BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003707
(801 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NUQ1|RINT1_HUMAN RAD50-interacting protein 1 OS=Homo sapiens GN=RINT1 PE=1 SV=1
Length = 792
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 134/588 (22%), Positives = 248/588 (42%), Gaps = 104/588 (17%)
Query: 207 MLRPQAIADHRALLSSLGWP---PPLS-ILASSNPETRASSEVSNPLFTMRGDLKHQYCE 262
+L+ + +D +L+ L WP PP S + S P + + E+ + L T+
Sbjct: 223 ILKDKLTSDFEEILAQLHWPFIAPPQSQTVGLSRPAS--APEIYSYLETL---------- 270
Query: 263 NFLALCRLQELQRQ----RKSRQLEGHNRELALHQPLWAIEELVNPIAVASQHHF----- 313
C+L +LQ + +QL A + I+ ++ P+ ++HF
Sbjct: 271 ----FCQLLKLQTSDELLTEPKQLPEKYSLPASPSVILPIQVMLTPLQKRFRYHFRGNRQ 326
Query: 314 SKWTDKPEFIFTLVYKITRDYVDSMDELLQPLVDEALLVG--YSCREEWISAMVTALLTY 371
+ KPE+ V ++ + +DE +QP++D+ VG + R E+ ++ +L
Sbjct: 327 TNVLSKPEWYLAQVLMWIGNHTEFLDEKIQPILDK---VGSLVNARLEFSRGLMMLVLEK 383
Query: 372 LAKEIFP--VYVDQLDEESISGVQSQARISWLHLVDLMISFDKRIKSLVEQSGILFS--- 426
LA +I P +Y D L + HLVD ++ F++ + S+ G S
Sbjct: 384 LATDI-PCLLYDDNL---------------FCHLVDEVLLFERELHSVHGYPGTFASCMH 427
Query: 427 -LQEDGNLQKISSLSVFCDRPDWLDIWAQIELADTLENLKHDVDDERNWKMKVQKGALLF 485
L E+ Q+ W +E L+ + + E W V + +
Sbjct: 428 ILSEETCFQR----------------WLTVERKFALQKMDSMLSSEAAW---VSQYKDIT 468
Query: 486 GSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPVIQKFLDCVLLRCQEA 545
++ + P + F+ L + DR ++LPT S + +FL L + +D +R
Sbjct: 469 DVDEMKVPDCAETFMTLLLVITDRYKNLPTASRKLQFLELQ-----KDLVDDFRIR---- 519
Query: 546 EGLTALTDEDGL----LKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLETSLSDN 601
LT + E+ + +NA +Y +VL +W ++VFFL++ Q LE +N
Sbjct: 520 --LTQVMKEETRASLGFRYCAILNAVNYISTVLADWADNVFFLQL---QQAALEVFAENN 574
Query: 602 SRSEWPVG---GSRSGIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQW-- 656
+ S+ +G S +FD+ I LE + + + + + R ++ Y K R W
Sbjct: 575 TLSKLQLGQLASMESSVFDDMINLLERLKHDMLTRQVDHVFREVKDAAKLYKKER--WLS 632
Query: 657 --QEKSEENWSVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILM 714
+ + S+S L L+ + +E L F + W+ L +D +++ I++
Sbjct: 633 LPSQSEQAVMSLSSSACPLLLTLRDHLLQLEQQLCFSLFKIFWQMLVEKLDVYIYQEIIL 692
Query: 715 SNAKFYDGGVVRFGCDM-EVLFGVFRAWCLRPEGFFPKTSEGLKLLKM 761
+N F +GG + DM LF +F +C RPE +F E +L +
Sbjct: 693 AN-HFNEGGAAQLQFDMTRNLFPLFSHYCKRPENYFKHIKEACIVLNL 739
>sp|Q8BZ36|RINT1_MOUSE RAD50-interacting protein 1 OS=Mus musculus GN=Rint1 PE=2 SV=2
Length = 792
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 115/485 (23%), Positives = 210/485 (43%), Gaps = 72/485 (14%)
Query: 298 IEELVNPIAVASQHHF--SKWTD---KPEFIFTLVYKITRDYVDSMDELLQPLVDEALLV 352
I+ ++ P+ ++HF S+ T+ KPE+ V ++ +DE +QP++D+ V
Sbjct: 306 IQVMLAPLQKRFRYHFRGSRQTNVMSKPEWYLAQVLMWIGNHTQFLDEKIQPILDK---V 362
Query: 353 G--YSCREEWISAMVTALLTYLAKEIFP--VYVDQLDEESISGVQSQARISWLHLVDLMI 408
G + R E+ +V +L LA +I P +Y D L + HLVD ++
Sbjct: 363 GSAVNARLEFSRGLVMLILEKLASDI-PCLLYDDSL---------------FCHLVDEVL 406
Query: 409 SFDKRIKSLVEQSGILFSLQEDGNLQKISSLSVFCDRPDWLDIWAQIELADTLENLKHDV 468
F++ + ++ G +S W +E L+ + +
Sbjct: 407 LFERELHTV------------HGYPSTFASCMHILSEETCFQRWLTVERKFALQKMDSML 454
Query: 469 DDERNWKMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGA 528
E W V + + ++ + P + F+ L + DR ++LPT S + +FL L
Sbjct: 455 SSEAAW---VSQYKDISDVDEMKVPDCAEVFMTLLLVITDRYKNLPTASRKLQFLELQ-- 509
Query: 529 PVIQKFLDCVLLRCQEAEGLTALTDED--GLLKVANC--VNAAHYFESVLREWCEDVFFL 584
+ +D +R LT + E+ L C +NA +Y +VL +W ++VFFL
Sbjct: 510 ---KDLVDDFRIR------LTQVMKEETRAALGFRYCAILNAVNYISAVLADWADNVFFL 560
Query: 585 EMALDQDNQLETSLSDNSRSEWPVG---GSRSGIFDEEIKKLEEFRTEWVEKISVVILRG 641
++ Q LE +N S+ +G S +FD+ I LE + + + + + R
Sbjct: 561 QL---QQAALEVFAENNVLSKLQLGQLASMESSVFDDMINLLERLKLDMLTRQVDHVFRE 617
Query: 642 FDALSRDYVKNRRQW----QEKSEENWSVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVW 697
++ Y K R W + + S+S L L+ ++ +E L F + W
Sbjct: 618 VKDSAKLYKKER--WLSLPSQSEQAVMSLSSSACPLLLTLRDRLLQLEQQLCFSLFRIFW 675
Query: 698 RSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDM-EVLFGVFRAWCLRPEGFFPKTSEGL 756
+ LA +D +++ I+++N F +GG + DM LF +F +C RPE +F E
Sbjct: 676 QMLAEKLDLYIYQEIILAN-HFNEGGAAQLQFDMTRNLFPLFSHYCKRPENYFKHVKEAC 734
Query: 757 KLLKM 761
+L +
Sbjct: 735 IILNL 739
>sp|Q9VS46|RINT1_DROME RINT1-like protein OS=Drosophila melanogaster GN=CG8605 PE=2 SV=2
Length = 724
Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 108/478 (22%), Positives = 193/478 (40%), Gaps = 70/478 (14%)
Query: 293 QPL-WAIEELVNPIAVASQHHFS-----KWTDKPEFIFTLVYKITRDYVDSMDELLQPLV 346
QP+ ++ L+ P Q HF+ DKPE+ +T + ++ + + QP
Sbjct: 253 QPINRVVQLLLAPYRQRFQFHFTGTRQTNRLDKPEWFYTQILNWGKETHFFVGKTFQPAA 312
Query: 347 DEALLVGYSCREEWISAMVTALLTYLAKEIFPVYVDQLDEESISGVQSQARISWLHLVDL 406
+A + Y+ R E+I +V LA E V ++Q+ +Q +I + HL+D
Sbjct: 313 IKAGKLDYNLRLEFIRGLVQ-----LAIEKLAVDIEQI---------AQDQILFAHLLDE 358
Query: 407 MISFDKRIKSLVEQSGILFSLQEDGNLQKISSLSVFCDRPDWLDIWAQIELADTLENLKH 466
++F+ ++ E G S S++SV +P +L W +E E +
Sbjct: 359 TLAFESELR---ETFGYPASFP--------SAISVIT-QPMYLLRWISLEERFCAEKMDD 406
Query: 467 DVDDERNWKMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLA 526
+ E +++ + + D + P + F++ L ++ DR L + +FL L
Sbjct: 407 ILQAETPFQL-IDPNSF---ENDLKIPKCADQFMRLLDAIKDRYYGLIQPGHQLQFLHLQ 462
Query: 527 GAPVIQKFLDCVLLRCQEAEGLTALTDEDGLLKVANCVNAAHYFESVLREWCEDVFFLEM 586
+ +D R + G + +NA +Y VLREW E+V +L
Sbjct: 463 -----LELIDSFRQRLVQLHS-------SGAVPSIPILNAINYLVMVLREWGENVHYL-- 508
Query: 587 ALDQDNQLETSLSDNSRSEWPVGGSRSGIFDEEIKKLEEFRTEWVEKISVVILRGFDALS 646
L +L+ P + +F+ + +LE + + + ++ A S
Sbjct: 509 ------HLHAALAG------PNATEINSVFEHAVAELEHWARQLMRNLATKATNEMKAKS 556
Query: 647 RDYVKNRRQWQEKSEENWSVSEMLVGA----LDYLQGKMSIIEGSLNAMDFIMVWRSLAT 702
Y R W E+N +L + L + +E L+A F R +A
Sbjct: 557 MSY--RRDAWPTMPEQNSREPFILSPSGGEMFQVLVTLLHNLERELSANLFTQTLRLIAH 614
Query: 703 GVDRLLFRGILMSNAKFYDGGVVRFGCDM-EVLFGVFRAWCLRPEGFFPKTSEGLKLL 759
+D + ++M N KF G +F DM LF +F + RPE F +T + KLL
Sbjct: 615 QIDDFMLESMVM-NTKFSAAGAAQFNYDMTRNLFALFGQYTRRPELLFKRTHDACKLL 671
>sp|C7R400|ARC_JONDD Proteasome-associated ATPase OS=Jonesia denitrificans (strain ATCC
14870 / DSM 20603 / CIP 55134) GN=arc PE=3 SV=1
Length = 550
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 472 RNWKMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPVI 531
R +K KG LL+G ++ A L+ V + + PT R FL + G ++
Sbjct: 216 REHGLKAPKGILLYGPPGCGKTLIAKAVAHSLAQTVGQGNNTPTDDTRGYFLNIKGPELL 275
Query: 532 QKFL 535
K++
Sbjct: 276 NKYV 279
>sp|C6WIC8|ARC_ACTMD Proteasome-associated ATPase OS=Actinosynnema mirum (strain ATCC
29888 / DSM 43827 / NBRC 14064 / IMRU 3971) GN=arc PE=3
SV=1
Length = 599
Score = 33.9 bits (76), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 472 RNWKMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPVI 531
R +K++ KG LL+G ++ A L+ V + R +S FL + G ++
Sbjct: 269 REYKLRPPKGVLLYGPPGCGKTLIAKAVANSLAKQVSKARGEDHKDAKSFFLNIKGPELL 328
Query: 532 QKFL 535
KF+
Sbjct: 329 NKFV 332
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 276,839,481
Number of Sequences: 539616
Number of extensions: 11149061
Number of successful extensions: 32116
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 32091
Number of HSP's gapped (non-prelim): 40
length of query: 801
length of database: 191,569,459
effective HSP length: 126
effective length of query: 675
effective length of database: 123,577,843
effective search space: 83415044025
effective search space used: 83415044025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)