Query 003707
Match_columns 801
No_of_seqs 162 out of 208
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:30:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2218 ER to golgi transport 100.0 6E-102 1E-106 874.1 56.0 724 6-800 1-737 (737)
2 PF04437 RINT1_TIP1: RINT-1 / 100.0 1E-100 3E-105 883.2 33.1 469 296-798 1-494 (494)
3 KOG2180 Late Golgi protein sor 99.0 3E-05 6.6E-10 89.6 47.2 643 14-783 18-722 (793)
4 PF04100 Vps53_N: Vps53-like, 98.7 1.8E-05 3.8E-10 89.1 31.0 363 17-472 6-382 (383)
5 PF07393 Sec10: Exocyst comple 98.1 0.0002 4.3E-09 87.4 22.8 276 488-799 407-701 (710)
6 PF10191 COG7: Golgi complex c 98.1 0.057 1.2E-06 66.4 52.4 644 14-771 9-751 (766)
7 KOG0412 Golgi transport comple 98.1 0.049 1.1E-06 63.9 50.2 304 447-799 426-770 (773)
8 PF04091 Sec15: Exocyst comple 97.4 0.0019 4.1E-08 70.9 14.2 211 529-764 64-282 (311)
9 PF06046 Sec6: Exocyst complex 96.9 0.04 8.6E-07 65.6 19.1 427 297-796 82-543 (566)
10 KOG1328 Synaptic vesicle prote 96.4 3.1 6.6E-05 49.5 32.2 283 447-768 617-916 (1103)
11 PF14923 CCDC142: Coiled-coil 96.1 0.12 2.5E-06 59.0 15.0 145 616-760 222-378 (450)
12 PF06248 Zw10: Centromere/kine 95.2 10 0.00022 45.7 41.9 444 108-648 81-578 (593)
13 KOG3745 Exocyst subunit - Sec1 94.9 0.36 7.9E-06 57.6 13.9 176 613-799 563-748 (763)
14 KOG3691 Exocyst complex subuni 92.0 4.7 0.0001 49.1 16.4 154 611-771 770-929 (982)
15 KOG2347 Sec5 subunit of exocys 90.5 1.3 2.8E-05 53.7 9.9 136 618-756 755-894 (934)
16 PF14906 DUF4495: Domain of un 86.6 55 0.0012 35.9 20.4 182 522-739 3-186 (321)
17 PF01843 DIL: DIL domain; Int 82.9 2.6 5.7E-05 38.5 5.5 95 696-796 2-98 (105)
18 KOG0994 Extracellular matrix g 80.6 1E+02 0.0023 39.2 18.8 92 26-121 1536-1633(1758)
19 PF10474 DUF2451: Protein of u 80.0 85 0.0019 33.2 18.9 148 614-766 42-195 (234)
20 PF04124 Dor1: Dor1-like famil 71.4 1.3E+02 0.0028 33.5 15.8 61 30-90 8-68 (338)
21 KOG2163 Centromere/kinetochore 71.0 2.4E+02 0.0051 33.9 24.7 325 402-795 351-702 (719)
22 KOG1892 Actin filament-binding 64.7 92 0.002 38.9 13.1 125 624-764 651-786 (1629)
23 PF13747 DUF4164: Domain of un 59.0 40 0.00087 30.2 7.0 63 19-81 22-84 (89)
24 KOG0994 Extracellular matrix g 58.7 3E+02 0.0065 35.5 16.1 11 214-224 1622-1632(1758)
25 COG0497 RecN ATPase involved i 55.3 1.9E+02 0.0042 34.5 13.7 35 14-48 99-133 (557)
26 PF00032 Cytochrom_B_C: Cytoch 52.1 8.4 0.00018 35.1 1.6 16 319-334 12-27 (102)
27 PF10498 IFT57: Intra-flagella 50.3 93 0.002 35.1 9.8 99 29-129 252-354 (359)
28 PF03904 DUF334: Domain of unk 50.0 1E+02 0.0022 32.3 9.1 64 23-88 46-110 (230)
29 PF07106 TBPIP: Tat binding pr 49.6 1.5E+02 0.0032 29.4 10.3 38 27-64 70-107 (169)
30 PRK14127 cell division protein 49.6 26 0.00057 32.6 4.4 42 16-60 27-68 (109)
31 PRK13676 hypothetical protein; 49.5 1.5E+02 0.0032 27.5 9.6 70 70-146 35-104 (114)
32 PF06133 DUF964: Protein of un 48.8 1.4E+02 0.0029 27.1 9.2 74 70-150 32-105 (108)
33 PF07926 TPR_MLP1_2: TPR/MLP1/ 45.2 99 0.0021 29.6 7.9 62 28-89 58-119 (132)
34 cd07665 BAR_SNX1 The Bin/Amphi 42.4 4.4E+02 0.0096 27.9 17.7 51 35-89 21-71 (234)
35 PF04912 Dynamitin: Dynamitin 39.9 6.1E+02 0.013 28.8 15.9 37 165-201 330-366 (388)
36 COG5173 SEC6 Exocyst complex s 38.7 3.4E+02 0.0074 32.2 11.9 129 621-760 534-666 (742)
37 PF14712 Snapin_Pallidin: Snap 38.5 2E+02 0.0043 25.4 8.3 36 29-64 14-49 (92)
38 PF05546 She9_MDM33: She9 / Md 38.3 3.8E+02 0.0083 27.9 11.1 52 37-88 33-84 (207)
39 PRK09039 hypothetical protein; 38.0 3.8E+02 0.0083 30.0 12.3 23 39-61 77-99 (343)
40 PF09726 Macoilin: Transmembra 34.0 9.4E+02 0.02 29.8 15.5 19 38-56 497-515 (697)
41 PRK10869 recombination and rep 33.7 9E+02 0.02 29.0 16.0 33 14-46 100-132 (553)
42 TIGR02132 phaR_Bmeg polyhydrox 33.4 1.8E+02 0.0039 29.4 7.6 38 23-60 66-103 (189)
43 COG0497 RecN ATPase involved i 33.0 6.3E+02 0.014 30.3 13.3 20 211-230 375-394 (557)
44 KOG4182 Uncharacterized conser 33.0 5.7E+02 0.012 29.9 12.2 75 693-771 748-823 (828)
45 KOG1011 Neurotransmitter relea 32.3 9.9E+02 0.022 29.0 15.7 51 317-367 736-789 (1283)
46 PRK06568 F0F1 ATP synthase sub 30.9 5E+02 0.011 25.7 10.3 50 17-66 29-79 (154)
47 KOG0972 Huntingtin interacting 30.0 4.6E+02 0.01 28.6 10.4 63 15-78 244-308 (384)
48 PRK04863 mukB cell division pr 29.7 9.8E+02 0.021 32.4 15.6 22 108-129 892-913 (1486)
49 PRK10884 SH3 domain-containing 29.5 4.4E+02 0.0095 27.4 10.1 29 44-72 94-122 (206)
50 cd07664 BAR_SNX2 The Bin/Amphi 29.4 7E+02 0.015 26.4 17.8 52 34-89 20-71 (234)
51 TIGR02680 conserved hypothetic 29.1 1.6E+03 0.034 30.3 18.4 16 128-143 877-892 (1353)
52 PF12128 DUF3584: Protein of u 29.1 1.4E+03 0.03 30.2 17.0 24 108-131 318-341 (1201)
53 PF10805 DUF2730: Protein of u 28.9 2.4E+02 0.0053 25.9 7.4 38 18-55 24-61 (106)
54 PF12325 TMF_TATA_bd: TATA ele 28.2 5.2E+02 0.011 24.5 11.5 35 110-144 68-107 (120)
55 PF06248 Zw10: Centromere/kine 27.3 6.8E+02 0.015 30.1 12.9 68 665-735 451-522 (593)
56 PF10392 COG5: Golgi transport 26.6 5.6E+02 0.012 24.3 11.5 55 35-89 32-86 (132)
57 PF10805 DUF2730: Protein of u 26.1 1.4E+02 0.0031 27.5 5.3 35 24-58 60-94 (106)
58 PF08506 Cse1: Cse1; InterPro 25.6 1E+03 0.022 27.0 14.1 73 506-579 1-85 (370)
59 KOG0963 Transcription factor/C 25.4 3E+02 0.0065 33.1 8.8 34 29-62 242-275 (629)
60 smart00502 BBC B-Box C-termina 24.3 5.3E+02 0.012 23.3 11.1 26 108-133 77-102 (127)
61 PRK10884 SH3 domain-containing 24.0 8.3E+02 0.018 25.4 11.0 33 34-66 91-123 (206)
62 PRK05759 F0F1 ATP synthase sub 23.9 3E+02 0.0066 26.6 7.6 45 17-61 29-74 (156)
63 TIGR00634 recN DNA repair prot 23.7 1.1E+03 0.025 28.0 13.8 149 15-227 247-395 (563)
64 KOG0804 Cytoplasmic Zn-finger 23.4 9.7E+02 0.021 27.9 12.0 27 103-129 403-429 (493)
65 PRK06569 F0F1 ATP synthase sub 23.2 3.3E+02 0.0072 27.0 7.5 47 16-62 34-81 (155)
66 PF15372 DUF4600: Domain of un 23.2 3.2E+02 0.007 26.3 7.1 49 32-80 54-102 (129)
67 PRK13476 cytochrome b6-f compl 22.7 46 0.00099 33.1 1.4 15 319-333 76-90 (160)
68 KOG0976 Rho/Rac1-interacting s 22.5 1.1E+03 0.024 29.4 12.7 130 31-209 346-480 (1265)
69 PRK10869 recombination and rep 22.2 1.2E+03 0.026 27.9 13.6 19 211-229 374-392 (553)
70 PRK04863 mukB cell division pr 22.1 2.1E+03 0.046 29.4 16.7 104 29-135 978-1085(1486)
71 PF05597 Phasin: Poly(hydroxya 21.7 4.2E+02 0.0092 25.5 7.7 14 110-123 109-122 (132)
72 PHA03332 membrane glycoprotein 21.5 9.2E+02 0.02 31.1 12.0 61 18-78 880-940 (1328)
73 PF06148 COG2: COG (conserved 21.4 89 0.0019 29.8 3.1 113 17-143 15-130 (133)
74 PRK11519 tyrosine kinase; Prov 21.2 4.6E+02 0.01 32.5 10.0 46 17-64 250-295 (719)
75 PF05600 DUF773: Protein of un 21.1 4.9E+02 0.011 30.9 9.8 26 41-66 129-154 (507)
76 TIGR02449 conserved hypothetic 21.1 5.1E+02 0.011 21.9 7.7 21 31-51 2-22 (65)
77 PRK13454 F0F1 ATP synthase sub 20.9 4.9E+02 0.011 26.3 8.5 44 16-59 55-99 (181)
78 PF10475 DUF2450: Protein of u 20.8 1.1E+03 0.023 25.6 17.9 152 39-221 31-193 (291)
79 cd00290 cytochrome_b_C Cytochr 20.7 54 0.0012 32.1 1.5 15 319-333 63-77 (147)
80 PF06160 EzrA: Septation ring 20.4 1.5E+03 0.033 27.1 14.1 30 109-138 170-199 (560)
81 COG3679 Regulatory protein inv 20.2 7.5E+02 0.016 23.5 9.3 72 70-148 35-106 (118)
82 PRK07353 F0F1 ATP synthase sub 20.2 6.6E+02 0.014 23.8 9.0 45 17-61 30-75 (140)
No 1
>KOG2218 consensus ER to golgi transport protein/RAD50-interacting protein 1 [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.4e-102 Score=874.08 Aligned_cols=724 Identities=30% Similarity=0.469 Sum_probs=610.9
Q ss_pred CCCCCCCCCchhhhhhhhccCCHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHH
Q 003707 6 TLPPVSAISSTTLSFLNDNLTNKEYHARAA-RLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKL 84 (801)
Q Consensus 6 ~~~~~~~~~~~~~~~ld~~~~s~~dl~~~~-~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 84 (801)
++|.+++.+.++..|+|++|....|+.... .++++++.+|++|.+.|.+++.++..-..+|++.++.+......++..+
T Consensus 1 ~~~~~s~~~~~~~~~~~~~~~~~~D~L~r~~~~~s~l~~~~seL~q~l~~L~~~~~~n~~~~~s~~~~~q~~~~ev~~~l 80 (737)
T KOG2218|consen 1 MLAELSEMPLRILAFLDGEFCDGIDLLLRASDLVSELEKELSELNQRLQNLKERDPSNLTTYLSAEQGAQQDIEEVGAEL 80 (737)
T ss_pred CCCccccchHHHHHhccccccccHHHHhccccchhhHHHHHHHHHHHHhhhcccCcccchhHhhHHHHhhhhHHHHhhhH
Confidence 389999999999999999999887776554 4999999999999999999999999988889988888887777777666
Q ss_pred hhhhhhccCCCCCCCc--chhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHhhhcccccccCCCCCC
Q 003707 85 TDLASASRSPSSVSDG--GVRAKQILGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAVSSAMNNNRRSNSTQDS 162 (801)
Q Consensus 85 ~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~l~~~l~~le~~~~Y~~~~~~~e~l~~d~e~~~~s~~~~~~~~~~~~~~ 162 (801)
+.|.... +...++. .+..++...+.+ +..+++.++|..+.|+..+++++.+++++++++....+++. +
T Consensus 81 e~L~~l~--~~~~~~~~~~e~v~~~~~e~~-~~~~~V~~le~~k~yl~~~~~l~t~~~~l~nsi~~~~~k~~---~---- 150 (737)
T KOG2218|consen 81 EKLQRLE--RALYGDLQLEEQVLKVAKEIL-QMRDEVLKLEVFKQYLGTLLELDTLLFSLENSIFLSASKAL---F---- 150 (737)
T ss_pred HHHHHHH--HHhhHHHHHHHHHhhccchhh-HHHHHHHHHHHHHHHHHHHhccchhHhHHHHHhhcccchhh---h----
Confidence 6555541 0011111 112222245777 88999999999999999999999999999997655543221 1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccCCCccccCc
Q 003707 163 EDMRLLAIKALKQAEDILTSVTKTRPQWARLVAAVDHRVDRALAMLRPQAIADHRALLSSLGWPPPLSILASSNPETRAS 242 (801)
Q Consensus 163 ~~~al~a~~~L~~~~~~~~~~~~~~~~~~~Lv~~v~~~v~~~~~~Lr~~l~~~l~~~L~~l~WP~~~~~~~~~~~~~~~~ 242 (801)
-..+..+..++++++++ |...++-|..|+..+++|+++||+.|+++.+++++++|.+++|| ++++++.+.+
T Consensus 151 -~t~~s~~eE~n~iee~~--v~~~h~i~~~l~~s~~~r~~k~~~~l~~~~~~~feaiLssl~Wp--~a~~~s~~~~---- 221 (737)
T KOG2218|consen 151 -STSFSLFEEINNIEEIL--VARLHLIWRKLFRSFDRRTVKWHKLLRKQKSSDFEAILSSLRWP--LATLMSESVG---- 221 (737)
T ss_pred -hhHHhhhhhcccchHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CcchhhhccC----
Confidence 22334566688888754 88889999999999999999999999999999999999999999 5554432111
Q ss_pred cccCCcccccccchHHHHHHHHHHHhhhhhhhhhhhhhhhccCccccccCCchhhHHHhHhhHHHhcccccc-----ccc
Q 003707 243 SEVSNPLFTMRGDLKHQYCENFLALCRLQELQRQRKSRQLEGHNRELALHQPLWAIEELVNPIAVASQHHFS-----KWT 317 (801)
Q Consensus 243 ~~~~~pl~~~~~~~~~~~~~~f~~L~~LQ~~~~~~~~~~~~~~~~~~~~~~~Lw~i~~Lv~P~~~RF~YHF~-----Nrl 317 (801)
+..||+.| ....|+..|..|-+.+.....|.+-+ +. .+..+|++||+++|++|+.+||+|||+ ||+
T Consensus 222 --l~s~l~~~---~k~~f~~sfl~l~~~~~~~~~r~~l~---~~-~es~~~~lw~~q~L~~P~~~rF~YHF~~~rqTn~l 292 (737)
T KOG2218|consen 222 --LKSPLREM---LKSLFCQSFLFLSEETLQGESRRPLQ---YF-KESVEPVLWATQVLLTPYAKRFRYHFMSDRQTNRL 292 (737)
T ss_pred --ccchhHHH---HHHHHHHHHHhhhhhcccchhhchhh---hc-CCCCCchhHHHHHHHHHHHhhhheeeccccccccc
Confidence 12366555 78899999999943332222222221 11 234489999999999999999999999 999
Q ss_pred cCccchHHHHHHHHHhhHHhHHhhhHHHHHhccccccchHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccchhh
Q 003707 318 DKPEFIFTLVYKITRDYVDSMDELLQPLVDEALLVGYSCREEWISAMVTALLTYLAKEIFPVYVDQLDEESISGVQSQAR 397 (801)
Q Consensus 318 dKPEw~f~~vl~~i~~~~~fl~~~lqp~l~~~~~~~~~~~~efi~~ll~~l~~kL~~~i~p~l~~~~~d~~~~~~~~~~~ 397 (801)
+||||||++|++|+++|..++++.+||++|++|+.+++++++||++|++++.+|+..+| +.+. +..
T Consensus 293 sKPEwff~~vlk~~ren~~~~d~~~qp~~D~agl~~~~~r~efi~~lvql~kekl~~~I-~q~d-------------~k~ 358 (737)
T KOG2218|consen 293 SKPEWFFEFVLKVLRENRESFDELFQPLVDKAGLLSVNARLEFINGLVQLAKEKLAVDI-SQLD-------------QKR 358 (737)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCHHHHHHHHHHHHHHHHhhhhh-hhHH-------------hhh
Confidence 99999999999999999999999999999999999999999999999999999999988 5442 234
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCcccccccCCccCcccceEeecCCchHHHHHHHHHHHHHHHHHHHhhccCCCcccc
Q 003707 398 ISWLHLVDLMISFDKRIKSLVEQSGILFSLQEDGNLQKISSLSVFCDRPDWLDIWAQIELADTLENLKHDVDDERNWKMK 477 (801)
Q Consensus 398 sl~~HlIdE~l~FD~~Lr~~~~y~~~~~~~~~~~~w~gls~~~vl~~~~~~f~~Wl~~E~~~A~~r~~~Ii~s~daw~i~ 477 (801)
.+|+|||||+++||++|++.|+|||. +++++++|| +|+|+++|+++|+++|..+++.|++++.||.+.
T Consensus 359 ~l~~HLvdq~l~Fdkrl~s~f~Y~~t-----------~~s~i~~l~-~~~~~~~W~~iEle~a~~k~k~~~~n~~aW~~~ 426 (737)
T KOG2218|consen 359 NLFLHLVDQVLAFDKRLQSSFGYPGT-----------FLSLISLLS-QPMWLKKWLKIELEEALRKFKMIIKNEVAWVDG 426 (737)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcc-----------hhhhhhHhc-ChHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh
Confidence 79999999999999999999999875 237889999 799999999999999999999999999999998
Q ss_pred cccccccCCCCCCCCChhHHHHHHHHHHHHhhccCCCChhhHHHHHHHhchHHHHHHHHHHHHHHHhhhhhhcccCchhH
Q 003707 478 VQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPVIQKFLDCVLLRCQEAEGLTALTDEDGL 557 (801)
Q Consensus 478 ~d~~~~~~~~~~~K~p~~A~~~~~LL~~iteRy~~L~~~~~rl~Fl~~iql~lLd~f~~rL~~~~~a~~~~~~~~g~~~l 557 (801)
+++ . ++..++|+|.||++|++++..|++||..||.+.+|++|++.++..+.+.|+ .+..+++.+++.++..
T Consensus 427 s~~-~--S~~~~~kiP~~a~~F~~ll~~i~dr~k~lp~~~~~~qFl~s~~~~l~~~~r-~ll~~~~~~e~~~s~~----- 497 (737)
T KOG2218|consen 427 SKD-L--SDENDLKIPDCAERFRDLLSAIIDRYKNLPALDYQLQFLRSQLDILRQEFR-ILLTRYKEFELSKSLH----- 497 (737)
T ss_pred hhh-h--hhhhhhccchhHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccccccc-----
Confidence 876 2 556799999999999999999999999999999999999999766555554 4556677777654322
Q ss_pred HHHHHHHhhHHHHHHHHHhhcCCchhHHhhHHhhhHhhhhcCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 003707 558 LKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLETSLSDNSRSEWPVGGSRSGIFDEEIKKLEEFRTEWVEKISVV 637 (801)
Q Consensus 558 ~rl~~~~nSa~yi~~~L~eWsed~~FleL~~~~~~r~~~~~~~~~~s~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~ 637 (801)
.++|.+.|+.+||+.+|++||+++||++||++..+ ..+. -+++.+..+|+|+++++.|+++..+|..+++.+
T Consensus 498 ~~li~~~n~VNyvervl~ews~nv~fl~l~~a~~d---~~v~-----~l~e~~~~ns~F~~~~~~leel~~~~~~~~iv~ 569 (737)
T KOG2218|consen 498 GFLIAILNSVNYVERVLKEWSSNVVFLDLADAVED---EDVY-----MLHEATSGNSVFEEVSNFLEELMSTWMLKLIVH 569 (737)
T ss_pred hhHHHhhhhHHHHHHHHHHHhcchhHHHHHHHhhc---cccc-----ccccccccchhHHHHHHHHHHHhhHHHHHHHHH
Confidence 68999999999999999999999999999998863 1111 112444556999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccc-cccc-cccccCCCHhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003707 638 ILRGFDALSRDYVKNRRQ-WQEK-SEENWSVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMS 715 (801)
Q Consensus 638 v~~~~~~~lr~Y~~~~~~-w~~~-~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~L~~~Il~~ 715 (801)
+.+++++.+++|++++|. |.++ +..+++||.++|++++.|++++..|+..|+|.+|..+||.++..||.|.|+.+++.
T Consensus 570 ~l~~~~~~~r~y~k~~w~s~~~~~~~~~~svS~~iv~~ld~Lr~~l~~l~~~l~~~~fs~~~~~l~~~idv~~~~e~il~ 649 (737)
T KOG2218|consen 570 LLQNLKDLLRNYKKNKWVSLEESENIGPLSVSREIVNLLDGLRRHLDDLEENLNPLDFSAIWRNLQENIDVYVFEEIILK 649 (737)
T ss_pred HHHhhHHHHHhhhhcchhcccchhhcccchHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHhhhhHHHHHHHHHh
Confidence 999999999999997643 4432 23578899999999999999999999999999999999999999999999999999
Q ss_pred CcccchhhHhHHHHHHHHHHHHHhhhhcCCCCchhhHHHHHHccCCChHH--HHHhhh-chHhHHHhhCCCccCHHHHHH
Q 003707 716 NAKFYDGGVVRFGCDMEVLFGVFRAWCLRPEGFFPKTSEGLKLLKMREEQ--LQGGVL-GGEKWMKQSGITHLSVAEAEK 792 (801)
Q Consensus 716 n~~Fs~~Ga~Qf~~D~~~L~~~f~~~~~rpe~~f~~l~Ea~~LL~l~~~~--l~~~l~-~~~~~L~elgI~~Ls~~ea~~ 792 (801)
|.+|+.+|+.||..|+.+|+++|++||.||+.+|++++|+|.+|+|..++ +++++. .++.+++++||+.|++.+|.+
T Consensus 650 ~~~f~~~~~~~f~~Da~~L~~~fs~yc~rp~~~f~~l~e~~~vL~l~e~~~~l~~~Ls~~~~~~le~~~i~~Ls~~di~~ 729 (737)
T KOG2218|consen 650 NHKFESSGLFQFVHDAKRLLEVFSEYCVRPLLKFKSLRELVCVLKLEEGELRLKDALSRPGTKCLEELGIKYLSDQDIED 729 (737)
T ss_pred hhhcCchHHHHHHHHHHHHHHHhcccccchhHHHHHHHhhhhhhhhcccHhhhhhhhcccHHHHHHHhhhhhcCHHHHHH
Confidence 88999999999999999999999999999999999999999999999996 556666 479999999999999999999
Q ss_pred HHHhcccC
Q 003707 793 IEKNRVFM 800 (801)
Q Consensus 793 vL~rRv~~ 800 (801)
+|+||||+
T Consensus 730 ~l~~rv~~ 737 (737)
T KOG2218|consen 730 VLYRRVYG 737 (737)
T ss_pred HHHHHhcC
Confidence 99999996
No 2
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=100.00 E-value=1.2e-100 Score=883.24 Aligned_cols=469 Identities=35% Similarity=0.586 Sum_probs=363.6
Q ss_pred hhHHHhHhhHHHhcccccc-----ccccCccchHHHHHHHHHhhHHhHHhhhHHHHHhccccccchHHHHHHHHHHHHHH
Q 003707 296 WAIEELVNPIAVASQHHFS-----KWTDKPEFIFTLVYKITRDYVDSMDELLQPLVDEALLVGYSCREEWISAMVTALLT 370 (801)
Q Consensus 296 w~i~~Lv~P~~~RF~YHF~-----NrldKPEw~f~~vl~~i~~~~~fl~~~lqp~l~~~~~~~~~~~~efi~~ll~~l~~ 370 (801)
|||++|++||.+||+|||+ ||+|||||||+||++|+++|.+|+.+.+||+++++|+.+++++.+||++||+++++
T Consensus 1 w~~~~l~~p~~~rF~yHF~~~r~Tn~~~kPEw~f~~i~~~~~~~~~~l~~~iq~~~~~~~~~~~~~~~~fi~~ll~~~~~ 80 (494)
T PF04437_consen 1 WPIDVLVNPFKKRFRYHFMGNRPTNRLDKPEWYFTFILKWIRDHRDFLEECIQPLLDENGLTYIDAREEFIRGLLPPVRE 80 (494)
T ss_dssp HHHHHHCHHHHHHHHHHT----S---CCCHHHHHHHHHHHHHHH---HHHHHHHH-BGGTB-HHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcCCCCCcCcccchHHHHHHHHHHHHHhhHHHHHHcCHHHHhcCCccccHHHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhhccCCcccccccCCccCcccceEeecCCchHHH
Q 003707 371 YLAKEIFPVYVDQLDEESISGVQSQARISWLHLVDLMISFDKRIKSLVEQSGILFSLQEDGNLQKISSLSVFCDRPDWLD 450 (801)
Q Consensus 371 kL~~~i~p~l~~~~~d~~~~~~~~~~~sl~~HlIdE~l~FD~~Lr~~~~y~~~~~~~~~~~~w~gls~~~vl~~~~~~f~ 450 (801)
||+.++ |.+. ++.++|+|||||+++||++|++.|+|+| + |.|.+ ++||+ +++||+
T Consensus 81 Kl~~~l-~~~~-------------~~~~~l~HlI~e~~~FD~~L~~~~~y~~-------d--~~~~~-~~vL~-~~~~~~ 135 (494)
T PF04437_consen 81 KLRSDL-PELL-------------DDPSLLSHLIDEILSFDKELRSLYGYPG-------D--WQGST-LDVLC-QPDWFD 135 (494)
T ss_dssp HHHHHH---TT-------------S-HHHHHHHHHHHHHHHHHHHHTS---S----------------CGGGS--HHHHH
T ss_pred HHHHHH-Hhhc-------------cChhHHHHHHHHHHHHHHHHHHHcCCCC-------c--cchhH-HHHhc-chHHHH
Confidence 999988 5443 3358999999999999999999999987 1 66644 45777 699999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcccccccccccCCCCCCCCChhHHHHHHHHHHHHhhccCCCChhhHHHHHHHhchHH
Q 003707 451 IWAQIELADTLENLKHDVDDERNWKMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPV 530 (801)
Q Consensus 451 ~Wl~~E~~~A~~r~~~Ii~s~daw~i~~d~~~~~~~~~~~K~p~~A~~~~~LL~~iteRy~~L~~~~~rl~Fl~~iql~l 530 (801)
+|+++|+++|.+||++|+++++||.++|++.. ++.+++|||+||++|++||++||+||++||+++||+||++.||++|
T Consensus 136 ~Wl~~E~~~a~~r~~~i~~s~~aw~~~~~~~~--~~~~~~k~t~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~l 213 (494)
T PF04437_consen 136 RWLNAEKEFALERFDEIISSPDAWQIDYDDVE--ADSDELKPTKSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPL 213 (494)
T ss_dssp HHHHHHHHHHHHHHH---------------HT--TSSGGGG-GGHHHHHHHHHHHHHHHHHHHHH---GG--GHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccchhhhhhhcccc--CCchhhcchHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999864 5678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh----hhcccCchhHHHHHHHHhhHHHHHHHHHhhcCCchhHHhhHHhhhHhhhhcCCCCCC-C
Q 003707 531 IQKFLDCVLLRCQEAEG----LTALTDEDGLLKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLETSLSDNSRS-E 605 (801)
Q Consensus 531 Ld~f~~rL~~~~~a~~~----~~~~~g~~~l~rl~~~~nSa~yi~~~L~eWsed~~FleL~~~~~~r~~~~~~~~~~s-~ 605 (801)
||+||+||.++|++|++ .+...|.+|++++|+++|||+||+++|++|||++|||+++..... ..+ ++.. .
T Consensus 214 ld~~~~~L~~~~~~~~~~~s~~~~~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~~~~----~~~-~~~~~~ 288 (494)
T PF04437_consen 214 LDDYHDRLSQSLEAFESSTSTLASLSGDSGLERLCKILNSANYIENVLREWSEDVFFLQMRAKESE----SSN-NSLEDI 288 (494)
T ss_dssp HHHTHHHHHHHHHHHHHT----SCEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH-----------------HHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehhhccchh----hcc-cccccc
Confidence 99999999999999999 566789999999999999999999999999999999976632221 000 0000 0
Q ss_pred C-CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc----cccCCCHhHHHHHHHHHHH
Q 003707 606 W-PVGGSRSGIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQEKSE----ENWSVSEMLVGALDYLQGK 680 (801)
Q Consensus 606 ~-~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~~~~lr~Y~~~~~~w~~~~~----~~~~~S~el~~~L~~L~~~ 680 (801)
+ ..++.+|+|||++|+.|+++++++.+.|++.++++|++++|+|++ +.+|..... .+.+||+++|++|..|+++
T Consensus 289 ~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k-~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~ 367 (494)
T PF04437_consen 289 ANETSSEEGSIFDETISAYEKLRKRMLESIVDRVVKEFKASLKAYFK-RSQWSSIESPSDSSPLSPSPELVPALSLLRSR 367 (494)
T ss_dssp HHHHTT--S-TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT---GGGT-------------GGGHHHHHHHHHH
T ss_pred cccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccCCCCcccccccccCCCCHHHHHHHHHHHHH
Confidence 0 012367999999999999999999999999999999999999999 678875443 4789999999999999999
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHHHhhhccCcccchhhHhHHHHHHHHHHHHHhhhhcCCCCchhhHHHHHHccC
Q 003707 681 MSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLRPEGFFPKTSEGLKLLK 760 (801)
Q Consensus 681 L~~L~~~L~~~~f~~i~r~ia~~l~~~L~~~Il~~n~~Fs~~Ga~Qf~~D~~~L~~~f~~~~~rpe~~f~~l~Ea~~LL~ 760 (801)
|++|+++|++++|.++||+|++.|++|||++|++.| +||++||.||.+||++|+++|+.|+.+|+++|+++.|||+||+
T Consensus 368 L~~L~~~L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~L~~~~~~~~~~p~~~f~~l~E~~~LL~ 446 (494)
T PF04437_consen 368 LSFLERSLPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRALFSVFSQYTPRPEAFFKRLREACKLLN 446 (494)
T ss_dssp HHHHHTS--HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHHHHTTS--TTSGG-HHHHHHHHHHHHHG
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999977 9999999999999999999999999999999999999999999
Q ss_pred CChHH---HHHhhh-------chHhHHHhhCCCccCHHHHHHHHHhcc
Q 003707 761 MREEQ---LQGGVL-------GGEKWMKQSGITHLSVAEAEKIEKNRV 798 (801)
Q Consensus 761 l~~~~---l~~~l~-------~~~~~L~elgI~~Ls~~ea~~vL~rRv 798 (801)
|+.++ +++.+. +++++|+++||++||++||++||+|||
T Consensus 447 L~~~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~rRV 494 (494)
T PF04437_consen 447 LPYGSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLYRRV 494 (494)
T ss_dssp GGG-CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHHHHH
T ss_pred CCCcchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHHccC
Confidence 99987 333332 458999999999999999999999997
No 3
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=3e-05 Score=89.60 Aligned_cols=643 Identities=14% Similarity=0.171 Sum_probs=351.5
Q ss_pred CchhhhhhhhccCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHhhhhhhccC
Q 003707 14 SSTTLSFLNDNLTNKEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLTDLASASRS 93 (801)
Q Consensus 14 ~~~~~~~ld~~~~s~~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 93 (801)
+-...+|+|.-|.+.+-|.++|++++.++.+...++.+|+...+.=+.+-.....-..++...+..+-..+..++..+.+
T Consensus 18 ~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~ 97 (793)
T KOG2180|consen 18 EFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAES 97 (793)
T ss_pred chhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34557888888888899999999999999999999999988776655444333333444444444444445444443321
Q ss_pred CCCCCCcchhhhhhhhhhcHHHHHHHHHHHHHHHHH----HHHHHHhhHhhhhHHHHhhhcccccccCCCCCCHHHHHHH
Q 003707 94 PSSVSDGGVRAKQILGEELPALAKEVARVDMVRAYA----ETALKLDSLVGDIEDAVSSAMNNNRRSNSTQDSEDMRLLA 169 (801)
Q Consensus 94 ~~~~~~~~~~~~~~l~~~l~~l~~~l~~le~~~~Y~----~~~~~~e~l~~d~e~~~~s~~~~~~~~~~~~~~~~~al~a 169 (801)
++ +-....-+.|++|+-|++=+ -++..+.-|++-+|. ++.-. +..+=.++..+
T Consensus 98 ----Te----------~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~ves-----L~~l~----~kr~y~e~a~~ 154 (793)
T KOG2180|consen 98 ----TE----------AMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVES-----LNALL----SKRSYGEAASP 154 (793)
T ss_pred ----HH----------HHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHH-----HHHHH----hhccHHHHHhH
Confidence 11 23445566777788887766 455666777766653 11111 11111233333
Q ss_pred HHHHHHHHHHHhHhhhcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccCCCccccCccccCCcc
Q 003707 170 IKALKQAEDILTSVTKTRPQWARLVAAVDHRVDRALAMLRPQAIADHRALLSSLGWPPPLSILASSNPETRASSEVSNPL 249 (801)
Q Consensus 170 ~~~L~~~~~~~~~~~~~~~~~~~Lv~~v~~~v~~~~~~Lr~~l~~~l~~~L~~l~WP~~~~~~~~~~~~~~~~~~~~~pl 249 (801)
+...-++.+.-...+. ..=+..+..++++....+..++.++|.+.-..= .. .. .+
T Consensus 155 lqai~~ll~~F~~Yk~-----v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~-----~~-~~-------------~~- 209 (793)
T KOG2180|consen 155 LQAILQLLNHFIAYKS-----VDEIANLSESIDKLKKSLLSQIFQDFKAAFSGG-----ET-HE-------------EA- 209 (793)
T ss_pred HHHHHHHHHHHHHhcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CC-CC-------------Cc-
Confidence 3333333321111111 111334556788889999999999998865411 10 00 00
Q ss_pred cccccchHHHHHHHHHHHhhhhhhhhhhhhhhhccCccccccCCchhhHHHhHhhHHHhcccccc-ccccCccchHHHHH
Q 003707 250 FTMRGDLKHQYCENFLALCRLQELQRQRKSRQLEGHNRELALHQPLWAIEELVNPIAVASQHHFS-KWTDKPEFIFTLVY 328 (801)
Q Consensus 250 ~~~~~~~~~~~~~~f~~L~~LQ~~~~~~~~~~~~~~~~~~~~~~~Lw~i~~Lv~P~~~RF~YHF~-NrldKPEw~f~~vl 328 (801)
-..+..+++|..+ +.-+|..+ ..-.=|=+.-.+.-+..=|+=.=. .|+||-+--++|+.
T Consensus 210 -----~~l~~l~daC~v~-d~lepsvr--------------eelIkwf~~qqL~ey~~IF~en~E~a~LDkidrRY~wfK 269 (793)
T KOG2180|consen 210 -----LLLQKLSDACLVV-DALEPSVR--------------EELIKWFCSQQLEEYEQIFRENEEAASLDKLDRRYAWFK 269 (793)
T ss_pred -----cHHHHHHHHHHHH-HHhCCccH--------------HHHHHHHHHHHHHHHHHHHhccHhhhhhhhHHHHHHHHH
Confidence 1122222222221 11111111 011223333333333332211111 58999999888888
Q ss_pred HHHHhhHHhHHhhhHHHHHhccccccchHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccchhhhHHHHHHHHHH
Q 003707 329 KITRDYVDSMDELLQPLVDEALLVGYSCREEWISAMVTALLTYLAKEIFPVYVDQLDEESISGVQSQARISWLHLVDLMI 408 (801)
Q Consensus 329 ~~i~~~~~fl~~~lqp~l~~~~~~~~~~~~efi~~ll~~l~~kL~~~i~p~l~~~~~d~~~~~~~~~~~sl~~HlIdE~l 408 (801)
+.++++..- -.|++-..=-.++-...+|.+- -+.-|.+ ++.+.. +. ....+|.|-|..++
T Consensus 270 r~L~~fe~k----~~~iFP~dW~v~~RLt~eFc~~----Tr~~L~~-----Il~~~~------~~-~~v~lll~Alq~Tl 329 (793)
T KOG2180|consen 270 RLLRDFEEK----WKPIFPADWHVAYRLTIEFCHQ----TRKQLES-----ILKRRK------KE-PDVKLLLFALQSTL 329 (793)
T ss_pred HHHHHHHHh----ccccCCcccchhHHHHHHHHHH----HHHHHHH-----HHHHhh------hC-ccHHHHHHHHHHHH
Confidence 888887654 3334322111222223444221 2222221 111111 11 22478999999999
Q ss_pred HHHHHHHHhhccCCcccccccCCc----------cCc-ccceEeecCCchHHHHHHHHHHHHHHHHHHHhhccCCCccc-
Q 003707 409 SFDKRIKSLVEQSGILFSLQEDGN----------LQK-ISSLSVFCDRPDWLDIWAQIELADTLENLKHDVDDERNWKM- 476 (801)
Q Consensus 409 ~FD~~Lr~~~~y~~~~~~~~~~~~----------w~g-ls~~~vl~~~~~~f~~Wl~~E~~~A~~r~~~Ii~s~daw~i- 476 (801)
.|++.|...|+ +|.+. +.+..+ -.| +|. +| +.++..|++.+-+.-.+.|+.++..+. |..
T Consensus 330 eFE~~L~kRF~-g~~~~-~~~~~ns~~~~k~~~~f~~~isS--cF---EPhLtlyI~~qek~l~ellek~v~e~~-~~~~ 401 (793)
T KOG2180|consen 330 EFEKFLDKRFS-GGTLT-GKPEKNSQFEPKERFNFEGAISS--CF---EPHLTLYIESQEKELSELLEKFVSEEK-WDGE 401 (793)
T ss_pred HHHHHHHHHhc-CCCCC-CCCccccccccccccchhhHHHH--hc---ccchhhhhhHHHHHHHHHHHHHHhhhc-cCCC
Confidence 99999998763 22211 111111 123 222 33 458999999999999999999887664 422
Q ss_pred ccccccccCCCCCCCCChhHHHHHHHHHHHHhhccCCCCh-hhHHHHHHHhchHHHHHHHHHHHHHHH-hh----hhhh-
Q 003707 477 KVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTV-SLRSRFLRLAGAPVIQKFLDCVLLRCQ-EA----EGLT- 549 (801)
Q Consensus 477 ~~d~~~~~~~~~~~K~p~~A~~~~~LL~~iteRy~~L~~~-~~rl~Fl~~iql~lLd~f~~rL~~~~~-a~----~~~~- 549 (801)
.+.. .+....--|.||.-|+..=..+| .+.-|..- ..=+.-+. +....|+.|-..++..+- .. .|.+
T Consensus 402 p~~~----~~~~s~vlpSsadlF~~Ykkclt-q~~~Ls~n~dpl~~~~~-~f~k~LreYa~kil~~~lP~~t~~s~g~~v 475 (793)
T KOG2180|consen 402 PKSN----TDEESLVLPSSADLFVAYKKCLT-QCSELSENNDPLIALLA-VFSKWLREYAQKILLGNLPDTTSSSDGAAV 475 (793)
T ss_pred CCCC----cccccccCccHHHHHHHHHHHHH-HHHHhccCCchHHHHHH-HHHHHHHHHHHHHhhccCCcccccccCchh
Confidence 1111 11123333556665554433344 33333322 22222222 334556666544432110 00 0000
Q ss_pred --------c---ccCchhHHHHHHHHhhHHHHHHHHHhhcCCchhHHhhHHhhhHhhhhcCCCCCCCCCCCCCCCCCcHH
Q 003707 550 --------A---LTDEDGLLKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLETSLSDNSRSEWPVGGSRSGIFDE 618 (801)
Q Consensus 550 --------~---~~g~~~l~rl~~~~nSa~yi~~~L~eWsed~~FleL~~~~~~r~~~~~~~~~~s~~~~~~~~~siFde 618 (801)
+ ..-...+..+|.+++.+.|+-..-++-.+. |.|.....- ..+.=|.+
T Consensus 476 ~~l~~~e~~~~~~~t~d~l~di~~~lst~e~~~~tt~qle~k--l~e~~~~~~-------------------~~~vs~s~ 534 (793)
T KOG2180|consen 476 YLLLRIEGAEYCRFTIDQLLDICCILSTAEYCLATTIQLEKK--LKEIVDASY-------------------IKGVSFSE 534 (793)
T ss_pred hhHHHhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-------------------hhhcchHH
Confidence 0 011257788999999999998777665444 222222110 12445777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCHhHHHHHHHHHHHHHHHHhcc--CHHHHHHH
Q 003707 619 EIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQEKSEENWSVSEMLVGALDYLQGKMSIIEGSL--NAMDFIMV 696 (801)
Q Consensus 619 ~i~~y~~l~~~~~~~iv~~v~~~~~~~lr~Y~~~~~~w~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L--~~~~f~~i 696 (801)
....+......+..-++..+.......+-+|.+-+ |...+... .=|+-+..+...++..-......+ ....|...
T Consensus 535 ~r~~~~~~~~~s~q~lv~D~e~a~~~~lt~msk~~--~~~l~~vg-DQss~v~s~~~h~~q~~~~i~~~~~~~r~~f~~f 611 (793)
T KOG2180|consen 535 EREVFSSKISVSLQFLVQDLENALDPDLTPMSKMQ--WQNLEGVG-DQSSYVSSLNFHLSQFVPLIRDALALDRKYFAQF 611 (793)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhCcccChHHHHH--HHHhcCcc-ccchhhHHHHHHHHhhhHHHHHHhccccchHHHh
Confidence 77778888888888999999999999999999954 54332111 235555666666666666666643 44557778
Q ss_pred HHHHHHHHHHHHHHhhhccCcccchhhHhHHHHHHHHHHHHHh-------------hhhcCCCCchhhHHHHHHccCCCh
Q 003707 697 WRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFR-------------AWCLRPEGFFPKTSEGLKLLKMRE 763 (801)
Q Consensus 697 ~r~ia~~l~~~L~~~Il~~n~~Fs~~Ga~Qf~~D~~~L~~~f~-------------~~~~rpe~~f~~l~Ea~~LL~l~~ 763 (801)
.-+.|...-..+.+.+.. ..--+..|+.||..|...+...+- +|.+...+.+-++.-.+++|=.|.
T Consensus 612 c~r~a~~f~~kf~~~l~R-~k~~s~~g~EQLlldt~slK~~ll~lp~~~s~~n~~~~y~~~~~~~m~~~e~iiK~lm~p~ 690 (793)
T KOG2180|consen 612 CVRLAASFIPKFLNVLFR-AKPISVVGAEQLLLDTESLKDALLTLPPLRSLFNDKRPYKRHVDNNMTQAEMIIKVLMTPL 690 (793)
T ss_pred hHHHHhhcchHHHHHHHH-hhhHhhhHHHHHHHHHHHHHHHhhcCCchhhhccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888888877776665544 335788999999999987766641 233333355666666677776555
Q ss_pred HH----HHHhhh-----c---hHhHHHhhCCC
Q 003707 764 EQ----LQGGVL-----G---GEKWMKQSGIT 783 (801)
Q Consensus 764 ~~----l~~~l~-----~---~~~~L~elgI~ 783 (801)
+. ...|++ + ...+|+--||.
T Consensus 691 ~~~~~f~e~yikL~~~~~~a~~~~vLelKgv~ 722 (793)
T KOG2180|consen 691 DPADDFYEQYIKLLPDPDSAEWQKVLELKGVK 722 (793)
T ss_pred CchHHHHHHHHHhcCCCcHHHHHHHHHhcCCc
Confidence 44 234444 1 25666666664
No 4
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=98.71 E-value=1.8e-05 Score=89.11 Aligned_cols=363 Identities=13% Similarity=0.199 Sum_probs=225.3
Q ss_pred hhhhhhhccCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHhhhhhhccCCCC
Q 003707 17 TLSFLNDNLTNKEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLTDLASASRSPSS 96 (801)
Q Consensus 17 ~~~~ld~~~~s~~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 96 (801)
..+|||..|.+.+-|.++|++++.++.+...++.++..+.+....+...+...-..+...+.++-.+...+...+.+
T Consensus 6 pv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~--- 82 (383)
T PF04100_consen 6 PVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEE--- 82 (383)
T ss_pred HHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 47999999999999999999999999999999999988877766433333222344445555555555555554320
Q ss_pred CCCcchhhhhhhhhhcHHHHHHHHHHHHHHHHH----HHHHHHhhHhhhhHHHHhhhcccccccCCCCCCHHHHHHHHHH
Q 003707 97 VSDGGVRAKQILGEELPALAKEVARVDMVRAYA----ETALKLDSLVGDIEDAVSSAMNNNRRSNSTQDSEDMRLLAIKA 172 (801)
Q Consensus 97 ~~~~~~~~~~~l~~~l~~l~~~l~~le~~~~Y~----~~~~~~e~l~~d~e~~~~s~~~~~~~~~~~~~~~~~al~a~~~ 172 (801)
++ .-+..+-+.|++|+.|+.=+ -++.++..|+.-++.- ...+. ...=.+...++..
T Consensus 83 -sE----------~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL-----~~~~~----~r~Y~e~a~~L~a 142 (383)
T PF04100_consen 83 -SE----------QMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQL-----KELAK----KRQYKEIASLLQA 142 (383)
T ss_pred -HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH----cCCHHHHHHHHHH
Confidence 11 33456677888888888876 5666777776655431 11111 1111333344444
Q ss_pred HHHHHHHHhHhhhcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccCCCccccCccccCCccccc
Q 003707 173 LKQAEDILTSVTKTRPQWARLVAAVDHRVDRALAMLRPQAIADHRALLSSLGWPPPLSILASSNPETRASSEVSNPLFTM 252 (801)
Q Consensus 173 L~~~~~~~~~~~~~~~~~~~Lv~~v~~~v~~~~~~Lr~~l~~~l~~~L~~l~WP~~~~~~~~~~~~~~~~~~~~~pl~~~ 252 (801)
+.++.......+. -+ -++.+..+++...+.|+.++..+|+.+. +..... +|
T Consensus 143 v~~L~~~F~~yks----i~-~I~~L~~~i~~l~~~L~~qI~~df~~~f-----~~~~~~---------------~~---- 193 (383)
T PF04100_consen 143 VKELLEHFKPYKS----IP-QIAELSKRIDQLQNELKEQIFEDFEELF-----GSQGDE---------------SP---- 193 (383)
T ss_pred HHHHHHHHHcccC----cH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccCCcc---------------cc----
Confidence 4444422222222 12 2444556788899999999999999988 221110 00
Q ss_pred ccchHHHHHHHHHHHhhhhhhhhhhhhhhhccCccccccCCchhhHHHhHhhHHHhcccccc-ccccCccchHHHHHHHH
Q 003707 253 RGDLKHQYCENFLALCRLQELQRQRKSRQLEGHNRELALHQPLWAIEELVNPIAVASQHHFS-KWTDKPEFIFTLVYKIT 331 (801)
Q Consensus 253 ~~~~~~~~~~~f~~L~~LQ~~~~~~~~~~~~~~~~~~~~~~~Lw~i~~Lv~P~~~RF~YHF~-NrldKPEw~f~~vl~~i 331 (801)
+........+|..+ +.-.+..+ ..-.=|=++-.+.++..-|+-... .++|+-+-=|+|+.+.+
T Consensus 194 -~~~~~~l~~aC~vv-d~L~~~~r--------------~~li~wf~~~qL~eY~~iF~~~~e~~~Ld~i~RRy~Wfkr~L 257 (383)
T PF04100_consen 194 -GQSSQQLSDACLVV-DALGPDVR--------------EELIDWFCNKQLKEYRRIFRENDEAASLDNIDRRYAWFKRLL 257 (383)
T ss_pred -cchHhHHHHHHHHH-HHcCchHH--------------HHHHHHHHHHHHHHHHHHHcccccccchhhHHHHHHHHHHHH
Confidence 11233334444422 22222221 123558888899999999987777 78999999999999888
Q ss_pred HhhHHhHHhhhHHHHHhccccccchHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccchhhhHHHHHHHHHHHHH
Q 003707 332 RDYVDSMDELLQPLVDEALLVGYSCREEWISAMVTALLTYLAKEIFPVYVDQLDEESISGVQSQARISWLHLVDLMISFD 411 (801)
Q Consensus 332 ~~~~~fl~~~lqp~l~~~~~~~~~~~~efi~~ll~~l~~kL~~~i~p~l~~~~~d~~~~~~~~~~~sl~~HlIdE~l~FD 411 (801)
++|..-+.. ++- .+..+.+..+..+...-+.-|..-+ . . ....-...+|.+.+..++.|+
T Consensus 258 ~~~e~~~~~----iFP----~~W~v~~~L~~~Fc~~Tr~dL~~iL----~-~-------~~~~~dv~~Ll~aLq~T~~FE 317 (383)
T PF04100_consen 258 KNFEEKFAN----IFP----PSWRVPERLCVEFCEITRKDLSEIL----S-K-------RKSELDVKLLLKALQKTLEFE 317 (383)
T ss_pred HHHHhhccc----cCC----CcCcHHHHHHHHHHHHHHHHHHHHH----h-h-------cCCCCcHHHHHHHHHHHHHHH
Confidence 888655332 211 3466666666666666666664322 1 1 111123478999999999999
Q ss_pred HHHHHhhccCCcc---cccccC-----CccCc-ccceEeecCCchHHHHHHHHHHHHHHHHHHHhhccCC
Q 003707 412 KRIKSLVEQSGIL---FSLQED-----GNLQK-ISSLSVFCDRPDWLDIWAQIELADTLENLKHDVDDER 472 (801)
Q Consensus 412 ~~Lr~~~~y~~~~---~~~~~~-----~~w~g-ls~~~vl~~~~~~f~~Wl~~E~~~A~~r~~~Ii~s~d 472 (801)
+.|-..|...+.. .....+ ....| ||. +| +.++..|++.|.+.=.+.++.+++.+.
T Consensus 318 ~~L~~rF~~~~~~~~~~~~~~e~~~~~~~f~g~IS~--~F---epyL~iyv~~qdk~L~~~l~~~~~~~~ 382 (383)
T PF04100_consen 318 KELAKRFAGSTDESQEIEKKKEMKEIAENFKGIISS--CF---EPYLSIYVDSQDKNLSEKLDKFISEEK 382 (383)
T ss_pred HHHHHHhcccccccccccccccccccccccccchHH--hh---HhhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999988422110 000000 13344 343 44 469999999999999999999988764
No 5
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=98.14 E-value=0.0002 Score=87.35 Aligned_cols=276 Identities=16% Similarity=0.182 Sum_probs=200.1
Q ss_pred CCCCCChhHHHHHHHHHHHHhhccCCCChhhHHHHHHHhchHHHHHH-HHHHHHHHHhhh-hhhc-----ccCchhHHHH
Q 003707 488 EDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPVIQKF-LDCVLLRCQEAE-GLTA-----LTDEDGLLKV 560 (801)
Q Consensus 488 ~~~K~p~~A~~~~~LL~~iteRy~~L~~~~~rl~Fl~~iql~lLd~f-~~rL~~~~~a~~-~~~~-----~~g~~~l~rl 560 (801)
+..-.+..|..+++-...-..|+..|....-=-+.+..|..-+++.+ .+.+...+++.. .+.+ ..+.+.+. .
T Consensus 407 ~~~ls~~~a~~il~~~~es~~R~~~l~~~~~~~~~~~~if~~Ll~~l~~~~i~~~lea~~~~~~~~~~~~~~~~~~l~-f 485 (710)
T PF07393_consen 407 DSLLSLEVAENILQWNKESLGRCLELSPPSDLPKNCQEIFEILLQSLGEEHIEPALEAAYYKLSSQDIAESKEVPPLV-F 485 (710)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccCCCCCcc-H
Confidence 44555788999999999999999888765555577777766666665 455666666321 1111 23345676 8
Q ss_pred HHHHhhHHHHHHHHHhhcCCchhHHhhHHhhhHhhhhcCCCCCCCCCCCCCCCCCc-------HHHHHHHHHHHHHHHHH
Q 003707 561 ANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLETSLSDNSRSEWPVGGSRSGIF-------DEEIKKLEEFRTEWVEK 633 (801)
Q Consensus 561 ~~~~nSa~yi~~~L~eWsed~~FleL~~~~~~r~~~~~~~~~~s~~~~~~~~~siF-------de~i~~y~~l~~~~~~~ 633 (801)
..+++-++-|.+.+..-=++.+. .-+ ....++. -..+...+......++.
T Consensus 486 l~~i~~~~~i~~l~~~~~~~~l~----pl~-------------------~~~~~~~~~~~~~k~~~~~~le~~v~~gL~~ 542 (710)
T PF07393_consen 486 LELINQADTILQLLQIFYKEELL----PLI-------------------QSSPDFLNECIQKKKSFESRLEEKVNAGLNK 542 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----Hhc-------------------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777776643222111 101 0112233 33444455555666667
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccc---ccCCCHhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Q 003707 634 ISVVILRGFDALSRDYVKNRRQWQEKSEE---NWSVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFR 710 (801)
Q Consensus 634 iv~~v~~~~~~~lr~Y~~~~~~w~~~~~~---~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~L~~ 710 (801)
.++.++..++..+. .-+ +..+.+.+.. ...+|+.-......|......+..+|.......++..|+..+-..|.+
T Consensus 543 ~i~~l~~~v~~iL~-~Qk-k~Df~p~~~~~~~~~~~T~ac~~vv~~L~~~~~~~~~~l~~~nl~~f~~elg~~l~~~l~~ 620 (710)
T PF07393_consen 543 GIDVLMNWVEFILS-EQK-KTDFKPKEDDLSLDQQPTPACQEVVEFLERHCSLLKGSLDGSNLDVFLQELGERLHRLLLK 620 (710)
T ss_pred HHHHHHHHHHHHHh-hcC-CCCCCCCccccccccCCCHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHH
Confidence 77788888888887 444 4556554322 236899999999999999999999999999999999999999999999
Q ss_pred hhhccCcccchhhHhHHHHHHHHHHHHHhhhhcCCC--CchhhHHHHHHccCCChHHHHHhhhchHhHHHhhCCCccCHH
Q 003707 711 GILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLRPE--GFFPKTSEGLKLLKMREEQLQGGVLGGEKWMKQSGITHLSVA 788 (801)
Q Consensus 711 ~Il~~n~~Fs~~Ga~Qf~~D~~~L~~~f~~~~~rpe--~~f~~l~Ea~~LL~l~~~~l~~~l~~~~~~L~elgI~~Ls~~ 788 (801)
.+-. - +||..||.|+..|++.....+..|.. |. ..|..|++-+.|+.++++.+++++.+ .....+++.
T Consensus 621 h~kk-~-~vs~~Gg~~l~~Dl~~Y~~~~~~~~~-~~v~~~F~~L~~l~nl~~v~~~~l~~~~~~-------~~~~~~~~~ 690 (710)
T PF07393_consen 621 HLKK-F-TVSSTGGLQLIKDLNEYQDFIRSWGI-PSVDEKFEALKELGNLFIVDPENLKELCRE-------GQLGRFSPE 690 (710)
T ss_pred HHHh-C-ccCchhHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHhheeecHHHHHHHHhh-------ccccCCCHH
Confidence 8855 4 99999999999999999999888744 43 58999999999999988888777543 233789999
Q ss_pred HHHHHHHhccc
Q 003707 789 EAEKIEKNRVF 799 (801)
Q Consensus 789 ea~~vL~rRv~ 799 (801)
++...++||..
T Consensus 691 ~i~~fi~~R~D 701 (710)
T PF07393_consen 691 EIYEFIQRRSD 701 (710)
T ss_pred HHHHHHHHhhh
Confidence 99999999975
No 6
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=98.13 E-value=0.057 Score=66.43 Aligned_cols=644 Identities=15% Similarity=0.188 Sum_probs=322.8
Q ss_pred CchhhhhhhhccCCHHH---HHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHhh
Q 003707 14 SSTTLSFLNDNLTNKEY---HAR----AARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLTD 86 (801)
Q Consensus 14 ~~~~~~~ld~~~~s~~d---l~~----~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (801)
+=.+..|+|+.|++..+ .+. +.+|+..|+-...+....|.+.-.++-...=.....-++++..+..++.++..
T Consensus 9 ~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~ 88 (766)
T PF10191_consen 9 DFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMAS 88 (766)
T ss_pred CCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678899999887533 333 34455555555555554444332222211001111112333333333444443
Q ss_pred hhhhccCCCCCCCcchhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHhhhcccccccCCCCCCHHHH
Q 003707 87 LASASRSPSSVSDGGVRAKQILGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAVSSAMNNNRRSNSTQDSEDMR 166 (801)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~le~~~~Y~~~~~~~e~l~~d~e~~~~s~~~~~~~~~~~~~~~~~a 166 (801)
+...... .+..+.. -++.|..+-+=..|++.++.=+.-+.+...|..+|++...+ . +.
T Consensus 89 v~~~~~~---~e~~t~~----s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~-----------~----d~ 146 (766)
T PF10191_consen 89 VQEEIKA---VEQDTAQ----SMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFES-----------G----DI 146 (766)
T ss_pred HHHHHhh---hhccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-----------C----CH
Confidence 3332210 1111112 25778888888889999999999999999999999874211 1 11
Q ss_pred HHHHHHHHHHHHHHhHhhhcchhhh--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccCCCccccCccc
Q 003707 167 LLAIKALKQAEDILTSVTKTRPQWA--RLVAAVDHRVDRALAMLRPQAIADHRALLSSLGWPPPLSILASSNPETRASSE 244 (801)
Q Consensus 167 l~a~~~L~~~~~~~~~~~~~~~~~~--~Lv~~v~~~v~~~~~~Lr~~l~~~l~~~L~~l~WP~~~~~~~~~~~~~~~~~~ 244 (801)
-..-.+|.++..-|.-+..++..+. .++..+..|. -..+++++.+. |.+
T Consensus 147 ~~~a~~l~~m~~sL~~l~~~pd~~~r~~~le~l~nrL---Ea~vsp~Lv~a----l~~---------------------- 197 (766)
T PF10191_consen 147 AKIADRLAEMQRSLAVLQDVPDYEERRQQLEALKNRL---EALVSPQLVQA----LNS---------------------- 197 (766)
T ss_pred HHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH---HHHhhHHHHHH----HHh----------------------
Confidence 2345666666655555555554332 2222222222 12333333222 110
Q ss_pred cCCcccccccchHHHHHHHHHHHhhhhhhhhhhhhhhhccCccccccCCchhhHHHhHhhHHHhccccccccccCccchH
Q 003707 245 VSNPLFTMRGDLKHQYCENFLALCRLQELQRQRKSRQLEGHNRELALHQPLWAIEELVNPIAVASQHHFSKWTDKPEFIF 324 (801)
Q Consensus 245 ~~~pl~~~~~~~~~~~~~~f~~L~~LQ~~~~~~~~~~~~~~~~~~~~~~~Lw~i~~Lv~P~~~RF~YHF~NrldKPEw~f 324 (801)
...+.-..|.+.|..+-.+.....- +..... ..-...|---+-.. -. .-|.+|+ |+ ||
T Consensus 198 -------~~~~~~~~~~~if~~i~R~~~l~~~--Y~~~r~-----~~l~~~W~~~~~~~-~~----~~~~~~L--~~-fy 255 (766)
T PF10191_consen 198 -------RDVDAAKEYVKIFSSIGREPQLEQY--YCKCRK-----APLQRLWQEYCQSD-QS----QSFAEWL--PS-FY 255 (766)
T ss_pred -------cCHHHHHHHHHHHHHcCCHHHHHHH--HHHHHH-----HHHHHHHHHHhhhc-cc----hhHHHHH--HH-HH
Confidence 0112333344444433222222211 100000 00011221000000 00 1222333 22 34
Q ss_pred HHHHHHHHhhHHhHHhhhHHHHHhccccccchHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccchhhhHHHHHH
Q 003707 325 TLVYKITRDYVDSMDELLQPLVDEALLVGYSCREEWISAMVTALLTYLAKEIFPVYVDQLDEESISGVQSQARISWLHLV 404 (801)
Q Consensus 325 ~~vl~~i~~~~~fl~~~lqp~l~~~~~~~~~~~~efi~~ll~~l~~kL~~~i~p~l~~~~~d~~~~~~~~~~~sl~~HlI 404 (801)
..++..++....+...++.+- +.....++...+..+-+-+...| .... + .+.....+..++-+-
T Consensus 256 d~ll~~l~~E~~w~~~vF~~~--------~~~~~~ll~~~L~~L~PS~~~~l-~~al---~----~~~~~~~L~~L~~l~ 319 (766)
T PF10191_consen 256 DELLSLLHQELKWCSQVFPDE--------SPVLPKLLAETLSALQPSFPSRL-SSAL---K----RAGPETKLETLIELY 319 (766)
T ss_pred HHHHHHHHHHHHHHHHHcCCc--------hhHHHHHHHHHHHhcCccHHHHH-HHHH---h----hcCchhhHHHHHHHH
Confidence 666666666666654332221 11233333333333333333333 1111 1 001110123333444
Q ss_pred HHHHHHHHHHHHhhccCCcccccccCCccCcc-cce-EeecCCchHHHHHHHHHHHHHHHHHHHhhccCCCccccccccc
Q 003707 405 DLMISFDKRIKSLVEQSGILFSLQEDGNLQKI-SSL-SVFCDRPDWLDIWAQIELADTLENLKHDVDDERNWKMKVQKGA 482 (801)
Q Consensus 405 dE~l~FD~~Lr~~~~y~~~~~~~~~~~~w~gl-s~~-~vl~~~~~~f~~Wl~~E~~~A~~r~~~Ii~s~daw~i~~d~~~ 482 (801)
.-...|=+.+...+.-.... .+ -..+ .++ .|+.-=..+..+--++|+++-...+..|....+ . ..+..
T Consensus 320 ~~t~~Fa~~l~~~l~~~~~~----~~--l~~~~~l~~al~~PF~~~q~~Yg~lE~~~L~~~L~~l~~~~~--~--~~d~v 389 (766)
T PF10191_consen 320 QATEHFARNLEHLLSSLPGE----SN--LSKVEELLQALFEPFKPYQQRYGELERRFLSAQLSALDLESA--E--LSDAV 389 (766)
T ss_pred HHHHHHHHHHHHHHhccccc----cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC--c--HHHHH
Confidence 44566667666665432110 00 0000 111 122201267777888999999999887644322 1 10100
Q ss_pred ccCCCCCCCCChhHHHHHHHHHHHHhhccCCCChhhHHHHHHHhchHHHHHHHHHHHHHHHhhh---hhhcc-cC----c
Q 003707 483 LLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPVIQKFLDCVLLRCQEAE---GLTAL-TD----E 554 (801)
Q Consensus 483 ~~~~~~~~K~p~~A~~~~~LL~~iteRy~~L~~~~~rl~Fl~~iql~lLd~f~~rL~~~~~a~~---~~~~~-~g----~ 554 (801)
..+ ..+...+..+++.-.+||..+..-..=.-++..+ -.++..|.+.+...++... +.... .+ +
T Consensus 390 -----~~L--~~s~~k~f~lae~Av~RC~~fT~G~~~~~Ll~Al-d~~~~~y~~~~~~~l~~lr~~~~~~~~~~~~~~~e 461 (766)
T PF10191_consen 390 -----RRL--EESIPKLFGLAEEAVDRCIAFTGGYGVPGLLKAL-DSIFSQYLSSLTATLRSLRKSCGLDSTATSSASSE 461 (766)
T ss_pred -----HHH--HHhHHHHHHHHHHHHHHHHHHhCCccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCcccccccccc
Confidence 111 3466678888898889998877544344455555 4555666555543333221 11100 00 1
Q ss_pred --hhHHHHHHHHhhHHHHHHHHHhhcCCchhHHhhHHhhhHhh-hhcCC-------------CCC----------CC---
Q 003707 555 --DGLLKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLE-TSLSD-------------NSR----------SE--- 605 (801)
Q Consensus 555 --~~l~rl~~~~nSa~yi~~~L~eWsed~~FleL~~~~~~r~~-~~~~~-------------~~~----------s~--- 605 (801)
.....-.+++..+.=+...+.++...+. ..|-.... ++. .+.++ .+. ..
T Consensus 462 DWs~fQ~aL~LL~~~g~l~~rl~~fE~~l~-~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 539 (766)
T PF10191_consen 462 DWSLFQNALQLLQTCGELLSRLSQFEQSLR-SRLLELAS-KLLSSSFSSSSDTGEAASGDTRSSSPNPWKGYNYLAASRL 539 (766)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-hhcccccCCccccccccccccCcccccchHHHHhhccccH
Confidence 2344556667677777777776655432 22211111 000 00000 000 00
Q ss_pred -------------CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc--cc------ccc
Q 003707 606 -------------WPVGGSRSGIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQEK--SE------ENW 664 (801)
Q Consensus 606 -------------~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~~~~lr~Y~~~~~~w~~~--~~------~~~ 664 (801)
...+++..++|.+..+...++.......+-+.+..-|+..++.|.+ ...|... +. ...
T Consensus 540 ~e~~~~~~~l~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~v~d~l~~~i~~~L~~vp~-~~~W~~~~~~~~~~~~LP~F 618 (766)
T PF10191_consen 540 AELPNKAEDLQSLSEQASPSFSLLPEARAAVSRLNQQAQDLVFDVLFSPIRQQLKSVPS-LPSWSSAGVGETSTLDLPSF 618 (766)
T ss_pred HHHHHHHHHHHHhhhccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-CcccccCCccccccCCCCcc
Confidence 0112245689999999999999999999999999999999999988 5677652 11 112
Q ss_pred CCCH-----hHHHHHHHHHHHHHHHHhcc-------------C--H---------HHHHHHHH-HHHHHHHHHHHHhhhc
Q 003707 665 SVSE-----MLVGALDYLQGKMSIIEGSL-------------N--A---------MDFIMVWR-SLATGVDRLLFRGILM 714 (801)
Q Consensus 665 ~~S~-----el~~~L~~L~~~L~~L~~~L-------------~--~---------~~f~~i~r-~ia~~l~~~L~~~Il~ 714 (801)
+.|| .+-+-|-.|+.+|.-+...- + + ..+...|= .|+......+.+.|..
T Consensus 619 S~~P~eyIT~IGeyLLtLPq~LEp~~~~~~~al~~Al~~~~~~~~~~~~~~~~~~~~~~~~wl~~va~~~~~~~~~~i~~ 698 (766)
T PF10191_consen 619 SLSPQEYITQIGEYLLTLPQQLEPFAESDNSALAFALHAGKLPYPPESDEEAEEADDFADEWLGKVARATCALYLEQILE 698 (766)
T ss_pred ccChHHHHHHHHHHHHhhHHhhhhhhcCcchHHHHHHHhcCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222 22334445555554332211 0 1 14555664 4555667777777777
Q ss_pred cCcccchhhHhHHHHHHHHHHHHHhhhhcCCCCchhhHHHHHHccCCChHHHHHhhh
Q 003707 715 SNAKFYDGGVVRFGCDMEVLFGVFRAWCLRPEGFFPKTSEGLKLLKMREEQLQGGVL 771 (801)
Q Consensus 715 ~n~~Fs~~Ga~Qf~~D~~~L~~~f~~~~~rpe~~f~~l~Ea~~LL~l~~~~l~~~l~ 771 (801)
- ...|..|+.||..|++.|+.|++.....|. +.|..-..+|+.+.++..+..+
T Consensus 699 i-~~l~~~~~~QL~~Di~Yl~nVl~aLg~~~~---~~L~~~~~ll~~~~~~~~~~~~ 751 (766)
T PF10191_consen 699 I-PELSESGAKQLATDIDYLSNVLSALGLSPP---PNLQQLVTLLKAPPDQYAQVAK 751 (766)
T ss_pred c-ccCCHHHHHHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCHHHHHHHHh
Confidence 4 599999999999999999999998766666 7788888899999988766644
No 7
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.049 Score=63.91 Aligned_cols=304 Identities=12% Similarity=0.175 Sum_probs=182.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCCcccccccccccCCCCCCCCChhHHHHHHHHHHHHhhccCCCChhhHHHHHHHh
Q 003707 447 DWLDIWAQIELADTLENLKHDVDDERNWKMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLA 526 (801)
Q Consensus 447 ~~f~~Wl~~E~~~A~~r~~~Ii~s~daw~i~~d~~~~~~~~~~~K~p~~A~~~~~LL~~iteRy~~L~~~~~rl~Fl~~i 526 (801)
+.+...+.+|.=|..+-....+.-++ |++. +...+-.-+.++=++..-..|--.=.+++.=..|+...
T Consensus 426 el~~~y~~LE~yfm~esv~kAi~ld~-----ye~~-------~~~~SSmVDDV~yivrk~irRA~~T~si~~~~a~iN~~ 493 (773)
T KOG0412|consen 426 ELIRNYLLLEEYFMLESVQKAIKLDE-----YEDA-------GQLTSSMVDDVFYIVRKCIRRALSTSSIDSLCAFINEA 493 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-----cccC-------CcchhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45556666666666666655444332 2110 11223344555666666666655555666667777775
Q ss_pred chHHHHH-HHHHHHHHHHhhhhh---------------hc--ccCchhHHHHHHHHhhH----HHHHHHHHhhcCCchhH
Q 003707 527 GAPVIQK-FLDCVLLRCQEAEGL---------------TA--LTDEDGLLKVANCVNAA----HYFESVLREWCEDVFFL 584 (801)
Q Consensus 527 ql~lLd~-f~~rL~~~~~a~~~~---------------~~--~~g~~~l~rl~~~~nSa----~yi~~~L~eWsed~~Fl 584 (801)
.++|+. |+..|.+.+..+++- .. ...+.+.+.+.-.+|++ .||....+.-.++
T Consensus 494 -~~~l~ndf~~~L~~kLrs~~~~~~sa~N~i~s~lq~~k~~~~d~d~~~~~fl~~LNn~~ls~eyi~~L~~~le~~---- 568 (773)
T KOG0412|consen 494 -TALLDNDFLVALQSKLRSIQGGAASALNIIQSSLQAGKAEDEDADLAKENFLTALNNADLSKEYIHTLKKTLESD---- 568 (773)
T ss_pred -HHHhcchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhccCcchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----
Confidence 677764 777777666522110 00 11344666666667665 3444433222111
Q ss_pred HhhHHhhhHhhhhcCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-------
Q 003707 585 EMALDQDNQLETSLSDNSRSEWPVGGSRSGIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQ------- 657 (801)
Q Consensus 585 eL~~~~~~r~~~~~~~~~~s~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~~~~lr~Y~~~~~~w~------- 657 (801)
.. ++-+ .+.+...++..+..++++..+..+..-.-+..-|...++|=++. |-
T Consensus 569 -----~~-----~vf~--------~~~d~~~l~~~l~~l~~l~~~f~~L~k~g~~~Lf~~~lkpRi~~---~id~f~~is 627 (773)
T KOG0412|consen 569 -----CT-----EVFP--------QNFDRAKLKSCLSNLEALSLKFKDLLKWGMEQLFSTVLKPRIRP---WIDTFVNIS 627 (773)
T ss_pred -----HH-----HhcC--------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhh---hhhhhhhhh
Confidence 10 1100 01134466666777777666655533333444444444444432 31
Q ss_pred -----cccccccCCCHhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhhhccCcccchhhHhHHHHHHH
Q 003707 658 -----EKSEENWSVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDME 732 (801)
Q Consensus 658 -----~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~L~~~Il~~n~~Fs~~Ga~Qf~~D~~ 732 (801)
++......--|=....+..+-..+.-++..|.|..+..+---+++.|..+|=. +++.. +||+-||.||..|+.
T Consensus 628 ~~ls~edy~~~ea~d~~Vq~fl~~v~~l~~~~k~~ltp~nY~sLlsl~~~~ia~~LE~-~i~k~-~FNrlG~lqLDre~r 705 (773)
T KOG0412|consen 628 YNLSEEDYAAYEANDPWVQQFLSSVEQLLAELKNSLTPENYDSLLSLIVDEIATQLEQ-IIWKI-QFNRLGGLQLDRELR 705 (773)
T ss_pred ccccHHHHhhhccCChHHHHHHHHHHHHHHhhhcccChhhHHHHHHHHHHHHHHHHHH-HHHHh-HHHhhcchHhhHHHH
Confidence 01111112234555778888888888899999999999999999999888874 44434 999999999999999
Q ss_pred HHHHHHhhhhcC-CCCchhhHHHHHHccCCChHHHHHhhhchHhHHHhhCCC------ccCHHHHHHHHHhccc
Q 003707 733 VLFGVFRAWCLR-PEGFFPKTSEGLKLLKMREEQLQGGVLGGEKWMKQSGIT------HLSVAEAEKIEKNRVF 799 (801)
Q Consensus 733 ~L~~~f~~~~~r-pe~~f~~l~Ea~~LL~l~~~~l~~~l~~~~~~L~elgI~------~Ls~~ea~~vL~rRv~ 799 (801)
+|++.|..-+.. --.-|.||.+.+.||+++..+ ..++..|.. +||++|+++||..|+.
T Consensus 706 ~lis~lt~~t~~~lRdKf~RLtQIatLLnle~~s---------e~le~w~~~~g~~twrLt~~EVr~vl~lr~d 770 (773)
T KOG0412|consen 706 ALISYLTGVTQWNLRDKFARLTQIATLLNLEKDS---------EILEYWGPNSGPLTWRLTPAEVRKVLALRID 770 (773)
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHcccccc---------hHHHhcCCCCCCceEEeCHHHHHHHHHhhcc
Confidence 999988732222 114699999999999987654 223333333 4999999999999975
No 8
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=97.45 E-value=0.0019 Score=70.91 Aligned_cols=211 Identities=16% Similarity=0.169 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCc-hhHHHHHHHHhhHHHHHHHHHhhcCCchhHHhhHHhhhHhhhhcCCCCCCCCC
Q 003707 529 PVIQKFLDCVLLRCQEAEGLTALTDE-DGLLKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLETSLSDNSRSEWP 607 (801)
Q Consensus 529 ~lLd~f~~rL~~~~~a~~~~~~~~g~-~~l~rl~~~~nSa~yi~~~L~eWsed~~FleL~~~~~~r~~~~~~~~~~s~~~ 607 (801)
+++.++.++|+.+.-. +.+.+.-.. .+++.++.++..+.|++.++.++++- +..+. +.+.
T Consensus 64 ~~v~ks~d~lL~~~l~-~~L~~~i~~~~~l~qi~Qi~iNl~~le~Ac~~le~~---------l~~~~--~~~~------- 124 (311)
T PF04091_consen 64 DIVRKSLDRLLTRVLN-GSLKSKIRSSLNLSQIVQIVINLEYLEKACKELEEF---------LSSLR--GIPQ------- 124 (311)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHT-TS-HHHHHHHHHHHHHHHTTHHHHHHH---------HHHHH--T----------
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhcCCCHHHHHHHHHhHHHHHHHHHHHHHH---------HHHHc--CCCc-------
Confidence 4556666666544111 112121122 59999999999999999999875432 21110 0100
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCHhHHHHHHHHHHHHHHHHhc
Q 003707 608 VGGSRSGIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQEKSEENWSVSEMLVGALDYLQGKMSIIEGS 687 (801)
Q Consensus 608 ~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~~~~lr~Y~~~~~~w~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~ 687 (801)
+..+.+=-...+.|...++.+++.|...+..-+.+-+- -.. -.|++.+ .+..+|.-+...+..|+..++..-..
T Consensus 125 --~~~~~~~l~a~~~f~~~r~~Ae~~I~~lv~~KIDe~le-la~--yDW~~~~-~~~~ps~yi~dli~fL~~~f~s~l~~ 198 (311)
T PF04091_consen 125 --SAGGHIRLKATKMFKDARKAAEKRIFELVNSKIDEFLE-LAE--YDWTPTE-PPGEPSDYINDLIQFLETTFSSTLTN 198 (311)
T ss_dssp ---------------S---TTHHHHHHHHHHHHHHHHHHT-T----TT---------S--HHHHHHHHHHHHHHHTTTTT
T ss_pred --cchHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcc--cceecCC-CCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 00011112223455566777888888877777777772 221 2487655 34468999999999999999888889
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhhccC-cccchhhHhHHHHHHHHHHHHHhhh----hcCC--CCchhhHHHHHHccC
Q 003707 688 LNAMDFIMVWRSLATGVDRLLFRGILMSN-AKFYDGGVVRFGCDMEVLFGVFRAW----CLRP--EGFFPKTSEGLKLLK 760 (801)
Q Consensus 688 L~~~~f~~i~r~ia~~l~~~L~~~Il~~n-~~Fs~~Ga~Qf~~D~~~L~~~f~~~----~~rp--e~~f~~l~Ea~~LL~ 760 (801)
||+.....+..+.+..|.+.|++-++..+ .+||.+|+.||..|+..|-.....- .+.+ ...|-.+++.+.||.
T Consensus 199 LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvdLl~ 278 (311)
T PF04091_consen 199 LPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLPVPGNNIPSLRETFAELRQLVDLLL 278 (311)
T ss_dssp SH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999888765532 4899999999999999886665432 0222 258999999999987
Q ss_pred CChH
Q 003707 761 MREE 764 (801)
Q Consensus 761 l~~~ 764 (801)
-+..
T Consensus 279 s~~~ 282 (311)
T PF04091_consen 279 SDDW 282 (311)
T ss_dssp ----
T ss_pred cCCH
Confidence 5543
No 9
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=96.92 E-value=0.04 Score=65.59 Aligned_cols=427 Identities=13% Similarity=0.140 Sum_probs=181.6
Q ss_pred hHHHhHhhHHHhccccccccccCccch---HHHHHHHHHhhHHhHHhhhHHHHHhccccccchHHHHHHHHHHHHHHHHH
Q 003707 297 AIEELVNPIAVASQHHFSKWTDKPEFI---FTLVYKITRDYVDSMDELLQPLVDEALLVGYSCREEWISAMVTALLTYLA 373 (801)
Q Consensus 297 ~i~~Lv~P~~~RF~YHF~NrldKPEw~---f~~vl~~i~~~~~fl~~~lqp~l~~~~~~~~~~~~efi~~ll~~l~~kL~ 373 (801)
-++++-.-+..||. .-..+...+.|. +..+- |+.+-...+.+.+.|++-. .+++..-|++..=..+...|.
T Consensus 82 ~~~~l~~sv~~~~~-~~~~~~~~~~~l~~~l~~l~-~~~~DL~~v~~~~~~cfPp----~~~I~~~y~~~YH~~l~~~l~ 155 (566)
T PF06046_consen 82 FFEALRESVEERFE-QAEEREENKSWLARHLEALR-WVLEDLQVVKDDVVPCFPP----EYDIFNTYVSMYHNALSDHLQ 155 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH-HhhhhccCchHHHHHHHHHH-HHHHHHHHHHHhCcccCCC----CChHHHHHHHHHHHHHHHHHH
Confidence 34555566666666 111223334555 55555 6666667777777777653 233334444433333333333
Q ss_pred hhhhhhhhhhhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhhccCCcccccc--cCCccCcccceEeecC--CchHH
Q 003707 374 KEIFPVYVDQLDEESISGVQSQARISWLHLVDLMISFDKRIKSLVEQSGILFSLQ--EDGNLQKISSLSVFCD--RPDWL 449 (801)
Q Consensus 374 ~~i~p~l~~~~~d~~~~~~~~~~~sl~~HlIdE~l~FD~~Lr~~~~y~~~~~~~~--~~~~w~gls~~~vl~~--~~~~f 449 (801)
.-+.+.+. . --+..++.|.+ .|++. +... .+..|.|+ +|.+ .+...
T Consensus 156 ~l~~~~l~----------------~---~~ll~ll~W~~------~Y~~~-m~~~~l~~~~~l~p----lL~~~~~~~L~ 205 (566)
T PF06046_consen 156 ELISPDLE----------------A---NDLLSLLSWVN------TYPSI-MGHPDLAIKEQLGP----LLPDEKLEELE 205 (566)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred HHccCCCC----------------H---HHHhhheechh------hChHh-hcCCcccchhhccC----CCChhHHHHHH
Confidence 21211111 1 33556777744 34331 1100 00122221 2321 14566
Q ss_pred HHHHHHHHHHHHHHHHHhhccC-CCcccccccccccCCCCCCCCChhHHHHHHHHHHHHhhccCCCChhhHHHHHHHhc-
Q 003707 450 DIWAQIELADTLENLKHDVDDE-RNWKMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAG- 527 (801)
Q Consensus 450 ~~Wl~~E~~~A~~r~~~Ii~s~-daw~i~~d~~~~~~~~~~~K~p~~A~~~~~LL~~iteRy~~L~~~~~rl~Fl~~iq- 527 (801)
+.+++..+..-.+=++.|+..+ +.|.- +..|..+.++.=-|..+..+..+++.-.+-- +-+.+-+++..+-
T Consensus 206 ~~Yl~~~~~~~~eW~~n~l~~E~~~w~~---~~~Pe~~~dg~y~t~~~~difqmi~qql~va----~~~l~~~v~~~v~~ 278 (566)
T PF06046_consen 206 DDYLSRIQKKMKEWMDNILEQEVKDWSE---EKEPEEDEDGYYHTPLPVDIFQMINQQLDVA----SESLQGKVLQRVLE 278 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----S--EE-TTS-EE-HHHHHHHHHHHHHHHHH----HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCCcCCCCCeecCcHHHHHHHHHHHHHHH----HhhhhhhHHHHHHH
Confidence 7777777777777777777654 34532 2223223344444778899999988754444 2233334443331
Q ss_pred --hHHHHHHHHHHHHHHHhh-hh---hhcccC-chhHHHHHHHHhhHHHHHHHHHhhcCCchhHHhhH-HhhhHhhhhcC
Q 003707 528 --APVIQKFLDCVLLRCQEA-EG---LTALTD-EDGLLKVANCVNAAHYFESVLREWCEDVFFLEMAL-DQDNQLETSLS 599 (801)
Q Consensus 528 --l~lLd~f~~rL~~~~~a~-~~---~~~~~g-~~~l~rl~~~~nSa~yi~~~L~eWsed~~FleL~~-~~~~r~~~~~~ 599 (801)
..++..|.+.+....+.. .. .....+ ..-.+.+|.++|.+..+..-+....... .+... ...
T Consensus 279 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eyliA~~N~~~~~~~~~~~l~~~~--~~~~~~~~~-------- 348 (566)
T PF06046_consen 279 ELANFLKSYQDAWQEFKEEHFKDRSSVKPKENPPGYLEYLIAVANNCLRCRDYVESLEQKF--EEKVSQKYM-------- 348 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--S-HHHHHHHHHHHHHHHHHHHHHHHHHH--HTTS-HHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchHHHHHHHhccHHHHHHHHHHHHHhc--ccccchHHH--------
Confidence 345555555554433211 10 000011 3456778999998877766333321110 00000 000
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCHhHHHHHHHHHH
Q 003707 600 DNSRSEWPVGGSRSGIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQEKSEENWSVSEMLVGALDYLQG 679 (801)
Q Consensus 600 ~~~~s~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~~~~lr~Y~~~~~~w~~~~~~~~~~S~el~~~L~~L~~ 679 (801)
.....-|++....|..+.+.+...+++.+...++..++.-+.. .|-.. ..+...+.++..
T Consensus 349 ----------~~~~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~~Lft~--~W~~~--------~~~~~I~~Ti~d 408 (566)
T PF06046_consen 349 ----------ERISSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHFKKLFTK--KWYSG--------EAVDTICATIED 408 (566)
T ss_dssp ----------HHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHHCTTTSG--GGCTS---------HHHHHHHHHHH
T ss_pred ----------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCcC--cCcCc--------chHHHHHHHHHH
Confidence 0113467888999999999999999999988877766666653 35422 456677888999
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhhhccCccc-----chhhHhHHHHHHHHHHHHHhhhhcCCC--CchhhH
Q 003707 680 KMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMSNAKF-----YDGGVVRFGCDMEVLFGVFRAWCLRPE--GFFPKT 752 (801)
Q Consensus 680 ~L~~L~~~L~~~~f~~i~r~ia~~l~~~L~~~Il~~n~~F-----s~~Ga~Qf~~D~~~L~~~f~~~~~rpe--~~f~~l 752 (801)
++..++..|.+..|..+...+...+..-....++.++.+| ...++.|+..|...+...|..|..... ..|..+
T Consensus 409 Y~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~~~~~~~~~~~~~l 488 (566)
T PF06046_consen 409 YLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQLKSFFSKLGSKSEVKSSFDVL 488 (566)
T ss_dssp HHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH
Confidence 9999999999999999999999998766666677755455 679999999999999999998872211 345666
Q ss_pred HHHHHccCCChHH-HH----Hhhh---c--hHhHHHhhCCCc-cCHHHHHHHHHh
Q 003707 753 SEGLKLLKMREEQ-LQ----GGVL---G--GEKWMKQSGITH-LSVAEAEKIEKN 796 (801)
Q Consensus 753 ~Ea~~LL~l~~~~-l~----~~l~---~--~~~~L~elgI~~-Ls~~ea~~vL~r 796 (801)
...+.++.+...+ +. ..+. + ..-+..=+.++. ++.++++.++..
T Consensus 489 ~~l~~ll~~~d~~~i~l~~~~l~~~ypD~~~~~v~alL~~R~D~~r~~~~~il~~ 543 (566)
T PF06046_consen 489 EDLLELLRLEDPEMIKLEVSSLLQKYPDISEEHVEALLALRGDLSRSEVKEILEI 543 (566)
T ss_dssp HHHHHHH-HS-CCCHHHHHHHHHCC-TT--SHHHHHHHCT-TT--HHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 6666666433322 21 1111 1 122222245554 888888887763
No 10
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=96.44 E-value=3.1 Score=49.53 Aligned_cols=283 Identities=16% Similarity=0.136 Sum_probs=177.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh--ccCCCcccccccccccCCCCCCCCChhHHHHHHHHHHHHhhccCC--CChhhHH--
Q 003707 447 DWLDIWAQIELADTLENLKHDV--DDERNWKMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSL--PTVSLRS-- 520 (801)
Q Consensus 447 ~~f~~Wl~~E~~~A~~r~~~Ii--~s~daw~i~~d~~~~~~~~~~~K~p~~A~~~~~LL~~iteRy~~L--~~~~~rl-- 520 (801)
....+|+++=|+-|+.|++..+ +.+. ++..+++-..++....-.|+.|++-...| |......
T Consensus 617 p~ik~w~~V~k~kAl~Rv~~a~~mD~~~------------~~~~~~RhSSS~~d~~~~l~~i~efW~rl~wpD~~~ai~~ 684 (1103)
T KOG1328|consen 617 PGIKKWLEVAKEKALARVHLACQMDMPI------------STSSDMRHSSSHIDICHILEQITEFWERLDWPDAGLAIEY 684 (1103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcc------------ccchhhccccchhhHHHHHHHHHHHHHHcCCCChhHHHHH
Confidence 3568999999999999998754 3332 22346666778888899999999888776 4444443
Q ss_pred --HHHHHhchHHHHHHHHHHHHHHHhhhhhhcccCchhHHHHHHHHhhHHHHHHHHHhhcCCchhHHhhHHhhhHhhhhc
Q 003707 521 --RFLRLAGAPVIQKFLDCVLLRCQEAEGLTALTDEDGLLKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLETSL 598 (801)
Q Consensus 521 --~Fl~~iql~lLd~f~~rL~~~~~a~~~~~~~~g~~~l~rl~~~~nSa~yi~~~L~eWsed~~FleL~~~~~~r~~~~~ 598 (801)
|.+..| ....--|-+-|.+..--.|-..+--...-..-+|.++|.+.||...|-. .+=..+|..-
T Consensus 685 ~~QL~dvV-Cea~~~Yt~li~sa~~dtq~~~a~~p~~~s~~lCv~iNNvE~VRrsl~~----~~k~~~~p~~-------- 751 (1103)
T KOG1328|consen 685 TRQLVDVV-CEAVTVYTQLIISAEGDTQELQAFIPSQLSHLLCVAINNVEQVRRSLNI----TEKLHMDPRS-------- 751 (1103)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhhcccchhhhcChHHHHHHHHHHHccHHHHHHHHhH----HhhhccCccc--------
Confidence 333334 5555566666653211011100000123457799999999999988832 1222233210
Q ss_pred CCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcccccccccccccCCCHhHHHHHH
Q 003707 599 SDNSRSEWPVGGSRSGIFDEEIKKLEEFRTEWV---EKISVVILRGFDALSRDYVKNRRQWQEKSEENWSVSEMLVGALD 675 (801)
Q Consensus 599 ~~~~~s~~~~~~~~~siFde~i~~y~~l~~~~~---~~iv~~v~~~~~~~lr~Y~~~~~~w~~~~~~~~~~S~el~~~L~ 675 (801)
-.++++-+=.+.-+..+....++. +.|+..+..-....++.|+- --.|++++ ..+-..+.|.+.
T Consensus 752 ---------~~~~~~~l~~~~~n~les~~~~~~~e~~ri~~~Lt~~m~~~~~K~vf-HlawSPds---~~~~~a~~PL~~ 818 (1103)
T KOG1328|consen 752 ---------RLNGNHMLKSEIENRLESCESNICSEIDRIVGLLTERMLPQMKKHVF-HLAWSPDS---QLVEDALKPLTD 818 (1103)
T ss_pred ---------ccCccccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHH-heecCccc---cchhhhHHHHHH
Confidence 112333333344444555555444 45566666677778888887 35687554 234567889999
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhhhccCcccchhhHhHHHHHHHHHHHHHhhhhcC------CCCch
Q 003707 676 YLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLR------PEGFF 749 (801)
Q Consensus 676 ~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~L~~~Il~~n~~Fs~~Ga~Qf~~D~~~L~~~f~~~~~r------pe~~f 749 (801)
+|-..|..|.++|-..-|.++-+.+-+.+-..|.+.+ ..|.--+..=-..|..-+..|...|..-..- -.+.|
T Consensus 819 yLD~~La~ln~~Ll~~Nf~Rvl~a~w~~vl~~l~~~~-g~n~d~~~~Fy~Rl~eal~~Lv~FFHAeGqGL~le~L~t~~~ 897 (1103)
T KOG1328|consen 819 YLDIELASLNKNLLHRNFLRVLSAQWSIVLKLLRECV-GENVDMEPAFYHRLFEALHVLVEFFHAEGQGLSLEALDTNPE 897 (1103)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-cccCCCChHHHHHHHHHHHHHHHHHhccCCCcchHhhccCcH
Confidence 9999999999999999999888777777766664433 2254444444455666666677767632110 11567
Q ss_pred hhHHHHHHccCCChHHHHH
Q 003707 750 PKTSEGLKLLKMREEQLQG 768 (801)
Q Consensus 750 ~~l~Ea~~LL~l~~~~l~~ 768 (801)
.+|.+-+.|=..+.+++.+
T Consensus 898 ~rl~~~L~lhkt~T~~lIe 916 (1103)
T KOG1328|consen 898 HRLVKILSLHKTPTEQLIE 916 (1103)
T ss_pred HHHHHHHHhcCCCHHHHHH
Confidence 8899999988888888554
No 11
>PF14923 CCDC142: Coiled-coil protein 142
Probab=96.11 E-value=0.12 Score=59.02 Aligned_cols=145 Identities=19% Similarity=0.124 Sum_probs=99.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--cccCCCHhHHHHHHHHHHHHHHHHhccCHHHH
Q 003707 616 FDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQEKSE--ENWSVSEMLVGALDYLQGKMSIIEGSLNAMDF 693 (801)
Q Consensus 616 Fde~i~~y~~l~~~~~~~iv~~v~~~~~~~lr~Y~~~~~~w~~~~~--~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f 693 (801)
..+.++..+.+-.+....+.....+.-.+.+..++=....|-.... -+..+|.-....+..+-.-.-.--+.|++..-
T Consensus 222 i~~~~~~Lq~~s~e~~~~f~~~C~~~s~~~f~~~mP~g~~WR~~~~~~lP~~pS~Yv~~~v~~vl~PVl~g~q~L~~~aq 301 (450)
T PF14923_consen 222 IQENIAKLQSLSSECLRLFSQDCRKMSLAIFELCMPSGRYWRRSLSPELPSAPSEYVEYVVETVLEPVLQGVQGLPPEAQ 301 (450)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCcchhcccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 3444555555555555555555555555556656655566754332 23455655555555444333333447888888
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCcccchhhHhHHHHHHHHHHHHHhh--hhcCCC--------CchhhHHHHHHccC
Q 003707 694 IMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRA--WCLRPE--------GFFPKTSEGLKLLK 760 (801)
Q Consensus 694 ~~i~r~ia~~l~~~L~~~Il~~n~~Fs~~Ga~Qf~~D~~~L~~~f~~--~~~rpe--------~~f~~l~Ea~~LL~ 760 (801)
..+-..++..+.....+.|++...|||..||.|+..|+..+...+.. +.-.|+ ..|+++.-++++|-
T Consensus 302 ~~~l~~~l~a~~eAWLdhIl~~kIKFS~~GAlQL~~DF~~Vr~wl~~e~~~Ls~e~rq~Ll~l~v~r~~dgv~~lLl 378 (450)
T PF14923_consen 302 IPALSQALTAMLEAWLDHILMHKIKFSLQGALQLRQDFGYVRDWLESECSGLSPELRQTLLSLEVFRRCDGVGLLLL 378 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccceeeHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88999999999999999999977899999999999999988888765 444444 46888888888884
No 12
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=95.18 E-value=10 Score=45.69 Aligned_cols=444 Identities=15% Similarity=0.145 Sum_probs=218.7
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHHHHHHhHhhhcc
Q 003707 108 LGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAVSSAMNNNRRSNSTQDSEDMRLLAIKALKQAEDILTSVTKTR 187 (801)
Q Consensus 108 l~~~l~~l~~~l~~le~~~~Y~~~~~~~e~l~~d~e~~~~s~~~~~~~~~~~~~~~~~al~a~~~L~~~~~~~~~~~~~~ 187 (801)
..+++..+.+++++.+.+..-++.+.+++++.+.++.++ . . ..-+.|...|.++...+..+....
T Consensus 81 a~~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al----~--------~---~~~~~Aa~~L~~~~~~L~~l~~~~ 145 (593)
T PF06248_consen 81 AAEELQELKRELEENEQLLEVLEQLQEIDELLEEVEEAL----K--------E---GNYLDAADLLEELKSLLDDLKSSK 145 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h--------c---CCHHHHHHHHHHHHHHHHhcCcCc
Confidence 468899999999999999999999999998877776531 0 1 223455566666553333332222
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCCCCCcccCCCccccCc-cccCCcccccccchHHHHHHHHH
Q 003707 188 PQWARLVAAVDHRVDRALAMLRPQAIADHRALLS-SLGWPPPLSILASSNPETRAS-SEVSNPLFTMRGDLKHQYCENFL 265 (801)
Q Consensus 188 ~~~~~Lv~~v~~~v~~~~~~Lr~~l~~~l~~~L~-~l~WP~~~~~~~~~~~~~~~~-~~~~~pl~~~~~~~~~~~~~~f~ 265 (801)
..-+.++..+..+. ..+|..+...|....+ .+.|..+......+.....+. ..+. .++....+.+...
T Consensus 146 ~~~~~i~~~Lk~e~----~~lr~~L~~~L~~~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs------~~~~~~~L~~vl~ 215 (593)
T PF06248_consen 146 FEELKILKLLKDEY----SELRENLQYQLSEEWERLVQWDSPSSKQLSSPESTLKVTLHVS------KSESQESLQDVLQ 215 (593)
T ss_pred ccccHHHHHHHHHH----HHHHHHHHHHHHHHHHhheeecCCCcccccccccceEEEEEee------cCcccchHHHHHH
Confidence 22245555444544 3455555555555544 468976443111100000000 0001 1111112333333
Q ss_pred HHhhhhhhhhhhh-h-hhhccCcccc-ccCCchh-hHHHhHhhHHHhccccccc---cccC--ccchHHHHHHHHHhhHH
Q 003707 266 ALCRLQELQRQRK-S-RQLEGHNREL-ALHQPLW-AIEELVNPIAVASQHHFSK---WTDK--PEFIFTLVYKITRDYVD 336 (801)
Q Consensus 266 ~L~~LQ~~~~~~~-~-~~~~~~~~~~-~~~~~Lw-~i~~Lv~P~~~RF~YHF~N---rldK--PEw~f~~vl~~i~~~~~ 336 (801)
.|-.|-.+...-+ - +.+-.+-..| -.+|... ..+..-.+. .++.-.|.. ...+ |+=.|..+..++ .
T Consensus 216 AL~~lg~L~~~l~~~~~~Ll~~ii~PlI~~p~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~V~~~l~~vf----~ 290 (593)
T PF06248_consen 216 ALEILGILDYKLKKFSKFLLEHIIKPLISHPSSIVSVEESEDGS-VEITLSYEPDSSKDKRPSPKEVFSNLLLVF----E 290 (593)
T ss_pred HHHHhCchhHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCCc-ceEEEEeecccccccCCCHHHHHHHHHHHH----H
Confidence 3333323321100 0 0000000000 0000000 001100100 112222321 1122 344555554333 2
Q ss_pred hHHhhhHHHHHhccccccchHHHHHHHHHHHHHHHHHhh-hhhhhhhhhhhhhhhcccchhhhHHHHHHHHHHHHHHHHH
Q 003707 337 SMDELLQPLVDEALLVGYSCREEWISAMVTALLTYLAKE-IFPVYVDQLDEESISGVQSQARISWLHLVDLMISFDKRIK 415 (801)
Q Consensus 337 fl~~~lqp~l~~~~~~~~~~~~efi~~ll~~l~~kL~~~-i~p~l~~~~~d~~~~~~~~~~~sl~~HlIdE~l~FD~~Lr 415 (801)
|+...+- .. .........-|-..+.+.+.+.|-.+ +.|.++ .....+.-|.-++..+..|.+.|.
T Consensus 291 fL~~~L~---~~-~~~~~~l~~~~g~~i~~~ls~~lI~~~L~~aiP----------~~~~~l~~f~~v~~~~~~Fe~~L~ 356 (593)
T PF06248_consen 291 FLHQHLL---SL-PSSDSSLSESFGDHIWPRLSELLISNCLSPAIP----------TSASELQEFEEVLESVEEFEEALK 356 (593)
T ss_pred HHHHHhc---cc-CCchhHHHHHHHHHHHHHHHHHHHHhhCcCcCC----------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222221 10 00011123445556666666666443 223333 333344568899999999999999
Q ss_pred Hhhcc-CCcccccccCCccCcccceEeecCCchHHHHHH-HHHHHHHHHHHHHhhcc-------CCCccccc--c-----
Q 003707 416 SLVEQ-SGILFSLQEDGNLQKISSLSVFCDRPDWLDIWA-QIELADTLENLKHDVDD-------ERNWKMKV--Q----- 479 (801)
Q Consensus 416 ~~~~y-~~~~~~~~~~~~w~gls~~~vl~~~~~~f~~Wl-~~E~~~A~~r~~~Ii~s-------~daw~i~~--d----- 479 (801)
+. ++ ++. ..-+..|. +++.-|+.+|...|+.. +.-=.+.. +
T Consensus 357 ~l-gf~~~~----------------------~~~L~~~~~~i~~~f~~kr~~~iL~~AR~lm~~~~~~~v~V~~~~~~~~ 413 (593)
T PF06248_consen 357 EL-GFLSSD----------------------NTELSEFVDNIETHFANKRCQDILDKARDLMLRDLHDTVKVGPDSKAEL 413 (593)
T ss_pred Hc-CCcCCC----------------------chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccccceEecccccccC
Confidence 76 33 221 12333443 36666666666655542 21111100 0
Q ss_pred -c---------------c-ccc---------CCCCCCCCChhHHHHHHHHHHHHhhccCCCChhhHHHHHHHhchHHHHH
Q 003707 480 -K---------------G-ALL---------FGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLRLAGAPVIQK 533 (801)
Q Consensus 480 -~---------------~-~~~---------~~~~~~K~p~~A~~~~~LL~~iteRy~~L~~~~~rl~Fl~~iql~lLd~ 533 (801)
. . ... ---...+...+|..+++|+..+-.-- .-.+..--.++...+ -.+++-
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~c~IS~s~~~l~~L~~~~L~ea-~~~~~~~a~~l~~~~-r~i~~l 491 (593)
T PF06248_consen 414 PKLPSPGSSNKAKAKEESMSNENEDSLSPSLFQFPRCRISKSAQELVELAHQTLKEA-CKSSERCAAQLFQTA-RDIFEL 491 (593)
T ss_pred CCCCCCcccchhhcccchhcccCccccccccccCCcceechhHHHHHHHHHHHHHHH-hcCChhhHHHHHHHH-HHHHHH
Confidence 0 0 000 00123445688999999999744433 223333345556666 578888
Q ss_pred HHHHHHHHHHhhhhhhcccCchhHHHHHHHHhhHHHHHHHHHhhcCCchhHHhhHHhhhHhhhhcCCCCCCCCCCCCCCC
Q 003707 534 FLDCVLLRCQEAEGLTALTDEDGLLKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLETSLSDNSRSEWPVGGSRS 613 (801)
Q Consensus 534 f~~rL~~~~~a~~~~~~~~g~~~l~rl~~~~nSa~yi~~~L~eWsed~~FleL~~~~~~r~~~~~~~~~~s~~~~~~~~~ 613 (801)
|+.-.=..++.. +...+. .-+.-+|.+.|+.+.|...+.+ ... .++ ..-...
T Consensus 492 y~~~vP~~h~~~-----l~~ip~--~aalf~NdC~ylah~l~~l~~~---------~~~----~~~--------~~~~~~ 543 (593)
T PF06248_consen 492 YRAVVPVYHKKL-----LESIPQ--QAALFHNDCMYLAHHLLTLGHE---------YRS----KLP--------SPLKEI 543 (593)
T ss_pred HHHHccHHHHhh-----cccccH--HHHhHhcchHHHHHHHHHhHHH---------Hhh----cCc--------chhhhh
Confidence 876553221111 112222 3346689999999998887543 110 110 001126
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003707 614 GIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRD 648 (801)
Q Consensus 614 siFde~i~~y~~l~~~~~~~iv~~v~~~~~~~lr~ 648 (801)
+.|-+.+..|+++..++....+..-...+.+.+..
T Consensus 544 ~~f~d~v~~lr~~g~~~~~~q~~~q~~~l~~~l~~ 578 (593)
T PF06248_consen 544 ATFVDLVPRLRRLGEECFSAQMQRQRSQLLEILDG 578 (593)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999998888888876
No 13
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.92 E-value=0.36 Score=57.61 Aligned_cols=176 Identities=16% Similarity=0.211 Sum_probs=133.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcccccccccc-cccCCCHhHHHHHHHHHHHHHHH
Q 003707 613 SGIFDEEIKKLEEFRTEWVEKI-------SVVILRGFDALSRDYVKNRRQWQEKSE-ENWSVSEMLVGALDYLQGKMSII 684 (801)
Q Consensus 613 ~siFde~i~~y~~l~~~~~~~i-------v~~v~~~~~~~lr~Y~~~~~~w~~~~~-~~~~~S~el~~~L~~L~~~L~~L 684 (801)
...++++|..-..+.+.+...+ ++.+...++--+.+|.+ ...+.+++. .....++......+.|..++..|
T Consensus 563 ~d~~~~~i~~kk~~i~~iE~~v~~gL~~tIn~li~~~~~il~~~qk-k~df~p~s~~s~~~~~~pa~~vVq~L~~~~~~l 641 (763)
T KOG3745|consen 563 PDKLSEVIQKKKSFIQSIEEKVAFGLDRTINVLIGHVKFILSTEQK-KTDFKPDSINSLTRDIEPAIRVVQFLGNHIEQL 641 (763)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccCCcccCcchhhhHHHHHHHHHHHHHHHHH
Confidence 4578888888777766665544 55666666677777777 566665321 12233555777778899999999
Q ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHhhhccCcccchhhHhHHHHHHHHHHHHHhhhhcCCC--CchhhHHHHHHccCCC
Q 003707 685 EGSLNAMDFIMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLRPE--GFFPKTSEGLKLLKMR 762 (801)
Q Consensus 685 ~~~L~~~~f~~i~r~ia~~l~~~L~~~Il~~n~~Fs~~Ga~Qf~~D~~~L~~~f~~~~~rpe--~~f~~l~Ea~~LL~l~ 762 (801)
...+.......+...+++.+-..|++.+-. . +||..||.=+.+|++........|-. |. .+|+-|++-|.||-..
T Consensus 642 ~~~~dg~nLd~~~~eig~rlf~~l~~hl~~-~-~~s~~Gal~licDvn~y~~~i~~~~~-~~vl~~F~tL~~L~nLliV~ 718 (763)
T KOG3745|consen 642 KGRLDGENLDVFLQEIGTRLFRLLLSHLQQ-F-KVSTAGALLLICDVNEYRTFIHSLGQ-PSVLPYFKTLKALANLLIVK 718 (763)
T ss_pred HcccCCchHHHHHHHHHHHHHHHHHHHHHH-h-eeccccceeeeccHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHHeeC
Confidence 999999999999999999999999998777 4 99999999999999977666664433 33 5899999999999998
Q ss_pred hHHHHHhhhchHhHHHhhCCCccCHHHHHHHHHhccc
Q 003707 763 EEQLQGGVLGGEKWMKQSGITHLSVAEAEKIEKNRVF 799 (801)
Q Consensus 763 ~~~l~~~l~~~~~~L~elgI~~Ls~~ea~~vL~rRv~ 799 (801)
.+.+.++.++ =-...++..++..++++|..
T Consensus 719 pd~l~ev~k~-------~~la~f~~~~I~efv~lR~D 748 (763)
T KOG3745|consen 719 PDNLEEVGKG-------KFLANFDREEIHEFVQLRTD 748 (763)
T ss_pred hhhHHHHhch-------hhhccccHHHHHHHHHHhhh
Confidence 8888776541 12346888999999999864
No 14
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.02 E-value=4.7 Score=49.12 Aligned_cols=154 Identities=12% Similarity=0.134 Sum_probs=119.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------ccccccccccccCCCHhHHHHHHHHHHHHHHH
Q 003707 611 SRSGIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKN------RRQWQEKSEENWSVSEMLVGALDYLQGKMSII 684 (801)
Q Consensus 611 ~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~~~~lr~Y~~~------~~~w~~~~~~~~~~S~el~~~L~~L~~~L~~L 684 (801)
...+.|+|++..|+++..+++-- +.-+|+..+=-|... ..-|..+ ....|-|..+.....|+..=..|
T Consensus 770 ~~~s~~ee~~~~fq~la~~cLLl----LhlEVRv~Cfh~l~~~s~~~n~~i~~~~--~s~e~D~~V~aL~k~l~~~e~kl 843 (982)
T KOG3691|consen 770 FYKSAYEELADSFQRLAFDCLLL----LHLEVRVQCFHYLNPLSKLRNTSIVNRD--VSGEPDPSVVALNKDLSTTEEKL 843 (982)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcchhhccCCceeeccc--ccCCCCHHHHHHHHHHHHHHHHH
Confidence 34578888888888888877643 334555554444431 1223222 24567778888888888888889
Q ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHhhhccCcccchhhHhHHHHHHHHHHHHHhhhhcCCCCchhhHHHHHHccCCChH
Q 003707 685 EGSLNAMDFIMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLRPEGFFPKTSEGLKLLKMREE 764 (801)
Q Consensus 685 ~~~L~~~~f~~i~r~ia~~l~~~L~~~Il~~n~~Fs~~Ga~Qf~~D~~~L~~~f~~~~~rpe~~f~~l~Ea~~LL~l~~~ 764 (801)
+.+|++..+.-|+..+..-++..|+..--.-. +.|++|..|..+-+.+|-..+..-+..++.-|.+-+.--.||....+
T Consensus 844 k~~L~e~k~~yIFeGL~hL~s~~LI~~a~~i~-~ln~~~ikkMcRNv~~lQQ~Lsnit~~revdld~ar~fy~ll~nt~d 922 (982)
T KOG3691|consen 844 KACLNEWKRRYIFEGLGHLVSSILISGAQYIE-RLNEGGIKKMCRNVSALQQILSNITESREVDLDKARRFYELLQNTAD 922 (982)
T ss_pred HhhcCHHHHHHHHhhHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhcCHH
Confidence 99999999999999999999999998766644 89999999999999999999999999899999999999999998888
Q ss_pred HHHHhhh
Q 003707 765 QLQGGVL 771 (801)
Q Consensus 765 ~l~~~l~ 771 (801)
.+.+++.
T Consensus 923 eile~v~ 929 (982)
T KOG3691|consen 923 EILEHVI 929 (982)
T ss_pred HHHHHHH
Confidence 8665543
No 15
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.48 E-value=1.3 Score=53.66 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=98.2
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcccccccccccccCCCHhHHHHHHHHHHHHHHHHhccCHHHHH
Q 003707 618 EEIK-KLEEFRTEWVEKISVVILRGFDALSRDY--VKNRRQWQEKSEENWSVSEMLVGALDYLQGKMSIIEGSLNAMDFI 694 (801)
Q Consensus 618 e~i~-~y~~l~~~~~~~iv~~v~~~~~~~lr~Y--~~~~~~w~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f~ 694 (801)
|.|. .+.++..+..+.++......+..++-|| .. .-+|..-- .+..|..-+.++|..|-..=+-+- .++|....
T Consensus 755 E~is~s~s~l~s~l~e~Yi~~k~~~i~~alEp~~~~~-~~~W~~~~-~~~~irdYa~E~l~~lV~VhaEvf-~iap~Ll~ 831 (934)
T KOG2347|consen 755 EDISMSLSGLGSKLFENYIEDKADPIRGALEPYLLDG-GIQWGMAP-PVKGIRDYAKEALHNLVAVHAEVF-AIAPQLLD 831 (934)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhcc-ccccccCC-CccchHHHHHHHHHHHHHHHHHHH-hcCHHHHH
Confidence 4444 7777888888888888889999999997 44 35675222 345677777777776543322211 57888888
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcccchhhHhHHHHHHHHHHHHHhhhhcCCC-CchhhHHHHH
Q 003707 695 MVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLRPE-GFFPKTSEGL 756 (801)
Q Consensus 695 ~i~r~ia~~l~~~L~~~Il~~n~~Fs~~Ga~Qf~~D~~~L~~~f~~~~~rpe-~~f~~l~Ea~ 756 (801)
.|--.+...|.++|++-+=.-+..||.+|+.|...|+..+-.++++|..... +.|+.-.|++
T Consensus 832 kiL~~~ve~i~d~L~~l~~~~v~s~S~nG~lQi~vdl~~l~~~l~~Ylt~~a~~slkqale~l 894 (934)
T KOG2347|consen 832 KILGETVEGISDELLRLFSCDVQSFSANGALQIMVDLEYLEDVLGPYLTKDAKESLKQALEAL 894 (934)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCCCcceeeeeeHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8888888888888888654435699999999999999999999999977322 4566433333
No 16
>PF14906 DUF4495: Domain of unknown function (DUF4495)
Probab=86.57 E-value=55 Score=35.93 Aligned_cols=182 Identities=14% Similarity=0.097 Sum_probs=113.7
Q ss_pred HHHHhchHHHHHHHHHHHHHHHhhhhhhcccCchhHHHHHHHHhhHHHHHHHHHhhcCCchhHHhhHHhhhHhhhhcCCC
Q 003707 522 FLRLAGAPVIQKFLDCVLLRCQEAEGLTALTDEDGLLKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLETSLSDN 601 (801)
Q Consensus 522 Fl~~iql~lLd~f~~rL~~~~~a~~~~~~~~g~~~l~rl~~~~nSa~yi~~~L~eWsed~~FleL~~~~~~r~~~~~~~~ 601 (801)
|+... -...+...++|..+-++. .+-..+..++..+++|-||.+.|.-|.+-+-
T Consensus 3 Fve~~-~k~a~~~Le~L~~~~~E~------p~~A~l~~L~a~LstA~~v~n~l~~Y~~~~k------------------- 56 (321)
T PF14906_consen 3 FVEAC-CKVATAVLEHLHERSQEV------PSHAPLQNLYATLSTAAYVKNHLWHYDQLMK------------------- 56 (321)
T ss_pred hHHHH-HHHHHHHHHHHHHHHhhc------cccCChHHHHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 44444 444555555554443322 2457888999999999999999876533211
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--cccCCCHhHHHHHHHHHH
Q 003707 602 SRSEWPVGGSRSGIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQEKSE--ENWSVSEMLVGALDYLQG 679 (801)
Q Consensus 602 ~~s~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~~~~lr~Y~~~~~~w~~~~~--~~~~~S~el~~~L~~L~~ 679 (801)
+...+++|-..+..|.++.+...+.+.+.-.+-+....-.=-. .-+|..... ++.-.|-.+--=--.+..
T Consensus 57 -------~~~~~~~~~~~~q~y~e~~~~l~~qv~d~h~rv~st~ILQDAe-Sh~W~d~k~FyEgERcSfsiQMW~yy~~g 128 (321)
T PF14906_consen 57 -------ETEKKPLFLVPYQRYQEFIEALQEQVTDYHCRVCSTSILQDAE-SHHWDDPKPFYEGERCSFSIQMWHYYMCG 128 (321)
T ss_pred -------ccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cCCcccCCcccccCCCchhHHHHHHHHHH
Confidence 1234679999999999999988887777666554443322222 345754321 233345554443344555
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhhhccCcccchhhHhHHHHHHHHHHHHHh
Q 003707 680 KMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFR 739 (801)
Q Consensus 680 ~L~~L~~~L~~~~f~~i~r~ia~~l~~~L~~~Il~~n~~Fs~~Ga~Qf~~D~~~L~~~f~ 739 (801)
.=+.|=..+||..-.+|.-.++++--..|-..- ...+=|..-..||..|+.++.-...
T Consensus 129 lr~DLW~~lPpk~AQ~Ila~vL~eSL~~L~~RY--~qa~PS~~Rt~Qir~DI~aiLlc~~ 186 (321)
T PF14906_consen 129 LRHDLWTILPPKLAQRILAEVLEESLQLLASRY--AQARPSYKRTPQIRVDITAILLCTE 186 (321)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH--hhcCCchhhhHHHHHHHHHHHHHHH
Confidence 556666788999888888877776444333321 1235577888999999998655433
No 17
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=82.87 E-value=2.6 Score=38.53 Aligned_cols=95 Identities=21% Similarity=0.238 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHhhhccCcccchhhHhHHHHHHHHHHHHHhhhhcCC--CCchhhHHHHHHccCCChHHHHHhhhch
Q 003707 696 VWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLRP--EGFFPKTSEGLKLLKMREEQLQGGVLGG 773 (801)
Q Consensus 696 i~r~ia~~l~~~L~~~Il~~n~~Fs~~Ga~Qf~~D~~~L~~~f~~~~~rp--e~~f~~l~Ea~~LL~l~~~~l~~~l~~~ 773 (801)
+++.+..-|+..+|+.++.....++..-|.|+..=+..|..-........ ..+|..+.+++.||.++...+.+.
T Consensus 2 ~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~~~~~l~~l~Qa~~lL~~~k~~~~d~---- 77 (105)
T PF01843_consen 2 LFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEAAEEHLQPLSQAANLLQLRKSTLQDW---- 77 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH-HHHCHHHHHHHHHCCC--SSHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcCcchhHH----
Confidence 56788888999999999996556799999999988776554433221111 257999999999999865433322
Q ss_pred HhHHHhhCCCccCHHHHHHHHHh
Q 003707 774 EKWMKQSGITHLSVAEAEKIEKN 796 (801)
Q Consensus 774 ~~~L~elgI~~Ls~~ea~~vL~r 796 (801)
..+.+ --..|++.++.++|.+
T Consensus 78 -~~~~~-~c~~Ln~~Qi~~iL~~ 98 (105)
T PF01843_consen 78 -DSLRE-TCPSLNPAQIRKILSN 98 (105)
T ss_dssp -HHHCC-CTTTS-HHHHHHHHCC
T ss_pred -HHHHH-HcccCCHHHHHHHHHh
Confidence 11111 1237999999999864
No 18
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=80.62 E-value=1e+02 Score=39.24 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=53.7
Q ss_pred CCHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHh---hhhhhccCCCCCCC
Q 003707 26 TNKEYHARAARLASELE---TQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLT---DLASASRSPSSVSD 99 (801)
Q Consensus 26 ~s~~dl~~~~~l~~~l~---~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~---~l~~~~~~~~~~~~ 99 (801)
+|..|++.+..|+++.+ +.-+.++.+-.+..+.|++|..+.....+.+.....+++.-.+ .+...+. ..+
T Consensus 1536 ~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~----~aE 1611 (1758)
T KOG0994|consen 1536 RTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETA----AAE 1611 (1758)
T ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHH
Confidence 35667777666666554 4455677778888888998888876666666665555543333 3333332 111
Q ss_pred cchhhhhhhhhhcHHHHHHHHH
Q 003707 100 GGVRAKQILGEELPALAKEVAR 121 (801)
Q Consensus 100 ~~~~~~~~l~~~l~~l~~~l~~ 121 (801)
.....-.+-+++|++.|++|+.
T Consensus 1612 ~~~~~a~q~~~eL~~~~e~lk~ 1633 (1758)
T KOG0994|consen 1612 KLATSATQQLGELETRMEELKH 1633 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2111111235777777777764
No 19
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=80.03 E-value=85 Score=33.19 Aligned_cols=148 Identities=14% Similarity=0.187 Sum_probs=91.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCHhH---HHHHHHHHHHHHHHH--hcc
Q 003707 614 GIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQEKSEENWSVSEML---VGALDYLQGKMSIIE--GSL 688 (801)
Q Consensus 614 siFde~i~~y~~l~~~~~~~iv~~v~~~~~~~lr~Y~~~~~~w~~~~~~~~~~S~el---~~~L~~L~~~L~~L~--~~L 688 (801)
.+|.++++....++.-+...++..+. .++.- -..+. .-.|...+ .....|+=. +.-+..+..+|..+. ..+
T Consensus 42 ~Fy~~tv~~v~dLr~~iy~~~a~~~l-~~~~i-~~~Ia-~vKWdvke-v~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i 117 (234)
T PF10474_consen 42 QFYSQTVSAVPDLREPIYKCVASRLL-DLEQI-LNSIA-NVKWDVKE-VMSQHSSYVDQLVQEFQQFSERLDEISKQGPI 117 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHH-HHHHH-HcCCCCCC-CCCccCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45666666666666666655555554 22222 22222 13475443 233345544 444445555564444 377
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhccCcccchhhHhHHHHHHHHHHHHHhhhhcC-CCCchhhHHHHHHccCCChHHH
Q 003707 689 NAMDFIMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLR-PEGFFPKTSEGLKLLKMREEQL 766 (801)
Q Consensus 689 ~~~~f~~i~r~ia~~l~~~L~~~Il~~n~~Fs~~Ga~Qf~~D~~~L~~~f~~~~~r-pe~~f~~l~Ea~~LL~l~~~~l 766 (801)
++.....+|+.++..+.+.|.++.-... +.|..|-++...|+..+..-+...++. |-....-+..=++---++.+++
T Consensus 118 ~~~~~~~lw~~~i~~~~~~Lveg~s~vk-KCs~eGRalM~lD~q~~~~~le~l~~~~~~p~~~~Ve~YIKAyYl~e~e~ 195 (234)
T PF10474_consen 118 PPEVQNVLWDRLIFFAFETLVEGYSRVK-KCSNEGRALMQLDFQQLQNKLEKLSGIRPIPNREYVENYIKAYYLPEEEL 195 (234)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999876644 999999999999999988887765542 2222223333344444555443
No 20
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=71.36 E-value=1.3e+02 Score=33.53 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=44.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHhhhhhh
Q 003707 30 YHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLTDLASA 90 (801)
Q Consensus 30 dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 90 (801)
+++.+-+--.+|..+...+++|+.++..+-...-...+.....+...+.+++..+..|...
T Consensus 8 ~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~ 68 (338)
T PF04124_consen 8 SLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDS 68 (338)
T ss_pred CHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555667788888899999999988888777777666677777777777777666543
No 21
>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=71.03 E-value=2.4e+02 Score=33.88 Aligned_cols=325 Identities=13% Similarity=0.036 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHHHHh-hccCCcccccccCCccCcccceEeecCCchHHHHHHHHHHHHHHHHHHHhhccCCCccc-ccc
Q 003707 402 HLVDLMISFDKRIKSL-VEQSGILFSLQEDGNLQKISSLSVFCDRPDWLDIWAQIELADTLENLKHDVDDERNWKM-KVQ 479 (801)
Q Consensus 402 HlIdE~l~FD~~Lr~~-~~y~~~~~~~~~~~~w~gls~~~vl~~~~~~f~~Wl~~E~~~A~~r~~~Ii~s~daw~i-~~d 479 (801)
-+|.-+-.|++.|.+. +--.|. .+ + +-..-=.++|--||.+|+.+|+.....--. +|+
T Consensus 351 ~iie~t~qfE~aLkem~f~~~~d-----q~------~---------allkfaed~ethfanRkc~~il~kARnLi~~~~~ 410 (719)
T KOG2163|consen 351 MIIELTQQFEVALKEMKFLGFFD-----QK------S---------ALLKFAEDTETHFANRKCFAILSKARNLINETYD 410 (719)
T ss_pred HHHHHHHHHHHHHHHHHHhcCch-----hh------h---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888888899988887 211111 00 1 222223468889999999998875432211 222
Q ss_pred cc---ccc------C----CCCCCCCChhHHHHHHHHHHH-HhhccCC-CChhhHHHHHHHhchHHHHHHHHHHHHHHHh
Q 003707 480 KG---ALL------F----GSEDYRSPTVSSAFLQRLSSV-VDRCRSL-PTVSLRSRFLRLAGAPVIQKFLDCVLLRCQE 544 (801)
Q Consensus 480 ~~---~~~------~----~~~~~K~p~~A~~~~~LL~~i-teRy~~L-~~~~~rl~Fl~~iql~lLd~f~~rL~~~~~a 544 (801)
+. .|. + .-..-....+|..||+|+..+ .+-+-.. -+..-++-+. + -+++.-|++..=....
T Consensus 411 ~~v~vipntha~hvanl~FsfprC~vSeSa~~fvnL~~~tL~~at~ss~dq~a~~la~~--a-rni~hly~~vVP~khr- 486 (719)
T KOG2163|consen 411 KLVTVIPNTHAEHVANLYFSFPRCTVSESAINFVNLLRDTLKAATASSDDQAAAKLALT--A-RNIVHLYVIVVPRKHR- 486 (719)
T ss_pred hhceecccccHHHHhhhhccCcceeecHHHHHHHHHHHHHHHHHhcccchhhHHHHHHH--H-HHHHHHHHHHhhHHHH-
Confidence 10 100 0 001223457899999999864 4444444 2333333333 3 3566667665432221
Q ss_pred hhhhhcccCchhHHHHHHH-HhhHHHHHHHHHhhcCCchhHHhhHHhhhHhhhhcCCCCCCCCCCCCCCCCCcHHHHHHH
Q 003707 545 AEGLTALTDEDGLLKVANC-VNAAHYFESVLREWCEDVFFLEMALDQDNQLETSLSDNSRSEWPVGGSRSGIFDEEIKKL 623 (801)
Q Consensus 545 ~~~~~~~~g~~~l~rl~~~-~nSa~yi~~~L~eWsed~~FleL~~~~~~r~~~~~~~~~~s~~~~~~~~~siFde~i~~y 623 (801)
+.+ ..+..++.+ .|.+.||.+..-.-+. .....|-+.+..|
T Consensus 487 -ell------~siPq~AaifhNNCmyi~h~~~~h~f-------------------------------~g~~~ladlaprl 528 (719)
T KOG2163|consen 487 -ELL------SSIPQMAAIFHNNCMYISHCIMTHSF-------------------------------LGEPLLADLAPRL 528 (719)
T ss_pred -HHH------HhcchHHHHHhcccHHHHHHHHhhhc-------------------------------ccchHHHHHHHHH
Confidence 111 233344444 4668888762211100 0123588899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCHhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 003707 624 EEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQEKSEENWSVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATG 703 (801)
Q Consensus 624 ~~l~~~~~~~iv~~v~~~~~~~lr~Y~~~~~~w~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~ 703 (801)
+.+..+....-++...++..+.+..... - +..+..+..-+++...-..|.-|+..=...+..|++..|....-.+++.
T Consensus 529 r~~a~ecf~kQv~~q~seL~e~l~sa~~-F-en~~~ee~~ssa~klVrQcL~qLkll~~vw~~vLpe~vYck~mc~Llnt 606 (719)
T KOG2163|consen 529 RTVAAECFEKQVTRQRSELTEYLESASI-F-ENLPAEEMSSSADKLVRQCLLQLKLLAKVWREVLPEVVYCKVMCSLLNT 606 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-h-ccCcHHhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 9999999999998888877765443322 0 1111111112233334445556666556666789999999999999998
Q ss_pred HHHHHHHhhhccCcccchhhHhHHHHHHHH----HHHHHhhhh-----cCCCCchhhHHHHHHccCCChHHHHHhhhchH
Q 003707 704 VDRLLFRGILMSNAKFYDGGVVRFGCDMEV----LFGVFRAWC-----LRPEGFFPKTSEGLKLLKMREEQLQGGVLGGE 774 (801)
Q Consensus 704 l~~~L~~~Il~~n~~Fs~~Ga~Qf~~D~~~----L~~~f~~~~-----~rpe~~f~~l~Ea~~LL~l~~~~l~~~l~~~~ 774 (801)
+-.-+...|++.. -|+++.+.-+.-=++. .-.+|..-. ..|-.-|-++.|-.-+|+++.-++.+.-++|.
T Consensus 607 ~~~elir~V~tl~-Disa~da~eL~dLik~vL~~~p~vfa~~~e~~et~v~v~~w~pl~el~~mL~asLmeIt~rW~dgk 685 (719)
T KOG2163|consen 607 LLDELIRHVVTLS-DISANDANELADLIKRVLEVVPNVFAYKEETKETDVCVREWFPLNELVFMLGASLMEITHRWFDGK 685 (719)
T ss_pred HHHHHHHHHhhHH-hhhhhhhHHHHHHHHHHHHhhhhhhcChhhccCccccHHHhccHHHHHHHhCchHhHHHHHHhcCC
Confidence 8888888898876 8888888777654443 333444211 12223477788888888877555444433444
Q ss_pred hHHHhhCCCccCHHHHHHHHH
Q 003707 775 KWMKQSGITHLSVAEAEKIEK 795 (801)
Q Consensus 775 ~~L~elgI~~Ls~~ea~~vL~ 795 (801)
..|.. +++.+|+..+++
T Consensus 686 Gplaa----~fsrsEVk~lIk 702 (719)
T KOG2163|consen 686 GPLAA----HFSRSEVKGLIK 702 (719)
T ss_pred ccHHh----hccHHHHHHHHH
Confidence 33332 466777766654
No 22
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=64.70 E-value=92 Score=38.94 Aligned_cols=125 Identities=14% Similarity=0.195 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCHhHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHH
Q 003707 624 EEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQEKSEENWSVSEMLVGALDYLQGKMSIIEG-SLNAMDFIMVWRSLAT 702 (801)
Q Consensus 624 ~~l~~~~~~~iv~~v~~~~~~~lr~Y~~~~~~w~~~~~~~~~~S~el~~~L~~L~~~L~~L~~-~L~~~~f~~i~r~ia~ 702 (801)
..+...+...+|+.+..++...+.+++... . . --+.....|..|...+..|++ -++.+.-..++-++..
T Consensus 651 a~~vq~aFr~LV~clqsel~~~~~afLden-~-~--------~~~a~gdVlh~L~~aM~llRrCrvNAALTIQLfsqLfH 720 (1629)
T KOG1892|consen 651 AHLVQMAFRYLVHCLQSELNNYMPAFLDEN-S-L--------QRPAIGDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFH 720 (1629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-c-c--------cCccccchHHHhHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 345556666677777777777776666631 1 1 122334467788888888988 6899999999999999
Q ss_pred HHHHHHHHhhhccCcccchhhHhHHHHHHHHH----HHHHhhhhcCCC------CchhhHHHHHHccCCChH
Q 003707 703 GVDRLLFRGILMSNAKFYDGGVVRFGCDMEVL----FGVFRAWCLRPE------GFFPKTSEGLKLLKMREE 764 (801)
Q Consensus 703 ~l~~~L~~~Il~~n~~Fs~~Ga~Qf~~D~~~L----~~~f~~~~~rpe------~~f~~l~Ea~~LL~l~~~ 764 (801)
-|+-|+|+.+++.+ .+.+...|+..+ ...+..||.|.. -++.|+.+|..||.++..
T Consensus 721 ~iN~~~FN~lVt~~------~s~~cs~~wGk~~~~rl~~ie~waErqGlElAAdCHL~ri~Qaa~lL~~~K~ 786 (1629)
T KOG1892|consen 721 FINMWLFNRLVTDP------DSGLCSHYWGKIIRQRLGHIEAWAERQGLELAADCHLSRIVQAATLLTMDKY 786 (1629)
T ss_pred HHHHHHhhhhcccC------chhhhhhhHHHHHHHHHHHHHHHHHHhcchHhhhccHHHHHHHHHHHhcccc
Confidence 99999999999932 345566666542 344566777644 379999999999999875
No 23
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=58.99 E-value=40 Score=30.17 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=32.9
Q ss_pred hhhhhccCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHH
Q 003707 19 SFLNDNLTNKEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVN 81 (801)
Q Consensus 19 ~~ld~~~~s~~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (801)
.=++.+|-...+-..+..=++.+...++.|.+.|+.+..+......+...-+.++.+....|+
T Consensus 22 ~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 22 KAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIR 84 (89)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445554555555555556666666666666666666655444444333344444433333
No 24
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=58.68 E-value=3e+02 Score=35.49 Aligned_cols=11 Identities=9% Similarity=0.190 Sum_probs=6.4
Q ss_pred HHHHHHHHhcC
Q 003707 214 ADHRALLSSLG 224 (801)
Q Consensus 214 ~~l~~~L~~l~ 224 (801)
.+|+..+++++
T Consensus 1622 ~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1622 GELETRMEELK 1632 (1758)
T ss_pred HHHHHHHHHHH
Confidence 45666666554
No 25
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=55.35 E-value=1.9e+02 Score=34.45 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=30.7
Q ss_pred CchhhhhhhhccCCHHHHHhHHHHHHHHHHHHHHH
Q 003707 14 SSTTLSFLNDNLTNKEYHARAARLASELETQCSHL 48 (801)
Q Consensus 14 ~~~~~~~ld~~~~s~~dl~~~~~l~~~l~~~~~~l 48 (801)
+.|-..|+|++-.|..+|..+...+-++..|++.+
T Consensus 99 ~GrSr~~INg~~Vs~~~L~~l~~~Li~IHGQh~~q 133 (557)
T COG0497 99 DGRSRAFINGQPVSLAQLKELGQLLIDIHGQHEHQ 133 (557)
T ss_pred CCceeEEECCEEeeHHHHHHHHHhhheeeccchHH
Confidence 66788999999999999999999888888887655
No 26
>PF00032 Cytochrom_B_C: Cytochrome b(C-terminal)/b6/petD; InterPro: IPR005798 In the mitochondrion of eukaryotes and in aerobic prokaryotes, cytochrome b is a component of respiratory chain complex III (1.10.2.2 from EC) - also known as the bc1 complex or ubiquinol-cytochrome c reductase. In plant chloroplasts and cyanobacteria, there is a analogous protein, cytochrome b6, a component of the plastoquinone-plastocyanin reductase (1.10.99.1 from EC), also known as the b6f complex. Cytochrome b/b6 [, ] is an integral membrane protein of approximately 400 amino acid residues that probably has 8 transmembrane segments. In plants and cyanobacteria, cytochrome b6 consists of two subunits encoded by the petB and petD genes. The sequence of petB is colinear with the N-terminal part of mitochondrial cytochrome b, while petD corresponds to the C-terminal part. Cytochrome b/b6 non-covalently binds two haem groups, known as b562 and b566. Four conserved histidine residues are postulated to be the ligands of the iron atoms of these two haem groups. Apart from regions around some of the histidine haem ligands, there are a few conserved regions in the sequence of b/b6. The best conserved of these regions includes an invariant P-E-W triplet which lies in the loop that separates the fifth and sixth transmembrane segments. It seems to be important for electron transfer at the ubiquinone redox site - called Qz or Qo (where o stands for outside) - located on the outer side of the membrane. This entry is the C terminus of these proteins.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0016020 membrane; PDB: 2E76_B 2D2C_B 1VF5_B 2E74_B 2E75_B 2ZT9_B 2YIU_D 1Q90_D 1ZRT_C 1PPJ_P ....
Probab=52.09 E-value=8.4 Score=35.14 Aligned_cols=16 Identities=44% Similarity=0.737 Sum_probs=12.2
Q ss_pred CccchHHHHHHHHHhh
Q 003707 319 KPEFIFTLVYKITRDY 334 (801)
Q Consensus 319 KPEw~f~~vl~~i~~~ 334 (801)
||||||-.++.++|.-
T Consensus 12 ~PEWYFl~~y~iLr~i 27 (102)
T PF00032_consen 12 KPEWYFLPFYAILRSI 27 (102)
T ss_dssp --TGGGHHHHHHHHHS
T ss_pred CCccccccccceeeec
Confidence 8999999999888774
No 27
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=50.27 E-value=93 Score=35.13 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=65.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh---HhHHHHHhhhhhhccCCCCCCCcchhhh
Q 003707 29 EYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLF---THVNVKLTDLASASRSPSSVSDGGVRAK 105 (801)
Q Consensus 29 ~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 105 (801)
.+|+.+.+.-.-+..|.+.+-++.+.++.+|.+++..|...+..+...- .+|...|+.++..-.++ ++..+|+++
T Consensus 252 ~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer--g~~mtD~sP 329 (359)
T PF10498_consen 252 KTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER--GSSMTDGSP 329 (359)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCCH
Confidence 4666677777777788888888899999999999999988887666543 46677777665533322 233444444
Q ss_pred hh-hhhhcHHHHHHHHHHHHHHHHH
Q 003707 106 QI-LGEELPALAKEVARVDMVRAYA 129 (801)
Q Consensus 106 ~~-l~~~l~~l~~~l~~le~~~~Y~ 129 (801)
-. +-.-+..+-+++++++..-+=+
T Consensus 330 lv~IKqAl~kLk~EI~qMdvrIGVl 354 (359)
T PF10498_consen 330 LVKIKQALTKLKQEIKQMDVRIGVL 354 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhee
Confidence 33 3355666666777666554433
No 28
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=49.96 E-value=1e+02 Score=32.29 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=50.4
Q ss_pred hccCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHh-HHHHHhhhh
Q 003707 23 DNLTNKEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTH-VNVKLTDLA 88 (801)
Q Consensus 23 ~~~~s~~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~ 88 (801)
+++....|| +-..+++++.++...+++++.+...|++++..+...++.++..+.+ ++..|.++.
T Consensus 46 ~eLk~qnkl--i~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~ 110 (230)
T PF03904_consen 46 QELKRQNKL--IIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVD 110 (230)
T ss_pred HHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666676 7788999999999999999999999999999987776666665443 366666663
No 29
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=49.61 E-value=1.5e+02 Score=29.44 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=33.0
Q ss_pred CHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003707 27 NKEYHARAARLASELETQCSHLDQSLVELNRNLESKLS 64 (801)
Q Consensus 27 s~~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~ 64 (801)
|.+++..+|.=+.+++.++..|++....++..|....+
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56888889988999999999999999999999886555
No 30
>PRK14127 cell division protein GpsB; Provisional
Probab=49.57 E-value=26 Score=32.57 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=19.4
Q ss_pred hhhhhhhhccCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003707 16 TTLSFLNDNLTNKEYHARAARLASELETQCSHLDQSLVELNRNLE 60 (801)
Q Consensus 16 ~~~~~ld~~~~s~~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~ 60 (801)
.|.+|||.= +.|++.+-.-+.+|+.+...|+.+|.+.+.++.
T Consensus 27 EVD~FLd~V---~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 27 EVDKFLDDV---IKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555533 234444444444444455555544444444444
No 31
>PRK13676 hypothetical protein; Provisional
Probab=49.55 E-value=1.5e+02 Score=27.49 Aligned_cols=70 Identities=10% Similarity=0.219 Sum_probs=49.4
Q ss_pred hhhhhhhhHhHHHHHhhhhhhccCCCCCCCcchhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHH
Q 003707 70 TDRVSGLFTHVNVKLTDLASASRSPSSVSDGGVRAKQILGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAV 146 (801)
Q Consensus 70 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~le~~~~Y~~~~~~~e~l~~d~e~~~ 146 (801)
...+...+.+++..+..+...-. .+... .+...+++..+.+++..-..++.|++.=.+++.+++||...+
T Consensus 35 d~~a~~li~~F~~~q~~~~~~q~----~g~~~---~~e~~~~l~~l~~~i~~n~~i~~y~~Ae~~l~~ll~~v~~iI 104 (114)
T PRK13676 35 DEEAKKLFDEFRALQLEIQQKQM----TGQEI---TEEEQQKAQELGQKIQQNELLSKLMEAEQRLSVYINDINKII 104 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH----cCCCC---CHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777655555433211 11111 122479999999999999999999999999999999888754
No 32
>PF06133 DUF964: Protein of unknown function (DUF964); InterPro: IPR010368 This entry consists of several relatively short bacterial and archaeal hypothetical sequences. It also includes YlbF and YmcA proteins which are involved in the formation of biofilms []. YlbF regulates sporulation prior to stage II, positively controlling the competence regulator ComK at a post-transcriptional level. It may also modulate the translation, stability or activity of ComS and may work together with YmcA to regulate community development [].; PDB: 2IAZ_C 2OEE_A 2OEQ_D 2PIH_A.
Probab=48.80 E-value=1.4e+02 Score=27.12 Aligned_cols=74 Identities=22% Similarity=0.274 Sum_probs=51.3
Q ss_pred hhhhhhhhHhHHHHHhhhhhhccCCCCCCCcchhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHhhh
Q 003707 70 TDRVSGLFTHVNVKLTDLASASRSPSSVSDGGVRAKQILGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAVSSA 149 (801)
Q Consensus 70 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~le~~~~Y~~~~~~~e~l~~d~e~~~~s~ 149 (801)
...+...+.+++.....+...-. .+... .+...++|..+.+++.....++.|+..=.++..|+.+|-..++..
T Consensus 32 d~e~~~l~~~f~~~q~~~~~~q~----~g~~~---~~e~~~~l~~~~~~l~~~p~v~~y~~ae~~~~~ll~~i~~~I~~~ 104 (108)
T PF06133_consen 32 DPEAQKLIEEFQKLQQELQNAQM----YGKEP---PKEEIEELQELQEELMQNPVVKEYLQAEQALQDLLQDINQIISEA 104 (108)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH----TTSCH---HHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh----hccCC---cHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566666666665554443222 12222 133579999999999999999999999999999988887755444
Q ss_pred c
Q 003707 150 M 150 (801)
Q Consensus 150 ~ 150 (801)
|
T Consensus 105 i 105 (108)
T PF06133_consen 105 I 105 (108)
T ss_dssp H
T ss_pred h
Confidence 3
No 33
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=45.22 E-value=99 Score=29.55 Aligned_cols=62 Identities=11% Similarity=0.172 Sum_probs=43.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHhhhhh
Q 003707 28 KEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLTDLAS 89 (801)
Q Consensus 28 ~~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 89 (801)
...|..+-.=+.+++.+...|+.....++..|.+...+|...-..+...+..+..+...|..
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555567777777777777888888888888888877766666666666666665543
No 34
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=42.44 E-value=4.4e+02 Score=27.93 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHhhhhh
Q 003707 35 ARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLTDLAS 89 (801)
Q Consensus 35 ~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 89 (801)
|....+.+.+.+.|+.||..+.+.+.. -..+..++.....++-..+..|..
T Consensus 21 D~wF~~k~~~ie~LE~qLk~L~k~~~~----lv~~r~eLa~~~~eFa~s~~~L~~ 71 (234)
T cd07665 21 DVWFEEKLQEVECEEQRLRKLHAVVET----LVNHRKELALNTALFAKSLAMLGS 71 (234)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556667777777777777766655552 222333444444445444444444
No 35
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=39.91 E-value=6.1e+02 Score=28.80 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhhcchhhhHHHHHHHHHH
Q 003707 165 MRLLAIKALKQAEDILTSVTKTRPQWARLVAAVDHRV 201 (801)
Q Consensus 165 ~al~a~~~L~~~~~~~~~~~~~~~~~~~Lv~~v~~~v 201 (801)
+|.+....|..+......+...-..|..++.-|....
T Consensus 330 ~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~ 366 (388)
T PF04912_consen 330 EAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKF 366 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666555566665567777776555543
No 36
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=38.73 E-value=3.4e+02 Score=32.23 Aligned_cols=129 Identities=12% Similarity=0.155 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCHhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 003707 621 KKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQEKSEENWSVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSL 700 (801)
Q Consensus 621 ~~y~~l~~~~~~~iv~~v~~~~~~~lr~Y~~~~~~w~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~i 700 (801)
.-|-.+.+-....|+..+....+.++..-+. ..|-. ++-.-....+|+.+|......+++-.|...-..+
T Consensus 534 Dgfi~I~~~s~~~l~~~i~~d~~pa~~~iF~--~~Wy~--------gS~~k~IvdTl~dyl~D~~~~M~~~lFv~Fi~e~ 603 (742)
T COG5173 534 DGFIDILKASNTFLAEFIIYDCQPAIDKIFT--DEWYG--------GSVTKVIVDTLQDYLSDYQNTMSEYLFVTFIHEL 603 (742)
T ss_pred hhHHHHHhhhhHHHHHHHHHhhhhhHHHhcC--ccccc--------cchHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3344455555556666666666666666555 24532 2334446778999999999999999999999988
Q ss_pred HHHHHHHHHHhhhccCcccchhh-HhHHHHHHHHHHHHHhhhhcCCC---CchhhHHHHHHccC
Q 003707 701 ATGVDRLLFRGILMSNAKFYDGG-VVRFGCDMEVLFGVFRAWCLRPE---GFFPKTSEGLKLLK 760 (801)
Q Consensus 701 a~~l~~~L~~~Il~~n~~Fs~~G-a~Qf~~D~~~L~~~f~~~~~rpe---~~f~~l~Ea~~LL~ 760 (801)
...+.--....+-..|+-|+..- ..|+..|..-+..+|+.|.. |+ ..|.-+.+-+-++.
T Consensus 604 s~~~vi~yl~~l~~k~a~~~~~na~~~lksD~~~~y~~f~~y~d-~e~~k~tl~pI~k~~~~m~ 666 (742)
T COG5173 604 SMSIVIAYLKQLGRKRASIAEENASRTLKSDHTKLYEMFSGYGD-PEDVKTTLSPILKIIPLMD 666 (742)
T ss_pred HHHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHcccc
Confidence 88876555566666576777766 78999999999999998765 55 23444444444443
No 37
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=38.50 E-value=2e+02 Score=25.39 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=31.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003707 29 EYHARAARLASELETQCSHLDQSLVELNRNLESKLS 64 (801)
Q Consensus 29 ~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~ 64 (801)
-+++.++.-+.++..-|..|..+++....+|.+...
T Consensus 14 P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 14 PDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999987665
No 38
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=38.26 E-value=3.8e+02 Score=27.86 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHhhhh
Q 003707 37 LASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLTDLA 88 (801)
Q Consensus 37 l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 88 (801)
-+..|+.+...++.+|.+++..+.+|+.+|......-...-+.++..|+|=.
T Consensus 33 ~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~ 84 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKH 84 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5788999999999999999999999999996654444444456666666543
No 39
>PRK09039 hypothetical protein; Validated
Probab=37.98 E-value=3.8e+02 Score=30.01 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003707 39 SELETQCSHLDQSLVELNRNLES 61 (801)
Q Consensus 39 ~~l~~~~~~l~~ql~~~~~~l~~ 61 (801)
..++.+..+++.++..+++.-+.
T Consensus 77 ~~l~~~l~~l~~~l~~a~~~r~~ 99 (343)
T PRK09039 77 QDLQDSVANLRASLSAAEAERSR 99 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 40
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=34.04 E-value=9.4e+02 Score=29.81 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003707 38 ASELETQCSHLDQSLVELN 56 (801)
Q Consensus 38 ~~~l~~~~~~l~~ql~~~~ 56 (801)
+.+.+.++..+++||.+-+
T Consensus 497 L~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 497 LAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 41
>PRK10869 recombination and repair protein; Provisional
Probab=33.73 E-value=9e+02 Score=28.96 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=24.6
Q ss_pred CchhhhhhhhccCCHHHHHhHHHHHHHHHHHHH
Q 003707 14 SSTTLSFLNDNLTNKEYHARAARLASELETQCS 46 (801)
Q Consensus 14 ~~~~~~~ld~~~~s~~dl~~~~~l~~~l~~~~~ 46 (801)
+.+-.-|+|++..|..+|..+-..+-++..|.+
T Consensus 100 ~g~s~~~INg~~v~~~~l~~l~~~li~ihgQ~~ 132 (553)
T PRK10869 100 DGRSRGFINGTPVPLSQLRELGQLLIQIHGQHA 132 (553)
T ss_pred CCcceEEECCeeccHHHHHHHHHhhhheeCcCh
Confidence 345567899999999999988776666665553
No 42
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=33.43 E-value=1.8e+02 Score=29.38 Aligned_cols=38 Identities=26% Similarity=0.266 Sum_probs=33.8
Q ss_pred hccCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003707 23 DNLTNKEYHARAARLASELETQCSHLDQSLVELNRNLE 60 (801)
Q Consensus 23 ~~~~s~~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~ 60 (801)
-++.|.+|++.+.+++-+|+.....++.++.+.-..|.
T Consensus 66 lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~ 103 (189)
T TIGR02132 66 VNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELE 103 (189)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999766666
No 43
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=33.04 E-value=6.3e+02 Score=30.32 Aligned_cols=20 Identities=15% Similarity=0.009 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhcCCCCCCC
Q 003707 211 QAIADHRALLSSLGWPPPLS 230 (801)
Q Consensus 211 ~l~~~l~~~L~~l~WP~~~~ 230 (801)
++.+.+.+.|+.++=+....
T Consensus 375 ~L~~~v~~eL~~L~Me~a~F 394 (557)
T COG0497 375 ELEKEVTAELKALAMEKARF 394 (557)
T ss_pred HHHHHHHHHHHhcCCCCceE
Confidence 34455666777788776544
No 44
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.97 E-value=5.7e+02 Score=29.88 Aligned_cols=75 Identities=24% Similarity=0.274 Sum_probs=52.5
Q ss_pred HHHHHH-HHHHHHHHHHHHhhhccCcccchhhHhHHHHHHHHHHHHHhhhhcCCCCchhhHHHHHHccCCChHHHHHhhh
Q 003707 693 FIMVWR-SLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLRPEGFFPKTSEGLKLLKMREEQLQGGVL 771 (801)
Q Consensus 693 f~~i~r-~ia~~l~~~L~~~Il~~n~~Fs~~Ga~Qf~~D~~~L~~~f~~~~~rpe~~f~~l~Ea~~LL~l~~~~l~~~l~ 771 (801)
|..-|- .+++.-+....+.|+- -...+..|+.|+..|++.|-.|+..... |- =+.+..-...|.-+.+++++.++
T Consensus 748 fatewmfkVaEga~aLYmdQi~g-Ik~i~dr~AqQLSVDIEYLSNVLeaL~l-pI--~~~Laqf~TcLaa~~~elkdlmk 823 (828)
T KOG4182|consen 748 FATEWMFKVAEGACALYMDQILG-IKSIPDRAAQQLSVDIEYLSNVLEALGL-PI--NLQLAQFLTCLAAAPDELKDLMK 823 (828)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhc-ccccCchhhhhhhhhHHHHHHHHHHhCC-CC--ChHHHHHHHHHhcCcHHHHHHhc
Confidence 444555 4455555555555554 4478999999999999998888876433 21 25677888888888888887765
No 45
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.33 E-value=9.9e+02 Score=29.02 Aligned_cols=51 Identities=10% Similarity=0.129 Sum_probs=39.9
Q ss_pred ccCccchHHHHHHHHHhhHHhHHhhhHHHHHh---ccccccchHHHHHHHHHHH
Q 003707 317 TDKPEFIFTLVYKITRDYVDSMDELLQPLVDE---ALLVGYSCREEWISAMVTA 367 (801)
Q Consensus 317 ldKPEw~f~~vl~~i~~~~~fl~~~lqp~l~~---~~~~~~~~~~efi~~ll~~ 367 (801)
++-|-||-.+|+.|+.++.+--.+.|.-.+++ -|+...+-+.-|.+..|..
T Consensus 736 peypawf~pfv~qwldenee~s~dflrga~e~dkkdgf~qtseha~fs~svvdv 789 (1283)
T KOG1011|consen 736 PEYPAWFEPFVMQWLDENEEVSMDFLRGALERDKKDGFQQTSEHALFSCSVVDV 789 (1283)
T ss_pred CCchHHHHHHHHHHhccchHHHHHHHHhHhhcccccCccccchhhhhcchHHHH
Confidence 56799999999999999998888888888873 3666666677776665543
No 46
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=30.90 E-value=5e+02 Score=25.71 Aligned_cols=50 Identities=12% Similarity=0.128 Sum_probs=30.0
Q ss_pred hhhhhhhccCCH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003707 17 TLSFLNDNLTNK-EYHARAARLASELETQCSHLDQSLVELNRNLESKLSVY 66 (801)
Q Consensus 17 ~~~~ld~~~~s~-~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~ 66 (801)
+..+||.+=..+ .+|+.+...=.+++....+-+.+|.+|+..-.+....+
T Consensus 29 I~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A 79 (154)
T PRK06568 29 ILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEES 79 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777776555 56666666666666666666666666555544433333
No 47
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=29.95 E-value=4.6e+02 Score=28.62 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=49.4
Q ss_pred chhhhhhhhccCC--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 003707 15 STTLSFLNDNLTN--KEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFT 78 (801)
Q Consensus 15 ~~~~~~ld~~~~s--~~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~ 78 (801)
..+..|||. +++ +.+|+.+.+.-..+..|.+-|-++.+.|...|.+++-+|..-+..+.+.-.
T Consensus 244 ~~~~~~Ldk-lh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~ 308 (384)
T KOG0972|consen 244 GNVGPYLDK-LHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTE 308 (384)
T ss_pred cchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 345667753 343 378999999999999999999999999999999999999877765555433
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=29.65 E-value=9.8e+02 Score=32.43 Aligned_cols=22 Identities=5% Similarity=0.367 Sum_probs=20.3
Q ss_pred hhhhcHHHHHHHHHHHHHHHHH
Q 003707 108 LGEELPALAKEVARVDMVRAYA 129 (801)
Q Consensus 108 l~~~l~~l~~~l~~le~~~~Y~ 129 (801)
+.++++..-+++.+.+.|..|+
T Consensus 892 ~~~~~~~~~~~~~~~~~a~~y~ 913 (1486)
T PRK04863 892 LADRVEEIREQLDEAEEAKRFV 913 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999997
No 49
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.49 E-value=4.4e+02 Score=27.38 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003707 44 QCSHLDQSLVELNRNLESKLSVYASFTDR 72 (801)
Q Consensus 44 ~~~~l~~ql~~~~~~l~~~~~~~~~~~~~ 72 (801)
+...+++|+.+++.+|++....+..+...
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~~~~~~ 122 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWNQRTAE 122 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444455555555555555555433333
No 50
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=29.38 E-value=7e+02 Score=26.37 Aligned_cols=52 Identities=21% Similarity=0.205 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHhhhhh
Q 003707 34 AARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLTDLAS 89 (801)
Q Consensus 34 ~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 89 (801)
-|....+.......|+.||..+.+.+.. -..+..++.....++-..+..|..
T Consensus 20 ~D~~F~~~k~yi~~Le~~Lk~l~k~~~~----lv~~rkela~~~~efa~s~~~L~~ 71 (234)
T cd07664 20 SDAWFEEKQQQFENLDQQLRKLHASVES----LVCHRKELSANTAAFAKSAAMLGN 71 (234)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4667777777778888887777666653 222234444455555555555554
No 51
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=29.15 E-value=1.6e+03 Score=30.29 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=7.4
Q ss_pred HHHHHHHHhhHhhhhH
Q 003707 128 YAETALKLDSLVGDIE 143 (801)
Q Consensus 128 Y~~~~~~~e~l~~d~e 143 (801)
|-....+++.+.++++
T Consensus 877 ~~~a~~~le~ae~~l~ 892 (1353)
T TIGR02680 877 AAEQRARAARAESDAR 892 (1353)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444554444444
No 52
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=29.09 E-value=1.4e+03 Score=30.24 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=16.8
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHH
Q 003707 108 LGEELPALAKEVARVDMVRAYAET 131 (801)
Q Consensus 108 l~~~l~~l~~~l~~le~~~~Y~~~ 131 (801)
+..++...-.+|..++..+.+++-
T Consensus 318 ~~~~l~~~~~~L~~i~~~~~~ye~ 341 (1201)
T PF12128_consen 318 LNADLARIKSELDEIEQQKKDYED 341 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777753
No 53
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=28.86 E-value=2.4e+02 Score=25.93 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=25.7
Q ss_pred hhhhhhccCCHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003707 18 LSFLNDNLTNKEYHARAARLASELETQCSHLDQSLVEL 55 (801)
Q Consensus 18 ~~~ld~~~~s~~dl~~~~~l~~~l~~~~~~l~~ql~~~ 55 (801)
.-+|+.++.+.+|++.+..-+.+...+-..++++++.+
T Consensus 24 ~~~l~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 24 WLWLRRTYAKREDIEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34578888899999998665555555555555555544
No 54
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.24 E-value=5.2e+02 Score=24.49 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=21.1
Q ss_pred hhcHHHHHHHHHHHHHHHHH-----HHHHHHhhHhhhhHH
Q 003707 110 EELPALAKEVARVDMVRAYA-----ETALKLDSLVGDIED 144 (801)
Q Consensus 110 ~~l~~l~~~l~~le~~~~Y~-----~~~~~~e~l~~d~e~ 144 (801)
.+++.+-.+++.|+.-..-+ |...++|.|-.||+|
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 55556666666665543333 556677777777776
No 55
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=27.32 E-value=6.8e+02 Score=30.13 Aligned_cols=68 Identities=6% Similarity=-0.057 Sum_probs=34.3
Q ss_pred CCCHhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhhhcc-C---cccchhhHhHHHHHHHHHH
Q 003707 665 SVSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMS-N---AKFYDGGVVRFGCDMEVLF 735 (801)
Q Consensus 665 ~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~L~~~Il~~-n---~~Fs~~Ga~Qf~~D~~~L~ 735 (801)
.||......+..+.+.|.-..+ -++..-..++..+.+.++-|.. ++-. + -.--..-++.|..|...|.
T Consensus 451 ~IS~s~~~l~~L~~~~L~ea~~-~~~~~a~~l~~~~r~i~~ly~~--~vP~~h~~~l~~ip~~aalf~NdC~yla 522 (593)
T PF06248_consen 451 RISKSAQELVELAHQTLKEACK-SSERCAAQLFQTARDIFELYRA--VVPVYHKKLLESIPQQAALFHNDCMYLA 522 (593)
T ss_pred eechhHHHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHH--HccHHHHhhcccccHHHHhHhcchHHHH
Confidence 5677777777777766666522 2333344445544444444322 2221 1 0112456667777776543
No 56
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=26.63 E-value=5.6e+02 Score=24.34 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHhhhhh
Q 003707 35 ARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLTDLAS 89 (801)
Q Consensus 35 ~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 89 (801)
.+-+..|..-..++++++...-..-.+..-.-......+.+.+..++..+..|..
T Consensus 32 ~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~ 86 (132)
T PF10392_consen 32 STPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQS 86 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544433333333333333444444455555555544
No 57
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.08 E-value=1.4e+02 Score=27.46 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=18.1
Q ss_pred ccCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003707 24 NLTNKEYHARAARLASELETQCSHLDQSLVELNRN 58 (801)
Q Consensus 24 ~~~s~~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~ 58 (801)
++.|.+|+..+.-.+.+++.+...++.+++..++.
T Consensus 60 ~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 60 HLPTRDDVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred hCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444433
No 58
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=25.58 E-value=1e+03 Score=26.97 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=36.2
Q ss_pred HHhhccCCCC---hhhHHHHH-HHhchHHHHHHHHHHHHHHHhhhhhh-cc-cCchhHHHHHHHHhhHH------HHHHH
Q 003707 506 VVDRCRSLPT---VSLRSRFL-RLAGAPVIQKFLDCVLLRCQEAEGLT-AL-TDEDGLLKVANCVNAAH------YFESV 573 (801)
Q Consensus 506 iteRy~~L~~---~~~rl~Fl-~~iql~lLd~f~~rL~~~~~a~~~~~-~~-~g~~~l~rl~~~~nSa~------yi~~~ 573 (801)
|..|||+... +-.-++++ ...+-|++.-| ..+.+.+.+...-. .. .-...+.-+|+++-+++ |.+..
T Consensus 1 ifkr~r~~~~s~~l~~eik~vl~~~~~pll~l~-~~~~~~i~~~~~~~~~l~~~~~~l~lilKiF~sL~~~DLPe~fed~ 79 (370)
T PF08506_consen 1 IFKRYRYQFRSDELYTEIKYVLDKFAEPLLELF-KQTDQLIEANANNAASLKVLFEMLKLILKIFYSLNCQDLPEFFEDN 79 (370)
T ss_dssp HHGGGTTS---CTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHSSS--HHHHHT
T ss_pred CccccccccCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHccCcCcHHHHHH
Confidence 4568887754 22445555 33333444333 23333333211100 00 11234556788988875 67889
Q ss_pred HHhhcC
Q 003707 574 LREWCE 579 (801)
Q Consensus 574 L~eWse 579 (801)
|.+|-+
T Consensus 80 l~~wm~ 85 (370)
T PF08506_consen 80 LSEWME 85 (370)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999954
No 59
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=25.37 E-value=3e+02 Score=33.09 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=28.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003707 29 EYHARAARLASELETQCSHLDQSLVELNRNLESK 62 (801)
Q Consensus 29 ~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~ 62 (801)
.||+..-..+..++.+|+.|..|+..++.....+
T Consensus 242 ~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~ 275 (629)
T KOG0963|consen 242 TELEDAQQRIVFLEREVEQLREQLAKANSSKKLA 275 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 5677777789999999999999999988877765
No 60
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=24.25 E-value=5.3e+02 Score=23.26 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=13.9
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHH
Q 003707 108 LGEELPALAKEVARVDMVRAYAETAL 133 (801)
Q Consensus 108 l~~~l~~l~~~l~~le~~~~Y~~~~~ 133 (801)
+-+....+-..+.++..+-.|++.++
T Consensus 77 l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 77 LEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554
No 61
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.99 E-value=8.3e+02 Score=25.36 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003707 34 AARLASELETQCSHLDQSLVELNRNLESKLSVY 66 (801)
Q Consensus 34 ~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~ 66 (801)
+...+..+++|.+.++++|.++.....+-.+.-
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l 123 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEM 123 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455677888888888888888877766544433
No 62
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=23.91 E-value=3e+02 Score=26.65 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=24.5
Q ss_pred hhhhhhhccCCH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003707 17 TLSFLNDNLTNK-EYHARAARLASELETQCSHLDQSLVELNRNLES 61 (801)
Q Consensus 17 ~~~~ld~~~~s~-~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~ 61 (801)
+.++|+.+-..+ .+++.+.....+.+....+.+.+|.+++....+
T Consensus 29 i~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~ 74 (156)
T PRK05759 29 IMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAE 74 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888875544 444444555555555555555555555444443
No 63
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=23.69 E-value=1.1e+03 Score=28.02 Aligned_cols=149 Identities=13% Similarity=0.035 Sum_probs=0.0
Q ss_pred chhhhhhhhccCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHhhhhhhccCC
Q 003707 15 STTLSFLNDNLTNKEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLTDLASASRSP 94 (801)
Q Consensus 15 ~~~~~~ld~~~~s~~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 94 (801)
+.+.+-|..-.+....+ .|+-+.++.........+|.++...|. .+.+..+-=-..+..++.++..+.......
T Consensus 247 ~~~~~~l~~~~~~l~~~--~d~~~~~~~~~l~~~~~~l~d~~~~l~----~~~~~l~~dp~~L~ele~RL~~l~~LkrKy 320 (563)
T TIGR00634 247 GSLLEGLGEAQLALASV--IDGSLRELAEQVGNALTEVEEATRELQ----NYLDELEFDPERLNEIEERLAQIKRLKRKY 320 (563)
T ss_pred cCHHHHHHHHHHHHHHh--hhHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Q ss_pred CCCCCcchhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHhhhcccccccCCCCCCHHHHHHHHHHHH
Q 003707 95 SSVSDGGVRAKQILGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAVSSAMNNNRRSNSTQDSEDMRLLAIKALK 174 (801)
Q Consensus 95 ~~~~~~~~~~~~~l~~~l~~l~~~l~~le~~~~Y~~~~~~~e~l~~d~e~~~~s~~~~~~~~~~~~~~~~~al~a~~~L~ 174 (801)
|.+-+.. ++..+.+.++|..++.....++.+. .+.-.+...+.
T Consensus 321 g~s~e~l-------~~~~~~l~~eL~~l~~~~~~le~L~------------------------------~el~~l~~~l~ 363 (563)
T TIGR00634 321 GASVEEV-------LEYAEKIKEELDQLDDSDESLEALE------------------------------EEVDKLEEELD 363 (563)
T ss_pred CCCHHHH-------HHHHHHHHHHHHHHhCCHHHHHHHH------------------------------HHHHHHHHHHH
Q ss_pred HHHHHHhHhhhcchhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Q 003707 175 QAEDILTSVTKTRPQWARLVAAVDHRVDRALAMLRPQAIADHRALLSSLGWPP 227 (801)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~Lv~~v~~~v~~~~~~Lr~~l~~~l~~~L~~l~WP~ 227 (801)
..+ ..+...-...-+.+.+.+...|..+++|.
T Consensus 364 ~~a---------------------~~Ls~~R~~~a~~l~~~v~~~l~~L~m~~ 395 (563)
T TIGR00634 364 KAA---------------------VALSLIRRKAAERLAKRVEQELKALAMEK 395 (563)
T ss_pred HHH---------------------HHHHHHHHHHHHHHHHHHHHHHHhCCCCC
No 64
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=23.39 E-value=9.7e+02 Score=27.87 Aligned_cols=27 Identities=7% Similarity=0.012 Sum_probs=18.5
Q ss_pred hhhhhhhhhcHHHHHHHHHHHHHHHHH
Q 003707 103 RAKQILGEELPALAKEVARVDMVRAYA 129 (801)
Q Consensus 103 ~~~~~l~~~l~~l~~~l~~le~~~~Y~ 129 (801)
+..+.|++.+.....++.+++...+=.
T Consensus 403 E~n~~l~knq~vw~~kl~~~~e~~~~~ 429 (493)
T KOG0804|consen 403 EENKKLIKNQDVWRGKLKELEEREKEA 429 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444557888888888888877655433
No 65
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=23.23 E-value=3.3e+02 Score=27.02 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=25.0
Q ss_pred hhhhhhhhccCCH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003707 16 TTLSFLNDNLTNK-EYHARAARLASELETQCSHLDQSLVELNRNLESK 62 (801)
Q Consensus 16 ~~~~~ld~~~~s~-~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~ 62 (801)
++.+.|+.+=..+ .||+.+...-.+++....+.+++|.+++.+..+.
T Consensus 34 pI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I 81 (155)
T PRK06569 34 KAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRL 81 (155)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666654433 4555555555555555555555555555554443
No 66
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=23.22 E-value=3.2e+02 Score=26.27 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=41.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhH
Q 003707 32 ARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHV 80 (801)
Q Consensus 32 ~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (801)
+.+-.++..|+.++..|+.||.+..=+|.+-..||...++.-+.-+..+
T Consensus 54 ~~l~~llkqLEkeK~~Le~qlk~~e~rLeQEsKAyhk~ndeRr~ylaEi 102 (129)
T PF15372_consen 54 ESLNQLLKQLEKEKRSLENQLKDYEWRLEQESKAYHKANDERRQYLAEI 102 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4467799999999999999999999999999999988777666554444
No 67
>PRK13476 cytochrome b6-f complex subunit IV; Provisional
Probab=22.68 E-value=46 Score=33.12 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=12.7
Q ss_pred CccchHHHHHHHHHh
Q 003707 319 KPEFIFTLVYKITRD 333 (801)
Q Consensus 319 KPEw~f~~vl~~i~~ 333 (801)
+|||||-+++.+++.
T Consensus 76 ~PEWYFl~~yaiLr~ 90 (160)
T PRK13476 76 LPEWYLYPVFQILRV 90 (160)
T ss_pred hhhhHHHHHHHHHhh
Confidence 799999998877665
No 68
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=22.55 E-value=1.1e+03 Score=29.42 Aligned_cols=130 Identities=18% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHhhhhhhccCCCCCCCcchhhhhhhhh
Q 003707 31 HARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLTDLASASRSPSSVSDGGVRAKQILGE 110 (801)
Q Consensus 31 l~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 110 (801)
++++|+.+++|+.+++.+....+..+..++ .++..+++|..... .-++- ++
T Consensus 346 ~egfddk~~eLEKkrd~al~dvr~i~e~k~------------------nve~elqsL~~l~a-------erqeQ----id 396 (1265)
T KOG0976|consen 346 AEGFDDKLNELEKKRDMALMDVRSIQEKKE------------------NVEEELQSLLELQA-------ERQEQ----ID 396 (1265)
T ss_pred hcchhHHHHHHHHHHHHHHHhHHHHHHHHH------------------HHHHHHHHHHHHHH-------HHHHH----HH
Q ss_pred hcHHHHHHHHHH----HHHHHHH-HHHHHHhhHhhhhHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHHHHHHhHhhh
Q 003707 111 ELPALAKEVARV----DMVRAYA-ETALKLDSLVGDIEDAVSSAMNNNRRSNSTQDSEDMRLLAIKALKQAEDILTSVTK 185 (801)
Q Consensus 111 ~l~~l~~~l~~l----e~~~~Y~-~~~~~~e~l~~d~e~~~~s~~~~~~~~~~~~~~~~~al~a~~~L~~~~~~~~~~~~ 185 (801)
++...+-.+..+ |.|+.-+ +...+++.+-..+.++ +-.+.-++.|++-++ .+.+.
T Consensus 397 elKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~ma------------------d~Q~s~fk~Lke~ae--gsrrr 456 (1265)
T KOG0976|consen 397 ELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMA------------------DYQLSNFKVLKEHAE--GSRRR 456 (1265)
T ss_pred HHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHH------------------HHHHhhHHHHHHhhh--hhHhh
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhh
Q 003707 186 TRPQWARLVAAVDHRVDRALAMLR 209 (801)
Q Consensus 186 ~~~~~~~Lv~~v~~~v~~~~~~Lr 209 (801)
+-.+|..+|+++...-+...+--|
T Consensus 457 aIeQcnemv~rir~l~~sle~qrK 480 (1265)
T KOG0976|consen 457 AIEQCNEMVDRIRALMDSLEKQRK 480 (1265)
T ss_pred HHHHHHHHHHHHHHHhhChhhhcc
No 69
>PRK10869 recombination and repair protein; Provisional
Probab=22.24 E-value=1.2e+03 Score=27.87 Aligned_cols=19 Identities=11% Similarity=0.003 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhcCCCCCC
Q 003707 211 QAIADHRALLSSLGWPPPL 229 (801)
Q Consensus 211 ~l~~~l~~~L~~l~WP~~~ 229 (801)
.+.+.+...|+.++=|...
T Consensus 374 ~l~~~v~~~L~~L~m~~a~ 392 (553)
T PRK10869 374 ELAQLITESMHELSMPHGK 392 (553)
T ss_pred HHHHHHHHHHHHcCCCCcE
Confidence 4556677788899998743
No 70
>PRK04863 mukB cell division protein MukB; Provisional
Probab=22.07 E-value=2.1e+03 Score=29.43 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=55.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hhhhHhHHHHHhhhhhhccCCCCCCCcchhhh
Q 003707 29 EYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRV---SGLFTHVNVKLTDLASASRSPSSVSDGGVRAK 105 (801)
Q Consensus 29 ~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 105 (801)
..|..-..+...|+.+...++++-..+..++.++...+....... .+.+...+.++..+......-|..- +.++.
T Consensus 978 ~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~--~~~~~ 1055 (1486)
T PRK04863 978 EMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPA--DSGAE 1055 (1486)
T ss_pred hHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CccHH
Confidence 344444556677777777776666666666666666554443332 2233333333332222111111112 22233
Q ss_pred hhh-hhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 003707 106 QIL-GEELPALAKEVARVDMVRAYAETALKL 135 (801)
Q Consensus 106 ~~l-~~~l~~l~~~l~~le~~~~Y~~~~~~~ 135 (801)
+-+ .++ ..+..+|..=...+.|++.-.-.
T Consensus 1056 ~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~ 1085 (1486)
T PRK04863 1056 ERARARR-DELHARLSANRSRRNQLEKQLTF 1085 (1486)
T ss_pred HHHHHhH-HHHHHHHHHhHHHHHHHHHHHHH
Confidence 332 344 88899999999999999776533
No 71
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=21.66 E-value=4.2e+02 Score=25.53 Aligned_cols=14 Identities=14% Similarity=0.449 Sum_probs=8.3
Q ss_pred hhcHHHHHHHHHHH
Q 003707 110 EELPALAKEVARVD 123 (801)
Q Consensus 110 ~~l~~l~~~l~~le 123 (801)
+++++|..+|.+|.
T Consensus 109 ~dv~~L~~rId~L~ 122 (132)
T PF05597_consen 109 KDVEALSARIDQLT 122 (132)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666665554
No 72
>PHA03332 membrane glycoprotein; Provisional
Probab=21.45 E-value=9.2e+02 Score=31.09 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=40.3
Q ss_pred hhhhhhccCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 003707 18 LSFLNDNLTNKEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFT 78 (801)
Q Consensus 18 ~~~ld~~~~s~~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~ 78 (801)
..|+|.-+|-++|...+.+-+....+..+.+..+.......+.+..+.-....++..+.+.
T Consensus 880 ~~~~~~llqnaaaia~mksaIg~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs 940 (1328)
T PHA03332 880 TLYVNQLLQATAATAEMASKIGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVS 940 (1328)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHH
Confidence 4577888888888888888888888888777776666666665554444444444444333
No 73
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=21.39 E-value=89 Score=29.76 Aligned_cols=113 Identities=17% Similarity=0.215 Sum_probs=26.6
Q ss_pred hhhhhhhccCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh---hhHhHHHHHhhhhhhccC
Q 003707 17 TLSFLNDNLTNKEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSG---LFTHVNVKLTDLASASRS 93 (801)
Q Consensus 17 ~~~~ld~~~~s~~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~~~~~ 93 (801)
+..||-++ .--..+++|..+|+.....|++.|.+.- .+-=+.+.+-+....+ .+.+++.-+..+......
T Consensus 15 ~d~Fl~~~----~~~~~Le~L~~dL~~~~~~L~~~Li~lI---N~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~ 87 (133)
T PF06148_consen 15 VDEFLSSN----RRYVSLEDLRKDLRSYSKELKNELIELI---NDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVES 87 (133)
T ss_dssp ------------------------------------------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHc----cCCCCHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 45565542 2233467778888888888887776653 2211223333332222 222333322221111000
Q ss_pred CCCCCCcchhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhH
Q 003707 94 PSSVSDGGVRAKQILGEELPALAKEVARVDMVRAYAETALKLDSLVGDIE 143 (801)
Q Consensus 94 ~~~~~~~~~~~~~~l~~~l~~l~~~l~~le~~~~Y~~~~~~~e~l~~d~e 143 (801)
. .+ ...+ ..++++...++.+++...+.+++...++...+..+|
T Consensus 88 ~--~~-~l~~----~~~~i~~~l~~~~~l~~~k~~l~~~l~~~~~~~kle 130 (133)
T PF06148_consen 88 V--RD-ELDN----TQEEIEDKLEERKELREEKALLKLLLDISESLEKLE 130 (133)
T ss_dssp H--HH-S-ST----THHHHHHHHHHHHHHHHHHHT-SSSSHHH-------
T ss_pred H--HH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 0 00 0001 258888899999999999999888877766655444
No 74
>PRK11519 tyrosine kinase; Provisional
Probab=21.17 E-value=4.6e+02 Score=32.45 Aligned_cols=46 Identities=20% Similarity=0.207 Sum_probs=30.1
Q ss_pred hhhhhhhccCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003707 17 TLSFLNDNLTNKEYHARAARLASELETQCSHLDQSLVELNRNLESKLS 64 (801)
Q Consensus 17 ~~~~ld~~~~s~~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~ 64 (801)
++.|+++.+....+ .....+.-++.|..+++++|..++++|.+=+.
T Consensus 250 ~~~Yi~~~~~~k~~--~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 250 TRNYLEQNIERKSE--EASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677766554332 24556677777777888888888777776444
No 75
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=21.14 E-value=4.9e+02 Score=30.87 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003707 41 LETQCSHLDQSLVELNRNLESKLSVY 66 (801)
Q Consensus 41 l~~~~~~l~~ql~~~~~~l~~~~~~~ 66 (801)
+++|....++|+.+..++-.+..++.
T Consensus 129 lkKqi~k~~q~~~d~~kk~~e~~~~~ 154 (507)
T PF05600_consen 129 LKKQIAKCQQQLEDLDKKEEELQRSA 154 (507)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45555555666666665555544443
No 76
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=21.14 E-value=5.1e+02 Score=21.91 Aligned_cols=21 Identities=14% Similarity=0.012 Sum_probs=11.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 003707 31 HARAARLASELETQCSHLDQS 51 (801)
Q Consensus 31 l~~~~~l~~~l~~~~~~l~~q 51 (801)
|..+..-+..|=..|.+|+..
T Consensus 2 L~~Le~kle~Li~~~~~L~~E 22 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSE 22 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566655543
No 77
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=20.87 E-value=4.9e+02 Score=26.27 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=21.7
Q ss_pred hhhhhhhhccCCH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003707 16 TTLSFLNDNLTNK-EYHARAARLASELETQCSHLDQSLVELNRNL 59 (801)
Q Consensus 16 ~~~~~ld~~~~s~-~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l 59 (801)
.+..+|+.+=..+ .||+.....-.+++....+.+.+|.+++.+-
T Consensus 55 PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA 99 (181)
T PRK13454 55 RIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEA 99 (181)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677765544 3444444444444444444444444444333
No 78
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=20.83 E-value=1.1e+03 Score=25.56 Aligned_cols=152 Identities=13% Similarity=0.145 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHh-----------hhhhhccCCCCCCCcchhhhhh
Q 003707 39 SELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLT-----------DLASASRSPSSVSDGGVRAKQI 107 (801)
Q Consensus 39 ~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~l~~~~~~~~~~~~~~~~~~~~ 107 (801)
+.++++++.|..+|+..+.+|..-.....+.-..+-+...+++..+. .|..... .....
T Consensus 31 ~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~-------~~~~~--- 100 (291)
T PF10475_consen 31 EDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADE-------NLTKS--- 100 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHH---
Confidence 44677778888888888888776555332211222222222322222 1111110 00000
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHHHHHHhHhhhcc
Q 003707 108 LGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAVSSAMNNNRRSNSTQDSEDMRLLAIKALKQAEDILTSVTKTR 187 (801)
Q Consensus 108 l~~~l~~l~~~l~~le~~~~Y~~~~~~~e~l~~d~e~~~~s~~~~~~~~~~~~~~~~~al~a~~~L~~~~~~~~~~~~~~ 187 (801)
.=++-+..++-+++......++.+..+-.....++. .++ .+.=.+||.-+...+++. ..+.+.
T Consensus 101 -~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~----ll~--------~~dy~~Al~li~~~~~~l---~~l~~~- 163 (291)
T PF10475_consen 101 -GLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQE----LLE--------EGDYPGALDLIEECQQLL---EELKGY- 163 (291)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHh--------cCCHHHHHHHHHHHHHHH---Hhcccc-
Confidence 123334555555555555555555544433323332 121 222256666666666554 332221
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003707 188 PQWARLVAAVDHRVDRALAMLRPQAIADHRALLS 221 (801)
Q Consensus 188 ~~~~~Lv~~v~~~v~~~~~~Lr~~l~~~l~~~L~ 221 (801)
.| +..+..++..+...+..++..+|..+..
T Consensus 164 -~c---~~~L~~~L~e~~~~i~~~ld~~l~~~~~ 193 (291)
T PF10475_consen 164 -SC---VRHLSSQLQETLELIEEQLDSDLSKVCQ 193 (291)
T ss_pred -hH---HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 3334455665666666777777766655
No 79
>cd00290 cytochrome_b_C Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Probab=20.70 E-value=54 Score=32.05 Aligned_cols=15 Identities=47% Similarity=0.740 Sum_probs=12.7
Q ss_pred CccchHHHHHHHHHh
Q 003707 319 KPEFIFTLVYKITRD 333 (801)
Q Consensus 319 KPEw~f~~vl~~i~~ 333 (801)
||||||-+++.++|.
T Consensus 63 ~PeWYfl~~y~iLr~ 77 (147)
T cd00290 63 LPEWYFLPVYAILRA 77 (147)
T ss_pred hhhhHHHHHHHHHhc
Confidence 799999998877764
No 80
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.36 E-value=1.5e+03 Score=27.08 Aligned_cols=30 Identities=20% Similarity=0.156 Sum_probs=17.2
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 003707 109 GEELPALAKEVARVDMVRAYAETALKLDSL 138 (801)
Q Consensus 109 ~~~l~~l~~~l~~le~~~~Y~~~~~~~e~l 138 (801)
++.++.-..+...+-..-.|++.-.-+..+
T Consensus 170 L~~ie~~F~~f~~lt~~GD~~~A~eil~~l 199 (560)
T PF06160_consen 170 LENIEEEFSEFEELTENGDYLEAREILEKL 199 (560)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455566666666666666666554444443
No 81
>COG3679 Regulatory protein involved in competence development and sporulation [Replication, recombination and repair; Signal transduction mechanisms]
Probab=20.22 E-value=7.5e+02 Score=23.46 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=47.6
Q ss_pred hhhhhhhhHhHHHHHhhhhhhccCCCCCCCcchhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHhh
Q 003707 70 TDRVSGLFTHVNVKLTDLASASRSPSSVSDGGVRAKQILGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAVSS 148 (801)
Q Consensus 70 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~le~~~~Y~~~~~~~e~l~~d~e~~~~s 148 (801)
.+.+...+..++..+..+...-- ++..+|.. .+.+++.+.++|+.-+.+..|++.=.+++.++++|..-++.
T Consensus 35 d~eA~~lf~~F~~~q~~~q~~q~----~G~~~d~~---~~~~~q~~~~~i~~~e~v~~f~eaE~~L~~~l~el~~iI~~ 106 (118)
T COG3679 35 DEEAKKLFEEFRQLQEQFQEKQR----FGYEPDYE---EVTKAQELKQEIQLNEKVSAFMEAEQALSSLLDELNKIIAE 106 (118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----cCCCCcHH---HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566655444443333211 12233222 14599999999999999999999999999999999875433
No 82
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=20.16 E-value=6.6e+02 Score=23.77 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=24.6
Q ss_pred hhhhhhhccCCH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003707 17 TLSFLNDNLTNK-EYHARAARLASELETQCSHLDQSLVELNRNLES 61 (801)
Q Consensus 17 ~~~~ld~~~~s~-~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~ 61 (801)
+.++||.+=..+ .+|+.+...-.+.+....+-+.+|.+++..-.+
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~ 75 (140)
T PRK07353 30 VGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQA 75 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788775554 445555555555555555555555555444443
Done!