEEEcCC
Q 003706          633 RKLKMADKALAKVQESLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGK  712 (801)
Q Consensus       633 ~K~~rae~~L~K~~~~~~P~e~~~d~E~LT~eERk~LRklGhkLKPvV~IGK~GVtdgVIeeI~~aLk~hELVKVkv~~~  712 (801)
                      .|+..+...|++++.+..|.+..+|++.+|.+++.+++++|.+|++++.+|++|+++|+|.+||.||++||++|++|+..
T Consensus       355 ~~~~~~~~~l~~~~~~~~~~~~~~~~e~~t~ee~~~~~k~g~k~~~~~~~~rrg~f~g~i~n~~l~wk~~e~~k~i~~~~  434 (564)
T KOG1990|consen  355 KKLASANRILAKLEDPKIPAELRYDPESITEEERLMLRKVGLKMKRRLLSGRRGVFDGVIENMHLHWKSRELVKVICKEK  434 (564)
T ss_pred             hhccchhhhhhcccccccccccccchhhcChHHHHHHHHHHHhhccccccCCcccccceeecchhhhhhcccceeeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CH-HHHHHHHHHHHHHhCCEEEEeeecCCCcEEEEEccCCCCCCCcCCccccccHHHHHHHhHHHHHhhhhhHHHHHHHH
Q 003706          713 SF-AQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQNLLTRRQALARSVELQRREGLKHHILDLQE  791 (801)
Q Consensus       713 ~~-~d~keiA~~Le~~SGg~LVqVIk~~iG~tIILYRgkNY~rP~~l~P~nlLtKrkAL~rs~e~qr~esl~~~i~~l~~  791 (801)
                      .. .+++..|..++.++|+++|+++++..|++|+.|||+||++|..+.|.|+|+||+|+.+|+++|+.++++.||..++.
T Consensus       435 ~~~~~~~~~a~~le~esg~~~v~~~~~~~~~ai~~yr~k~y~~p~~l~P~~~l~~~k~~~~~~~~~~~~a~~~~i~~~~~  514 (564)
T KOG1990|consen  435 NLPSQVKQYASALERESGGILVSIDKNPKGYAIIAYRGKNYDRPTSLRPRNLLSRRKALERSLEEQRKEALKSHISDLEQ  514 (564)
T ss_pred             cccHHHHHHHHHHHHHhCCceeeeccCCchhhHHHhhhhhccCCcccCchhhhcccCCccccHHHHHHHHHhhhcchhhh
Confidence            76 99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhh
Q 003706          792 RIELVKSEL  800 (801)
Q Consensus       792 ~i~~l~~~l  800 (801)
                      ++++++.++
T Consensus       515 ~~e~~~~~~  523 (564)
T KOG1990|consen  515 EIEQLQASV  523 (564)
T ss_pred             hHHHhhcch
Confidence            999998765

>PRK10343 RNA-binding protein YhbY; Provisional Back     alignment and domain information
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family Back     alignment and domain information
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain Back     alignment and domain information
>PRK10343 RNA-binding protein YhbY; Provisional Back     alignment and domain information
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family Back     alignment and domain information
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain Back     alignment and domain information
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query801
1jo0_A98 Hypothetical protein HI1333; structural genomics, 2e-12
1jo0_A98 Hypothetical protein HI1333; structural genomics, 5e-08
1rq8_A104 Conserved hypothetical protein; structural genomic 1e-11
1rq8_A104 Conserved hypothetical protein; structural genomic 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A Length = 98 Back     alignment and structure
 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 18/89 (20%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 660 TITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQ 719
           T++ +++  L+ +   + P ++LG  G+ +G +  +     + EL+K+ V G      + 
Sbjct: 2   TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQL 61

Query: 720 IAISLEAESGGVLVSLDKTPKGIAIIVYR 748
           I  ++  E+    V       G  +++YR
Sbjct: 62  IINAIVRETKAAQVQT----IGHILVLYR 86
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A Length = 98 Back     alignment and structure
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1 Length = 104 Back     alignment and structure
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1 Length = 104 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 801
d1rq8a_96 d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy 1e-20
d1rq8a_96 d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy 1e-16
d1rq8a_96 d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy 8e-14
d1jo0a_97 d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i 1e-20
d1jo0a_97 d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i 4e-14
d1jo0a_97 d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i 2e-13
>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: YhbY-like
family: YhbY-like
domain: Hypothetical protein SAV1595
species: Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]

 Score = 85.1 bits (211), Expect = 1e-20
 Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 661 ITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQI 720
           +T +++  LR +  ++ P   +G+ GI +  I+ +    + REL+K+ V   +F   K++
Sbjct: 2   LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKEL 61

Query: 721 AISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKL 758
           A +L   +   LV +     G  I++YR     + ++L
Sbjct: 62  AETLSEATRSELVQV----IGSMIVIYRESKENKEIEL 95
>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96 Back     information, alignment and structure
>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96 Back     information, alignment and structure
>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97 Back     information, alignment and structure
>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97 Back     information, alignment and structure
>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query801
d1jo0a_97 YhbY homologue HI1333 {Haemophilus influenzae [Tax 99.9
d1rq8a_96 Hypothetical protein SAV1595 {Staphylococcus aureu 99.9
d1rq8a_96 Hypothetical protein SAV1595 {Staphylococcus aureu 99.9
d1jo0a_97 YhbY homologue HI1333 {Haemophilus influenzae [Tax 99.9
>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: YhbY-like
family: YhbY-like
domain: YhbY homologue HI1333
species: Haemophilus influenzae [TaxId: 727]

Probab=99.90  E-value=1.6e-23  Score=174.82  Aligned_cols=96  Identities=20%  Similarity=0.382  Sum_probs=60.8

Q ss_pred             CCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEEECC
Q ss_conf             99999999999701699961760778889889999999987166288997489989799999999988399899733169
Q 003706          660 TITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTP  739 (801)
Q Consensus       660 ~LT~eERk~LRKlGlklKpvV~IGK~GVtdgVIeeIh~alk~hELVKIkv~~~~~~d~keiA~~Le~~TGgiLVqVik~~  739 (801)
                      +||++||++||++||+|+|+|.||++|+|++|+.+|+.||+.||||||+|.+++.++++++++.|++.|||.+|++|   
T Consensus         2 tLt~kqr~~LR~~ah~lkp~v~IGk~Glt~~vi~ei~~al~~~ELIKvki~~~~~~~~~~~~~~l~~~t~~~vV~~i---   78 (97)
T d1jo0a_           2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTI---   78 (97)
T ss_dssp             CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEE---
T ss_pred             CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEE---
T ss_conf             99999999999976689997998899878999999999997597389997589989999999999998499999998---


Q ss_pred             CCCEEEEECCCCCCCCCCCCCC
Q ss_conf             7829999806899999757865
Q 003706          740 KGIAIIVYRGKNYVRPLKLRPQ  761 (801)
Q Consensus       740 iG~tIILYRGKNY~rP~~l~P~  761 (801)
                       |+++||||++.  .|.+.+|+
T Consensus        79 -G~~~ilYR~~~--~~~i~lPk   97 (97)
T d1jo0a_          79 -GHILVLYRPSE--EAKIQLPR   97 (97)
T ss_dssp             -TTEEEEECCCS--SCCBCCCC
T ss_pred             -CCEEEEECCCC--CCCCCCCC
T ss_conf             -99999985899--87789999
>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Back     information, alignment and structure
>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Back     information, alignment and structure
>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure