Query 003707
Match_columns 801
No_of_seqs 162 out of 208
Neff 6.9
Searched_HMMs 13730
Date Tue Mar 26 18:39:50 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003707.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1755-1759//hhsearch_scop/003707hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90d_ f.32.1.1 (D:) Subunit 67.3 1.2 8.7E-05 18.9 1.8 17 318-334 72-88 (156)
2 d1ppjc1 f.32.1.1 (C:261-379) M 66.0 1.3 9.6E-05 18.7 1.8 16 319-334 9-24 (119)
3 d3cx5c1 f.32.1.1 (C:262-385) M 64.8 1.4 0.0001 18.4 1.8 17 319-335 9-25 (124)
4 d2rnrb1 b.55.1.9 (B:1-108) TFI 7.5 42 0.003 9.2 1.9 31 308-350 74-104 (108)
5 d2piha1 a.281.1.1 (A:2-124) Un 6.3 52 0.0038 8.6 10.3 76 70-151 38-113 (123)
6 d2oeea1 a.281.1.2 (A:3-112) Hy 6.2 54 0.0039 8.6 8.4 70 70-146 33-102 (110)
7 d1wa8b1 a.25.3.1 (B:602-695) E 5.3 66 0.0048 8.0 8.7 39 28-66 4-42 (94)
8 d1n5ua3 a.126.1.1 (A:389-584) 4.9 72 0.0053 7.7 2.0 42 297-340 128-169 (196)
9 d1n5ua2 a.126.1.1 (A:197-388) 4.8 74 0.0054 7.7 2.0 45 294-340 119-163 (192)
10 d2iaza1 a.281.1.2 (A:1-111) Hy 4.6 77 0.0056 7.6 9.6 70 70-146 34-103 (111)
No 1
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=67.27 E-value=1.2 Score=18.90 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.1
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 68300589999999850
Q 003707 318 DKPEFIFTLVYKITRDY 334 (801)
Q Consensus 318 dKPEw~f~~vl~~i~~~ 334 (801)
-||||||-+++.++|..
T Consensus 72 I~PEWYFL~~yaiLR~i 88 (156)
T d1q90d_ 72 ILPEWYFYPVFQILRVV 88 (156)
T ss_dssp CCCCGGGHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHC
T ss_conf 89611428999999807
No 2
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=66.03 E-value=1.3 Score=18.66 Aligned_cols=16 Identities=44% Similarity=0.827 Sum_probs=13.9
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 8300589999999850
Q 003707 319 KPEFIFTLVYKITRDY 334 (801)
Q Consensus 319 KPEw~f~~vl~~i~~~ 334 (801)
+|||||...+.++|.-
T Consensus 9 ~PEWYFL~~YaiLRsi 24 (119)
T d1ppjc1 9 KPEWYFLFAYAILRSI 24 (119)
T ss_dssp CCCGGGHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHCC
T ss_conf 9645878899999647
No 3
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=64.77 E-value=1.4 Score=18.41 Aligned_cols=17 Identities=29% Similarity=0.465 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 83005899999998508
Q 003707 319 KPEFIFTLVYKITRDYV 335 (801)
Q Consensus 319 KPEw~f~~vl~~i~~~~ 335 (801)
+|||||-..+.++|.--
T Consensus 9 ~PEWYFl~~YaiLRsiP 25 (124)
T d3cx5c1 9 VPEWYLLPFYAILRSIP 25 (124)
T ss_dssp CCCGGGHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHCCC
T ss_conf 95548788999995377
No 4
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.51 E-value=42 Score=9.24 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=22.9
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 4441233324683005899999998508848963099998402
Q 003707 308 ASQHHFSKWTDKPEFIFTLVYKITRDYVDSMDELLQPLVDEAL 350 (801)
Q Consensus 308 RF~YHF~NrldKPEw~f~~vl~~i~~~~~fl~~~lqp~l~~~~ 350 (801)
-+.|||.|+. -.+..++.+.+.||.++.+++
T Consensus 74 s~~F~Ftn~~------------~~~~~Rd~iK~~Lq~~i~~~k 104 (108)
T d2rnrb1 74 TTNFHFSNES------------TAVKERDAVKDLLQQLLPKFK 104 (108)
T ss_dssp EEEEEECCTT------------THHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEECCHH------------HHHHHHHHHHHHHHHHHHHHH
T ss_conf 3799977867------------778889999999999999855
No 5
>d2piha1 a.281.1.1 (A:2-124) Uncharacterized protein YmcA {Bacillus subtilis [TaxId: 1423]}
Probab=6.32 E-value=52 Score=8.63 Aligned_cols=76 Identities=12% Similarity=0.309 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45454236768988755221016999888752134545533007999999999999999999999856754167877532
Q 003707 70 TDRVSGLFTHVNVKLTDLASASRSPSSVSDGGVRAKQILGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAVSSA 149 (801)
Q Consensus 70 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~le~~~~Y~~~~~~~e~l~~d~e~~~~s~ 149 (801)
...+...+.+++..+..+...-. .+ .....+...+++..+.+++.....++.|++.=.+++.|..+|-..++..
T Consensus 38 d~ea~~li~~f~~~q~~~q~~q~----~g--~~~~~~e~~~el~~l~~~l~~np~v~~y~~Ae~~l~~lL~~V~~~I~~~ 111 (123)
T d2piha1 38 NDKVSTIVNQIKALQKQAVNLKH----YE--KHEALKQVEAKIDALQEELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQ 111 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH----TT--CHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH----HC--CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999998----38--9787699999999999998669899999999999999999999999876
Q ss_pred CC
Q ss_conf 01
Q 003707 150 MN 151 (801)
Q Consensus 150 ~~ 151 (801)
++
T Consensus 112 Is 113 (123)
T d2piha1 112 VT 113 (123)
T ss_dssp HH
T ss_pred HH
T ss_conf 43
No 6
>d2oeea1 a.281.1.2 (A:3-112) Hypothetical protein YheA {Bacillus subtilis [TaxId: 1423]}
Probab=6.20 E-value=54 Score=8.56 Aligned_cols=70 Identities=10% Similarity=0.167 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45454236768988755221016999888752134545533007999999999999999999999856754167877
Q 003707 70 TDRVSGLFTHVNVKLTDLASASRSPSSVSDGGVRAKQILGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAV 146 (801)
Q Consensus 70 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~le~~~~Y~~~~~~~e~l~~d~e~~~ 146 (801)
...+...+.+++..+..+...-. . +.. ......+++..+.+++.....++.|++.=.+++.+..++...+
T Consensus 33 d~~a~~li~~f~~~q~~~q~~q~-~---G~~---~~~e~~~~l~~~~~~l~~n~~v~~~~~Ae~~l~~ll~~V~~~I 102 (110)
T d2oeea1 33 DESAKRMFENFRDVQLRLQQKQM-A---GEE---ITQEEVTQAQKTVALVQQHEKISQLMEAEQRMSMLIGELNKII 102 (110)
T ss_dssp SHHHHHHHHHHHHHCC-------------------------CHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-C---CCC---CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999987-4---999---9699999999999998668899999999999999999999999
No 7
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.26 E-value=66 Score=7.99 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 887875898999999999899789999999999888766
Q 003707 28 KEYHARAARLASELETQCSHLDQSLVELNRNLESKLSVY 66 (801)
Q Consensus 28 ~~dl~~~~~l~~~l~~~~~~l~~ql~~~~~~l~~~~~~~ 66 (801)
..|+..++....++......++..|.+++..+.....+|
T Consensus 4 ~~d~~~l~~~a~~i~~~~~~i~~~l~~L~~~~~~l~~~W 42 (94)
T d1wa8b1 4 QWNFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAW 42 (94)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 225999999999999999999999999999999999773
No 8
>d1n5ua3 a.126.1.1 (A:389-584) Serum albumin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.90 E-value=72 Score=7.75 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 39994856987444123332468300589999999850884896
Q 003707 297 AIEELVNPIAVASQHHFSKWTDKPEFIFTLVYKITRDYVDSMDE 340 (801)
Q Consensus 297 ~ie~Lv~Pl~~RF~YHF~NrldKPEw~f~~vl~~i~~~~~fl~~ 340 (801)
..+.=-..+..||-|.+..| +|+.+-.+++.++..|...+..
T Consensus 128 ~~~e~~~~~~~~fl~e~~rr--hP~~~~~~ll~~a~~y~~~~~~ 169 (196)
T d1n5ua3 128 LSEKERQIKKQTALVELVKH--KPKATKEQLKAVMDDFAAFVEK 169 (196)
T ss_dssp SCHHHHHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHH
T ss_conf 40550899999999999972--8878899999999999999998
No 9
>d1n5ua2 a.126.1.1 (A:197-388) Serum albumin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.78 E-value=74 Score=7.67 Aligned_cols=45 Identities=9% Similarity=0.248 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 51339994856987444123332468300589999999850884896
Q 003707 294 PLWAIEELVNPIAVASQHHFSKWTDKPEFIFTLVYKITRDYVDSMDE 340 (801)
Q Consensus 294 ~Lw~ie~Lv~Pl~~RF~YHF~NrldKPEw~f~~vl~~i~~~~~fl~~ 340 (801)
..-..+.=-.-+..||-|.|..| +|+.+-.+++.++..|...+..
T Consensus 119 ~C~~~~~~~~~~~~~flye~srr--hP~~~~~~ll~~~~~y~~~l~~ 163 (192)
T d1n5ua2 119 VCKNYAEAKDVFLGMFLYEYARR--HPDYSVVLLLRLAKTYETTLEK 163 (192)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHT--CTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHH
T ss_conf 88551650999998999998861--8888899999999999999998
No 10
>d2iaza1 a.281.1.2 (A:1-111) Hypothetical protein SP1372 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=4.65 E-value=77 Score=7.57 Aligned_cols=70 Identities=13% Similarity=0.203 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45454236768988755221016999888752134545533007999999999999999999999856754167877
Q 003707 70 TDRVSGLFTHVNVKLTDLASASRSPSSVSDGGVRAKQILGEELPALAKEVARVDMVRAYAETALKLDSLVGDIEDAV 146 (801)
Q Consensus 70 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~le~~~~Y~~~~~~~e~l~~d~e~~~ 146 (801)
...+...+.+++..+..+...-. . +.... ....+++..+.+++..-+.++.|++.=..++.+..+|...+
T Consensus 34 D~ea~~l~~~f~~~q~~lq~~q~-~---G~~~~---~e~~~~l~~l~~~i~~n~~i~~~~~Ae~~l~~ll~~Vn~iI 103 (111)
T d2iaza1 34 DAEASKIFTDYLAFQEEIQKLAQ-T---GQMPD---ASFQAKMEGFGKQIQGNSLLSEFFTKQQQLAIYLSDIEKIV 103 (111)
T ss_dssp CHHHHHHHHHHHHHGGGTTTTCC--------CC---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-C---CCCCC---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999987-5---99997---99999999999998668999999999999999999999999
Done!