Query 003707
Match_columns 801
No_of_seqs 162 out of 208
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 18:35:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003707.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1755-1759//hhsearch_pdb/003707hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fhn_A Protein transport prote 1.0 1 1 781.4 50.3 643 24-801 5-704 (706)
2 3hr0_A COG4; conserved oligome 1.0 1 1 65.9 17.1 122 669-799 126-252 (263)
3 2fji_1 Exocyst complex compone 1.0 1 1 53.2 29.8 288 446-768 10-327 (399)
4 2a2f_X Exocyst complex compone 1.0 1 1 45.4 14.5 202 528-760 106-317 (325)
5 3swh_A MUNC13-1, protein UNC-1 1.0 1 1 44.2 23.4 281 446-768 12-333 (341)
6 3mmi_A Myosin-4; globular tail 1.0 1 1 34.4 18.3 126 665-796 183-309 (386)
7 2f6h_X Myosin-2, type V myosin 1.0 1 1 29.0 19.4 123 667-796 201-326 (419)
8 1vf5_B Subunit IV; photosynthe 1.0 1 1 22.4 1.1 16 319-334 76-91 (160)
9 3etv_A Protein transport prote 1.0 1 1 21.9 11.7 145 25-228 5-151 (355)
10 3cx5_C Cytochrome B-C1 complex 1.0 1 1 18.8 1.8 16 319-334 270-285 (385)
No 1
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=781.38 Aligned_cols=643 Identities=14% Similarity=0.157 Sum_probs=479.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 06998878758989999999998997899999999998887665444545423676898875522101699988875213
Q 003707 24 NLTNKEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLTDLASASRSPSSVSDGGVR 103 (801)
Q Consensus 24 ~~~s~~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 103 (801)
.+++..||..+|+.+.+++.|+..|-.+|..++.... .-..........+.+|-..-..+... ..-..+
T Consensus 5 ~~~~i~dl~~i~~~i~~~~~~r~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~s~~~~-------~~l~~~ 73 (706)
T 3fhn_A 5 SMNGIDDLLNINDRIKQVQNERNELASKLQNLKQSLA----SNDTEVALSEVIAQDIIEVGASVEGL-------EQLRAK 73 (706)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCTTCCCCHHHHHHHHHSCSSHHHH-------HHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHCCCCHHHH-------HHHHHH
T ss_conf 5000678886799999999999999999999752323----45257899999999998631448999-------999998
Q ss_pred HHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4545-533007999999999999999999999856754167877532010001478899778999999999999998767
Q 003707 104 AKQI-LGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAVSSAMNNNRRSNSTQDSEDMRLLAIKALKQAEDILTS 182 (801)
Q Consensus 104 ~~~~-l~~~l~~l~~~l~~le~~~~Y~~~~~~~e~l~~d~e~~~~s~~~~~~~~~~~~~~~~~al~a~~~l~~~~~~~~~ 182 (801)
+|.. ++.+|+.+.++-..++.... .+.++|.-...+-. +++..- -+..++++++.+..
T Consensus 74 yg~l~il~~l~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~---------------~~~~~~---~~~~l~~~~~~~~~ 132 (706)
T 3fhn_A 74 YGDLQILNKLEKVAVQQTQMQAGVD---KLDSFERQLDELAE---------------QPPDQF---TLDDVKALHSKLTS 132 (706)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTT---------------SCGGGC---CHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---------------CCCCCC---CHHHHHHHHHHHHH
T ss_conf 1880999999999999999998999---99999999987630---------------452003---59999999999998
Q ss_pred H----HHC---CHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5----202---5004---6799-999889999999966999999999999559999888666799665576456786334
Q 003707 183 V----TKT---RPQW---ARLV-AAVDHRVDRALAMLRPQAIADHRALLSSLGWPPPLSILASSNPETRASSEVSNPLFT 251 (801)
Q Consensus 183 ~----~~~---~~~~---~~Lv-~~v~~~v~~~~~~Lr~~~~~~l~~~L~~l~WP~~~~~~~~~~~~~~~~~~~~~pl~~ 251 (801)
+ .++ .++. -.+- .++..-.+..+..++..++++|+++|+++|||.+...+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ls~~l~~~L~~~kWp~~~~~~~------------------ 194 (706)
T 3fhn_A 133 VFATVPQINNIDSQYAAYNKLKSKVTGKYNDVIIQRLATNWSNTFDQKLLEAQWDTQKFAST------------------ 194 (706)
T ss_dssp HHTTSCCCCCTTSTHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTTSTTCCGG------------------
T ss_pred HHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC------------------
T ss_conf 76300234313455555310017799999999999999999999999999869997213786------------------
Q ss_pred CCCCHHHHHHHHHH---HHHHHHHHHHH-----HHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCC-CC-CCCC
Q ss_conf 63104789999999---99645423555-----4332101685431-2577513399948569874441233-32-4683
Q 003707 252 MRGDLKHQYCENFL---ALCRLQELQRQ-----RKSRQLEGHNREL-ALHQPLWAIEELVNPIAVASQHHFS-KW-TDKP 320 (801)
Q Consensus 252 ~~~~~~~~~~~~f~---~L~~LQ~~~~~-----~~~~~~~~~~~~~-~~~~~Lw~ie~Lv~Pl~~RF~YHF~-Nr-ldKP 320 (801)
..+...+|.++|. +|++||.|+.. ...+. ....+ ..+|.|||+++|++||.+||+|||+ ++ .|||
T Consensus 195 -~~~~~~~~~~~~~~l~kL~~Lq~p~~~~~~~~~~~~~---~~~~~~~~~p~llp~~~L~~P~~~RFrYHF~g~k~TdKp 270 (706)
T 3fhn_A 195 -SVGLVKCLRENSTKLYQLSLLYLPLEEETQNGDSERP---LSRSNNNQEPVLWNFKSLANNFNVRFTYHFHATSSSSKI 270 (706)
T ss_dssp -GSHHHHHHHHHHHHHHHHHTTCCCCCCC---------------------CCCHHHHHHHHHHHHHHHHHTCSCCCHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf -1457999999988889999882664223443210124---443357898630019999999998855512899988880
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 00589999999850884896309999840---------235656199999999999999999623345553222232103
Q 003707 321 EFIFTLVYKITRDYVDSMDELLQPLVDEA---------LLVGYSCREEWISAMVTALLTYLAKEIFPVYVDQLDEESISG 391 (801)
Q Consensus 321 Ew~f~~vl~~i~~~~~fl~~~lqp~l~~~---------~~~~~~~~~efi~~Lv~~l~~kL~~~i~p~L~~~~~d~~~~~ 391 (801)
|||| +|+++++||+++++ +...+.++.+||++|++++++|++.++ |.
T Consensus 271 Ewyf-----------~Fl~~~lq~~L~~~~~~f~d~~~~~~~~~~~~eFI~~LL~~vreKl~~~l-~~------------ 326 (706)
T 3fhn_A 271 ETYF-----------QFLNDYLAENLYKCINIFHDDCNGLTKPVIHEQFINYVLQPIRDKVRSTL-FQ------------ 326 (706)
T ss_dssp HHHH-----------HHHHHHHHHHHHHHHHHHCBGGGTBCHHHHHHHHHHHHSHHHHHHHHHHH-HT------------
T ss_pred HHHH-----------HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-CC------------
T ss_conf 8999-----------99999999999998987414432321567999999987999999999672-62------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 33003567889999999899999974135885434445886676651275147841899999999999999888854167
Q 003707 392 VQSQARISWLHLVDLMISFDKRIKSLVEQSGILFSLQEDGNLQKISSLSVFCDRPDWLDIWAQIELADTLENLKHDVDDE 471 (801)
Q Consensus 392 ~~~~~~sl~~HlIdE~l~FD~~Lr~~~~y~~~~~~~~~~~~w~gls~~~vl~~~~~~f~~Wl~~E~~~A~~r~~~Ii~s~ 471 (801)
.++++|+|||+|+++||++||+.|+|+|. |++. ++ .++||++|+++|++||++||++|+++|
T Consensus 327 ---~d~~lLsHlI~Ell~FD~~Lr~~~~Y~~~-----------Gl~~--li--~~~~f~~WL~~Ek~fA~~rf~~Ii~s~ 388 (706)
T 3fhn_A 327 ---NDLKTLIVLISQILATDKNLLNSFHYHGL-----------GLVS--LI--SDEVWEKWINYEVEMANRQFINITKNP 388 (706)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHHHTCCCSC-----------CGGG--GS--CHHHHHHHHHHHHHHHHHHHHHTTSSG
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHCCCCCC-----------CCHH--CC--CHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ---56689999999999999999996499998-----------6000--15--478999999999999999999987197
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 7762000111134798888888349999999999986--------15588883567898998522889999999999877
Q 003707 472 RNWKMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVD--------RCRSLPTVSLRSRFLRLAGAPVIQKFLDCVLLRCQ 543 (801)
Q Consensus 472 daw~i~~d~~~~~~~~~~~K~p~~A~~~~~LL~~it~--------Ry~~L~~~~~rl~Fl~~iql~lLd~f~~rL~~~~~ 543 (801)
| + .|+||.+|++||++||+ ||++||+++||++| .||+.|+|.||+||... .
T Consensus 389 d----------------~--lt~sA~~~~~LLe~It~~l~~~~~~rY~~L~~~~~Kl~f--~IqiqL~d~Y~~~L~~~-s 447 (706)
T 3fhn_A 389 E----------------D--FPKSSQNFVKLINKIYDYLEPFYDLDFDLLVRYKLMTCS--LIFMNLTSSYLDYILTV-D 447 (706)
T ss_dssp G----------------G--GGGHHHHHHHHHHHHHHHHSHHHHCCCGGGGHHHHHHHH--HHHHHHHHHHHHHHHTC-C
T ss_pred C----------------C--CCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHH--HHHHHHHHHHHHHHHCC-C
T ss_conf 6----------------5--877999999999999872445421321644126899999--99986279999998075-5
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 63211101371359899999943999999998612780557753874567531038899888888898877717899999
Q 003707 544 EAEGLTALTDEDGLLKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLETSLSDNSRSEWPVGGSRSGIFDEEIKKL 623 (801)
Q Consensus 544 a~~~~~~~~g~~~l~rl~~~~nSa~yi~~~L~eWsed~~FleL~~~~~~r~~~~~~~~~~s~~~~~~~~~siFde~i~~y 623 (801)
.... ..+.+..+..-|..++++.||.++|+|||||+|||+||++++.+ .++.+|||||++|+.|
T Consensus 448 ~lgr--~~tke~~~~~g~~~L~~L~~V~~~L~dWsddvfFLeLw~~l~~~--------------t~s~~gSIFDetIs~Y 511 (706)
T 3fhn_A 448 SLNE--TRTKEQELYQTMAKLQHVNFVYRKIKSLSSNFIFIQLTDIVNST--------------ESKKYNSLFQNVENDY 511 (706)
T ss_dssp CSCS--EEEHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH--------------TTCCCSCTTHHHHHHH
T ss_pred CCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC--------------CCCCCCCCHHHHHHHH
T ss_conf 2034--56658888878999999999999999966894168789987165--------------6766676089999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHHHHC-CCHHHHH
Q ss_conf 999999-99999999999999988987511364454345-------66677875899999999999999940-3977799
Q 003707 624 EEFRTE-WVEKISVVILRGFDALSRDYVKNRRQWQEKSE-------ENWSVSEMLVGALDYLQGKMSIIEGS-LNAMDFI 694 (801)
Q Consensus 624 ~~l~~~-~~~~iv~~i~~~~~~~lk~Y~~~~~~w~~~~~-------~~~~~S~el~~~L~~L~~~L~~L~~~-L~~~~f~ 694 (801)
++++.+ +.++|+++++++|++++|+|++ +.+|.+.+. ..++||+++|+++++|++.|++|++. |++++|.
T Consensus 512 ~~L~~~~~~~~Iv~~v~~eik~~lK~Y~k-~s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L~~~lL~~~~f~ 590 (706)
T 3fhn_A 512 EKAMSTDMQNSIVHRIQKLLKETLRNYFK-ISTWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINKLDSMDIPLAISL 590 (706)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHTHHHHH-CCGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99998889999999999999999987748-16685667877666555688988899999999999999998137778999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHH------HHH
Q ss_conf 99999999999999986600575316335968999999999998643069898645189998702789178------987
Q 003707 695 MVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLRPEGFFPKTSEGLKLLKMREEQ------LQG 768 (801)
Q Consensus 695 ~i~r~ia~~i~~~L~~~Ii~~n~~Fs~~Ga~Ql~~D~~~L~~~f~~~~~rpe~~f~~l~Ea~~LL~l~~~~------l~~ 768 (801)
+|||+++..|++|||++|++.| +||++||+||.+||++||.+|+.+...|++.|+++.|+|+||+|+.+. .+.
T Consensus 591 ~IwR~ia~~Ld~yL~e~IL~~n-kFS~~Ga~Qf~~D~~~L~~v~~lp~~~~~~~~~~L~E~l~LL~L~~d~~~~~f~~~~ 669 (706)
T 3fhn_A 591 KVKNELLNVIVNYFTESILKLN-KFNQNGLNQFLHDFKSLSSILSLPSHATNYKCMSLHELVKILKLKYDPNNQQFLNPE 669 (706)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTS-CBCHHHHHHHHHHHHHHHTTSCCCTTCCCHHHHHHHHHHHHHGGGGCGGGTTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 9999999999999999998608-648888999999999999985688841456779999999981798874220677898
Q ss_pred HHHC--HHHHHHHHCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 5414--68688840988369999999997312589
Q 003707 769 GVLG--GEKWMKQSGITHLSVAEAEKIEKNRVFMN 801 (801)
Q Consensus 769 ~l~~--~~~~L~elgI~~Ls~~ea~~iL~rRv~~~ 801 (801)
+++. .+++++.++|++|+++|++++|+|++||+
T Consensus 670 y~~~~~~~~l~~~~~i~~l~~~~i~d~lyr~~ygn 704 (706)
T 3fhn_A 670 YIKTGNFTSLKEAYSIKYLKDTKIQDALYRIIYGN 704 (706)
T ss_dssp HHHHCCCSHHHHHHTCSSSCHHHHHHHHHHHHTTS
T ss_pred HHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 87017748899864864688789999999998425
No 2
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=65.95 Aligned_cols=122 Identities=17% Similarity=0.221 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH---HHCCC
Q ss_conf 589999999999999994039777999999999999999998660057531633596899999999999864---30698
Q 003707 669 MLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRA---WCLRP 745 (801)
Q Consensus 669 el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~i~~~L~~~Ii~~n~~Fs~~Ga~Ql~~D~~~L~~~f~~---~~~rp 745 (801)
-.-.....+...|.-+++.|.+..|..+...++..|...|-..|.. . +||+-||.||..|+.++...+.. |..|
T Consensus 126 ~~~~F~~~w~~ll~p~k~~Lt~~~y~~Ll~~~~~~la~~lE~~i~~-~-~fn~lGal~LdrDvr~li~~~~~~~~~~lR- 202 (263)
T 3hr0_A 126 WVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLK-S-TFNRLGGLQFDKELRSLIAYLTTVTTWTIR- 202 (263)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTT-C-CBCHHHHHHHHHHHHHHHHHHHTTSCTTHH-
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH-C-CCCCHHHHHHHHHHHHHHHHHHHCCCHHHH-
T ss_conf 9999999999999999987185799999999999999999999982-7-707055899999999999999704661166-
Q ss_pred CCCHHHHHHHHHCCCCCHHH-HHHHHHCHHHHHHHHCC-CCCCHHHHHHHHHHCCC
Q ss_conf 98645189998702789178-98754146868884098-83699999999973125
Q 003707 746 EGFFPKTSEGLKLLKMREEQ-LQGGVLGGEKWMKQSGI-THLSVAEAEKIEKNRVF 799 (801)
Q Consensus 746 e~~f~~l~Ea~~LL~l~~~~-l~~~l~~~~~~L~elgI-~~Ls~~ea~~iL~rRv~ 799 (801)
-.|-|+.+.|.||+|+..+ +.++. +. ..-|+ ..||+.|+++|+.+|++
T Consensus 203 -ekF~RL~QI~~lLnle~~eev~d~~-~~----~~~~~~W~Ls~~E~r~il~lRvD 252 (263)
T 3hr0_A 203 -DKFARLSQMATILNLERVTEILDYW-GP----NSGPLTWRLTPAEVRQVLALRID 252 (263)
T ss_dssp -HHTHHHHHHHHHHTCSSGGGGGGTS-GG----GGTTCCCCSCHHHHHHHHTTBTT
T ss_pred -HHHHHHHHHHHHHCCCCHHHHHHHH-CC----CCCCCCCCCCHHHHHHHHHHHCC
T ss_conf -8999999999998479768999873-34----67885334799999999985636
No 3
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=53.21 Aligned_cols=288 Identities=7% Similarity=0.034 Sum_probs=177.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 41899999999999999888854167-77620001111347988888883499999999999861558888356789899
Q 003707 446 PDWLDIWAQIELADTLENLKHDVDDE-RNWKMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLPTVSLRSRFLR 524 (801)
Q Consensus 446 ~~~f~~Wl~~E~~~A~~r~~~Ii~s~-daw~i~~d~~~~~~~~~~~K~p~~A~~~~~LL~~it~Ry~~L~~~~~rl~Fl~ 524 (801)
+...+.|++.....-.+=++.|++.+ ..|.-. +..|..+.++.-.+..+..+..++..-.++.....+...-.+.+.
T Consensus 10 ~~L~~~Y~~~i~~~~~eW~~nil~~E~~~w~~r--~~~P~~d~~g~~~t~~~~dvfqml~eql~~a~~~~~~~l~~~v~~ 87 (399)
T 2fji_1 10 ETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLER--STPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGVVE 87 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CSCCEECTTSCEECHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 999999999999999999999999999998846--899986999885288647999999999999984797300999999
Q ss_pred HHCHHHHHHH----HHHHHHHHHHHHH------HH-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 8522889999----9999998776321------11-------01371359899999943999999998612780557753
Q 003707 525 LAGAPVIQKF----LDCVLLRCQEAEG------LT-------ALTDEDGLLKVANCVNAAHYFESVLREWCEDVFFLEMA 587 (801)
Q Consensus 525 ~iql~lLd~f----~~rL~~~~~a~~~------~~-------~~~g~~~l~rl~~~~nSa~yi~~~L~eWsed~~FleL~ 587 (801)
.. +..+..| ...+...++.+-. -+ .......++.+|.+.|.+..+..-....... |.++.
T Consensus 88 ~~-~~~L~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~liA~~Nn~~~~~e~~~~l~~~--~~~~~ 164 (399)
T 2fji_1 88 RF-SDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSK--YGKLV 164 (399)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGSCCTTTCCCSCHHHHHHHHHHHHHHHHHHHHHHHHH--HHTTS
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH--HHHHC
T ss_conf 99-9999999999999999999987520100012422247654565418786566554488899999999999--99862
Q ss_pred H-HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 8-745675310388998888888988777178999999999999999999999999998898751136445434566677
Q 003707 588 L-DQDNQLETSLSDNSRSEWPVGGSRSGIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQEKSEENWSV 666 (801)
Q Consensus 588 ~-~~~~r~~~~~~~~~~s~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~i~~~~~~~lk~Y~~~~~~w~~~~~~~~~~ 666 (801)
. .... ...+-|+++...|..+...+...++..+...++..+..-+... |-.
T Consensus 165 ~~~~~~------------------~~~~~l~~~~~~f~~l~~~~~~~L~~~if~dl~p~~~~lft~~--W~~-------- 216 (399)
T 2fji_1 165 SKVYEK------------------QITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKT--WYM-------- 216 (399)
T ss_dssp CHHHHH------------------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTHHHHTTTTSGG--GTT--------
T ss_pred CHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HCC--------
T ss_conf 677888------------------8899999999999999999999999999998899999857703--008--------
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 875899999999999999940397779999999999999999986600575316---33596899999999999864306
Q 003707 667 SEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMSNAKFY---DGGVVRFGCDMEVLFGVFRAWCL 743 (801)
Q Consensus 667 S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~i~~~L~~~Ii~~n~~Fs---~~Ga~Ql~~D~~~L~~~f~~~~~ 743 (801)
++-....+.++..++..++..|.+..|..++..+...+.......+.. ..+|+ ..|+.|+..|...+...|..+..
T Consensus 217 ~~~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~-~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~~ 295 (399)
T 2fji_1 217 GSQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSF-EHSFKNKNNKFLEAMKRDFEIFYQLFVKVLD 295 (399)
T ss_dssp CCHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGG-CCCCCCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 767999999999999999998086999999999999999999999846-7777840599999999999999999998556
Q ss_pred CCC-------CCHHHHHHHHHCCCCCH-HHHHH
Q ss_conf 989-------86451899987027891-78987
Q 003707 744 RPE-------GFFPKTSEGLKLLKMRE-EQLQG 768 (801)
Q Consensus 744 rpe-------~~f~~l~Ea~~LL~l~~-~~l~~ 768 (801)
... ..|..+..-.. |+.+. +.+.+
T Consensus 296 ~~~~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~ 327 (399)
T 2fji_1 296 GNESKDTLITQNFTVMEFFMD-LSCEPIDSILD 327 (399)
T ss_dssp TCTTHHHHHHHHHHHHHHHHH-HHHSCGGGHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-HCCCCHHHHHH
T ss_conf 532025778779999999997-36895777999
No 4
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=45.35 Aligned_cols=202 Identities=12% Similarity=0.092 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 288999999999987763211101--371359899999943999999998612780557753874567531038899888
Q 003707 528 APVIQKFLDCVLLRCQEAEGLTAL--TDEDGLLKVANCVNAAHYFESVLREWCEDVFFLEMALDQDNQLETSLSDNSRSE 605 (801)
Q Consensus 528 l~lLd~f~~rL~~~~~a~~~~~~~--~g~~~l~rl~~~~nSa~yi~~~L~eWsed~~FleL~~~~~~r~~~~~~~~~~s~ 605 (801)
-+++.++.++|+.+--. +.+... .+..++..+..++....|++.++.++.+-+. . .. +.+
T Consensus 106 dd~lrks~d~LL~~~v~-~~L~~~i~~~~~~l~qi~Qi~iNl~~le~ac~~le~~l~-----~-~~-----~~~------ 167 (325)
T 2a2f_X 106 AAMVRKAANLLLTRSFS-GCLSVVFRQPSITLTQLIQIIIDTQYLEKAGPFLDEFVC-----H-MT-----NTE------ 167 (325)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHTCTTSCHHHHHHHHHHHHHHHTTHHHHHHHHH-----H-HH-----TCC------
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-HH-----CCC------
T ss_conf 89999999999999999-999999854478699999999979999999999999999-----9-82-----887------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 88889887771789999999999999999999999999988987511364454345666778758999999999999999
Q 003707 606 WPVGGSRSGIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQEKSEENWSVSEMLVGALDYLQGKMSIIE 685 (801)
Q Consensus 606 ~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~i~~~~~~~lk~Y~~~~~~w~~~~~~~~~~S~el~~~L~~L~~~L~~L~ 685 (801)
..++ -...+.|...++.+++.|...+..-+.+-+ .... -.|++.+ .+..||.-+...+..|+..+.. -
T Consensus 168 -----~~~~--l~a~~~f~~~r~~Ae~~I~~~v~~KIDdfl-~la~--yDW~~~~-~~~~ps~yi~dli~fL~~~f~s-l 235 (325)
T 2a2f_X 168 -----RSVS--QTPSAMFHVARQDAEKQVGLRICSKIDEFF-ELSA--YDWLLVE-PPGIASAFITDMISYLKSTFDS-F 235 (325)
T ss_dssp -----C---------CCSCCCTTHHHHHHHHHHHHHHHHHH-TTCC--TTCC-----CCSCCHHHHHHHHHHHHHHHT-T
T ss_pred -----CCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCC--CCCCCCC-CCCCCCHHHHHHHHHHHHHHHH-H
T ss_conf -----5331--117899999999999999999998999998-7603--6887888-9998568999999999999999-8
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCHHHHHHHHH
Q ss_conf 403977799999999999999999866005-7531633596899999999999864306989-------86451899987
Q 003707 686 GSLNAMDFIMVWRSLATGVDRLLFRGILMS-NAKFYDGGVVRFGCDMEVLFGVFRAWCLRPE-------GFFPKTSEGLK 757 (801)
Q Consensus 686 ~~L~~~~f~~i~r~ia~~i~~~L~~~Ii~~-n~~Fs~~Ga~Ql~~D~~~L~~~f~~~~~rpe-------~~f~~l~Ea~~ 757 (801)
..||+.....++.....-|.+.|++-++-. -.+||.+|+.||..|+..+-.-.+. ++.|. ..|-.+++.+.
T Consensus 236 ~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~av~~~~~Dv~~lE~fa~~-~~v~~l~~~~L~~~F~eLrQli~ 314 (325)
T 2a2f_X 236 AFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFAAS-EPVPGLKEGELSKYFLRNRQLLD 314 (325)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHHHHHTC------CCTTHHHHHHHHHHHHHHHTT-CSSSSCCSSTTGGGGHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 73999999999999999999999998648611432999999899999999999872-78887552269999899999999
Q ss_pred CCC
Q ss_conf 027
Q 003707 758 LLK 760 (801)
Q Consensus 758 LL~ 760 (801)
||-
T Consensus 315 Ll~ 317 (325)
T 2a2f_X 315 LLI 317 (325)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 987
No 5
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=44.24 Aligned_cols=281 Identities=12% Similarity=0.087 Sum_probs=181.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC--CHHHH----
Q ss_conf 418999999999999998888541677762000111134798888888349999999999986155888--83567----
Q 003707 446 PDWLDIWAQIELADTLENLKHDVDDERNWKMKVQKGALLFGSEDYRSPTVSSAFLQRLSSVVDRCRSLP--TVSLR---- 519 (801)
Q Consensus 446 ~~~f~~Wl~~E~~~A~~r~~~Ii~s~daw~i~~d~~~~~~~~~~~K~p~~A~~~~~LL~~it~Ry~~L~--~~~~r---- 519 (801)
.....+|++.-.+-+..+++..++.++ |.. .. ...+..|-..|+..+...+..+.+-.+.|. .+.+-
T Consensus 12 ~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk-~~~----~~--~~~~~~~hSsSvvDif~~~~Q~~~~~~~L~WpD~~~~~~f~ 84 (341)
T 3swh_A 12 EPFVIQWLDENEEVSRDFLHGALERDK-KDG----FQ--QTSEHALFSCSVVDVFSQLNQSFEIIKKLECPDPQIVGHYM 84 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHT----CC--CSSSSCCSCTHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCC----CC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 999999999989999999999986213-587----55--35567656555999999999999999977999889999999
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHC
Q ss_conf 898998522889999999999877632111013713598999999439999999986127805577538-7456753103
Q 003707 520 SRFLRLAGAPVIQKFLDCVLLRCQEAEGLTALTDEDGLLKVANCVNAAHYFESVLREWCEDVFFLEMAL-DQDNQLETSL 598 (801)
Q Consensus 520 l~Fl~~iql~lLd~f~~rL~~~~~a~~~~~~~~g~~~l~rl~~~~nSa~yi~~~L~eWsed~~FleL~~-~~~~r~~~~~ 598 (801)
.+|...| ...+-.|-+.+..+...+- +..|...+|.++|...|+...|.. +|-+|.- .+
T Consensus 85 t~l~~~i-~~~~~~Y~~~l~~~~~~~~------~~e~~~~~Cv~lNNie~lR~~L~~-----l~~~l~~~~l-------- 144 (341)
T 3swh_A 85 RRFAKTI-SNVLLQYADIVSKDFASYC------SKEKEKVPCILMNNTQQLRVQLEK-----MFEAMGGKEL-------- 144 (341)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHC------CTTSCHHHHHHHHHHHHHHHHHHH-----HHHHTTTTTS--------
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHH------HHHCCCCHHHHCCCHHHHHHHHHH-----HHHHCCHHHH--------
T ss_conf 9999999-9999999999999987652------332124645641619999999999-----8886164357--------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCC----------CCCC
Q ss_conf 88998888888988777178999999999999999999999999998898751136445---4345----------6667
Q 003707 599 SDNSRSEWPVGGSRSGIFDEEIKKLEEFRTEWVEKISVVILRGFDALSRDYVKNRRQWQ---EKSE----------ENWS 665 (801)
Q Consensus 599 ~~~~~s~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~i~~~~~~~lk~Y~~~~~~w~---~~~~----------~~~~ 665 (801)
..-..+.+..+..-....++.+...+...+...++.|.+.- .|. ..+. ....
T Consensus 145 --------------~~~~~~~~~~lq~~l~~vl~~l~~~~~~~~~~~i~~~v~~m-~~~l~~i~~~~~~~~~~~~~~~~~ 209 (341)
T 3swh_A 145 --------------DAEASGTLKELQVKLNNVLDELSHVFATSFQPHIEECVRQM-GDILSQVKGTGNVPASACSSVAQD 209 (341)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-HHHHHTCC-----------CHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf --------------89999999999999999999999999999888899999999-999976105566784323543346
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CCCCCHHHHHHHHHHH
Q ss_conf 78758999999999999999403977799999999999999999866005--------------7531633596899999
Q 003707 666 VSEMLVGALDYLQGKMSIIEGSLNAMDFIMVWRSLATGVDRLLFRGILMS--------------NAKFYDGGVVRFGCDM 731 (801)
Q Consensus 666 ~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~i~~~L~~~Ii~~--------------n~~Fs~~Ga~Ql~~D~ 731 (801)
++..+.|.+.+|...|..+...|....|.++-+.+-..+-..|..-|+.. ...|+..-...+..++
T Consensus 210 ~~~ai~PLm~yLd~~L~~l~~~L~~~~f~rvL~~lW~~~l~~l~~~i~lP~~~~~~~~~~~~~~~r~~~~~~~~~l~~~L 289 (341)
T 3swh_A 210 ADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTIVLPPEFSKLKDHMVREEAKSLTPKQCAVVELAL 289 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSSCC----------CTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 78899999999999999999998788899999999999999999997366224566766404556799999999999999
Q ss_pred HHHHHHHHHHH-CCCCC------CHHHHHHHHHCCCCCHHHHHH
Q ss_conf 99999986430-69898------645189998702789178987
Q 003707 732 EVLFGVFRAWC-LRPEG------FFPKTSEGLKLLKMREEQLQG 768 (801)
Q Consensus 732 ~~L~~~f~~~~-~rpe~------~f~~l~Ea~~LL~l~~~~l~~ 768 (801)
..|...|..-. +-|.. .+..+...+.|-.++.++|.+
T Consensus 290 ~~L~~fFhA~G~GL~~~~Leks~~~~~l~~~L~L~~~~T~~LI~ 333 (341)
T 3swh_A 290 DTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLYTQATDLLIK 333 (341)
T ss_dssp HHHHHHHHGGGTSCCHHHHHTCHHHHHHHHHHHHC---------
T ss_pred HHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99999864599999978870476699999999886499899999
No 6
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=34.42 Aligned_cols=126 Identities=11% Similarity=0.074 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7787589999999999999994-039777999999999999999998660057531633596899999999999864306
Q 003707 665 SVSEMLVGALDYLQGKMSIIEG-SLNAMDFIMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCL 743 (801)
Q Consensus 665 ~~S~el~~~L~~L~~~L~~L~~-~L~~~~f~~i~r~ia~~i~~~L~~~Ii~~n~~Fs~~Ga~Ql~~D~~~L~~~f~~~~~ 743 (801)
.+++....-+..|...+..|+. .+++.....++.++..=|+..+|+.++++..-+|..-|.|+.+-+..|-.-...+.+
T Consensus 183 ~~~~s~~~Il~~L~~~~~~L~~~~V~p~li~QlfsQLF~fIna~lFN~LLlRr~~cs~s~G~qIr~NLs~LEeW~~~~l~ 262 (386)
T 3mmi_A 183 SGDEKFAKLFTFLNEFDAVLCKFQVVDSMHTKIFNDTLKYLNVMLFNDLITKCPALNWKYGYEVDRNIERLVSWFEPRIE 262 (386)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 97567999999999999999985999999999999999998599999987567666752489999649999999983667
Q ss_pred CCCCCHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 98986451899987027891789875414686888409883699999999973
Q 003707 744 RPEGFFPKTSEGLKLLKMREEQLQGGVLGGEKWMKQSGITHLSVAEAEKIEKN 796 (801)
Q Consensus 744 rpe~~f~~l~Ea~~LL~l~~~~l~~~l~~~~~~L~elgI~~Ls~~ea~~iL~r 796 (801)
....++..+.++..||-++..++.+. .. +.+. -..|++.|+.++|..
T Consensus 263 ~a~~~L~~L~QA~~LLQ~~K~t~~Di----~~-i~~~-C~~Lsp~QL~kIL~~ 309 (386)
T 3mmi_A 263 DVRPNLIQIIQAVKILQLKISNLNEF----KL-LFDF-WYALNPAQIQAILLK 309 (386)
T ss_dssp CCGGGGHHHHHHHHHHHCCCCCHHHH----HH-HHTT-CCSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHH----HH-HHHH-CCCCCHHHHHHHHHH
T ss_conf 79999999999999974378878789----99-9986-643899999999983
No 7
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=29.03 Aligned_cols=123 Identities=14% Similarity=0.141 Sum_probs=94.4
Q ss_pred CHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 87589999999999999994-03977799999999999999999866005753163359689999999999986430698
Q 003707 667 SEMLVGALDYLQGKMSIIEG-SLNAMDFIMVWRSLATGVDRLLFRGILMSNAKFYDGGVVRFGCDMEVLFGVFRAWCLRP 745 (801)
Q Consensus 667 S~el~~~L~~L~~~L~~L~~-~L~~~~f~~i~r~ia~~i~~~L~~~Ii~~n~~Fs~~Ga~Ql~~D~~~L~~~f~~~~~rp 745 (801)
++.....+..|...+..|+. .+++.....++.++..=|+..+|+.++++..-+|..-|.|+.+-+..|-.-...... +
T Consensus 201 ~~~~~~Il~~L~~~~~~L~~~~V~~~l~~Q~fsQlf~~In~~lFN~LL~r~~~cs~s~G~qIr~nls~Le~W~~~~~l-~ 279 (419)
T 2f6h_X 201 EYTMDDILTFFNSIYWCMKSFHIENEVFHAVVTTLLNYVDAICFNELIMKRNFLSWKRGLQLNYNVTRLEEWCKTHGL-T 279 (419)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTC-T
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-H
T ss_conf 458999999999999999985999999999999999998899999996467545525479899449999999987698-1
Q ss_pred C--CCHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9--86451899987027891789875414686888409883699999999973
Q 003707 746 E--GFFPKTSEGLKLLKMREEQLQGGVLGGEKWMKQSGITHLSVAEAEKIEKN 796 (801)
Q Consensus 746 e--~~f~~l~Ea~~LL~l~~~~l~~~l~~~~~~L~elgI~~Ls~~ea~~iL~r 796 (801)
+ .++..+.+++.+|-++.....+. ....+.+ ..|++.|+.+||..
T Consensus 280 ~a~~~L~~l~Qa~~lLq~~k~~~~d~----~~i~~~C--~~Ln~~Ql~~il~~ 326 (419)
T 2f6h_X 280 DGTECLQHLIQTAKLLQVRKYTIEDI----DILRGIC--YSLTPAQLQKLISQ 326 (419)
T ss_dssp THHHHTHHHHHHHHHTTSCCSSHHHH----HHHHHHT--TTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHH----HHHHHHH--HCCCHHHHHHHHHH
T ss_conf 69999999999999986378743119----9999870--00789999999981
No 8
>1vf5_B Subunit IV; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.32.1.1 PDB: 2d2c_B* 2e74_B* 2e75_B* 2e76_B* 2zt9_B* 1q90_D*
Probab=1.00 E-value=1 Score=22.40 Aligned_cols=16 Identities=31% Similarity=0.577 Sum_probs=13.9
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 8300589999999850
Q 003707 319 KPEFIFTLVYKITRDY 334 (801)
Q Consensus 319 KPEw~f~~vl~~i~~~ 334 (801)
||||||-+++.++|.-
T Consensus 76 ~PEWYFLf~YaILRsi 91 (160)
T 1vf5_B 76 LPEWYLYPVFQILRSL 91 (160)
T ss_dssp CCTTTTHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 8851246888999956
No 9
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=1.00 E-value=1 Score=21.86 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 69988787589899999999989978999999999988876654445454236768988755221016999888752134
Q 003707 25 LTNKEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVYASFTDRVSGLFTHVNVKLTDLASASRSPSSVSDGGVRA 104 (801)
Q Consensus 25 ~~s~~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 104 (801)
+++..||-.+|+.+.+++.|+.+|-.||..++...+ .....+ .++.+..-
T Consensus 5 l~~i~DLl~id~~I~~i~~eRd~La~~lq~~~~~~~-----~~~~~~-------------------------~~~~~~d~ 54 (355)
T 3etv_A 5 MNGIDDLLNINDRIKQVQNERNELASKLQNLKQSLA-----SNDTGG-------------------------GSGGGSDS 54 (355)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CCCCCC-------------------------CCCCHHHH
T ss_conf 010778862589999999999999999998763453-----344468-------------------------99614469
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 545533007999999999999999999999856754--167877532010001478899778999999999999998767
Q 003707 105 KQILGEELPALAKEVARVDMVRAYAETALKLDSLVG--DIEDAVSSAMNNNRRSNSTQDSEDMRLLAIKALKQAEDILTS 182 (801)
Q Consensus 105 ~~~l~~~l~~l~~~l~~le~~~~Y~~~~~~~e~l~~--d~e~~~~s~~~~~~~~~~~~~~~~~al~a~~~l~~~~~~~~~ 182 (801)
+.++.+...+.++|+.+...+.--.++...-+=-. ++| -.|-.|+.++.-+..
T Consensus 55 -e~llkre~~Lt~EL~~l~~LK~Vs~Li~EfktN~ellElE------------------------NCyYSLqnLrKKl~~ 109 (355)
T 3etv_A 55 -SDLLQREAILANELNILDNLKTFLNLIKEVKTNLNILELE------------------------NCYYSLQSLRKKMRN 109 (355)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH------------------------HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHC
T ss_conf -9999988899999998876778999999997528999999------------------------999999999998745
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 5202500467999998899999999669999999999995599998
Q 003707 183 VTKTRPQWARLVAAVDHRVDRALAMLRPQAIADHRALLSSLGWPPP 228 (801)
Q Consensus 183 ~~~~~~~~~~Lv~~v~~~v~~~~~~Lr~~~~~~l~~~L~~l~WP~~ 228 (801)
....-.+--|.-..|...|| .|.-++...+-.++...=|-..
T Consensus 110 n~~~~kqs~~FQqSvatYVD----sLHl~Lv~kl~~ilt~~FW~I~ 151 (355)
T 3etv_A 110 NAAYLKQSFNFQQSISTYVD----TLHLELVSTLYKILTNGFWKIT 151 (355)
T ss_dssp CHHHHTSCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTEEEC
T ss_pred CHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHEEEC
T ss_conf 06777325035656999998----8899999999999862105323
No 10
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=1.00 E-value=1 Score=18.77 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=11.5
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 8300589999999850
Q 003707 319 KPEFIFTLVYKITRDY 334 (801)
Q Consensus 319 KPEw~f~~vl~~i~~~ 334 (801)
||||||-+++.++|.-
T Consensus 270 ~PeWYFLf~YaiLRsi 285 (385)
T 3cx5_C 270 VPEWYLLPFYAILRSI 285 (385)
T ss_dssp CCCGGGHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 9862778999999954
Done!