BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003710
(801 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From
Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis
State
pdb|4ANI|C Chain C, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|D Chain D, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|G Chain G, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|H Chain H, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
Length = 509
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 18/143 (12%)
Query: 313 VNAHFLE-SFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLE------GKSIH----- 360
++AH +E + +R+ L+D L P I + L+ T++ A+ E GK H
Sbjct: 277 LSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNP 336
Query: 361 ------GYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYV 414
G AI+ G + + L+D+ S ++ +F +IE+N + +
Sbjct: 337 DEVVAIGAAIQGGVIAGEVKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFT 396
Query: 415 RNGQNREAMELFQDLWSEPLKPD 437
N+ +++ P+ D
Sbjct: 397 TAADNQTTVDIHVLQGERPMAAD 419
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 426 FQDLWSEPLKPDAMTFAS-ILPAYAEIATLSDSMQIHSLI 464
F+DL S+ L P TFA L YA +A+L+D M I SL+
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLV 1783
>pdb|2EUA|A Chain A, Structure And Mechanism Of Menf, The Menaquinone-Specific
Isochorismate Synthase From Escherichia Coli
pdb|2EUA|B Chain B, Structure And Mechanism Of Menf, The Menaquinone-Specific
Isochorismate Synthase From Escherichia Coli
pdb|3BZM|A Chain A, Crystal Structure Of Open Form Of Menaquinone-Specific
Isochorismate Synthase, Menf
pdb|3BZN|A Chain A, Crystal Structure Of Open Form Of Menaquinone-Specific
Isochorismate Synthase, Menf
Length = 431
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 567 EHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWG 602
+ ++ + R +LDQA+RF+ + P RIWG
Sbjct: 61 DEEAVVLGAITRFTSLDQAQRFLRQHPEHADLRIWG 96
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 386 GALKMTEKLFGSMIEKN----LVSWNAMIAAYVRNGQNREAME--LFQDLWSEPLKPDAM 439
G LK TEK+F + E + S +++A ME F+DL S+ L P
Sbjct: 1744 GKLK-TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1802
Query: 440 TFAS-ILPAYAEIATLSDSMQIHSLI 464
TFA L YA +A+L+D M I SL+
Sbjct: 1803 TFAGHSLGEYAALASLADVMSIESLV 1828
>pdb|3CJX|A Chain A, Crystal Structure Of A Protein Of Unknown Function With A
Cupin-Like Fold (Reut_b4571) From Ralstonia Eutropha
Jmp134 At 2.60 A Resolution
pdb|3CJX|B Chain B, Crystal Structure Of A Protein Of Unknown Function With A
Cupin-Like Fold (Reut_b4571) From Ralstonia Eutropha
Jmp134 At 2.60 A Resolution
pdb|3CJX|C Chain C, Crystal Structure Of A Protein Of Unknown Function With A
Cupin-Like Fold (Reut_b4571) From Ralstonia Eutropha
Jmp134 At 2.60 A Resolution
pdb|3CJX|D Chain D, Crystal Structure Of A Protein Of Unknown Function With A
Cupin-Like Fold (Reut_b4571) From Ralstonia Eutropha
Jmp134 At 2.60 A Resolution
pdb|3CJX|E Chain E, Crystal Structure Of A Protein Of Unknown Function With A
Cupin-Like Fold (Reut_b4571) From Ralstonia Eutropha
Jmp134 At 2.60 A Resolution
pdb|3CJX|F Chain F, Crystal Structure Of A Protein Of Unknown Function With A
Cupin-Like Fold (Reut_b4571) From Ralstonia Eutropha
Jmp134 At 2.60 A Resolution
pdb|3CJX|G Chain G, Crystal Structure Of A Protein Of Unknown Function With A
Cupin-Like Fold (Reut_b4571) From Ralstonia Eutropha
Jmp134 At 2.60 A Resolution
pdb|3CJX|H Chain H, Crystal Structure Of A Protein Of Unknown Function With A
Cupin-Like Fold (Reut_b4571) From Ralstonia Eutropha
Jmp134 At 2.60 A Resolution
Length = 165
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 659 EKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIY 695
E G K+T GC ++E G H+F + +T +I+
Sbjct: 78 EYPGQKQTAGCYLYEPGGSIHQFNTPRDNEGQTEVIF 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,681,493
Number of Sequences: 62578
Number of extensions: 962859
Number of successful extensions: 1804
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1800
Number of HSP's gapped (non-prelim): 11
length of query: 801
length of database: 14,973,337
effective HSP length: 107
effective length of query: 694
effective length of database: 8,277,491
effective search space: 5744578754
effective search space used: 5744578754
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)