Query 003710
Match_columns 801
No_of_seqs 853 out of 4954
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 04:32:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2E-148 4E-153 1317.2 81.1 730 67-799 119-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 7E-129 1E-133 1123.2 69.3 613 96-801 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.2E-84 2.5E-89 772.1 65.6 678 96-797 48-747 (857)
4 PLN03218 maturation of RBCL 1; 100.0 4.7E-70 1E-74 632.8 55.7 516 68-594 370-908 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 4.3E-66 9.3E-71 599.8 63.0 512 130-667 366-915 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 5.4E-62 1.2E-66 564.7 48.9 479 197-718 84-567 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.7E-31 8E-36 321.4 66.6 572 77-662 270-867 (899)
8 PF14432 DYW_deaminase: DYW fa 100.0 4.1E-37 8.8E-42 261.9 6.8 106 668-791 2-116 (116)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-30 3.4E-35 315.9 66.8 576 73-661 198-832 (899)
10 PRK11447 cellulose synthase su 99.9 2.8E-22 6.1E-27 244.4 62.1 583 62-664 55-744 (1157)
11 PRK11447 cellulose synthase su 99.9 6E-22 1.3E-26 241.5 59.3 577 73-662 33-701 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 1.8E-18 3.9E-23 201.4 58.6 206 79-298 55-275 (987)
13 PRK09782 bacteriophage N4 rece 99.9 4.2E-17 9.1E-22 190.1 56.0 576 63-663 72-742 (987)
14 KOG4626 O-linked N-acetylgluco 99.8 6.9E-18 1.5E-22 173.8 34.4 371 270-652 116-510 (966)
15 KOG4626 O-linked N-acetylgluco 99.8 1.4E-17 3E-22 171.6 27.8 370 278-660 90-484 (966)
16 PRK11788 tetratricopeptide rep 99.8 5.2E-17 1.1E-21 176.7 32.7 165 498-668 183-354 (389)
17 KOG4422 Uncharacterized conser 99.8 1.3E-14 2.8E-19 143.8 40.3 406 99-592 116-548 (625)
18 PRK11788 tetratricopeptide rep 99.8 1.2E-16 2.6E-21 173.8 29.2 299 106-439 42-354 (389)
19 TIGR00990 3a0801s09 mitochondr 99.8 1.8E-15 3.9E-20 173.6 40.2 414 203-661 130-571 (615)
20 PRK10049 pgaA outer membrane p 99.8 6.3E-15 1.4E-19 172.2 42.6 385 247-662 27-457 (765)
21 KOG2002 TPR-containing nuclear 99.7 3E-13 6.6E-18 147.6 47.4 565 84-664 146-801 (1018)
22 PRK15174 Vi polysaccharide exp 99.7 1.2E-14 2.6E-19 166.2 38.5 345 275-660 47-402 (656)
23 PRK15174 Vi polysaccharide exp 99.7 3.3E-14 7.2E-19 162.6 39.7 306 280-630 86-406 (656)
24 KOG2002 TPR-containing nuclear 99.7 7.6E-13 1.6E-17 144.6 47.6 528 114-662 145-746 (1018)
25 PRK14574 hmsH outer membrane p 99.7 3E-13 6.5E-18 154.9 47.0 178 177-362 42-228 (822)
26 TIGR00990 3a0801s09 mitochondr 99.7 4.2E-13 9.1E-18 154.1 44.9 273 350-660 307-596 (615)
27 PRK10049 pgaA outer membrane p 99.7 1.2E-13 2.6E-18 161.4 38.8 408 168-635 14-464 (765)
28 PRK14574 hmsH outer membrane p 99.7 1.1E-12 2.4E-17 150.2 43.6 445 144-635 44-521 (822)
29 KOG4422 Uncharacterized conser 99.7 5.2E-13 1.1E-17 132.6 32.4 344 98-470 206-593 (625)
30 KOG2076 RNA polymerase III tra 99.5 5.9E-10 1.3E-14 121.7 44.6 551 78-643 149-785 (895)
31 KOG2003 TPR repeat-containing 99.5 1.2E-11 2.6E-16 123.5 29.0 475 104-648 206-710 (840)
32 KOG0495 HAT repeat protein [RN 99.5 6E-09 1.3E-13 109.5 49.4 492 142-673 384-890 (913)
33 KOG4318 Bicoid mRNA stability 99.5 2.1E-10 4.5E-15 124.3 38.1 530 120-671 11-603 (1088)
34 KOG4318 Bicoid mRNA stability 99.5 1E-10 2.2E-15 126.6 34.9 209 59-285 16-286 (1088)
35 KOG2076 RNA polymerase III tra 99.5 5.9E-09 1.3E-13 114.0 48.3 583 66-657 170-891 (895)
36 PF13429 TPR_15: Tetratricopep 99.4 5.4E-13 1.2E-17 137.4 10.6 254 377-659 13-275 (280)
37 KOG0495 HAT repeat protein [RN 99.4 8.8E-08 1.9E-12 101.0 48.1 405 246-663 387-848 (913)
38 KOG0547 Translocase of outer m 99.4 3.2E-10 7E-15 115.1 29.4 404 206-660 121-565 (606)
39 KOG1155 Anaphase-promoting com 99.4 2.4E-09 5.2E-14 108.3 33.2 354 265-659 159-534 (559)
40 KOG1126 DNA-binding cell divis 99.4 1.7E-10 3.8E-15 122.0 23.7 198 402-663 420-622 (638)
41 KOG1915 Cell cycle control pro 99.3 2.5E-07 5.4E-12 94.1 41.5 501 98-660 72-624 (677)
42 TIGR00540 hemY_coli hemY prote 99.3 4.4E-09 9.5E-14 114.2 30.1 289 313-625 96-397 (409)
43 KOG2003 TPR repeat-containing 99.3 3.8E-09 8.2E-14 106.0 26.3 408 246-661 212-689 (840)
44 KOG1126 DNA-binding cell divis 99.3 1.9E-10 4.2E-15 121.7 18.1 161 494-661 420-586 (638)
45 KOG1915 Cell cycle control pro 99.3 4.1E-07 9E-12 92.5 40.8 383 247-660 153-584 (677)
46 PRK10747 putative protoheme IX 99.3 6.2E-09 1.4E-13 112.4 30.0 86 348-435 129-219 (398)
47 PF13041 PPR_2: PPR repeat fam 99.2 1.1E-11 2.4E-16 89.4 5.6 50 198-247 1-50 (50)
48 KOG1173 Anaphase-promoting com 99.2 1.5E-08 3.2E-13 105.4 29.2 266 367-660 239-517 (611)
49 PRK10747 putative protoheme IX 99.2 3.6E-09 7.8E-14 114.2 26.3 251 383-657 129-386 (398)
50 PF13041 PPR_2: PPR repeat fam 99.2 2.7E-11 5.8E-16 87.4 5.8 50 401-450 1-50 (50)
51 KOG2047 mRNA splicing factor [ 99.2 3.1E-06 6.6E-11 89.6 44.9 302 73-398 107-451 (835)
52 PF13429 TPR_15: Tetratricopep 99.2 1.4E-10 3E-15 119.6 13.0 253 106-363 15-274 (280)
53 KOG1155 Anaphase-promoting com 99.2 2.6E-07 5.6E-12 94.0 35.4 350 244-630 173-539 (559)
54 TIGR00540 hemY_coli hemY prote 99.2 1.1E-08 2.3E-13 111.2 27.8 296 101-430 84-397 (409)
55 COG2956 Predicted N-acetylgluc 99.2 7.6E-08 1.6E-12 93.4 28.3 298 314-671 48-357 (389)
56 KOG2047 mRNA splicing factor [ 99.1 1.4E-05 3E-10 84.8 46.1 524 85-660 92-686 (835)
57 TIGR02521 type_IV_pilW type IV 99.1 1E-08 2.2E-13 102.4 20.9 199 438-660 31-231 (234)
58 KOG1174 Anaphase-promoting com 99.1 1E-06 2.2E-11 88.3 32.2 137 494-634 367-507 (564)
59 COG3071 HemY Uncharacterized e 99.1 3.9E-07 8.5E-12 91.4 29.3 281 314-625 97-388 (400)
60 KOG3785 Uncharacterized conser 99.0 7E-07 1.5E-11 87.5 29.8 216 389-630 271-493 (557)
61 KOG4162 Predicted calmodulin-b 99.0 9.3E-07 2E-11 95.6 33.5 391 263-661 316-783 (799)
62 KOG0985 Vesicle coat protein c 99.0 2.8E-05 6.1E-10 86.2 43.2 542 74-657 487-1245(1666)
63 COG3071 HemY Uncharacterized e 99.0 3E-07 6.5E-12 92.2 25.4 211 448-662 128-358 (400)
64 COG2956 Predicted N-acetylgluc 99.0 7.3E-07 1.6E-11 86.7 26.4 287 213-526 48-349 (389)
65 KOG4162 Predicted calmodulin-b 99.0 1.5E-05 3.2E-10 86.6 38.2 477 111-633 239-789 (799)
66 COG3063 PilF Tfp pilus assembl 98.9 7.4E-08 1.6E-12 89.4 18.0 162 497-663 37-204 (250)
67 KOG1840 Kinesin light chain [C 98.9 2.9E-07 6.3E-12 99.1 25.4 239 405-660 201-478 (508)
68 KOG2376 Signal recognition par 98.9 9.5E-06 2.1E-10 85.4 35.2 435 207-670 19-524 (652)
69 KOG1173 Anaphase-promoting com 98.9 1.2E-06 2.6E-11 91.5 28.4 268 310-607 253-531 (611)
70 KOG1156 N-terminal acetyltrans 98.9 2.8E-05 6E-10 82.9 38.1 459 147-659 20-509 (700)
71 TIGR02521 type_IV_pilW type IV 98.9 1.4E-07 3.1E-12 94.1 20.7 162 495-661 31-198 (234)
72 KOG0985 Vesicle coat protein c 98.9 0.00027 5.8E-09 78.8 46.1 564 75-662 367-1163(1666)
73 PRK12370 invasion protein regu 98.9 2.8E-07 6E-12 104.2 23.7 244 387-662 276-536 (553)
74 KOG3616 Selective LIM binding 98.9 5.3E-06 1.2E-10 88.6 30.9 420 145-655 501-931 (1636)
75 KOG2376 Signal recognition par 98.9 4E-05 8.7E-10 80.9 36.7 261 307-595 230-520 (652)
76 KOG3616 Selective LIM binding 98.8 0.00013 2.7E-09 78.5 39.8 287 73-397 620-933 (1636)
77 KOG3785 Uncharacterized conser 98.8 5.6E-05 1.2E-09 74.5 34.0 204 377-608 290-504 (557)
78 PRK11189 lipoprotein NlpI; Pro 98.8 4.9E-07 1.1E-11 93.4 21.2 217 417-663 40-267 (296)
79 KOG0547 Translocase of outer m 98.8 5E-06 1.1E-10 85.4 27.1 153 505-661 336-491 (606)
80 KOG1129 TPR repeat-containing 98.8 2.6E-07 5.6E-12 89.6 16.9 233 373-662 224-459 (478)
81 PRK12370 invasion protein regu 98.8 5.2E-07 1.1E-11 102.0 22.2 213 417-661 275-502 (553)
82 KOG1840 Kinesin light chain [C 98.7 3E-06 6.4E-11 91.4 23.7 230 236-465 200-477 (508)
83 KOG3617 WD40 and TPR repeat-co 98.7 0.00038 8.3E-09 76.0 38.7 367 76-493 736-1191(1416)
84 PRK04841 transcriptional regul 98.7 0.0023 5E-08 78.0 49.6 442 186-662 265-761 (903)
85 KOG1127 TPR repeat-containing 98.6 0.00027 5.9E-09 79.0 34.9 160 496-658 968-1135(1238)
86 KOG1129 TPR repeat-containing 98.6 3.4E-06 7.4E-11 82.0 18.1 220 104-327 228-455 (478)
87 PRK11189 lipoprotein NlpI; Pro 98.6 2.3E-05 5E-10 81.0 25.9 200 404-633 65-271 (296)
88 PF12569 NARP1: NMDA receptor- 98.6 4.8E-05 1E-09 83.3 28.6 284 346-660 13-333 (517)
89 KOG3617 WD40 and TPR repeat-co 98.6 4.8E-05 1E-09 82.7 27.2 396 167-615 724-1188(1416)
90 KOG0548 Molecular co-chaperone 98.6 2.9E-05 6.4E-10 81.1 24.5 224 408-662 229-456 (539)
91 PF12569 NARP1: NMDA receptor- 98.5 0.00034 7.5E-09 76.7 33.7 262 375-656 197-515 (517)
92 KOG1127 TPR repeat-containing 98.5 0.00018 3.8E-09 80.4 31.1 552 84-660 474-1103(1238)
93 KOG1174 Anaphase-promoting com 98.5 0.00083 1.8E-08 68.0 33.0 156 381-565 343-503 (564)
94 KOG1156 N-terminal acetyltrans 98.5 0.0011 2.4E-08 71.1 35.3 427 212-675 19-487 (700)
95 KOG0624 dsRNA-activated protei 98.5 0.00014 3E-09 71.6 26.0 315 277-661 45-370 (504)
96 PF12854 PPR_1: PPR repeat 98.5 1E-07 2.2E-12 61.6 3.2 33 164-196 2-34 (34)
97 TIGR03302 OM_YfiO outer membra 98.5 2.1E-05 4.5E-10 78.8 21.6 166 494-661 32-232 (235)
98 PF04733 Coatomer_E: Coatomer 98.5 8.7E-06 1.9E-10 82.9 18.1 247 380-661 9-265 (290)
99 COG3063 PilF Tfp pilus assembl 98.5 3.2E-05 7E-10 72.2 20.0 200 406-633 38-242 (250)
100 PF12854 PPR_1: PPR repeat 98.4 4.7E-07 1E-11 58.5 4.5 32 561-592 2-33 (34)
101 PRK15359 type III secretion sy 98.4 8.4E-06 1.8E-10 74.0 13.6 122 515-643 13-137 (144)
102 KOG1125 TPR repeat-containing 98.4 8.6E-06 1.9E-10 85.7 14.9 226 382-660 295-526 (579)
103 KOG0548 Molecular co-chaperone 98.3 0.00036 7.7E-09 73.3 25.7 101 76-179 10-114 (539)
104 PF04733 Coatomer_E: Coatomer 98.3 5E-05 1.1E-09 77.4 18.5 251 347-633 11-271 (290)
105 cd05804 StaR_like StaR_like; a 98.3 0.0013 2.7E-08 70.5 30.0 93 374-466 116-214 (355)
106 cd05804 StaR_like StaR_like; a 98.3 0.0021 4.5E-08 68.9 31.6 163 301-466 6-176 (355)
107 PRK10370 formate-dependent nit 98.3 4.6E-05 1E-09 73.2 16.6 147 502-663 23-175 (198)
108 TIGR00756 PPR pentatricopeptid 98.1 3.4E-06 7.5E-11 55.4 4.3 35 496-530 1-35 (35)
109 KOG4340 Uncharacterized conser 98.1 0.00087 1.9E-08 64.9 21.9 203 385-593 125-337 (459)
110 PRK15359 type III secretion sy 98.1 2.5E-05 5.5E-10 70.8 11.3 99 562-662 22-122 (144)
111 KOG1070 rRNA processing protei 98.1 0.00016 3.6E-09 83.4 19.9 206 435-664 1454-1666(1710)
112 TIGR00756 PPR pentatricopeptid 98.1 3.8E-06 8.2E-11 55.2 4.2 35 201-235 1-35 (35)
113 KOG2053 Mitochondrial inherita 98.1 0.031 6.8E-07 62.7 38.0 70 212-284 55-124 (932)
114 PRK15179 Vi polysaccharide bio 98.1 0.00021 4.7E-09 81.3 20.6 138 494-636 85-226 (694)
115 KOG1128 Uncharacterized conser 98.1 0.00019 4.1E-09 77.9 18.7 221 367-628 393-617 (777)
116 PRK04841 transcriptional regul 98.1 0.0024 5.2E-08 77.9 31.2 259 210-468 462-761 (903)
117 KOG4340 Uncharacterized conser 98.1 0.0013 2.7E-08 63.8 22.0 308 73-400 15-338 (459)
118 PLN02789 farnesyltranstransfer 98.1 0.0016 3.6E-08 67.3 24.1 221 409-659 43-300 (320)
119 PRK15363 pathogenicity island 98.0 0.00012 2.6E-09 65.3 13.4 95 566-660 35-131 (157)
120 COG4783 Putative Zn-dependent 98.0 0.001 2.2E-08 69.3 21.6 116 540-658 316-434 (484)
121 COG4783 Putative Zn-dependent 98.0 0.00063 1.4E-08 70.9 18.9 138 503-662 314-455 (484)
122 COG5010 TadD Flp pilus assembl 98.0 0.00043 9.4E-09 66.4 16.4 136 526-663 62-199 (257)
123 TIGR02552 LcrH_SycD type III s 98.0 7.7E-05 1.7E-09 67.2 11.1 100 562-661 12-114 (135)
124 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00021 4.5E-09 75.3 15.5 123 532-659 171-295 (395)
125 KOG1914 mRNA cleavage and poly 98.0 0.04 8.7E-07 58.3 34.3 423 64-491 15-528 (656)
126 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.5E-10 52.4 4.0 34 200-233 1-34 (34)
127 PF13812 PPR_3: Pentatricopept 97.9 1.5E-05 3.2E-10 51.9 4.4 33 496-528 2-34 (34)
128 PRK10370 formate-dependent nit 97.9 0.00026 5.6E-09 68.0 14.7 125 508-636 52-182 (198)
129 PRK15179 Vi polysaccharide bio 97.9 0.0011 2.3E-08 75.7 21.3 130 527-659 83-215 (694)
130 KOG1128 Uncharacterized conser 97.9 0.00057 1.2E-08 74.3 17.8 88 267-362 395-482 (777)
131 KOG1070 rRNA processing protei 97.9 0.0019 4.2E-08 75.0 22.6 231 233-465 1455-1698(1710)
132 TIGR03302 OM_YfiO outer membra 97.9 0.00081 1.7E-08 67.2 18.0 180 371-558 32-231 (235)
133 COG5010 TadD Flp pilus assembl 97.8 0.00084 1.8E-08 64.4 16.0 117 536-654 106-224 (257)
134 KOG1125 TPR repeat-containing 97.8 0.0006 1.3E-08 72.3 16.3 240 349-618 297-562 (579)
135 KOG1914 mRNA cleavage and poly 97.8 0.073 1.6E-06 56.5 36.2 171 419-615 347-527 (656)
136 PF01535 PPR: PPR repeat; Int 97.7 3.5E-05 7.6E-10 48.8 3.5 31 201-231 1-31 (31)
137 PF01535 PPR: PPR repeat; Int 97.7 3.4E-05 7.3E-10 48.9 3.3 31 496-526 1-31 (31)
138 PRK14720 transcript cleavage f 97.7 0.0059 1.3E-07 70.6 22.6 221 402-650 30-273 (906)
139 PF09976 TPR_21: Tetratricopep 97.7 0.0011 2.4E-08 60.3 14.1 114 543-657 24-143 (145)
140 PLN02789 farnesyltranstransfer 97.7 0.0086 1.9E-07 62.0 21.4 198 417-660 34-249 (320)
141 TIGR02552 LcrH_SycD type III s 97.7 0.00088 1.9E-08 60.2 12.7 114 516-634 4-121 (135)
142 KOG0624 dsRNA-activated protei 97.6 0.094 2E-06 52.4 29.6 211 172-439 41-257 (504)
143 KOG3060 Uncharacterized conser 97.6 0.0043 9.4E-08 59.1 16.1 82 578-659 98-181 (289)
144 cd00189 TPR Tetratricopeptide 97.5 0.00065 1.4E-08 56.1 9.3 92 569-660 3-96 (100)
145 PRK14720 transcript cleavage f 97.5 0.028 6.1E-07 65.2 24.2 80 237-329 118-197 (906)
146 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0016 3.5E-08 68.7 13.2 120 103-227 173-295 (395)
147 PF09976 TPR_21: Tetratricopep 97.4 0.0057 1.2E-07 55.7 15.1 125 497-625 14-145 (145)
148 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.002 4.2E-08 56.3 11.7 98 536-633 8-111 (119)
149 KOG1538 Uncharacterized conser 97.4 0.036 7.8E-07 59.6 22.1 199 344-598 605-806 (1081)
150 KOG3060 Uncharacterized conser 97.4 0.036 7.8E-07 53.1 19.7 191 417-633 26-226 (289)
151 PF04840 Vps16_C: Vps16, C-ter 97.4 0.18 3.8E-06 52.2 26.7 103 374-492 179-281 (319)
152 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0022 4.8E-08 56.0 11.0 97 567-663 3-107 (119)
153 PF13414 TPR_11: TPR repeat; P 97.3 0.00048 1E-08 53.4 5.8 64 597-660 2-66 (69)
154 PF13432 TPR_16: Tetratricopep 97.3 0.00065 1.4E-08 51.9 6.4 59 604-662 3-61 (65)
155 PRK02603 photosystem I assembl 97.3 0.0045 9.7E-08 58.3 13.4 129 495-647 35-166 (172)
156 KOG3081 Vesicle coat complex C 97.3 0.051 1.1E-06 52.5 19.6 148 502-659 115-269 (299)
157 CHL00033 ycf3 photosystem I as 97.3 0.012 2.6E-07 55.1 15.6 110 495-632 35-154 (168)
158 PF12895 Apc3: Anaphase-promot 97.3 0.00021 4.6E-09 58.0 3.0 58 599-657 26-83 (84)
159 KOG3081 Vesicle coat complex C 97.2 0.044 9.6E-07 52.9 18.5 242 382-632 18-276 (299)
160 PF14938 SNAP: Soluble NSF att 97.2 0.16 3.4E-06 52.1 24.4 155 407-593 98-264 (282)
161 PLN03088 SGT1, suppressor of 97.2 0.0018 3.9E-08 68.6 10.2 103 537-642 9-114 (356)
162 COG4235 Cytochrome c biogenesi 97.2 0.0026 5.7E-08 62.8 10.0 105 563-667 152-262 (287)
163 PLN03088 SGT1, suppressor of 97.2 0.0043 9.2E-08 65.8 12.5 104 500-608 7-113 (356)
164 KOG0553 TPR repeat-containing 97.1 0.0047 1E-07 60.6 10.7 96 540-638 91-189 (304)
165 PF06239 ECSIT: Evolutionarily 97.0 0.012 2.7E-07 55.2 12.4 99 451-557 65-166 (228)
166 PF08579 RPM2: Mitochondrial r 97.0 0.0073 1.6E-07 50.1 9.6 87 407-542 29-116 (120)
167 PF05843 Suf: Suppressor of fo 97.0 0.018 3.9E-07 58.8 14.9 135 496-633 2-142 (280)
168 KOG1130 Predicted G-alpha GTPa 97.0 0.0031 6.8E-08 63.9 8.8 130 531-660 196-343 (639)
169 cd00189 TPR Tetratricopeptide 97.0 0.0065 1.4E-07 49.8 9.8 90 497-591 2-93 (100)
170 PRK10153 DNA-binding transcrip 97.0 0.017 3.7E-07 64.1 15.3 65 597-662 419-483 (517)
171 PF08579 RPM2: Mitochondrial r 97.0 0.0076 1.7E-07 50.0 9.3 79 204-282 29-116 (120)
172 PRK02603 photosystem I assembl 97.0 0.011 2.3E-07 55.7 11.9 82 566-647 35-121 (172)
173 PF14559 TPR_19: Tetratricopep 96.9 0.0012 2.6E-08 50.9 4.5 53 609-661 2-54 (68)
174 PF13371 TPR_9: Tetratricopept 96.9 0.0027 5.9E-08 49.8 6.6 59 605-663 2-60 (73)
175 KOG2053 Mitochondrial inherita 96.9 1.2 2.5E-05 50.8 44.1 161 496-659 437-606 (932)
176 PF13431 TPR_17: Tetratricopep 96.9 0.00087 1.9E-08 43.2 2.7 32 621-652 2-33 (34)
177 CHL00033 ycf3 photosystem I as 96.9 0.0082 1.8E-07 56.3 10.4 93 566-658 35-139 (168)
178 PRK10153 DNA-binding transcrip 96.9 0.027 5.8E-07 62.5 15.8 140 494-635 336-490 (517)
179 KOG0553 TPR repeat-containing 96.9 0.0036 7.9E-08 61.4 7.8 88 573-660 88-177 (304)
180 PF07079 DUF1347: Protein of u 96.8 0.8 1.7E-05 48.0 35.8 179 240-431 133-326 (549)
181 PF12895 Apc3: Anaphase-promot 96.8 0.0025 5.5E-08 51.6 5.7 80 508-591 2-83 (84)
182 PF10037 MRP-S27: Mitochondria 96.7 0.014 3.1E-07 61.9 11.9 108 369-476 63-176 (429)
183 PF12688 TPR_5: Tetratrico pep 96.7 0.041 8.9E-07 47.6 12.6 92 500-591 6-100 (120)
184 PRK15331 chaperone protein Sic 96.7 0.011 2.4E-07 53.3 9.3 88 573-660 44-133 (165)
185 PF13432 TPR_16: Tetratricopep 96.7 0.0028 6.1E-08 48.4 4.6 61 572-632 3-65 (65)
186 PF10037 MRP-S27: Mitochondria 96.6 0.014 3E-07 62.0 10.8 115 169-283 66-186 (429)
187 COG4700 Uncharacterized protei 96.6 0.6 1.3E-05 42.8 20.3 152 504-660 65-221 (251)
188 COG4700 Uncharacterized protei 96.5 0.052 1.1E-06 49.4 11.9 106 556-661 79-189 (251)
189 PRK10866 outer membrane biogen 96.5 0.21 4.6E-06 49.7 17.9 159 498-659 35-239 (243)
190 KOG2280 Vacuolar assembly/sort 96.5 1.9 4.2E-05 48.1 29.1 114 527-656 681-794 (829)
191 PF14559 TPR_19: Tetratricopep 96.5 0.0025 5.4E-08 49.1 3.3 57 542-601 3-61 (68)
192 PRK15363 pathogenicity island 96.4 0.11 2.3E-06 46.8 13.5 89 536-627 41-132 (157)
193 PF05843 Suf: Suppressor of fo 96.4 0.032 6.9E-07 57.0 11.5 129 531-661 2-136 (280)
194 PF06239 ECSIT: Evolutionarily 96.3 0.023 4.9E-07 53.5 8.9 90 95-184 43-153 (228)
195 PF04840 Vps16_C: Vps16, C-ter 96.3 1.7 3.6E-05 45.1 30.8 110 532-658 179-288 (319)
196 KOG2041 WD40 repeat protein [G 96.3 2.4 5.2E-05 46.8 30.0 278 284-605 748-1064(1189)
197 PF14938 SNAP: Soluble NSF att 96.3 0.33 7.2E-06 49.7 18.3 126 488-630 89-228 (282)
198 COG3898 Uncharacterized membra 96.2 1.8 3.8E-05 44.6 29.1 140 512-660 246-391 (531)
199 PF13414 TPR_11: TPR repeat; P 96.2 0.0079 1.7E-07 46.5 4.4 63 567-629 4-69 (69)
200 PF07079 DUF1347: Protein of u 96.1 2.2 4.8E-05 44.8 37.9 19 413-431 389-408 (549)
201 PRK10803 tol-pal system protei 96.1 0.048 1E-06 54.7 10.7 60 601-660 183-245 (263)
202 PF03704 BTAD: Bacterial trans 96.1 0.075 1.6E-06 48.3 11.2 61 600-660 64-124 (146)
203 PF13428 TPR_14: Tetratricopep 96.0 0.013 2.8E-07 40.4 4.5 42 599-640 2-43 (44)
204 PF12688 TPR_5: Tetratrico pep 96.0 0.039 8.5E-07 47.7 8.4 82 575-656 10-99 (120)
205 KOG0550 Molecular chaperone (D 96.0 0.14 3.1E-06 52.6 13.5 152 504-661 178-350 (486)
206 KOG1538 Uncharacterized conser 95.9 0.79 1.7E-05 49.9 19.0 222 138-424 602-825 (1081)
207 PRK10803 tol-pal system protei 95.9 0.11 2.3E-06 52.3 12.2 63 570-632 184-251 (263)
208 KOG2796 Uncharacterized conser 95.8 0.28 6.2E-06 47.3 13.6 134 499-632 181-320 (366)
209 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.034 7.5E-07 58.6 8.4 62 566-627 75-141 (453)
210 KOG0550 Molecular chaperone (D 95.8 1.5 3.2E-05 45.5 19.4 88 502-592 256-347 (486)
211 KOG2041 WD40 repeat protein [G 95.7 4.4 9.6E-05 44.8 25.5 200 131-360 689-901 (1189)
212 PF13371 TPR_9: Tetratricopept 95.7 0.035 7.7E-07 43.3 6.4 63 574-636 3-67 (73)
213 PRK10866 outer membrane biogen 95.6 2.1 4.5E-05 42.6 19.8 50 540-589 185-235 (243)
214 KOG4555 TPR repeat-containing 95.6 0.091 2E-06 44.8 8.3 89 575-663 52-146 (175)
215 PF09205 DUF1955: Domain of un 95.5 1 2.2E-05 38.8 14.4 140 506-664 13-152 (161)
216 KOG1920 IkappaB kinase complex 95.5 0.99 2.1E-05 52.9 19.0 94 479-593 958-1053(1265)
217 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 1.4 3.1E-05 46.8 18.8 208 494-711 74-330 (453)
218 PF13424 TPR_12: Tetratricopep 95.5 0.021 4.5E-07 45.4 4.4 68 567-659 6-73 (78)
219 COG3898 Uncharacterized membra 95.5 3.7 7.9E-05 42.4 24.1 294 273-603 85-400 (531)
220 PF13281 DUF4071: Domain of un 95.4 3.3 7.1E-05 43.5 20.9 34 599-632 306-339 (374)
221 KOG2280 Vacuolar assembly/sort 95.4 6.2 0.00013 44.3 26.9 352 109-492 399-789 (829)
222 KOG2796 Uncharacterized conser 95.3 0.74 1.6E-05 44.6 14.5 139 303-444 179-325 (366)
223 PF12921 ATP13: Mitochondrial 95.0 0.26 5.7E-06 43.1 10.1 77 496-572 3-94 (126)
224 PF04184 ST7: ST7 protein; In 95.0 0.57 1.2E-05 49.8 14.1 153 507-671 180-334 (539)
225 KOG0543 FKBP-type peptidyl-pro 95.0 0.15 3.3E-06 52.6 9.8 63 599-661 258-320 (397)
226 KOG0543 FKBP-type peptidyl-pro 94.7 0.82 1.8E-05 47.4 14.0 95 566-660 257-354 (397)
227 smart00299 CLH Clathrin heavy 94.5 1.2 2.6E-05 40.0 13.5 125 442-609 11-136 (140)
228 PF13424 TPR_12: Tetratricopep 94.4 0.14 3.1E-06 40.5 6.5 59 533-591 8-71 (78)
229 COG4235 Cytochrome c biogenesi 94.4 0.71 1.5E-05 46.0 12.4 109 494-607 155-269 (287)
230 PF13525 YfiO: Outer membrane 94.4 3.9 8.4E-05 39.5 17.6 56 411-466 13-70 (203)
231 PRK11906 transcriptional regul 94.3 0.58 1.3E-05 49.7 12.3 62 597-658 337-398 (458)
232 PF13525 YfiO: Outer membrane 94.3 2 4.3E-05 41.5 15.4 140 500-661 10-170 (203)
233 KOG1941 Acetylcholine receptor 94.3 0.55 1.2E-05 47.5 11.3 162 496-657 84-271 (518)
234 PF07035 Mic1: Colon cancer-as 94.3 4.4 9.4E-05 37.3 16.3 123 459-615 15-137 (167)
235 PF03704 BTAD: Bacterial trans 94.2 0.48 1E-05 43.0 10.4 72 497-569 64-139 (146)
236 PF04184 ST7: ST7 protein; In 93.9 3.1 6.7E-05 44.6 16.5 99 535-633 264-381 (539)
237 KOG1130 Predicted G-alpha GTPa 93.8 0.46 1E-05 48.8 10.0 260 309-591 25-340 (639)
238 KOG3941 Intermediate in Toll s 93.7 1.6 3.5E-05 42.7 12.8 81 459-546 93-174 (406)
239 PF04053 Coatomer_WDAD: Coatom 93.6 2.1 4.5E-05 46.6 15.3 78 380-468 326-403 (443)
240 PF12921 ATP13: Mitochondrial 93.6 0.54 1.2E-05 41.1 8.9 47 299-345 50-96 (126)
241 PF10300 DUF3808: Protein of u 93.5 3.3 7.1E-05 45.8 17.1 160 498-660 191-375 (468)
242 PRK11906 transcriptional regul 93.3 2.5 5.5E-05 45.1 14.9 141 511-655 274-430 (458)
243 KOG3941 Intermediate in Toll s 93.2 0.42 9.2E-06 46.6 8.1 96 89-184 55-173 (406)
244 PF09205 DUF1955: Domain of un 93.1 5.1 0.00011 34.7 13.4 135 415-562 14-151 (161)
245 KOG2066 Vacuolar assembly/sort 93.0 20 0.00042 40.8 25.6 50 271-320 393-442 (846)
246 COG3118 Thioredoxin domain-con 93.0 3.9 8.5E-05 40.8 14.6 117 538-661 142-265 (304)
247 COG0457 NrfG FOG: TPR repeat [ 92.9 9.3 0.0002 36.9 23.1 156 502-661 102-265 (291)
248 PF13512 TPR_18: Tetratricopep 92.9 1.7 3.6E-05 38.6 10.9 57 577-633 21-82 (142)
249 COG1729 Uncharacterized protei 92.6 0.92 2E-05 44.7 9.7 87 506-594 152-243 (262)
250 COG4785 NlpI Lipoprotein NlpI, 92.6 1.2 2.5E-05 42.0 9.7 153 505-663 75-268 (297)
251 COG4105 ComL DNA uptake lipopr 92.4 12 0.00026 36.8 17.7 144 494-661 33-196 (254)
252 smart00299 CLH Clathrin heavy 92.4 5.8 0.00013 35.5 14.4 85 138-226 11-95 (140)
253 PF04053 Coatomer_WDAD: Coatom 92.2 1.9 4E-05 47.0 12.6 133 504-662 270-403 (443)
254 KOG2066 Vacuolar assembly/sort 92.1 25 0.00055 39.9 20.8 76 169-247 392-467 (846)
255 PF09613 HrpB1_HrpK: Bacterial 91.9 4.7 0.0001 36.5 12.5 91 537-630 17-109 (160)
256 PF07719 TPR_2: Tetratricopept 91.1 0.41 9E-06 30.4 3.9 32 600-631 3-34 (34)
257 PRK15331 chaperone protein Sic 91.0 7.3 0.00016 35.5 12.9 86 505-594 47-133 (165)
258 PF10300 DUF3808: Protein of u 90.7 2 4.4E-05 47.4 11.2 143 515-661 177-334 (468)
259 PF00515 TPR_1: Tetratricopept 90.6 0.35 7.7E-06 30.8 3.2 31 600-630 3-33 (34)
260 PF04097 Nic96: Nup93/Nic96; 90.6 12 0.00027 42.9 17.7 37 410-448 265-301 (613)
261 PF13170 DUF4003: Protein of u 90.5 8.9 0.00019 39.3 14.8 141 419-580 78-231 (297)
262 KOG1920 IkappaB kinase complex 90.4 25 0.00054 42.0 19.4 256 70-399 792-1053(1265)
263 COG1729 Uncharacterized protei 90.1 3.1 6.8E-05 41.0 10.6 101 532-633 144-250 (262)
264 COG5107 RNA14 Pre-mRNA 3'-end 90.0 29 0.00063 36.8 29.1 129 438-593 397-529 (660)
265 KOG2114 Vacuolar assembly/sort 89.6 45 0.00097 38.4 29.8 81 109-196 378-458 (933)
266 PF13512 TPR_18: Tetratricopep 89.1 9.9 0.00021 33.8 11.9 19 614-632 115-133 (142)
267 KOG0890 Protein kinase of the 88.8 88 0.0019 40.8 32.3 128 272-409 1422-1552(2382)
268 PF13176 TPR_7: Tetratricopept 88.8 0.84 1.8E-05 29.7 3.9 26 634-659 1-26 (36)
269 PF13281 DUF4071: Domain of un 88.6 36 0.00077 36.0 23.3 44 481-524 291-334 (374)
270 KOG1258 mRNA processing protei 88.6 44 0.00096 37.0 34.6 139 507-650 343-493 (577)
271 KOG2610 Uncharacterized conser 88.4 11 0.00023 38.3 12.8 95 494-592 136-235 (491)
272 PF07035 Mic1: Colon cancer-as 88.1 19 0.00041 33.2 13.5 134 220-366 14-149 (167)
273 PF02259 FAT: FAT domain; Int 88.1 38 0.00083 35.7 21.2 148 494-644 145-304 (352)
274 PRK09687 putative lyase; Provi 87.9 34 0.00073 34.9 24.6 76 369-449 203-278 (280)
275 PRK09687 putative lyase; Provi 87.5 36 0.00077 34.7 23.9 238 91-347 29-277 (280)
276 KOG1585 Protein required for f 87.5 29 0.00064 33.7 18.1 78 405-492 33-110 (308)
277 PF13176 TPR_7: Tetratricopept 87.4 1.3 2.9E-05 28.7 4.3 26 497-522 1-26 (36)
278 KOG4279 Serine/threonine prote 87.4 7.5 0.00016 43.5 12.0 183 406-633 204-401 (1226)
279 PF00515 TPR_1: Tetratricopept 86.8 1.6 3.4E-05 27.7 4.3 32 496-529 2-33 (34)
280 PF09613 HrpB1_HrpK: Bacterial 86.7 2.8 6.2E-05 37.9 7.2 54 609-662 21-74 (160)
281 KOG4234 TPR repeat-containing 86.5 1.5 3.2E-05 40.8 5.4 65 599-663 135-199 (271)
282 KOG2114 Vacuolar assembly/sort 86.5 70 0.0015 37.0 30.5 117 173-297 338-458 (933)
283 PF13428 TPR_14: Tetratricopep 86.5 2.2 4.8E-05 29.2 5.2 33 497-531 3-35 (44)
284 PF14853 Fis1_TPR_C: Fis1 C-te 86.4 3.3 7.1E-05 29.7 6.0 32 604-635 7-38 (53)
285 TIGR02561 HrpB1_HrpK type III 85.3 3.1 6.7E-05 37.0 6.6 54 610-663 22-75 (153)
286 PF10602 RPN7: 26S proteasome 85.3 13 0.00029 34.8 11.5 96 497-594 38-141 (177)
287 COG3118 Thioredoxin domain-con 85.2 36 0.00077 34.3 14.4 144 504-650 143-290 (304)
288 COG3629 DnrI DNA-binding trans 84.7 4.4 9.6E-05 40.7 8.2 61 600-660 155-215 (280)
289 COG3629 DnrI DNA-binding trans 84.4 10 0.00022 38.2 10.6 79 496-575 154-236 (280)
290 TIGR02561 HrpB1_HrpK type III 84.1 17 0.00037 32.5 10.5 72 542-616 22-96 (153)
291 KOG2610 Uncharacterized conser 84.0 13 0.00029 37.6 10.9 161 507-670 115-285 (491)
292 PF13181 TPR_8: Tetratricopept 83.8 1.8 3.9E-05 27.4 3.5 30 600-629 3-32 (34)
293 KOG4648 Uncharacterized conser 83.2 2.9 6.2E-05 42.2 6.1 112 536-654 103-217 (536)
294 KOG4555 TPR repeat-containing 82.9 19 0.00041 31.2 9.9 51 506-558 54-105 (175)
295 PF06552 TOM20_plant: Plant sp 82.5 10 0.00022 35.0 8.9 45 615-659 52-100 (186)
296 PF00637 Clathrin: Region in C 82.2 1.5 3.2E-05 39.6 3.6 86 139-227 12-97 (143)
297 PF07719 TPR_2: Tetratricopept 81.7 3 6.6E-05 26.2 4.0 31 497-529 3-33 (34)
298 KOG1941 Acetylcholine receptor 79.9 80 0.0017 32.7 19.8 88 405-492 85-181 (518)
299 KOG4648 Uncharacterized conser 79.2 5 0.00011 40.6 6.2 78 502-590 104-182 (536)
300 COG3947 Response regulator con 79.0 75 0.0016 31.9 15.6 148 511-660 149-341 (361)
301 PF07721 TPR_4: Tetratricopept 78.9 2.9 6.2E-05 24.8 2.9 24 633-656 2-25 (26)
302 PF10602 RPN7: 26S proteasome 78.4 40 0.00087 31.6 11.9 61 405-465 38-100 (177)
303 PF13170 DUF4003: Protein of u 78.3 64 0.0014 33.1 14.2 63 217-279 79-150 (297)
304 PF13431 TPR_17: Tetratricopep 78.2 2.1 4.5E-05 27.4 2.3 25 562-586 8-33 (34)
305 PF06552 TOM20_plant: Plant sp 78.0 23 0.00049 32.9 9.5 97 533-664 31-139 (186)
306 PF00637 Clathrin: Region in C 77.1 1.7 3.8E-05 39.1 2.3 85 343-430 13-97 (143)
307 PF02259 FAT: FAT domain; Int 76.9 1E+02 0.0022 32.4 20.4 66 596-661 144-213 (352)
308 PF13374 TPR_10: Tetratricopep 76.5 4.5 9.8E-05 26.8 3.8 28 633-660 3-30 (42)
309 PHA02875 ankyrin repeat protei 76.5 1.2E+02 0.0026 32.9 17.1 159 126-297 22-192 (413)
310 COG0457 NrfG FOG: TPR repeat [ 76.4 72 0.0016 30.3 28.3 200 404-630 60-268 (291)
311 KOG4570 Uncharacterized conser 76.1 18 0.00039 36.4 8.9 96 265-365 59-163 (418)
312 PF08631 SPO22: Meiosis protei 76.0 96 0.0021 31.6 21.5 19 348-366 4-22 (278)
313 PF13374 TPR_10: Tetratricopep 75.5 6.9 0.00015 25.9 4.5 28 496-523 3-30 (42)
314 KOG4234 TPR repeat-containing 75.4 40 0.00087 31.8 10.4 26 607-632 177-202 (271)
315 cd00923 Cyt_c_Oxidase_Va Cytoc 75.2 20 0.00043 29.3 7.3 61 512-574 24-84 (103)
316 PF10345 Cohesin_load: Cohesin 75.0 1.7E+02 0.0036 33.9 39.2 154 506-659 415-604 (608)
317 PRK15180 Vi polysaccharide bio 74.8 24 0.00052 37.6 9.9 120 507-630 301-423 (831)
318 PF04097 Nic96: Nup93/Nic96; 74.8 1.7E+02 0.0036 33.8 23.5 65 200-266 112-183 (613)
319 PF13181 TPR_8: Tetratricopept 73.9 7.3 0.00016 24.5 4.1 28 633-660 2-29 (34)
320 COG4649 Uncharacterized protei 73.8 36 0.00077 31.3 9.4 53 181-233 144-200 (221)
321 PF02284 COX5A: Cytochrome c o 73.8 24 0.00052 29.2 7.6 59 421-481 28-87 (108)
322 PRK10941 hypothetical protein; 73.0 31 0.00068 34.7 10.2 61 601-661 184-244 (269)
323 cd00923 Cyt_c_Oxidase_Va Cytoc 72.9 32 0.0007 28.1 8.0 60 592-663 36-95 (103)
324 KOG0276 Vesicle coat complex C 72.7 31 0.00067 38.0 10.4 76 382-468 647-722 (794)
325 PRK13800 putative oxidoreducta 72.6 2.3E+02 0.0051 34.5 24.6 82 528-613 754-836 (897)
326 PF13174 TPR_6: Tetratricopept 72.5 4.5 9.7E-05 25.1 2.8 28 634-661 2-29 (33)
327 PF02284 COX5A: Cytochrome c o 72.5 17 0.00036 30.0 6.4 59 514-574 29-87 (108)
328 KOG0276 Vesicle coat complex C 71.2 85 0.0018 34.9 13.1 128 499-657 618-746 (794)
329 KOG4570 Uncharacterized conser 70.3 29 0.00063 35.0 8.8 102 163-265 58-165 (418)
330 PF13762 MNE1: Mitochondrial s 70.2 31 0.00067 30.9 8.3 77 172-248 42-128 (145)
331 KOG1498 26S proteasome regulat 70.2 1.5E+02 0.0032 31.2 14.4 112 571-682 136-262 (439)
332 PF13934 ELYS: Nuclear pore co 69.7 48 0.001 32.5 10.5 106 498-612 79-186 (226)
333 COG4105 ComL DNA uptake lipopr 69.1 1.2E+02 0.0027 29.9 20.2 54 414-467 45-100 (254)
334 KOG2063 Vacuolar assembly/sort 69.1 2.3E+02 0.005 33.8 17.0 38 504-541 600-637 (877)
335 COG4455 ImpE Protein of avirul 68.7 19 0.00041 34.4 6.8 65 569-633 4-70 (273)
336 smart00028 TPR Tetratricopepti 68.5 10 0.00022 22.5 3.9 20 637-656 6-25 (34)
337 PRK13800 putative oxidoreducta 68.3 2.9E+02 0.0062 33.8 22.9 255 189-466 624-880 (897)
338 PRK15180 Vi polysaccharide bio 68.1 31 0.00067 36.8 9.0 85 576-660 333-419 (831)
339 PF11207 DUF2989: Protein of u 67.7 38 0.00082 32.1 8.7 74 512-586 123-198 (203)
340 COG5107 RNA14 Pre-mRNA 3'-end 67.6 1.8E+02 0.0039 31.2 33.7 131 64-196 37-188 (660)
341 PF11207 DUF2989: Protein of u 67.5 31 0.00067 32.7 8.1 70 583-652 123-198 (203)
342 PF07575 Nucleopor_Nup85: Nup8 67.3 1.2E+02 0.0026 34.7 14.7 29 508-536 508-536 (566)
343 KOG1585 Protein required for f 67.1 1.3E+02 0.0029 29.5 12.1 131 502-657 38-175 (308)
344 KOG1924 RhoA GTPase effector D 66.2 13 0.00028 42.0 6.1 29 332-363 796-824 (1102)
345 PF10579 Rapsyn_N: Rapsyn N-te 65.7 14 0.0003 28.9 4.5 47 542-588 18-65 (80)
346 KOG2063 Vacuolar assembly/sort 65.6 3E+02 0.0064 32.9 17.5 130 202-348 506-637 (877)
347 PF13174 TPR_6: Tetratricopept 64.6 11 0.00023 23.3 3.3 27 604-630 6-32 (33)
348 TIGR02508 type_III_yscG type I 64.1 24 0.00051 29.0 5.7 55 73-129 44-98 (115)
349 KOG1308 Hsp70-interacting prot 63.5 4.1 8.8E-05 41.4 1.7 90 579-668 127-218 (377)
350 PF13929 mRNA_stabil: mRNA sta 63.3 1.7E+02 0.0038 29.5 14.6 58 369-426 199-261 (292)
351 PF04910 Tcf25: Transcriptiona 63.2 2.1E+02 0.0046 30.4 15.6 99 529-630 99-225 (360)
352 COG2976 Uncharacterized protei 61.7 1.5E+02 0.0032 28.1 14.3 110 513-630 70-191 (207)
353 PRK12798 chemotaxis protein; R 61.6 2.3E+02 0.005 30.3 19.9 134 508-644 161-302 (421)
354 KOG0545 Aryl-hydrocarbon recep 61.5 1.7E+02 0.0037 28.8 11.9 88 574-661 186-293 (329)
355 TIGR02508 type_III_yscG type I 60.3 98 0.0021 25.6 9.4 86 353-442 21-106 (115)
356 TIGR02710 CRISPR-associated pr 60.2 1.4E+02 0.0029 31.8 12.1 31 504-534 139-169 (380)
357 KOG1586 Protein required for f 59.9 1.8E+02 0.0038 28.5 16.1 58 574-631 162-228 (288)
358 PHA02875 ankyrin repeat protei 59.7 2.6E+02 0.0056 30.3 16.3 205 145-372 10-230 (413)
359 PRK11619 lytic murein transgly 59.2 3.4E+02 0.0074 31.5 31.4 114 509-625 255-373 (644)
360 KOG0551 Hsp90 co-chaperone CNS 58.4 35 0.00075 34.9 7.0 93 566-658 81-179 (390)
361 COG1747 Uncharacterized N-term 58.3 2.9E+02 0.0062 30.4 19.3 160 405-594 68-233 (711)
362 PF15161 Neuropep_like: Neurop 57.5 4.2 9E-05 28.6 0.4 16 756-772 11-26 (65)
363 PF14561 TPR_20: Tetratricopep 55.5 28 0.00061 28.3 5.0 44 618-661 8-51 (90)
364 KOG1586 Protein required for f 54.6 2.2E+02 0.0047 27.9 14.7 61 509-570 128-193 (288)
365 smart00028 TPR Tetratricopepti 54.3 25 0.00054 20.6 3.8 27 497-523 3-29 (34)
366 TIGR03504 FimV_Cterm FimV C-te 54.0 22 0.00048 24.4 3.5 26 637-662 4-29 (44)
367 PF04190 DUF410: Protein of un 53.2 2.5E+02 0.0055 28.2 13.3 159 80-264 2-170 (260)
368 KOG0376 Serine-threonine phosp 52.7 11 0.00024 40.2 2.8 93 538-633 12-107 (476)
369 PF07163 Pex26: Pex26 protein; 52.1 1.5E+02 0.0032 29.8 9.9 87 502-591 90-183 (309)
370 PF10345 Cohesin_load: Cohesin 51.8 4.3E+02 0.0094 30.5 33.3 64 313-376 373-451 (608)
371 COG4455 ImpE Protein of avirul 51.4 2.4E+02 0.0051 27.3 11.9 122 497-631 3-138 (273)
372 smart00386 HAT HAT (Half-A-TPR 51.1 29 0.00064 21.0 3.7 29 612-640 1-29 (33)
373 PF14427 Pput2613-deam: Pput_2 50.7 33 0.00072 28.5 4.5 58 728-785 45-102 (118)
374 PF10366 Vps39_1: Vacuolar sor 50.5 1.3E+02 0.0029 25.4 8.5 27 405-431 41-67 (108)
375 KOG3364 Membrane protein invol 50.5 78 0.0017 27.9 6.9 47 614-660 51-99 (149)
376 PF09986 DUF2225: Uncharacteri 50.5 1.5E+02 0.0033 28.7 10.1 45 617-661 144-194 (214)
377 PF08631 SPO22: Meiosis protei 49.5 3E+02 0.0065 28.0 24.5 59 272-330 86-150 (278)
378 PF09670 Cas_Cas02710: CRISPR- 49.2 2.1E+02 0.0046 30.6 11.9 55 504-559 140-198 (379)
379 PF14669 Asp_Glu_race_2: Putat 48.4 2.4E+02 0.0052 26.6 14.0 90 297-397 103-206 (233)
380 COG1747 Uncharacterized N-term 48.3 4.1E+02 0.0089 29.3 18.6 157 497-661 68-234 (711)
381 KOG4507 Uncharacterized conser 44.8 64 0.0014 35.6 6.8 100 541-643 618-721 (886)
382 PF11846 DUF3366: Domain of un 44.2 80 0.0017 30.0 7.1 34 596-629 142-175 (193)
383 PF11663 Toxin_YhaV: Toxin wit 42.6 30 0.00065 30.2 3.3 32 111-144 107-138 (140)
384 PF14853 Fis1_TPR_C: Fis1 C-te 42.3 81 0.0018 22.6 5.0 35 501-537 7-41 (53)
385 KOG4077 Cytochrome c oxidase, 42.0 1.5E+02 0.0032 25.8 7.2 58 515-574 69-126 (149)
386 KOG4642 Chaperone-dependent E3 42.0 76 0.0017 30.9 6.2 65 595-659 40-105 (284)
387 TIGR03504 FimV_Cterm FimV C-te 41.5 60 0.0013 22.3 4.0 25 501-525 5-29 (44)
388 COG4785 NlpI Lipoprotein NlpI, 41.4 58 0.0013 31.2 5.2 62 599-660 100-161 (297)
389 KOG1464 COP9 signalosome, subu 41.2 1.6E+02 0.0036 29.1 8.4 92 569-660 68-173 (440)
390 KOG0292 Vesicle coat complex C 41.1 36 0.00079 39.3 4.6 74 536-625 626-699 (1202)
391 KOG3364 Membrane protein invol 40.8 2.6E+02 0.0057 24.8 8.9 30 604-633 77-106 (149)
392 COG4649 Uncharacterized protei 40.7 3.1E+02 0.0066 25.6 16.3 121 505-626 68-195 (221)
393 PF11525 CopK: Copper resistan 40.7 10 0.00022 28.3 0.2 20 777-796 8-27 (73)
394 PF09670 Cas_Cas02710: CRISPR- 40.6 2.8E+02 0.0061 29.7 11.2 54 539-594 140-197 (379)
395 PF13762 MNE1: Mitochondrial s 39.8 2.8E+02 0.0061 24.9 11.4 79 498-579 42-128 (145)
396 KOG1550 Extracellular protein 39.4 6.2E+02 0.014 28.8 19.5 281 104-415 253-552 (552)
397 PF14863 Alkyl_sulf_dimr: Alky 38.9 1.1E+02 0.0025 27.3 6.6 64 583-649 58-121 (141)
398 KOG2034 Vacuolar sorting prote 38.4 7.5E+02 0.016 29.4 18.1 295 142-465 366-688 (911)
399 KOG4521 Nuclear pore complex, 38.1 8.5E+02 0.019 30.0 18.1 151 504-654 929-1124(1480)
400 PRK10941 hypothetical protein; 37.7 1.8E+02 0.0039 29.3 8.6 66 570-635 185-252 (269)
401 PF10579 Rapsyn_N: Rapsyn N-te 37.4 82 0.0018 24.8 4.7 47 507-553 18-66 (80)
402 PF12968 DUF3856: Domain of Un 37.3 2.3E+02 0.005 24.5 7.5 23 637-659 105-127 (144)
403 KOG2581 26S proteasome regulat 37.2 5.5E+02 0.012 27.5 14.8 123 508-631 139-280 (493)
404 PF07720 TPR_3: Tetratricopept 36.6 85 0.0018 20.4 4.0 30 601-630 4-35 (36)
405 PF11663 Toxin_YhaV: Toxin wit 36.6 34 0.00073 30.0 2.7 31 508-540 108-138 (140)
406 PF13934 ELYS: Nuclear pore co 36.5 4.2E+02 0.0091 25.9 13.7 93 524-625 73-167 (226)
407 PF07163 Pex26: Pex26 protein; 36.3 1.8E+02 0.0038 29.3 7.8 87 104-192 88-181 (309)
408 PRK10564 maltose regulon perip 36.0 67 0.0015 32.6 5.1 40 498-537 260-299 (303)
409 cd00280 TRFH Telomeric Repeat 35.9 1.7E+02 0.0037 27.4 7.2 28 604-632 117-144 (200)
410 PF08311 Mad3_BUB1_I: Mad3/BUB 35.6 2.6E+02 0.0056 24.4 8.3 59 530-591 65-124 (126)
411 PF11848 DUF3368: Domain of un 35.6 1E+02 0.0023 21.5 4.7 29 249-277 16-44 (48)
412 KOG4077 Cytochrome c oxidase, 35.6 1.8E+02 0.0039 25.3 6.7 58 421-480 67-125 (149)
413 PF09477 Type_III_YscG: Bacter 35.0 2.5E+02 0.0055 23.7 7.3 82 146-230 18-99 (116)
414 PF15469 Sec5: Exocyst complex 35.0 3.8E+02 0.0083 25.0 10.3 25 535-559 91-115 (182)
415 PF13929 mRNA_stabil: mRNA sta 34.8 5.1E+02 0.011 26.4 22.2 110 511-620 144-260 (292)
416 KOG3824 Huntingtin interacting 34.7 75 0.0016 32.1 5.1 58 578-635 128-187 (472)
417 PF10366 Vps39_1: Vacuolar sor 34.4 1.9E+02 0.0041 24.5 7.0 40 285-329 28-67 (108)
418 PF04190 DUF410: Protein of un 34.4 4.9E+02 0.011 26.1 15.5 81 371-466 89-169 (260)
419 PF04910 Tcf25: Transcriptiona 33.9 6E+02 0.013 27.0 15.6 64 597-660 99-167 (360)
420 PRK10564 maltose regulon perip 33.8 60 0.0013 32.9 4.4 44 198-241 254-298 (303)
421 PF11848 DUF3368: Domain of un 33.7 1.5E+02 0.0033 20.6 5.3 33 506-538 13-45 (48)
422 COG3947 Response regulator con 33.6 5.3E+02 0.011 26.3 13.4 70 406-476 282-356 (361)
423 KOG4279 Serine/threonine prote 33.2 8.3E+02 0.018 28.4 13.1 176 204-432 205-395 (1226)
424 cd08819 CARD_MDA5_2 Caspase ac 32.9 2.5E+02 0.0053 22.7 6.7 39 384-423 48-86 (88)
425 PF04090 RNA_pol_I_TF: RNA pol 32.8 4.5E+02 0.0097 25.1 10.4 129 494-639 40-185 (199)
426 PF14689 SPOB_a: Sensor_kinase 32.8 67 0.0015 23.9 3.6 26 498-523 26-51 (62)
427 PF08311 Mad3_BUB1_I: Mad3/BUB 32.8 2.5E+02 0.0054 24.5 7.8 42 616-657 81-124 (126)
428 PF11768 DUF3312: Protein of u 32.6 3.3E+02 0.0072 30.3 10.0 25 304-328 411-435 (545)
429 COG4976 Predicted methyltransf 32.0 58 0.0013 31.5 3.7 55 577-631 6-62 (287)
430 TIGR02270 conserved hypothetic 31.7 7E+02 0.015 27.1 23.7 26 374-399 254-279 (410)
431 KOG2422 Uncharacterized conser 31.5 7.7E+02 0.017 27.7 12.3 132 540-671 248-418 (665)
432 COG5431 Uncharacterized metal- 31.5 14 0.00031 30.1 -0.2 12 789-800 46-57 (117)
433 PF12862 Apc5: Anaphase-promot 31.0 1.4E+02 0.0031 24.3 5.7 52 609-660 9-69 (94)
434 PRK14135 recX recombination re 30.9 5.6E+02 0.012 25.7 20.5 81 515-597 126-207 (263)
435 KOG0890 Protein kinase of the 30.9 1.5E+03 0.032 30.6 30.7 64 597-662 1669-1732(2382)
436 PF11768 DUF3312: Protein of u 30.8 3.5E+02 0.0075 30.1 9.8 26 202-227 410-435 (545)
437 cd02679 MIT_spastin MIT: domai 30.6 29 0.00063 27.4 1.3 64 581-660 4-67 (79)
438 cd00280 TRFH Telomeric Repeat 30.5 2.6E+02 0.0057 26.2 7.4 36 572-607 117-152 (200)
439 KOG1464 COP9 signalosome, subu 30.3 5.7E+02 0.012 25.6 17.9 203 284-487 41-286 (440)
440 PHA03100 ankyrin repeat protei 30.1 7.8E+02 0.017 27.1 16.2 14 181-194 117-130 (480)
441 KOG4642 Chaperone-dependent E3 30.1 5.5E+02 0.012 25.4 9.8 105 510-619 25-138 (284)
442 PF10155 DUF2363: Uncharacteri 29.8 3.8E+02 0.0083 23.4 12.3 105 441-557 21-125 (126)
443 PF14376 Haem_bd: Haem-binding 29.5 18 0.00039 32.2 0.1 10 758-767 41-50 (137)
444 PRK13342 recombination factor 29.5 7.6E+02 0.016 26.8 16.9 167 215-397 152-330 (413)
445 KOG2471 TPR repeat-containing 29.5 3.7E+02 0.0079 29.4 9.3 58 608-668 216-273 (696)
446 KOG3507 DNA-directed RNA polym 29.4 18 0.0004 26.0 0.0 10 759-768 21-30 (62)
447 KOG2758 Translation initiation 29.0 6.6E+02 0.014 25.9 12.8 80 547-626 109-195 (432)
448 PF08225 Antimicrobial19: Pseu 29.0 24 0.00052 19.4 0.4 9 764-772 12-20 (23)
449 PHA03100 ankyrin repeat protei 28.9 8.2E+02 0.018 27.0 14.6 110 179-296 80-199 (480)
450 PF07575 Nucleopor_Nup85: Nup8 28.6 3.4E+02 0.0075 31.0 10.1 75 321-398 390-464 (566)
451 PF14689 SPOB_a: Sensor_kinase 28.4 1.2E+02 0.0025 22.7 4.2 30 529-558 22-51 (62)
452 smart00638 LPD_N Lipoprotein N 28.0 9.5E+02 0.021 27.4 24.1 58 374-433 312-370 (574)
453 PRK13184 pknD serine/threonine 27.3 1.2E+03 0.026 28.4 19.5 130 531-660 689-832 (932)
454 PF11846 DUF3366: Domain of un 27.3 1.5E+02 0.0032 28.1 5.9 52 542-593 120-171 (193)
455 PF09477 Type_III_YscG: Bacter 27.0 3.9E+02 0.0085 22.6 9.5 79 352-433 21-99 (116)
456 COG2909 MalT ATP-dependent tra 26.6 1.2E+03 0.025 28.0 18.8 179 414-593 426-645 (894)
457 COG5108 RPO41 Mitochondrial DN 26.4 2.6E+02 0.0056 31.7 7.8 34 332-365 98-131 (1117)
458 PF02847 MA3: MA3 domain; Int 26.3 1.2E+02 0.0025 25.7 4.6 22 408-429 7-28 (113)
459 COG2909 MalT ATP-dependent tra 26.1 1.2E+03 0.025 27.9 26.0 91 535-626 623-725 (894)
460 cd08819 CARD_MDA5_2 Caspase ac 26.0 3.6E+02 0.0077 21.8 7.0 64 255-320 22-85 (88)
461 KOG1258 mRNA processing protei 25.5 1E+03 0.022 26.9 27.4 120 531-652 298-420 (577)
462 PF05119 Terminase_4: Phage te 25.5 3.2E+02 0.0069 22.4 7.0 34 685-718 57-90 (100)
463 smart00777 Mad3_BUB1_I Mad3/BU 25.2 4.2E+02 0.0092 23.1 7.6 44 547-591 80-124 (125)
464 KOG2659 LisH motif-containing 25.2 6.5E+02 0.014 24.6 13.1 93 498-593 29-130 (228)
465 COG5108 RPO41 Mitochondrial DN 25.2 4.1E+02 0.0089 30.2 9.0 24 408-431 33-56 (1117)
466 PRK14015 pepN aminopeptidase N 24.5 1.3E+03 0.029 28.0 16.0 125 529-654 713-846 (875)
467 PF01147 Crust_neurohorm: Crus 24.1 15 0.00033 28.2 -1.2 14 756-769 18-31 (73)
468 cd08326 CARD_CASP9 Caspase act 23.8 3.2E+02 0.0069 21.9 6.2 61 358-422 20-80 (84)
469 KOG4334 Uncharacterized conser 23.8 40 0.00087 35.9 1.3 144 230-385 410-573 (650)
470 COG5159 RPN6 26S proteasome re 23.4 7.9E+02 0.017 24.9 17.3 152 310-462 12-189 (421)
471 PLN03192 Voltage-dependent pot 22.6 9.1E+02 0.02 29.1 12.7 20 276-295 625-644 (823)
472 KOG0292 Vesicle coat complex C 21.8 5.9E+02 0.013 30.2 9.7 122 482-626 652-781 (1202)
473 smart00544 MA3 Domain in DAP-5 21.7 4.8E+02 0.01 21.9 7.5 84 305-389 6-89 (113)
474 COG2912 Uncharacterized conser 21.7 2.4E+02 0.0052 28.3 6.1 59 602-660 185-243 (269)
475 PF04090 RNA_pol_I_TF: RNA pol 21.4 5.3E+02 0.012 24.6 8.1 89 600-688 43-132 (199)
476 cd07229 Pat_TGL3_like Triacylg 21.3 3.1E+02 0.0067 29.4 7.3 54 561-614 181-253 (391)
477 KOG2391 Vacuolar sorting prote 21.3 6.6E+02 0.014 26.0 9.0 38 165-202 295-332 (365)
478 PRK08691 DNA polymerase III su 21.2 7.3E+02 0.016 29.0 10.6 99 318-437 181-279 (709)
479 TIGR02270 conserved hypothetic 21.2 1.1E+03 0.023 25.7 25.2 181 267-464 97-278 (410)
480 PRK11639 zinc uptake transcrip 20.9 2.7E+02 0.0058 25.8 6.1 45 205-249 30-74 (169)
481 TIGR02414 pepN_proteo aminopep 20.8 1.5E+03 0.033 27.4 16.1 151 499-653 676-835 (863)
482 PF11817 Foie-gras_1: Foie gra 20.7 3E+02 0.0066 27.3 6.9 21 538-558 186-206 (247)
483 KOG1923 Rac1 GTPase effector F 20.7 1.6E+02 0.0034 33.9 5.1 50 1-50 297-346 (830)
484 PF02847 MA3: MA3 domain; Int 20.3 1.4E+02 0.003 25.2 3.9 22 205-226 7-28 (113)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-148 Score=1317.24 Aligned_cols=730 Identities=37% Similarity=0.696 Sum_probs=718.3
Q ss_pred CChhHH-HHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHh
Q 003710 67 RNITKT-RALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACA 145 (801)
Q Consensus 67 ~~~~~~-~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 145 (801)
.+..+. .|+++|+++|+++.|+++|++|+++|+++||++|.+|++.|++++|+++|++|...|+.||.+||+++|++|+
T Consensus 119 ~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~ 198 (857)
T PLN03077 119 LGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198 (857)
T ss_pred CCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC
Confidence 344444 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHH
Q 003710 146 GLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKE 225 (801)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 225 (801)
+.+++..+.++|..+.+.|+.||+.++|+||.+|+++|++++|+++|++|+.||+++||+||.+|++.|++++|+++|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHH
Q 003710 226 MQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWN 305 (801)
Q Consensus 226 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~ 305 (801)
|.+.|+.||..||+.+|.+|++.|+++.|+++|..|.+.|+.||..+||+||++|+++|++++|.++|++|..||+++||
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n 358 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT 358 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc
Q 003710 306 AMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGS 385 (801)
Q Consensus 306 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~ 385 (801)
+||.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+++
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~-g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQD-NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh-CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 9999999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHH
Q 003710 386 GALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLIT 465 (801)
Q Consensus 386 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 465 (801)
|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. ++.||..||+++|.+|++.|+++.+.++|..+.
T Consensus 438 g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999985 699999999999999999999999999999999
Q ss_pred HhCCCCchHHHHHHHHHHHhcCCccccc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003710 466 KLGLVSNIYISNSIVYMYAKCGDLQTAR--------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLL 537 (801)
Q Consensus 466 ~~g~~~~~~~~~~li~~y~~~g~~~~A~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 537 (801)
+.|+.++..++|+||++|+|+|++++|. |+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 9999999999999999999999999997 88999999999999999999999999999999999999999999
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHH
Q 003710 538 SSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSA 617 (801)
Q Consensus 538 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 617 (801)
.+|++.|++++|.++|+.|.+++|+.|+..||++|+++|+++|+++||.+++++|+.+||..+|++|+++|+.+|+.+.|
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCccCCcccEEEECCEEEEEecCCCCchhHHHHHHH
Q 003710 618 EFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNV 697 (801)
Q Consensus 618 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~h~~~~~i~~~ 697 (801)
+.+++++++++|++...|++|+++|+..|+|++|.++++.|+++|++|+||+||||+++++|.|++||++||+.++||+.
T Consensus 677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~ 756 (857)
T PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTV 756 (857)
T ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCccccccchhhhccccccchHHHHHHHhccCCCCCCcEEEEeccccCCchhhhhhhhccccce
Q 003710 698 LDILLRKIGEDFYIHNVSKFSPAHLMKNRAKSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKR 777 (801)
Q Consensus 698 l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~i~i~kn~r~c~dch~~~k~~s~~~~r 777 (801)
|++|..+|++.||+||+..++++ +|++|+..+++||||||+|||||+||+|+||||+||||||+|||+++||||||++|
T Consensus 757 l~~l~~~~~~~g~~~~~~~~~~~-~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r 835 (857)
T PLN03077 757 LEGFYEKMKASGLAGSESSSMDE-IEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRR 835 (857)
T ss_pred HHHHHHHHHhCCcCCCcchhccc-cHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCe
Confidence 99999999999999999988844 77899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCccccccccccCCCC
Q 003710 778 ELIVRDPKCFHHFRNGCCSCGD 799 (801)
Q Consensus 778 ~i~~rd~~~~h~f~~g~csc~~ 799 (801)
||||||++|||||+||+|||||
T Consensus 836 ~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 836 EISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred EEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.9e-129 Score=1123.23 Aligned_cols=613 Identities=34% Similarity=0.608 Sum_probs=591.7
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhH
Q 003710 96 YLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEG-FKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNS 174 (801)
Q Consensus 96 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 174 (801)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.+.++|..|.+.|+.||+.+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999998765 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHH
Q 003710 175 LIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIG 254 (801)
Q Consensus 175 li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 254 (801)
|+++|+++|++++|+++|++|+.||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 003710 255 KEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLN 334 (801)
Q Consensus 255 ~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~ 334 (801)
+++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+. |+.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-g~~ 322 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-GVS 322 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 003710 335 PDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYV 414 (801)
Q Consensus 335 pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 414 (801)
||..||++++.+|++.|++++|.++|+.|.+.|+.+|..++|+||++|+|+|++++|.++|++|.++|+++||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998777777777777666
Q ss_pred HcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccch
Q 003710 415 RNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARD 494 (801)
Q Consensus 415 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d 494 (801)
++|+.++|+++|+
T Consensus 403 ~~G~~~~A~~lf~------------------------------------------------------------------- 415 (697)
T PLN03081 403 NHGRGTKAVEMFE------------------------------------------------------------------- 415 (697)
T ss_pred HcCCHHHHHHHHH-------------------------------------------------------------------
Confidence 6666555555554
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003710 495 VVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIID 574 (801)
Q Consensus 495 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 574 (801)
+|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++|++
T Consensus 416 -------------------------~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 416 -------------------------RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred -------------------------HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 4555678899999999999999999999999999999988899999999999999
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003710 575 LLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQI 654 (801)
Q Consensus 575 ~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 654 (801)
+|+++|++++|.+++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|+.|+++|++.|+|++|.++
T Consensus 471 ~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred HHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCccCCcccEEEECCEEEEEecCCCCchhHHHHHHHHHHHHHHHHhcCccccCCccccccchhhhccccccch
Q 003710 655 KAIMEKEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMKNRAKSPHHHS 734 (801)
Q Consensus 655 ~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hs 734 (801)
++.|+++|++|.||+|||++++++|.|++||.+||+.++||+.|++|..+|++.||.||+.+++|++++++|+..+++||
T Consensus 551 ~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hs 630 (697)
T PLN03081 551 VETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHS 630 (697)
T ss_pred HHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCcEEEEeccccCCchhhhhhhhccccceEEEEeCCCccccccccccCCCCCC
Q 003710 735 VRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPKCFHHFRNGCCSCGDYW 801 (801)
Q Consensus 735 e~la~~~~~~~~~~~~~i~i~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~csc~~~w 801 (801)
||||+|||||++|+|+||||+||||||+|||+++||||+++||||||||++|||||+||+|||||||
T Consensus 631 ekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 631 EKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-84 Score=772.15 Aligned_cols=678 Identities=26% Similarity=0.373 Sum_probs=599.2
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHH
Q 003710 96 YLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSL 175 (801)
Q Consensus 96 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 175 (801)
.++..++|.+|.+|++.|++++|+.+|+.|.+.|+.|+..+|..++++|.+.+.+..|.++|..+.+.|..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 45666789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHH
Q 003710 176 IVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGK 255 (801)
Q Consensus 176 i~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 255 (801)
+.+|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+++|++|+..++++.+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 003710 256 EIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNP 335 (801)
Q Consensus 256 ~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p 335 (801)
++|..+++.|+.||..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|.+|.+. |+.|
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~P 286 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL-SVDP 286 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 003710 336 DCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVR 415 (801)
Q Consensus 336 d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 415 (801)
|.+||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|.++|+++||+||.+|++
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc--
Q 003710 416 NGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR-- 493 (801)
Q Consensus 416 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-- 493 (801)
.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..+||+||++|+++|++++|.
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 003710 494 -------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGI 566 (801)
Q Consensus 494 -------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 566 (801)
|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+.+|.+|++.|.++.|.+++..+.+. |+.++.
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~ 524 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDG 524 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccc
Confidence 888999999999999999999999999986 69999999999999999999999999999999876 999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccC-CCCchhHHHHHHHHHHc
Q 003710 567 EHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSA-QDNTGCYVLLSNMYAEA 645 (801)
Q Consensus 567 ~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~y~~~ 645 (801)
.++++|+++|+++|++++|.++|++| +||..+|++++.+|.++|+.++|..+++++.+.. .+|..+|..++.+|++.
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 99999999999999999999999999 8999999999999999999999999999998753 45788899999999999
Q ss_pred CCchHHHHHHHHHH-HCCCccCCcccEEEECCEEEEEecCCCCchhHHHHHHHHHHHHHHHHhcCccccCCccccccchh
Q 003710 646 GRWEDVEQIKAIME-KEGLKKTTGCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMK 724 (801)
Q Consensus 646 g~~~~a~~~~~~m~-~~g~~~~~~~s~~~~~~~~~~~~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~ 724 (801)
|++++|.++|+.|+ +.|+.|+... +. ..+.....-+. +++..+.+++.+..||...+..-+..-
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~-y~-------~lv~~l~r~G~-------~~eA~~~~~~m~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKH-YA-------CVVDLLGRAGK-------LTEAYNFINKMPITPDPAVWGALLNAC 667 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHH-HH-------HHHHHHHhCCC-------HHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 99999999999999 5688765321 00 00000000111 223333334446778765443222110
Q ss_pred hhccccccc---hHHHH-HHHhccCCCCCCcEEEEeccccCCchhhhhhhhccccceEEE-------EeCCCcccccccc
Q 003710 725 NRAKSPHHH---SVRLA-ISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELI-------VRDPKCFHHFRNG 793 (801)
Q Consensus 725 ~~~~~~~~h---se~la-~~~~~~~~~~~~~i~i~kn~r~c~dch~~~k~~s~~~~r~i~-------~rd~~~~h~f~~g 793 (801)
. .... .|+.| ..+.+-...++..+.+.+=.--.++...+.|....+..+.+- |--.+..|-|..|
T Consensus 668 ~----~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~ 743 (857)
T PLN03077 668 R----IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTD 743 (857)
T ss_pred H----HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecC
Confidence 0 0011 12222 234444443444443333334567778888887777666542 2234688999877
Q ss_pred ccCC
Q 003710 794 CCSC 797 (801)
Q Consensus 794 ~csc 797 (801)
.-|.
T Consensus 744 d~~h 747 (857)
T PLN03077 744 DESH 747 (857)
T ss_pred CCCC
Confidence 6554
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.7e-70 Score=632.81 Aligned_cols=516 Identities=16% Similarity=0.226 Sum_probs=473.1
Q ss_pred ChhHHHHHHHHHcCCChHHHHHHHhhCCCCChh-----hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHH
Q 003710 68 NITKTRALQELVSSGSMESACYLFEKMSYLDTY-----IWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIK 142 (801)
Q Consensus 68 ~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 142 (801)
...+..+++.|++.|++++|+++|++|+.++.+ .++.++.+|.+.|..++|+.+|+.|.. ||..+|+.+|.
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~ 445 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMS 445 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHH
Confidence 344448889999999999999999999876554 456678889999999999999999974 99999999999
Q ss_pred HHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCC----CCCcccHHHHHHHHHcCCChhh
Q 003710 143 ACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMP----VRDTVSWNSMIGGYCSVGDGVS 218 (801)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~ 218 (801)
+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 999999999999999999999999999999999999999999999999999998 6899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH--hCCCCchHHHHHHHHHHhcCCChHHHHHHHhhc
Q 003710 219 SLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIK--SGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMI 296 (801)
Q Consensus 219 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m 296 (801)
|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++||++|+++|++++|.++|++|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 689999999999999999999999999999999
Q ss_pred CC----CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch
Q 003710 297 FP----RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNV 372 (801)
Q Consensus 297 ~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 372 (801)
.+ ++.++||++|.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|++++|.++|+.|.+.|+.||.
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 54 57799999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHccCChHHHHHHHhcCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHH
Q 003710 373 ALETALIDMYAGSGALKMTEKLFGSMI----EKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAY 448 (801)
Q Consensus 373 ~~~~~Li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 448 (801)
.+|++||++|+++|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|...|+.||..||+.+|.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999994 6899999999999999999999999999999999999999999999999
Q ss_pred HhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHH----HhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003710 449 AEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMY----AKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREK 524 (801)
Q Consensus 449 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y----~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 524 (801)
++.|+++.|.++|++|.+.|+.||..+|++|+.++ .++++..++ ...|+. .......+..++|+.+|++|++.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~--v~~f~~-g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEP--VVSFDS-GRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhh--hhhhhc-cccccccchHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999874 445554433 344432 22233345567899999999999
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 003710 525 GIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS 594 (801)
Q Consensus 525 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~ 594 (801)
|+.||..||+.+|.+++..+..+.+..+++.|... +..|+..+|++||+++++. .++|..++++|..
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 99999999999998887888888888888877654 6777889999999998542 4789999999964
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.3e-66 Score=599.79 Aligned_cols=512 Identities=17% Similarity=0.219 Sum_probs=461.6
Q ss_pred CCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCC-CCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHH
Q 003710 130 FKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGL-NSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIG 208 (801)
Q Consensus 130 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~ 208 (801)
-.++...|..++..|++.|++++|.++++.|.+.|+ .++..+++.++..|.+.|.+++|.++|+.|..||..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 356777899999999999999999999999999986 5678888899999999999999999999999999999999999
Q ss_pred HHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHH
Q 003710 209 GYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDY 288 (801)
Q Consensus 209 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 288 (801)
+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|++||++|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcC----CCCcccHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCCChhhHHHHHHHHhccCChHHHHHHHHHH
Q 003710 289 AERLFNMIF----PRNIVAWNAMVGGYVVNAHFLESFSCLRKMLED-DNLNPDCITIINLLPSCTKLGALLEGKSIHGYA 363 (801)
Q Consensus 289 A~~lf~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~ 363 (801)
|.++|++|. .||.++||.||.+|++.|++++|.++|.+|... .|+.||.+||+++|.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999993 489999999999999999999999999999762 378999999999999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHh
Q 003710 364 IRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMI----EKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAM 439 (801)
Q Consensus 364 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 439 (801)
.+.|+.|+..+||++|.+|++.|++++|.++|++|. .+|.++|+++|.+|++.|++++|+++|++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999999995 4688999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003710 440 TFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFS 519 (801)
Q Consensus 440 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~ 519 (801)
+|+++|.+|++.|++++|.++|+.|.+.|+.||.. +||+||.+|++.|+.++|+++|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvv----------------------tyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS----------------------TMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH----------------------HHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999888754 55666666666677777799999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH----hcC---------------
Q 003710 520 EMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLG----RIG--------------- 580 (801)
Q Consensus 520 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g--------------- 580 (801)
+|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|++|++++. +++
T Consensus 744 eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~ 822 (1060)
T PLN03218 744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQ 822 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 9999999999999999999999999999999999999876 99999999999998743 222
Q ss_pred ----CHHHHHHHHHhCCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHH-ccCCCCchhHHHHHHHHHHcCCc-hHH
Q 003710 581 ----NLDQAKRFIEEMPS---APTARIWGALLTASRKNNDIVSAEFAARHVL-SSAQDNTGCYVLLSNMYAEAGRW-EDV 651 (801)
Q Consensus 581 ----~~~eA~~~~~~m~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~y~~~g~~-~~a 651 (801)
..++|..+|++|.. .||..+|+.++.++...++.+.+..+++.+. .-.+++..+|..|++.+ |++ ++|
T Consensus 823 ~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A 899 (1060)
T PLN03218 823 IENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRA 899 (1060)
T ss_pred cccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHH
Confidence 24679999999975 5999999999987778888888888887654 34567788999999987 443 589
Q ss_pred HHHHHHHHHCCCccCC
Q 003710 652 EQIKAIMEKEGLKKTT 667 (801)
Q Consensus 652 ~~~~~~m~~~g~~~~~ 667 (801)
..++++|...|+.|+.
T Consensus 900 ~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 900 FSLLEEAASLGVVPSV 915 (1060)
T ss_pred HHHHHHHHHcCCCCCc
Confidence 9999999999998764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.4e-62 Score=564.69 Aligned_cols=479 Identities=20% Similarity=0.308 Sum_probs=436.5
Q ss_pred CCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHH
Q 003710 197 VRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCG-LRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTS 275 (801)
Q Consensus 197 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~ 275 (801)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|++.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHH
Q 003710 276 LVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLE 355 (801)
Q Consensus 276 li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~ 355 (801)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|.++.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHHH
Confidence 9999999999999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Q 003710 356 GKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLK 435 (801)
Q Consensus 356 a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 435 (801)
+.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHH
Q 003710 436 PDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISI 515 (801)
Q Consensus 436 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~ 515 (801)
||..||++++.+|++.|+++.|.++|+.|.+.|+.||..+||+||++|+|+|++++| .
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A----------------------~ 380 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA----------------------R 380 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH----------------------H
Confidence 999999999999999999999999999999999999999999999999998888877 8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 003710 516 QLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS- 594 (801)
Q Consensus 516 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~- 594 (801)
++|++|. +||.+||++++.+|++.|+.++|.++|++|.+. |+.||..+|++++.+|.+.|.+++|.++|+.|..
T Consensus 381 ~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 381 NVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 9999995 589999999999999999999999999999976 9999999999999999999999999999999953
Q ss_pred ---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCccCCcccE
Q 003710 595 ---APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSM 671 (801)
Q Consensus 595 ---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 671 (801)
.|+..+|+.++.++.+.|++++|.++++++- ..++..+|..|+.+|...|+++.|.++++.+.+.+. ....++
T Consensus 456 ~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p--~~~~~y 531 (697)
T PLN03081 456 HRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP--EKLNNY 531 (697)
T ss_pred cCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC--CCCcch
Confidence 5999999999999999999999999987642 234677899999999999999999999999865432 211111
Q ss_pred EEECCEEEEEecCCCCchhHHHHHHHHHHHHHHHHhcCccccCCccc
Q 003710 672 FEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFS 718 (801)
Q Consensus 672 ~~~~~~~~~~~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~ 718 (801)
+.+ +.......+. +...++.+.|++.|+.+.....+
T Consensus 532 ~~L-------~~~y~~~G~~----~~A~~v~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 532 VVL-------LNLYNSSGRQ----AEAAKVVETLKRKGLSMHPACTW 567 (697)
T ss_pred HHH-------HHHHHhCCCH----HHHHHHHHHHHHcCCccCCCeeE
Confidence 110 0011112222 24467889999999986555433
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.7e-31 Score=321.39 Aligned_cols=572 Identities=13% Similarity=0.059 Sum_probs=289.2
Q ss_pred HHHcCCChHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHH
Q 003710 77 ELVSSGSMESACYLFEKMSYL---DTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEG 153 (801)
Q Consensus 77 ~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 153 (801)
.+...|++++|...|+++... +...+..+...+...|++++|...|.++.+.. +.+...+..+...+...|+.++|
T Consensus 270 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A 348 (899)
T TIGR02917 270 VDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEA 348 (899)
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHH
Confidence 334556666666666554321 12223333444555566666666666555432 22333444455555556666666
Q ss_pred HHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCC---CCcccHHHHHHHHHcCCChhhHHHHHHHHHhCC
Q 003710 154 EKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPV---RDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCG 230 (801)
Q Consensus 154 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 230 (801)
.+.+..+.+.. ..+...+..+...|.+.|++++|.++|+++.. .+...|..+...+...|++++|++.|+++.+..
T Consensus 349 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 427 (899)
T TIGR02917 349 IATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD 427 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC
Confidence 66665555443 23444555555566666666666666655431 233445555555555566666666555554432
Q ss_pred CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC---CCcccHHHH
Q 003710 231 LRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP---RNIVAWNAM 307 (801)
Q Consensus 231 ~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~l 307 (801)
... ......++..+.+.|+.++|.+++..+.+.. +.+..++..+...|.+.|++++|.+.|+++.. .+...+..+
T Consensus 428 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 505 (899)
T TIGR02917 428 PEL-GRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANL 505 (899)
T ss_pred Ccc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 111 1223334444555555555555555554432 23444555555555555555555555555421 233444455
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC
Q 003710 308 VGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGA 387 (801)
Q Consensus 308 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 387 (801)
...+...|++++|.+.|+++... .+.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|+
T Consensus 506 a~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCC
Confidence 55555555555555555555543 12233444455555555555555555555554443 2234444555555555555
Q ss_pred hHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHH
Q 003710 388 LKMTEKLFGSMIE---KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLI 464 (801)
Q Consensus 388 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 464 (801)
.++|..+++.+.. .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|..++..+
T Consensus 583 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555431 234455555555555555555555555554421 122334444445555555555555555555
Q ss_pred HHhCCCCchHHHHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003710 465 TKLGLVSNIYISNSIVYMYAKCGDLQTAR------------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNEST 532 (801)
Q Consensus 465 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 532 (801)
.+.. +.+...+..++..+.+.|++++|. +...|..+...+...|++++|++.|+++... .|+..+
T Consensus 662 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 738 (899)
T TIGR02917 662 LELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQN 738 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchH
Confidence 5432 233445555555555555555554 2334445555555555555555555555552 244444
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHh
Q 003710 533 FVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRK 610 (801)
Q Consensus 533 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~ 610 (801)
+..+..++.+.|++++|.+.++.+.+. ...+...+..+...|.+.|++++|.+.++++.. +++..++..+...+..
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445555555555555555555555432 112244555555555555555555555555432 2234445555555555
Q ss_pred cCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710 611 NNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG 662 (801)
Q Consensus 611 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 662 (801)
.|+ ..|+..++++++..|+++..+..++.+|...|++++|.++++++.+.+
T Consensus 817 ~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 817 LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 555 445555555555555555555555555555555555555555555443
No 8
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=4.1e-37 Score=261.89 Aligned_cols=106 Identities=45% Similarity=0.742 Sum_probs=97.0
Q ss_pred cccEEEECCEEEEEecCCCCchhHHHHHHHHHHHHHHHHhcCccccCCccccccchhhh--------ccccccchHHHHH
Q 003710 668 GCSMFEKNGETHRFINQDRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFSPAHLMKNR--------AKSPHHHSVRLAI 739 (801)
Q Consensus 668 ~~s~~~~~~~~~~~~~~~~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~hse~la~ 739 (801)
||||+++ |.|++||.+||+. ++..++...||.|++..+.|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7999877 9999999999988 455677888999999999998877655 6688999999999
Q ss_pred HHhccCCCCCCcEEEEecc-ccCCchhhhhhhhccccceEEEEeCCCcccccc
Q 003710 740 SFGLISTSVGNPVLVRNNT-RICEDCHSAVKKISEITKRELIVRDPKCFHHFR 791 (801)
Q Consensus 740 ~~~~~~~~~~~~i~i~kn~-r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~ 791 (801)
||||+++ ||+||+ |||+|||+++|+||+++||+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-30 Score=315.88 Aligned_cols=576 Identities=13% Similarity=0.035 Sum_probs=457.7
Q ss_pred HHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCC-------------------
Q 003710 73 RALQELVSSGSMESACYLFEKMS---YLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGF------------------- 130 (801)
Q Consensus 73 ~l~~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~------------------- 130 (801)
.+...+...|+++.|...|++.. ..+...|..++..+...|++++|...++.+.+...
T Consensus 198 ~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (899)
T TIGR02917 198 LKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNY 277 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCH
Confidence 55555666666666666666543 22444555555666666666666665555544321
Q ss_pred -------------CCCc-ccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCC
Q 003710 131 -------------KADY-FTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMP 196 (801)
Q Consensus 131 -------------~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 196 (801)
.|+. ..+..+...+...|+++.|...+..+.+.. +.+...+..+...+.+.|++++|...++.+.
T Consensus 278 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 356 (899)
T TIGR02917 278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPAL 356 (899)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1111 112222333445666677777776666654 2345566777788888888888888887765
Q ss_pred C---CCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHH
Q 003710 197 V---RDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQ 273 (801)
Q Consensus 197 ~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~ 273 (801)
. .+...|+.+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|+.++|.+.+..+.+.... +....
T Consensus 357 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~ 434 (899)
T TIGR02917 357 GLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRAD 434 (899)
T ss_pred hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhH
Confidence 2 355678888888999999999999998887643 124455666667778888999999999888876532 34456
Q ss_pred HHHHHHHhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhcc
Q 003710 274 TSLVDMYGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKL 350 (801)
Q Consensus 274 ~~li~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~ 350 (801)
..++..|.+.|+.++|.++++.+.. .+..+|+.+...|...|++++|...|.++.+. .+.+...+..+...+...
T Consensus 435 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI--EPDFFPAAANLARIDIQE 512 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHC
Confidence 6678889999999999999998843 46778999999999999999999999999864 233445677788888999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003710 351 GALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIE---KNLVSWNAMIAAYVRNGQNREAMELFQ 427 (801)
Q Consensus 351 g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 427 (801)
|++++|.+.++.+.+.+ +.+..++..+...|.+.|+.++|...|+++.. .+...+..++..|...|++++|+.+++
T Consensus 513 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999998865 45778899999999999999999999998843 356778889999999999999999999
Q ss_pred HHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc------------hH
Q 003710 428 DLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR------------DV 495 (801)
Q Consensus 428 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~------------d~ 495 (801)
++... .+.+..++..+..++...|++++|...++.+.+.. +.+...+..+...|.+.|+.++|. +.
T Consensus 592 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 669 (899)
T TIGR02917 592 EAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT 669 (899)
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence 99864 34567788999999999999999999999998765 456778889999999999999997 56
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 003710 496 VSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDL 575 (801)
Q Consensus 496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 575 (801)
.+|..++..+...|++++|+++++.+.+.+ .++...+..+...+...|++++|.+.|+.+.. ..|+...+..++.+
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~ 745 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRA 745 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHH
Confidence 789999999999999999999999999865 45667788888899999999999999999875 35777888899999
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHH
Q 003710 576 LGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQ 653 (801)
Q Consensus 576 ~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 653 (801)
+.+.|++++|.+.++++.. ..+...+..+...+...|+.+.|...++++++..|+++.++..++.+|...|+ ++|..
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 9999999999999988754 34567788888889999999999999999999999999999999999999999 88999
Q ss_pred HHHHHHHC
Q 003710 654 IKAIMEKE 661 (801)
Q Consensus 654 ~~~~m~~~ 661 (801)
+++++.+.
T Consensus 825 ~~~~~~~~ 832 (899)
T TIGR02917 825 YAEKALKL 832 (899)
T ss_pred HHHHHHhh
Confidence 99988775
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=2.8e-22 Score=244.40 Aligned_cols=583 Identities=12% Similarity=0.052 Sum_probs=423.0
Q ss_pred ccCCCCChhHH-HHHHHHHcCCChHHHHHHHhhCCC--CCh-hhH----------------HHHHHHHHcCCChhHHHHH
Q 003710 62 KSIGPRNITKT-RALQELVSSGSMESACYLFEKMSY--LDT-YIW----------------NVVIRGFVDNGLFQEAVEF 121 (801)
Q Consensus 62 ~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~f~~~~~--~~~-~~~----------------~~li~~~~~~~~~~~A~~~ 121 (801)
..+.|.++-+. .+...+.+.|+.++|.+.+++..+ |+. ..+ -.+.+.+...|++++|++.
T Consensus 55 ~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~ 134 (1157)
T PRK11447 55 ELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALAS 134 (1157)
T ss_pred HccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHH
Confidence 34567776666 788888899999999999988753 322 111 2234467888999999999
Q ss_pred HHHHHHCCCCCCccc-HHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCc
Q 003710 122 HHRMVCEGFKADYFT-YPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDT 200 (801)
Q Consensus 122 ~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~ 200 (801)
|+++.+.. +|+... ...........++.++|...++.+++.. +.+...+..+...+...|+.++|.+.|+++.....
T Consensus 135 ~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~ 212 (1157)
T PRK11447 135 YDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPA 212 (1157)
T ss_pred HHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Confidence 99988643 333321 1111122234588999999999998875 33566788888899999999999999988753211
Q ss_pred ------ccH-----------------HHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHH
Q 003710 201 ------VSW-----------------NSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEI 257 (801)
Q Consensus 201 ------~~~-----------------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l 257 (801)
..| ...+..+-.....+.|...+.++......|+... ...-..+...|++++|...
T Consensus 213 ~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~ 291 (1157)
T PRK11447 213 GRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPE 291 (1157)
T ss_pred chHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHH
Confidence 111 1111112222223445555555443322333221 1223455678999999999
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC--CCc---ccHHHH------------HHHHHhCCChhHH
Q 003710 258 HCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP--RNI---VAWNAM------------VGGYVVNAHFLES 320 (801)
Q Consensus 258 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~--~~~---~~~~~l------------i~~~~~~g~~~~A 320 (801)
+++.++.. +.+..++..|...|.+.|+.++|...|++..+ |+. ..|..+ ...+.+.|++++|
T Consensus 292 l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA 370 (1157)
T PRK11447 292 LQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQA 370 (1157)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHH
Confidence 99999874 33678888999999999999999999998744 322 223322 3356789999999
Q ss_pred HHHHHHHHhCCCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCC
Q 003710 321 FSCLRKMLEDDNLNP-DCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMI 399 (801)
Q Consensus 321 ~~l~~~m~~~~g~~p-d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~ 399 (801)
...|++.... .| +...+..+-..+...|+.++|.+.++.+++.. +.+...+..+...|. .++.++|..+++.+.
T Consensus 371 ~~~~~~Al~~---~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 371 ERLYQQARQV---DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLS 445 (1157)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCC
Confidence 9999999865 34 44566677888899999999999999999864 334566677777775 467899999998775
Q ss_pred CCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCC-HhhHHHHHHHHHhhcChhhHHHHHHHHHH
Q 003710 400 EKN------------LVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPD-AMTFASILPAYAEIATLSDSMQIHSLITK 466 (801)
Q Consensus 400 ~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 466 (801)
... ...+..+...+...|++++|++.|++.++. .|+ ...+..+...+.+.|+.++|...++.+++
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 432 123445667788899999999999999874 565 44566777889999999999999999987
Q ss_pred hCCCCchHHHHHHHHHHHhcCCccccchHH----------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003710 467 LGLVSNIYISNSIVYMYAKCGDLQTARDVV----------------------SWNVIIMAYAIHGLGKISIQLFSEMREK 524 (801)
Q Consensus 467 ~g~~~~~~~~~~li~~y~~~g~~~~A~d~~----------------------~~~~li~~~~~~g~~~~A~~l~~~m~~~ 524 (801)
.. +.+...+.++...+.+.|+.++|.... .+..+...+...|+.++|+++++.
T Consensus 524 ~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---- 598 (1157)
T PRK11447 524 QK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---- 598 (1157)
T ss_pred cC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----
Confidence 54 334445555555667788877775211 122456678899999999999872
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-cchH
Q 003710 525 GIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APT-ARIW 601 (801)
Q Consensus 525 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~ 601 (801)
.+++...+..+...+.+.|++++|+..|+...+ ..|+ ...+..++.+|...|++++|++.++.... .|+ ...+
T Consensus 599 -~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~ 674 (1157)
T PRK11447 599 -QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQ 674 (1157)
T ss_pred -CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHH
Confidence 234555677788889999999999999999885 3566 88899999999999999999999998764 343 4567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCc------hhHHHHHHHHHHcCCchHHHHHHHHHHH-CCCc
Q 003710 602 GALLTASRKNNDIVSAEFAARHVLSSAQDNT------GCYVLLSNMYAEAGRWEDVEQIKAIMEK-EGLK 664 (801)
Q Consensus 602 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~y~~~g~~~~a~~~~~~m~~-~g~~ 664 (801)
..+..++...|+.++|...++++++..|+++ ..+..++.++...|++++|...++.... .|+.
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 7778888899999999999999998876544 3566779999999999999999887753 3453
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=6e-22 Score=241.53 Aligned_cols=577 Identities=11% Similarity=0.042 Sum_probs=424.2
Q ss_pred HHHHHHHcCCChHHHHHHHhhCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccH------------
Q 003710 73 RALQELVSSGSMESACYLFEKMS---YLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTY------------ 137 (801)
Q Consensus 73 ~l~~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~------------ 137 (801)
..++.....++.+.|.+.++++. ..|+..+..++..+.+.|+.++|.+.++++.+.. |+...+
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCC
Confidence 55667778899999999999864 3467788899999999999999999999998754 544333
Q ss_pred -----HHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHH-HHHHHhcCCchHHHHhhccCCC--C-CcccHHHHHH
Q 003710 138 -----PFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSL-IVMYMKLGCVECAERMFDEMPV--R-DTVSWNSMIG 208 (801)
Q Consensus 138 -----~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~ 208 (801)
....+.+...|+.++|.+.++.+.+.. +++....... .......|+.++|++.|+++.. | +...+..+..
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 222345778899999999999998764 3332211111 2222345999999999999873 3 5567888999
Q ss_pred HHHcCCChhhHHHHHHHHHhCCCC----------------CChh---hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 003710 209 GYCSVGDGVSSLVFFKEMQNCGLR----------------YDRF---SLISALGAISIEGCLKIGKEIHCQVIKSGLEMD 269 (801)
Q Consensus 209 ~~~~~g~~~~A~~l~~~m~~~g~~----------------p~~~---t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~ 269 (801)
.+...|+.++|+..|+++...... ++.. .+...+..+-.....+.+...+....+....|+
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 999999999999999998653210 0000 111111112222234445555555444433333
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhH------
Q 003710 270 VMVQTSLVDMYGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITI------ 340 (801)
Q Consensus 270 ~~~~~~li~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~------ 340 (801)
.. ...+...+...|++++|...|++... .+...+..+...|.+.|++++|+..|++..+...-.++...+
T Consensus 270 ~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 270 FR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred hH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 22 22345667889999999999998743 367788999999999999999999999988651111111111
Q ss_pred ------HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC---CCHHHHHHHHH
Q 003710 341 ------INLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIE---KNLVSWNAMIA 411 (801)
Q Consensus 341 ------~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~ 411 (801)
...-..+.+.|++++|...++.+++.. +.+...+..|...|.+.|++++|++.|++..+ .+...+..+..
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 122345678899999999999999874 34567778899999999999999999998753 34556777777
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCC--------CHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003710 412 AYVRNGQNREAMELFQDLWSEPLKP--------DAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMY 483 (801)
Q Consensus 412 ~~~~~g~~~~A~~l~~~m~~~g~~p--------d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 483 (801)
.|. .++.++|+.+++.+....... ....+..+...+...|++++|.+.++.+++.. +.+..++..+...|
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 774 467899999988764321100 01123445566778999999999999999865 44567788899999
Q ss_pred HhcCCccccc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHhc
Q 003710 484 AKCGDLQTAR------------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES---------TFVSLLSSCSI 542 (801)
Q Consensus 484 ~~~g~~~~A~------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a~~~ 542 (801)
.+.|++++|. +...+..+...+...|+.++|+..++++......++.. .+..+...+..
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999997 44455556666778899999999998865433222221 23345667888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCHHHHHHH
Q 003710 543 SGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFA 620 (801)
Q Consensus 543 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~ 620 (801)
.|+.++|..+++. ..++...+..+.+.|.+.|++++|++.+++... .| +...+..+...+...|+.++|+..
T Consensus 586 ~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 586 SGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999872 123466778899999999999999999998764 34 567889999999999999999999
Q ss_pred HHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710 621 ARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG 662 (801)
Q Consensus 621 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 662 (801)
++++++..|++...+..++.+|...|++++|.++++.+....
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999999999999999999999999999999999999987754
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.8e-18 Score=201.41 Aligned_cols=206 Identities=8% Similarity=-0.067 Sum_probs=153.2
Q ss_pred HcCCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHH
Q 003710 79 VSSGSMESACYLFEKMSY---LDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEK 155 (801)
Q Consensus 79 ~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 155 (801)
...|++++|...|+...+ .+..++..+.+.|.+.|++++|+..+++..+. .|+...|..++..+ ++..+|..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 345999999999998753 34667899999999999999999999999875 46555555555333 88889999
Q ss_pred HHHHHHHhCCCCchhhHhHHHHH--------HHhcCCchHHHHhhccCCCCC--ccc-HHHHHHHHHcCCChhhHHHHHH
Q 003710 156 VHGSLFKSGLNSDVYVCNSLIVM--------YMKLGCVECAERMFDEMPVRD--TVS-WNSMIGGYCSVGDGVSSLVFFK 224 (801)
Q Consensus 156 ~~~~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~f~~m~~~d--~~~-~~~li~~~~~~g~~~~A~~l~~ 224 (801)
+++.+++.. +.+..++..+... |.+.+...++++ .+...++ ... .-.+...|.+.|++++|++++.
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999999886 3345555555555 888877777777 3333343 333 3444899999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHhc-cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC
Q 003710 225 EMQNCGLRYDRFSLISALGAISI-EGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP 298 (801)
Q Consensus 225 ~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~ 298 (801)
++.+.+... ..-...+-.++.. .++ +.+..++.. .+..|..+...+.+.|.+.|+.++|.++++++..
T Consensus 207 ~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 207 EARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 999986433 3324444456665 355 667666443 3446888999999999999999999999998843
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=4.2e-17 Score=190.06 Aligned_cols=576 Identities=12% Similarity=0.058 Sum_probs=354.5
Q ss_pred cCCCCChhHH-HHHHHHHcCCChHHHHHHHhhCCC--CChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHH
Q 003710 63 SIGPRNITKT-RALQELVSSGSMESACYLFEKMSY--LDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPF 139 (801)
Q Consensus 63 ~~~~~~~~~~-~l~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 139 (801)
...|.+..+. .|...|.+.|++++|+..+++... |+-.-|..++..+ +++.+|..+|+++.... +-+..++..
T Consensus 72 ~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~ 147 (987)
T PRK09782 72 QQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTL 147 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHH
Confidence 4456666666 888999999999999999988754 3223333333332 77888888888887643 112222322
Q ss_pred HHHHH-----hcCCChhHHHHHHHHHHHhCCCCchhhHhHH-HHHHHhcCCchHHHHhhccCCCCC---cccHHHHHHHH
Q 003710 140 VIKAC-----AGLLYLSEGEKVHGSLFKSGLNSDVYVCNSL-IVMYMKLGCVECAERMFDEMPVRD---TVSWNSMIGGY 210 (801)
Q Consensus 140 ll~~~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~y~~~g~~~~A~~~f~~m~~~d---~~~~~~li~~~ 210 (801)
+.... .+-...+++.+.++ .......|+..+...+ ...|.+.|++++|.+++.++.+.+ ..-+..|-..|
T Consensus 148 la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay 226 (987)
T PRK09782 148 RCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVL 226 (987)
T ss_pred HHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 22220 01112233333333 2222222233333333 555555555555555555544221 11133333344
Q ss_pred Hc-CCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCC-----------------------
Q 003710 211 CS-VGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGL----------------------- 266 (801)
Q Consensus 211 ~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~----------------------- 266 (801)
.+ .++ +++..+++. .++-|......+...+.+.|+.++|.+++..+...-.
T Consensus 227 ~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~ 301 (987)
T PRK09782 227 LAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQAL 301 (987)
T ss_pred HHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhc
Confidence 44 233 444444332 1223444444555555555555555544444322110
Q ss_pred -------CCc-hHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-Ch
Q 003710 267 -------EMD-VMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNP-DC 337 (801)
Q Consensus 267 -------~~~-~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~ 337 (801)
.++ ....-.+++.+.+.++++.+.++.+ ....+. ..-.-..+....+...++...++.|.+. .| +.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~---~~~~~ 376 (987)
T PRK09782 302 ANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-MLEERYAVSVATRNKAEALRLARLLYQQ---EPANL 376 (987)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-HHHHHHhhccccCchhHHHHHHHHHHhc---CCCCH
Confidence 011 1122334677778888887777643 222222 1111112222346667777777777654 22 22
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHh-C-CCCchhHHHHHHHHHHccCC---hHHHHHH------------------
Q 003710 338 ITIINLLPSCTKLGALLEGKSIHGYAIRK-G-FLPNVALETALIDMYAGSGA---LKMTEKL------------------ 394 (801)
Q Consensus 338 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g-~~~~~~~~~~Li~~y~k~g~---~~~A~~~------------------ 394 (801)
...-.+---..+.|+.++|.+++...... + -..+....+-|+..|.+.+. ..++..+
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 456 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPG 456 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhh
Confidence 22223333345678888888888877662 1 12345566678888887766 3333222
Q ss_pred -------HhcCC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHH
Q 003710 395 -------FGSMI---EK--NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHS 462 (801)
Q Consensus 395 -------f~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 462 (801)
+.... .. +...|..+..++.. ++.++|+..|.+.... .|+......+..++...|++++|...++
T Consensus 457 ~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~r 533 (987)
T PRK09782 457 IADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQ 533 (987)
T ss_pred hhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 11111 12 45566777766666 7888888877777653 4665544444455567889999998888
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhcCCccccchH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003710 463 LITKLGLVSNIYISNSIVYMYAKCGDLQTARDV------------VSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNE 530 (801)
Q Consensus 463 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 530 (801)
.+... +|+...+..+...+.+.|+.++|... ..+..+.......|++++|+..|++..+ +.|+.
T Consensus 534 ka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~ 609 (987)
T PRK09782 534 KISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSA 609 (987)
T ss_pred HHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCH
Confidence 87554 34444455667778888888887611 1122222333445999999999999988 56888
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHH
Q 003710 531 STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTA 607 (801)
Q Consensus 531 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~ 607 (801)
..+..+...+.+.|++++|...|+.... +.|+ ...+..+..++...|++++|++.+++... .| +...+..+..+
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~a 686 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYV 686 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8888999999999999999999999874 5676 78888999999999999999999988754 34 46788899999
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 003710 608 SRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGL 663 (801)
Q Consensus 608 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 663 (801)
+...|+.+.|+..++++++++|++..+....+++.....+++.|.+-+++.-.-++
T Consensus 687 l~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 687 NQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999999887776655444
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=6.9e-18 Score=173.75 Aligned_cols=371 Identities=16% Similarity=0.170 Sum_probs=270.1
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHH-
Q 003710 270 VMVQTSLVDMYGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLP- 345 (801)
Q Consensus 270 ~~~~~~li~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~- 345 (801)
..+|+.+.+.+-..|++++|.++++.+.+ ..+..|..+..++...|+.+.|.+.|.+.. .+.|+.+-..+-+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~al---qlnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEAL---QLNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHH---hcCcchhhhhcchhH
Confidence 45666667777777777777777776643 345667777777777777777777777666 34565554333222
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCH---HHHHHHHHHHHHcCCHHHH
Q 003710 346 SCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNL---VSWNAMIAAYVRNGQNREA 422 (801)
Q Consensus 346 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A 422 (801)
..-..|++++|..-+...++..- .=..+|+.|...+-..|++..|..-|++...-|+ ..|-.|-..|...+.+++|
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 22235667777776666665431 1244566666666677777777777777654332 4566666677777777777
Q ss_pred HHHHHHHhCCCCCCC-HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc--------
Q 003710 423 MELFQDLWSEPLKPD-AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR-------- 493 (801)
Q Consensus 423 ~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-------- 493 (801)
+..|.+... ..|+ .+.+..+-..|...|.++.|...++..++.. +.-...|+.|..++...|++.+|.
T Consensus 272 vs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 272 VSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 777776654 3454 3445555555666777777777777776543 223456777777777777777776
Q ss_pred ----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hH
Q 003710 494 ----DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IE 567 (801)
Q Consensus 494 ----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~ 567 (801)
...+.+.|...|...|+.++|..+|....+ +.|.-. .++.|...+-+.|++++|+..+++.. .|.|+ ..
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAd 423 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFAD 423 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHH
Confidence 344678888999999999999999999988 777754 68899999999999999999999887 68999 89
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHc
Q 003710 568 HYGCIIDLLGRIGNLDQAKRFIEEMPS-APT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEA 645 (801)
Q Consensus 568 ~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 645 (801)
.|+.|...|-..|+.+.|.+.+.+... .|. ....+.|.+.+...|+..+|.+.++.++++.|+-+.+|-.|....---
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence 999999999999999999999988653 454 467788999999999999999999999999999999998888777666
Q ss_pred CCchHHH
Q 003710 646 GRWEDVE 652 (801)
Q Consensus 646 g~~~~a~ 652 (801)
.+|.+-.
T Consensus 504 cdw~D~d 510 (966)
T KOG4626|consen 504 CDWTDYD 510 (966)
T ss_pred hcccchH
Confidence 7776633
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.81 E-value=1.4e-17 Score=171.58 Aligned_cols=370 Identities=15% Similarity=0.189 Sum_probs=302.2
Q ss_pred HHHhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCh-hhHHHHHHHHhccCCh
Q 003710 278 DMYGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDC-ITIINLLPSCTKLGAL 353 (801)
Q Consensus 278 ~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~g~~ 353 (801)
..+....+.+....--..... .-..+|..+...+-..|+.++|+.+|+.|.+. .|+. ..|..+-.++...|+.
T Consensus 90 ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~ 166 (966)
T KOG4626|consen 90 AIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDL 166 (966)
T ss_pred hhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCC
Confidence 344555555543332222222 23467888999999999999999999999864 6654 4788899999999999
Q ss_pred HHHHHHHHHHHHhCCCCchh-HHHHHHHHHHccCChHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003710 354 LEGKSIHGYAIRKGFLPNVA-LETALIDMYAGSGALKMTEKLFGSMIEKN---LVSWNAMIAAYVRNGQNREAMELFQDL 429 (801)
Q Consensus 354 ~~a~~~~~~~~~~g~~~~~~-~~~~Li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m 429 (801)
+.|.+.+.+.++.. |+.. +.+-+-...-..|++++|...+.+..+.+ .+.|+.|...+-..|+..+|+..|++.
T Consensus 167 ~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eA 244 (966)
T KOG4626|consen 167 ELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEA 244 (966)
T ss_pred cccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHh
Confidence 99999999888753 4433 33344555566899999998887765433 478999999999999999999999999
Q ss_pred hCCCCCCC-HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccch------------HH
Q 003710 430 WSEPLKPD-AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARD------------VV 496 (801)
Q Consensus 430 ~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d------------~~ 496 (801)
.. +.|+ ...|..|-..+...+.++.|...+..+.... +....++..+.-.|-..|.++.|.| ..
T Consensus 245 vk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~ 321 (966)
T KOG4626|consen 245 VK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD 321 (966)
T ss_pred hc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchH
Confidence 76 5676 3467778888888888888888887776543 3346677778888889999999872 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 003710 497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNE-STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIID 574 (801)
Q Consensus 497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 574 (801)
.||.|..++-..|+..+|.+.|.+.+. +.|+. ...+.|...+...|++++|..+|.... .+.|. ....+.|..
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~ 396 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLAS 396 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHH
Confidence 799999999999999999999999988 56764 478899999999999999999999876 56788 788999999
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHH
Q 003710 575 LLGRIGNLDQAKRFIEEMP-SAPT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVE 652 (801)
Q Consensus 575 ~~~~~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 652 (801)
.|-.+|++++|+.-+++.. .+|+ ...++.+.+.+...|+++.|.+.+.+++..+|.-+.++..|+.+|-..|+..+|.
T Consensus 397 i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 397 IYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred HHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHH
Confidence 9999999999999998865 3676 5678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 003710 653 QIKAIMEK 660 (801)
Q Consensus 653 ~~~~~m~~ 660 (801)
.-++...+
T Consensus 477 ~sY~~aLk 484 (966)
T KOG4626|consen 477 QSYRTALK 484 (966)
T ss_pred HHHHHHHc
Confidence 99888765
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=5.2e-17 Score=176.74 Aligned_cols=165 Identities=14% Similarity=0.122 Sum_probs=130.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHH
Q 003710 498 WNVIIMAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG--IEHYGCIID 574 (801)
Q Consensus 498 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~ 574 (801)
|..++..+...|+.++|++.|+++.+. .|+ ...+..+...+.+.|++++|.++|+.+.+. .|+ ...+..++.
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~ 257 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLME 257 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHH
Confidence 445566677778888888888888874 344 446777778888899999999999988753 344 456788889
Q ss_pred HHHhcCCHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHH---cCCchH
Q 003710 575 LLGRIGNLDQAKRFIEEMPS-APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAE---AGRWED 650 (801)
Q Consensus 575 ~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~---~g~~~~ 650 (801)
+|.+.|++++|.+.++++.. .|+...+..+...+...|+.+.|...++++++..|++.. +..+...+.. .|+.++
T Consensus 258 ~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~ 336 (389)
T PRK11788 258 CYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKE 336 (389)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchh
Confidence 99999999999999888754 577777788888899999999999999999999988764 4444545443 569999
Q ss_pred HHHHHHHHHHCCCccCCc
Q 003710 651 VEQIKAIMEKEGLKKTTG 668 (801)
Q Consensus 651 a~~~~~~m~~~g~~~~~~ 668 (801)
+..+++.|.+++++++|.
T Consensus 337 a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 337 SLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999999999887
No 17
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.3e-14 Score=143.80 Aligned_cols=406 Identities=14% Similarity=0.144 Sum_probs=260.9
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhc--CCChh-HHHHHHHHHHHhCCCCchhhHhHH
Q 003710 99 TYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAG--LLYLS-EGEKVHGSLFKSGLNSDVYVCNSL 175 (801)
Q Consensus 99 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~-~a~~~~~~~~~~g~~~~~~~~~~l 175 (801)
+.+=|.|+.. ...|...++.-+|+.|.+.|+..+...-..+++..+- ..++. .-.+-|-.|.+.|- .+..+
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~s---- 189 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSS---- 189 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-ccccc----
Confidence 3455666654 4578899999999999999987777666666554332 22222 22334445555552 23333
Q ss_pred HHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHH
Q 003710 176 IVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGK 255 (801)
Q Consensus 176 i~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 255 (801)
.|.|.+.+ ++-+...++..+|..||.|+|+--..+.|.+++++-.....+.+..+|+.+|.+-+- ..++
T Consensus 190 ----WK~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K 258 (625)
T KOG4422|consen 190 ----WKSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK 258 (625)
T ss_pred ----cccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence 35666555 444555677889999999999999999999999999999899999999999987653 3448
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 003710 256 EIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNP 335 (801)
Q Consensus 256 ~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p 335 (801)
.+..+|+...+.||..|+|+++...++.|+++.|++.+ ++++.+|.+- |+.|
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aa---------------------------lqil~EmKei-GVeP 310 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAA---------------------------LQILGEMKEI-GVEP 310 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHH---------------------------HHHHHHHHHh-CCCc
Confidence 99999999999999999999999999999998877653 3334444444 4444
Q ss_pred ChhhHHHHHHHHhccCChHH-HHHHHHHHHH----hCCCC----chhHHHHHHHHHHccCChHHHHHHHhcCCC------
Q 003710 336 DCITIINLLPSCTKLGALLE-GKSIHGYAIR----KGFLP----NVALETALIDMYAGSGALKMTEKLFGSMIE------ 400 (801)
Q Consensus 336 d~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~----~g~~~----~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~------ 400 (801)
...+|..+|..+++.++..+ +..+...+.. ..+.| |...+...++.+.+..+.+-|.++-.-...
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 44444444444444433322 2222222211 11111 223333334444444444444443322211
Q ss_pred --C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHH
Q 003710 401 --K---NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYI 475 (801)
Q Consensus 401 --~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 475 (801)
+ ..+-|..+....|+....+.-+..|+.|.-.-+-|+..+...+++|....+.++-..+++..++..|..-+...
T Consensus 391 ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 391 IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 1 12345667778888889999999999999888899999999999999999999999999999998875433222
Q ss_pred HHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHH-
Q 003710 476 SNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES---TFVSLLSSCSISGMVDEGWN- 551 (801)
Q Consensus 476 ~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~- 551 (801)
. .+++..|......|+.. -+..+..-|+. ++.++.+
T Consensus 471 ~--------------------------------------eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~ 510 (625)
T KOG4422|consen 471 R--------------------------------------EEILMLLARDKLHPLTPEREQLQVAFAKCAA--DIKEAYES 510 (625)
T ss_pred H--------------------------------------HHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHHHHHHh
Confidence 1 34555555544444423 33333332221 2222221
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003710 552 YFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEM 592 (801)
Q Consensus 552 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m 592 (801)
.-.+|. ...-.....++..-++.|.|+.++|.+++.-.
T Consensus 511 ~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~ 548 (625)
T KOG4422|consen 511 QPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLF 548 (625)
T ss_pred hHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 222232 22333556778888888888888888887665
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.78 E-value=1.2e-16 Score=173.83 Aligned_cols=299 Identities=15% Similarity=0.133 Sum_probs=188.4
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCc---hhhHhHHHHHHHhc
Q 003710 106 IRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSD---VYVCNSLIVMYMKL 182 (801)
Q Consensus 106 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~ 182 (801)
...+...|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334556788888888888888753 23444677777777788888888888877776532221 23456666677777
Q ss_pred CCchHHHHhhccCCC---CCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 003710 183 GCVECAERMFDEMPV---RDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHC 259 (801)
Q Consensus 183 g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~ 259 (801)
|++++|.++|+++.. .+..+++.++..+.+.|++++|++.|+.+.+.+..++...
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 777777777776653 3455666677777777777777777776655432211100
Q ss_pred HHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCC
Q 003710 260 QVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPD 336 (801)
Q Consensus 260 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd 336 (801)
....+..+...|.+.|++++|.+.|+++.+ .+...+..+...|.+.|++++|.++|+++... +....
T Consensus 179 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~ 248 (389)
T PRK11788 179 ---------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYL 248 (389)
T ss_pred ---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhH
Confidence 011233455556666666666666666532 23345566666777777777777777777643 11111
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCC--CCCHHHHHHHHHHHH
Q 003710 337 CITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMI--EKNLVSWNAMIAAYV 414 (801)
Q Consensus 337 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~ 414 (801)
..++..+..++...|+.++|.+.+..+.+.. |+..++..++..|.+.|++++|..+|+++. .|+..+++.++..+.
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 2345566666666777777777666666543 444555677777777788888887777663 356667777777666
Q ss_pred H---cCCHHHHHHHHHHHhCCCCCCCHh
Q 003710 415 R---NGQNREAMELFQDLWSEPLKPDAM 439 (801)
Q Consensus 415 ~---~g~~~~A~~l~~~m~~~g~~pd~~ 439 (801)
. .|+.++++.+|++|.+.+++|+..
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 4 457778888888887777666655
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=1.8e-15 Score=173.59 Aligned_cols=414 Identities=11% Similarity=0.031 Sum_probs=270.1
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhc
Q 003710 203 WNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGK 282 (801)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~ 282 (801)
+...-..|.+.|++++|+..|++... +.|+...|..+-.++...|+++.|...+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 33455566777777777777777654 45666666666677777777777777777777653 2245566667777788
Q ss_pred CCChHHHHHHHhhcCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCCChhhHHHHHHHHhccCChHHHHH
Q 003710 283 CGVVDYAERLFNMIFPRN---IVAWNAMVGGYVVNAHFLESFSCLRKMLED-DNLNPDCITIINLLPSCTKLGALLEGKS 358 (801)
Q Consensus 283 ~g~~~~A~~lf~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~g~~pd~~t~~~ll~~~~~~g~~~~a~~ 358 (801)
.|++++|..-|......+ ......++..+.. ..+........+. ....|........+..+ .......
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 278 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSF----RPKPRPA 278 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc----cCCcchh
Confidence 888888877665442211 1111111111111 1222222222221 01112111111111111 1111111
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHH------HccCChHHHHHHHhcCCCC------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 003710 359 IHGYAIRKGFLPNVALETALIDMY------AGSGALKMTEKLFGSMIEK------NLVSWNAMIAAYVRNGQNREAMELF 426 (801)
Q Consensus 359 ~~~~~~~~g~~~~~~~~~~Li~~y------~k~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~ 426 (801)
-+.... ..+......++..+ ...+++++|.+.|+...+. +...|+.+...+...|++++|+..|
T Consensus 279 ~~~~~~----~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 279 GLEDSN----ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhccc----ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 111100 11111111111111 2346888999999877532 3456888888888999999999999
Q ss_pred HHHhCCCCCCC-HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHH
Q 003710 427 QDLWSEPLKPD-AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAY 505 (801)
Q Consensus 427 ~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~ 505 (801)
++.... .|+ ...|..+...+...|++++|...++.+++.. |+ +...|..+...|
T Consensus 355 ~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~---------------------~~~~~~~lg~~~ 409 (615)
T TIGR00990 355 SKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SE---------------------DPDIYYHRAQLH 409 (615)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC---------------------CHHHHHHHHHHH
Confidence 998764 565 4467777778888999999999999887753 22 234566666777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHH
Q 003710 506 AIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLD 583 (801)
Q Consensus 506 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 583 (801)
...|++++|++.|++.++ +.|+ ...+..+...+.+.|++++|+..|+...+. .|+ ...|..+..+|...|+++
T Consensus 410 ~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHH
Confidence 778888888999999988 4565 456777888899999999999999998753 465 788999999999999999
Q ss_pred HHHHHHHhCCC-CCCc-chH-------HHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003710 584 QAKRFIEEMPS-APTA-RIW-------GALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQI 654 (801)
Q Consensus 584 eA~~~~~~m~~-~p~~-~~~-------~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 654 (801)
+|.+.+++... .|+. ..+ +..+..+...|++++|+..++++++++|++...+..++.+|...|++++|.+.
T Consensus 485 ~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 485 EAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999988543 3321 111 11122234469999999999999999999999999999999999999999999
Q ss_pred HHHHHHC
Q 003710 655 KAIMEKE 661 (801)
Q Consensus 655 ~~~m~~~ 661 (801)
+++..+.
T Consensus 565 ~e~A~~l 571 (615)
T TIGR00990 565 FERAAEL 571 (615)
T ss_pred HHHHHHH
Confidence 9988663
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=6.3e-15 Score=172.16 Aligned_cols=385 Identities=10% Similarity=0.041 Sum_probs=236.2
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhc---CCCCcccHHHHHHHHHhCCChhHHHHH
Q 003710 247 IEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMI---FPRNIVAWNAMVGGYVVNAHFLESFSC 323 (801)
Q Consensus 247 ~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l 323 (801)
..|+.++|.+++....... +.+...+..+...+.+.|++++|.++|++. .+.+...+..+...+...|++++|+..
T Consensus 27 ~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3344444444444443311 223334445555555555555555555553 122333444555555555555555555
Q ss_pred HHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCH
Q 003710 324 LRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNL 403 (801)
Q Consensus 324 ~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~ 403 (801)
+++..+. .|+...+..+..++...|+.++|...++.+++.. +.+..++..+...+.+.|..+.|.+.++.... ++
T Consensus 106 l~~~l~~---~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p 180 (765)
T PRK10049 106 AKQLVSG---APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TP 180 (765)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CH
Confidence 5555543 2222224444445555566666666665555543 22344445566666677777777777766654 21
Q ss_pred H--------HHHHHHHHH-----HHcCCH---HHHHHHHHHHhCC-CCCCCHh-hHH----HHHHHHHhhcChhhHHHHH
Q 003710 404 V--------SWNAMIAAY-----VRNGQN---REAMELFQDLWSE-PLKPDAM-TFA----SILPAYAEIATLSDSMQIH 461 (801)
Q Consensus 404 ~--------~~~~li~~~-----~~~g~~---~~A~~l~~~m~~~-g~~pd~~-t~~----~ll~a~~~~~~~~~a~~i~ 461 (801)
. ....++..+ ...+++ ++|++.++.+... ...|+.. .+. ..+.++...|+.++|...+
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~ 260 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEY 260 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 1 111112211 122233 6788888888753 2233321 111 1134455678889999998
Q ss_pred HHHHHhCCC-CchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHH
Q 003710 462 SLITKLGLV-SNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN-----ESTFVS 535 (801)
Q Consensus 462 ~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ 535 (801)
+.+.+.+-+ |+-. ..| +...|...|++++|+..|+++.+.. |. ......
T Consensus 261 ~~ll~~~~~~P~~a---------------------~~~--la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~ 315 (765)
T PRK10049 261 QRLKAEGQIIPPWA---------------------QRW--VASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELAD 315 (765)
T ss_pred HHhhccCCCCCHHH---------------------HHH--HHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHH
Confidence 888876522 2210 111 2345666777777789998877632 32 234556
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcch
Q 003710 536 LLSSCSISGMVDEGWNYFDSMRKDYG----------IVPG---IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARI 600 (801)
Q Consensus 536 ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~ 600 (801)
+..++...|++++|.++++.+.+... -.|+ ...+..+..++...|++++|++.++++.. +.+...
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l 395 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGL 395 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 66678889999999999998875311 1123 23556788889999999999999998754 234677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710 601 WGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG 662 (801)
Q Consensus 601 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 662 (801)
|..+...+...|+.+.|+..++++++++|++...+..++..+...|+|++|..+++.+.+..
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 88888889999999999999999999999999999999999999999999999999987743
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=3e-13 Score=147.64 Aligned_cols=565 Identities=13% Similarity=0.069 Sum_probs=378.6
Q ss_pred hHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHHHHC--CCCCCcccHHHHHHHHhcCCChhHHHHHHH
Q 003710 84 MESACYLFEKMSY--L-DTYIWNVVIRGFVDNGLFQEAVEFHHRMVCE--GFKADYFTYPFVIKACAGLLYLSEGEKVHG 158 (801)
Q Consensus 84 ~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 158 (801)
++.|.+.|..+.. | |+...-.-.......+++..|+.+|...... ...||+.. .+-..+.+.++.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 5777777766542 2 3322222223334578899999999886543 34555543 22244568888888888888
Q ss_pred HHHHhCCCCchhhHhHHHHHHH------hcCCchHHHHhhccCC---CCCcccHHHHHHHHHcCCChhhHHHHHHHHHhC
Q 003710 159 SLFKSGLNSDVYVCNSLIVMYM------KLGCVECAERMFDEMP---VRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNC 229 (801)
Q Consensus 159 ~~~~~g~~~~~~~~~~li~~y~------~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 229 (801)
.+.+.. | ...++++.... ....+..+..++...- ..|++..|.|-+-|.-.|+++.++.+...+...
T Consensus 224 ralqLd--p--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 224 RALQLD--P--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHhcC--h--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 888653 2 33333333321 1123444555544432 458888999999999999999999999888764
Q ss_pred CCC--CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC--C-CcccH
Q 003710 230 GLR--YDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP--R-NIVAW 304 (801)
Q Consensus 230 g~~--p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~--~-~~~~~ 304 (801)
... .-...|..+-+++-..|+++.|...|.+..+..-..-+.-+--|..+|.+.|+++.+...|+.+.. | +..+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 311 123457778888889999999999998887764222233344677999999999999999998844 3 44455
Q ss_pred HHHHHHHHhCC----ChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHH----HHhCCCCchhHHH
Q 003710 305 NAMVGGYVVNA----HFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYA----IRKGFLPNVALET 376 (801)
Q Consensus 305 ~~li~~~~~~g----~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~----~~~g~~~~~~~~~ 376 (801)
..+-..|...+ ..++|..++.+..+. ...|...|..+-..+-. ++.......+..+ ...+-.+...+.|
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 55555666554 456677777666653 23344455555444443 3433335555443 4566678889999
Q ss_pred HHHHHHHccCChHHHHHHHhcCCCC-------CH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhh-H
Q 003710 377 ALIDMYAGSGALKMTEKLFGSMIEK-------NL-------VSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMT-F 441 (801)
Q Consensus 377 ~Li~~y~k~g~~~~A~~~f~~~~~~-------~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~ 441 (801)
.+...+...|.++.|...|+..... |. .-|| +...+-..++.+.|.+.|+..... .|.-++ |
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilke--hp~YId~y 533 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKE--HPGYIDAY 533 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHH
Confidence 9999999999999999999876321 22 1233 344555667889999999998764 455443 2
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc--------------hHHHHHHHHHHHHH
Q 003710 442 ASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR--------------DVVSWNVIIMAYAI 507 (801)
Q Consensus 442 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~--------------d~~~~~~li~~~~~ 507 (801)
..++...-..+...+|...+..+.... ..++.+.+-+.+.|.+...+..|. |..+.-+|.+.|.+
T Consensus 534 lRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 534 LRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 233212223456777777777777543 344555555666777766666665 33444444443332
Q ss_pred ------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 003710 508 ------------HGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDL 575 (801)
Q Consensus 508 ------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 575 (801)
.+..++|+++|.+.++.. +-|...=+.+.-.++..|++.+|..+|.+..+.. .-...+|-.+..+
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHC 689 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHH
Confidence 345788999999988743 3355666777778899999999999999998752 2335678889999
Q ss_pred HHhcCCHHHHHHHHHhCCC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHH---------
Q 003710 576 LGRIGNLDQAKRFIEEMPS----APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMY--------- 642 (801)
Q Consensus 576 ~~~~g~~~eA~~~~~~m~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y--------- 642 (801)
|..+|++-.|+++|+.... +.+..+...|..++...|.+.+|.+.+..+..+.|.|+..-..++-+.
T Consensus 690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr 769 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILR 769 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHh
Confidence 9999999999999987543 356778888999999999999999999999999999877554443333
Q ss_pred ----------HHcCCchHHHHHHHHHHHCCCc
Q 003710 643 ----------AEAGRWEDVEQIKAIMEKEGLK 664 (801)
Q Consensus 643 ----------~~~g~~~~a~~~~~~m~~~g~~ 664 (801)
...+..++|.++|..|...+-+
T Consensus 770 ~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 770 LEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3334577888899888876543
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=1.2e-14 Score=166.17 Aligned_cols=345 Identities=9% Similarity=-0.007 Sum_probs=239.4
Q ss_pred HHHHHHhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCh-hhHHHHHHHHhcc
Q 003710 275 SLVDMYGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDC-ITIINLLPSCTKL 350 (801)
Q Consensus 275 ~li~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~ 350 (801)
.++....+.|+.++|..+++.... .+...+..++.+....|++++|+..|+++... .|+. ..+..+...+...
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~---~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV---NVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHc
Confidence 345566677888888888877632 34445555666677788888888888888753 4443 3556666677788
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003710 351 GALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMI--EK-NLVSWNAMIAAYVRNGQNREAMELFQ 427 (801)
Q Consensus 351 g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~ 427 (801)
|+.+.|...+..+++.. +.+...+..+...|...|+.++|...++.+. .+ +...+..+ ..+.+.|++++|+..++
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 88888888888887753 3356677778888888888888888877652 22 33333333 34677888888888888
Q ss_pred HHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHH
Q 003710 428 DLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAI 507 (801)
Q Consensus 428 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~ 507 (801)
.+......++...+..+..++...|+.++|.+.+..+.+.. +.+...+..+..+|...|+.++|.
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~-------------- 266 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAK-------------- 266 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhH--------------
Confidence 87665333344444455567777888888888888877654 333444444444444444444330
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHH
Q 003710 508 HGLGKISIQLFSEMREKGIKPNE-STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQA 585 (801)
Q Consensus 508 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA 585 (801)
.+|+..|++..+ +.|+. ..+..+...+...|++++|...++...+ +.|+ ...+..+..+|.+.|++++|
T Consensus 267 ----~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 267 ----LQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred ----HHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 247899999887 45654 4677888889999999999999998875 3566 66777888999999999999
Q ss_pred HHHHHhCCC-CCCcchHHH-HHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 586 KRFIEEMPS-APTARIWGA-LLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 586 ~~~~~~m~~-~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
.+.++++.. .|+...+.. +..++...|+.++|...++++++..|++. ...|++|...+....+
T Consensus 338 ~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 338 SDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQIS 402 (656)
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHH
Confidence 999988764 466544443 45678889999999999999999998864 2344556555555544
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.72 E-value=3.3e-14 Score=162.55 Aligned_cols=306 Identities=10% Similarity=0.004 Sum_probs=209.3
Q ss_pred HhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCC-hhhHHHHHHHHhccCChHH
Q 003710 280 YGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPD-CITIINLLPSCTKLGALLE 355 (801)
Q Consensus 280 y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~~~~~~g~~~~ 355 (801)
....|+.++|...|+++.. .+...|..+...+.+.|++++|+..|++... +.|+ ...+..+...+...|+.++
T Consensus 86 ~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~---l~P~~~~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 86 PLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL---AFSGNSQIFALHLRTLVLMDKELQ 162 (656)
T ss_pred HhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCChHH
Confidence 3345555555555555422 2334455555566666666666666666653 2343 3345556666667777777
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q 003710 356 GKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEK----NLVSWNAMIAAYVRNGQNREAMELFQDLWS 431 (801)
Q Consensus 356 a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 431 (801)
|...+..+....-. +...+..+ ..+.+.|++++|...++.+.+. +...+..+...+.+.|++++|+..|++...
T Consensus 163 A~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 163 AISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777666554322 23333333 3478899999999999987443 333445567788999999999999999987
Q ss_pred CCCCCCHhhHHHHHHHHHhhcChhh----HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHH
Q 003710 432 EPLKPDAMTFASILPAYAEIATLSD----SMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAI 507 (801)
Q Consensus 432 ~g~~pd~~t~~~ll~a~~~~~~~~~----a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~ 507 (801)
.. +-+...+..+-..+...|++++ |...++.+.+.. |+ +...|..+...+..
T Consensus 241 ~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~---------------------~~~a~~~lg~~l~~ 296 (656)
T PRK15174 241 RG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SD---------------------NVRIVTLYADALIR 296 (656)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CC---------------------CHHHHHHHHHHHHH
Confidence 53 2245566677788889999885 788888888753 33 23456666777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHH
Q 003710 508 HGLGKISIQLFSEMREKGIKPNE-STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGI-EHYGCIIDLLGRIGNLDQA 585 (801)
Q Consensus 508 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA 585 (801)
.|++++|+..+++..+ ..|+. ..+..+..++...|++++|...|+.+.+. .|+. ..+..+..++...|+.++|
T Consensus 297 ~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA 371 (656)
T PRK15174 297 TGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEA 371 (656)
T ss_pred CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHH
Confidence 8888888999999998 45664 45667788899999999999999998753 5663 3445567889999999999
Q ss_pred HHHHHhCCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 003710 586 KRFIEEMPS-APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQD 630 (801)
Q Consensus 586 ~~~~~~m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 630 (801)
.+.+++... .|+.. ..++++|...+.++++.-+.
T Consensus 372 ~~~l~~al~~~P~~~-----------~~~~~ea~~~~~~~~~~~~~ 406 (656)
T PRK15174 372 ESVFEHYIQARASHL-----------PQSFEEGLLALDGQISAVNL 406 (656)
T ss_pred HHHHHHHHHhChhhc-----------hhhHHHHHHHHHHHHHhcCC
Confidence 999998653 35432 34556777777777765433
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=7.6e-13 Score=144.60 Aligned_cols=528 Identities=13% Similarity=0.092 Sum_probs=375.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHh--cCCChhHHHHHHHHHHHhC--CCCchhhHhHHHHHHHhcCCchHHH
Q 003710 114 LFQEAVEFHHRMVCEGFKADYFTYPFVIKACA--GLLYLSEGEKVHGSLFKSG--LNSDVYVCNSLIVMYMKLGCVECAE 189 (801)
Q Consensus 114 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~ 189 (801)
+.+.|...|....+.. ++|. ...+.++|. ..+++..|..+|..++... ..+|+.+. +-..++++|+.+.|+
T Consensus 145 ~~~~A~a~F~~Vl~~s-p~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQS-PDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKAL 219 (1018)
T ss_pred cHHHHHHHHHHHHhhC-Ccch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHH
Confidence 3689999999988753 3333 345566665 5678999999999977653 35565543 336678999999999
Q ss_pred HhhccCCCCCcccHHHHHHHHH---c---CCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 003710 190 RMFDEMPVRDTVSWNSMIGGYC---S---VGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIK 263 (801)
Q Consensus 190 ~~f~~m~~~d~~~~~~li~~~~---~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~ 263 (801)
..|.+..+-|+..-++++.... . ...+..++.++...-... .-|+...+.|-+-+...|+++.+..+...++.
T Consensus 220 ~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 9999988666655555553221 1 223455566655543321 23566777788888899999999999999987
Q ss_pred hCCCCc--hHHHHHHHHHHhcCCChHHHHHHHhhcCC--CC--cccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCh
Q 003710 264 SGLEMD--VMVQTSLVDMYGKCGVVDYAERLFNMIFP--RN--IVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDC 337 (801)
Q Consensus 264 ~g~~~~--~~~~~~li~~y~~~g~~~~A~~lf~~m~~--~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~ 337 (801)
.-.... ...|--+..+|-..|++++|...|-+... +| +..+--+...|...|+.+++...|....+. .||.
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~---~p~~ 375 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ---LPNN 375 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh---Ccch
Confidence 753221 22356678999999999999999987744 22 445666788999999999999999999864 4554
Q ss_pred -hhHHHHHHHHhccC----ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCh------HHHHHHHhc-CCCCCHHH
Q 003710 338 -ITIINLLPSCTKLG----ALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGAL------KMTEKLFGS-MIEKNLVS 405 (801)
Q Consensus 338 -~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~------~~A~~~f~~-~~~~~~~~ 405 (801)
.|...+-..|+..+ ..+.|..+.....+.- +.|...|-.+..+|-...-+ ..|..++.. +....+..
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 46666656666554 4566666666655543 44666676676666654432 333333322 23356778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhCC---CCCCCH-----hhHHHHHH-HHHhhcChhhHHHHHHHHHHhCCCCchHHH
Q 003710 406 WNAMIAAYVRNGQNREAMELFQDLWSE---PLKPDA-----MTFASILP-AYAEIATLSDSMQIHSLITKLGLVSNIYIS 476 (801)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~-----~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 476 (801)
.|.+...+...|++++|...|.+.... ...+|. +|...-+. ..-..++.+.|.+.|..+.+.. |
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p----- 527 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--P----- 527 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--c-----
Confidence 899999999999999999999998765 233343 22222333 3445678999999999999754 2
Q ss_pred HHHHHHHHhcC-------Cccccc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHH
Q 003710 477 NSIVYMYAKCG-------DLQTAR------------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKG-IKPNESTFVSL 536 (801)
Q Consensus 477 ~~li~~y~~~g-------~~~~A~------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~l 536 (801)
+.|++|.+.| .+.+|. +...|+-+...|.....+..|.+-|+.....- ..+|.....+|
T Consensus 528 -~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL 606 (1018)
T KOG2002|consen 528 -GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL 606 (1018)
T ss_pred -hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence 3556666665 333333 66788888889999999988888777665432 23687887788
Q ss_pred HHHHhc------------cCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchH
Q 003710 537 LSSCSI------------SGMVDEGWNYFDSMRKDYGIVP-GIEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIW 601 (801)
Q Consensus 537 l~a~~~------------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~ 601 (801)
.+.|.+ .+..++|+++|....+ ..| |...-+-+.-.++..|++.+|.++|.+... ..+..+|
T Consensus 607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~ 683 (1018)
T KOG2002|consen 607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVW 683 (1018)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCcee
Confidence 775543 3456778888887764 334 467777888899999999999999998865 2466889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccC--CCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710 602 GALLTASRKNNDIVSAEFAARHVLSSA--QDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG 662 (801)
Q Consensus 602 ~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 662 (801)
..|...|...|++..|.++|+..++.. .+++.+...|+.++.+.|+|.+|.+.........
T Consensus 684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999998753 3567888899999999999999999887766543
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=3e-13 Score=154.88 Aligned_cols=178 Identities=9% Similarity=0.006 Sum_probs=120.7
Q ss_pred HHHHhcCCchHHHHhhccCCCCCcc---cHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHH---HHHHhccCC
Q 003710 177 VMYMKLGCVECAERMFDEMPVRDTV---SWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISA---LGAISIEGC 250 (801)
Q Consensus 177 ~~y~~~g~~~~A~~~f~~m~~~d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a~~~~~~ 250 (801)
-...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+..+ ...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCC
Confidence 3456889999999999887743333 23378888888899999999988876 4433333332 345667788
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHh--CCChhHHHHHHHHHH
Q 003710 251 LKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVV--NAHFLESFSCLRKML 328 (801)
Q Consensus 251 ~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~ 328 (801)
++.|.++++++++... .+..++..++..|...++.++|.+.++++...+......+..+|.. .++..+|++.++++.
T Consensus 118 yd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 8888888888888753 2356666778888888888888888888865443332224344443 455556888888888
Q ss_pred hCCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHH
Q 003710 329 EDDNLNPD-CITIINLLPSCTKLGALLEGKSIHGY 362 (801)
Q Consensus 329 ~~~g~~pd-~~t~~~ll~~~~~~g~~~~a~~~~~~ 362 (801)
+. .|+ ...+.....++.+.|-...|.++...
T Consensus 197 ~~---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 197 RL---APTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred Hh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 64 454 34456666777777777776655443
No 26
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.70 E-value=4.2e-13 Score=154.11 Aligned_cols=273 Identities=11% Similarity=0.009 Sum_probs=197.2
Q ss_pred cCChHHHHHHHHHHHHhC-C-CCchhHHHHHHHHHHccCChHHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCCHHHHHH
Q 003710 350 LGALLEGKSIHGYAIRKG-F-LPNVALETALIDMYAGSGALKMTEKLFGSMIE--K-NLVSWNAMIAAYVRNGQNREAME 424 (801)
Q Consensus 350 ~g~~~~a~~~~~~~~~~g-~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 424 (801)
.+.+++|.+.++..++.+ . +.....++.+...|...|++++|...|++..+ | +...|..+...+...|++++|+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 356777777777777654 2 22455677778888888999999998887743 2 35577888888889999999999
Q ss_pred HHHHHhCCCCCC-CHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHH
Q 003710 425 LFQDLWSEPLKP-DAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIM 503 (801)
Q Consensus 425 l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~ 503 (801)
.|++..+. .| +...+..+...+...|++++|...++..++.. |+ +...|..+..
T Consensus 387 ~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~---------------------~~~~~~~la~ 441 (615)
T TIGR00990 387 DFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PD---------------------FIFSHIQLGV 441 (615)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--cc---------------------CHHHHHHHHH
Confidence 99988764 34 45667777778888999999999999888753 32 1234555666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--------HHHHHHHH
Q 003710 504 AYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGI--------EHYGCIID 574 (801)
Q Consensus 504 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--------~~~~~li~ 574 (801)
.+.+.|++++|+..|++.++. .|+ ...+..+...+...|++++|++.|+...+ +.|+. ..++....
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHH
Confidence 777788888889999998873 454 56788888889999999999999998764 33431 11222233
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHH
Q 003710 575 LLGRIGNLDQAKRFIEEMP-SAPT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVE 652 (801)
Q Consensus 575 ~~~~~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 652 (801)
.+...|++++|.+++++.. ..|+ ...+..+...+...|++++|...+++++++.+.....+ ....|.+|.
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~ 588 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEAT 588 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHH
Confidence 4455799999999998853 2444 35688888999999999999999999998877643322 223455666
Q ss_pred HHHHHHHH
Q 003710 653 QIKAIMEK 660 (801)
Q Consensus 653 ~~~~~m~~ 660 (801)
++....++
T Consensus 589 ~~~~~~~~ 596 (615)
T TIGR00990 589 RTQIQVQE 596 (615)
T ss_pred HHHHHHHH
Confidence 66555554
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.69 E-value=1.2e-13 Score=161.42 Aligned_cols=408 Identities=9% Similarity=0.025 Sum_probs=256.7
Q ss_pred chhhHhHHHHHHHhcCCchHHHHhhccCCC---CCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCC-hhhHHHHHH
Q 003710 168 DVYVCNSLIVMYMKLGCVECAERMFDEMPV---RDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYD-RFSLISALG 243 (801)
Q Consensus 168 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 243 (801)
+.....-.+......|+.++|++++.+... .+...+..+...+.+.|++++|+.+|++..+. .|+ ......+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 333444555666677777888777777553 23334777777777778888888877776653 333 334445555
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHH
Q 003710 244 AISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLES 320 (801)
Q Consensus 244 a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A 320 (801)
.+...|+.++|...++++++.. +.+.. +..+..++...|+.++|...++++.. .+...+..+...+...|..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 6667777777777777776663 22344 66666677777777777777776633 2344455566666666777777
Q ss_pred HHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH-----HccCCh---HHHH
Q 003710 321 FSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMY-----AGSGAL---KMTE 392 (801)
Q Consensus 321 ~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y-----~k~g~~---~~A~ 392 (801)
+..++.... .|+.... + + ......++..+ ...+++ ++|.
T Consensus 170 l~~l~~~~~----~p~~~~~---l-------------~-------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al 216 (765)
T PRK10049 170 LGAIDDANL----TPAEKRD---L-------------E-------------ADAAAELVRLSFMPTRSEKERYAIADRAL 216 (765)
T ss_pred HHHHHhCCC----CHHHHHH---H-------------H-------------HHHHHHHHHhhcccccChhHHHHHHHHHH
Confidence 766655432 2321000 0 0 00001111111 111222 4555
Q ss_pred HHHhcCCC-----CCH-HH----HHHHHHHHHHcCCHHHHHHHHHHHhCCCCC-CCHhhHHHHHHHHHhhcChhhHHHHH
Q 003710 393 KLFGSMIE-----KNL-VS----WNAMIAAYVRNGQNREAMELFQDLWSEPLK-PDAMTFASILPAYAEIATLSDSMQIH 461 (801)
Q Consensus 393 ~~f~~~~~-----~~~-~~----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~~~~~~a~~i~ 461 (801)
..++.+.+ ++. .. ....+..+...|++++|+..|+++.+.+.. |+.. ...+..++...|++++|...+
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHH
Confidence 55555431 111 11 111133455678889999999998876532 3322 222456788888999999988
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCCH
Q 003710 462 SLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKG-----------IKPNE 530 (801)
Q Consensus 462 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~ 530 (801)
+.+.+.. |... .. ....+..+..++...|++++|+++++++.+.. -.||.
T Consensus 296 ~~~l~~~--p~~~---------------~~--~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~ 356 (765)
T PRK10049 296 TELFYHP--ETIA---------------DL--SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND 356 (765)
T ss_pred HHHhhcC--CCCC---------------CC--ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence 8877532 2110 00 01123344456677788888899999888742 12342
Q ss_pred ---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-cchHHHH
Q 003710 531 ---STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APT-ARIWGAL 604 (801)
Q Consensus 531 ---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~l 604 (801)
..+..+...+...|++++|+++++.+... .|+ ...+..+..++...|++++|++.+++... .|+ ...+..+
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 23455667888899999999999998753 455 88899999999999999999999998765 465 4566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCchhH
Q 003710 605 LTASRKNNDIVSAEFAARHVLSSAQDNTGCY 635 (801)
Q Consensus 605 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 635 (801)
.......|+++.|+..++++++..|+++.+.
T Consensus 434 a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 434 AWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 7778889999999999999999999998654
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.68 E-value=1.1e-12 Score=150.25 Aligned_cols=445 Identities=9% Similarity=-0.028 Sum_probs=301.3
Q ss_pred HhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHH-H--HHHHHcCCChhhHH
Q 003710 144 CAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNS-M--IGGYCSVGDGVSSL 220 (801)
Q Consensus 144 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~-l--i~~~~~~g~~~~A~ 220 (801)
..+.|++..|...+..+.+........++ .++..+...|+.++|+..+++...|+...+.. + ...|...|++++|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45889999999999999987532222345 88899999999999999999988775554444 3 34777889999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC--
Q 003710 221 VFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP-- 298 (801)
Q Consensus 221 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~-- 298 (801)
++|+++.+.... +...+..++..+...++.++|.+.+..+.+. .|+...+-.++..+...++..+|.+.++++.+
T Consensus 123 ely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 999999875422 3455667778888999999999999999876 45555565555566556677679999999844
Q ss_pred C-CcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 003710 299 R-NIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETA 377 (801)
Q Consensus 299 ~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 377 (801)
| +...+..++....+.|-...|+++..+- |+-++-...... -.....+.++.+..++..--
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~-------p~~f~~~~~~~l---------~~~~~a~~vr~a~~~~~~~~-- 261 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKEN-------PNLVSAEHYRQL---------ERDAAAEQVRMAVLPTRSET-- 261 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC-------ccccCHHHHHHH---------HHHHHHHHHhhcccccccch--
Confidence 3 5667788889999999999999776543 433332211110 00111122222221111000
Q ss_pred HHHHHHccCChHHHHHHHhcC----CC-CC-HHH----HHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHH
Q 003710 378 LIDMYAGSGALKMTEKLFGSM----IE-KN-LVS----WNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPA 447 (801)
Q Consensus 378 Li~~y~k~g~~~~A~~~f~~~----~~-~~-~~~----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 447 (801)
. +.--.+.|..-++.+ .. |. ... .--.+.++...|++.++++.|+.|...|.+....+-..+..+
T Consensus 262 --~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 262 --E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred --h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 0 000112222222222 11 11 111 123456778889999999999999988876555677888899
Q ss_pred HHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--
Q 003710 448 YAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKG-- 525 (801)
Q Consensus 448 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-- 525 (801)
|...+..++|..++..+....-+... .-.+......|.-+|...+++++|..+++++.+..
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~-----------------~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~ 399 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFR-----------------NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY 399 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccC-----------------CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence 99999999999999988754311000 00011223445566667777777799999988731
Q ss_pred -----------CCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003710 526 -----------IKPNEST-FVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEM 592 (801)
Q Consensus 526 -----------~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m 592 (801)
..||-.. +..+...+.-.|++.+|++.++.+.. ..|. ......+.+++...|...+|.+.++..
T Consensus 400 ~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 400 QVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred EEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1123233 34455667888999999999999874 3454 888899999999999999999999776
Q ss_pred CC-CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhH
Q 003710 593 PS-APT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCY 635 (801)
Q Consensus 593 ~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 635 (801)
.. .|+ ..+...+..+....|+++.|+.+.+.+++..|++..+-
T Consensus 477 ~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 477 ESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 54 454 44555667777888999999999999999999987543
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=5.2e-13 Score=132.57 Aligned_cols=344 Identities=15% Similarity=0.148 Sum_probs=227.5
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHH
Q 003710 98 DTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIV 177 (801)
Q Consensus 98 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 177 (801)
...+|.+||.|+++-...+.|.+++.+......+.+..+||.+|.+-. +..++++..+|+.....||.+++|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 445788999999999999999999999888878888899999988754 3445888999999999999999999999
Q ss_pred HHHhcCCchHHHHhh----ccCC----CCCcccHHHHHHHHHcCCChhh-HHHHHHHHHh----CCCCC----ChhhHHH
Q 003710 178 MYMKLGCVECAERMF----DEMP----VRDTVSWNSMIGGYCSVGDGVS-SLVFFKEMQN----CGLRY----DRFSLIS 240 (801)
Q Consensus 178 ~y~~~g~~~~A~~~f----~~m~----~~d~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~g~~p----~~~t~~~ 240 (801)
..++.|+++.|++.+ .+|+ +|...+|..+|..+++.++..+ |..++.+.+. +.++| |...|.+
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 999999888876654 3343 6777788888887777777644 3444444432 22332 3455677
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHH
Q 003710 241 ALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLES 320 (801)
Q Consensus 241 ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A 320 (801)
.+..|.+..+.+.|.++++.+.... . |...|.. ++ ...-|..+....++....+.-
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~-N------------~~~ig~~------~~-----~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGD-N------------WKFIGPD------QH-----RNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC-c------------hhhcChH------HH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776654211 0 0000100 00 112244455566666667777
Q ss_pred HHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC-Ch---H-------
Q 003710 321 FSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSG-AL---K------- 389 (801)
Q Consensus 321 ~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g-~~---~------- 389 (801)
+..|..|.-. -+-|+..+...++++....+.++...+++..++..|...+....--++..+++.. .. +
T Consensus 418 ~~~Y~~lVP~-~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~ 496 (625)
T KOG4422|consen 418 LKWYEDLVPS-AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVA 496 (625)
T ss_pred HHHHHHhccc-eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 7777777766 6777777888888877777888888788777777775555544444444444433 11 0
Q ss_pred ---HHHHHHh-------cCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC-C---CCCHhhHHHHHHHHHhhcC
Q 003710 390 ---MTEKLFG-------SMI--EKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEP-L---KPDAMTFASILPAYAEIAT 453 (801)
Q Consensus 390 ---~A~~~f~-------~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~---~pd~~t~~~ll~a~~~~~~ 453 (801)
-|..+++ +|. +-.....+.+...+.+.|..++|.++|.-..+.+ - .|......-++.+.....+
T Consensus 497 ~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~s 576 (625)
T KOG4422|consen 497 FAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNS 576 (625)
T ss_pred HHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCC
Confidence 0111111 111 1134556677777888999999999998885544 2 2333334455666667778
Q ss_pred hhhHHHHHHHHHHhCCC
Q 003710 454 LSDSMQIHSLITKLGLV 470 (801)
Q Consensus 454 ~~~a~~i~~~~~~~g~~ 470 (801)
..+|...++.+...+++
T Consensus 577 psqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 577 PSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHHHHHHHHHHHHcCch
Confidence 88888888888766544
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.54 E-value=5.9e-10 Score=121.65 Aligned_cols=551 Identities=12% Similarity=0.078 Sum_probs=280.2
Q ss_pred HHcCCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHH
Q 003710 78 LVSSGSMESACYLFEKMSY---LDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGE 154 (801)
Q Consensus 78 ~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 154 (801)
+...|++++|.+++.++.+ .+...|..|...|-+.|+.++++..+-..-... +-|...|..+-.-....|.+.+|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 3334999999999988753 456689999999999999998887765544322 334556777777777888888888
Q ss_pred HHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCc-cc-------HHHHHHHHHcCCChhhHHHHHHHH
Q 003710 155 KVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDT-VS-------WNSMIGGYCSVGDGVSSLVFFKEM 226 (801)
Q Consensus 155 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~-~~-------~~~li~~~~~~g~~~~A~~l~~~m 226 (801)
-.+..+++.. +++....-.-..+|-+.|+...|..-|.++-..+. +. --.++..|...++-+.|++.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888888876 34444444456777888888888777766543222 11 112345555666667777766665
Q ss_pred HhCC-CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhc-CCCCcccH
Q 003710 227 QNCG-LRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMI-FPRNIVAW 304 (801)
Q Consensus 227 ~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m-~~~~~~~~ 304 (801)
...+ -..+..+++.++..+.+....+.+......+.....++|..-+.+- +.-..-+... ..++..+|
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----------~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----------ERRREEPNALCEVGKELSY 376 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----------hhccccccccccCCCCCCc
Confidence 5421 1223334444444445555555555444444331111111000000 0000000000 00011111
Q ss_pred HH----HHHHHHhC--CChhHHHHHHHHHHhCCC--CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 003710 305 NA----MVGGYVVN--AHFLESFSCLRKMLEDDN--LNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALET 376 (801)
Q Consensus 305 ~~----li~~~~~~--g~~~~A~~l~~~m~~~~g--~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 376 (801)
+. +.-++... +...+++.-| .... . +.-+...|.-+..++.+.|.+.+|..++..+......-+..+|-
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~--l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHF--LVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHH--HHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 11 01111111 1122222221 1111 2 11122234444444444455555555544444443333344444
Q ss_pred HHHHHHHccCChHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCC--------CCCCCHhhHHHHH
Q 003710 377 ALIDMYAGSGALKMTEKLFGSMIEK---NLVSWNAMIAAYVRNGQNREAMELFQDLWSE--------PLKPDAMTFASIL 445 (801)
Q Consensus 377 ~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~pd~~t~~~ll 445 (801)
.+..+|...|..+.|...|+..... +...--+|-..|.+.|+.++|++.+..|... +..|+........
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 4555555555555555544444222 1112222333444445555555555443211 1222222222223
Q ss_pred HHHHhhcChhhHHHHHHHHHHh----------------------CCCCchHHHHHHHHHHHhcCCccccc----------
Q 003710 446 PAYAEIATLSDSMQIHSLITKL----------------------GLVSNIYISNSIVYMYAKCGDLQTAR---------- 493 (801)
Q Consensus 446 ~a~~~~~~~~~a~~i~~~~~~~----------------------g~~~~~~~~~~li~~y~~~g~~~~A~---------- 493 (801)
..+.+.|+.++-..+-..|+.. +..........++.+-.+.++-...+
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 3333444443332222222210 00111112222233333332211111
Q ss_pred -------hHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHH--HH-HHHHHHHhccCCHHHHHHHHHHhH
Q 003710 494 -------DVVSW----NVIIMAYAIHGLGKISIQLFSEMREKGIK--PNES--TF-VSLLSSCSISGMVDEGWNYFDSMR 557 (801)
Q Consensus 494 -------d~~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~--t~-~~ll~a~~~~g~~~~a~~~~~~m~ 557 (801)
.+.-| .-+|..+++.|++++|+.+...+.+..+. ++.. ++ ...+.++...+++..|..+++.|.
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 12223 45677899999999999999988875432 2221 22 234567778999999999999998
Q ss_pred HhcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHH--HHhcCCHHHHHHHHHHHHccCCCC
Q 003710 558 KDYGIVPG---IEHYGCIIDLLGRIGNLDQAKRFIEEM-PSAPTARIWGALLTA--SRKNNDIVSAEFAARHVLSSAQDN 631 (801)
Q Consensus 558 ~~~~~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~ 631 (801)
..++..-+ ...|++..+.+.+.|+-.-=.+++... ...|+......++.+ ....+.+.-|...+-++....|++
T Consensus 694 ~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~ 773 (895)
T KOG2076|consen 694 TQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDS 773 (895)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCC
Confidence 76554433 566777777777776655555554443 333333222222322 345567778999999999999999
Q ss_pred chhHHHHHHHHH
Q 003710 632 TGCYVLLSNMYA 643 (801)
Q Consensus 632 ~~~~~~l~~~y~ 643 (801)
|.+-.+|+-++-
T Consensus 774 Pl~nl~lglafi 785 (895)
T KOG2076|consen 774 PLINLCLGLAFI 785 (895)
T ss_pred cHHHHHHHHHHH
Confidence 988777776664
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=1.2e-11 Score=123.52 Aligned_cols=475 Identities=13% Similarity=0.115 Sum_probs=267.8
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHH-HHHHHHhcCCChhHHHHHHHHHHHhCCCCc----hhhHhHHHHH
Q 003710 104 VVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYP-FVIKACAGLLYLSEGEKVHGSLFKSGLNSD----VYVCNSLIVM 178 (801)
Q Consensus 104 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~ 178 (801)
.|.+-|..+....+|+..|+-+.+...-||.-.+. .+-..+.+.+.+..|.+.+...+..-...+ ..+.+.+--.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 34455556667778888888777766666654432 223445566677778777777665532222 1233444445
Q ss_pred HHhcCCchHHHHhhccCC--CCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHH
Q 003710 179 YMKLGCVECAERMFDEMP--VRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKE 256 (801)
Q Consensus 179 y~~~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 256 (801)
+.+.|++++|..-|+... .||..+---||-++..-|+.++..+.|.+|..--..||..-|.
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi----------------- 348 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI----------------- 348 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-----------------
Confidence 677788888888877654 4565543334445555677777777787777654444443221
Q ss_pred HHHHHHHhCCCCchHHHHHHH-----HHHhcCC--ChHHHH----HHHhhcCCCCccc-HHHHHHHHHhCCChhHHHHHH
Q 003710 257 IHCQVIKSGLEMDVMVQTSLV-----DMYGKCG--VVDYAE----RLFNMIFPRNIVA-WNAMVGGYVVNAHFLESFSCL 324 (801)
Q Consensus 257 l~~~~~~~g~~~~~~~~~~li-----~~y~~~g--~~~~A~----~lf~~m~~~~~~~-~~~li~~~~~~g~~~~A~~l~ 324 (801)
+..-.|+....|--| .-.-+.. +.+++. ++..-+..||-.. +.--+...-..-..+-|.++
T Consensus 349 ------~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl- 421 (840)
T KOG2003|consen 349 ------KEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL- 421 (840)
T ss_pred ------CCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh-
Confidence 001122222222111 1111110 111111 1111111222110 00000000000001111100
Q ss_pred HHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc--CChHHHHHHHhcCCCCC
Q 003710 325 RKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGS--GALKMTEKLFGSMIEKN 402 (801)
Q Consensus 325 ~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~--g~~~~A~~~f~~~~~~~ 402 (801)
+| .-...+.+.|+++.|.+++..+.+..-..-...-|.|...+.-. .++.+|...-+....-|
T Consensus 422 -ei--------------~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d 486 (840)
T KOG2003|consen 422 -EI--------------NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID 486 (840)
T ss_pred -hh--------------hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc
Confidence 00 00112345666666666666665554433333333333333332 24444444443332211
Q ss_pred HHHHHHHH-----HHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHH
Q 003710 403 LVSWNAMI-----AAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISN 477 (801)
Q Consensus 403 ~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 477 (801)
-||.-. ..-..+|++++|.+.|++.+...-.-....|+.-| .+-..|++++|+..|-.+...- ..
T Consensus 487 --ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il-~n------ 556 (840)
T KOG2003|consen 487 --RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAIL-LN------ 556 (840)
T ss_pred --ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHH-Hh------
Confidence 122111 11123678888888888876543222222333222 2345667777766654433110 01
Q ss_pred HHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 003710 478 SIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKP-NESTFVSLLSSCSISGMVDEGWNYFDSM 556 (801)
Q Consensus 478 ~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 556 (801)
++...-.+.+.|-...+..+|++++-+... +.| |+..+.-|...|-+.|+-..|.+++-.-
T Consensus 557 ----------------n~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~yds 618 (840)
T KOG2003|consen 557 ----------------NAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDS 618 (840)
T ss_pred ----------------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhc
Confidence 122233455566677788888999977655 555 5567778888999999999999887643
Q ss_pred HHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCcchHHHHHHHH-HhcCCHHHHHHHHHHHHccCCCCch
Q 003710 557 RKDYGIVP-GIEHYGCIIDLLGRIGNLDQAKRFIEEMP-SAPTARIWGALLTAS-RKNNDIVSAEFAARHVLSSAQDNTG 633 (801)
Q Consensus 557 ~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~-~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~ 633 (801)
|..-| +.++...|..-|....-+++|+.+|++.. ..|+..-|..++..| ++.|++..|...++...+..|.|..
T Consensus 619 ---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedld 695 (840)
T KOG2003|consen 619 ---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD 695 (840)
T ss_pred ---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH
Confidence 44455 48888889999999999999999999875 489999999999877 6789999999999999999999999
Q ss_pred hHHHHHHHHHHcCCc
Q 003710 634 CYVLLSNMYAEAGRW 648 (801)
Q Consensus 634 ~~~~l~~~y~~~g~~ 648 (801)
.+-.|+.++...|.-
T Consensus 696 clkflvri~~dlgl~ 710 (840)
T KOG2003|consen 696 CLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHhccccch
Confidence 999999999888853
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.53 E-value=6e-09 Score=109.49 Aligned_cols=492 Identities=13% Similarity=0.052 Sum_probs=340.6
Q ss_pred HHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCC---CCCcccHHHHHHHHHcCCChhh
Q 003710 142 KACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMP---VRDTVSWNSMIGGYCSVGDGVS 218 (801)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~ 218 (801)
++.......+.|+-++....+.- +.+ .-|.-+|++...++.|.++++... ..+...|-+-...=-.+|+.+.
T Consensus 384 KaAVelE~~~darilL~rAvecc-p~s----~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVECC-PQS----MDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHhc-cch----HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH
Confidence 44445566666777777777653 222 234556667777788888876654 4467778776666677888877
Q ss_pred HHHHHHH----HHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHhcCCChHHHHHH
Q 003710 219 SLVFFKE----MQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMD--VMVQTSLVDMYGKCGVVDYAERL 292 (801)
Q Consensus 219 A~~l~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~l 292 (801)
..+++.+ +...|+..+...|..=..+|-..|..-....+...++..|++.. ..+++.-.+.+.+.+.++-|+.+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 7777654 45678888888888888888888888888888888887777543 45677777788888888888888
Q ss_pred HhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 003710 293 FNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFL 369 (801)
Q Consensus 293 f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 369 (801)
|....+ .+...|...+..--..|..++-..+|++.... ++-....+.......-..|++..|+.++..+.+..-.
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 876533 45667777777777778888888888887764 2222333333344444567777777777777665422
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHh-hHHHHHH
Q 003710 370 PNVALETALIDMYAGSGALKMTEKLFGSMI--EKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAM-TFASILP 446 (801)
Q Consensus 370 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~ 446 (801)
+..++-+-+..-.....++.|+.+|.+.. .+..-.|.--+..--..+..++|++++++.++ .-|+.. .|..+-+
T Consensus 617 -seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 -SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQ 693 (913)
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhH
Confidence 56666677777777777777777776653 23444454444444445667777777766655 245533 3333444
Q ss_pred HHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003710 447 AYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGI 526 (801)
Q Consensus 447 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 526 (801)
.+-+.++++.|+..|..-.+. ++..+ ..|-.+...--+.|..-+|..+|++.+-.+
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~-cP~~i----------------------pLWllLakleEk~~~~~rAR~ildrarlkN- 749 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKK-CPNSI----------------------PLWLLLAKLEEKDGQLVRARSILDRARLKN- 749 (913)
T ss_pred HHHHHHHHHHHHHHHHhcccc-CCCCc----------------------hHHHHHHHHHHHhcchhhHHHHHHHHHhcC-
Confidence 555556666666555443332 12222 344444444455566666688888887754
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHH
Q 003710 527 KPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLT 606 (801)
Q Consensus 527 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~ 606 (801)
+-|...|...+..-.+.|+.+.|..+.....++ ...+...|.--|.+..+.++-..+.+.+++. +.|+.+..++..
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~ 825 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAK 825 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHH
Confidence 345667899999999999999999998888764 4445778888888888888877777777765 456667777788
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCccCCcccEEE
Q 003710 607 ASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFE 673 (801)
Q Consensus 607 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~ 673 (801)
.+.....++.|...++++++.+|++..++..+-..+...|.-++-.++++..... .|.-|..|+-
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~a 890 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQA 890 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHH
Confidence 8888999999999999999999999999999999999999999988998887654 3445667753
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.51 E-value=2.1e-10 Score=124.26 Aligned_cols=530 Identities=11% Similarity=0.024 Sum_probs=300.1
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCC
Q 003710 120 EFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRD 199 (801)
Q Consensus 120 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d 199 (801)
.++..+...|+.|+..||..+|.-|+..|+.+.|- +|..|.-..+.....+++.++......++.+.+. +|-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 35566777888888888888888888888888888 8888887777777788888888888888776655 667
Q ss_pred cccHHHHHHHHHcCCChhhHHHHHHH-HH-------hCCCCCChhhHHHHHHHHhccC-------ChHHHHHHHHHHHHh
Q 003710 200 TVSWNSMIGGYCSVGDGVSSLVFFKE-MQ-------NCGLRYDRFSLISALGAISIEG-------CLKIGKEIHCQVIKS 264 (801)
Q Consensus 200 ~~~~~~li~~~~~~g~~~~A~~l~~~-m~-------~~g~~p~~~t~~~ll~a~~~~~-------~~~~a~~l~~~~~~~ 264 (801)
..+|+.|..+|.+.||... ++..++ |. ..|+.--..-|...+++|-..- ....-+.++++.++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888654 222222 21 1233222222222222221110 011122333444444
Q ss_pred CC-CCchHHHHH---HHHHH-hcCCChHHHHHHHhhcCC-CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChh
Q 003710 265 GL-EMDVMVQTS---LVDMY-GKCGVVDYAERLFNMIFP-RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCI 338 (801)
Q Consensus 265 g~-~~~~~~~~~---li~~y-~~~g~~~~A~~lf~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 338 (801)
+. .|-..-++. .++-. .-...+++-........+ ++..++.+.+..-..+|+.+.|..++.+|.+. |+..+.+
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~-gfpir~H 240 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK-GFPIRAH 240 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc-CCCcccc
Confidence 31 111111111 11111 111223333333333333 78899999999999999999999999999999 9999999
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 003710 339 TIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQ 418 (801)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 418 (801)
-|..+|-+ .++......+..-|...|+.|+..|+.-.+-...++|....+....+.-.--....+..+..|...+.+
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 88888876 788888889999999999999999988877777776554333322211111112223333333211111
Q ss_pred HH-----HHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHh--CCC-CchHHHHHHHHHHHhcCCcc
Q 003710 419 NR-----EAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKL--GLV-SNIYISNSIVYMYAKCGDLQ 490 (801)
Q Consensus 419 ~~-----~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~-~~~~~~~~li~~y~~~g~~~ 490 (801)
.+ -....+++..-.|+......|. +..-....|.-+...++-+.+... ... .++..+.+++.-|.+. .+
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr--~e 394 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR--IE 394 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH--HH
Confidence 11 1222223322233332222222 222222355566666665555421 111 1233344444444331 11
Q ss_pred ccchHHHHHHHHHHHHH---cCCHHHHHHHHHHH------------HH----CCCCC-------CHHHHHHHHHHHhccC
Q 003710 491 TARDVVSWNVIIMAYAI---HGLGKISIQLFSEM------------RE----KGIKP-------NESTFVSLLSSCSISG 544 (801)
Q Consensus 491 ~A~d~~~~~~li~~~~~---~g~~~~A~~l~~~m------------~~----~g~~p-------~~~t~~~ll~a~~~~g 544 (801)
.+.+...++ .-.+... .....+..++.... .. +-..| =...-..++..|+..-
T Consensus 395 ~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~ 473 (1088)
T KOG4318|consen 395 RHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEY 473 (1088)
T ss_pred hhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 111111122 1111111 11111111111111 00 01111 0112334455555555
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-----CCcchHHHHHHHHHhcCCHHHHHH
Q 003710 545 MVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSA-----PTARIWGALLTASRKNNDIVSAEF 619 (801)
Q Consensus 545 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-----p~~~~~~~ll~~~~~~g~~~~a~~ 619 (801)
+..+++..-+..... - - ...|..||+.+....++++|..+.++.... -|...+..+.....+++....+..
T Consensus 474 n~lK~l~~~ekye~~-l-f--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 474 NKLKILCDEEKYEDL-L-F--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHHHHHH-H-h--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 555555443333221 1 1 267999999999999999999999987632 345566777888888888888887
Q ss_pred HHHHHHc---cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCccCCcccE
Q 003710 620 AARHVLS---SAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSM 671 (801)
Q Consensus 620 ~~~~~~~---~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 671 (801)
+.+...+ ..|....+..-+.+.-+..|+.+...++++-+...|+.. +|--|
T Consensus 550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 7776654 334445666778888899999999999999999988865 45444
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=1e-10 Score=126.56 Aligned_cols=209 Identities=14% Similarity=0.121 Sum_probs=132.8
Q ss_pred cccccCCCCChhHHHHHHHHHcCCChHHHHHHHhhCCCC----ChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCc
Q 003710 59 TSKKSIGPRNITKTRALQELVSSGSMESACYLFEKMSYL----DTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADY 134 (801)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 134 (801)
+...++.|+.+++.+||..||..|+.+.|- +|.-|.-+ +...++.++.+..+.++.+.+. .|..
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 344678888888889999999999999998 77766532 3345677777766666665543 5666
Q ss_pred ccHHHHHHHHhcCCChhH---HHHHHHHHH----HhCCC-----------------CchhhHhHHHHHHHhcCCchHHHH
Q 003710 135 FTYPFVIKACAGLLYLSE---GEKVHGSLF----KSGLN-----------------SDVYVCNSLIVMYMKLGCVECAER 190 (801)
Q Consensus 135 ~~~~~ll~~~~~~~~~~~---a~~~~~~~~----~~g~~-----------------~~~~~~~~li~~y~~~g~~~~A~~ 190 (801)
.||..++.+|...||+.. ..+.+..+. ..|+. ||. ..++....-.|-++.+.+
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHHHHHH
Confidence 677777777777776543 222111111 11211 111 112222222333444444
Q ss_pred hhccCC----------------------------------CCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChh
Q 003710 191 MFDEMP----------------------------------VRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRF 236 (801)
Q Consensus 191 ~f~~m~----------------------------------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 236 (801)
++..+| .++..+|.+++..-..+|+.+.|..++.+|++.|+..+..
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 433332 2566777777777778888888888888888888877777
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCC
Q 003710 237 SLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGV 285 (801)
Q Consensus 237 t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~ 285 (801)
-|-.+|-+ .++...+..+..-|...|+.|+..|+..-+-...+.|.
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 77766655 66777777777778888888887777766655555444
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.50 E-value=5.9e-09 Score=114.04 Aligned_cols=583 Identities=13% Similarity=0.077 Sum_probs=354.4
Q ss_pred CCChhHH-HHHHHHHcCCChHHHHHHHhhC---CCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 003710 66 PRNITKT-RALQELVSSGSMESACYLFEKM---SYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVI 141 (801)
Q Consensus 66 ~~~~~~~-~l~~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 141 (801)
|.....+ .|-..|-..|+.++++..+-.. ...|.--|..+-....+.|++.+|.-.|.+..+.. +++...+---.
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers 248 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERS 248 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHH
Confidence 3333334 8889999999999998877553 34566789999999999999999999999998764 44444444455
Q ss_pred HHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHH----HHHHHhcCCchHHHHhhccCCC--C---CcccHHHHHHHHHc
Q 003710 142 KACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSL----IVMYMKLGCVECAERMFDEMPV--R---DTVSWNSMIGGYCS 212 (801)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l----i~~y~~~g~~~~A~~~f~~m~~--~---d~~~~~~li~~~~~ 212 (801)
..|-+.|+...|..-+.++.....+.|..-...+ +..|...++-+.|.+.++.... . +...+|.++..|.+
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 6778899999999999999887543333333333 4445566777888888877653 2 45678999999999
Q ss_pred CCChhhHHHHHHHHHhCCCCCCh----------------------hhHH----HHHHHHhccCChHHHHHHHHHHHHhCC
Q 003710 213 VGDGVSSLVFFKEMQNCGLRYDR----------------------FSLI----SALGAISIEGCLKIGKEIHCQVIKSGL 266 (801)
Q Consensus 213 ~g~~~~A~~l~~~m~~~g~~p~~----------------------~t~~----~ll~a~~~~~~~~~a~~l~~~~~~~g~ 266 (801)
...++.|......+......+|. ..|. -+.-++......+....+...+.+...
T Consensus 329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~ 408 (895)
T KOG2076|consen 329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV 408 (895)
T ss_pred hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC
Confidence 99999999998888762222222 1111 222334556666677777777777764
Q ss_pred --CCchHHHHHHHHHHhcCCChHHHHHHHhhcCC----CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChh-h
Q 003710 267 --EMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP----RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCI-T 339 (801)
Q Consensus 267 --~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t 339 (801)
.-++..|.-+.++|...|.+.+|.++|..+.. .+...|--+..+|...|.+++|.+.|...... .|+.. .
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~---~p~~~D~ 485 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL---APDNLDA 485 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCchhh
Confidence 44677888999999999999999999998844 46778999999999999999999999999854 56554 3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCC----------
Q 003710 340 IINLLPSCTKLGALLEGKSIHGYAI--------RKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEK---------- 401 (801)
Q Consensus 340 ~~~ll~~~~~~g~~~~a~~~~~~~~--------~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---------- 401 (801)
-.+|-..+-+.|+.++|.+.+..+. ..+..|+....--..+.|.+.|+.++-..+-..|..+
T Consensus 486 Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~ 565 (895)
T KOG2076|consen 486 RITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPR 565 (895)
T ss_pred hhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3445556678899999999988853 3345666666667778888888877644433333110
Q ss_pred ----------------CHHHHHHHHHHHHHcCCHHHHHH------HHHHHhCCCCCCCHh--hHHHHHHHHHhhcChhhH
Q 003710 402 ----------------NLVSWNAMIAAYVRNGQNREAME------LFQDLWSEPLKPDAM--TFASILPAYAEIATLSDS 457 (801)
Q Consensus 402 ----------------~~~~~~~li~~~~~~g~~~~A~~------l~~~m~~~g~~pd~~--t~~~ll~a~~~~~~~~~a 457 (801)
+...--.++.+-.+.++...... .+.--...|+.-|.. -+.-++..+++.+.+++|
T Consensus 566 ~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeA 645 (895)
T KOG2076|consen 566 NKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEA 645 (895)
T ss_pred HHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 00011111222211111110000 011111112222211 223344455556666666
Q ss_pred HHHHHHHHHhCC--CCch---HHHHHHHHHHHhcCCccccc-----------------hHHHHHHHHHHHHHcCCHHHHH
Q 003710 458 MQIHSLITKLGL--VSNI---YISNSIVYMYAKCGDLQTAR-----------------DVVSWNVIIMAYAIHGLGKISI 515 (801)
Q Consensus 458 ~~i~~~~~~~g~--~~~~---~~~~~li~~y~~~g~~~~A~-----------------d~~~~~~li~~~~~~g~~~~A~ 515 (801)
..+...+..... .++. ..-...+.+....+++..|. -...||...+.+.+.|+-.--.
T Consensus 646 l~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~ 725 (895)
T KOG2076|consen 646 LSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYL 725 (895)
T ss_pred HHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555543221 1111 11222233333334444443 2334555555555554433333
Q ss_pred HHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH-HHHHHHH----------hcCCH
Q 003710 516 QLFSEMREKGIKPNE--STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYG-CIIDLLG----------RIGNL 582 (801)
Q Consensus 516 ~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~----------~~g~~ 582 (801)
+++..... ..|+. ........-....+.+..|+..+-... ...|+...++ ||.-++. |.-..
T Consensus 726 R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~---~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i 800 (895)
T KOG2076|consen 726 RLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAF---RQNPDSPLINLCLGLAFIHLALQRRVSNRHAQI 800 (895)
T ss_pred HHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHH---HhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33333222 12222 111111122334667777777665554 3456633333 3333332 11123
Q ss_pred HHHHHHHHhCCC--CC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc------------hhHHHHHHHHHHcC
Q 003710 583 DQAKRFIEEMPS--AP--TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNT------------GCYVLLSNMYAEAG 646 (801)
Q Consensus 583 ~eA~~~~~~m~~--~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------------~~~~~l~~~y~~~g 646 (801)
-++..++++... .+ ...++-.+..++...|=+..|...++++++..|.+. .+-..|.-+|-..|
T Consensus 801 ~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SG 880 (895)
T KOG2076|consen 801 AQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSG 880 (895)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCC
Confidence 345555544322 22 345566688899999999999999999998876431 12235667899999
Q ss_pred CchHHHHHHHH
Q 003710 647 RWEDVEQIKAI 657 (801)
Q Consensus 647 ~~~~a~~~~~~ 657 (801)
+..-|..+.+.
T Consensus 881 n~~lArqil~k 891 (895)
T KOG2076|consen 881 NMQLARQILEK 891 (895)
T ss_pred cHHHHHHHHHh
Confidence 99988887753
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.42 E-value=5.4e-13 Score=137.44 Aligned_cols=254 Identities=13% Similarity=0.150 Sum_probs=113.3
Q ss_pred HHHHHHHccCChHHHHHHHhcC-C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhh
Q 003710 377 ALIDMYAGSGALKMTEKLFGSM-I----EKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEI 451 (801)
Q Consensus 377 ~Li~~y~k~g~~~~A~~~f~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 451 (801)
.+..++.+.|++++|.+++++. . ..|...|..+.......+++++|++.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4577788888999998888543 1 225556666666666778888888888888765432 34445555554 577
Q ss_pred cChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH
Q 003710 452 ATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKG-IKPNE 530 (801)
Q Consensus 452 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~ 530 (801)
++.++|.++.....+.. + +...|..++..+...|+++++.+++++..... ..++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~----------------------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 146 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--G----------------------DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSA 146 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-H
T ss_pred ccccccccccccccccc--c----------------------ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH
Confidence 77888877766554322 1 22345556666777788888899999977533 34566
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHH
Q 003710 531 STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTA 607 (801)
Q Consensus 531 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~ 607 (801)
..|..+...+.+.|+.++|.+.++...+. .|+ ......++.++...|+.+++.++++.... ..|+..|..+..+
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~ 223 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA 223 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 67888888899999999999999999854 676 78889999999999999998888876543 3567889999999
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 003710 608 SRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIME 659 (801)
Q Consensus 608 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 659 (801)
+...|+.+.|...++++++..|+|+.....+++++...|+.++|.+++...-
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999987654
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.42 E-value=8.8e-08 Score=100.99 Aligned_cols=405 Identities=10% Similarity=0.063 Sum_probs=285.5
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhc---CCCCcccHHHHHHHHHhCCChhHHHH
Q 003710 246 SIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMI---FPRNIVAWNAMVGGYVVNAHFLESFS 322 (801)
Q Consensus 246 ~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m---~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (801)
....+.+.|+-++...++.- +.+...+ -+|++..-++.|.+++++. ...+...|.+-...--.+|+.+...+
T Consensus 387 VelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 33444445565665555542 2223322 3344445556666666554 33455666665555556666666666
Q ss_pred HHHHH----HhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHccCChHHHHHHHh
Q 003710 323 CLRKM----LEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPN--VALETALIDMYAGSGALKMTEKLFG 396 (801)
Q Consensus 323 l~~~m----~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~k~g~~~~A~~~f~ 396 (801)
++.+- ... |+..+..-|..=..+|-..|..-.+..+....+..|++.. ..+++.-.+.+.+.+.++-|+.+|.
T Consensus 462 ii~rgl~~L~~n-gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 462 IIDRGLSELQAN-GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHhhc-ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 55443 333 7777777777777777777888888888777777777543 4566667777888888888888877
Q ss_pred cCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCch
Q 003710 397 SMIE---KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNI 473 (801)
Q Consensus 397 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 473 (801)
...+ .+...|...+..=-..|..++-..+|++.... ++-...-+.....-.-..|++..|+.++..+.+.. +.+.
T Consensus 541 ~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnse 618 (913)
T KOG0495|consen 541 HALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSE 618 (913)
T ss_pred HHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcH
Confidence 6543 35566776666666677888888888887764 22223333333444555788888888888887765 3366
Q ss_pred HHHHHHHHHHHhcCCccccc-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh
Q 003710 474 YISNSIVYMYAKCGDLQTAR-----------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCS 541 (801)
Q Consensus 474 ~~~~~li~~y~~~g~~~~A~-----------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~ 541 (801)
.++-+-+.......+++.|+ ....|.--+......++.++|++++++.++ .-|+-. .|..+...+-
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHH
Confidence 77777788888888888877 334566666667778899999999999888 567755 5777777888
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHH
Q 003710 542 ISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAE 618 (801)
Q Consensus 542 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~ 618 (801)
+.++++.|.+.|..=.+ .-|+ +..|-.|.++=-+.|.+-.|..++++... ..+...|...+..-.++|+.+.|+
T Consensus 697 ~~~~ie~aR~aY~~G~k---~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTK---KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHHHHHhccc---cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence 88999999988876442 3465 77888899999999999999999998754 356789999999999999999999
Q ss_pred HHHHHHHccCCC------------------------------CchhHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 003710 619 FAARHVLSSAQD------------------------------NTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGL 663 (801)
Q Consensus 619 ~~~~~~~~~~p~------------------------------~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 663 (801)
.+..++++-.|. |+.+....+.++....+++.|++.|.+....+.
T Consensus 774 ~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 774 LLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 988888776553 466677888999999999999999998876543
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=3.2e-10 Score=115.13 Aligned_cols=404 Identities=14% Similarity=0.086 Sum_probs=244.6
Q ss_pred HHHHHHcCCChhhHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHhcC
Q 003710 206 MIGGYCSVGDGVSSLVFFKEMQNCGLRYD-RFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMD-VMVQTSLVDMYGKC 283 (801)
Q Consensus 206 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~-~~~~~~li~~y~~~ 283 (801)
.-+-|.++|.+++|++.|.+..+ +.|| +..|...-.+|...|+++.+.+--...++. .|+ +-.+..-..++-..
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 34557778888888888888776 4677 444555555566778888777776666554 333 33344444566666
Q ss_pred CChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHH--------HHHHh--CCCCCCChhhHHHHHHHHhccCCh
Q 003710 284 GVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCL--------RKMLE--DDNLNPDCITIINLLPSCTKLGAL 353 (801)
Q Consensus 284 g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~--------~~m~~--~~g~~pd~~t~~~ll~~~~~~g~~ 353 (801)
|++++|+.= +|-.++..++-...-.--+.+++ .+-.+ ...+.|+.....+.+..+...-..
T Consensus 197 g~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 197 GKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred ccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 777766531 12222222222221111122222 22111 123455555544444433211000
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc-CChHHHHHHHhcC-------CCC---CHH------HHHHHHHHHHHc
Q 003710 354 LEGKSIHGYAIRKGFLPNVALETALIDMYAGS-GALKMTEKLFGSM-------IEK---NLV------SWNAMIAAYVRN 416 (801)
Q Consensus 354 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~-g~~~~A~~~f~~~-------~~~---~~~------~~~~li~~~~~~ 416 (801)
.+...+-..|...-+.+=..|.+. ..+..|...+.+- ... |.. +.+....-+.-.
T Consensus 268 --------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 268 --------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred --------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 000000001111111111111111 1222222222211 111 111 111111223446
Q ss_pred CCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHH
Q 003710 417 GQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVV 496 (801)
Q Consensus 417 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~ 496 (801)
|+.-.|.+-|+..+.....++.. |.-+-.+|....+.++....|+...+.. +-+..+|..-..++.
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~f------------ 405 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRF------------ 405 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHH------------
Confidence 88889999999988765444432 6666677888999999999999998765 334444443333333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 003710 497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNE-STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIID 574 (801)
Q Consensus 497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 574 (801)
-.+++++|+.=|++.+. +.|+. ..|.-+-.+..+.+.+++++..|++..+++ |+ ++.|+....
T Consensus 406 ----------lL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF---P~~~Evy~~fAe 470 (606)
T KOG0547|consen 406 ----------LLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF---PNCPEVYNLFAE 470 (606)
T ss_pred ----------HHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCchHHHHHHH
Confidence 34566667999999887 66754 467777778888999999999999998764 55 899999999
Q ss_pred HHHhcCCHHHHHHHHHhCCC-CCC---------cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHH
Q 003710 575 LLGRIGNLDQAKRFIEEMPS-APT---------ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAE 644 (801)
Q Consensus 575 ~~~~~g~~~eA~~~~~~m~~-~p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 644 (801)
.+..++++++|.+.++.... +|+ +.+-.+++-.-.+ +|+..|+.+++++++++|....+|..|+.+-.+
T Consensus 471 iLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ 549 (606)
T KOG0547|consen 471 ILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQ 549 (606)
T ss_pred HHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 99999999999999987643 333 2222333333333 899999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHH
Q 003710 645 AGRWEDVEQIKAIMEK 660 (801)
Q Consensus 645 ~g~~~~a~~~~~~m~~ 660 (801)
.|+.++|.++|+.-..
T Consensus 550 ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 550 RGKIDEAIELFEKSAQ 565 (606)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 9999999999987543
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.4e-09 Score=108.33 Aligned_cols=354 Identities=13% Similarity=0.134 Sum_probs=253.9
Q ss_pred CCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHH--H
Q 003710 265 GLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITII--N 342 (801)
Q Consensus 265 g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~--~ 342 (801)
+...|...+-..--.+-+.|....|...|......-+..|.+.+.-..-.-+.+.+..+.. +...|..-+. -
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~------~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV------GLPSDMHWMKKFF 232 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh------cCcccchHHHHHH
Confidence 4445555444444556677888889888888766555556555443322222222222211 2222222111 2
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCC------CHHHHHHHHHHHHHc
Q 003710 343 LLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEK------NLVSWNAMIAAYVRN 416 (801)
Q Consensus 343 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~ 416 (801)
+..++....+.+++.+-.......|++.+...-+....++-...+++.|+.+|+++... |..+|+.++ |+++
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHh
Confidence 34466666788888888888888898888877777777777888999999999998654 445666544 3443
Q ss_pred CCHHH---HHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc
Q 003710 417 GQNRE---AMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR 493 (801)
Q Consensus 417 g~~~~---A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 493 (801)
.+..- |..+++ -...+ ..|...+-+-|+-.++.++|...|+...+.+-.
T Consensus 311 ~~skLs~LA~~v~~---idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~----------------------- 362 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSN---IDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLNPK----------------------- 362 (559)
T ss_pred hhHHHHHHHHHHHH---hccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-----------------------
Confidence 33221 222221 11233 346667777788888999999999999886522
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 003710 494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKP-NESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGC 571 (801)
Q Consensus 494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 571 (801)
-...|+.|..-|....+...|++-++..++ +.| |-..|-.|..+|.-.+...-|+-+|+... .++|+ ...|.+
T Consensus 363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~a 437 (559)
T KOG1155|consen 363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVA 437 (559)
T ss_pred hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHH
Confidence 235799999999999999999999999998 555 56689999999999999999999999876 56776 899999
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHc-------cCCCCchhHHHHHHHH
Q 003710 572 IIDLLGRIGNLDQAKRFIEEMPSAP--TARIWGALLTASRKNNDIVSAEFAARHVLS-------SAQDNTGCYVLLSNMY 642 (801)
Q Consensus 572 li~~~~~~g~~~eA~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~y 642 (801)
|.++|.+.++++||.+.|++...-. +...+..|...+.+.++.++|...+++-++ .+|....+-..|+.-+
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f 517 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYF 517 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 9999999999999999999876433 347788899999999999999999998886 2343444556788999
Q ss_pred HHcCCchHHHHHHHHHH
Q 003710 643 AEAGRWEDVEQIKAIME 659 (801)
Q Consensus 643 ~~~g~~~~a~~~~~~m~ 659 (801)
.+.++|++|..+-....
T Consensus 518 ~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 518 KKMKDFDEASYYATLVL 534 (559)
T ss_pred HhhcchHHHHHHHHHHh
Confidence 99999999988776544
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=1.7e-10 Score=122.04 Aligned_cols=198 Identities=12% Similarity=0.053 Sum_probs=143.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC-CHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHH
Q 003710 402 NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKP-DAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIV 480 (801)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 480 (801)
.+.+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+-
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlG----------------------------------- 462 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLG----------------------------------- 462 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcC-----------------------------------
Confidence 467888888888888888888888887765 333 233333222
Q ss_pred HHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 003710 481 YMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSISGMVDEGWNYFDSMRKD 559 (801)
Q Consensus 481 ~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 559 (801)
.-+.....++.|...|+..+. +.|... .|..|...|.+.++++.|.-.|+...
T Consensus 463 ----------------------hE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~-- 516 (638)
T KOG1126|consen 463 ----------------------HESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV-- 516 (638)
T ss_pred ----------------------ChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhh--
Confidence 223334455566667766654 445443 56677778888888888888888765
Q ss_pred cCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHH
Q 003710 560 YGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYV 636 (801)
Q Consensus 560 ~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 636 (801)
.+.|. .....++...+.+.|+.|+|++++++... ..|+..----...+...++.++|...+|++.++-|++..+|.
T Consensus 517 -~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~ 595 (638)
T KOG1126|consen 517 -EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFA 595 (638)
T ss_pred -cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHH
Confidence 56776 66777788888888888888888887642 223333333444566678999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCC
Q 003710 637 LLSNMYAEAGRWEDVEQIKAIMEKEGL 663 (801)
Q Consensus 637 ~l~~~y~~~g~~~~a~~~~~~m~~~g~ 663 (801)
+++.+|-+.|+.+.|..-|..+.+...
T Consensus 596 llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 596 LLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 999999999999999999988876543
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=2.5e-07 Score=94.05 Aligned_cols=501 Identities=12% Similarity=0.078 Sum_probs=305.7
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHH
Q 003710 98 DTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIV 177 (801)
Q Consensus 98 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 177 (801)
+...|-.....-...+++..|..+|++.+.-. ..+...|-.-+..=.+...+..|+.+++..+..-...|. .|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHH
Confidence 34445444444555667777888888776533 233334444445545667777788888877765433333 2333444
Q ss_pred HHHhcCCchHHHHhhccCC--CCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHH
Q 003710 178 MYMKLGCVECAERMFDEMP--VRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGK 255 (801)
Q Consensus 178 ~y~~~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 255 (801)
+=-..|++..|+++|++-. +||.-.|++.|.-=.+-..++.|..+|++..- +.|+..+|.--.+.=-+.|....++
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 4455688888888887744 78888888888888888888888888888765 4588888877777777788888888
Q ss_pred HHHHHHHHh-CC-CCchHHHHHHHHHHhcCCChHHHHHHHhhcCC----C-CcccHHHHHHHHHhCCCh---hHHHHHHH
Q 003710 256 EIHCQVIKS-GL-EMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP----R-NIVAWNAMVGGYVVNAHF---LESFSCLR 325 (801)
Q Consensus 256 ~l~~~~~~~-g~-~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~----~-~~~~~~~li~~~~~~g~~---~~A~~l~~ 325 (801)
.++...++. |- ..+..++++....=.++..++.|.-+|.-..+ . ....|.....-=-+.|+. ++++--=+
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 888877764 21 11223344444444455666666666654321 1 111222222221222221 22221111
Q ss_pred HHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCC----
Q 003710 326 KMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEK---- 401 (801)
Q Consensus 326 ~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---- 401 (801)
+++ ++.+++. -+.|-.+|--.++.-...|+.+..+++|++....
T Consensus 308 k~q-------------------------------YE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~ 355 (677)
T KOG1915|consen 308 KFQ-------------------------------YEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPA 355 (677)
T ss_pred hhH-------------------------------HHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCch
Confidence 111 1112221 1234444445555555566666666666655221
Q ss_pred -CHHHHHHHHH--------HHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHH----hhcChhhHHHHHHHHHHhC
Q 003710 402 -NLVSWNAMIA--------AYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYA----EIATLSDSMQIHSLITKLG 468 (801)
Q Consensus 402 -~~~~~~~li~--------~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g 468 (801)
.-..|.-.|- .=....+.+.+.++|+..++ =++-..+||.-+=-.++ +..++..|+++++.++ |
T Consensus 356 ~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G 432 (677)
T KOG1915|consen 356 SEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--G 432 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--c
Confidence 1122322221 11245788889999988887 24446778876544443 4678899999988776 4
Q ss_pred CCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 003710 469 LVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDE 548 (801)
Q Consensus 469 ~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 548 (801)
..|...++...|++-.+.+ +++..-++|++.++-+ +-|-.+|.....-=...|+.+.
T Consensus 433 ~cPK~KlFk~YIelElqL~----------------------efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 433 KCPKDKLFKGYIELELQLR----------------------EFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred cCCchhHHHHHHHHHHHHh----------------------hHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHH
Confidence 5677777766666555544 4555589999999854 2355677777777777899999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCcchHHHHHHHHH-----hcC----------
Q 003710 549 GWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APTARIWGALLTASR-----KNN---------- 612 (801)
Q Consensus 549 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~~~-----~~g---------- 612 (801)
|..+|+...+...+..-...|-+.|+.=...|.++.|..+++++.. .+...+|.++..--. ..+
T Consensus 490 aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~ 569 (677)
T KOG1915|consen 490 ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITD 569 (677)
T ss_pred HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcch
Confidence 9999999887533333366788888888999999999999998875 356668888776543 233
Q ss_pred -CHHHHHHHHHHHHcc----CCCC--chhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 613 -DIVSAEFAARHVLSS----AQDN--TGCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 613 -~~~~a~~~~~~~~~~----~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
+...|..+++.+... .|.. ...+...-++=...|.-.+...+-+.|.+
T Consensus 570 ~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 570 ENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred hHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 556777788777642 3321 12233344455666666666666666643
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.27 E-value=4.4e-09 Score=114.23 Aligned_cols=289 Identities=11% Similarity=0.024 Sum_probs=155.8
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHH
Q 003710 313 VNAHFLESFSCLRKMLEDDNLNPDCI-TIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMT 391 (801)
Q Consensus 313 ~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 391 (801)
..|+++.|.+.+.+..+. .|+.. .+...-.+....|+.+.+.+.+..+.+..-.+...+.-.....+...|+.+.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 356666776666655432 34432 22333445556677777777777666543222223444456777788888888
Q ss_pred HHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHH---HhhcChhhHHHHHHHHH
Q 003710 392 EKLFGSMIE---KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAY---AEIATLSDSMQIHSLIT 465 (801)
Q Consensus 392 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~---~~~~~~~~a~~i~~~~~ 465 (801)
...++.+.+ .+...+..+...|.+.|++++|.+++..+.+.++.++......-..+. ...+..+.+.+.+..+.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888887743 255677788888888899999999988888876443222111111111 11112222222332222
Q ss_pred HhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhc
Q 003710 466 KLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTF---VSLLSSCSI 542 (801)
Q Consensus 466 ~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~ 542 (801)
+.. |+ +.-.+...+..++..+...|+.++|++++++..+. .||.... .........
T Consensus 253 ~~~--p~-----------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~ 311 (409)
T TIGR00540 253 KNQ--PR-----------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLK 311 (409)
T ss_pred HHC--CH-----------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcC
Confidence 211 10 00002334455555666666666668888887773 4554421 111112233
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCcchHHHHHHHHHhcCCHHHHHH
Q 003710 543 SGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEE--M-PSAPTARIWGALLTASRKNNDIVSAEF 619 (801)
Q Consensus 543 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~a~~ 619 (801)
.++.+.+.+.++...+...-.|+.....+|..++.+.|++++|.+.|+. . ...|+...+..|...+...|+.+.|.+
T Consensus 312 ~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 312 PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4666667666666654322222214455666666666666666666662 2 224555555555555555555555555
Q ss_pred HHHHHH
Q 003710 620 AARHVL 625 (801)
Q Consensus 620 ~~~~~~ 625 (801)
++++.+
T Consensus 392 ~~~~~l 397 (409)
T TIGR00540 392 MRQDSL 397 (409)
T ss_pred HHHHHH
Confidence 555543
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=3.8e-09 Score=106.02 Aligned_cols=408 Identities=12% Similarity=0.111 Sum_probs=241.5
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchHHHH-HHHHHHhcCCChHHHHHHHhhcCC--CC------cccHHHHHHHHHhCCC
Q 003710 246 SIEGCLKIGKEIHCQVIKSGLEMDVMVQT-SLVDMYGKCGVVDYAERLFNMIFP--RN------IVAWNAMVGGYVVNAH 316 (801)
Q Consensus 246 ~~~~~~~~a~~l~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A~~lf~~m~~--~~------~~~~~~li~~~~~~g~ 316 (801)
.......+|...++-+++..+-|+..... .+-+.|.+...+.+|.++++.... |+ +...|.+--.+.+.|+
T Consensus 212 ~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gq 291 (840)
T KOG2003|consen 212 EANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQ 291 (840)
T ss_pred hhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEeccc
Confidence 33445556666666666666655543321 223456666677777777654421 11 1223333445677788
Q ss_pred hhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCC------------CchhHHHHHHH----
Q 003710 317 FLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFL------------PNVALETALID---- 380 (801)
Q Consensus 317 ~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~------------~~~~~~~~Li~---- 380 (801)
+++|+.-|...++. .|+..+-..++-.+-..|+-+..++.|..|+..... |+....|--|.
T Consensus 292 y~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~l 368 (840)
T KOG2003|consen 292 YDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHL 368 (840)
T ss_pred chhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHH
Confidence 88888888777654 677776666666666677777777777777654222 22222222221
Q ss_pred -HHHccC--ChHHHH----HHHhcCCCCCHH---HHH------------------HHHHHHHHcCCHHHHHHHHHHHhCC
Q 003710 381 -MYAGSG--ALKMTE----KLFGSMIEKNLV---SWN------------------AMIAAYVRNGQNREAMELFQDLWSE 432 (801)
Q Consensus 381 -~y~k~g--~~~~A~----~~f~~~~~~~~~---~~~------------------~li~~~~~~g~~~~A~~l~~~m~~~ 432 (801)
-.-+.. +.+++. ++..-...++-. -|. .-..-|.++|+++.|+++++-+...
T Consensus 369 k~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~k 448 (840)
T KOG2003|consen 369 KNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKK 448 (840)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc
Confidence 111111 111111 122222222211 111 0123478899999999999888655
Q ss_pred CCCCCHhhHHH--HHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc---------hHH---HH
Q 003710 433 PLKPDAMTFAS--ILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR---------DVV---SW 498 (801)
Q Consensus 433 g~~pd~~t~~~--ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~---------d~~---~~ 498 (801)
.-+.-...-+. .|.-.-...++..|.+.-+..+... .-+......-.+.-...|+++.|. |.. ..
T Consensus 449 dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~eal 527 (840)
T KOG2003|consen 449 DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEAL 527 (840)
T ss_pred cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHH
Confidence 43322222222 2222222334555555555444211 001111000111122345555554 222 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHH
Q 003710 499 NVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLG 577 (801)
Q Consensus 499 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~ 577 (801)
-.+.-.+-..|+.++|++.|-++..- +.-+...+.-+.+.|-...+...|++++.+.. .+.|+ +.+.+-|.++|-
T Consensus 528 fniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~---slip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 528 FNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN---SLIPNDPAILSKLADLYD 603 (840)
T ss_pred HHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc---ccCCCCHHHHHHHHHHhh
Confidence 22334566789999999999887542 23355567777788888889999999988775 45565 899999999999
Q ss_pred hcCCHHHHHHHHHh-CCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003710 578 RIGNLDQAKRFIEE-MPS-APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIK 655 (801)
Q Consensus 578 ~~g~~~eA~~~~~~-m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 655 (801)
+.|+-.+|.+..-. ..- ..+..+..-|...|....-.+.+...++++--+.|....-...++..+.+.|++..|..++
T Consensus 604 qegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 604 QEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred cccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 99999999987544 332 3455666666667777777889999999998888887666667777888999999999999
Q ss_pred HHHHHC
Q 003710 656 AIMEKE 661 (801)
Q Consensus 656 ~~m~~~ 661 (801)
+....+
T Consensus 684 k~~hrk 689 (840)
T KOG2003|consen 684 KDIHRK 689 (840)
T ss_pred HHHHHh
Confidence 888654
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=1.9e-10 Score=121.71 Aligned_cols=161 Identities=12% Similarity=0.121 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH-
Q 003710 494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKP-NESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGC- 571 (801)
Q Consensus 494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~- 571 (801)
...+|-++.++|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+... ..++.||++
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYnAw 492 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYNAW 492 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhHHH
Confidence 567999999999999999999999999988 677 67789988888888999999999999754 456667776
Q ss_pred --HHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCC
Q 003710 572 --IIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGR 647 (801)
Q Consensus 572 --li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 647 (801)
|.-.|.+.++++.|+-.|++... .| +.++...+...+.+.|+.|+|++++++++-++|.|+-.-...+.++...++
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 45679999999999999998864 45 455666677778899999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHC
Q 003710 648 WEDVEQIKAIMEKE 661 (801)
Q Consensus 648 ~~~a~~~~~~m~~~ 661 (801)
+++|...++++++-
T Consensus 573 ~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 573 YVEALQELEELKEL 586 (638)
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999999873
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=4.1e-07 Score=92.52 Aligned_cols=383 Identities=13% Similarity=0.110 Sum_probs=263.5
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhc--CCCCcccHHHHHHHHHhCCChhHHHHHH
Q 003710 247 IEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMI--FPRNIVAWNAMVGGYVVNAHFLESFSCL 324 (801)
Q Consensus 247 ~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m--~~~~~~~~~~li~~~~~~g~~~~A~~l~ 324 (801)
..|++..|+++|+.-.+ ..|+...+++.|+.=.+...++.|+.++++. ..|++.+|--....=.++|+...|..+|
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 35666667777666554 3677777777777777777788888887765 5577777777777777777777777777
Q ss_pred HHHHhCCCCCCChhhHHHHHHHHh----ccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHccCChH---HHHHHHh
Q 003710 325 RKMLEDDNLNPDCITIINLLPSCT----KLGALLEGKSIHGYAIRKGFLP-NVALETALIDMYAGSGALK---MTEKLFG 396 (801)
Q Consensus 325 ~~m~~~~g~~pd~~t~~~ll~~~~----~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~---~A~~~f~ 396 (801)
....+. --|...-..++.+++ ....++.|.-++...++.--.. ....|..+...=-+-|+.. ++.---.
T Consensus 231 erAie~---~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 231 ERAIEF---LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 776643 222333334444444 3456788888888887753221 1445555555545556544 3332222
Q ss_pred -----cCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCH-------hhHHHHHHHH---HhhcChhhHH
Q 003710 397 -----SMIEK---NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDA-------MTFASILPAY---AEIATLSDSM 458 (801)
Q Consensus 397 -----~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~---~~~~~~~~a~ 458 (801)
.+... |-.+|--.+..--..|+.+...++|++.... ++|-. ..|..+=-+| ....+++.++
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 22222 5567777777777889999999999999864 56632 2233332333 3478899999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003710 459 QIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLS 538 (801)
Q Consensus 459 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 538 (801)
+++...++ -++....++.-+=-||+ .--.++.+...|-+++-..+ |.-|-..+|...|.
T Consensus 387 ~vyq~~l~-lIPHkkFtFaKiWlmyA------------------~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 387 QVYQACLD-LIPHKKFTFAKIWLMYA------------------QFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHh-hcCcccchHHHHHHHHH------------------HHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHH
Confidence 99999888 24445556655444443 22344556666677776655 57899999999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC----cchHHHHHHHHHhcCC
Q 003710 539 SCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPT----ARIWGALLTASRKNND 613 (801)
Q Consensus 539 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~ 613 (801)
.=.+.+.+|....+++...+ ..|. ..+|.-...+=...|+.+.|..+|+-...+|. ...|.+.+.--...|.
T Consensus 446 lElqL~efDRcRkLYEkfle---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E 522 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE 522 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence 99999999999999999874 4565 77888888888899999999999998877664 4677777777788999
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHHHHHHH-----HcC-----------CchHHHHHHHHHHH
Q 003710 614 IVSAEFAARHVLSSAQDNTGCYVLLSNMYA-----EAG-----------RWEDVEQIKAIMEK 660 (801)
Q Consensus 614 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~-----~~g-----------~~~~a~~~~~~m~~ 660 (801)
++.|..+++++++..+... +++..+..-. +.| ....|+++|+....
T Consensus 523 ~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 523 FEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 9999999999998877543 5665555443 334 55678888877643
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.25 E-value=6.2e-09 Score=112.37 Aligned_cols=86 Identities=10% Similarity=0.105 Sum_probs=53.4
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHH--HHHHHHHHccCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHH
Q 003710 348 TKLGALLEGKSIHGYAIRKGFLPNVALE--TALIDMYAGSGALKMTEKLFGSMIE---KNLVSWNAMIAAYVRNGQNREA 422 (801)
Q Consensus 348 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~--~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 422 (801)
...|+.+.+.+.+..+.+. .|+.... -.....+...|+.+.|...++++.+ .+......+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4445555555555555432 2332222 2335566777777777777776643 2556677777888888888888
Q ss_pred HHHHHHHhCCCCC
Q 003710 423 MELFQDLWSEPLK 435 (801)
Q Consensus 423 ~~l~~~m~~~g~~ 435 (801)
.+++..+.+.+..
T Consensus 207 ~~~l~~l~k~~~~ 219 (398)
T PRK10747 207 LDILPSMAKAHVG 219 (398)
T ss_pred HHHHHHHHHcCCC
Confidence 8888888776544
No 47
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.1e-11 Score=89.38 Aligned_cols=50 Identities=30% Similarity=0.627 Sum_probs=47.2
Q ss_pred CCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 003710 198 RDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISI 247 (801)
Q Consensus 198 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 247 (801)
||+++||++|.+|++.|++++|+++|++|++.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-08 Score=105.41 Aligned_cols=266 Identities=14% Similarity=0.070 Sum_probs=205.0
Q ss_pred CCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHH
Q 003710 367 GFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNL---VSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFAS 443 (801)
Q Consensus 367 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 443 (801)
|..-+..+.....+-+...+++.+..++++.+.+.|+ ..+..-|.++...|+..+-+.+=.+|.+. .+-...+|-+
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 3445666667777778888889999888888866544 34555677888888888877777777764 2334678888
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003710 444 ILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMRE 523 (801)
Q Consensus 444 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 523 (801)
+---|...|+.++|++.+....... |. + ...|-.....|+-.|..++|+..+...-+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD--~~----------------f-----gpaWl~fghsfa~e~EhdQAmaaY~tAar 374 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD--PT----------------F-----GPAWLAFGHSFAGEGEHDQAMAAYFTAAR 374 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC--cc----------------c-----cHHHHHHhHHhhhcchHHHHHHHHHHHHH
Confidence 8777777888999998888776432 11 1 13588889999999999999988877655
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--------
Q 003710 524 KGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-------- 594 (801)
Q Consensus 524 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-------- 594 (801)
. ++-...-+.-+.--|.+.++.+.|.++|.+.. ++-|+ +..++-+.-+....+.+.+|..+|+....
T Consensus 375 l-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e 450 (611)
T KOG1173|consen 375 L-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE 450 (611)
T ss_pred h-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc
Confidence 2 11122224445556888999999999999875 77786 77888888888889999999999887542
Q ss_pred CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 595 AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 595 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
++ -..+|+.|..+|++.+..++|...+++++.+.|.+..+|..++-+|...|+.+.|...|.+...
T Consensus 451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 11 2345777888999999999999999999999999999999999999999999999999987654
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.23 E-value=3.6e-09 Score=114.20 Aligned_cols=251 Identities=12% Similarity=0.047 Sum_probs=113.1
Q ss_pred HccCChHHHHHHHhcCCCC--CHHHHH--HHHHHHHHcCCHHHHHHHHHHHhCCCCCCC-HhhHHHHHHHHHhhcChhhH
Q 003710 383 AGSGALKMTEKLFGSMIEK--NLVSWN--AMIAAYVRNGQNREAMELFQDLWSEPLKPD-AMTFASILPAYAEIATLSDS 457 (801)
Q Consensus 383 ~k~g~~~~A~~~f~~~~~~--~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a 457 (801)
.+.|+.+.|...|.++.+. +....- .....+...|++++|...++++.+.. |+ ...+..+...+.+.|+++.+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHH
Confidence 4555666666555555322 111111 12344555566666666665555432 32 33344444555555555555
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003710 458 MQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLL 537 (801)
Q Consensus 458 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 537 (801)
.+++..+.+.+..++.. ...+- ...|..++.......+.+...++++.+-+. .+.+......+.
T Consensus 207 ~~~l~~l~k~~~~~~~~-~~~l~--------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A 270 (398)
T PRK10747 207 LDILPSMAKAHVGDEEH-RAMLE--------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMA 270 (398)
T ss_pred HHHHHHHHHcCCCCHHH-HHHHH--------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHH
Confidence 55555555544322111 11000 011222222222333334444444443221 223444455555
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCc-chHHHHHHHHHhcCCHH
Q 003710 538 SSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APTA-RIWGALLTASRKNNDIV 615 (801)
Q Consensus 538 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~-~~~~~ll~~~~~~g~~~ 615 (801)
.++...|+.++|.+.++...+ ..|+.... ++.+....++.+++.+.+++... .|+. ..+.++...|...|+++
T Consensus 271 ~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~ 345 (398)
T PRK10747 271 EHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQ 345 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 555555555555555555443 12332111 11122233555555555554432 2332 23445555555555555
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 003710 616 SAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAI 657 (801)
Q Consensus 616 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 657 (801)
.|+..++++++..|++ ..|..|+.++.+.|+.++|..++++
T Consensus 346 ~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 346 EASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555555543 2344555555555555555555543
No 50
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=2.7e-11 Score=87.42 Aligned_cols=50 Identities=26% Similarity=0.639 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHh
Q 003710 401 KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAE 450 (801)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 450 (801)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.20 E-value=3.1e-06 Score=89.59 Aligned_cols=302 Identities=13% Similarity=0.101 Sum_probs=173.7
Q ss_pred HHHHHHHcCCChHHHHHHHhhCC-----CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcC
Q 003710 73 RALQELVSSGSMESACYLFEKMS-----YLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGL 147 (801)
Q Consensus 73 ~l~~~~~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 147 (801)
.-+..+.++|++..-++.|++.. ......|...|......+-++-++.+|++..+- ++..-.--|.-++..
T Consensus 107 ~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 107 DYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhc
Confidence 45566667888888888888743 234557888888888888888899999888753 333356667777888
Q ss_pred CChhHHHHHHHHHHHhC------CCCchhhHhHHHHHHHhcCC---chHHHHhhccCCCC--C--cccHHHHHHHHHcCC
Q 003710 148 LYLSEGEKVHGSLFKSG------LNSDVYVCNSLIVMYMKLGC---VECAERMFDEMPVR--D--TVSWNSMIGGYCSVG 214 (801)
Q Consensus 148 ~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~m~~~--d--~~~~~~li~~~~~~g 214 (801)
+++++|.+.++.++... ...+-..|+.+.+..++.-+ --....+++.+..+ | ...|++|..-|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 88888888887776321 14455667777776665432 22344455555432 3 346899999999999
Q ss_pred ChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhcCCChHHHHHHH
Q 003710 215 DGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEM-DVMVQTSLVDMYGKCGVVDYAERLF 293 (801)
Q Consensus 215 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~lf 293 (801)
.+++|.++|++-...- .+..-|+.+.++|+.......+..+- .....+..+ +.. +++-...-|
T Consensus 263 ~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~~~~a~~ 326 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLELHMARF 326 (835)
T ss_pred hhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHHHHHHHH
Confidence 9999999998876542 33445666666665433222221111 000011111 110 112222222
Q ss_pred hhc---------------CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChh------hHHHHHHHHhccCC
Q 003710 294 NMI---------------FPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCI------TIINLLPSCTKLGA 352 (801)
Q Consensus 294 ~~m---------------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~------t~~~ll~~~~~~g~ 352 (801)
+.+ ...++..|..-+.. ..|+..+-...|.+..+. +.|... .+..+-+.|-..|+
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHHHHHHhcCc
Confidence 222 11244445444432 345666666666666553 333322 24444555556667
Q ss_pred hHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHccCChHHHHHHHhcC
Q 003710 353 LLEGKSIHGYAIRKGFLPN---VALETALIDMYAGSGALKMTEKLFGSM 398 (801)
Q Consensus 353 ~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~~ 398 (801)
++.|+.+|+...+..++.- ..+|-...++=.+..+++.|.++.+..
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 7777777766666544332 334444445555555666666665543
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.20 E-value=1.4e-10 Score=119.57 Aligned_cols=253 Identities=15% Similarity=0.096 Sum_probs=97.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCcccHH-HHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCC
Q 003710 106 IRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYP-FVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGC 184 (801)
Q Consensus 106 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 184 (801)
...+.+.|++++|++++.+......+|+...|- .+...+...++.+.|.+.++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 455556677777777775443332133333333 3333445567777777777777766532 55566677776 67788
Q ss_pred chHHHHhhccCC--CCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCChHHHHHHHHHH
Q 003710 185 VECAERMFDEMP--VRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCG-LRYDRFSLISALGAISIEGCLKIGKEIHCQV 261 (801)
Q Consensus 185 ~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~ 261 (801)
+++|.++++..- .++...+..++..+.+.++++++.+++++..... ...+...|......+.+.|+.++|...+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888776653 3466677888888888899999988888876533 3445566667777778888888888888888
Q ss_pred HHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhc---CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChh
Q 003710 262 IKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMI---FPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCI 338 (801)
Q Consensus 262 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 338 (801)
++.. +.|..+.+.++..+...|+.+++.++++.. .+.|...|..+..+|...|+.++|+..|++..+. .+.|..
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~ 249 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPL 249 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--cccccc
Confidence 8874 235777888888899889888877776655 3456778888888888889999999999888764 222444
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHH
Q 003710 339 TIINLLPSCTKLGALLEGKSIHGYA 363 (801)
Q Consensus 339 t~~~ll~~~~~~g~~~~a~~~~~~~ 363 (801)
+...+..++...|+.++|.++...+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 5555556666666666666555443
No 53
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.6e-07 Score=93.95 Aligned_cols=350 Identities=12% Similarity=0.120 Sum_probs=223.3
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHH-HHHHHHHhCCChhHHHH
Q 003710 244 AISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWN-AMVGGYVVNAHFLESFS 322 (801)
Q Consensus 244 a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~-~li~~~~~~g~~~~A~~ 322 (801)
...+.|....|...+-..+..- + ..|.+-+....-..+.+.+..+-...+..+...-. -+..+|-...+.++++.
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~~-P---~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~ 248 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNRY-P---WFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQ 248 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhcC-C---cchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777666655321 2 22333333333334444444443333332111111 12345555567788888
Q ss_pred HHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHccCC--hH-HHHHHHhc
Q 003710 323 CLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGF--LPNVALETALIDMYAGSGA--LK-MTEKLFGS 397 (801)
Q Consensus 323 l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~k~g~--~~-~A~~~f~~ 397 (801)
-....... |+.-+...-+..-.+.-...++++|..+|+++.+... -.|..+|+.++ |.+..+ +. -|..++ .
T Consensus 249 k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~LA~~v~-~ 324 (559)
T KOG1155|consen 249 KKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYLAQNVS-N 324 (559)
T ss_pred HHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHHHHHHH-H
Confidence 77777766 6655554444444455567899999999999988742 12566666654 333332 21 222332 2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCC-HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHH
Q 003710 398 MIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPD-AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYIS 476 (801)
Q Consensus 398 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 476 (801)
+.+--+.|...+..-|.-.++.++|...|+..++. .|. ...|+.+-.-|...++...|.+-++.+++.. |.
T Consensus 325 idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--p~---- 396 (559)
T KOG1155|consen 325 IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--PR---- 396 (559)
T ss_pred hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--ch----
Confidence 22223456666777788889999999999998764 444 3445566667888888888888888777643 21
Q ss_pred HHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHH
Q 003710 477 NSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDS 555 (801)
Q Consensus 477 ~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 555 (801)
|-..|-.|..+|...+...=|+-.|++..+ ++|+ ...|.+|...|.+.++.++|++.|..
T Consensus 397 -----------------DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 397 -----------------DYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred -----------------hHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 567788888888888888888888888887 5664 55788888888889999999998888
Q ss_pred hHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC------CCCcchH---HHHHHHHHhcCCHHHHHHHHHHHHc
Q 003710 556 MRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS------APTARIW---GALLTASRKNNDIVSAEFAARHVLS 626 (801)
Q Consensus 556 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~------~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~ 626 (801)
...- -..+...|..|.++|-+.++.++|..++++-.. ..+..+. .-|..-+.+.+++++|...+.+++.
T Consensus 458 ai~~--~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 458 AILL--GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHhc--cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 7752 233567888889999999999988887765432 1222111 1244556778888888887777776
Q ss_pred cCCC
Q 003710 627 SAQD 630 (801)
Q Consensus 627 ~~p~ 630 (801)
.++.
T Consensus 536 ~~~e 539 (559)
T KOG1155|consen 536 GETE 539 (559)
T ss_pred CCch
Confidence 6443
No 54
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.19 E-value=1.1e-08 Score=111.19 Aligned_cols=296 Identities=12% Similarity=-0.000 Sum_probs=176.3
Q ss_pred hHHHHHHHHH--cCCChhHHHHHHHHHHHCCCCCCccc-HHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHH
Q 003710 101 IWNVVIRGFV--DNGLFQEAVEFHHRMVCEGFKADYFT-YPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIV 177 (801)
Q Consensus 101 ~~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 177 (801)
....+.+++. ..|+++.|.+.+.+..+. .|+... +-....+....|+.+.+.+.+....+....+...+.-....
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence 3444555554 468888888888776554 344332 23334555667888888888877766532222234444566
Q ss_pred HHHhcCCchHHHHhhccCCC--C-CcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHH
Q 003710 178 MYMKLGCVECAERMFDEMPV--R-DTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIG 254 (801)
Q Consensus 178 ~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 254 (801)
.+...|+++.|...++.+.+ | +...+..+...+.+.|++++|.+++..+.+.++.+.. .+..+-.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~----------- 229 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ----------- 229 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------
Confidence 67777788877777777652 2 4556677777777788888787777777766543221 1111000
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 003710 255 KEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDD 331 (801)
Q Consensus 255 ~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 331 (801)
..+..++..-......+...+.++..+. .+...+..+...+...|+.++|.+++++..+.
T Consensus 230 ----------------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~- 292 (409)
T TIGR00540 230 ----------------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK- 292 (409)
T ss_pred ----------------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh-
Confidence 0011111111111223333444444433 35566666667777777777777777777653
Q ss_pred CCCCChhhHH-HHHH--HHhccCChHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHccCChHHHHHHHh--cC--CCCC
Q 003710 332 NLNPDCITII-NLLP--SCTKLGALLEGKSIHGYAIRKGFLPNV--ALETALIDMYAGSGALKMTEKLFG--SM--IEKN 402 (801)
Q Consensus 332 g~~pd~~t~~-~ll~--~~~~~g~~~~a~~~~~~~~~~g~~~~~--~~~~~Li~~y~k~g~~~~A~~~f~--~~--~~~~ 402 (801)
.||..... .++. .....++.+.+.+.++...+.. +-|. ....++...+.+.|++++|.+.|+ .. ..|+
T Consensus 293 --~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 293 --LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred --CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence 34443210 1222 2223456666666666665542 2334 566788888888899999999888 34 3567
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003710 403 LVSWNAMIAAYVRNGQNREAMELFQDLW 430 (801)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~l~~~m~ 430 (801)
...+..+...+.+.|+.++|.+++++-.
T Consensus 370 ~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 370 ANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777788888889999999988888753
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=7.6e-08 Score=93.38 Aligned_cols=298 Identities=12% Similarity=0.106 Sum_probs=160.1
Q ss_pred CCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHccCChHH
Q 003710 314 NAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKG-FLPN--VALETALIDMYAGSGALKM 390 (801)
Q Consensus 314 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~~~--~~~~~~Li~~y~k~g~~~~ 390 (801)
+.+.++|.++|-+|.+. -+-...+-.++-+.+.+.|..+.|..+|+.+.++- +..+ ....-.|..-|.+.|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46778888888888763 11222244566677778888888888888777642 2211 2334456677888888888
Q ss_pred HHHHHhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhh----HHHHHHHHHhhcChhhHHHHHHH
Q 003710 391 TEKLFGSMIEKNL---VSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMT----FASILPAYAEIATLSDSMQIHSL 463 (801)
Q Consensus 391 A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t----~~~ll~a~~~~~~~~~a~~i~~~ 463 (801)
|+.+|..+.+.+. .....|+..|-+..+|++|++.-+++...+-++..+- |.-+-.......+++.|+..+..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8888888876443 3455678888888888888888888876554443321 22222222233444555555444
Q ss_pred HHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 003710 464 ITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSIS 543 (801)
Q Consensus 464 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 543 (801)
..+..-+. +..=-.+...+...|+++.|++.++...+.+..--..+...|..+|.+.
T Consensus 206 Alqa~~~c-----------------------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 206 ALQADKKC-----------------------VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHhhCccc-----------------------eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 44322100 0011122334455555555555555555433111122344444555555
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 003710 544 GMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARH 623 (801)
Q Consensus 544 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 623 (801)
|+.+++..++..+.+. .+....-..|.+.-....-. +.|...+.+
T Consensus 263 g~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~--------------------------------~~Aq~~l~~ 307 (389)
T COG2956 263 GKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGI--------------------------------DAAQAYLTR 307 (389)
T ss_pred CCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhCh--------------------------------HHHHHHHHH
Confidence 5555555555544432 22333333333333333333 333344444
Q ss_pred HHccCCCCchhHHHHHHHH--HHcCCchHHHHHHHHHHHCCCccCCcccE
Q 003710 624 VLSSAQDNTGCYVLLSNMY--AEAGRWEDVEQIKAIMEKEGLKKTTGCSM 671 (801)
Q Consensus 624 ~~~~~p~~~~~~~~l~~~y--~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 671 (801)
-+...|.--+.|.++---. +..|++.+...++..|....++..|.+.-
T Consensus 308 Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC 357 (389)
T COG2956 308 QLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRC 357 (389)
T ss_pred HHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCcee
Confidence 4444444333332222211 34466888888888888877777665444
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.14 E-value=1.4e-05 Score=84.78 Aligned_cols=524 Identities=14% Similarity=0.121 Sum_probs=275.9
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHC-CCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 003710 85 ESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCE-GFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKS 163 (801)
Q Consensus 85 ~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 163 (801)
+.++....+|| ..|-.-+..+.+.|+.......|++.... .+.-....|...++.....+-++.+..++.+.++.
T Consensus 92 er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 92 ERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 44555555565 37877888888888888888888876543 34445567888888888888888888888888765
Q ss_pred CCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCC----------CcccHHHHHHHHHcCCChhhH---HHHHHHHHhCC
Q 003710 164 GLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVR----------DTVSWNSMIGGYCSVGDGVSS---LVFFKEMQNCG 230 (801)
Q Consensus 164 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~----------d~~~~~~li~~~~~~g~~~~A---~~l~~~m~~~g 230 (801)
++..-+.-|..+++.+++++|.+.+...... +-..|+.+-...+++-+.-.. -.+++.+..
T Consensus 168 ----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~-- 241 (835)
T KOG2047|consen 168 ----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR-- 241 (835)
T ss_pred ----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--
Confidence 3344677788888899999988888776533 233466555555554332222 222333221
Q ss_pred CCCCh--hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHH-h---hcCCCCcccH
Q 003710 231 LRYDR--FSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLF-N---MIFPRNIVAW 304 (801)
Q Consensus 231 ~~p~~--~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf-~---~m~~~~~~~~ 304 (801)
.-+|. ..+.+|.+-|.+.|.++.|+.++++.+..- ..+.-++.+-+.|+....-.-+.++= . .-.+.+.+.+
T Consensus 242 rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl 319 (835)
T KOG2047|consen 242 RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDL 319 (835)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhH
Confidence 12332 234555555666666666666665554432 12222333334443322111111110 0 0000111111
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCC---------CC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCC-----C
Q 003710 305 NAMVGGYVVNAHFLESFSCLRKMLEDDNL---------NP-DCITIINLLPSCTKLGALLEGKSIHGYAIRKGF-----L 369 (801)
Q Consensus 305 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~---------~p-d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-----~ 369 (801)
+-.+.-|+.+.....+ .| +..++..-.. ...|+..+-...+.++++.=- .
T Consensus 320 -------------~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~G 384 (835)
T KOG2047|consen 320 -------------ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVG 384 (835)
T ss_pred -------------HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCC
Confidence 2223333333322111 11 1222322222 234556666777777776411 1
Q ss_pred CchhHHHHHHHHHHccCChHHHHHHHhcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCC-----
Q 003710 370 PNVALETALIDMYAGSGALKMTEKLFGSMIEKNL-------VSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPD----- 437 (801)
Q Consensus 370 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----- 437 (801)
.-...|..+.+.|-..|+++.|+.+|++..+-+- ..|..-...=.++.+++.|+.+.+......-.|.
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 1245688899999999999999999998754322 3455555555677888999998887753211111
Q ss_pred ------Hh------hHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHH
Q 003710 438 ------AM------TFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAY 505 (801)
Q Consensus 438 ------~~------t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~ 505 (801)
.. .|...+..--..|-++..+.+++.++...+..-..+-|- ..-+
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny-----------------------AmfL 521 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY-----------------------AMFL 521 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH-----------------------HHHH
Confidence 11 122222222334566666666666666554322211110 0112
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhc---cCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHhc
Q 003710 506 AIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSI---SGMVDEGWNYFDSMRKDYGIVPG--IEHYGCIIDLLGRI 579 (801)
Q Consensus 506 ~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~ 579 (801)
-.|..++++.+.|++-+..=--|+.. .|+..|.-+.+ .-.++.|+.+|++..+ |..|. ...|-.....=-+-
T Consensus 522 Eeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~ 599 (835)
T KOG2047|consen 522 EEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEH 599 (835)
T ss_pred HhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHh
Confidence 23445566666665543321124433 34444433322 2356777777777665 55544 12222222333345
Q ss_pred CCHHHHHHHHHhCCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCch--hHHHHHHHHHHcCCchHHHH
Q 003710 580 GNLDQAKRFIEEMPSAPT----ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTG--CYVLLSNMYAEAGRWEDVEQ 653 (801)
Q Consensus 580 g~~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~y~~~g~~~~a~~ 653 (801)
|....|+.++++...... ...|+..+.--...=-+.....+++++++.-|++.. .....+++=.+.|..+.|+.
T Consensus 600 GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARa 679 (835)
T KOG2047|consen 600 GLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARA 679 (835)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 666667777766544222 234444444322222223345667777766665432 23345666667777777777
Q ss_pred HHHHHHH
Q 003710 654 IKAIMEK 660 (801)
Q Consensus 654 ~~~~m~~ 660 (801)
++..-.+
T Consensus 680 Iya~~sq 686 (835)
T KOG2047|consen 680 IYAHGSQ 686 (835)
T ss_pred HHHhhhh
Confidence 6655433
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.09 E-value=1e-08 Score=102.45 Aligned_cols=199 Identities=11% Similarity=0.049 Sum_probs=152.3
Q ss_pred HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHH
Q 003710 438 AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQL 517 (801)
Q Consensus 438 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l 517 (801)
...+..+...+...|++++|.+.+..+.+.. |+ +...|..+...|...|++++|++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~---------------------~~~~~~~la~~~~~~~~~~~A~~~ 87 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PD---------------------DYLAYLALALYYQQLGELEKAEDS 87 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc---------------------cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3445566677778888888888888777543 22 223556666777778888888999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC
Q 003710 518 FSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP 596 (801)
Q Consensus 518 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p 596 (801)
+++..+.. +.+...+..+...+...|++++|.+.|+...+..........+..+...+...|++++|.+.+++... .|
T Consensus 88 ~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 88 FRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 99888753 33455677778888899999999999998875312122356677788889999999999999887653 23
Q ss_pred -CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 597 -TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 597 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
+...|..+...+...|+.+.|...++++++..|.++..+..++.++...|++++|..+.+.+..
T Consensus 167 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 167 QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3557778888888999999999999999888888888888889999999999999998887765
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1e-06 Score=88.34 Aligned_cols=137 Identities=12% Similarity=0.021 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHHHHhHHhcCCCCC-hHHHH
Q 003710 494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLL-SSCS-ISGMVDEGWNYFDSMRKDYGIVPG-IEHYG 570 (801)
Q Consensus 494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 570 (801)
+..+|.-|+.+|...|++.+|.-+-+...+. +.-+..+...+. ..|. ....-++|.++++.-. .++|+ ....+
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~ 442 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVN 442 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHH
Confidence 4445555666666666666666655554432 223444444432 2222 2233578888888654 67888 77888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchh
Q 003710 571 CIIDLLGRIGNLDQAKRFIEEMPS-APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGC 634 (801)
Q Consensus 571 ~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 634 (801)
.+..++.+.|+.+++..++++... .||...-+.|....+..+.+++|...+..+++++|+|..+
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 888999999999999999988764 5888888889899999999999999999999999987654
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.05 E-value=3.9e-07 Score=91.42 Aligned_cols=281 Identities=12% Similarity=0.072 Sum_probs=180.9
Q ss_pred CCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHH
Q 003710 314 NAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEK 393 (801)
Q Consensus 314 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 393 (801)
.|++.+|.++..+-.+. +-.| ...|..-..+.-..|+.+.+-+.+.++.+.--.++..+.-+........|+.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~-~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH-GEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhc-Ccch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 35556666555554433 2222 233444455555666666666666666665445566666666777777777777776
Q ss_pred HHhcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCH-------hhHHHHHHHHHhhcChhhHHHHHHH
Q 003710 394 LFGSM---IEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDA-------MTFASILPAYAEIATLSDSMQIHSL 463 (801)
Q Consensus 394 ~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~~~~~~~~~a~~i~~~ 463 (801)
-.++. ...+.........+|.+.|++.+...++.+|.+.|+--|. .++..+++-+...+..+.-...|+.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66544 4456777888888888888888888888888888765543 4667777776666666665666665
Q ss_pred HHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 003710 464 ITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSIS 543 (801)
Q Consensus 464 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 543 (801)
..+. ...++.+-.+++.-+.+| |+.++|.++..+-.+.+..|+ ...+-.+.+-
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l----------------------~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~ 307 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRL----------------------GDHDEAQEIIEDALKRQWDPR----LCRLIPRLRP 307 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHc----------------------CChHHHHHHHHHHHHhccChh----HHHHHhhcCC
Confidence 5432 122333334444444444 444555788888877777776 2223456677
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 003710 544 GMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APTARIWGALLTASRKNNDIVSAEFAAR 622 (801)
Q Consensus 544 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 622 (801)
++.+.-.+..+...+.++-.| ..+.+|..+|.+.+.|.+|.+.++.... .|+...|.-+..++...|+.+.|.+..+
T Consensus 308 ~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred CCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 777777777666665544444 5677777777888888888877775543 5777777777777777777777777776
Q ss_pred HHH
Q 003710 623 HVL 625 (801)
Q Consensus 623 ~~~ 625 (801)
+.+
T Consensus 386 e~L 388 (400)
T COG3071 386 EAL 388 (400)
T ss_pred HHH
Confidence 665
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=7e-07 Score=87.54 Aligned_cols=216 Identities=12% Similarity=0.055 Sum_probs=131.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHH-H----hhcChhhHHHHHHH
Q 003710 389 KMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAY-A----EIATLSDSMQIHSL 463 (801)
Q Consensus 389 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~-~----~~~~~~~a~~i~~~ 463 (801)
+.|.+++-.+.+.=+..--.++--|.+.++..+|..+.+++.. ..|-......+..+- . ....+.-|.+.|..
T Consensus 271 EgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffql 348 (557)
T KOG3785|consen 271 EGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQL 348 (557)
T ss_pred ccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Confidence 4455554433222222333456668889999999999888743 345444444443322 1 11224445555555
Q ss_pred HHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 003710 464 ITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSIS 543 (801)
Q Consensus 464 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 543 (801)
.-..+...|.. .--.+|.+.+.-..++++.+-+++....- +.-|.+--..+..|.+..
T Consensus 349 VG~Sa~ecDTI---------------------pGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~at 406 (557)
T KOG3785|consen 349 VGESALECDTI---------------------PGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLAT 406 (557)
T ss_pred hcccccccccc---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHh
Confidence 54554443322 12344555666666677777777766653 233333334567788889
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHH-HHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHH-HHHHHHhcCCHHHHHHHH
Q 003710 544 GMVDEGWNYFDSMRKDYGIVPGIEHY-GCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGA-LLTASRKNNDIVSAEFAA 621 (801)
Q Consensus 544 g~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~ 621 (801)
|.+.+|+++|-.+... .++ +..+| ..|..+|.+.|..+-|.+++-++....+..+..- +.+-|.+.+.+--|-+++
T Consensus 407 gny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 407 GNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred cChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999998877532 222 33444 4566888999999999999888764444444433 445688888888888888
Q ss_pred HHHHccCCC
Q 003710 622 RHVLSSAQD 630 (801)
Q Consensus 622 ~~~~~~~p~ 630 (801)
..+-.++|.
T Consensus 485 d~lE~lDP~ 493 (557)
T KOG3785|consen 485 DELEILDPT 493 (557)
T ss_pred hHHHccCCC
Confidence 887777774
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.04 E-value=9.3e-07 Score=95.64 Aligned_cols=391 Identities=15% Similarity=0.126 Sum_probs=256.0
Q ss_pred HhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhh
Q 003710 263 KSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCIT 339 (801)
Q Consensus 263 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t 339 (801)
...+..|..+|..|.-+..++|+++.+.+.|++... .....|+.+-..|...|.-..|+.++++-... .-.|+..+
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~-~~~ps~~s 394 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK-SEQPSDIS 394 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc-ccCCCcch
Confidence 344567889999999999999999999999998744 34567999999999999999999999887754 22244444
Q ss_pred -HHHHHHHHh-ccCChHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHccC-----------ChHHHHHHHhcCCC--
Q 003710 340 -IINLLPSCT-KLGALLEGKSIHGYAIRK--GF--LPNVALETALIDMYAGSG-----------ALKMTEKLFGSMIE-- 400 (801)
Q Consensus 340 -~~~ll~~~~-~~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~Li~~y~k~g-----------~~~~A~~~f~~~~~-- 400 (801)
+...-..|. +.+..++|...-..++.. |. ......+-.+.-+|...- ...++...+++..+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 333334444 346777777776666662 11 122334444444444221 12344555555532
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHH-HhCCCCchHHH
Q 003710 401 ---KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLIT-KLGLVSNIYIS 476 (801)
Q Consensus 401 ---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~-~~g~~~~~~~~ 476 (801)
++++.| +---|+..++.+.|++..++...-+-.-+...|..+.-.++..+++..|..+.+... +.|..-.. .
T Consensus 475 ~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l--~ 550 (799)
T KOG4162|consen 475 PTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL--M 550 (799)
T ss_pred CCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh--c
Confidence 233333 334567778899999999999887656677777777777778888999998888766 33321111 1
Q ss_pred HHHHHHHHhcCCccccchHHH-----HHHHHH----------------HHHHcCCHHHHHHHHHHHH--------HCC--
Q 003710 477 NSIVYMYAKCGDLQTARDVVS-----WNVIIM----------------AYAIHGLGKISIQLFSEMR--------EKG-- 525 (801)
Q Consensus 477 ~~li~~y~~~g~~~~A~d~~~-----~~~li~----------------~~~~~g~~~~A~~l~~~m~--------~~g-- 525 (801)
..-+..-...++.++|.|... |...=. .....++..+|.+..++.. ..|
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence 111112222455555542221 220000 0001112222222222211 111
Q ss_pred -------CCC--CH------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHH
Q 003710 526 -------IKP--NE------STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFI 589 (801)
Q Consensus 526 -------~~p--~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~ 589 (801)
+.| +. ..|......+...+..++|...+.+.. ++.|- ...|......+...|.++||.+.|
T Consensus 631 ~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 631 LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 122 21 124455567888899999988877765 55565 677888888999999999999988
Q ss_pred HhCCC-CCC-cchHHHHHHHHHhcCCHHHHHH--HHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710 590 EEMPS-APT-ARIWGALLTASRKNNDIVSAEF--AARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 590 ~~m~~-~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 661 (801)
..... .|+ +.+..+|...+...|+...|+. +...+++++|.++..|..|+.++-+.|+.++|.+.|....+.
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 77653 565 5677888888999999888888 999999999999999999999999999999999999887664
No 62
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=2.8e-05 Score=86.24 Aligned_cols=542 Identities=14% Similarity=0.135 Sum_probs=307.8
Q ss_pred HHHHHHcCCChHHHHHHHhhCC-CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhH
Q 003710 74 ALQELVSSGSMESACYLFEKMS-YLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSE 152 (801)
Q Consensus 74 l~~~~~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 152 (801)
.+..|+.+|.++++.-...+.. .|| |-.+|+.+.+ -+++++.++...|.+..- ...-++.+...+...+....
T Consensus 487 Vi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme~N~iQq 560 (1666)
T KOG0985|consen 487 VIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEE--PLADIEQIVDLFMELNLIQQ 560 (1666)
T ss_pred HHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCC--CcccHHHHHHHHHHHHhhhh
Confidence 3344444444444444433332 233 4456777666 678888888888776431 12222333322222222222
Q ss_pred HH-------------------HHHHHHHHhCCC----------CchhhHhHHHHHHHhcCCchHHHHhhccCC--CCCcc
Q 003710 153 GE-------------------KVHGSLFKSGLN----------SDVYVCNSLIVMYMKLGCVECAERMFDEMP--VRDTV 201 (801)
Q Consensus 153 a~-------------------~~~~~~~~~g~~----------~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~d~~ 201 (801)
+. ++++.-...+.. -..+-+-.+.+.+-+.|-...|++.+..+. .+.++
T Consensus 561 ~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vV 640 (1666)
T KOG0985|consen 561 CTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVV 640 (1666)
T ss_pred hHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHH
Confidence 22 222222222210 011224455667778888888888887765 22221
Q ss_pred cHHH----HHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh-----------CC
Q 003710 202 SWNS----MIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKS-----------GL 266 (801)
Q Consensus 202 ~~~~----li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~-----------g~ 266 (801)
.-+. -+-+|.-.-.++++++.++.|...+++-|..+...+..-+...-..+.-.++|+..... ++
T Consensus 641 hth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~ 720 (1666)
T KOG0985|consen 641 HTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNF 720 (1666)
T ss_pred HhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhcc
Confidence 1111 12345555578899999999999888888777766666555444444444444443221 34
Q ss_pred CCchHHHHHHHHHHhcCCChHHHHHHHhhcCC-------------------C------------CcccH------HHHHH
Q 003710 267 EMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP-------------------R------------NIVAW------NAMVG 309 (801)
Q Consensus 267 ~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~-------------------~------------~~~~~------~~li~ 309 (801)
.-|+.+.-..|.+.++.|++.+.+++.++-.- | |.+.| -..|.
T Consensus 721 seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE 800 (1666)
T KOG0985|consen 721 SEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIE 800 (1666)
T ss_pred ccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHH
Confidence 56777777889999999999999988765310 0 11111 11244
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCChh-------------hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 003710 310 GYVVNAHFLESFSCLRKMLEDDNLNPDCI-------------TIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALET 376 (801)
Q Consensus 310 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-------------t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 376 (801)
.|++.=++.+.-.+.-.+... .-+.. ....+..-+-+.+++..-...++..+..|. .+..++|
T Consensus 801 ~yVQkvNps~~p~VvG~LLD~---dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hn 876 (1666)
T KOG0985|consen 801 IYVQKVNPSRTPQVVGALLDV---DCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHN 876 (1666)
T ss_pred HHHhhcCCcccchhhhhhhcC---CCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHh
Confidence 555443333222222222111 11111 112233344455556556666666666664 3667777
Q ss_pred HHHHHHHccCChH----------------------------------------------------HHHHHHhcC------
Q 003710 377 ALIDMYAGSGALK----------------------------------------------------MTEKLFGSM------ 398 (801)
Q Consensus 377 ~Li~~y~k~g~~~----------------------------------------------------~A~~~f~~~------ 398 (801)
+|...|..+++-. .|+-+.+++
T Consensus 877 AlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~ 956 (1666)
T KOG0985|consen 877 ALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWA 956 (1666)
T ss_pred hhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHH
Confidence 7777665433211 011111111
Q ss_pred -----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhh----HHHH-H-----
Q 003710 399 -----------------------IEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMT----FASI-L----- 445 (801)
Q Consensus 399 -----------------------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t----~~~l-l----- 445 (801)
...|+..-+.-+.++...+-+.+-++++++..-. |+.++ ...| +
T Consensus 957 ~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAik 1033 (1666)
T KOG0985|consen 957 KVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNLQNLLILTAIK 1033 (1666)
T ss_pred HHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---CcccccchhhhhhHHHHHhh
Confidence 0112233344455667777777778888777532 21111 1111 1
Q ss_pred ----------------------HHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc-------hHH
Q 003710 446 ----------------------PAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR-------DVV 496 (801)
Q Consensus 446 ----------------------~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-------d~~ 496 (801)
..+...+-+++|..||... ..+....+.||+ .-++++.|. ...
T Consensus 1034 ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p~ 1105 (1666)
T KOG0985|consen 1034 ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEPA 1105 (1666)
T ss_pred cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCChH
Confidence 1112223334444444322 222233333332 234444443 456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 003710 497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLL 576 (801)
Q Consensus 497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 576 (801)
.|..+..+-.+.|...+|++-|-+. -|...|..++..+.+.|.+++-.+++...+++ .-+|.+ -+.||-+|
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~i--d~eLi~Ay 1176 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYI--DSELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccc--hHHHHHHH
Confidence 8999999999999999999887442 35678999999999999999999999877765 556654 45799999
Q ss_pred HhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 003710 577 GRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKA 656 (801)
Q Consensus 577 ~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 656 (801)
++.+++.|-.+++. -||.........-|...|.++-|+-++.. .+.|..|+..+...|.+..|...-+
T Consensus 1177 Akt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888874 46777777888889999999888777653 4567777777777787777765544
Q ss_pred H
Q 003710 657 I 657 (801)
Q Consensus 657 ~ 657 (801)
+
T Consensus 1245 K 1245 (1666)
T KOG0985|consen 1245 K 1245 (1666)
T ss_pred h
Confidence 3
No 63
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.99 E-value=3e-07 Score=92.25 Aligned_cols=211 Identities=14% Similarity=0.115 Sum_probs=154.4
Q ss_pred HHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHHcCCHHHHH
Q 003710 448 YAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR------------DVVSWNVIIMAYAIHGLGKISI 515 (801)
Q Consensus 448 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~------------d~~~~~~li~~~~~~g~~~~A~ 515 (801)
.-+.|+.+.+-+++.++.+..-.++..++-+........|+.+.|+ +......+..+|.+.|++.+.+
T Consensus 128 A~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll 207 (400)
T COG3071 128 AQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALL 207 (400)
T ss_pred HHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHH
Confidence 3334444444444444443322333344444444444444444443 3445667778888888888889
Q ss_pred HHHHHHHHCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 003710 516 QLFSEMREKGIKPNE-------STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRF 588 (801)
Q Consensus 516 ~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 588 (801)
.++.+|.+.|+--|. .+|..++.-+...+..+.-...|+...+ ..+.++..-.+++.-+.++|+.++|.++
T Consensus 208 ~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~ 285 (400)
T COG3071 208 AILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR--KLRNDPELVVAYAERLIRLGDHDEAQEI 285 (400)
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH--HhhcChhHHHHHHHHHHHcCChHHHHHH
Confidence 999999999976653 4788999988888888888888988876 4556677888999999999999999999
Q ss_pred HHhCCCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710 589 IEEMPSA-PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG 662 (801)
Q Consensus 589 ~~~m~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 662 (801)
+++...+ -|.. -..+-.+..-++.+.=++.+++-++..|+++..+.+|+..|.+.+.|.+|.+.|+...+.+
T Consensus 286 i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 286 IEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred HHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 8876543 3333 3334456778888888999999999999999999999999999999999999999766544
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=7.3e-07 Score=86.73 Aligned_cols=287 Identities=12% Similarity=0.127 Sum_probs=197.0
Q ss_pred CCChhhHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCc--hHHHHHHHHHHhcCCChHH
Q 003710 213 VGDGVSSLVFFKEMQNCGLRYD-RFSLISALGAISIEGCLKIGKEIHCQVIKSG-LEMD--VMVQTSLVDMYGKCGVVDY 288 (801)
Q Consensus 213 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g-~~~~--~~~~~~li~~y~~~g~~~~ 288 (801)
+.+.++|+++|-+|.+. .|. ..+-.++-+-+.+.|..+.|..+|..+.++- +..+ ....-.|..-|.+.|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46778888888888763 222 2223455566777888888888888887652 1111 2334456678899999999
Q ss_pred HHHHHhhcCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChh----hHHHHHHHHhccCChHHHHHHHH
Q 003710 289 AERLFNMIFPRNI---VAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCI----TIINLLPSCTKLGALLEGKSIHG 361 (801)
Q Consensus 289 A~~lf~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~----t~~~ll~~~~~~g~~~~a~~~~~ 361 (801)
|+.+|..+.+... .....|+..|-+..+|++|++.-+++.+. +-.+..+ .|..+-.......+++.|..++.
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999876443 34566789999999999999999999876 4444433 34455555566678899999998
Q ss_pred HHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCC
Q 003710 362 YAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLV----SWNAMIAAYVRNGQNREAMELFQDLWSEPLKPD 437 (801)
Q Consensus 362 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 437 (801)
...+.+ +..+...-.+-+.+...|+++.|.+.++.+.+.|.. .-..|..+|.+.|+.++....+..+.+....++
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 887764 334555556778889999999999999999877653 566788899999999999999999987644444
Q ss_pred HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHH
Q 003710 438 AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQL 517 (801)
Q Consensus 438 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l 517 (801)
.. ..+-.......-.+.|......-++. .|+...+..||+.-..-++ .|...+-+.+
T Consensus 284 ~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~dae-------------------eg~~k~sL~~ 340 (389)
T COG2956 284 AE--LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAE-------------------EGRAKESLDL 340 (389)
T ss_pred HH--HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhcccc-------------------ccchhhhHHH
Confidence 32 22222223333445555555444433 6888888888886543222 2334455667
Q ss_pred HHHHHHCCC
Q 003710 518 FSEMREKGI 526 (801)
Q Consensus 518 ~~~m~~~g~ 526 (801)
++.|..+.+
T Consensus 341 lr~mvge~l 349 (389)
T COG2956 341 LRDMVGEQL 349 (389)
T ss_pred HHHHHHHHH
Confidence 777765433
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.95 E-value=1.5e-05 Score=86.61 Aligned_cols=477 Identities=14% Similarity=0.087 Sum_probs=275.0
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHh---cCCCh-------------------hHHHHHH----HHHHHhC
Q 003710 111 DNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACA---GLLYL-------------------SEGEKVH----GSLFKSG 164 (801)
Q Consensus 111 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~---~~~~~-------------------~~a~~~~----~~~~~~g 164 (801)
..++.++++.-+......+..-+..++..+-.++. ..++. +++.... ..+.-..
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 45566677776666665555555555554443322 22222 2332221 2222234
Q ss_pred CCCchhhHhHHHHHHHhcCCchHHHHhhccCCC---CCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHH
Q 003710 165 LNSDVYVCNSLIVMYMKLGCVECAERMFDEMPV---RDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISA 241 (801)
Q Consensus 165 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 241 (801)
+..|..+|..|.-+..++|+++.+-+.|++... .....|+.+-..|...|.-..|+.++++-....-.|+..+-..+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 567889999999999999999999999988652 24567999999999999999999999876554333544443333
Q ss_pred H-HHHh-ccCChHHHHHHHHHHHHhC--CC--CchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCC
Q 003710 242 L-GAIS-IEGCLKIGKEIHCQVIKSG--LE--MDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNA 315 (801)
Q Consensus 242 l-~a~~-~~~~~~~a~~l~~~~~~~g--~~--~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g 315 (801)
. +.|. +.+.++++..+-.++++.. .. .....|-.+--+|...- ....+|. -+..
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~s------eR~~ 458 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKS------ERDA 458 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChH------HHHH
Confidence 3 3343 4567777776666665521 10 11112222222222110 0000000 0111
Q ss_pred ChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHH
Q 003710 316 HFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLF 395 (801)
Q Consensus 316 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f 395 (801)
...++++.+++..+..+-.|+...|.++-. +..++++.|.+...+..+.+-..+...+..|.-.+...+++.+|+.+.
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lalq~--A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLALQY--AEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHH--HHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 234566666666655455565555555443 345667777777777777766667777777777777777777777776
Q ss_pred hcCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHhCC---------------------C--C---CC--CHhhHHHH
Q 003710 396 GSMIEKNLVSWNAM---IAAYVRNGQNREAMELFQDLWSE---------------------P--L---KP--DAMTFASI 444 (801)
Q Consensus 396 ~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~---------------------g--~---~p--d~~t~~~l 444 (801)
+...+.-...++.| |..-..-++.++|+.+...+..- | . .| ...|+..+
T Consensus 537 d~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l 616 (799)
T KOG4162|consen 537 DAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL 616 (799)
T ss_pred HHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence 65422211111111 11112234555555544444210 0 0 00 00111111
Q ss_pred HHHHH-hhcChhhHHHHHHHHHHhCCCCchH-HHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003710 445 LPAYA-EIATLSDSMQIHSLITKLGLVSNIY-ISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMR 522 (801)
Q Consensus 445 l~a~~-~~~~~~~a~~i~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 522 (801)
..-.. +.....-... +.+.-..|... ++.. ....|......+...++.++|...+.+..
T Consensus 617 s~l~a~~~~~~~se~~----Lp~s~~~~~~~~~~~~---------------~~~lwllaa~~~~~~~~~~~a~~CL~Ea~ 677 (799)
T KOG4162|consen 617 SSLVASQLKSAGSELK----LPSSTVLPGPDSLWYL---------------LQKLWLLAADLFLLSGNDDEARSCLLEAS 677 (799)
T ss_pred HHHHHhhhhhcccccc----cCcccccCCCCchHHH---------------HHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 11000 0000000000 00000001000 0000 23457777788888888888888877776
Q ss_pred HCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHH--HHHhCCC--CC
Q 003710 523 EKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKR--FIEEMPS--AP 596 (801)
Q Consensus 523 ~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~--~~~~m~~--~p 596 (801)
. +.|- ...|......+...|..++|.+.|.... .+.|+ +....++..++.+.|+..-|.. ++..+.. ..
T Consensus 678 ~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 678 K--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred h--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 5 3443 3345555566777899999999998775 67898 8889999999999998766666 7777653 34
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCch
Q 003710 597 TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTG 633 (801)
Q Consensus 597 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 633 (801)
+...|-.|.....+.|+.+.|-+-|.-++++++.+|.
T Consensus 753 n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 753 NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 6789999999999999999999999999999887653
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.95 E-value=7.4e-08 Score=89.41 Aligned_cols=162 Identities=13% Similarity=0.074 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 003710 497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIID 574 (801)
Q Consensus 497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 574 (801)
+...+.-+|.+.|+...|.+-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|+... .+.|+ ..+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 455677889999999999999999999 457654 78888999999999999999999887 46776 888999999
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchH
Q 003710 575 LLGRIGNLDQAKRFIEEMPSAPT----ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWED 650 (801)
Q Consensus 575 ~~~~~g~~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 650 (801)
.+|..|++++|...|++....|. ..+|..+.-+..+.|+.+.|+..+++.++.+|+.+.....+.+...+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999999876654 46788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCC
Q 003710 651 VEQIKAIMEKEGL 663 (801)
Q Consensus 651 a~~~~~~m~~~g~ 663 (801)
|...++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999999887754
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.94 E-value=2.9e-07 Score=99.08 Aligned_cols=239 Identities=13% Similarity=0.173 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhCC-----C-CCCCHhhHH-HHHHHHHhhcChhhHHHHHHHHHHhC---C-CCc-
Q 003710 405 SWNAMIAAYVRNGQNREAMELFQDLWSE-----P-LKPDAMTFA-SILPAYAEIATLSDSMQIHSLITKLG---L-VSN- 472 (801)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~pd~~t~~-~ll~a~~~~~~~~~a~~i~~~~~~~g---~-~~~- 472 (801)
+...+...|...|++++|+.+++..++. | ..|...+.. .+-..|...+++++|..+|+.+...- + ..+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444788899999999999999887653 2 123333322 24556777888899988888877321 1 112
Q ss_pred --hHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHhccCCHHH
Q 003710 473 --IYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKP-NES-TFVSLLSSCSISGMVDE 548 (801)
Q Consensus 473 --~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~-t~~~ll~a~~~~g~~~~ 548 (801)
..+++.|..+|.+.|++++|.. ..+.|++++++ ..|..+ ... -++.+...|...+.+++
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~---------------~~e~Al~I~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Ee 343 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEE---------------YCERALEIYEK--LLGASHPEVAAQLSELAAILQSMNEYEE 343 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHH---------------HHHHHHHHHHH--hhccChHHHHHHHHHHHHHHHHhcchhH
Confidence 2333444445555555555531 12444555555 223333 222 36677778999999999
Q ss_pred HHHHHHHhHHhcC--CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-------C--C-CcchHHHHHHHHHhcC
Q 003710 549 GWNYFDSMRKDYG--IVPG----IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-------A--P-TARIWGALLTASRKNN 612 (801)
Q Consensus 549 a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m~~-------~--p-~~~~~~~ll~~~~~~g 612 (801)
|..+++...+.+. ..++ ..+|+.|..+|...|+++||.+++++... + + .....+.|..+|...+
T Consensus 344 a~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k 423 (508)
T KOG1840|consen 344 AKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK 423 (508)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc
Confidence 9999988766544 2222 56899999999999999999999987642 1 1 1345667888898889
Q ss_pred CHHHHHHHHHHHHcc----CC---CCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 613 DIVSAEFAARHVLSS----AQ---DNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 613 ~~~~a~~~~~~~~~~----~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
+.++|.++++....+ .| +-..+|..|+..|...|++++|.++.+....
T Consensus 424 ~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 424 KYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred ccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 998888888776542 33 4456788999999999999999999877653
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=9.5e-06 Score=85.40 Aligned_cols=435 Identities=13% Similarity=0.094 Sum_probs=257.4
Q ss_pred HHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHH--HHHHHh--c
Q 003710 207 IGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTS--LVDMYG--K 282 (801)
Q Consensus 207 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~--li~~y~--~ 282 (801)
++-+..+|++++|++...++...+ +-|...+..-+-++.+.+.++.|..+.+. .+. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHH
Confidence 566778899999999999998765 44566677777888888999988854432 221 122222 245555 6
Q ss_pred CCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CChhhHHHHHHHHhccCChHHHHHHHH
Q 003710 283 CGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLN-PDCITIINLLPSCTKLGALLEGKSIHG 361 (801)
Q Consensus 283 ~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~-pd~~t~~~ll~~~~~~g~~~~a~~~~~ 361 (801)
.+..|+|...++...+-+..+...-...+.+.|++++|+++|+.+.+. +.. -|...-..++.+-... .. .
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~~a~l-------~~-~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAVAAAL-------QV-Q 162 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHhh-------hH-H
Confidence 789999999998655555445555667788899999999999999876 322 2222222333221111 01 1
Q ss_pred HHHHhCCCCchhHHHH---HHHHHHccCChHHHHHHHhcC--------CCC-----CHHH-----HHHHHHHHHHcCCHH
Q 003710 362 YAIRKGFLPNVALETA---LIDMYAGSGALKMTEKLFGSM--------IEK-----NLVS-----WNAMIAAYVRNGQNR 420 (801)
Q Consensus 362 ~~~~~g~~~~~~~~~~---Li~~y~k~g~~~~A~~~f~~~--------~~~-----~~~~-----~~~li~~~~~~g~~~ 420 (801)
.+......| ..+|.. ....+...|++.+|+++++.. .+. ++.. ---|.-.+...|+.+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 222222233 222322 234566789999999998876 111 1111 112334566789999
Q ss_pred HHHHHHHHHhCCCCCCCHhhHHH---HHHHHHhhcChhh--HHHHHHHH-----------HHhCCCCchHHHHHHHHHHH
Q 003710 421 EAMELFQDLWSEPLKPDAMTFAS---ILPAYAEIATLSD--SMQIHSLI-----------TKLGLVSNIYISNSIVYMYA 484 (801)
Q Consensus 421 ~A~~l~~~m~~~g~~pd~~t~~~---ll~a~~~~~~~~~--a~~i~~~~-----------~~~g~~~~~~~~~~li~~y~ 484 (801)
+|..++...+... .+|...... =|.+...-.++.. .+..++.. ....-...+.--++++.+|.
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988764 445432222 2233333333333 11111111 11111122333456677765
Q ss_pred hcCCccccc--------hHHHHHHHHHH-HH-HcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHH
Q 003710 485 KCGDLQTAR--------DVVSWNVIIMA-YA-IHGLGKISIQLFSEMREKGIKPNE--STFVSLLSSCSISGMVDEGWNY 552 (801)
Q Consensus 485 ~~g~~~~A~--------d~~~~~~li~~-~~-~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 552 (801)
..++--.-. -...+.+++.. +. +.....+|.+++...-+. .|.. +.....+.-....|+++.|.++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 433211100 12233344333 22 223577788888877663 3544 3444455567779999999999
Q ss_pred HH--------HhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-cchHHHHHHHHHhcCCHH
Q 003710 553 FD--------SMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEM--------PSAPT-ARIWGALLTASRKNNDIV 615 (801)
Q Consensus 553 ~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~ 615 (801)
+. .+.+ +.-.+.+...++.+|.+.+.-+-|..++.+. ..++. ...|.-+...-.++|+-+
T Consensus 399 l~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 399 LSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 98 4432 2223567778889999888766555555433 22322 234444455556779999
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCccCCccc
Q 003710 616 SAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCS 670 (801)
Q Consensus 616 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s 670 (801)
+|...++++++.+|+|....+.++.+|+... .+.|..+- +.+.+.++..
T Consensus 476 ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~-----k~L~p~~~l~ 524 (652)
T KOG2376|consen 476 EASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLS-----KKLPPLKGLK 524 (652)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHh-----hcCCCcccch
Confidence 9999999999999999999999999998753 44444432 3345555544
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.2e-06 Score=91.52 Aligned_cols=268 Identities=14% Similarity=0.116 Sum_probs=168.7
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChH
Q 003710 310 GYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALK 389 (801)
Q Consensus 310 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 389 (801)
-+...+++.+.++++....+..++.++. +..-|..+...|+..+-..+-..+++. .+....+|-++.-.|.-.|+..
T Consensus 253 ~~y~~c~f~~c~kit~~lle~dpfh~~~--~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKDPFHLPC--LPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhCCCCcch--HHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcH
Confidence 3344455555555555554432222222 222233444444443333333333332 3445667777777777788999
Q ss_pred HHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCC-HhhHHHHHHHHHhhcChhhHHHHHHHHH
Q 003710 390 MTEKLFGSMIEKN---LVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPD-AMTFASILPAYAEIATLSDSMQIHSLIT 465 (801)
Q Consensus 390 ~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 465 (801)
+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. -|. ..-+.-+---|.+.++++.|.+.|.++.
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999988764333 357989999999999999999988776442 111 1112223335677899999999998877
Q ss_pred HhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHH
Q 003710 466 KLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREK--GIKP----NESTFVSLLSS 539 (801)
Q Consensus 466 ~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p----~~~t~~~ll~a 539 (801)
... +.|+.+.+-+.-+ ....+.+.+|..+|+..+.. .+.+ -..+++.|..+
T Consensus 408 ai~-P~Dplv~~Elgvv----------------------ay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 408 AIA-PSDPLVLHELGVV----------------------AYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred hcC-CCcchhhhhhhhe----------------------eehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 543 4445554444333 33445566668888776621 0111 23467888888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCcchHHHHHHH
Q 003710 540 CSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APTARIWGALLTA 607 (801)
Q Consensus 540 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~ 607 (801)
|.+.+++++|+..|+.... -..-+..+|+++.-.|...|+++.|.+.|.+... +|+..+-..+++.
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 9999999999999988764 2233488888888888888999998888887654 6777666666664
No 70
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.92 E-value=2.8e-05 Score=82.93 Aligned_cols=459 Identities=14% Similarity=0.092 Sum_probs=233.1
Q ss_pred CCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCC---CCCcccHHHHHHHHHcCCChhhHHHHH
Q 003710 147 LLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMP---VRDTVSWNSMIGGYCSVGDGVSSLVFF 223 (801)
Q Consensus 147 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~ 223 (801)
.+.+..+..+.+.+++ +......+....--.+...|+-++|......-. .++.++|..+--.+-...++++|+..|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 3445555555555555 222122222222222345577777777665543 346788998888888888999999999
Q ss_pred HHHHhCCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcc
Q 003710 224 KEMQNCGLRYDRF-SLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIV 302 (801)
Q Consensus 224 ~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~ 302 (801)
+..... .||.. .+.-+----++.++++... .+.+.++ +.......
T Consensus 99 ~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~---------------~tr~~LL-----------------ql~~~~ra 144 (700)
T KOG1156|consen 99 RNALKI--EKDNLQILRDLSLLQIQMRDYEGYL---------------ETRNQLL-----------------QLRPSQRA 144 (700)
T ss_pred HHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHH---------------HHHHHHH-----------------HhhhhhHH
Confidence 887663 34332 1111111111122222111 1111111 11223456
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHH------HHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 003710 303 AWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLP------SCTKLGALLEGKSIHGYAIRKGFLPNVALET 376 (801)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~------~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 376 (801)
.|..+.-++.-.|++..|..++++..+.....|+...+..... ...+.|.++.+.+.+...... +......--
T Consensus 145 ~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e 223 (700)
T KOG1156|consen 145 SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhh
Confidence 7888888888888888888888888766333566665543322 334556666666655443322 122233334
Q ss_pred HHHHHHHccCChHHHHHHHhcCCCC--CHHHHHHHH-HHHHHcCCHHHHH-HHHHHHhCC---CCCCCHhhHHHHHHHHH
Q 003710 377 ALIDMYAGSGALKMTEKLFGSMIEK--NLVSWNAMI-AAYVRNGQNREAM-ELFQDLWSE---PLKPDAMTFASILPAYA 449 (801)
Q Consensus 377 ~Li~~y~k~g~~~~A~~~f~~~~~~--~~~~~~~li-~~~~~~g~~~~A~-~l~~~m~~~---g~~pd~~t~~~ll~a~~ 449 (801)
.-.+.+.+.+++++|..++..+..+ |.+-|.... .++.+-.+.-+++ .+|....+. .-.|-....+ ++ .
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls-vl---~ 299 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS-VL---N 299 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH-Hh---C
Confidence 4566778888999999888887544 444444433 3443333444444 555555432 1111111111 11 1
Q ss_pred hhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003710 450 EIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN 529 (801)
Q Consensus 450 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 529 (801)
...-.+....++....+.|+++ ++..+...|-.-...+ ....++..|...-.........+.- .--.|.
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~------~le~Lvt~y~~~L~~~~~f~~~D~~--~~E~Pt 368 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA------FLEKLVTSYQHSLSGTGMFNFLDDG--KQEPPT 368 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH------HHHHHHHHHHhhcccccCCCccccc--ccCCch
Confidence 1222233344455555666554 2333333332111000 0000111111000000000000000 001344
Q ss_pred HH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHH
Q 003710 530 ES--TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGAL 604 (801)
Q Consensus 530 ~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~l 604 (801)
.. |+..+...+-+.|+++.|..+.+... +-.|+ ++.|..=..++..+|.+++|..++++... .+|..+-.--
T Consensus 369 tllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 33 34455566777788888888877665 55676 66676777777888888888888877653 3444333334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCc-------hhHH--HHHHHHHHcCCchHHHHHHHHHH
Q 003710 605 LTASRKNNDIVSAEFAARHVLSSAQDNT-------GCYV--LLSNMYAEAGRWEDVEQIKAIME 659 (801)
Q Consensus 605 l~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~--~l~~~y~~~g~~~~a~~~~~~m~ 659 (801)
.....+.++.++|.+++.+.-+-+.+-. -.|. -=+.+|.++|+|.+|.+=|..+.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 4445566777777777766654332100 0122 23567888888887777665553
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.91 E-value=1.4e-07 Score=94.07 Aligned_cols=162 Identities=15% Similarity=0.156 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHH
Q 003710 495 VVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCI 572 (801)
Q Consensus 495 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 572 (801)
...+..+...|...|++++|++.+++..+. .|+ ...+..+...+...|++++|.+.++...+. .|+ ...+..+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~ 105 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL---NPNNGDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHH
Confidence 456777888899999999999999999874 354 557778888999999999999999988753 343 6778889
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCc
Q 003710 573 IDLLGRIGNLDQAKRFIEEMPSAP----TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRW 648 (801)
Q Consensus 573 i~~~~~~g~~~eA~~~~~~m~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 648 (801)
...+...|++++|.+.+++....+ ....|..+...+...|+.+.|...++++++..|++...+..++.+|...|++
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 999999999999999999876432 3456777788889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHC
Q 003710 649 EDVEQIKAIMEKE 661 (801)
Q Consensus 649 ~~a~~~~~~m~~~ 661 (801)
++|...+++..+.
T Consensus 186 ~~A~~~~~~~~~~ 198 (234)
T TIGR02521 186 KDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988765
No 72
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=0.00027 Score=78.83 Aligned_cols=564 Identities=14% Similarity=0.156 Sum_probs=292.7
Q ss_pred HHHHHcCCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChh
Q 003710 75 LQELVSSGSMESACYLFEKMSY---LDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLS 151 (801)
Q Consensus 75 ~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 151 (801)
.+.+...|++++|-++-...|+ ++..+-+.+=..=+..|.+.--+..|..+...| +.|..----+.+.-...|+.+
T Consensus 367 FneLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~Q~Rkq 445 (1666)
T KOG0985|consen 367 FNELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQQGRKQ 445 (1666)
T ss_pred HHHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHhhhHHH
Confidence 3455567778887777777765 466666666555566777777888888888777 444432222333333334333
Q ss_pred HHHHHHHH-----HHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCC-----------CCcccHHHHHHHHHcCCC
Q 003710 152 EGEKVHGS-----LFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPV-----------RDTVSWNSMIGGYCSVGD 215 (801)
Q Consensus 152 ~a~~~~~~-----~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----------~d~~~~~~li~~~~~~g~ 215 (801)
.....+.+ -.+.|=-..++--+.-++.|.|.+-...+...|.+... --+--|-.+|+...+ -.
T Consensus 446 LlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPdymflLq~l~r-~s 524 (1666)
T KOG0985|consen 446 LLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPDYMFLLQQLKR-SS 524 (1666)
T ss_pred HHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCccHHHHHHHHHc-cC
Confidence 32222211 11222111111112234444444444444444443321 012235566666666 56
Q ss_pred hhhHHHHHHHHHhC-CCCCChhhHHH--------------HHHHHhccCChHHH---HHHHHHHHHhCCCC-ch------
Q 003710 216 GVSSLVFFKEMQNC-GLRYDRFSLIS--------------ALGAISIEGCLKIG---KEIHCQVIKSGLEM-DV------ 270 (801)
Q Consensus 216 ~~~A~~l~~~m~~~-g~~p~~~t~~~--------------ll~a~~~~~~~~~a---~~l~~~~~~~g~~~-~~------ 270 (801)
++.+.++...|.+. +...|...... +|.++ +....+++ .++++.-...+... |.
T Consensus 525 PD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaL-K~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~m 603 (1666)
T KOG0985|consen 525 PDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDAL-KLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDM 603 (1666)
T ss_pred hhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHh-cCCChhhhhHHHHHHHHHhccchHHHHHHHhccc
Confidence 77777777776552 22222221111 11111 11222221 12222222222110 11
Q ss_pred ---HHHHHHHHHHhcCCChHHHHHHHhhcCC--CCcccHHH----HHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHH
Q 003710 271 ---MVQTSLVDMYGKCGVVDYAERLFNMIFP--RNIVAWNA----MVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITII 341 (801)
Q Consensus 271 ---~~~~~li~~y~~~g~~~~A~~lf~~m~~--~~~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~ 341 (801)
+-.-.+.+.+.|.|-...|.+.+..+.+ +.++.-+. .+-.|...-.++++++.++.|... ++.-|..+..
T Consensus 604 FtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~-NirqNlQi~V 682 (1666)
T KOG0985|consen 604 FTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSA-NIRQNLQIVV 682 (1666)
T ss_pred cccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHhhhHHHH
Confidence 1133455677788888888888877633 22221111 234455566788999999999888 7877777766
Q ss_pred HHHHHHhccCChHHHHHHHHHHHH-----------hCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC----------
Q 003710 342 NLLPSCTKLGALLEGKSIHGYAIR-----------KGFLPNVALETALIDMYAGSGALKMTEKLFGSMIE---------- 400 (801)
Q Consensus 342 ~ll~~~~~~g~~~~a~~~~~~~~~-----------~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---------- 400 (801)
.+-.-|+..-..+...++|+.... .++.-|..+.--.|.+-++.|.+.+.+++.++-.-
T Consensus 683 Qvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfL 762 (1666)
T KOG0985|consen 683 QVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFL 762 (1666)
T ss_pred HHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHH
Confidence 666555555444445555544432 13456677777889999999999998888765410
Q ss_pred ---------------------CCHHHH------HHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhh-------------
Q 003710 401 ---------------------KNLVSW------NAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMT------------- 440 (801)
Q Consensus 401 ---------------------~~~~~~------~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t------------- 440 (801)
.|.+.| .-.|..|.+.-++.+.-.+...++.- .-+...
T Consensus 763 keAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~--dC~E~~ik~Li~~v~gq~~ 840 (1666)
T KOG0985|consen 763 KEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDV--DCSEDFIKNLILSVRGQFP 840 (1666)
T ss_pred HhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcC--CCcHHHHHHHHHHHhccCC
Confidence 022221 11344555443333333333222221 111111
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc---------------------------
Q 003710 441 FASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR--------------------------- 493 (801)
Q Consensus 441 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~--------------------------- 493 (801)
..-|..-+.+.+++..-...++..+..| ..|..++|+|...|....+-.+-.
T Consensus 841 ~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~va 919 (1666)
T KOG0985|consen 841 VDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVA 919 (1666)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEe
Confidence 1223334445556666666677777777 457888888877766554433221
Q ss_pred -------------------------------hHHHH--------------------------------HHHHHHHHHcCC
Q 003710 494 -------------------------------DVVSW--------------------------------NVIIMAYAIHGL 510 (801)
Q Consensus 494 -------------------------------d~~~~--------------------------------~~li~~~~~~g~ 510 (801)
|...| ..-+.++...+-
T Consensus 920 YerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadL 999 (1666)
T KOG0985|consen 920 YERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADL 999 (1666)
T ss_pred ecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCC
Confidence 11122 223344444444
Q ss_pred HHHHHHHHHHHHHCCCC-CCHHHHHHH----------------------------HHHHhccCCHHHHHHHHHHhHHhcC
Q 003710 511 GKISIQLFSEMREKGIK-PNESTFVSL----------------------------LSSCSISGMVDEGWNYFDSMRKDYG 561 (801)
Q Consensus 511 ~~~A~~l~~~m~~~g~~-p~~~t~~~l----------------------------l~a~~~~g~~~~a~~~~~~m~~~~~ 561 (801)
+.+-++++++..-..-. ........| ...+...+.+++|..+|+...
T Consensus 1000 p~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~---- 1075 (1666)
T KOG0985|consen 1000 PNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD---- 1075 (1666)
T ss_pred cHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc----
Confidence 55555555544321100 000000000 011222334444444444221
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHH
Q 003710 562 IVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNM 641 (801)
Q Consensus 562 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 641 (801)
.+......|| -.-+.++.|.++-++.. .+.+|..|..+-...|.+.+|.+-+=+ .+|++.|.-.+++
T Consensus 1076 --~n~~A~~VLi---e~i~~ldRA~efAe~~n---~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~ 1142 (1666)
T KOG0985|consen 1076 --MNVSAIQVLI---ENIGSLDRAYEFAERCN---EPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDV 1142 (1666)
T ss_pred --ccHHHHHHHH---HHhhhHHHHHHHHHhhC---ChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHH
Confidence 1222222222 13345555555555543 456899999998888888888776543 5788999999999
Q ss_pred HHHcCCchHHHHHHHHHHHCC
Q 003710 642 YAEAGRWEDVEQIKAIMEKEG 662 (801)
Q Consensus 642 y~~~g~~~~a~~~~~~m~~~g 662 (801)
..+.|+|++-.+++...+++.
T Consensus 1143 a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1143 ASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred HHhcCcHHHHHHHHHHHHHhh
Confidence 999999999999887766653
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=98.88 E-value=2.8e-07 Score=104.18 Aligned_cols=244 Identities=13% Similarity=0.064 Sum_probs=163.4
Q ss_pred ChHHHHHHHhcCCCC---CHHHHHHHHHHHH---------HcCCHHHHHHHHHHHhCCCCCCC-HhhHHHHHHHHHhhcC
Q 003710 387 ALKMTEKLFGSMIEK---NLVSWNAMIAAYV---------RNGQNREAMELFQDLWSEPLKPD-AMTFASILPAYAEIAT 453 (801)
Q Consensus 387 ~~~~A~~~f~~~~~~---~~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~ 453 (801)
..++|...|++..+. +...|..+..+|. ..+++++|...+++..+. .|+ ...+..+-..+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccC
Confidence 345666666665432 2334444444333 224478888888888764 453 4555556666777888
Q ss_pred hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-H
Q 003710 454 LSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES-T 532 (801)
Q Consensus 454 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t 532 (801)
+++|...++.+++.+ |+ +...|..+...+...|++++|+..+++..+ +.|+.. .
T Consensus 354 ~~~A~~~~~~Al~l~--P~---------------------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~ 408 (553)
T PRK12370 354 YIVGSLLFKQANLLS--PI---------------------SADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAA 408 (553)
T ss_pred HHHHHHHHHHHHHhC--CC---------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhh
Confidence 888888888888764 33 223455566677777888888999999988 456643 3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCcc-hHHHHHHHHH
Q 003710 533 FVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APTAR-IWGALLTASR 609 (801)
Q Consensus 533 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~-~~~~ll~~~~ 609 (801)
+..++..+...|++++|...++.+.+. ..|+ ...+..+..+|...|+.++|.+.++++.. .|+.. .++.|...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 334444566789999999999988653 2354 55678888999999999999999988653 34433 3444555556
Q ss_pred hcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710 610 KNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG 662 (801)
Q Consensus 610 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 662 (801)
..| +.+...++.+++..-..+..+..+..+|+-.|+-+.+..+ +++.+.|
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 4777777777764333232333477888888998888777 7776654
No 74
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.87 E-value=5.3e-06 Score=88.59 Aligned_cols=420 Identities=17% Similarity=0.164 Sum_probs=185.4
Q ss_pred hcCCChhHHHHHHHHHH-------HhC-CCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCCh
Q 003710 145 AGLLYLSEGEKVHGSLF-------KSG-LNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDG 216 (801)
Q Consensus 145 ~~~~~~~~a~~~~~~~~-------~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~ 216 (801)
+..|++.+++.+|+... +.| -..+-+-..+++.++. ..+.+|..+|-+-. + -..-|..|....+|
T Consensus 501 aai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn--~---te~aigmy~~lhkw 573 (1636)
T KOG3616|consen 501 AAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQN--A---TEEAIGMYQELHKW 573 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhcc--c---HHHHHHHHHHHHhH
Confidence 34455666666665443 112 1223333444444443 35677777774421 1 12345556666667
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhh-
Q 003710 217 VSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNM- 295 (801)
Q Consensus 217 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~- 295 (801)
++|+.+-+.. |.+.-...-.+-++++...|+-+.|-++- .+..-.-+.|..|.|.|....|.+.-..
T Consensus 574 de~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~ 641 (1636)
T KOG3616|consen 574 DEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALND 641 (1636)
T ss_pred HHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCH
Confidence 7776664332 22211222234445555555554443331 1111223456778888877777665422
Q ss_pred -cCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH
Q 003710 296 -IFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVAL 374 (801)
Q Consensus 296 -m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 374 (801)
....|......+..++.+...+++|-++|+++.. +...+..+-+...+.+|.++-... ++..++.
T Consensus 642 ~~l~~de~il~~ia~alik~elydkagdlfeki~d----------~dkale~fkkgdaf~kaielarfa----fp~evv~ 707 (1636)
T KOG3616|consen 642 EELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----------FDKALECFKKGDAFGKAIELARFA----FPEEVVK 707 (1636)
T ss_pred HHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhh
Confidence 1223444444455556666666666666665531 111222222222233333332211 1111111
Q ss_pred -HHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcC
Q 003710 375 -ETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIAT 453 (801)
Q Consensus 375 -~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 453 (801)
-...-+-+...|+++.|..-|-+... .---|.+-....++.+|+.+++.++.... -..-|..+..-|+..|+
T Consensus 708 lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~d 780 (1636)
T KOG3616|consen 708 LEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGD 780 (1636)
T ss_pred HHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchh
Confidence 11122223344555555444422110 01123334445566666666666554322 22234445556666666
Q ss_pred hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003710 454 LSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTF 533 (801)
Q Consensus 454 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 533 (801)
++.|.++|-+.- .++--|+||.+.|++++| .++-.+.. |-......|
T Consensus 781 fe~ae~lf~e~~---------~~~dai~my~k~~kw~da----------------------~kla~e~~--~~e~t~~~y 827 (1636)
T KOG3616|consen 781 FEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA----------------------FKLAEECH--GPEATISLY 827 (1636)
T ss_pred HHHHHHHHHhcc---------hhHHHHHHHhccccHHHH----------------------HHHHHHhc--CchhHHHHH
Confidence 666666554321 223345555555555554 55443331 212222233
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 003710 534 VSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNND 613 (801)
Q Consensus 534 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~ 613 (801)
.+-..-.-..|++.+|.+++-.+. .|+. -|.+|-+.|..++.+++.++---..-..+-..+..-+-..|+
T Consensus 828 iakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~ 897 (1636)
T KOG3616|consen 828 IAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGD 897 (1636)
T ss_pred HHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccC
Confidence 333334445555555555543321 2331 244555555555555555543211112233334444444555
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003710 614 IVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIK 655 (801)
Q Consensus 614 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 655 (801)
+..|+.-+-++ +-+-.-.|+|...|.|++|-++-
T Consensus 898 lkaae~~flea--------~d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 898 LKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHH
Confidence 55554433221 22334455555555555555444
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=4e-05 Score=80.86 Aligned_cols=261 Identities=13% Similarity=0.117 Sum_probs=147.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHH---HHHHhccCChHH--HHHHHHHH-----------HHhCCCC
Q 003710 307 MVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINL---LPSCTKLGALLE--GKSIHGYA-----------IRKGFLP 370 (801)
Q Consensus 307 li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l---l~~~~~~g~~~~--a~~~~~~~-----------~~~g~~~ 370 (801)
|...+-..|+-++|..+|....+. -.+|....... |.+.....++-. ....++.. ....-..
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~--~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~ 307 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKR--NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ 307 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHh--cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344566779999999988888775 33444222211 122222222111 11111110 0000011
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHhcCCCCC-HHHHHHHHHHHH--HcCCHHHHHHHHHHHhCCCCCCCH--hhHHHHH
Q 003710 371 NVALETALIDMYAGSGALKMTEKLFGSMIEKN-LVSWNAMIAAYV--RNGQNREAMELFQDLWSEPLKPDA--MTFASIL 445 (801)
Q Consensus 371 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll 445 (801)
...--+.|+.+|. +..+.++++-...+..- ...+.+++.... +...+.+|.+++...-+. .|+. +.....+
T Consensus 308 ~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~a 383 (652)
T KOG2376|consen 308 AIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRA 383 (652)
T ss_pred HHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHH
Confidence 2223345555554 56677777777776543 334444444332 223577888888887654 3433 3444455
Q ss_pred HHHHhhcChhhHHHHHH--------HHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHH
Q 003710 446 PAYAEIATLSDSMQIHS--------LITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQL 517 (801)
Q Consensus 446 ~a~~~~~~~~~a~~i~~--------~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l 517 (801)
......|+++.|.+++. .+.+.+..|. +..+++.+|.+.++-+.|.++ .++|+..
T Consensus 384 Ql~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~v---------------l~~Ai~~ 446 (652)
T KOG2376|consen 384 QLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAV---------------LDSAIKW 446 (652)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHH---------------HHHHHHH
Confidence 66678999999999999 5555555444 456788888888877776321 2333444
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 003710 518 FSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSA 595 (801)
Q Consensus 518 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~ 595 (801)
|+.-... .+. ..++.-+..--.+.|+-++|..+++++.+. ..++.....++|.+|++. +.+.|..+-..++..
T Consensus 447 ~~~~~t~--s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~ 520 (652)
T KOG2376|consen 447 WRKQQTG--SIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAESLSKKLPPL 520 (652)
T ss_pred HHHhccc--chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCc
Confidence 4332211 111 112222233334569999999999999862 345688899999999876 478888888877643
No 76
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.84 E-value=0.00013 Score=78.46 Aligned_cols=287 Identities=14% Similarity=0.099 Sum_probs=128.5
Q ss_pred HHHHHHHcCCChHHHHHHHhhC--CCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCCh
Q 003710 73 RALQELVSSGSMESACYLFEKM--SYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYL 150 (801)
Q Consensus 73 ~l~~~~~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 150 (801)
+.|+.|.+.|.+..|.+.-..- ...|......+..++.+..-++.|=++|+++.. +...+..+.+-..+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf 690 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAF 690 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHH
Confidence 6677888888887777654332 123444455555666666666777777776642 22233333333333
Q ss_pred hHHHHHHHHHHHhCCCCchhhH-hHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHHHHhC
Q 003710 151 SEGEKVHGSLFKSGLNSDVYVC-NSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNC 229 (801)
Q Consensus 151 ~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 229 (801)
.+|.++-.... +..++.. ..--.-+...|+++.|..-|-+.. ..---|.+......|.+|+.+++.++..
T Consensus 691 ~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 691 GKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred HHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence 34443322211 1111110 011111223344444444432211 0111233344455555555555555443
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCC--CcccHHHH
Q 003710 230 GLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPR--NIVAWNAM 307 (801)
Q Consensus 230 g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~--~~~~~~~l 307 (801)
... .--|..+..-|+..|+++.|+++|-+. ..++-.|++|.+.|.+++|.++-++...| .+++|-+-
T Consensus 762 k~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiak 830 (1636)
T KOG3616|consen 762 KTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAK 830 (1636)
T ss_pred ccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHh
Confidence 211 122344445555555555555555332 12344455566666666555555554333 22333333
Q ss_pred HHHHHhCCChhHHHHHHHHHHh---------CC-----------CCCCCh--hhHHHHHHHHhccCChHHHHHHHHHHHH
Q 003710 308 VGGYVVNAHFLESFSCLRKMLE---------DD-----------NLNPDC--ITIINLLPSCTKLGALLEGKSIHGYAIR 365 (801)
Q Consensus 308 i~~~~~~g~~~~A~~l~~~m~~---------~~-----------g~~pd~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 365 (801)
..-+-+.|++.+|.++|-.... .. ...||. .|-..+-.-+-..|++..|..-|-..
T Consensus 831 aedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea-- 908 (1636)
T KOG3616|consen 831 AEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA-- 908 (1636)
T ss_pred HHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh--
Confidence 3334444444444443322210 00 001111 12233333444455555555444322
Q ss_pred hCCCCchhHHHHHHHHHHccCChHHHHHHHhc
Q 003710 366 KGFLPNVALETALIDMYAGSGALKMTEKLFGS 397 (801)
Q Consensus 366 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 397 (801)
.-+.+-++||-.++.+++|.++-+.
T Consensus 909 -------~d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 909 -------GDFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred -------hhHHHHHHHhhhhhhHHHHHHHHhc
Confidence 1245566677777777777666543
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=5.6e-05 Score=74.52 Aligned_cols=204 Identities=14% Similarity=0.098 Sum_probs=120.4
Q ss_pred HHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHhCCCCCCCHhh-HHHHHHHH
Q 003710 377 ALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNG-------QNREAMELFQDLWSEPLKPDAMT-FASILPAY 448 (801)
Q Consensus 377 ~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~ 448 (801)
.|+-.|.+.+++.+|..+.+++....+.-|-.-...++..| ...-|.+.|+-.-..+..-|... -.++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 46667889999999999998886555444432222233333 23445666655544444444322 11223333
Q ss_pred HhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003710 449 AEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKP 528 (801)
Q Consensus 449 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 528 (801)
.-..++++..-.++.+...-...|...+ .+..+++..|++.+|.++|-+.....+ -
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~-----------------------N~AQAk~atgny~eaEelf~~is~~~i-k 425 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNL-----------------------NLAQAKLATGNYVEAEELFIRISGPEI-K 425 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhh-----------------------HHHHHHHHhcChHHHHHHHhhhcChhh-h
Confidence 3344455555554444433222332222 256778888899999999976544332 4
Q ss_pred CHHHHHHHH-HHHhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCcchHHHHH
Q 003710 529 NESTFVSLL-SSCSISGMVDEGWNYFDSMRKDYGIVPGIE-HYGCIIDLLGRIGNLDQAKRFIEEMPS-APTARIWGALL 605 (801)
Q Consensus 529 ~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll 605 (801)
|..+|.+++ .++.+.+.++.|+.++-.+.. ..+.. ..-.+.+-+.+++.+--|.+.|+.+.. .|++..|.---
T Consensus 426 n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKR 501 (557)
T KOG3785|consen 426 NKILYKSMLARCYIRNKKPQLAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEGKR 501 (557)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCCcc
Confidence 667777655 567889999999988665421 12222 233445667788888777777776654 68888897444
Q ss_pred HHH
Q 003710 606 TAS 608 (801)
Q Consensus 606 ~~~ 608 (801)
++|
T Consensus 502 GAC 504 (557)
T KOG3785|consen 502 GAC 504 (557)
T ss_pred chH
Confidence 444
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.82 E-value=4.9e-07 Score=93.41 Aligned_cols=217 Identities=12% Similarity=0.067 Sum_probs=134.3
Q ss_pred CCHHHHHHHHHHHhCCC-CCCC--HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccc
Q 003710 417 GQNREAMELFQDLWSEP-LKPD--AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR 493 (801)
Q Consensus 417 g~~~~A~~l~~~m~~~g-~~pd--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 493 (801)
+..+.++.-+.+++... ..|+ ...|...-..+...|+.+.|...+...++.. |+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~--------------------- 96 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PD--------------------- 96 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CC---------------------
Confidence 34555666666665432 2222 1234444445566677777777766666543 22
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 003710 494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCI 572 (801)
Q Consensus 494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 572 (801)
+...|+.+...|...|++++|++.|++..+ +.|+ ..++..+..++...|++++|.+.|+...+ ..|+.......
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~ 171 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALW 171 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 234566666677777777777888888887 5565 45677777788888999999988888764 35653322222
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH-------ccCCCCchhHHHHHHHHHHc
Q 003710 573 IDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVL-------SSAQDNTGCYVLLSNMYAEA 645 (801)
Q Consensus 573 i~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~y~~~ 645 (801)
...+...++.++|.+.+++....-+...|.. .......|+...+ ..++.+. ++.|.....|..|+.+|.+.
T Consensus 172 ~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~ 249 (296)
T PRK11189 172 LYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSL 249 (296)
T ss_pred HHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 3344566788899888865432212223332 1222334554333 2333333 44566677899999999999
Q ss_pred CCchHHHHHHHHHHHCCC
Q 003710 646 GRWEDVEQIKAIMEKEGL 663 (801)
Q Consensus 646 g~~~~a~~~~~~m~~~g~ 663 (801)
|++++|...|++..+.++
T Consensus 250 g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 250 GDLDEAAALFKLALANNV 267 (296)
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 999999999998876543
No 79
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=5e-06 Score=85.36 Aligned_cols=153 Identities=10% Similarity=0.082 Sum_probs=124.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHH
Q 003710 505 YAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLD 583 (801)
Q Consensus 505 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 583 (801)
+.-.|+.-.|.+-|+..+...-.++.. |.-+...|....+.++.+..|+... .+.|. ..+|-.=..++.-.++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~---~ldp~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAE---DLDPENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHH---hcCCCCCchhHhHHHHHHHHHHHH
Confidence 455688888999999998854333332 7677778999999999999999887 45665 777777778888889999
Q ss_pred HHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710 584 QAKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 584 eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 661 (801)
+|..=|++... .| +...+.-+.-+..+.+.++.+...|+...+..|.-+..|...+.++..++++++|.+.++...+.
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999998764 34 34555556666677889999999999999999999999999999999999999999999988763
No 80
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=2.6e-07 Score=89.64 Aligned_cols=233 Identities=16% Similarity=0.169 Sum_probs=177.7
Q ss_pred hHHHHHHHHHHccCChHHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHH-HHHHHH
Q 003710 373 ALETALIDMYAGSGALKMTEKLFGSMI--EKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFAS-ILPAYA 449 (801)
Q Consensus 373 ~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-ll~a~~ 449 (801)
.--+.+..+|.+.|.+.+|++.|+.-. .+-+.||-.|-..|.+-.+++.|+.+|.+-++ ..|-.+||.. ....+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHH
Confidence 334678889999999999999998763 45677888889999999999999999998876 4677777654 345566
Q ss_pred hhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003710 450 EIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN 529 (801)
Q Consensus 450 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 529 (801)
..++.+.+.++++...+.. +.+ +.+.-.+..+|.-.++++-|++.|+++++.|+. +
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~n----------------------vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-s 357 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PIN----------------------VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-S 357 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-Ccc----------------------ceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-C
Confidence 6788888888888887653 111 222233445666677788888888888888854 5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 003710 530 ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASR 609 (801)
Q Consensus 530 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~ 609 (801)
...|..+.-+|.-.+.+|-++.-|.+.... .-.|+ .-..+|-.|.....
T Consensus 358 peLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~------------------------------~aaDvWYNlg~vaV 406 (478)
T KOG1129|consen 358 PELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPG------------------------------QAADVWYNLGFVAV 406 (478)
T ss_pred hHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcc------------------------------hhhhhhhccceeEE
Confidence 667777777888888888887777766532 11111 12345666666667
Q ss_pred hcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710 610 KNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG 662 (801)
Q Consensus 610 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 662 (801)
..||+..|.+-++..+..+|++...++.|+-+-.+.|+.++|+.+++..+...
T Consensus 407 ~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 407 TIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred eccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 78999999999999999999999999999999999999999999999887753
No 81
>PRK12370 invasion protein regulator; Provisional
Probab=98.79 E-value=5.2e-07 Score=101.96 Aligned_cols=213 Identities=12% Similarity=0.097 Sum_probs=156.8
Q ss_pred CCHHHHHHHHHHHhCCCCCCCHh-hHHHHHHHHH---------hhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 003710 417 GQNREAMELFQDLWSEPLKPDAM-TFASILPAYA---------EIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKC 486 (801)
Q Consensus 417 g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~---------~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 486 (801)
+..++|+++|++..+ ..|+.. .+..+-.++. ..++.++|...++.+++.. |+
T Consensus 275 ~~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~-------------- 336 (553)
T PRK12370 275 YSLQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HN-------------- 336 (553)
T ss_pred HHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CC--------------
Confidence 346799999999986 466643 3333333322 2234678888888877654 32
Q ss_pred CCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 003710 487 GDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNE-STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG 565 (801)
Q Consensus 487 g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 565 (801)
+...|..+...+...|++++|+..|++..+ +.|+. ..+..+...+...|++++|...++...+ +.|+
T Consensus 337 -------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~ 404 (553)
T PRK12370 337 -------NPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPT 404 (553)
T ss_pred -------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCC
Confidence 334556666677778888888999999998 45764 4677788899999999999999999874 4666
Q ss_pred -hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHH
Q 003710 566 -IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTA-RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNM 641 (801)
Q Consensus 566 -~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 641 (801)
...+..+...+...|++++|.+.+++... .|+. ..+..+..++...|+.++|+..++++....|.+......+...
T Consensus 405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~ 484 (553)
T PRK12370 405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAE 484 (553)
T ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 33334455567778999999999988753 2543 4466667777899999999999999988888888888888888
Q ss_pred HHHcCCchHHHHHHHHHHHC
Q 003710 642 YAEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 642 y~~~g~~~~a~~~~~~m~~~ 661 (801)
|...| ++|...++.+.+.
T Consensus 485 ~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 485 YCQNS--ERALPTIREFLES 502 (553)
T ss_pred HhccH--HHHHHHHHHHHHH
Confidence 88888 5788877776653
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.72 E-value=3e-06 Score=91.44 Aligned_cols=230 Identities=18% Similarity=0.222 Sum_probs=150.4
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHh-----CC-CCchH-HHHHHHHHHhcCCChHHHHHHHhhcCC-------C--
Q 003710 236 FSLISALGAISIEGCLKIGKEIHCQVIKS-----GL-EMDVM-VQTSLVDMYGKCGVVDYAERLFNMIFP-------R-- 299 (801)
Q Consensus 236 ~t~~~ll~a~~~~~~~~~a~~l~~~~~~~-----g~-~~~~~-~~~~li~~y~~~g~~~~A~~lf~~m~~-------~-- 299 (801)
.|+..+...|...|+++.|.+++++.++. |. .|.+. ..+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555666777777777777777776654 21 12222 223355677777888777777776621 1
Q ss_pred --CcccHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCC-CChh-hHHHHHHHHhccCChHHHHHHHHHHHHh---CC
Q 003710 300 --NIVAWNAMVGGYVVNAHFLESFSCLRKMLED----DNLN-PDCI-TIINLLPSCTKLGALLEGKSIHGYAIRK---GF 368 (801)
Q Consensus 300 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~g~~-pd~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~---g~ 368 (801)
-..+++.|-..|.+.|++++|..++++..+- .|.. |+.. -++.+...|...+.+++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1245666677778888877776666554321 1222 2222 3556667778888888888888766552 12
Q ss_pred CC----chhHHHHHHHHHHccCChHHHHHHHhcCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCC-
Q 003710 369 LP----NVALETALIDMYAGSGALKMTEKLFGSMIEK-----------NLVSWNAMIAAYVRNGQNREAMELFQDLWSE- 432 (801)
Q Consensus 369 ~~----~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~- 432 (801)
.+ -..+++.|...|.+.|++++|+++|++.... .....|-|...|.+.+++++|.++|.+-..-
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2457888899999999999999998876321 1245677788888888888888888765321
Q ss_pred -CCCCC----HhhHHHHHHHHHhhcChhhHHHHHHHHH
Q 003710 433 -PLKPD----AMTFASILPAYAEIATLSDSMQIHSLIT 465 (801)
Q Consensus 433 -g~~pd----~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 465 (801)
-..|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 12233 3567778888888888888888888776
No 83
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=0.00038 Score=76.02 Aligned_cols=367 Identities=13% Similarity=0.052 Sum_probs=199.6
Q ss_pred HHHHcCCChHHHHHHHhhCC-CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHC-C-------C-CCCcccHHHHHHHHh
Q 003710 76 QELVSSGSMESACYLFEKMS-YLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCE-G-------F-KADYFTYPFVIKACA 145 (801)
Q Consensus 76 ~~~~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g-------~-~p~~~~~~~ll~~~~ 145 (801)
+.|..-|+.+.|.+..+-+. .. .|..|.+-|++.++.+-|.-.+-.|... | . .|+ .+=..+.-...
T Consensus 736 SfyvtiG~MD~AfksI~~IkS~~---vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAi 811 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIKSDS---VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAI 811 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHhhhH---HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHH
Confidence 45667788888877665542 11 6777777777777777776666655421 1 1 122 22222222334
Q ss_pred cCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCC-CcccHHHHHHHHHcCCChhhHHHHHH
Q 003710 146 GLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVR-DTVSWNSMIGGYCSVGDGVSSLVFFK 224 (801)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g~~~~A~~l~~ 224 (801)
..|.+++|+.++.+-.+.. .|=..|-..|.+++|.++-+.-..- =..||.-...-+-..++.+.|++.|+
T Consensus 812 eLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 6778888888887766542 3445566778888887775432100 11234444444444556666665555
Q ss_pred HH----------HhCC---------CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCC
Q 003710 225 EM----------QNCG---------LRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGV 285 (801)
Q Consensus 225 ~m----------~~~g---------~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~ 285 (801)
+- +... -.-|...|.---.-+-..|+.+.|..++..... |-+++...|-.|+
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK 953 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence 42 1111 112333344344445567888888888776543 3456666677788
Q ss_pred hHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCC-------------
Q 003710 286 VDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGA------------- 352 (801)
Q Consensus 286 ~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~------------- 352 (801)
.++|.++-++- .|....-.+..-|-..|++.+|+.+|.+.+ +|...|+.|-..+.
T Consensus 954 ~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq----------afsnAIRlcKEnd~~d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 954 TDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ----------AFSNAIRLCKENDMKDRLANLALMSGG 1021 (1416)
T ss_pred chHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH----------HHHHHHHHHHhcCHHHHHHHHHhhcCc
Confidence 88887776653 455556667777777788888887777654 34444444433221
Q ss_pred --hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCC--------------CCCHHHHHHHHHHHHHc
Q 003710 353 --LLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMI--------------EKNLVSWNAMIAAYVRN 416 (801)
Q Consensus 353 --~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--------------~~~~~~~~~li~~~~~~ 416 (801)
+-.|-..|+ +.|.. ..-.+..|-|.|.+.+|.++--+-. ..|+...+--..-|+.+
T Consensus 1022 ~d~v~aArYyE---e~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~ 1093 (1416)
T KOG3617|consen 1022 SDLVSAARYYE---ELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENN 1093 (1416)
T ss_pred hhHHHHHHHHH---Hcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhH
Confidence 111222222 11211 1223456777777777766532221 22444444444555566
Q ss_pred CCHHHHHHHHHHHhC----------CC----------------CCCCHhh----HHHHHHHHHhhcChhhHHHHHHHHHH
Q 003710 417 GQNREAMELFQDLWS----------EP----------------LKPDAMT----FASILPAYAEIATLSDSMQIHSLITK 466 (801)
Q Consensus 417 g~~~~A~~l~~~m~~----------~g----------------~~pd~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~ 466 (801)
.++++|..++-..++ +| -.|+..+ +..+-..|.+.|++..|-+-|.++-.
T Consensus 1094 ~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1094 QQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence 666666655533321 11 2233333 33444566777777766655544321
Q ss_pred hCCCCchHHHHHHHHHHHhcCCccccc
Q 003710 467 LGLVSNIYISNSIVYMYAKCGDLQTAR 493 (801)
Q Consensus 467 ~g~~~~~~~~~~li~~y~~~g~~~~A~ 493 (801)
+ -.-+.++.|.|+.++-.
T Consensus 1174 ---K------l~AMraLLKSGdt~KI~ 1191 (1416)
T KOG3617|consen 1174 ---K------LSAMRALLKSGDTQKIR 1191 (1416)
T ss_pred ---H------HHHHHHHHhcCCcceEE
Confidence 1 12456677788877765
No 84
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=0.0023 Score=78.03 Aligned_cols=442 Identities=11% Similarity=0.021 Sum_probs=250.5
Q ss_pred hHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCC--C-C----hhhHHHHHHHHhcc----CChHHH
Q 003710 186 ECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLR--Y-D----RFSLISALGAISIE----GCLKIG 254 (801)
Q Consensus 186 ~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-~----~~t~~~ll~a~~~~----~~~~~a 254 (801)
++.++++..+.--+.++ -.+...... .+.+.++++++...|+- | + .+.|..++..+... .+.+..
T Consensus 265 ~~~~~~l~~~a~~~~~~-~~l~~~l~~---~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~ 340 (903)
T PRK04841 265 LETRHFLLRCSVLRSMN-DALIVRVTG---EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQEL 340 (903)
T ss_pred HHHHHHHHHhcccccCC-HHHHHHHcC---CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHH
Confidence 44455554444333333 333444433 34456777777777751 1 1 25566666655432 123333
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCccc--HHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 003710 255 KEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVA--WNAMVGGYVVNAHFLESFSCLRKMLEDDN 332 (801)
Q Consensus 255 ~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~g 332 (801)
.++|.. ....|...|++.+|.+........+... ...........|+++.+...+..+... .
T Consensus 341 ~~lh~r---------------aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~-~ 404 (903)
T PRK04841 341 PELHRA---------------AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWE-V 404 (903)
T ss_pred HHHHHH---------------HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH-H
Confidence 334333 2334555666666666555544332211 111122344567777777776665321 1
Q ss_pred CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCC------CCc--hhHHHHHHHHHHccCChHHHHHHHhcCC----C
Q 003710 333 LNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGF------LPN--VALETALIDMYAGSGALKMTEKLFGSMI----E 400 (801)
Q Consensus 333 ~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~------~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~~~----~ 400 (801)
...+..........+...|+++++...+....+.-- .+. ......+...+...|++++|...+++.. .
T Consensus 405 ~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~ 484 (903)
T PRK04841 405 LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL 484 (903)
T ss_pred HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 111222222333444567888888888877654311 111 1222233445667899999988887642 2
Q ss_pred CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCC---CCC--HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCC
Q 003710 401 KNL----VSWNAMIAAYVRNGQNREAMELFQDLWSEPL---KPD--AMTFASILPAYAEIATLSDSMQIHSLITKLGLVS 471 (801)
Q Consensus 401 ~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 471 (801)
.+. ..++.+...+...|++++|...+.+.....- .+. ..++..+-..+...|+++.|...++......-.
T Consensus 485 ~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~- 563 (903)
T PRK04841 485 TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEE- 563 (903)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-
Confidence 222 3445566677788999999999988764211 111 223444555677889999999988876642100
Q ss_pred chHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhccCCHH
Q 003710 472 NIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREK--GIKPN--ESTFVSLLSSCSISGMVD 547 (801)
Q Consensus 472 ~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~ 547 (801)
.|..........+..+...+...|++++|...+++.... ...+. ...+..+.......|+.+
T Consensus 564 --------------~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 629 (903)
T PRK04841 564 --------------QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLD 629 (903)
T ss_pred --------------hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHH
Confidence 000000001122334455566678888888888876552 11222 223444556777899999
Q ss_pred HHHHHHHHhHHhcCCCCChHHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCcc----hHHHHHHHHHhcCCHHH
Q 003710 548 EGWNYFDSMRKDYGIVPGIEHY-----GCIIDLLGRIGNLDQAKRFIEEMPSA--PTAR----IWGALLTASRKNNDIVS 616 (801)
Q Consensus 548 ~a~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~eA~~~~~~m~~~--p~~~----~~~~ll~~~~~~g~~~~ 616 (801)
+|.+.++..............+ ......+...|+.++|.+++...... .... .+..+..++...|+.+.
T Consensus 630 ~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 709 (903)
T PRK04841 630 NARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDE 709 (903)
T ss_pred HHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHH
Confidence 9999988875431111111111 11224456689999999998776532 1111 13456667788899999
Q ss_pred HHHHHHHHHccCC------CCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710 617 AEFAARHVLSSAQ------DNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG 662 (801)
Q Consensus 617 a~~~~~~~~~~~p------~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 662 (801)
|...++++++... ....++..++.+|...|+.++|...+.+..+..
T Consensus 710 A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 710 AEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999998886421 123467788999999999999999998887643
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.61 E-value=0.00027 Score=79.02 Aligned_cols=160 Identities=12% Similarity=-0.002 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003710 496 VSWNVIIMAYAIHGLGKISIQLFSEMREK-GIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIID 574 (801)
Q Consensus 496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 574 (801)
..|.+.....-..+.++.|.++..+.+.- ..+-|..+|+.+.. ..|++.-+..-|+......+..|...-=..+..
T Consensus 968 fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~---~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt 1044 (1238)
T KOG1127|consen 968 FAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKP---DAGRLELSLGEFESAKKASWKEWMEVDEDIRGT 1044 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh---hhhhhhhhhcchhhHhhhhcccchhHHHHHhhh
Confidence 44555555555555666666555553321 01233444443211 122223333333333222233332211112222
Q ss_pred HH--HhcCCHHHHHHHHHhCCC----CCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCC
Q 003710 575 LL--GRIGNLDQAKRFIEEMPS----APTA-RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGR 647 (801)
Q Consensus 575 ~~--~~~g~~~eA~~~~~~m~~----~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 647 (801)
.+ .-.|+++++.+.|++... +.+. +....++-.....+..+.|....-+...+.|.+......|.-+|.-..+
T Consensus 1045 ~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~d 1124 (1238)
T KOG1127|consen 1045 DLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDAD 1124 (1238)
T ss_pred hHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhh
Confidence 22 225677777777776643 2332 3333344444556666777777777777777777666666666654444
Q ss_pred chHHHHHHHHH
Q 003710 648 WEDVEQIKAIM 658 (801)
Q Consensus 648 ~~~a~~~~~~m 658 (801)
-....-+.+++
T Consensus 1125 a~~ssaileel 1135 (1238)
T KOG1127|consen 1125 AHGSSAILEEL 1135 (1238)
T ss_pred hhhhHHHHHHH
Confidence 33333333333
No 86
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=3.4e-06 Score=82.05 Aligned_cols=220 Identities=12% Similarity=0.017 Sum_probs=104.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcC
Q 003710 104 VVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLG 183 (801)
Q Consensus 104 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 183 (801)
-|-++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-++|.+......|..++..-++.- +-|+....-+...+-..+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHHH
Confidence 3555555666666666555554443 3444455555555655555555555555444331 223333333444444555
Q ss_pred CchHHHHhhccCC---CCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHH
Q 003710 184 CVECAERMFDEMP---VRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQ 260 (801)
Q Consensus 184 ~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~ 260 (801)
+.++|.++++... .-|+.+...+..+|.-.++++-|+..|+++...|+. +...|..+--+|.-.++++.+.--|..
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 5555555555543 124444444555555555566666666665555543 333444444444445555555554444
Q ss_pred HHHhCCCCc--hHHHHHHHHHHhcCCChHHHHHHHhhcCCC---CcccHHHHHHHHHhCCChhHHHHHHHHH
Q 003710 261 VIKSGLEMD--VMVQTSLVDMYGKCGVVDYAERLFNMIFPR---NIVAWNAMVGGYVVNAHFLESFSCLRKM 327 (801)
Q Consensus 261 ~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~lf~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m 327 (801)
.+..--.|+ ..+|-.|-......||+..|.+-|+-.... +..++|.+.-.-.+.|+.++|..++...
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 443322222 222333333344445555555555443221 2233444444444444444444444443
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.60 E-value=2.3e-05 Score=80.99 Aligned_cols=200 Identities=9% Similarity=-0.047 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC-CHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHH
Q 003710 404 VSWNAMIAAYVRNGQNREAMELFQDLWSEPLKP-DAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYM 482 (801)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 482 (801)
..|..+...|...|+.++|...|++..+. .| +...|..+-..+...|+++.|.+.++..++.. |+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~---------- 130 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PT---------- 130 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC----------
Confidence 45666777778888888888888887764 34 35667777777888888888888888877643 33
Q ss_pred HHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 003710 483 YAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGI 562 (801)
Q Consensus 483 y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 562 (801)
+..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|+.... ..
T Consensus 131 -----------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~ 195 (296)
T PRK11189 131 -----------YNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KL 195 (296)
T ss_pred -----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hC
Confidence 223466666777778888888999999887 456654222222234456789999999976543 23
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCch
Q 003710 563 VPGIEHYGCIIDLLGRIGNLDQAKRFIEEM-PSA-----PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTG 633 (801)
Q Consensus 563 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 633 (801)
.|+...+ .++..+......+++.+.+.+- ... .....|..|...+...|+.++|+..++++++++|.+..
T Consensus 196 ~~~~~~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 196 DKEQWGW-NIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CccccHH-HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 3432222 3333333222223334333322 111 12457888999999999999999999999999986544
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.58 E-value=4.8e-05 Score=83.26 Aligned_cols=284 Identities=15% Similarity=0.126 Sum_probs=167.3
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCH---HHHHHHHHHHHHc-----C
Q 003710 346 SCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNL---VSWNAMIAAYVRN-----G 417 (801)
Q Consensus 346 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~-----g 417 (801)
.+...|+.++|.+.+..-.+. +.....+.......|.+.|+.++|..++..+.++|+ .-|..+..+.... .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 345667777777776543332 233345556666777777777777777777654322 2333444443221 2
Q ss_pred CHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcC-hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHH
Q 003710 418 QNREAMELFQDLWSEPLKPDAMTFASILPAYAEIAT-LSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVV 496 (801)
Q Consensus 418 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~ 496 (801)
..+...++|+++... -|.......+.-.+..... -..+......+.+.|+++ +++.|-..|.
T Consensus 92 ~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~------------ 154 (517)
T PF12569_consen 92 DVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYK------------ 154 (517)
T ss_pred cHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHc------------
Confidence 455666666666543 2433333222111111111 123334444445555433 3333433443
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 003710 497 SWNVIIMAYAIHGLGKISIQLFSEMREK----G----------IKPNES--TFVSLLSSCSISGMVDEGWNYFDSMRKDY 560 (801)
Q Consensus 497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 560 (801)
...+..-..+++...... | -.|... ++.-+...+.+.|++++|+++.+...
T Consensus 155 ----------d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI--- 221 (517)
T PF12569_consen 155 ----------DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI--- 221 (517)
T ss_pred ----------ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---
Confidence 222222223343333321 1 123332 34555667788999999999999877
Q ss_pred CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccC--CCC----
Q 003710 561 GIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSA--QDN---- 631 (801)
Q Consensus 561 ~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~---- 631 (801)
...|+ ++.|..-...|-+.|++++|.+.++.... .-|-.+-+-....+.+.|+.++|+.++....+-+ |..
T Consensus 222 ~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~ 301 (517)
T PF12569_consen 222 EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLND 301 (517)
T ss_pred hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHH
Confidence 45788 88999999999999999999999988764 2444455556667788999999999988876654 221
Q ss_pred ---chhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 632 ---TGCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 632 ---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
.....--+.+|.+.|++..|.+.+..+.+
T Consensus 302 mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 302 MQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11234668899999999999887766644
No 89
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=4.8e-05 Score=82.74 Aligned_cols=396 Identities=13% Similarity=0.093 Sum_probs=213.2
Q ss_pred CchhhHhHHHHH--HHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHHHHhC-C--------CCCCh
Q 003710 167 SDVYVCNSLIVM--YMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNC-G--------LRYDR 235 (801)
Q Consensus 167 ~~~~~~~~li~~--y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g--------~~p~~ 235 (801)
-|..+-.++++. |..-|+.|.|.+-.+.+. ....|..|.+.+++..+.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 355566666653 667788888877766654 3456888888888888877777777666432 1 1222
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC-CCcccHHHHHHHHHhC
Q 003710 236 FSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP-RNIVAWNAMVGGYVVN 314 (801)
Q Consensus 236 ~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~-~~~~~~~~li~~~~~~ 314 (801)
.+=.-+.-.....|.+++|+.++.+..+.. .|=..|-..|.+++|.++-+.=.. .=-.+|.....-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 222222222346788888888888877653 234556777888888887654211 0112444445555556
Q ss_pred CChhHHHHHHHHHHh----------C-C-------CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 003710 315 AHFLESFSCLRKMLE----------D-D-------NLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALET 376 (801)
Q Consensus 315 g~~~~A~~l~~~m~~----------~-~-------g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 376 (801)
++.+.|++.|++-.. + . .-.-|...|.-.-.-.-..|+++.|..++..+.+ |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 777777777765411 1 0 0011222233333333445666666666554433 34
Q ss_pred HHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhh
Q 003710 377 ALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSD 456 (801)
Q Consensus 377 ~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 456 (801)
+++...|-.|+.++|-++-++- .|....-.+...|-..|++.+|..+|.+.+ +|...|+.|-..+.-++
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDR 1011 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHH
Confidence 4555556667777777766543 344455567778888889999999888764 45555555544332221
Q ss_pred HHHH------------HHHHHHhCCCCchHHHHHHHHHHHhcCCccccc-----------------------hHHHHHHH
Q 003710 457 SMQI------------HSLITKLGLVSNIYISNSIVYMYAKCGDLQTAR-----------------------DVVSWNVI 501 (801)
Q Consensus 457 a~~i------------~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-----------------------d~~~~~~l 501 (801)
-..+ -.+..+.|.. ..--+..|-|.|.+..|. |....+--
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 1110 0111111111 112344566666666664 33333444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHH
Q 003710 502 IMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG----IEHYGCIIDLLG 577 (801)
Q Consensus 502 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~ 577 (801)
..-+..+.++++|..++-..++ |...+..|...| +.-..++-+.|.-...-.|+ ......+.+.+.
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~ 1156 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCL 1156 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHH
Confidence 4445555666666655544433 333343343322 22222333333221112232 345667778888
Q ss_pred hcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH
Q 003710 578 RIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIV 615 (801)
Q Consensus 578 ~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 615 (801)
++|.+.-|-+=|.+...+ ...+.++.+.||.+
T Consensus 1157 qQG~Yh~AtKKfTQAGdK------l~AMraLLKSGdt~ 1188 (1416)
T KOG3617|consen 1157 QQGAYHAATKKFTQAGDK------LSAMRALLKSGDTQ 1188 (1416)
T ss_pred hccchHHHHHHHhhhhhH------HHHHHHHHhcCCcc
Confidence 888888887777665432 12344555566554
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.9e-05 Score=81.13 Aligned_cols=224 Identities=12% Similarity=0.060 Sum_probs=139.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHH-HHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 003710 408 AMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFA-SILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKC 486 (801)
Q Consensus 408 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 486 (801)
.+....-+..++..|++-+....... ...||. ..-.++...|........-...++.|... ..-|+-+...++
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~-- 302 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALA-- 302 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHH--
Confidence 34445555566666666666665532 333333 33344556666655555555554444221 112222222222
Q ss_pred CCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 003710 487 GDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGI 566 (801)
Q Consensus 487 g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 566 (801)
-+..+|...++++.|+..|++....-..||..+ +....+++....+... -+.|..
T Consensus 303 -------------r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~ 357 (539)
T KOG0548|consen 303 -------------RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEK 357 (539)
T ss_pred -------------HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhH
Confidence 244567777888999999998776555554322 2223344444433322 344542
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 003710 567 -EHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYA 643 (801)
Q Consensus 567 -~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 643 (801)
.-.-.=...+.+.|++.+|.+.+.++.. .| |...|.....++.+.|++..|..-++..++++|+....|..-+-++.
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 1122226667788899999988888754 34 56777777778888899999998899999999988888888888888
Q ss_pred HcCCchHHHHHHHHHHHCC
Q 003710 644 EAGRWEDVEQIKAIMEKEG 662 (801)
Q Consensus 644 ~~g~~~~a~~~~~~m~~~g 662 (801)
...+|++|.+.+..-.+.+
T Consensus 438 ~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 8889999998887766543
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.54 E-value=0.00034 Score=76.69 Aligned_cols=262 Identities=14% Similarity=0.122 Sum_probs=135.0
Q ss_pred HHHHHHHHHccCChHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhh
Q 003710 375 ETALIDMYAGSGALKMTEKLFGSMIEK---NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEI 451 (801)
Q Consensus 375 ~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 451 (801)
+.-|...|-..|+.++|.+..++..+. .+..|..-...|-+.|++.+|.+.++..+... .-|...-+.....+.+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHC
Confidence 344566677777777777777766433 23456666677777777777777777776532 22444444455666677
Q ss_pred cChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHC--CC-
Q 003710 452 ATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSW--NVIIMAYAIHGLGKISIQLFSEMREK--GI- 526 (801)
Q Consensus 452 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~--g~- 526 (801)
|+.++|.++.....+.+..|- +-|.+|- ..| ..-..+|.+.|++..|++.|....+. .+
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~----~~L~~mQ------------c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~ 339 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPL----SNLNDMQ------------CMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFE 339 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcc----cCHHHHH------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 777777777777766553221 1111111 123 33456777888888777666554331 01
Q ss_pred --CCC----------HHHHHHHHHHHhccCC-------HHHHHHHHHHhHHhcCCCCCh-----------HHHHHHHHHH
Q 003710 527 --KPN----------ESTFVSLLSSCSISGM-------VDEGWNYFDSMRKDYGIVPGI-----------EHYGCIIDLL 576 (801)
Q Consensus 527 --~p~----------~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~~-----------~~~~~li~~~ 576 (801)
+-| ..+|..+|.-.-+... ...|.+++-.+.......... .--..+-.-.
T Consensus 340 ~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~ 419 (517)
T PF12569_consen 340 EDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKA 419 (517)
T ss_pred cccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHH
Confidence 122 2233333332221111 122333333332210000000 0000000000
Q ss_pred ---HhcCCHHHHHHHHHh-----------C----CCCCCcchHH-HHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHH
Q 003710 577 ---GRIGNLDQAKRFIEE-----------M----PSAPTARIWG-ALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVL 637 (801)
Q Consensus 577 ---~~~g~~~eA~~~~~~-----------m----~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 637 (801)
.+...-+++...-.+ . +.+.|..... .|+ ....=++.|.+.++-+.+..|++..+|.+
T Consensus 420 kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~l 496 (517)
T PF12569_consen 420 KKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLL 496 (517)
T ss_pred HHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHHHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHH
Confidence 011111111111100 0 1112222222 122 12234678999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHH
Q 003710 638 LSNMYAEAGRWEDVEQIKA 656 (801)
Q Consensus 638 l~~~y~~~g~~~~a~~~~~ 656 (801)
--.+|.+.|++--|.+.+.
T Consensus 497 aFeVy~Rk~K~LLaLqaL~ 515 (517)
T PF12569_consen 497 AFEVYLRKGKYLLALQALK 515 (517)
T ss_pred HhHHHHhcCcHHHHHHHHH
Confidence 9999999999988887654
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.54 E-value=0.00018 Score=80.43 Aligned_cols=552 Identities=13% Similarity=-0.008 Sum_probs=264.1
Q ss_pred hHHHHHHHhhCCCCCh---hhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHHHHHHH
Q 003710 84 MESACYLFEKMSYLDT---YIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSL 160 (801)
Q Consensus 84 ~~~A~~~f~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 160 (801)
...|...|-+..+.|+ ..|..|-..|...-+...|.+.|.+..+.. .-|......+...+++..+++.|..+. +
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~--l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC--L 550 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH--H
Confidence 4444444444333332 256666666666556667777777766543 234445566667777777777776662 1
Q ss_pred HHhCCCC---chhhHhHHHHHHHhcCCchHHHHhhccCC---CCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCC
Q 003710 161 FKSGLNS---DVYVCNSLIVMYMKLGCVECAERMFDEMP---VRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYD 234 (801)
Q Consensus 161 ~~~g~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 234 (801)
......| -..-|-.+--.|.+.++...|..-|+... ..|...|..+..+|...|++..|+++|.+... +.|+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH
Confidence 1111111 11112222233555666666666666543 34778899999999999999999999987754 4454
Q ss_pred hhhHHHHHHH--HhccCChHHHHHHHHHHHHhC------CCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC--------
Q 003710 235 RFSLISALGA--ISIEGCLKIGKEIHCQVIKSG------LEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP-------- 298 (801)
Q Consensus 235 ~~t~~~ll~a--~~~~~~~~~a~~l~~~~~~~g------~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~-------- 298 (801)
. +|.....+ -+..|.++++...++.++..- ...-..++-.+...+.-.|-...|...|+.-.+
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3 33333222 356788888888777766431 111111222222222222333334444433211
Q ss_pred ---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCCh---H---HHHHHHHHHHHhCCC
Q 003710 299 ---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGAL---L---EGKSIHGYAIRKGFL 369 (801)
Q Consensus 299 ---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~---~---~a~~~~~~~~~~g~~ 369 (801)
.|...|-.+ ..|..+|.... - . .|+......+..-.-+.+.. + .|.+.+..-. .+.
T Consensus 708 ~~~~~~~~Wi~a----------sdac~~f~q~e-~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~ 772 (1238)
T KOG1127|consen 708 SLQSDRLQWIVA----------SDACYIFSQEE-P-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLA 772 (1238)
T ss_pred hhhhhHHHHHHH----------hHHHHHHHHhc-c-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHh
Confidence 122222222 12223333222 0 1 22222222222212222222 1 1111111001 111
Q ss_pred CchhHHHHHHHHHHc----cC----ChHHHHHHHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCH
Q 003710 370 PNVALETALIDMYAG----SG----ALKMTEKLFGSMI---EKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDA 438 (801)
Q Consensus 370 ~~~~~~~~Li~~y~k----~g----~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 438 (801)
.+...|..|..-|.+ +| +...|...+...+ ..+..+||.|-.. ...|.+.-|...|-+-... .+-..
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~ 850 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCH 850 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccch
Confidence 112222222222221 11 2234444444332 3355666665443 3334444444444433322 12233
Q ss_pred hhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC-----------------CccccchHHHHHHH
Q 003710 439 MTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCG-----------------DLQTARDVVSWNVI 501 (801)
Q Consensus 439 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g-----------------~~~~A~d~~~~~~l 501 (801)
.+|..+--.|....+++.|.+.+...+... +.+..-+-.........| .-.+|.+..-|-.-
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 444444444445555555555555544322 111111111100011111 11122233334444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH-
Q 003710 502 IMAYAIHGLGKISIQLFSEMRE---------KGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGC- 571 (801)
Q Consensus 502 i~~~~~~g~~~~A~~l~~~m~~---------~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~- 571 (801)
..-..++|+.++-+...++.-. .|.+-+...|.......-+.+.++.|.+...+...-...+-+...|+.
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva 1009 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA 1009 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 4444556665554444333221 133344567888888888888888887777665433223344555653
Q ss_pred ---HHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHH---HHHHHHHHc
Q 003710 572 ---IIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYV---LLSNMYAEA 645 (801)
Q Consensus 572 ---li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~y~~~ 645 (801)
...++...|.++.|..-+...+.+.+..+..+-+.. .-.|+++.+...+++++.+...+...-+ .++.....+
T Consensus 1010 k~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~ 1088 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLA 1088 (1238)
T ss_pred hhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhc
Confidence 345566678888888777766655555444444433 4468999999999999987655444223 333444566
Q ss_pred CCchHHHHHHHHHHH
Q 003710 646 GRWEDVEQIKAIMEK 660 (801)
Q Consensus 646 g~~~~a~~~~~~m~~ 660 (801)
+.-+.|....-+...
T Consensus 1089 ~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1089 RQKNDAQFLLFEVKS 1103 (1238)
T ss_pred ccchHHHHHHHHHHH
Confidence 667777766555444
No 93
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=0.00083 Score=68.04 Aligned_cols=156 Identities=12% Similarity=0.045 Sum_probs=86.4
Q ss_pred HHHccCChHHHHHHHhcCC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHH-HHHHh-hcChh
Q 003710 381 MYAGSGALKMTEKLFGSMI--E-KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASIL-PAYAE-IATLS 455 (801)
Q Consensus 381 ~y~k~g~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~-~~~~~ 455 (801)
.+...|+.++|.--|+... . -+..+|.-++.+|...|.+.||.-+-++..+. +.-+..+.+.+- ..|.. ...-+
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHH
Confidence 3445566777666666442 2 25667777777777777777776665554332 222333333321 12221 22245
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003710 456 DSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVS 535 (801)
Q Consensus 456 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 535 (801)
+|..+++...+. .|+- +-.-+.+..-+...|+.++++.+++.-+. ..||....+.
T Consensus 422 KAKkf~ek~L~~--~P~Y---------------------~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~ 476 (564)
T KOG1174|consen 422 KAKKFAEKSLKI--NPIY---------------------TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNH 476 (564)
T ss_pred HHHHHHHhhhcc--CCcc---------------------HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHH
Confidence 566666555443 2221 01123333444455556666777777666 5677777777
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 003710 536 LLSSCSISGMVDEGWNYFDSMRKDYGIVPG 565 (801)
Q Consensus 536 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 565 (801)
|...+...+.+++|.+.|.... .+.|+
T Consensus 477 Lgd~~~A~Ne~Q~am~~y~~AL---r~dP~ 503 (564)
T KOG1174|consen 477 LGDIMRAQNEPQKAMEYYYKAL---RQDPK 503 (564)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH---hcCcc
Confidence 7777777777777777777655 34554
No 94
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.52 E-value=0.0011 Score=71.14 Aligned_cols=427 Identities=12% Similarity=0.065 Sum_probs=255.4
Q ss_pred cCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHH
Q 003710 212 SVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAER 291 (801)
Q Consensus 212 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 291 (801)
..+++...+.+.+..... ..-...|....--.+...|+.++|.......++..+ .+.+.|..+.-.+-...++++|.+
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHH
Confidence 345666666666666552 222223333222234556777777777766665432 233445555555555678888888
Q ss_pred HHhhc---CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 003710 292 LFNMI---FPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPD-CITIINLLPSCTKLGALLEGKSIHGYAIRKG 367 (801)
Q Consensus 292 lf~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 367 (801)
-|... ...|...|..+---=.+.++++.....-....+. .|. ...|.....+.--.|+...|..+.++..+..
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql---~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL---RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88765 2345566666655556667777666666665543 343 3456666667777889999999998888765
Q ss_pred C-CCchhHHHHHH------HHHHccCChHHHHHHHhcCCCC--CHH-HHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCC
Q 003710 368 F-LPNVALETALI------DMYAGSGALKMTEKLFGSMIEK--NLV-SWNAMIAAYVRNGQNREAMELFQDLWSEPLKPD 437 (801)
Q Consensus 368 ~-~~~~~~~~~Li------~~y~k~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 437 (801)
. .|+...+.-.. ....+.|..++|.+.+...... |-. .-.+....+.+.+++++|..++..++.. .||
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 3 45544443222 2235678888888777654332 222 2334556778889999999999999874 588
Q ss_pred HhhHHHHHHHHH-hhcCh-hhHHHHHHHHHHhC---CCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHc-CCH
Q 003710 438 AMTFASILPAYA-EIATL-SDSMQIHSLITKLG---LVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIH-GLG 511 (801)
Q Consensus 438 ~~t~~~ll~a~~-~~~~~-~~a~~i~~~~~~~g---~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~-g~~ 511 (801)
..-|.-.+..+. +..+. +....++....+.- ..|-...-+ .... ...
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls---------------------------vl~~eel~ 304 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS---------------------------VLNGEELK 304 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH---------------------------HhCcchhH
Confidence 887777666554 23332 22224554444321 111100000 0011 112
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH----HHHHHHHHhHHh--------cCC-CCC--hHHHHHHHHHH
Q 003710 512 KISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVD----EGWNYFDSMRKD--------YGI-VPG--IEHYGCIIDLL 576 (801)
Q Consensus 512 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~----~a~~~~~~m~~~--------~~~-~p~--~~~~~~li~~~ 576 (801)
+..-+++..+.+.|+.|--..+.+|.. .-...+ -+..+...+... ... .|. ..++-.++..|
T Consensus 305 ~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~ 381 (700)
T KOG1156|consen 305 EIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHY 381 (700)
T ss_pred HHHHHHHHHHhhcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHH
Confidence 223466777788887664333333322 211111 122222222111 001 344 44566788899
Q ss_pred HhcCCHHHHHHHHHhCCCC-CCc-chHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003710 577 GRIGNLDQAKRFIEEMPSA-PTA-RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQI 654 (801)
Q Consensus 577 ~~~g~~~eA~~~~~~m~~~-p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 654 (801)
-+.|+++.|..+++..... |+. ..|..=...+...|+.+.|-..++.+.+++-.|...-.--++-..++.+.++|.++
T Consensus 382 D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 382 DKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEV 461 (700)
T ss_pred HHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHH
Confidence 9999999999999987642 443 22333346678889999999999999999988776655667777889999999999
Q ss_pred HHHHHHCCCcc-----CCcccEEEEC
Q 003710 655 KAIMEKEGLKK-----TTGCSMFEKN 675 (801)
Q Consensus 655 ~~~m~~~g~~~-----~~~~s~~~~~ 675 (801)
.......|..- +..|.|..++
T Consensus 462 ~skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 462 LSKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHhhhcccchhhhHHHhhhHHHhHh
Confidence 98887766421 3457786553
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.50 E-value=0.00014 Score=71.63 Aligned_cols=315 Identities=12% Similarity=0.085 Sum_probs=165.4
Q ss_pred HHHHhcCCChHHHHHHHhhcCCCCcccHHHHH---HHHHhCCChhHHHHHHHHHHhCCCCCCChhhHH-HHHHHHhccCC
Q 003710 277 VDMYGKCGVVDYAERLFNMIFPRNIVAWNAMV---GGYVVNAHFLESFSCLRKMLEDDNLNPDCITII-NLLPSCTKLGA 352 (801)
Q Consensus 277 i~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~-~ll~~~~~~g~ 352 (801)
-..+...|++.+|+.-|....+-|...|-++. ..|...|+..-|+.-|.+..+ .+||...-. .--..+.+.|.
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhhccc
Confidence 34445567777888888777777777776664 357777777777777777763 466643211 11122334445
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q 003710 353 LLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSE 432 (801)
Q Consensus 353 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 432 (801)
++.|..-|+.+++..-..+ ....++.+.-..++-+. ....+..+..+|+...|++....+++
T Consensus 122 le~A~~DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~llE- 183 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNG-----LVLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITHLLE- 183 (504)
T ss_pred HHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHHHHh-
Confidence 5555544444444321100 00111111111111111 11223334445666666666666554
Q ss_pred CCCCC-HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCH
Q 003710 433 PLKPD-AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLG 511 (801)
Q Consensus 433 g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~ 511 (801)
+.|= ...+..=-.+|...|.+..|..=+..+.+..-. +....--+-..+...|+.
T Consensus 184 -i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-----------------------nTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 184 -IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-----------------------NTEGHYKISQLLYTVGDA 239 (504)
T ss_pred -cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-----------------------chHHHHHHHHHHHhhhhH
Confidence 3332 222222233444445554444433333332211 122233333445555666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003710 512 KISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEE 591 (801)
Q Consensus 512 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 591 (801)
+.++...++.++ +.||...... .-..+.+..+.++.|.+ ..+.++|.++++-.++
T Consensus 240 ~~sL~~iRECLK--ldpdHK~Cf~------~YKklkKv~K~les~e~-----------------~ie~~~~t~cle~ge~ 294 (504)
T KOG0624|consen 240 ENSLKEIRECLK--LDPDHKLCFP------FYKKLKKVVKSLESAEQ-----------------AIEEKHWTECLEAGEK 294 (504)
T ss_pred HHHHHHHHHHHc--cCcchhhHHH------HHHHHHHHHHHHHHHHH-----------------HHhhhhHHHHHHHHHH
Confidence 666777777666 5676543211 11122333333333332 2344555555555544
Q ss_pred C-CCCCCc-----chHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710 592 M-PSAPTA-----RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 592 m-~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 661 (801)
. ..+|.. ..+..+-..++..|++.+|++...++++++|+|..++..-+.+|.-...+++|..-++...+.
T Consensus 295 vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 295 VLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 3 223431 223334445567788889999999999999999888888888998888888888888877663
No 96
>PF12854 PPR_1: PPR repeat
Probab=98.50 E-value=1e-07 Score=61.60 Aligned_cols=33 Identities=45% Similarity=0.575 Sum_probs=25.9
Q ss_pred CCCCchhhHhHHHHHHHhcCCchHHHHhhccCC
Q 003710 164 GLNSDVYVCNSLIVMYMKLGCVECAERMFDEMP 196 (801)
Q Consensus 164 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 196 (801)
|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677788888888888888888888888887774
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.50 E-value=2.1e-05 Score=78.76 Aligned_cols=166 Identities=14% Similarity=-0.007 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHH
Q 003710 494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNE----STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEH 568 (801)
Q Consensus 494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~ 568 (801)
....+..++..+...|++++|+..|++.... .|+. .++..+..++...|++++|...++.+.+.+.-.|. ...
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 5567788888899999999999999999873 4543 35677788999999999999999999865433333 224
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHhCCC-CCCc-chHH-----------------HHHHHHHhcCCHHHHHHHH
Q 003710 569 YGCIIDLLGRI--------GNLDQAKRFIEEMPS-APTA-RIWG-----------------ALLTASRKNNDIVSAEFAA 621 (801)
Q Consensus 569 ~~~li~~~~~~--------g~~~eA~~~~~~m~~-~p~~-~~~~-----------------~ll~~~~~~g~~~~a~~~~ 621 (801)
+..+...+... |+.++|.+.++++.. .|+. ..+. .+...+...|+.+.|...+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 55566666654 789999999998754 3543 2332 2334567789999999999
Q ss_pred HHHHccCCCC---chhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710 622 RHVLSSAQDN---TGCYVLLSNMYAEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 622 ~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 661 (801)
+++++..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999987764 468899999999999999999999888764
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.47 E-value=8.7e-06 Score=82.90 Aligned_cols=247 Identities=11% Similarity=0.025 Sum_probs=146.1
Q ss_pred HHHHccCChHHHHHHHh--cCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhh
Q 003710 380 DMYAGSGALKMTEKLFG--SMIEK-NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSD 456 (801)
Q Consensus 380 ~~y~k~g~~~~A~~~f~--~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 456 (801)
+-+.-.|.+..+..-.+ ..... +.....-+.++|...|+++.++. +..... .|....+..+...+....+-+.
T Consensus 9 rn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 34455788888875444 11111 23345556788888898776553 333332 5665555444443433233333
Q ss_pred HHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003710 457 SMQIHSLITKLGLV-SNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVS 535 (801)
Q Consensus 457 a~~i~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 535 (801)
+..-+......... .+..+.-... ..+...|++++|++++++- .+......
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A----------------------~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAA----------------------TILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHH----------------------HHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHH----------------------HHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 33333222211111 1211111112 2234456666667776542 34455566
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHh
Q 003710 536 LLSSCSISGMVDEGWNYFDSMRKDYGIVPGI---EHYGCIIDLLGRIGNLDQAKRFIEEMPSA--PTARIWGALLTASRK 610 (801)
Q Consensus 536 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~eA~~~~~~m~~~--p~~~~~~~ll~~~~~ 610 (801)
.+..+.+.++++.|.+.++.|.+ +..|. ....+.+..+.-.+.+.+|..+|+++..+ +++.+.+.+..+...
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~ 213 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ 213 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 67788888888888888888863 34442 22333344444445688899999887654 556667777778888
Q ss_pred cCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCc-hHHHHHHHHHHHC
Q 003710 611 NNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRW-EDVEQIKAIMEKE 661 (801)
Q Consensus 611 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~~m~~~ 661 (801)
.|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++..++..
T Consensus 214 ~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 214 LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999999999999988899888999998 6677888887763
No 99
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.47 E-value=3.2e-05 Score=72.23 Aligned_cols=200 Identities=12% Similarity=0.073 Sum_probs=141.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCC-HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003710 406 WNAMIAAYVRNGQNREAMELFQDLWSEPLKPD-AMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYA 484 (801)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 484 (801)
...+.-+|.+.|++..|..-+++.++. .|+ ..++..+-..|.+.|..+.|.+-|+...+.. +.+.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~G----------- 103 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNG----------- 103 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCcc-----------
Confidence 334556677777777777777777654 343 3455566666667777777777777766543 1122
Q ss_pred hcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 003710 485 KCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIV 563 (801)
Q Consensus 485 ~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 563 (801)
...|....-+|..|++++|...|++......-|. ..||..+.-+..+.|+.+.|..+|++..+ ..
T Consensus 104 -----------dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~d 169 (250)
T COG3063 104 -----------DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LD 169 (250)
T ss_pred -----------chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hC
Confidence 2334455566777788888999999887543333 35788888888889999999999998764 45
Q ss_pred CC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCch
Q 003710 564 PG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTG 633 (801)
Q Consensus 564 p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 633 (801)
|+ ....-.|.+...+.|++-+|..+++.... .++..+.-..+..-...||.+.+-+.-.++.+..|....
T Consensus 170 p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 170 PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 66 77788899999999999999999887654 355555555566677789988888888888888887554
No 100
>PF12854 PPR_1: PPR repeat
Probab=98.40 E-value=4.7e-07 Score=58.48 Aligned_cols=32 Identities=31% Similarity=0.575 Sum_probs=19.7
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 003710 561 GIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEM 592 (801)
Q Consensus 561 ~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m 592 (801)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55566666666666666666666666666655
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.37 E-value=8.4e-06 Score=73.98 Aligned_cols=122 Identities=8% Similarity=-0.061 Sum_probs=97.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 003710 515 IQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMP 593 (801)
Q Consensus 515 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~ 593 (801)
..+|++.++ +.|+. +..+..++...|++++|...|+... .+.|+ ...|..+..++.+.|++++|...+++..
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356666666 45664 4556777888999999999999887 45565 7888889999999999999999998875
Q ss_pred C--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 003710 594 S--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYA 643 (801)
Q Consensus 594 ~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 643 (801)
. ..+...|..+..++...|+.++|...+++++++.|+++..+...+++..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4 3456778888888889999999999999999999999888877766554
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.36 E-value=8.6e-06 Score=85.74 Aligned_cols=226 Identities=13% Similarity=0.119 Sum_probs=153.0
Q ss_pred HHccCChHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHh-hHHHHHHHHHhhcChhhH
Q 003710 382 YAGSGALKMTEKLFGSMIEK---NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAM-TFASILPAYAEIATLSDS 457 (801)
Q Consensus 382 y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a 457 (801)
+.+.|++.+|.-.|+..+.+ +...|--|...-+.+++-..|+..+++.++ +.|+.. .+..|--.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHHH
Confidence 45677788888888776544 456788888888888888888888888765 455432 222232333333333333
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003710 458 MQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLL 537 (801)
Q Consensus 458 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 537 (801)
...+..-++...+- .+ ....+ ++..+=..
T Consensus 373 l~~L~~Wi~~~p~y---------------------------------------------~~--l~~a~--~~~~~~~~-- 401 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKY---------------------------------------------VH--LVSAG--ENEDFENT-- 401 (579)
T ss_pred HHHHHHHHHhCccc---------------------------------------------hh--ccccC--ccccccCC--
Confidence 33333332221100 00 00000 00000000
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCHH
Q 003710 538 SSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDIV 615 (801)
Q Consensus 538 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~ 615 (801)
..+.....+....++|-.+....+..+|..++.+|.-+|--.|.+++|.+.|+.... +| |...|+-|...++...+.+
T Consensus 402 ~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~ 481 (579)
T KOG1125|consen 402 KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSE 481 (579)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccH
Confidence 122223334455566666666667678889999999999999999999999998754 55 5688999999999999999
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 616 SAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 616 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
+|..+|.+++++.|.-..+..-|+-.|...|.++||.+.|=....
T Consensus 482 EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 482 EAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999888888999999999999999998866544
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=0.00036 Score=73.30 Aligned_cols=101 Identities=19% Similarity=0.149 Sum_probs=73.6
Q ss_pred HHHHcCCChHHHHHHHhhC---CCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHhcCCChh
Q 003710 76 QELVSSGSMESACYLFEKM---SYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKAD-YFTYPFVIKACAGLLYLS 151 (801)
Q Consensus 76 ~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~ 151 (801)
++.+..|+++.|...|-+. ..+|-+-|..-..+|+..|++++|++=-.+-++. .|+ .-.|+-.-.++...|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 3456778999999888764 3457778888888899999998888766665543 444 346778888888888888
Q ss_pred HHHHHHHHHHHhCCCCchhhHhHHHHHH
Q 003710 152 EGEKVHGSLFKSGLNSDVYVCNSLIVMY 179 (801)
Q Consensus 152 ~a~~~~~~~~~~g~~~~~~~~~~li~~y 179 (801)
+|...|..-++.. ..+...++-|..++
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 8888887776654 34556667777766
No 104
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.29 E-value=5e-05 Score=77.40 Aligned_cols=251 Identities=10% Similarity=0.092 Sum_probs=157.7
Q ss_pred HhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003710 347 CTKLGALLEGKSIHGYAIRKGFLP--NVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAME 424 (801)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (801)
.--.|++..+..-.+ .. ...+ +.....-+.++|...|+.+.+..-...-..+.......+...+...++-+.++.
T Consensus 11 ~fy~G~Y~~~i~e~~-~~--~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LK--SFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HHCTT-HHHHCHHHH-CH--TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HHHhhhHHHHHHHhh-cc--CCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHH
Confidence 334577777665444 21 2233 344455667888889998877665555555555555444443433356667777
Q ss_pred HHHHHhCCCCCCCHhhHHHH-HHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHH
Q 003710 425 LFQDLWSEPLKPDAMTFASI-LPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIM 503 (801)
Q Consensus 425 l~~~m~~~g~~pd~~t~~~l-l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~ 503 (801)
-+++.......++..++..+ -..+...|+++.|.+++... .+.. ..-..+.
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE----------------------~~al~Vq 139 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLE----------------------LLALAVQ 139 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHH----------------------HHHHHHH
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------Cccc----------------------HHHHHHH
Confidence 77776655544333333322 23455678888887766431 1222 2234556
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 003710 504 AYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSI----SGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRI 579 (801)
Q Consensus 504 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 579 (801)
.|.+.++++.|.+.++.|.+ +..| .+...|..++.. .+.+.+|..+|+++.+. ..+++...+.+..+....
T Consensus 140 i~L~~~R~dlA~k~l~~~~~--~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~ 214 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQ--IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQL 214 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHC--CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHh
Confidence 66777777788999999987 3444 444445554433 34799999999999764 457788999999999999
Q ss_pred CCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCH-HHHHHHHHHHHccCCCCch
Q 003710 580 GNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDI-VSAEFAARHVLSSAQDNTG 633 (801)
Q Consensus 580 g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~~ 633 (801)
|+++||.+++++... .| ++.++..++......|+. +.+.+...++...+|+++.
T Consensus 215 ~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 999999999988654 23 455666777777777877 7788899998888998653
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.27 E-value=0.0013 Score=70.54 Aligned_cols=93 Identities=12% Similarity=0.059 Sum_probs=56.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCC-CCCH--hhHHHHHHH
Q 003710 374 LETALIDMYAGSGALKMTEKLFGSMIE---KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPL-KPDA--MTFASILPA 447 (801)
Q Consensus 374 ~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~--~t~~~ll~a 447 (801)
....+...+...|++++|...+++..+ .+...+..+...|...|++++|..++++...... .|+. ..|..+...
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 334455566677777777777776532 2445566666777777777777777777655321 1222 123345556
Q ss_pred HHhhcChhhHHHHHHHHHH
Q 003710 448 YAEIATLSDSMQIHSLITK 466 (801)
Q Consensus 448 ~~~~~~~~~a~~i~~~~~~ 466 (801)
+...|+.++|..+++.+..
T Consensus 196 ~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 196 YLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHCCCHHHHHHHHHHHhc
Confidence 6677777777777777653
No 106
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.26 E-value=0.0021 Score=68.88 Aligned_cols=163 Identities=8% Similarity=-0.039 Sum_probs=85.9
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH---
Q 003710 301 IVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIIN-LLPSCTKLGALLEGKSIHGYAIRKGFLPNVALET--- 376 (801)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~-ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~--- 376 (801)
...|..+...+...|+.+++...+.+..+.....++...... ....+...|+.+.+..+++.+.+.. +.+...+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 345666666777778888877777666543122223222211 1223445677888888777776653 22333333
Q ss_pred HHHHHHHccCChHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCC-HhhHHHHHHHHHhhc
Q 003710 377 ALIDMYAGSGALKMTEKLFGSMIEK---NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPD-AMTFASILPAYAEIA 452 (801)
Q Consensus 377 ~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~ 452 (801)
.+.......+..+.+.+.++..... ....+..+...+...|++++|...+++..+. .|+ ...+..+-..+...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcC
Confidence 1222222344555555555442222 1223334445666677777777777777653 333 333444455556666
Q ss_pred ChhhHHHHHHHHHH
Q 003710 453 TLSDSMQIHSLITK 466 (801)
Q Consensus 453 ~~~~a~~i~~~~~~ 466 (801)
++++|...+....+
T Consensus 163 ~~~eA~~~l~~~l~ 176 (355)
T cd05804 163 RFKEGIAFMESWRD 176 (355)
T ss_pred CHHHHHHHHHhhhh
Confidence 66666666665554
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.26 E-value=4.6e-05 Score=73.19 Aligned_cols=147 Identities=9% Similarity=0.059 Sum_probs=111.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcC
Q 003710 502 IMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIG 580 (801)
Q Consensus 502 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 580 (801)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ ..|+ ...|..|...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence 4567777777775444332211 11 012235666777777776654 3455 889999999999999
Q ss_pred CHHHHHHHHHhCCC-CC-CcchHHHHHHHH-HhcCC--HHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003710 581 NLDQAKRFIEEMPS-AP-TARIWGALLTAS-RKNND--IVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIK 655 (801)
Q Consensus 581 ~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 655 (801)
++++|.+.+++... .| +...+..+..++ ...|+ .++|..+++++++.+|++..++..|+..+.+.|++++|...+
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998754 34 566777777764 56676 599999999999999999999999999999999999999999
Q ss_pred HHHHHCCC
Q 003710 656 AIMEKEGL 663 (801)
Q Consensus 656 ~~m~~~g~ 663 (801)
+++.+...
T Consensus 168 ~~aL~l~~ 175 (198)
T PRK10370 168 QKVLDLNS 175 (198)
T ss_pred HHHHhhCC
Confidence 99987543
No 108
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=3.4e-06 Score=55.37 Aligned_cols=35 Identities=34% Similarity=0.598 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003710 496 VSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNE 530 (801)
Q Consensus 496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 530 (801)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
No 109
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.00087 Score=64.89 Aligned_cols=203 Identities=12% Similarity=0.083 Sum_probs=120.1
Q ss_pred cCChHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHH
Q 003710 385 SGALKMTEKLFGSMIE-KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSL 463 (801)
Q Consensus 385 ~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~ 463 (801)
.+++..++.+.++.+. .+..+-+......-+.|++++|++-|+...+-+---....|+..+. ..+.++.+.|.....+
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISE 203 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHH
Confidence 4566666777777663 4444444444445567888888888877765433333455655543 3455777778888777
Q ss_pred HHHhCCCCchHHHH----HHHHHHHhcCCccc-cc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHH
Q 003710 464 ITKLGLVSNIYISN----SIVYMYAKCGDLQT-AR--DVVSWNVIIMAYAIHGLGKISIQLFSEMREK-GIKPNESTFVS 535 (801)
Q Consensus 464 ~~~~g~~~~~~~~~----~li~~y~~~g~~~~-A~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ 535 (801)
+++.|+...+...- -.++.-. .|+... +. -+..+|.-...+.+.|+++.|.+-+..|--+ .-..|++|...
T Consensus 204 IieRG~r~HPElgIGm~tegiDvrs-vgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN 282 (459)
T KOG4340|consen 204 IIERGIRQHPELGIGMTTEGIDVRS-VGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHN 282 (459)
T ss_pred HHHhhhhcCCccCccceeccCchhc-ccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhH
Confidence 77776653322110 0000000 000000 00 1223444455567889999998888877422 23457788665
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 003710 536 LLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMP 593 (801)
Q Consensus 536 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~ 593 (801)
+.-. ...|++.++.+-+.-+. ++.|- .+++..++-.|++..-++-|.+++-+-+
T Consensus 283 ~Al~-n~~~~p~~g~~KLqFLL---~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 283 QALM-NMDARPTEGFEKLQFLL---QQNPFPPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHh-cccCCccccHHHHHHHH---hcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 4322 22355666666655554 55665 7899999999999999999999987754
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.13 E-value=2.5e-05 Score=70.84 Aligned_cols=99 Identities=11% Similarity=-0.152 Sum_probs=88.0
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHH
Q 003710 562 IVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLS 639 (801)
Q Consensus 562 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 639 (801)
+.|+ .+..+...+...|++++|.+.++.... ..+...|..+..++...|+++.|...++++++++|+++..+..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4455 456688899999999999999998754 346788999999999999999999999999999999999999999
Q ss_pred HHHHHcCCchHHHHHHHHHHHCC
Q 003710 640 NMYAEAGRWEDVEQIKAIMEKEG 662 (801)
Q Consensus 640 ~~y~~~g~~~~a~~~~~~m~~~g 662 (801)
.+|...|++++|...++...+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999987644
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.13 E-value=0.00016 Score=83.39 Aligned_cols=206 Identities=14% Similarity=0.159 Sum_probs=167.2
Q ss_pred CCC-HhhHHHHHHHHHhhcChhhHHHHHHHHHHh-CCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHH
Q 003710 435 KPD-AMTFASILPAYAEIATLSDSMQIHSLITKL-GLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGK 512 (801)
Q Consensus 435 ~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~ 512 (801)
.|| ...|...+.-..+.++.+.|+++.+++.+. ++. ++.+-...|.++++--...|.-+
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~R-------------------EeeEKLNiWiA~lNlEn~yG~ee 1514 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFR-------------------EEEEKLNIWIAYLNLENAYGTEE 1514 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcc-------------------hhHHHHHHHHHHHhHHHhhCcHH
Confidence 354 445666677777888899999998887743 221 23334567888888888889888
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003710 513 ISIQLFSEMREKGIKPNE-STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEE 591 (801)
Q Consensus 513 ~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 591 (801)
...++|++..+. -|+ ..|..|+.-|.+.+..++|-++++.|.++++ -....|..+++.+.+..+-+.|.+++++
T Consensus 1515 sl~kVFeRAcqy---cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1515 SLKKVFERACQY---CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKR 1589 (1710)
T ss_pred HHHHHHHHHHHh---cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 899999999883 244 4588999999999999999999999999877 4578999999999999999999999887
Q ss_pred CCC-CCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCc
Q 003710 592 MPS-APT---ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLK 664 (801)
Q Consensus 592 m~~-~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 664 (801)
... -|. .....-.+..-.++||.+.|+.+++.++.-.|.-...|..++++=.+.|..+.++.+|++..+.++.
T Consensus 1590 AL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1590 ALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 543 233 3344445555678999999999999999999999999999999999999999999999999987763
No 112
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=3.8e-06 Score=55.17 Aligned_cols=35 Identities=37% Similarity=0.673 Sum_probs=32.5
Q ss_pred ccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCCh
Q 003710 201 VSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDR 235 (801)
Q Consensus 201 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 235 (801)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 113
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.11 E-value=0.031 Score=62.72 Aligned_cols=70 Identities=13% Similarity=0.044 Sum_probs=31.5
Q ss_pred cCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCC
Q 003710 212 SVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCG 284 (801)
Q Consensus 212 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g 284 (801)
+.|+.++|..+++.....+.. |..|...+-..+...++.+++..+++...+. .|+......+..+|.|.+
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREK 124 (932)
T ss_pred HhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHH
Confidence 445555555555444333322 4444444444444555555555555544433 233333334444444444
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.11 E-value=0.00021 Score=81.33 Aligned_cols=138 Identities=11% Similarity=0.083 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 003710 494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGC 571 (801)
Q Consensus 494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 571 (801)
++..+-.|.....+.|+.++|.++++...+ +.||.. .+..+...+.+.+.+++|....++.. ...|+ ..+...
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 455667777777888888888888888887 677765 46667778888888888888888776 34666 777778
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHH
Q 003710 572 IIDLLGRIGNLDQAKRFIEEMPS-APT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYV 636 (801)
Q Consensus 572 li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 636 (801)
+..++.+.|++++|.++|++... .|+ ...|.++..++...|+.+.|...++++++...+-...|.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 88888888888888888888763 333 567777888888888888888888888877665555443
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.11 E-value=0.00019 Score=77.85 Aligned_cols=221 Identities=16% Similarity=0.165 Sum_probs=167.7
Q ss_pred CCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHH
Q 003710 367 GFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILP 446 (801)
Q Consensus 367 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 446 (801)
+++|--..-..+...+.++|-...|..+|++. ..|...|.+|+..|+..+|.++..+-.+ -+||..-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555566678889999999999999999875 5688899999999999999999998887 4788888888888
Q ss_pred HHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003710 447 AYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGI 526 (801)
Q Consensus 447 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 526 (801)
...+..-+++|.++.++..... . ..|+ .-...+++++++.+.|+.-.+ +
T Consensus 466 v~~d~s~yEkawElsn~~sarA------------~--------------r~~~---~~~~~~~~fs~~~~hle~sl~--~ 514 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARA------------Q--------------RSLA---LLILSNKDFSEADKHLERSLE--I 514 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHH------------H--------------Hhhc---cccccchhHHHHHHHHHHHhh--c
Confidence 8777777888888877654220 0 0000 011225677777888887665 3
Q ss_pred CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHH
Q 003710 527 KP-NESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWG 602 (801)
Q Consensus 527 ~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~ 602 (801)
.| -..||..+..+..+.++++.|.+.|.... ...|+ .+.|+.+..+|.+.|+..+|...+++... ..+..+|.
T Consensus 515 nplq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWE 591 (777)
T KOG1128|consen 515 NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWE 591 (777)
T ss_pred CccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeee
Confidence 33 34578777778888888999988888876 46777 78888898899999988888888887653 24566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccC
Q 003710 603 ALLTASRKNNDIVSAEFAARHVLSSA 628 (801)
Q Consensus 603 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 628 (801)
...-.....|.++.|.+++.+++.+.
T Consensus 592 Nymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 592 NYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred chhhhhhhcccHHHHHHHHHHHHHhh
Confidence 77777788888888888888887653
No 116
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.10 E-value=0.0024 Score=77.88 Aligned_cols=259 Identities=14% Similarity=0.008 Sum_probs=144.9
Q ss_pred HHcCCChhhHHHHHHHHHhCCCCCCh----hhHHHHHHHHhccCChHHHHHHHHHHHHh----CCC-CchHHHHHHHHHH
Q 003710 210 YCSVGDGVSSLVFFKEMQNCGLRYDR----FSLISALGAISIEGCLKIGKEIHCQVIKS----GLE-MDVMVQTSLVDMY 280 (801)
Q Consensus 210 ~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~l~~~~~~~----g~~-~~~~~~~~li~~y 280 (801)
+...|++++|...+++..+.-...+. .....+-..+...|+++.|...+...... |-. ....+...+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 44566666666666665442111111 12233334445566777776666665532 111 1123344455566
Q ss_pred hcCCChHHHHHHHhhcCC-------CC----cccHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCCCC--hhhHHHHHHH
Q 003710 281 GKCGVVDYAERLFNMIFP-------RN----IVAWNAMVGGYVVNAHFLESFSCLRKMLEDD-NLNPD--CITIINLLPS 346 (801)
Q Consensus 281 ~~~g~~~~A~~lf~~m~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-g~~pd--~~t~~~ll~~ 346 (801)
...|+++.|...+++... ++ ...+..+...+...|++++|...+.+..... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 667777777776655411 11 1123334445556677777777776654320 11122 2233344455
Q ss_pred HhccCChHHHHHHHHHHHHhCC--CCch---h-HHHHHHHHHHccCChHHHHHHHhcCCCCCH-------HHHHHHHHHH
Q 003710 347 CTKLGALLEGKSIHGYAIRKGF--LPNV---A-LETALIDMYAGSGALKMTEKLFGSMIEKNL-------VSWNAMIAAY 413 (801)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~g~--~~~~---~-~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~ 413 (801)
....|+.+.|.+.+.......- .... . .....+..+...|+.+.|...+.....+.. ..+..+...+
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 6677888888777777654211 1111 0 011123445668899999888876643311 1134566678
Q ss_pred HHcCCHHHHHHHHHHHhCC----CCCCCH-hhHHHHHHHHHhhcChhhHHHHHHHHHHhC
Q 003710 414 VRNGQNREAMELFQDLWSE----PLKPDA-MTFASILPAYAEIATLSDSMQIHSLITKLG 468 (801)
Q Consensus 414 ~~~g~~~~A~~l~~~m~~~----g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 468 (801)
...|++++|..++++.... |..++. .+...+-.++...|+.++|...+....+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8889999999999887543 333322 345555667788999999999999988765
No 117
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.0013 Score=63.82 Aligned_cols=308 Identities=9% Similarity=0.017 Sum_probs=198.7
Q ss_pred HHHHHHHcCCChHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHH-HHHHhcCC
Q 003710 73 RALQELVSSGSMESACYLFEKMSYL---DTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFV-IKACAGLL 148 (801)
Q Consensus 73 ~l~~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~ 148 (801)
+.+..+.+..++.+|.+++..-.++ +....+.+.-+|....++..|-+.|+++-.. .|...-|..- .+.+-+.+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhc
Confidence 4555556778899999988765443 5556778888888999999999999998764 4555444322 24455667
Q ss_pred ChhHHHHHHHHHHHhCCCCchhhHhHHHH--H--HHhcCCchHHHHhhccCC-CCCcccHHHHHHHHHcCCChhhHHHHH
Q 003710 149 YLSEGEKVHGSLFKSGLNSDVYVCNSLIV--M--YMKLGCVECAERMFDEMP-VRDTVSWNSMIGGYCSVGDGVSSLVFF 223 (801)
Q Consensus 149 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~--y~~~g~~~~A~~~f~~m~-~~d~~~~~~li~~~~~~g~~~~A~~l~ 223 (801)
.+..|.++...|... ....+..+. + ....+++..++.+.++.+ +.+..+.+-.-....+.|++++|++-|
T Consensus 93 i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred ccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 788888888777532 222222222 2 235688999999999988 456666666666677999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCC----
Q 003710 224 KEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPR---- 299 (801)
Q Consensus 224 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~---- 299 (801)
+...+-|---....|+..+. ..+.++...|.....++++.|+...+...- |..-+... .+.+..+
T Consensus 168 qaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgI---------Gm~tegiD-vrsvgNt~~lh 236 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGI---------GMTTEGID-VRSVGNTLVLH 236 (459)
T ss_pred HHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCc---------cceeccCc-hhcccchHHHH
Confidence 98876543333456776664 446788999999999999988643221100 00000000 0000000
Q ss_pred ---CcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 003710 300 ---NIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALET 376 (801)
Q Consensus 300 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 376 (801)
=+..+|.-...+.+.|+++.|.+-+.+|..+..-..|++|+..+.-. -..+++..+.+-+..+.... +....++.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFA 314 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFA 314 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHH
Confidence 01233444455667788888888888886554556788887655322 12345566666666666653 34566777
Q ss_pred HHHHHHHccCChHHHHHHHhcCCC
Q 003710 377 ALIDMYAGSGALKMTEKLFGSMIE 400 (801)
Q Consensus 377 ~Li~~y~k~g~~~~A~~~f~~~~~ 400 (801)
.++-.|||..-++-|-.++.+-..
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcc
Confidence 788889999888888888866544
No 118
>PLN02789 farnesyltranstransferase
Probab=98.05 E-value=0.0016 Score=67.27 Aligned_cols=221 Identities=12% Similarity=0.113 Sum_probs=138.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhh-HHHHHHHHHhhc-ChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 003710 409 MIAAYVRNGQNREAMELFQDLWSEPLKPDAMT-FASILPAYAEIA-TLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKC 486 (801)
Q Consensus 409 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 486 (801)
+-..+...++.++|+.+..++++ +.|+..| |..--..+...+ .+++++..++.+++..- .+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-kny------------- 106 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNY------------- 106 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cch-------------
Confidence 33445556677777777777765 3455443 222222333344 45677777777665542 222
Q ss_pred CCccccchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 003710 487 GDLQTARDVVSWNVIIMAYAIHGL--GKISIQLFSEMREKGIKP-NESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIV 563 (801)
Q Consensus 487 g~~~~A~d~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 563 (801)
.+|+.....+.+.|+ .++++.+++++++. .| |..+|.....++.+.|+++++++.++.+.+. .
T Consensus 107 ---------qaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d 172 (320)
T PLN02789 107 ---------QIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---D 172 (320)
T ss_pred ---------HHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---C
Confidence 223333223333333 24567888888773 44 4557777777778888888888888888754 2
Q ss_pred CC-hHHHHHHHHHHHhc---CC----HHHHHHHHHhCC-CC-CCcchHHHHHHHHHhc----CCHHHHHHHHHHHHccCC
Q 003710 564 PG-IEHYGCIIDLLGRI---GN----LDQAKRFIEEMP-SA-PTARIWGALLTASRKN----NDIVSAEFAARHVLSSAQ 629 (801)
Q Consensus 564 p~-~~~~~~li~~~~~~---g~----~~eA~~~~~~m~-~~-p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p 629 (801)
|+ ...|+....++.+. |. .+++.++..++. .. -|...|+-+...+... ++...+...+.++++.+|
T Consensus 173 ~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 173 VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 33 55565555555443 22 246677764443 33 4578899888888774 344668888899889999
Q ss_pred CCchhHHHHHHHHHHcC------------------CchHHHHHHHHHH
Q 003710 630 DNTGCYVLLSNMYAEAG------------------RWEDVEQIKAIME 659 (801)
Q Consensus 630 ~~~~~~~~l~~~y~~~g------------------~~~~a~~~~~~m~ 659 (801)
.++..+..|+++|+... ..++|.++.+.+.
T Consensus 253 ~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 253 NHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred CcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 99999999999998743 2366777777774
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.05 E-value=0.00012 Score=65.31 Aligned_cols=95 Identities=11% Similarity=0.004 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 003710 566 IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYA 643 (801)
Q Consensus 566 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 643 (801)
.+..-.+...+...|++++|..+|+-... .-+..-|-.|...|...|+++.|...+.++..++|+|+.++..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 44445566677788999999988886543 3456789999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHH
Q 003710 644 EAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 644 ~~g~~~~a~~~~~~m~~ 660 (801)
..|+.++|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999988765
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.03 E-value=0.001 Score=69.34 Aligned_cols=116 Identities=17% Similarity=0.133 Sum_probs=73.1
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-cchHHHHHHHHHhcCCHHH
Q 003710 540 CSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APT-ARIWGALLTASRKNNDIVS 616 (801)
Q Consensus 540 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~~~~~~g~~~~ 616 (801)
....|.+++|+..++.+... .|+ +......++.+.+.++.++|.+.++++.. .|+ ...|..+..++.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34456666666666666542 344 55555666666777777777776666654 354 4556666666666777777
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 003710 617 AEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIM 658 (801)
Q Consensus 617 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 658 (801)
|+.+++.....+|+|+..|..|+..|...|+..+|..-+.++
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 776666666667777777776666666666666665555444
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.98 E-value=0.00063 Score=70.88 Aligned_cols=138 Identities=15% Similarity=0.128 Sum_probs=114.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcC
Q 003710 503 MAYAIHGLGKISIQLFSEMREKGIKPNESTFVSL-LSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIG 580 (801)
Q Consensus 503 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 580 (801)
-.+...|..++|+..++.++. -.||..-|..+ ...+...++.++|.+.++.+.. ..|+ ....-.+.++|.+.|
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcC
Confidence 455677888999999999887 46777766554 4578899999999999999984 5677 666778899999999
Q ss_pred CHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 003710 581 NLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIM 658 (801)
Q Consensus 581 ~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 658 (801)
+..+|..+++.... +.|+..|..|..+|...|+..++..+ .+..|+-.|+|++|.......
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHH
Confidence 99999999998764 45788999999999999998877654 455788999999999999988
Q ss_pred HHCC
Q 003710 659 EKEG 662 (801)
Q Consensus 659 ~~~g 662 (801)
+++.
T Consensus 452 ~~~~ 455 (484)
T COG4783 452 SQQV 455 (484)
T ss_pred HHhc
Confidence 8764
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.00043 Score=66.36 Aligned_cols=136 Identities=16% Similarity=0.097 Sum_probs=111.2
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHH
Q 003710 526 IKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGA 603 (801)
Q Consensus 526 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ 603 (801)
..|+......+-.++...|+-+.+..+...... .-..+......++....+.|++.+|...+.+... .+|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 456544335666778888888888888776543 2223355666789999999999999999998754 578899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 003710 604 LLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGL 663 (801)
Q Consensus 604 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 663 (801)
+..+|-+.|+.+.|...+.+++++.|.++.++..|+-.|.-.|+.++|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999988776543
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.97 E-value=7.7e-05 Score=67.19 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=75.0
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHH
Q 003710 562 IVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLL 638 (801)
Q Consensus 562 ~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 638 (801)
..|+ ......+...+...|++++|.+.++.... .| +...|..+...+...|+.+.|...++++++.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3444 44555666677777777777777766533 23 456677777777788888888888888888888888888888
Q ss_pred HHHHHHcCCchHHHHHHHHHHHC
Q 003710 639 SNMYAEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 639 ~~~y~~~g~~~~a~~~~~~m~~~ 661 (801)
+.+|...|++++|...++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999888877664
No 124
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.96 E-value=0.00021 Score=75.33 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=103.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHH
Q 003710 532 TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASR 609 (801)
Q Consensus 532 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~ 609 (801)
...+|+..+...+++++|..+|+++.+. .|+ ....|+..+...++..+|.+++++... .| +...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3456777788889999999999999864 355 555688888889999999999988764 34 4455555556688
Q ss_pred hcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 003710 610 KNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIME 659 (801)
Q Consensus 610 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 659 (801)
..++.+.|..+++++.++.|.+..+|..|+.+|.+.|++++|.-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998875
No 125
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.95 E-value=0.04 Score=58.34 Aligned_cols=423 Identities=12% Similarity=0.117 Sum_probs=253.5
Q ss_pred CCCCChhHH-HHHHHHHcCCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHH
Q 003710 64 IGPRNITKT-RALQELVSSGSMESACYLFEKMSY--L-DTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPF 139 (801)
Q Consensus 64 ~~~~~~~~~-~l~~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 139 (801)
-.|.|+..| .||+-+... ..++++..++++.. | ....|..-|+.....++++....+|.+....- .+...|..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~l 91 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKL 91 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHH
Confidence 347788888 666666554 99999999999853 3 45679999999999999999999999987653 33444555
Q ss_pred HHHHHhcC-CCh----hHHHHHHHHHH-HhCCCCc-hhhHhHHHHH---------HHhcCCchHHHHhhccCCC-C----
Q 003710 140 VIKACAGL-LYL----SEGEKVHGSLF-KSGLNSD-VYVCNSLIVM---------YMKLGCVECAERMFDEMPV-R---- 198 (801)
Q Consensus 140 ll~~~~~~-~~~----~~a~~~~~~~~-~~g~~~~-~~~~~~li~~---------y~~~g~~~~A~~~f~~m~~-~---- 198 (801)
-|.-..+. +.. +...+.++..+ +.|.++- -..|+.-+.. |....+++..++++.++.. |
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 55433322 222 22334444443 4565443 2346666654 3444567778888888762 2
Q ss_pred -----CcccHHHHHHHH-------HcCCChhhHHHHHHHHHh--CCCCCChhh---------------HHHHHHHHhccC
Q 003710 199 -----DTVSWNSMIGGY-------CSVGDGVSSLVFFKEMQN--CGLRYDRFS---------------LISALGAISIEG 249 (801)
Q Consensus 199 -----d~~~~~~li~~~-------~~~g~~~~A~~l~~~m~~--~g~~p~~~t---------------~~~ll~a~~~~~ 249 (801)
|-..|..=|+-. -+...+-.|.++++++.. .|+.-+..+ |-..|.-=-..+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 112222111111 123345667777777643 354322222 222222111111
Q ss_pred ------Ch--HHHHHHHHHHH-HhCCCCchHHH-HHHH----HHHhcCCChHH-------HHHHHhhcCC----CCcccH
Q 003710 250 ------CL--KIGKEIHCQVI-KSGLEMDVMVQ-TSLV----DMYGKCGVVDY-------AERLFNMIFP----RNIVAW 304 (801)
Q Consensus 250 ------~~--~~a~~l~~~~~-~~g~~~~~~~~-~~li----~~y~~~g~~~~-------A~~lf~~m~~----~~~~~~ 304 (801)
.. ....-++++.+ -.++.|++... ...+ +.+...|+..+ +..++++... .+...|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01122233332 23555554321 1111 34444555443 4444443322 122223
Q ss_pred HHHHHHH---HhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHHHHH
Q 003710 305 NAMVGGY---VVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLP-NVALETALID 380 (801)
Q Consensus 305 ~~li~~~---~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~ 380 (801)
..+..-- .+..+.+.....+.+......+.|+ .+|...++...+..-+..|+.+|..+.+.+..+ ++.++++++.
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 2222111 1112355666677777655344554 467888888888999999999999999988877 8999999999
Q ss_pred HHHccCChHHHHHHHhcCCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCH--hhHHHHHHHHHhhcChh
Q 003710 381 MYAGSGALKMTEKLFGSMIE--KN-LVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDA--MTFASILPAYAEIATLS 455 (801)
Q Consensus 381 ~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~ 455 (801)
.|| .++.+-|.++|+.-.. .| ..--+..++-+...++-..|..+|++....++.||. ..|..+|.-=+..|++.
T Consensus 411 y~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 888 4677889999986533 23 344456778888889999999999999988777764 67899999889999999
Q ss_pred hHHHHHHHHHHh-C--CCCchHHHHHHHHHHHhcCCccc
Q 003710 456 DSMQIHSLITKL-G--LVSNIYISNSIVYMYAKCGDLQT 491 (801)
Q Consensus 456 ~a~~i~~~~~~~-g--~~~~~~~~~~li~~y~~~g~~~~ 491 (801)
.+.++-+.+... . ..+....-..+++.|.-.+....
T Consensus 490 si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred HHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence 988887766532 1 33333444556666665554443
No 126
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.2e-05 Score=52.41 Aligned_cols=34 Identities=24% Similarity=0.498 Sum_probs=30.2
Q ss_pred cccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCC
Q 003710 200 TVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRY 233 (801)
Q Consensus 200 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 233 (801)
+.+||.+|.+|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999988887
No 127
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.94 E-value=1.5e-05 Score=51.87 Aligned_cols=33 Identities=39% Similarity=0.685 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003710 496 VSWNVIIMAYAIHGLGKISIQLFSEMREKGIKP 528 (801)
Q Consensus 496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 528 (801)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 128
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.94 E-value=0.00026 Score=68.05 Aligned_cols=125 Identities=11% Similarity=0.061 Sum_probs=99.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH-HHhcCC--HH
Q 003710 508 HGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDL-LGRIGN--LD 583 (801)
Q Consensus 508 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~--~~ 583 (801)
.++.++++..+++..+.. ..|...|..+...+...|++++|...|+...+ +.|+ ...+..+..+ |.+.|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 455667788888877743 34556788888899999999999999998874 5675 8888888886 467787 59
Q ss_pred HHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHH
Q 003710 584 QAKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYV 636 (801)
Q Consensus 584 eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 636 (801)
+|.+++++... .| +...+..|...+...|++++|+..+++++++.|++..-+.
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~ 182 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQ 182 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence 99999998764 34 5677888888899999999999999999999998776543
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.91 E-value=0.0011 Score=75.74 Aligned_cols=130 Identities=12% Similarity=0.046 Sum_probs=91.1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCc-chHHH
Q 003710 527 KPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APTA-RIWGA 603 (801)
Q Consensus 527 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~-~~~~~ 603 (801)
..+...+..|.....+.|.+++|..+++... .+.|+ ......++..+.+.+++++|+..+++... .|+. .....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 3445666777777777777777777777766 45676 66666777777777777777777776654 4543 34444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 003710 604 LLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIME 659 (801)
Q Consensus 604 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 659 (801)
+..++...|++++|..+|++++..+|+++.+++.++..+...|+.++|...|+...
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55556677777777777777777777777777777777777777777777776663
No 130
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.90 E-value=0.00057 Score=74.32 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=60.5
Q ss_pred CCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHH
Q 003710 267 EMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPS 346 (801)
Q Consensus 267 ~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~ 346 (801)
+|-...-..+...+.++|-...|..+|++. ..|...|.+|...|+..+|..+.++-.++ +||..-|..+.+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDV 466 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhh
Confidence 344445556677888888888888888874 46777888888888888888877776653 5666666666665
Q ss_pred HhccCChHHHHHHHHH
Q 003710 347 CTKLGALLEGKSIHGY 362 (801)
Q Consensus 347 ~~~~g~~~~a~~~~~~ 362 (801)
..+..-+++|.++.++
T Consensus 467 ~~d~s~yEkawElsn~ 482 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNY 482 (777)
T ss_pred ccChHHHHHHHHHhhh
Confidence 5555555555555443
No 131
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.89 E-value=0.0019 Score=75.02 Aligned_cols=231 Identities=11% Similarity=0.115 Sum_probs=178.8
Q ss_pred CC-hhhHHHHHHHHhccCChHHHHHHHHHHHHh-CCCC---chHHHHHHHHHHhcCCChHHHHHHHhhcCCC-C-cccHH
Q 003710 233 YD-RFSLISALGAISIEGCLKIGKEIHCQVIKS-GLEM---DVMVQTSLVDMYGKCGVVDYAERLFNMIFPR-N-IVAWN 305 (801)
Q Consensus 233 p~-~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~-g~~~---~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~-~-~~~~~ 305 (801)
|| ...|..-+......++++.|+++.++.++. ++.- -..+|.+++++-...|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 54 345666677777888999999999888765 2221 2457888888888888889999999998763 2 35688
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHc
Q 003710 306 AMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFL-PNVALETALIDMYAG 384 (801)
Q Consensus 306 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~~y~k 384 (801)
.|...|.+.+++++|-++|+.|.+. +.-....|...+..+.+..+-+.|..++..+++.--. -...+..-.+.+-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK--F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK--FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH--hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 8999999999999999999999986 4455667888888888999989999999888875322 245566777888889
Q ss_pred cCChHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCH--hhHHHHHHHHHhhcChhhHHH
Q 003710 385 SGALKMTEKLFGSMIEK---NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDA--MTFASILPAYAEIATLSDSMQ 459 (801)
Q Consensus 385 ~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~ 459 (801)
+|+.+.++.+|+..... -...|+..|+.=.++|+.+.+..+|++....++.|-. +.|...|..=.+.|+-+.+..
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 99999999999988432 4568999999999999999999999999998888763 456666665555666555555
Q ss_pred HHHHHH
Q 003710 460 IHSLIT 465 (801)
Q Consensus 460 i~~~~~ 465 (801)
+-..+.
T Consensus 1693 VKarA~ 1698 (1710)
T KOG1070|consen 1693 VKARAK 1698 (1710)
T ss_pred HHHHHH
Confidence 544444
No 132
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.89 E-value=0.00081 Score=67.21 Aligned_cols=180 Identities=13% Similarity=0.069 Sum_probs=92.7
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHhcCCCC---CH---HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHh----h
Q 003710 371 NVALETALIDMYAGSGALKMTEKLFGSMIEK---NL---VSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAM----T 440 (801)
Q Consensus 371 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t 440 (801)
....+-.+...|.+.|++++|...|+++... +. ..|..+...|.+.|++++|+..|+++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 3444555666677777777777777765322 11 35566677777788888888888887653 33322 2
Q ss_pred HHHHHHHHHhh--------cChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHH
Q 003710 441 FASILPAYAEI--------ATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGK 512 (801)
Q Consensus 441 ~~~ll~a~~~~--------~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~ 512 (801)
+..+-.++.+. |+.+.|.+.++.+.+.. +.+.....++..... ..... ......+...|...|+++
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~~-~~~~~~~a~~~~~~g~~~ 183 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNRL-AGKELYVARFYLKRGAYV 183 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHHH-HHHHHHHHHHHHHcCChH
Confidence 22222333332 56777788877777653 112222222211100 00000 001113344455566666
Q ss_pred HHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 003710 513 ISIQLFSEMREKGI-KP-NESTFVSLLSSCSISGMVDEGWNYFDSMRK 558 (801)
Q Consensus 513 ~A~~l~~~m~~~g~-~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 558 (801)
+|+..|++..+..- .| ....+..+..++.+.|++++|..+++.+..
T Consensus 184 ~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 184 AAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666555310 11 123455555566666666666666655544
No 133
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.85 E-value=0.00084 Score=64.43 Aligned_cols=117 Identities=16% Similarity=0.119 Sum_probs=53.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCcchHHHHHHHHHhcCC
Q 003710 536 LLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-A-PTARIWGALLTASRKNND 613 (801)
Q Consensus 536 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~-p~~~~~~~ll~~~~~~g~ 613 (801)
++....+.|++.+|...|++... .-.+|.+.|+.+.-+|.+.|++++|..-|.+... . .++...+.|.-.+...||
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 44444444555555555444432 2222344455555555555555555444433321 1 223344444444445555
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003710 614 IVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQI 654 (801)
Q Consensus 614 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 654 (801)
.+.|+..+.......+.|..+-..|+-+-...|+.++|..+
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555444444444444444444445555555554443
No 134
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.0006 Score=72.26 Aligned_cols=240 Identities=15% Similarity=0.155 Sum_probs=143.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHH
Q 003710 349 KLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIE---KNLVSWNAMIAAYVRNGQNREAMEL 425 (801)
Q Consensus 349 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 425 (801)
+.|++.+|.-.|+..++.. +-+...|--|-......++-..|+..+++..+ .|....-+|...|...|.-.+|+.+
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4455666666666665553 33555666666666666666677777666543 3566677777888888988999999
Q ss_pred HHHHhCCCCC--------CCHhhHHHHHHHHHhhcChhhHHHHHHHHH-HhCCCCchHHHHHHHHHHHhcCCccccchHH
Q 003710 426 FQDLWSEPLK--------PDAMTFASILPAYAEIATLSDSMQIHSLIT-KLGLVSNIYISNSIVYMYAKCGDLQTARDVV 496 (801)
Q Consensus 426 ~~~m~~~g~~--------pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~ 496 (801)
|+.-+....+ ++..+-.. ..+.....+....++|-.+. ..+..+|..++.+|.-.
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL-------------- 439 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL-------------- 439 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH--------------
Confidence 8887543210 01000000 01111122233333333333 44433455555544444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 003710 497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIID 574 (801)
Q Consensus 497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 574 (801)
|-..|++++|+..|+..+. ++|+.. +|+-|...++...+.++|+..|++.. .+.|+ +...-.|.-
T Consensus 440 --------y~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL---qLqP~yVR~RyNlgI 506 (579)
T KOG1125|consen 440 --------YNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL---QLQPGYVRVRYNLGI 506 (579)
T ss_pred --------HhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH---hcCCCeeeeehhhhh
Confidence 3444555555888888777 567544 68888888888888888888888776 46777 666666777
Q ss_pred HHHhcCCHHHHHHHHHhCC---CC---------CCcchHHHHHHHHHhcCCHHHHH
Q 003710 575 LLGRIGNLDQAKRFIEEMP---SA---------PTARIWGALLTASRKNNDIVSAE 618 (801)
Q Consensus 575 ~~~~~g~~~eA~~~~~~m~---~~---------p~~~~~~~ll~~~~~~g~~~~a~ 618 (801)
.|...|.++||.+.|-... .+ ++..+|.+|-.++...++.+.+.
T Consensus 507 S~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 7788888888777654321 11 23357777776666666665443
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.80 E-value=0.073 Score=56.49 Aligned_cols=171 Identities=8% Similarity=0.099 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCccccchHHH
Q 003710 419 NREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVS-NIYISNSIVYMYAKCGDLQTARDVVS 497 (801)
Q Consensus 419 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~d~~~ 497 (801)
.+...+.++++...-..--..+|...++...+..-++.|+.+|..+.+.+..+ ++.++++++.-||.
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs------------ 414 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS------------ 414 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc------------
Confidence 55566666666554322234567788888888999999999999999888777 78888888887774
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHH
Q 003710 498 WNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTF-VSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG--IEHYGCIID 574 (801)
Q Consensus 498 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~ 574 (801)
++.+-|.++|+--+.. -+|...| ...+.-+.+.++-..++.+|+..... ++.|+ ...|..+++
T Consensus 415 -----------kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 415 -----------KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLE 480 (656)
T ss_pred -----------CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHH
Confidence 4455567888764442 3444433 35566677888888899999998876 77777 788999999
Q ss_pred HHHhcCCHHHHHHHHHhCCC------CCCcchHHHHHHHHHhcCCHH
Q 003710 575 LLGRIGNLDQAKRFIEEMPS------APTARIWGALLTASRKNNDIV 615 (801)
Q Consensus 575 ~~~~~g~~~eA~~~~~~m~~------~p~~~~~~~ll~~~~~~g~~~ 615 (801)
-=..-|+++.+.++-+++-. ++....-..++.-+...+...
T Consensus 481 yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 481 YESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 98999999988888766532 222233344555666555543
No 136
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=3.5e-05 Score=48.83 Aligned_cols=31 Identities=42% Similarity=0.846 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHcCCChhhHHHHHHHHHhCCC
Q 003710 201 VSWNSMIGGYCSVGDGVSSLVFFKEMQNCGL 231 (801)
Q Consensus 201 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 231 (801)
++||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988764
No 137
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.73 E-value=3.4e-05 Score=48.90 Aligned_cols=31 Identities=39% Similarity=0.702 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003710 496 VSWNVIIMAYAIHGLGKISIQLFSEMREKGI 526 (801)
Q Consensus 496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 526 (801)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988774
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.69 E-value=0.0059 Score=70.60 Aligned_cols=221 Identities=12% Similarity=0.103 Sum_probs=138.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHH-HHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHH
Q 003710 402 NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILP-AYAEIATLSDSMQIHSLITKLGLVSNIYISNSIV 480 (801)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 480 (801)
+...|..|+..|...+++++|.++.++..+ ..|+...+-.++. .+.+.+..+.+..+ .+... .+...-++..-
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~ve 103 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAIVE 103 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhHHH
Confidence 445666677777777777777777775544 3455443332222 34444555555444 22211 11111112222
Q ss_pred HHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 003710 481 YMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDY 560 (801)
Q Consensus 481 ~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 560 (801)
..|.+.|+.-+ +-.++-.+..+|-+.|+.++|...|+++++.. .-|....+.+...++.. ++++|++++......
T Consensus 104 ~~~~~i~~~~~--~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~- 178 (906)
T PRK14720 104 HICDKILLYGE--NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR- 178 (906)
T ss_pred HHHHHHHhhhh--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-
Confidence 22222222211 23456778888999999999999999999954 23455678888888888 999999998887653
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC----------------------CCCcchHHHHHHHHHhcCCHHHHH
Q 003710 561 GIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS----------------------APTARIWGALLTASRKNNDIVSAE 618 (801)
Q Consensus 561 ~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~----------------------~p~~~~~~~ll~~~~~~g~~~~a~ 618 (801)
|...+++.++.++++++.. ..-..+|.-|...|...++++.+.
T Consensus 179 ---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 179 ---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred ---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 3334455555554444432 122345555667788888999999
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHHHcCCchH
Q 003710 619 FAARHVLSSAQDNTGCYVLLSNMYAEAGRWED 650 (801)
Q Consensus 619 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 650 (801)
.+++.+++.+|.|..+..-++..|. +++.+
T Consensus 244 ~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 244 YILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 9999999999999888888888776 44444
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.69 E-value=0.0011 Score=60.30 Aligned_cols=114 Identities=15% Similarity=0.113 Sum_probs=57.6
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCc----chHHHHHHHHHhcCCHHH
Q 003710 543 SGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPSA-PTA----RIWGALLTASRKNNDIVS 616 (801)
Q Consensus 543 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p~~----~~~~~ll~~~~~~g~~~~ 616 (801)
.++...+...++.+.+.++-.|- ....-.+...+...|++++|.+.|+..... |+. ..+..|...+...|+++.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44445555555555443222111 122223344455555555555555544332 221 223334444555566666
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 003710 617 AEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAI 657 (801)
Q Consensus 617 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 657 (801)
|...++. ....+..+..+..++++|.+.|++++|...|+.
T Consensus 104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555544 122233445666788888888888888887764
No 140
>PLN02789 farnesyltranstransferase
Probab=97.65 E-value=0.0086 Score=62.00 Aligned_cols=198 Identities=9% Similarity=0.150 Sum_probs=136.7
Q ss_pred CCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHH
Q 003710 417 GQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVV 496 (801)
Q Consensus 417 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~ 496 (801)
+++.+|+.+|+.... ..+..++|..+...+++.. |+ +..
T Consensus 34 ~~~~~a~~~~ra~l~------------------~~e~serAL~lt~~aI~ln--P~---------------------~yt 72 (320)
T PLN02789 34 PEFREAMDYFRAVYA------------------SDERSPRALDLTADVIRLN--PG---------------------NYT 72 (320)
T ss_pred HHHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHC--ch---------------------hHH
Confidence 455666666665543 3456777888888777653 32 223
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCC--HHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 003710 497 SWNVIIMAYAIHG-LGKISIQLFSEMREKGIKPNE-STFVSLLSSCSISGM--VDEGWNYFDSMRKDYGIVPG-IEHYGC 571 (801)
Q Consensus 497 ~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~-~~~~~~ 571 (801)
+|+.....+...| +.++++..++++.+. .|+. .+|..-...+.+.|. .+++..+++.+.+ +.|. -..|+.
T Consensus 73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~---~dpkNy~AW~~ 147 (320)
T PLN02789 73 VWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS---LDAKNYHAWSH 147 (320)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH---hCcccHHHHHH
Confidence 4555544555556 568889999999985 3443 356544444555565 3677888887774 4565 788888
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhc---CCH----HHHHHHHHHHHccCCCCchhHHHHHHHH
Q 003710 572 IIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKN---NDI----VSAEFAARHVLSSAQDNTGCYVLLSNMY 642 (801)
Q Consensus 572 li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~---g~~----~~a~~~~~~~~~~~p~~~~~~~~l~~~y 642 (801)
...++.+.|++++|++.++++.. ..|...|+.....+... |.. +.......++++.+|+|.+++..+..+|
T Consensus 148 R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll 227 (320)
T PLN02789 148 RQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLF 227 (320)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 88999999999999999999864 35677888777666554 222 4566777899999999999999999999
Q ss_pred HHc----CCchHHHHHHHHHHH
Q 003710 643 AEA----GRWEDVEQIKAIMEK 660 (801)
Q Consensus 643 ~~~----g~~~~a~~~~~~m~~ 660 (801)
... ++..+|.+......+
T Consensus 228 ~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 228 KDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred hcCCcccccchhHHHHHHHhhc
Confidence 873 344567666655443
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.65 E-value=0.00088 Score=60.20 Aligned_cols=114 Identities=11% Similarity=0.038 Sum_probs=89.5
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 003710 516 QLFSEMREKGIKPNES-TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVP-GIEHYGCIIDLLGRIGNLDQAKRFIEEMP 593 (801)
Q Consensus 516 ~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~ 593 (801)
++|++... ..|+.. ....+...+...|++++|.+.|+.+... .| +...+..+...|.+.|++++|...++...
T Consensus 4 ~~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555 456543 4566677788899999999999988753 35 47888899999999999999999988764
Q ss_pred C--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchh
Q 003710 594 S--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGC 634 (801)
Q Consensus 594 ~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 634 (801)
. ..+...|..+...+...|+.+.|...++++++++|++...
T Consensus 79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 2 3456777778888999999999999999999999987653
No 142
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.61 E-value=0.094 Score=52.39 Aligned_cols=211 Identities=13% Similarity=0.107 Sum_probs=108.6
Q ss_pred HhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHH---HHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhcc
Q 003710 172 CNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMI---GGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIE 248 (801)
Q Consensus 172 ~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 248 (801)
.-.|-+.+...|++.+|+.-|....+-|...|-++- ..|...|+...|+.=|.+..+ ++||-..-. +-
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~AR-iQ------ 111 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAAR-IQ------ 111 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHH-HH------
Confidence 344555566667777777777766666666666654 356666666666666655544 334421100 00
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 003710 249 GCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKML 328 (801)
Q Consensus 249 ~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 328 (801)
--..+.|.|.++.|..=|+.+.+.+.. -+....++.+.- +..++.
T Consensus 112 ---------------------------Rg~vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~-------~~~e~~ 156 (504)
T KOG0624|consen 112 ---------------------------RGVVLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLA-------LIQEHW 156 (504)
T ss_pred ---------------------------hchhhhhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHH-------hHHHHH
Confidence 012344556666666655555332210 000011111100 111110
Q ss_pred hCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcC---CCCCHHH
Q 003710 329 EDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSM---IEKNLVS 405 (801)
Q Consensus 329 ~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~---~~~~~~~ 405 (801)
.....+..+...|+...+......+++.. +-|...+..-..+|...|++..|+.-++.. ...+...
T Consensus 157 ----------~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~ 225 (504)
T KOG0624|consen 157 ----------VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEG 225 (504)
T ss_pred ----------HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHH
Confidence 11222333344455555555555555432 345666666677777777777776655443 3345555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHh
Q 003710 406 WNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAM 439 (801)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 439 (801)
.--+-..+-..|+.+.++...++-++ +.||..
T Consensus 226 ~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 226 HYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 55556666777888888777777765 456643
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.0043 Score=59.13 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=38.2
Q ss_pred hcCCHHHHHHHHHhCCC-C-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003710 578 RIGNLDQAKRFIEEMPS-A-PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIK 655 (801)
Q Consensus 578 ~~g~~~eA~~~~~~m~~-~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 655 (801)
..|++++|+++++.... . -|.+++..=+......|..-+|++.....++..+.|...+.-|+++|...|++++|.-.+
T Consensus 98 a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 34445555555544432 1 223334444444444444444444444444455555555555555555555555554444
Q ss_pred HHHH
Q 003710 656 AIME 659 (801)
Q Consensus 656 ~~m~ 659 (801)
+++.
T Consensus 178 EE~l 181 (289)
T KOG3060|consen 178 EELL 181 (289)
T ss_pred HHHH
Confidence 4443
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.52 E-value=0.00065 Score=56.08 Aligned_cols=92 Identities=21% Similarity=0.209 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcC
Q 003710 569 YGCIIDLLGRIGNLDQAKRFIEEMPS-APT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAG 646 (801)
Q Consensus 569 ~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 646 (801)
+..+...+...|++++|.+++++... .|+ ...|..+...+...|+.+.|...++.+++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44566677777888888887776543 233 3566667777777888888888888888888888888888899999999
Q ss_pred CchHHHHHHHHHHH
Q 003710 647 RWEDVEQIKAIMEK 660 (801)
Q Consensus 647 ~~~~a~~~~~~m~~ 660 (801)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888877654
No 145
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.47 E-value=0.028 Score=65.15 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=43.1
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCC
Q 003710 237 SLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAH 316 (801)
Q Consensus 237 t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~ 316 (801)
.+..+..+|.+.|+.+++.++++++++.. +.|..+.|-+...|+.. ++++|.+++.+. +..|....+
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhc
Confidence 33344444444555555555555555544 33555566666666666 666666665542 333555556
Q ss_pred hhHHHHHHHHHHh
Q 003710 317 FLESFSCLRKMLE 329 (801)
Q Consensus 317 ~~~A~~l~~~m~~ 329 (801)
+.++.+++.++..
T Consensus 185 ~~~~~e~W~k~~~ 197 (906)
T PRK14720 185 YVGIEEIWSKLVH 197 (906)
T ss_pred chHHHHHHHHHHh
Confidence 6666666666654
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.47 E-value=0.0016 Score=68.70 Aligned_cols=120 Identities=12% Similarity=0.138 Sum_probs=71.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhc
Q 003710 103 NVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKL 182 (801)
Q Consensus 103 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 182 (801)
.+|++.+...++++.|+++|+++.+.. |+ ....+.+.+...++-.+|.++....++.. +.|..........+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555555666667777777666543 33 33345555555555566666666665443 23444555555556666
Q ss_pred CCchHHHHhhccCC--CC-CcccHHHHHHHHHcCCChhhHHHHHHHHH
Q 003710 183 GCVECAERMFDEMP--VR-DTVSWNSMIGGYCSVGDGVSSLVFFKEMQ 227 (801)
Q Consensus 183 g~~~~A~~~f~~m~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 227 (801)
++.+.|.++.++.. .| +..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777766654 33 34467777777777777777777766664
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.45 E-value=0.0057 Score=55.66 Aligned_cols=125 Identities=15% Similarity=0.071 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHH
Q 003710 497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNE----STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG--IEHYG 570 (801)
Q Consensus 497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~ 570 (801)
.|..++..+ ..++...+.+.++++.... |+. .....+...+...|++++|...|+..... ...|. ....-
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 455555555 4788888888999998853 443 23344556788899999999999999875 32333 23455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003710 571 CIIDLLGRIGNLDQAKRFIEEMPSA-PTARIWGALLTASRKNNDIVSAEFAARHVL 625 (801)
Q Consensus 571 ~li~~~~~~g~~~eA~~~~~~m~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 625 (801)
.|..++...|++++|+..++..+.. .....+..+...+...|+.+.|+..+++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 6788899999999999999886543 344566677778999999999999998763
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.44 E-value=0.002 Score=56.29 Aligned_cols=98 Identities=11% Similarity=0.016 Sum_probs=44.1
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----cchHHHHHHHHH
Q 003710 536 LLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APT----ARIWGALLTASR 609 (801)
Q Consensus 536 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~----~~~~~~ll~~~~ 609 (801)
+...+...|++++|.+.|+.+.+.+.-.|. ...+..+..++.+.|++++|.+.++.... .|+ ..++..+...+.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 333444444555555554444432111111 22333344445555555555554444322 122 233444444555
Q ss_pred hcCCHHHHHHHHHHHHccCCCCch
Q 003710 610 KNNDIVSAEFAARHVLSSAQDNTG 633 (801)
Q Consensus 610 ~~g~~~~a~~~~~~~~~~~p~~~~ 633 (801)
..|+.+.|...++++++..|++..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HhCChHHHHHHHHHHHHHCcCChh
Confidence 555555555556655555555543
No 149
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.42 E-value=0.036 Score=59.63 Aligned_cols=199 Identities=17% Similarity=0.183 Sum_probs=120.9
Q ss_pred HHHHhccCChHHHHHH--HHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003710 344 LPSCTKLGALLEGKSI--HGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNRE 421 (801)
Q Consensus 344 l~~~~~~g~~~~a~~~--~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 421 (801)
=.+|.+..++.--+-+ ++.+.++|-.|+... +.+.++-.|++.+|-++|. ++|....
T Consensus 605 RkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~G~enR 663 (1081)
T KOG1538|consen 605 RKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------RSGHENR 663 (1081)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------HcCchhh
Confidence 3444444443333222 344556666666543 3445566788888888874 5577777
Q ss_pred HHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHH
Q 003710 422 AMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVI 501 (801)
Q Consensus 422 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~l 501 (801)
|+++|.+|+-- -..+-+...|..++-..+.+.-.+.. -++.--.+-..|+...|+.++|.
T Consensus 664 AlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi-------- 723 (1081)
T KOG1538|consen 664 ALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAI-------- 723 (1081)
T ss_pred HHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhh--------
Confidence 88888777521 12233344455444444433322111 11111134567888889999884
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 003710 502 IMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGN 581 (801)
Q Consensus 502 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 581 (801)
.....+|-.+-++++-+++-. .+..+...+..-+.+...+..|-++|..|-. ...++++....++
T Consensus 724 -~i~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~ 788 (1081)
T KOG1538|consen 724 -EICGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQR 788 (1081)
T ss_pred -hhhhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeeccc
Confidence 344566767777776666533 3444555555556667778888999988743 2468899999999
Q ss_pred HHHHHHHHHhCCC-CCCc
Q 003710 582 LDQAKRFIEEMPS-APTA 598 (801)
Q Consensus 582 ~~eA~~~~~~m~~-~p~~ 598 (801)
|+||..+-++.|. .||.
T Consensus 789 W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 789 WDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred chHhHhhhhhCccccccc
Confidence 9999999999985 3443
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.036 Score=53.09 Aligned_cols=191 Identities=12% Similarity=0.095 Sum_probs=134.9
Q ss_pred CCHHHHHHHHHHHhC---CC-CCCCHhh-HHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccc
Q 003710 417 GQNREAMELFQDLWS---EP-LKPDAMT-FASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQT 491 (801)
Q Consensus 417 g~~~~A~~l~~~m~~---~g-~~pd~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 491 (801)
.++++.++++.+|.. .| ..++..+ |-.++-+....|..+.|...++.+...- +.+..+..--
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lk------------ 92 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLK------------ 92 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHH------------
Confidence 456777777777753 24 5566554 3455666677888888888888877543 2222221100
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 003710 492 ARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGC 571 (801)
Q Consensus 492 A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 571 (801)
+ .-+-..|++++|+++++..++.. +.|.+++.-=+...-..|+--+|++-+....+ .+..|.+.|.-
T Consensus 93 --------a--m~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~e 159 (289)
T KOG3060|consen 93 --------A--MLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHE 159 (289)
T ss_pred --------H--HHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHH
Confidence 0 11334678888899999999876 55666777666666778888899988888876 45667999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcC---CHHHHHHHHHHHHccCCCCch
Q 003710 572 IIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNN---DIVSAEFAARHVLSSAQDNTG 633 (801)
Q Consensus 572 li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~ 633 (801)
+.++|...|++++|.-.++++.. .| ++..+..|...+...| |.+.+...+++.+++.|.+..
T Consensus 160 LaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 160 LAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHH
Confidence 99999999999999999998754 45 4455556666554444 678899999999999996543
No 151
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.38 E-value=0.18 Score=52.19 Aligned_cols=103 Identities=21% Similarity=0.229 Sum_probs=83.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcC
Q 003710 374 LETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIAT 453 (801)
Q Consensus 374 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 453 (801)
+.+..|.-+...|....|.++..+..-+|-..|-..|.+|+..++|++-..+... +-..+-|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444566667789999999999999999999999999999999999987776442 1234889999999999999
Q ss_pred hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCcccc
Q 003710 454 LSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTA 492 (801)
Q Consensus 454 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 492 (801)
..+|..+...+ .+..-+.+|.+||++.+|
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A 281 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEA 281 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHH
Confidence 98888776651 225678899999998888
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.36 E-value=0.0022 Score=55.97 Aligned_cols=97 Identities=16% Similarity=0.043 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---chhHHHH
Q 003710 567 EHYGCIIDLLGRIGNLDQAKRFIEEMPS-APT----ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDN---TGCYVLL 638 (801)
Q Consensus 567 ~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 638 (801)
..+-.++..+.+.|++++|.+.++.+.. .|+ ...+..+...+...|+++.|...++.++...|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4566778889999999999999998854 343 2456668888999999999999999999988875 5678899
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCC
Q 003710 639 SNMYAEAGRWEDVEQIKAIMEKEGL 663 (801)
Q Consensus 639 ~~~y~~~g~~~~a~~~~~~m~~~g~ 663 (801)
+.+|.+.|++++|.+.++.+.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 9999999999999999999987643
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.35 E-value=0.00048 Score=53.44 Aligned_cols=64 Identities=19% Similarity=0.147 Sum_probs=58.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcC-CchHHHHHHHHHHH
Q 003710 597 TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAG-RWEDVEQIKAIMEK 660 (801)
Q Consensus 597 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 660 (801)
++.+|..+...+...|+++.|+..++++++++|+++.+|..++.+|...| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45678888899999999999999999999999999999999999999999 79999999987765
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.34 E-value=0.00065 Score=51.93 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=51.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710 604 LLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG 662 (801)
Q Consensus 604 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 662 (801)
+...+...|+++.|+..++++++.+|++...+..++.++...|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44567788999999999999999999999999999999999999999999999887643
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.33 E-value=0.0045 Score=58.26 Aligned_cols=129 Identities=15% Similarity=0.134 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 003710 495 VVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN--ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGC 571 (801)
Q Consensus 495 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 571 (801)
...+..+...|...|++++|+..|++..+....++ ...+..+...+.+.|++++|...++...+ +.|+ ...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHH
Confidence 34566777778888889999999999887443332 35677788888899999999999988774 3454 666777
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCC
Q 003710 572 IIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGR 647 (801)
Q Consensus 572 li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 647 (801)
+..+|...|+...|..-++... ..++.|...++++++.+|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 7788888777666554333211 12567888889999999886 4445555554443
No 156
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.051 Score=52.49 Aligned_cols=148 Identities=10% Similarity=0.014 Sum_probs=99.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH----H
Q 003710 502 IMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLL----G 577 (801)
Q Consensus 502 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~----~ 577 (801)
...|...|++++|++..+... ..+.. ..=...+.+..+.+-|.+.++.|.+- -+..+.+.|..++ .
T Consensus 115 a~i~~~~~~~deAl~~~~~~~----~lE~~--Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE----NLEAA--ALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc----hHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhc
Confidence 345777888888888877621 11222 12223345667788888888888742 2344455444444 4
Q ss_pred hcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHH-HH
Q 003710 578 RIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVE-QI 654 (801)
Q Consensus 578 ~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~-~~ 654 (801)
..+.+.+|.-+|++|.. .|++.+.+-...+|...|++++|+.+++.++..++.++.+...++-.--..|+-.++. +.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 45678888888888876 3777777777777888889999999988888888888888887777777777776554 34
Q ss_pred HHHHH
Q 003710 655 KAIME 659 (801)
Q Consensus 655 ~~~m~ 659 (801)
...++
T Consensus 265 l~QLk 269 (299)
T KOG3081|consen 265 LSQLK 269 (299)
T ss_pred HHHHH
Confidence 44443
No 157
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.28 E-value=0.012 Score=55.12 Aligned_cols=110 Identities=13% Similarity=0.064 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 003710 495 VVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN--ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGC 571 (801)
Q Consensus 495 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 571 (801)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|++++|+..++...+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 45677778888888999999999998877432222 24677888888889999999999888764 3454 556666
Q ss_pred HHHHHH-------hcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 003710 572 IIDLLG-------RIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNT 632 (801)
Q Consensus 572 li~~~~-------~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 632 (801)
+..+|. +.|++++|...+ +.|...++++++.+|++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~-------------------------~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWF-------------------------DQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHH-------------------------HHHHHHHHHHHHhCcccH
Confidence 666666 444555444443 346677778888888643
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.26 E-value=0.00021 Score=58.01 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=37.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 003710 599 RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAI 657 (801)
Q Consensus 599 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 657 (801)
..|-.+..++...|+++.|..++++ .+.+|.+......++..|.+.|++++|.+++++
T Consensus 26 ~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 26 AYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3444455555555555555555555 455565656666778888888888888888764
No 159
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.044 Score=52.92 Aligned_cols=242 Identities=11% Similarity=0.066 Sum_probs=125.3
Q ss_pred HHccCChHHHHHHHhcC-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhh-HH
Q 003710 382 YAGSGALKMTEKLFGSM-IE-KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSD-SM 458 (801)
Q Consensus 382 y~k~g~~~~A~~~f~~~-~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~-a~ 458 (801)
|.-.|.+..+...-... .. .++..-.-|-.+|...|.+...+. +... |-.|....+..+-......++.+. -.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchhHHHHH
Confidence 33446666555443322 12 233333344556666665443222 1111 113333333333222333333322 22
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003710 459 QIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARD-------VVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES 531 (801)
Q Consensus 459 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 531 (801)
++.+.+.......+......-...|...|+.++|.+ ..+.-.=+..+.+..+.+-|.+.+++|.+- -+..
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 334444444444443333444455677777777761 111111223345566677777777777662 2455
Q ss_pred HHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCcchHHHHH
Q 003710 532 TFVSLLSSCSI----SGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSA--PTARIWGALL 605 (801)
Q Consensus 532 t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~--p~~~~~~~ll 605 (801)
|.+-|..++.+ .+.+.+|.-+|++|.+ ...|+..+.+-+..+....|+++||..+++....+ .++.+...++
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 66655555543 4457777777777765 34566777777777777777888887777776542 3444444444
Q ss_pred HHHHhcC-CHHHHHHHHHHHHccCCCCc
Q 003710 606 TASRKNN-DIVSAEFAARHVLSSAQDNT 632 (801)
Q Consensus 606 ~~~~~~g-~~~~a~~~~~~~~~~~p~~~ 632 (801)
-.-...| +.+.-.+...++....|..+
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 4444444 33445566666666666643
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.22 E-value=0.16 Score=52.14 Aligned_cols=155 Identities=12% Similarity=0.178 Sum_probs=90.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhh-cChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 003710 407 NAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEI-ATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAK 485 (801)
Q Consensus 407 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~-~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 485 (801)
...+..|...|++..|-.++.++- ..|... |+++.|.+.|....+ .|..
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~---------------~y~~ 147 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAE---------------LYEQ 147 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHH---------------HHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHH---------------HHHH
Confidence 344666777777777766666653 234444 677777777766653 2333
Q ss_pred cCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 003710 486 CGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKP-----NES-TFVSLLSSCSISGMVDEGWNYFDSMRKD 559 (801)
Q Consensus 486 ~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 559 (801)
.|....+ ...+..+...+.+.|++++|+++|++....-... +.. .|...+-.+...|++..|.+.|+.....
T Consensus 148 e~~~~~a--~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 148 EGSPHSA--AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp TT-HHHH--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred CCChhhH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3322222 2345667777888999999999999988754322 221 2333444666689999999999987632
Q ss_pred c-CCCCC--hHHHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 003710 560 Y-GIVPG--IEHYGCIIDLLGR--IGNLDQAKRFIEEMP 593 (801)
Q Consensus 560 ~-~~~p~--~~~~~~li~~~~~--~g~~~eA~~~~~~m~ 593 (801)
. ++..+ ......|++++-. ...+++|..-|+.+.
T Consensus 226 ~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 226 DPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp STTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 1 22222 3345556666643 345777777777765
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.20 E-value=0.0018 Score=68.61 Aligned_cols=103 Identities=16% Similarity=0.089 Sum_probs=79.0
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCC
Q 003710 537 LSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNND 613 (801)
Q Consensus 537 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~ 613 (801)
.......|++++|+++|+.+.+ +.|+ ...|..+..+|.+.|++++|+..+++... .| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 4556677889999999888874 3555 77788888888888888888888887743 33 45677777778888888
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHHHHHH
Q 003710 614 IVSAEFAARHVLSSAQDNTGCYVLLSNMY 642 (801)
Q Consensus 614 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 642 (801)
++.|+..++++++++|++......+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88888888888888888887766654443
No 162
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0026 Score=62.79 Aligned_cols=105 Identities=15% Similarity=0.075 Sum_probs=88.6
Q ss_pred CCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcC---CHHHHHHHHHHHHccCCCCchhHH
Q 003710 563 VPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNN---DIVSAEFAARHVLSSAQDNTGCYV 636 (801)
Q Consensus 563 ~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~ 636 (801)
.|+ .+.|..|...|.+.|+.+.|..-|.+... .+++..+..+..++.... ...++..+++++++++|.|.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 465 89999999999999999999999987643 456777777777765443 467889999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCccCC
Q 003710 637 LLSNMYAEAGRWEDVEQIKAIMEKEGLKKTT 667 (801)
Q Consensus 637 ~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~ 667 (801)
.|+-.+..+|++.+|...|+.|.+.....+|
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999987654333
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.16 E-value=0.0043 Score=65.82 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=82.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHH
Q 003710 500 VIIMAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLG 577 (801)
Q Consensus 500 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~ 577 (801)
.....+...|++++|+++|++.++. .|+ ...|..+..++.+.|++++|+..++.+.+ +.|+ ...|..+..+|.
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHH
Confidence 3456677889999999999999984 454 55677888899999999999999999874 4565 778999999999
Q ss_pred hcCCHHHHHHHHHhCCC-CCCcchHHHHHHHH
Q 003710 578 RIGNLDQAKRFIEEMPS-APTARIWGALLTAS 608 (801)
Q Consensus 578 ~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~~ 608 (801)
..|++++|...+++... .|+......++..|
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999998753 46554444444443
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.08 E-value=0.0047 Score=60.61 Aligned_cols=96 Identities=18% Similarity=0.114 Sum_probs=53.2
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-cchHHHHHHHHHhcCCHHH
Q 003710 540 CSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APT-ARIWGALLTASRKNNDIVS 616 (801)
Q Consensus 540 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~~~~~~g~~~~ 616 (801)
..+.+++++|+..|.... .+.|+ ..-|..=..+|.+.|.++.|.+-.+.... .|. ...|..|..++...|+.++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 344555666666655554 34444 33444445556666666666555554432 222 3456666666666666666
Q ss_pred HHHHHHHHHccCCCCchhHHHH
Q 003710 617 AEFAARHVLSSAQDNTGCYVLL 638 (801)
Q Consensus 617 a~~~~~~~~~~~p~~~~~~~~l 638 (801)
|++.|+++++++|++...-..|
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHH
Confidence 6666666666666666444333
No 165
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.02 E-value=0.012 Score=55.21 Aligned_cols=99 Identities=13% Similarity=0.176 Sum_probs=61.9
Q ss_pred hcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCC
Q 003710 451 IATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAI--HGLGKISIQLFSEMREKGIKP 528 (801)
Q Consensus 451 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p 528 (801)
.|.++-....+..|.+.|+..|..+|+.|++.+=| |.+--- .++.+--. ..+-+-|++++++|...|+-|
T Consensus 65 RGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~-------n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~P 136 (228)
T PF06239_consen 65 RGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPR-------NFFQAEFMHYPRQQECAIDLLEQMENNGVMP 136 (228)
T ss_pred cChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccc-------cHHHHHhccCcHHHHHHHHHHHHHHHcCCCC
Confidence 35555566666777778888888888888887766 332211 11111111 123455788888888888888
Q ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhH
Q 003710 529 NESTFVSLLSSCSISGMV-DEGWNYFDSMR 557 (801)
Q Consensus 529 ~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~ 557 (801)
|..|+..|+..+.+.+.. .+.+++.-.|-
T Consensus 137 d~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 137 DKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred cHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 888888888888776543 33333333333
No 166
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.02 E-value=0.0073 Score=50.12 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=56.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhCCCC-CCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 003710 407 NAMIAAYVRNGQNREAMELFQDLWSEPL-KPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAK 485 (801)
Q Consensus 407 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 485 (801)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++...-.
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~------------------------------ 78 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS------------------------------ 78 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc------------------------------
Confidence 3445555555666666666666666666 666666666665554422110
Q ss_pred cCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 003710 486 CGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSI 542 (801)
Q Consensus 486 ~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 542 (801)
++ -.++.-+.+.+|+.|+..+++|+..||+.++.++.+
T Consensus 79 -----~~--------------ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 79 -----ED--------------IENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred -----hh--------------HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 01 112233457899999999999999999999988764
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.01 E-value=0.018 Score=58.85 Aligned_cols=135 Identities=13% Similarity=0.208 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003710 496 VSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSS-CSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIID 574 (801)
Q Consensus 496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 574 (801)
.+|-.++....+.+..+.|-.+|.+.++.+ .-+...|...... +...++.+.|.++|+...+.++ .+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 468888888888888999999999998643 2233445444433 3335777779999999998653 45778899999
Q ss_pred HHHhcCCHHHHHHHHHhCCCC-CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCch
Q 003710 575 LLGRIGNLDQAKRFIEEMPSA-PT----ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTG 633 (801)
Q Consensus 575 ~~~~~g~~~eA~~~~~~m~~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 633 (801)
.+.+.|+.+.|..+|++.... |. ..+|...+..-...|+++....+.+++.+..|++..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999987653 33 358999999999999999999999999998887543
No 168
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.99 E-value=0.0031 Score=63.90 Aligned_cols=130 Identities=11% Similarity=0.070 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHH---hHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-------C-CCCc
Q 003710 531 STFVSLLSSCSISGMVDEGWNYFDS---MRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMP-------S-APTA 598 (801)
Q Consensus 531 ~t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~-------~-~p~~ 598 (801)
..|..|.+.|.-.|+++.|+...+. +.++||-+.. ...++.|.+++.-.|+++.|.+.++.-. . ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3577777777788999999987764 3344554443 5678889999999999999999887532 1 1334
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHcc----C--CCCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 599 RIWGALLTASRKNNDIVSAEFAARHVLSS----A--QDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 599 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
.+.-+|.+.|....+++.|+..+.+=+.+ + ......+..|+++|...|.-+.|..+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56667888888888888888776654432 2 23456788999999999999999887665543
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.99 E-value=0.0065 Score=49.84 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 003710 497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIID 574 (801)
Q Consensus 497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 574 (801)
+|..+...+...|++++|+..+++..+. .|+ ...+..+...+...|++++|.+.|+...+. .|. ...+..+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~ 76 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL---DPDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcchhHHHHHHH
Confidence 3556667777777777777777777663 333 345555666666667777777777666532 222 345555555
Q ss_pred HHHhcCCHHHHHHHHHh
Q 003710 575 LLGRIGNLDQAKRFIEE 591 (801)
Q Consensus 575 ~~~~~g~~~eA~~~~~~ 591 (801)
.+...|+.++|.+.++.
T Consensus 77 ~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 77 AYYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 55556666655555544
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.97 E-value=0.017 Score=64.08 Aligned_cols=65 Identities=17% Similarity=0.085 Sum_probs=47.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710 597 TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG 662 (801)
Q Consensus 597 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 662 (801)
++..+.++.-.....|+.++|...++++++++| +...|..++.+|...|+.++|.+.+++....+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345566665555566788888888888888887 46677888888888888888888777766543
No 171
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.97 E-value=0.0076 Score=50.02 Aligned_cols=79 Identities=10% Similarity=-0.024 Sum_probs=67.2
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHhCCC-CCChhhHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCchHHHH
Q 003710 204 NSMIGGYCSVGDGVSSLVFFKEMQNCGL-RYDRFSLISALGAISIEG--------CLKIGKEIHCQVIKSGLEMDVMVQT 274 (801)
Q Consensus 204 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~l~~~~~~~g~~~~~~~~~ 274 (801)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+-....+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999999 999999999999987654 2345678899999999999999999
Q ss_pred HHHHHHhc
Q 003710 275 SLVDMYGK 282 (801)
Q Consensus 275 ~li~~y~~ 282 (801)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987664
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.96 E-value=0.011 Score=55.72 Aligned_cols=82 Identities=13% Similarity=-0.038 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHH
Q 003710 566 IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APT----ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSN 640 (801)
Q Consensus 566 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 640 (801)
...+..+...|.+.|++++|...+++... .|+ ...|..+...+...|+.+.|...++++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 34455666666667777777776665532 122 3467777778888888999999999999999998888888888
Q ss_pred HHHHcCC
Q 003710 641 MYAEAGR 647 (801)
Q Consensus 641 ~y~~~g~ 647 (801)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.95 E-value=0.0012 Score=50.93 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=45.9
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710 609 RKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 609 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 661 (801)
...|+++.|...++++++.+|++..+...++.+|.+.|++++|..+++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999876654
No 174
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.94 E-value=0.0027 Score=49.77 Aligned_cols=59 Identities=12% Similarity=0.040 Sum_probs=52.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 003710 605 LTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGL 663 (801)
Q Consensus 605 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 663 (801)
...+...++++.|...++.+++++|+++..+..++.+|.+.|++++|.+.++...+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35677889999999999999999999999999999999999999999999998886543
No 175
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.91 E-value=1.2 Score=50.77 Aligned_cols=161 Identities=12% Similarity=0.031 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 003710 496 VSWNVIIMAYAIHGLGK---ISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCI 572 (801)
Q Consensus 496 ~~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 572 (801)
.+-|.|+..+.+.++.. +|+-+++.-.... +-|..+-..+|..|+-.|-+..|.+.|+.+.-+ .|.-|..-|- +
T Consensus 437 Lav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~ 513 (932)
T KOG2053|consen 437 LAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-I 513 (932)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-H
Confidence 35688999999988866 4455555544421 334556677889999999999999999998655 6666633322 2
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCC----CchhHHHHHHHHHHcC
Q 003710 573 IDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQD----NTGCYVLLSNMYAEAG 646 (801)
Q Consensus 573 i~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g 646 (801)
...+...|++..|...++.... ..+..--.-++.--.++|.+..-.+...---++.-. -..+-....+.....+
T Consensus 514 ~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 514 FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445566777777666654321 111111112334445667776655433322222211 1122346667778888
Q ss_pred CchHHHHHHHHHH
Q 003710 647 RWEDVEQIKAIME 659 (801)
Q Consensus 647 ~~~~a~~~~~~m~ 659 (801)
+.++-.+....|+
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 8888888888776
No 176
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.90 E-value=0.00087 Score=43.17 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=30.4
Q ss_pred HHHHHccCCCCchhHHHHHHHHHHcCCchHHH
Q 003710 621 ARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVE 652 (801)
Q Consensus 621 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 652 (801)
++++++++|+|+.+|..|+.+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67899999999999999999999999999986
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.89 E-value=0.0082 Score=56.26 Aligned_cols=93 Identities=13% Similarity=-0.128 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHH
Q 003710 566 IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APT----ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSN 640 (801)
Q Consensus 566 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 640 (801)
...|..++..+...|++++|...+++... .|+ ..+|..+...+...|+.++|+..++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 45566667777777888888887776632 222 2477888888889999999999999999999998888888888
Q ss_pred HHH-------HcCCchHHHHHHHHH
Q 003710 641 MYA-------EAGRWEDVEQIKAIM 658 (801)
Q Consensus 641 ~y~-------~~g~~~~a~~~~~~m 658 (801)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888776666544
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.87 E-value=0.027 Score=62.52 Aligned_cols=140 Identities=11% Similarity=-0.037 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc--------CCHHHHHHHHHHhHHh
Q 003710 494 DVVSWNVIIMAYAIH--G---LGKISIQLFSEMREKGIKPNES-TFVSLLSSCSIS--------GMVDEGWNYFDSMRKD 559 (801)
Q Consensus 494 d~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~ 559 (801)
+...|...+.|.... + ...+|+.+|++.++ ..||.. .+..+..++... +.+..+.+........
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 677899888886543 2 37789999999999 678854 455443333221 1223334444433221
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhH
Q 003710 560 YGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCY 635 (801)
Q Consensus 560 ~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 635 (801)
.....+...|..+.-.....|++++|...+++... .|+...|..+...+...|+.++|...++++++++|.++..|
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 11223457788887777788999999999998865 68888888889999999999999999999999999988643
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.86 E-value=0.0036 Score=61.41 Aligned_cols=88 Identities=16% Similarity=0.071 Sum_probs=78.3
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-C-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchH
Q 003710 573 IDLLGRIGNLDQAKRFIEEMPS-A-PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWED 650 (801)
Q Consensus 573 i~~~~~~g~~~eA~~~~~~m~~-~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 650 (801)
.+-+.+.+++++|++.|.+... . -|++.|..=..++.+.|.++.|.+.++.++.++|.....|..|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4556788999999999998764 3 4677778888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 003710 651 VEQIKAIMEK 660 (801)
Q Consensus 651 a~~~~~~m~~ 660 (801)
|.+.|++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999877655
No 180
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.85 E-value=0.8 Score=47.96 Aligned_cols=179 Identities=12% Similarity=0.078 Sum_probs=94.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHh----CCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCC
Q 003710 240 SALGAISIEGCLKIGKEIHCQVIKS----GLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNA 315 (801)
Q Consensus 240 ~ll~a~~~~~~~~~a~~l~~~~~~~----g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g 315 (801)
.....+...|.+.+|+.+++.++.. ....+..+||.++-++++.=-++- -+.+...=..-|--||-.|.+.=
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki 208 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKI 208 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHH
Confidence 4455566777888887777776654 344788888888777776532221 11111111223555555554321
Q ss_pred ChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhcc--CChHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHccCChHHHH
Q 003710 316 HFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKL--GALLEGKSIHGYAIRKGFLPNV-ALETALIDMYAGSGALKMTE 392 (801)
Q Consensus 316 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~--g~~~~a~~~~~~~~~~g~~~~~-~~~~~Li~~y~k~g~~~~A~ 392 (801)
+.-++ -.-. .+.|....+..++....-. ..+.--.+++..-.+.-+.|+- -+...|++-+.+ +.+++.
T Consensus 209 ~~~d~------~~Y~-k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~ 279 (549)
T PF07079_consen 209 HAFDQ------RPYE-KFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVG 279 (549)
T ss_pred HHHhh------chHH-hhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHH
Confidence 11111 0001 2344444444444443322 2333344555555555555553 334455555554 444444
Q ss_pred HHHhcC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q 003710 393 KLFGSM--------IEKNLVSWNAMIAAYVRNGQNREAMELFQDLWS 431 (801)
Q Consensus 393 ~~f~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 431 (801)
.+-+.+ .++=+.++..+++...+.++..+|-+.+.-+..
T Consensus 280 ~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 280 HFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 443332 233456788888888999999998888877654
No 181
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.84 E-value=0.0025 Score=51.62 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=54.4
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHH
Q 003710 508 HGLGKISIQLFSEMREKGI-KPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQA 585 (801)
Q Consensus 508 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA 585 (801)
.|++++|+.+|+++.+..- .|+...+..+..++.+.|++++|..+++. . ...|. ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5788888888888887432 12344555577888888888888888877 2 22333 34444557888888888888
Q ss_pred HHHHHh
Q 003710 586 KRFIEE 591 (801)
Q Consensus 586 ~~~~~~ 591 (801)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888765
No 182
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.74 E-value=0.014 Score=61.92 Aligned_cols=108 Identities=10% Similarity=0.134 Sum_probs=63.5
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHhcCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHH
Q 003710 369 LPNVALETALIDMYAGSGALKMTEKLFGSMIEK------NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFA 442 (801)
Q Consensus 369 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 442 (801)
..+......+++......+++++..++.+.... -..|..++|..|...|..++++++++.=...|+-||..|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334445555566555556666666655544221 12234466666666666666666666666666666666666
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHH
Q 003710 443 SILPAYAEIATLSDSMQIHSLITKLGLVSNIYIS 476 (801)
Q Consensus 443 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 476 (801)
.||..+.+.|++..|.++...|...+...+..++
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~ 176 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQ 176 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHH
Confidence 6666666666666666666666554444444333
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.74 E-value=0.041 Score=47.56 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHH
Q 003710 500 VIIMAYAIHGLGKISIQLFSEMREKGIKPNE--STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVP-GIEHYGCIIDLL 576 (801)
Q Consensus 500 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~ 576 (801)
.+..++-..|+.++|+.+|++....|+.... ..+..+.+++...|++++|..+|+.....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 4556778889999999999999998876653 3577788899999999999999999886532211 123333445677
Q ss_pred HhcCCHHHHHHHHHh
Q 003710 577 GRIGNLDQAKRFIEE 591 (801)
Q Consensus 577 ~~~g~~~eA~~~~~~ 591 (801)
...|+.+||++.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 888999998887644
No 184
>PRK15331 chaperone protein SicA; Provisional
Probab=96.73 E-value=0.011 Score=53.26 Aligned_cols=88 Identities=9% Similarity=-0.025 Sum_probs=74.2
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchH
Q 003710 573 IDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWED 650 (801)
Q Consensus 573 i~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 650 (801)
.--+...|++++|..+|.-+.. .-+..-|..|...|...++++.|...+..+..++++|+.++...+..|...|+.++
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 3344567888888888775432 34566788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 003710 651 VEQIKAIMEK 660 (801)
Q Consensus 651 a~~~~~~m~~ 660 (801)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999988766
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.68 E-value=0.0028 Score=48.35 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=42.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 003710 572 IIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNT 632 (801)
Q Consensus 572 li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 632 (801)
+...+.+.|++++|.+.++.... .| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 34566677777777777776654 24 456677777778888888888888888888888764
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.63 E-value=0.014 Score=62.03 Aligned_cols=115 Identities=10% Similarity=0.040 Sum_probs=76.4
Q ss_pred hhhHhHHHHHHHhcCCchHHHHhhccCCC-C-----CcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHH
Q 003710 169 VYVCNSLIVMYMKLGCVECAERMFDEMPV-R-----DTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISAL 242 (801)
Q Consensus 169 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 242 (801)
......+++......+++++..++-+... | -..|..++|+.|.+.|..++++.+++.=...|+-||.+||+.+|
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 33344444444444455555555444331 1 12344578888888888888888888877888888888888888
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcC
Q 003710 243 GAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKC 283 (801)
Q Consensus 243 ~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~ 283 (801)
..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888777776666666666555555554
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.56 E-value=0.6 Score=42.76 Aligned_cols=152 Identities=14% Similarity=0.080 Sum_probs=110.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCH
Q 003710 504 AYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNL 582 (801)
Q Consensus 504 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~ 582 (801)
+..+.=+++..++-..+-.+ +.|....-..|..+....|+..||...|++... |+-.+ ....-.+..+....++.
T Consensus 65 a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 65 ALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccH
Confidence 33344444444433333333 567777778888999999999999999998875 66554 77777888888889999
Q ss_pred HHHHHHHHhCCC-CC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 003710 583 DQAKRFIEEMPS-AP---TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIM 658 (801)
Q Consensus 583 ~eA~~~~~~m~~-~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 658 (801)
.+|...+++.-. .| .+..-..+...+...|..+.|+..++.++.--|+ +..-.....+++++|+.+++..-+..+
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 999998887643 22 2333445667888999999999999999987775 444556788899999998887665554
Q ss_pred HH
Q 003710 659 EK 660 (801)
Q Consensus 659 ~~ 660 (801)
-+
T Consensus 220 ~d 221 (251)
T COG4700 220 VD 221 (251)
T ss_pred HH
Confidence 43
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.53 E-value=0.052 Score=49.38 Aligned_cols=106 Identities=15% Similarity=0.208 Sum_probs=92.1
Q ss_pred hHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--
Q 003710 556 MRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS---APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQD-- 630 (801)
Q Consensus 556 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-- 630 (801)
..++..+-|++.+--.|..++.+.|+..||...|++... ..|......+.++....++...|...++++.+.+|.
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 334446679999999999999999999999999998754 467788888889999999999999999999998875
Q ss_pred CchhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710 631 NTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 631 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 661 (801)
.+....+++..|...|+..+|+.-|+...+.
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 5667889999999999999999999888764
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.52 E-value=0.21 Score=49.67 Aligned_cols=159 Identities=13% Similarity=0.107 Sum_probs=105.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 003710 498 WNVIIMAYAIHGLGKISIQLFSEMREKGIKPNEST----FVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCII 573 (801)
Q Consensus 498 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 573 (801)
+-.....+...|++++|++.|+++... -|+... ...+..++.+.+++++|...|+...+.+.-.|+.. |....
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~-~a~Y~ 111 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-YVLYM 111 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH-HHHHH
Confidence 334455567789999999999999884 455432 24566788999999999999999998776666642 22222
Q ss_pred HHHH--hcC---------------C---HHHHHHHHHhCCCC-CCc------chHHH------------HHHHHHhcCCH
Q 003710 574 DLLG--RIG---------------N---LDQAKRFIEEMPSA-PTA------RIWGA------------LLTASRKNNDI 614 (801)
Q Consensus 574 ~~~~--~~g---------------~---~~eA~~~~~~m~~~-p~~------~~~~~------------ll~~~~~~g~~ 614 (801)
.+++ ..+ + ..+|++.++....+ |+. ..... +..-+.+.|++
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 2221 111 1 23455555544321 322 11111 11236677888
Q ss_pred HHHHHHHHHHHccCCCC---chhHHHHHHHHHHcCCchHHHHHHHHHH
Q 003710 615 VSAEFAARHVLSSAQDN---TGCYVLLSNMYAEAGRWEDVEQIKAIME 659 (801)
Q Consensus 615 ~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 659 (801)
.-|..-++.+++.-|+. ......+.++|.+.|..++|..+...+.
T Consensus 192 ~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 192 VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 88899999999877764 4567788999999999999999887664
No 190
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=1.9 Score=48.09 Aligned_cols=114 Identities=11% Similarity=0.111 Sum_probs=87.7
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHH
Q 003710 527 KPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLT 606 (801)
Q Consensus 527 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~ 606 (801)
.-...|.+--+.-+..-|...+|.++-.+.+ .||...|..=+.+++..+++++-+++-+++.. +.-|.-+..
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe 752 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVE 752 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHH
Confidence 3444456666777788899999988866543 38888888888999999999999998888652 566788889
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 003710 607 ASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKA 656 (801)
Q Consensus 607 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 656 (801)
+|.+.|+.++|.....+.-. +.-...+|.+.|++.+|.++--
T Consensus 753 ~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999877665321 1257889999999999988653
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.50 E-value=0.0025 Score=49.14 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=34.0
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCcchH
Q 003710 542 ISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APTARIW 601 (801)
Q Consensus 542 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~ 601 (801)
..|++++|.++|+.+... .|+ ...+..++.+|.+.|++++|.++++++.. .|+...|
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 456777777777776643 343 55566666666667777776666666653 2443333
No 192
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.44 E-value=0.11 Score=46.83 Aligned_cols=89 Identities=7% Similarity=-0.127 Sum_probs=46.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcC
Q 003710 536 LLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNN 612 (801)
Q Consensus 536 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g 612 (801)
+..-+...|++++|.++|+.+.. +.|. ..-|-.|.-++-..|++++|++.+..... ..|+..+-.+..++...|
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 33344555555555555555542 3343 34444555555555555555555554322 233444555555555666
Q ss_pred CHHHHHHHHHHHHcc
Q 003710 613 DIVSAEFAARHVLSS 627 (801)
Q Consensus 613 ~~~~a~~~~~~~~~~ 627 (801)
+.+.|+..++.++..
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666655544
No 193
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.39 E-value=0.032 Score=56.99 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHhCCC--CCCcchHHHHHHH
Q 003710 531 STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGR-IGNLDQAKRFIEEMPS--APTARIWGALLTA 607 (801)
Q Consensus 531 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~ 607 (801)
.+|..++..+.+.+..+.|+.+|....+. -.-+..+|.....+-.+ .++.+.|.++|+.... ..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888899999999999999999999743 22235667777777444 5666669999998764 4677889999999
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCc---hhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710 608 SRKNNDIVSAEFAARHVLSSAQDNT---GCYVLLSNMYAEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 608 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 661 (801)
+...|+.+.++.++++.+..-|.+. ..|...++.=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998776654 57888888889999999999999999874
No 194
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.32 E-value=0.023 Score=53.50 Aligned_cols=90 Identities=11% Similarity=0.038 Sum_probs=66.6
Q ss_pred CCCChhhHHHHHHHHHc-----CCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcC----------------CChhHH
Q 003710 95 SYLDTYIWNVVIRGFVD-----NGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGL----------------LYLSEG 153 (801)
Q Consensus 95 ~~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~~~~~a 153 (801)
..+|-.+|..+|..|.+ .|..+-....+..|.+-|+.-|..+|+.||..+=+. .+.+-|
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 34566666666666654 356666777788888888888888898888877542 134567
Q ss_pred HHHHHHHHHhCCCCchhhHhHHHHHHHhcCC
Q 003710 154 EKVHGSLFKSGLNSDVYVCNSLIVMYMKLGC 184 (801)
Q Consensus 154 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 184 (801)
.+++++|...|+-||..++..|++.+++.+.
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888888888866543
No 195
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.31 E-value=1.7 Score=45.11 Aligned_cols=110 Identities=12% Similarity=0.121 Sum_probs=87.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 003710 532 TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKN 611 (801)
Q Consensus 532 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~ 611 (801)
+.+..+.-|...|....|.++-+ ++.+ |+..-|...+.+|+..|+|++-.++... +..++-|..++.+|...
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 45556677778888888777654 4455 8888999999999999999999888764 44568899999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 003710 612 NDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIM 658 (801)
Q Consensus 612 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 658 (801)
|+..+|.....++ .+..-+.+|.++|+|.+|.+.--+.
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999988877761 2256788999999999998875443
No 196
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.29 E-value=2.4 Score=46.76 Aligned_cols=278 Identities=14% Similarity=0.117 Sum_probs=135.9
Q ss_pred CChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCC----hhhHHHHHHHHhccCChHHHHHH
Q 003710 284 GVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPD----CITIINLLPSCTKLGALLEGKSI 359 (801)
Q Consensus 284 g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd----~~t~~~ll~~~~~~g~~~~a~~~ 359 (801)
|.+++|++++-+|..+|. -|..+.+.|++-...++++.= |-..| ...+..+-..++....++.|.+.
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888887777766664 345555666666666555432 11111 12455555555555555555555
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHh
Q 003710 360 HGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAM 439 (801)
Q Consensus 360 ~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 439 (801)
+.+--. ....+++|.+...+++-+.+-..+++. ....-.|...+...|.-++|.+.|-+--. |
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p--- 881 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRSL----P--- 881 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhccC----c---
Confidence 443211 112445555555555555555555443 23344566677777777777776644321 1
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHH----HhcCCccccchHHHHHHHHHHHHHcCCHHHHH
Q 003710 440 TFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMY----AKCGDLQTARDVVSWNVIIMAYAIHGLGKISI 515 (801)
Q Consensus 440 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y----~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~ 515 (801)
...+.+|....++.+|.++-+... -|.+. +|+.-+ ...++.-+| |.-+.+.|+.-+|.
T Consensus 882 --kaAv~tCv~LnQW~~avelaq~~~----l~qv~---tliak~aaqll~~~~~~ea---------Ie~~Rka~~~~daa 943 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELAQRFQ----LPQVQ---TLIAKQAAQLLADANHMEA---------IEKDRKAGRHLDAA 943 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcc----chhHH---HHHHHHHHHHHhhcchHHH---------HHHhhhcccchhHH
Confidence 134556666666666665543322 11111 111111 111222222 44556666666677
Q ss_pred HHHHHHHHC----CCCCCHHHHHHHHHHHh---------------ccCCHHHHHHHHHHhHHh--cCCC------CChHH
Q 003710 516 QLFSEMREK----GIKPNESTFVSLLSSCS---------------ISGMVDEGWNYFDSMRKD--YGIV------PGIEH 568 (801)
Q Consensus 516 ~l~~~m~~~----g~~p~~~t~~~ll~a~~---------------~~g~~~~a~~~~~~m~~~--~~~~------p~~~~ 568 (801)
+++.+|.++ +.+|-..--..+|.|.. ..|..++|..++++-... ..+. ....|
T Consensus 944 rll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyH 1023 (1189)
T KOG2041|consen 944 RLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYH 1023 (1189)
T ss_pred HHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHH
Confidence 777777543 44443332222222221 145555555544332110 0011 12345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC----CCCcchHHHHH
Q 003710 569 YGCIIDLLGRIGNLDQAKRFIEEMPS----APTARIWGALL 605 (801)
Q Consensus 569 ~~~li~~~~~~g~~~eA~~~~~~m~~----~p~~~~~~~ll 605 (801)
+-.|..--...|+.+.|+.---.+.. -|...+|+.|.
T Consensus 1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllA 1064 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLA 1064 (1189)
T ss_pred HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHH
Confidence 55555556678888888765433332 24445555443
No 197
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.27 E-value=0.33 Score=49.74 Aligned_cols=126 Identities=18% Similarity=0.184 Sum_probs=72.5
Q ss_pred CccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC-
Q 003710 488 DLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSIS-GMVDEGWNYFDSMRKDYGIVPG- 565 (801)
Q Consensus 488 ~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~- 565 (801)
++++| +..|...+..|...|++..|-+++.++ ...|... |++++|.++|+...+-|.....
T Consensus 89 ~~~~A--i~~~~~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~ 151 (282)
T PF14938_consen 89 DPDEA--IECYEKAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSP 151 (282)
T ss_dssp THHHH--HHHHHHHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred CHHHH--HHHHHHHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 44444 234555555566666666655555544 3345555 7778888777776654433222
Q ss_pred ---hHHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCcchH---HHHH---HHHHhcCCHHHHHHHHHHHHccCCC
Q 003710 566 ---IEHYGCIIDLLGRIGNLDQAKRFIEEMPSA---PTARIW---GALL---TASRKNNDIVSAEFAARHVLSSAQD 630 (801)
Q Consensus 566 ---~~~~~~li~~~~~~g~~~eA~~~~~~m~~~---p~~~~~---~~ll---~~~~~~g~~~~a~~~~~~~~~~~p~ 630 (801)
...+..+..++.+.|++++|.+++++.... .+..-| ..++ -.+...||...|...+++....+|.
T Consensus 152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 445667778888888999998888865321 111111 1222 2345678888899999988888875
No 198
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.22 E-value=1.8 Score=44.55 Aligned_cols=140 Identities=19% Similarity=0.152 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH--HHHH-
Q 003710 512 KISIQLFSEMREKGIKPNEST-FVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLD--QAKR- 587 (801)
Q Consensus 512 ~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~--eA~~- 587 (801)
..|...-.+..+ +.||-+- -..-..++.+.|++.++-.+++.+-+ .+|.+..+...+ +.|.|+.. ...+
T Consensus 246 ~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdta~dRlkRa 318 (531)
T COG3898 246 ASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGDTALDRLKRA 318 (531)
T ss_pred HHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCCcHHHHHHHH
Confidence 334444444433 6777553 33445688999999999999998875 456655544332 34555522 2221
Q ss_pred -HHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHc-CCchHHHHHHHHHHH
Q 003710 588 -FIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEA-GRWEDVEQIKAIMEK 660 (801)
Q Consensus 588 -~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~ 660 (801)
-++.|+ +.+..+..++..+-...|++..|....+.+.+..|. .+.|.+|+++-... |+-.+++..+.+...
T Consensus 319 ~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 319 KKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 133343 345667777788888999999999999999999986 56788999988666 988888877655443
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.16 E-value=0.0079 Score=46.48 Aligned_cols=63 Identities=19% Similarity=0.132 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcC-CHHHHHHHHHHHHccCC
Q 003710 567 EHYGCIIDLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNN-DIVSAEFAARHVLSSAQ 629 (801)
Q Consensus 567 ~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 629 (801)
..|..+...+.+.|++++|+..|++... .| +...|..+..++...| +.++|...++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4455555555556666666655555432 22 3455666666666666 56777777777777666
No 200
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.13 E-value=2.2 Score=44.84 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=13.6
Q ss_pred HHHcCC-HHHHHHHHHHHhC
Q 003710 413 YVRNGQ-NREAMELFQDLWS 431 (801)
Q Consensus 413 ~~~~g~-~~~A~~l~~~m~~ 431 (801)
+-+.|. -++|+++++...+
T Consensus 389 lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred HHhcCCccHHHHHHHHHHHH
Confidence 444555 7888898888875
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.09 E-value=0.048 Score=54.68 Aligned_cols=60 Identities=8% Similarity=0.005 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---chhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 601 WGALLTASRKNNDIVSAEFAARHVLSSAQDN---TGCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 601 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
+-.+...+...|+++.|...++++++..|++ +..+..++.+|...|++++|.++++.+.+
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344445555555555555555555555543 23344445556666666666666655544
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.08 E-value=0.075 Score=48.34 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=52.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 600 IWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 600 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
....++..+...|+.+.|...++.++..+|-+...|..++.+|...|+..+|.++++.++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4456677788899999999999999999999999999999999999999999999988854
No 203
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.03 E-value=0.013 Score=40.42 Aligned_cols=42 Identities=26% Similarity=0.287 Sum_probs=36.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHH
Q 003710 599 RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSN 640 (801)
Q Consensus 599 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 640 (801)
.+|..+..++...|+.+.|++.++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888899999999999999999999999999988877753
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.03 E-value=0.039 Score=47.68 Aligned_cols=82 Identities=17% Similarity=0.094 Sum_probs=45.8
Q ss_pred HHHhcCCHHHHHHHHHhCCCC----C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCC---CchhHHHHHHHHHHcC
Q 003710 575 LLGRIGNLDQAKRFIEEMPSA----P-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQD---NTGCYVLLSNMYAEAG 646 (801)
Q Consensus 575 ~~~~~g~~~eA~~~~~~m~~~----p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~g 646 (801)
++-..|+.++|..++++.... + -...+..+.+.++..|+.++|..++++.++..|+ +......++-.+...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 344445555555555443221 0 0123344555666666666666666666666565 4555556666777777
Q ss_pred CchHHHHHHH
Q 003710 647 RWEDVEQIKA 656 (801)
Q Consensus 647 ~~~~a~~~~~ 656 (801)
+++||.+.+-
T Consensus 90 r~~eAl~~~l 99 (120)
T PF12688_consen 90 RPKEALEWLL 99 (120)
T ss_pred CHHHHHHHHH
Confidence 7777776653
No 205
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.14 Score=52.57 Aligned_cols=152 Identities=11% Similarity=0.032 Sum_probs=97.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhHHhcCCCCChHH-------------
Q 003710 504 AYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLS--SCSISGMVDEGWNYFDSMRKDYGIVPGIEH------------- 568 (801)
Q Consensus 504 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~------------- 568 (801)
++...|+.++|...--..++. .++. .+..+++ ++.-.++.+.|...|++.. .+.|+...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHH
Confidence 344456666655554444432 1211 1222222 2334566677777776654 33444221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-C-----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHH
Q 003710 569 YGCIIDLLGRIGNLDQAKRFIEEMPS-A-----PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMY 642 (801)
Q Consensus 569 ~~~li~~~~~~g~~~eA~~~~~~m~~-~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 642 (801)
+.-=.+-..+.|++.+|.+.+.+... . |+...|.....+..+.|+.++|..-.+.+++++|.-...|..-++.+
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 11123445678899999988887643 2 44445555555667889999999999999999998888888899999
Q ss_pred HHcCCchHHHHHHHHHHHC
Q 003710 643 AEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 643 ~~~g~~~~a~~~~~~m~~~ 661 (801)
...++|++|.+-++...+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999988877653
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.94 E-value=0.79 Score=49.86 Aligned_cols=222 Identities=13% Similarity=0.001 Sum_probs=105.1
Q ss_pred HHHHHHHhcCCChhHHHH--HHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCC
Q 003710 138 PFVIKACAGLLYLSEGEK--VHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGD 215 (801)
Q Consensus 138 ~~ll~~~~~~~~~~~a~~--~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~ 215 (801)
+..-++|.+.+++.--+- -++.+.+.|-.|+... +...++-.|.+.+|.++|.+ .|.
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~ 660 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGH 660 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCc
Confidence 333445554444433222 2345566676676543 33455667888888888865 445
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhh
Q 003710 216 GVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNM 295 (801)
Q Consensus 216 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~ 295 (801)
-..|+++|.+|+-- -...-+...|+-++-+.+...-.+- ..|+.--.+...++...|+.++|..+.-+
T Consensus 661 enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d 728 (1081)
T KOG1538|consen 661 ENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGD 728 (1081)
T ss_pred hhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhc
Confidence 55666666655421 0111122233333322222211110 00111111233444555666666555322
Q ss_pred cCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH
Q 003710 296 IFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALE 375 (801)
Q Consensus 296 m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 375 (801)
+|-.+-+.++-+++-. .+..+...+-.-+-+...+..|.++|..|-+ .
T Consensus 729 ------------------~gW~d~lidI~rkld~-----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ 776 (1081)
T KOG1538|consen 729 ------------------HGWVDMLIDIARKLDK-----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------L 776 (1081)
T ss_pred ------------------ccHHHHHHHHHhhcch-----hhhhHHHHHHHHHhhccccchHHHHHHHhcc---------H
Confidence 2222333333333211 2233344444444455566667777665533 2
Q ss_pred HHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003710 376 TALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAME 424 (801)
Q Consensus 376 ~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (801)
.+++++....+++++|..+-++.++--...|-.-..-++.+.+++||.+
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH
Confidence 3577778888888888888887766422222222333344444444433
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.92 E-value=0.11 Score=52.28 Aligned_cols=63 Identities=14% Similarity=0.087 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-CCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 003710 570 GCIIDLLGRIGNLDQAKRFIEEMPS-APT----ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNT 632 (801)
Q Consensus 570 ~~li~~~~~~g~~~eA~~~~~~m~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 632 (801)
-.+..+|...|++++|...|+.+.. -|+ ...|..+...+...|+.+.|...++++++..|++.
T Consensus 184 y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 184 YWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 3444444444444444444444321 111 22333344455566777777777777777777654
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.28 Score=47.29 Aligned_cols=134 Identities=12% Similarity=-0.008 Sum_probs=90.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc----CCCCChHHHHHHHH
Q 003710 499 NVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDY----GIVPGIEHYGCIID 574 (801)
Q Consensus 499 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~~~~~~~li~ 574 (801)
+.++..+.-+|.+.-.+.++++.++..-+-+......|.+.-.+.|+.+.|..+|+...+.. ++.-...+...+..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 45566666677777778899999886555566777888888889999999999999766542 22333333344455
Q ss_pred HHHhcCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 003710 575 LLGRIGNLDQAKRFIEEMPSA--PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNT 632 (801)
Q Consensus 575 ~~~~~g~~~eA~~~~~~m~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 632 (801)
.|.-++++.+|...+.+++.. .|++..+.-.-...-.|+...|.+..+.+++..|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 566777888888888887752 2333333333333456778888888888888877643
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.80 E-value=0.034 Score=58.57 Aligned_cols=62 Identities=15% Similarity=-0.021 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCcc----hHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 003710 566 IEHYGCIIDLLGRIGNLDQAKRFIEEMP-SAPTAR----IWGALLTASRKNNDIVSAEFAARHVLSS 627 (801)
Q Consensus 566 ~~~~~~li~~~~~~g~~~eA~~~~~~m~-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 627 (801)
...++.+..+|.+.|++++|+..+++.. ..|+.. .|..+..++...|+.++|...+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555555555555555555432 234422 3555555555555555555555555554
No 210
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=1.5 Score=45.47 Aligned_cols=88 Identities=11% Similarity=-0.043 Sum_probs=56.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHH
Q 003710 502 IMAYAIHGLGKISIQLFSEMREK---GIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLG 577 (801)
Q Consensus 502 i~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~ 577 (801)
..-..+.|++.+|.+.|.+.+.. .++|+...|.....+..+.|+.++|+.--+... .+.|. +..|-.-..++.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHH
Confidence 34456677777888888887762 234445556666667778888888887776654 34444 334444445555
Q ss_pred hcCCHHHHHHHHHhC
Q 003710 578 RIGNLDQAKRFIEEM 592 (801)
Q Consensus 578 ~~g~~~eA~~~~~~m 592 (801)
-.++|++|.+-+++.
T Consensus 333 ~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 667788888777754
No 211
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.70 E-value=4.4 Score=44.85 Aligned_cols=200 Identities=12% Similarity=0.033 Sum_probs=107.8
Q ss_pred CCCcccHHHHHHHHhcCCChhHHHHHHHHHHHh-CC--------CCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcc
Q 003710 131 KADYFTYPFVIKACAGLLYLSEGEKVHGSLFKS-GL--------NSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTV 201 (801)
Q Consensus 131 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~--------~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~ 201 (801)
.|.+..|..+.......-+++.|.+.|-+.... |+ -.+.....+=|.+| .|++++|.+++-+|..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 466666666655544444445554444322110 11 01111222223333 4889999999998887765
Q ss_pred cHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCC----hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 003710 202 SWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYD----RFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLV 277 (801)
Q Consensus 202 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li 277 (801)
-|..+.+.|++-...++++. -|-..| ...|..+-..++....++.|.+.+.+--.. ...+
T Consensus 766 ----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 36667777887777666543 111111 234555555566666666666665443111 1234
Q ss_pred HHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHH
Q 003710 278 DMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGK 357 (801)
Q Consensus 278 ~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~ 357 (801)
++|.+..++++-+.+-+.+++ |....-.|...+...|..++|.+.|-+--. | -..+.+|...+++.+|.
T Consensus 830 ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-----p-----kaAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSL-----P-----KAAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccC-----c-----HHHHHHHHHHHHHHHHH
Confidence 455555555555555444443 344455667777777888888777654321 1 23455666666666666
Q ss_pred HHH
Q 003710 358 SIH 360 (801)
Q Consensus 358 ~~~ 360 (801)
++-
T Consensus 899 ela 901 (1189)
T KOG2041|consen 899 ELA 901 (1189)
T ss_pred HHH
Confidence 554
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.69 E-value=0.035 Score=43.31 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=46.6
Q ss_pred HHHHhcCCHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHH
Q 003710 574 DLLGRIGNLDQAKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYV 636 (801)
Q Consensus 574 ~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 636 (801)
.+|.+.+++++|.++++.+.. .| +...|......+...|+++.|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 456777888888888777654 23 4556677777788888888888888888888887765443
No 213
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.57 E-value=2.1 Score=42.64 Aligned_cols=50 Identities=14% Similarity=0.087 Sum_probs=23.6
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHH
Q 003710 540 CSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFI 589 (801)
Q Consensus 540 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~ 589 (801)
|.+.|.+..|..-|+.+.+.|.-.|. .+....|+++|...|..++|.+..
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44445555555555555544433332 334444445555555555554443
No 214
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.56 E-value=0.091 Score=44.79 Aligned_cols=89 Identities=20% Similarity=0.147 Sum_probs=68.9
Q ss_pred HHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc----hhHHHHHHHHHHcCCc
Q 003710 575 LLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNT----GCYVLLSNMYAEAGRW 648 (801)
Q Consensus 575 ~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~y~~~g~~ 648 (801)
++...|++++|++.|.+... ...+..|+.-..+++-+|+.++|..-+++++++.-+.. ..|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 45677777777777766532 34566788888888889999999888888888754432 3588889999999999
Q ss_pred hHHHHHHHHHHHCCC
Q 003710 649 EDVEQIKAIMEKEGL 663 (801)
Q Consensus 649 ~~a~~~~~~m~~~g~ 663 (801)
++|+.-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999998887664
No 215
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.53 E-value=1 Score=38.76 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=82.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 003710 506 AIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQA 585 (801)
Q Consensus 506 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 585 (801)
...|..++..++..+...+. +..-++-++--...+-+-+-..+.++.+-+-+.+.|- ...-.++..|.+.|...|
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~~se- 87 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNKLSE- 87 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT---H-
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcchHH-
Confidence 34577777788888877632 3333444443333334445555666655443333321 122334555555554333
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCc
Q 003710 586 KRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLK 664 (801)
Q Consensus 586 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 664 (801)
.....+.+...+|..+.-.+++..+.+.+..++.....++++|.+.|+..++.+++.+.-++|++
T Consensus 88 --------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 --------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred --------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 23445667778888888888998888777778999999999999999999999999999999985
No 216
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.51 E-value=0.99 Score=52.95 Aligned_cols=94 Identities=21% Similarity=0.251 Sum_probs=69.3
Q ss_pred HHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHh
Q 003710 479 IVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNEST--FVSLLSSCSISGMVDEGWNYFDSM 556 (801)
Q Consensus 479 li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~a~~~~~~m 556 (801)
-.-+|.+||++++| +.+|...|++.+|+.+..+|.. .-|... -..|.+-+...++.-+|-++..+.
T Consensus 958 Aal~Ye~~GklekA---------l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 958 AALMYERCGKLEKA---------LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHhccHHHH---------HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 34578999999998 6889999999999999888743 122222 245777788889988888887765
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 003710 557 RKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMP 593 (801)
Q Consensus 557 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~ 593 (801)
.. .| .--+..|+++..+++|..+.....
T Consensus 1026 ~s----d~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1026 LS----DP-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred hc----CH-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 43 22 345677888889999998877654
No 217
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.50 E-value=1.4 Score=46.82 Aligned_cols=208 Identities=14% Similarity=0.151 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHhc-------CC
Q 003710 494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES----TFVSLLSSCSISGMVDEGWNYFDSMRKDY-------GI 562 (801)
Q Consensus 494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-------~~ 562 (801)
+...|+.+..+|...|++++|+..|++.++ +.||.. +|..+..+|.+.|+.++|+..++...+.+ .-
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~~ 151 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILN 151 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHHh
Confidence 778899999999999999999999999998 678854 58999999999999999999999887631 11
Q ss_pred CCCh------HHHHHHHHHHHhcCC-----HHHHHHHHHhCCCCCC----cchHHHHHHHHHhcCCHHHHHHHHH--HHH
Q 003710 563 VPGI------EHYGCIIDLLGRIGN-----LDQAKRFIEEMPSAPT----ARIWGALLTASRKNNDIVSAEFAAR--HVL 625 (801)
Q Consensus 563 ~p~~------~~~~~li~~~~~~g~-----~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~--~~~ 625 (801)
.|+. ..+..++..+.+.|. ...-.++..+.. .|- ...|.++..+ +-+.....+.+ +++
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~~~g~~~~~~~kL~~E~~-aPfR~~R~f~y~a~~as----a~ig~~i~~~rl~~a~ 226 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGEDIGSSFRRDLKLISEVQ-APFRGVRKFFYVAFTAA----AGISTFFTVPRLIRAI 226 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCCccCCchhhHHHHHHHHh-chHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 1221 245556666666664 222334444443 222 2333333222 21111111111 111
Q ss_pred ccCC-------------CCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCccC-------CcccEEEECCEEEEEe-cC
Q 003710 626 SSAQ-------------DNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKT-------TGCSMFEKNGETHRFI-NQ 684 (801)
Q Consensus 626 ~~~p-------------~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~-------~~~s~~~~~~~~~~~~-~~ 684 (801)
...+ -+.+....++.+|....+-+++ ++.+..++..+... .-.+..++.+....++ +|
T Consensus 227 aG~~~ap~l~~~~~nlaI~igav~~f~~L~~~e~k~~e~-q~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG 305 (453)
T PLN03098 227 QGGDGAPDVLETAGNAAINIGGIVAFVSLFLWENKKEEE-QMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAG 305 (453)
T ss_pred cCCCCCccHhHhhcccchHHHHHHHHHHHHHHHhcccHH-HHHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEEC
Confidence 2111 1344556677777655555554 23333444322111 0122334445555554 56
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhcCcc
Q 003710 685 DRSHSKTYLIYNVLDILLRKIGEDFYI 711 (801)
Q Consensus 685 ~~~h~~~~~i~~~l~~l~~~~~~~g~~ 711 (801)
+..| ..+-....+...+.+.+.|+.
T Consensus 306 ~~e~--v~~al~~ae~~r~~L~~r~Vl 330 (453)
T PLN03098 306 TKES--VTLAMQKAERYRTELLKRGVL 330 (453)
T ss_pred CHHH--HHHHHHHhHHHHHHHHHcCcE
Confidence 6533 444455667777888888865
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.50 E-value=0.021 Score=45.41 Aligned_cols=68 Identities=16% Similarity=0.254 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcC
Q 003710 567 EHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAG 646 (801)
Q Consensus 567 ~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 646 (801)
..|+.+...|.+.|++++|++.+++.. ..+...|+ ..|.-..++..++.+|...|
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al------------~~~~~~~~-------------~~~~~a~~~~~lg~~~~~~g 60 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKAL------------DIEEQLGD-------------DHPDTANTLNNLGECYYRLG 60 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH------------HHHHHTTT-------------HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH------------HHHHHHCC-------------CCHHHHHHHHHHHHHHHHcC
Confidence 455666666666666666666665532 00111111 01112446778888888888
Q ss_pred CchHHHHHHHHHH
Q 003710 647 RWEDVEQIKAIME 659 (801)
Q Consensus 647 ~~~~a~~~~~~m~ 659 (801)
++++|.+++++..
T Consensus 61 ~~~~A~~~~~~al 73 (78)
T PF13424_consen 61 DYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8888888877654
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.47 E-value=3.7 Score=42.37 Aligned_cols=294 Identities=17% Similarity=0.210 Sum_probs=170.4
Q ss_pred HHHHHHHHh--cCCChHHHHHHHhhc---CCCCcccHHHHHH--HHHhCCChhHHHHHHHHHHhCCCCCCChh--hHHHH
Q 003710 273 QTSLVDMYG--KCGVVDYAERLFNMI---FPRNIVAWNAMVG--GYVVNAHFLESFSCLRKMLEDDNLNPDCI--TIINL 343 (801)
Q Consensus 273 ~~~li~~y~--~~g~~~~A~~lf~~m---~~~~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~~g~~pd~~--t~~~l 343 (801)
|.+|-.++. -.|+-..|+++-.+- ...|....-.++. +-.-.|++++|.+-|+.|... |... -+..|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHH
Confidence 444444433 346777777766553 2234444334433 234568888888888888753 3222 22333
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcC-----CCCCHH--HHHHHHHHHHH-
Q 003710 344 LPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSM-----IEKNLV--SWNAMIAAYVR- 415 (801)
Q Consensus 344 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~-----~~~~~~--~~~~li~~~~~- 415 (801)
.-..-+.|+-+.+++.-+..-..- +.-.-...+++...+..|+++.|.++.+.- .++|+. .--.|+.+-+.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 444456677777777666554432 112345667788888888888888888754 334432 12223332221
Q ss_pred --cCCHHHHHHHHHHHhCCCCCCCHhhHH-HHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCcccc
Q 003710 416 --NGQNREAMELFQDLWSEPLKPDAMTFA-SILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTA 492 (801)
Q Consensus 416 --~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 492 (801)
.-+...|...-.+..+ +.||.+--. ..-.++.+.|++.++-.|++.+-+..-.|++ . ++..+.+.|+-...
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdta~d 313 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDTALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCcHHH
Confidence 2344455554444432 556644322 2345677788888888888888776544442 2 22233444433322
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 003710 493 RDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGC 571 (801)
Q Consensus 493 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 571 (801)
+ ++-.+.+.. ++||.. ....+..+-...|++..|..--+... ...|....|..
T Consensus 314 R---------------------lkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lL 367 (531)
T COG3898 314 R---------------------LKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLL 367 (531)
T ss_pred H---------------------HHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHH
Confidence 1 222233333 566644 56667777788888888887766654 45788888888
Q ss_pred HHHHHHhc-CCHHHHHHHHHhCCCCCCcchHHH
Q 003710 572 IIDLLGRI-GNLDQAKRFIEEMPSAPTARIWGA 603 (801)
Q Consensus 572 li~~~~~~-g~~~eA~~~~~~m~~~p~~~~~~~ 603 (801)
|.+.-... |+-.++..++.+....|....|..
T Consensus 368 lAdIeeAetGDqg~vR~wlAqav~APrdPaW~a 400 (531)
T COG3898 368 LADIEEAETGDQGKVRQWLAQAVKAPRDPAWTA 400 (531)
T ss_pred HHHHHhhccCchHHHHHHHHHHhcCCCCCcccc
Confidence 88887654 888888888887765555555553
No 220
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.39 E-value=3.3 Score=43.50 Aligned_cols=34 Identities=24% Similarity=0.019 Sum_probs=29.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 003710 599 RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNT 632 (801)
Q Consensus 599 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 632 (801)
....+++.++.-.||.+.|.+++++++++.|+.-
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 3446889999999999999999999999988754
No 221
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=6.2 Score=44.32 Aligned_cols=352 Identities=10% Similarity=-0.024 Sum_probs=188.2
Q ss_pred HHcCCChhHHHHHHHHHH--------HCCCCCCcccHHH-----HHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHH
Q 003710 109 FVDNGLFQEAVEFHHRMV--------CEGFKADYFTYPF-----VIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSL 175 (801)
Q Consensus 109 ~~~~~~~~~A~~~~~~m~--------~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 175 (801)
+.+..++++-..+...++ ..|++.+..-|.. +|.-+...+.+..|.++-..+-..-... ..++...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHH
Confidence 334445555444433332 3455555544433 4555566677777777766654221111 4566666
Q ss_pred HHHHHhcCC---chHHHHhhccCCC--CCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCC----CCChhhHHHHHHHHh
Q 003710 176 IVMYMKLGC---VECAERMFDEMPV--RDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGL----RYDRFSLISALGAIS 246 (801)
Q Consensus 176 i~~y~~~g~---~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~ll~a~~ 246 (801)
..-+.+..+ -+-+..+-+++.. ...++|..+.+-..+.|+.+-|..+++.=...+- -.+-.-+...+.-+.
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 666666532 2233334444444 5677888888888888888888887764222211 112334556666667
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC-CCcccHHHHHHHHHhCCChhHHHHHHH
Q 003710 247 IEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP-RNIVAWNAMVGGYVVNAHFLESFSCLR 325 (801)
Q Consensus 247 ~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~ 325 (801)
..|+.+...+++-++.+.-. ...+...+ .+.-.|..++..... .|.. -+..+.+.++-.+++.-|.
T Consensus 558 es~d~~Li~~Vllhlk~~~~---~s~l~~~l------~~~p~a~~lY~~~~r~~~~~----~l~d~y~q~dn~~~~a~~~ 624 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNKLN---RSSLFMTL------RNQPLALSLYRQFMRHQDRA----TLYDFYNQDDNHQALASFH 624 (829)
T ss_pred hcCCchhHHHHHHHHHHHHH---HHHHHHHH------HhchhhhHHHHHHHHhhchh----hhhhhhhcccchhhhhhhh
Confidence 77777776666655543310 00000000 112223333332211 1110 0111122222222222221
Q ss_pred HHH--h---CCCCCCChhhHHHHHHHHhccCChHHHHHHHH----------HHH-HhCCCCchhHHHHHHHHHHccCChH
Q 003710 326 KML--E---DDNLNPDCITIINLLPSCTKLGALLEGKSIHG----------YAI-RKGFLPNVALETALIDMYAGSGALK 389 (801)
Q Consensus 326 ~m~--~---~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~----------~~~-~~g~~~~~~~~~~Li~~y~k~g~~~ 389 (801)
.=. . ..|..|+.. ..-++|++........+..+ .+. +.|.....-+.+--+.-+...|+..
T Consensus 625 ~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k 701 (829)
T KOG2280|consen 625 LQASYAAETIEGRIPALK---TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNK 701 (829)
T ss_pred hhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchH
Confidence 100 0 013333332 33344444433222111111 111 1233333334444455566789999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCC
Q 003710 390 MTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGL 469 (801)
Q Consensus 390 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 469 (801)
+|.++-.+..-+|-..|---+.+++..+++++-+++-+.+.. ..-|.-+..+|.+.|+.++|...+.....
T Consensus 702 ~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~--- 772 (829)
T KOG2280|consen 702 RAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGG--- 772 (829)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCC---
Confidence 999999999888888888889999999999988877776642 45577788899999999999887654321
Q ss_pred CCchHHHHHHHHHHHhcCCcccc
Q 003710 470 VSNIYISNSIVYMYAKCGDLQTA 492 (801)
Q Consensus 470 ~~~~~~~~~li~~y~~~g~~~~A 492 (801)
+.-.+.+|.++|++.+|
T Consensus 773 ------l~ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 773 ------LQEKVKAYLRVGDVKEA 789 (829)
T ss_pred ------hHHHHHHHHHhccHHHH
Confidence 11467788888888777
No 222
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.74 Score=44.57 Aligned_cols=139 Identities=9% Similarity=0.120 Sum_probs=98.1
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH---
Q 003710 303 AWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALI--- 379 (801)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li--- 379 (801)
..+.++..+.-.|.+.-.+..+.+..+. .-+.++.....+.+...+.|+.+.+...++...+..-..|....+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4456777777778888888888888876 556667777778888888899999999998887754444444444333
Q ss_pred --HHHHccCChHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHH
Q 003710 380 --DMYAGSGALKMTEKLFGSMIEK---NLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASI 444 (801)
Q Consensus 380 --~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 444 (801)
..|.-.++..+|...|++++.. |++.-|.-.-+..-.|+..+|++..+.|.+. .|...+-.++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 3455667888888888877654 5566666555666678889999999999874 4555544444
No 223
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.03 E-value=0.26 Score=43.06 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 003710 496 VSWNVIIMAYAIHGLGKISIQLFSEMR---------------EKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDY 560 (801)
Q Consensus 496 ~~~~~li~~~~~~g~~~~A~~l~~~m~---------------~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 560 (801)
.++.++|.++++.|+.+....+++..= ...+.|+..+..+++.+|+..|++..|.++.+...+.|
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344555666666666555555554321 11233555555555555555555555555555555555
Q ss_pred CCCCChHHHHHH
Q 003710 561 GIVPGIEHYGCI 572 (801)
Q Consensus 561 ~~~p~~~~~~~l 572 (801)
++.-....|..|
T Consensus 83 ~I~i~~~~W~~L 94 (126)
T PF12921_consen 83 PIPIPKEFWRRL 94 (126)
T ss_pred CCCCCHHHHHHH
Confidence 544333333333
No 224
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.02 E-value=0.57 Score=49.84 Aligned_cols=153 Identities=18% Similarity=0.109 Sum_probs=94.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 003710 507 IHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAK 586 (801)
Q Consensus 507 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~ 586 (801)
+..+.+.-+++-++.++ +.||-.+-..|+ +--.+..+.++.++|++..+. | ...+..- ......|.. .
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~~---~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGHF---W 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccch---h
Confidence 45566666777787777 678766544433 333455688999998887653 1 0000000 000011111 1
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCc
Q 003710 587 RFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQD--NTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLK 664 (801)
Q Consensus 587 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 664 (801)
+.+..-...|-..+-..|...+++.|+.++|.+.++.+++..|. +..+...|+..|...+++.|+..++.+-.+..+.
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111111233444456777888999999999999999987775 4567889999999999999999999887655554
Q ss_pred cCCcccE
Q 003710 665 KTTGCSM 671 (801)
Q Consensus 665 ~~~~~s~ 671 (801)
|...++|
T Consensus 328 kSAti~Y 334 (539)
T PF04184_consen 328 KSATICY 334 (539)
T ss_pred chHHHHH
Confidence 4444433
No 225
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.15 Score=52.56 Aligned_cols=63 Identities=13% Similarity=-0.029 Sum_probs=56.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710 599 RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 599 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 661 (801)
..+..|...+.+.+++..|.+...++++++|+|...+..-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 355667777888899999999999999999999999999999999999999999999998874
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.82 Score=47.42 Aligned_cols=95 Identities=9% Similarity=-0.025 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 003710 566 IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYA 643 (801)
Q Consensus 566 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 643 (801)
...+..|.-+|.+.+++.+|++..++... ++|.-..-.=..+|...|+++.|+..++++++++|.|..+-..|+.+--
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34566778888999999999998887754 3555555555678899999999999999999999999988888887777
Q ss_pred HcCCchHH-HHHHHHHHH
Q 003710 644 EAGRWEDV-EQIKAIMEK 660 (801)
Q Consensus 644 ~~g~~~~a-~~~~~~m~~ 660 (801)
+..+..+. .++|..|-.
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 76666554 677777754
No 227
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.47 E-value=1.2 Score=40.03 Aligned_cols=125 Identities=16% Similarity=0.268 Sum_probs=73.7
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003710 442 ASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEM 521 (801)
Q Consensus 442 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m 521 (801)
..++..+...+.......+++.+.+.+ ..+..++|.++.+|++.+. .+.++.++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-----------------------~~ll~~l~~- 65 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-----------------------QKEIERLDN- 65 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-----------------------HHHHHHHHh-
Confidence 345555555566666666666666555 3555566667766665321 222333331
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCcch
Q 003710 522 REKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRI-GNLDQAKRFIEEMPSAPTARI 600 (801)
Q Consensus 522 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~eA~~~~~~m~~~p~~~~ 600 (801)
.++......++..|.+.+.++++..++..+.. |...++.+... ++.+.|.+++.+- .+...
T Consensus 66 -----~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~l 127 (140)
T smart00299 66 -----KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPEL 127 (140)
T ss_pred -----ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHH
Confidence 23344455577888888888888888776531 22233444444 7788888887762 35557
Q ss_pred HHHHHHHHH
Q 003710 601 WGALLTASR 609 (801)
Q Consensus 601 ~~~ll~~~~ 609 (801)
|..++..|.
T Consensus 128 w~~~~~~~l 136 (140)
T smart00299 128 WAEVLKALL 136 (140)
T ss_pred HHHHHHHHH
Confidence 777776654
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.43 E-value=0.14 Score=40.50 Aligned_cols=59 Identities=17% Similarity=0.310 Sum_probs=29.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHh---cCC-CCC-hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003710 533 FVSLLSSCSISGMVDEGWNYFDSMRKD---YGI-VPG-IEHYGCIIDLLGRIGNLDQAKRFIEE 591 (801)
Q Consensus 533 ~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~-~p~-~~~~~~li~~~~~~g~~~eA~~~~~~ 591 (801)
+..+...+...|++++|+.+|+...+. +|- .|+ ..++..|..+|.+.|++++|++++++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444445555544444443321 110 111 44566666667777777777766654
No 229
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.71 Score=46.03 Aligned_cols=109 Identities=12% Similarity=0.167 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc---CCHHHHHHHHHHhHHhcCCCCC-hHH
Q 003710 494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSIS---GMVDEGWNYFDSMRKDYGIVPG-IEH 568 (801)
Q Consensus 494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~---g~~~~a~~~~~~m~~~~~~~p~-~~~ 568 (801)
|...|-.|...|..+|++..|..-|.+..+ +.|| ...+..+..++..+ ..-.++..+|+++.+ ..|+ +..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~---~D~~~ira 229 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA---LDPANIRA 229 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh---cCCccHHH
Confidence 556788888888888888888888888777 3443 44455555554433 235677778887763 4554 666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CCCcchHHHHHHH
Q 003710 569 YGCIIDLLGRIGNLDQAKRFIEEMPS-APTARIWGALLTA 607 (801)
Q Consensus 569 ~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~ 607 (801)
...|...+...|++.+|...++.|.. -|....|..++..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 77777777778888888877777764 3555566665543
No 230
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.37 E-value=3.9 Score=39.48 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=26.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhCCCCCC--CHhhHHHHHHHHHhhcChhhHHHHHHHHHH
Q 003710 411 AAYVRNGQNREAMELFQDLWSEPLKP--DAMTFASILPAYAEIATLSDSMQIHSLITK 466 (801)
Q Consensus 411 ~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 466 (801)
..+.+.|++.+|.+.|+++...-... -....-.+..++.+.|+++.|...++.+++
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33445566666666666665431100 011223344555556666666666665554
No 231
>PRK11906 transcriptional regulator; Provisional
Probab=94.33 E-value=0.58 Score=49.72 Aligned_cols=62 Identities=6% Similarity=-0.016 Sum_probs=34.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 003710 597 TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIM 658 (801)
Q Consensus 597 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 658 (801)
|+.....+..+....|+.+.|...+++++.++|+.+.++...+.+..-+|+.++|.+.+++.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444455555666666666666666666666666666666666666666555553
No 232
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.29 E-value=2 Score=41.54 Aligned_cols=140 Identities=14% Similarity=0.139 Sum_probs=78.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 003710 500 VIIMAYAIHGLGKISIQLFSEMREKGIKPN----ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDL 575 (801)
Q Consensus 500 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 575 (801)
.....+.+.|++.+|++.|+++...- |+ ......+..++.+.|++++|...++.+.+.+.-.|.. .+.....+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g 86 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLG 86 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHH
Confidence 34556678899999999999988742 32 2345667778888999999999999988876555542 12222211
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc-----------------hhHHHH
Q 003710 576 LGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNT-----------------GCYVLL 638 (801)
Q Consensus 576 ~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-----------------~~~~~l 638 (801)
.+.-....... .. .+..+....|...++.+++.-|++. ..-..+
T Consensus 87 ~~~~~~~~~~~------~~-------------~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 87 LSYYKQIPGIL------RS-------------DRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp HHHHHHHHHHH-------T-------------T---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCccch------hc-------------ccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111010000 00 1111223344444444444444432 123457
Q ss_pred HHHHHHcCCchHHHHHHHHHHHC
Q 003710 639 SNMYAEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 639 ~~~y~~~g~~~~a~~~~~~m~~~ 661 (801)
+..|.+.|+|..|..-++.+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH
Confidence 88999999999999999988764
No 233
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.28 E-value=0.55 Score=47.53 Aligned_cols=162 Identities=9% Similarity=0.027 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCC--hH
Q 003710 496 VSWNVIIMAYAIHGLGKISIQLFSEMRE-KGIKPNE---STFVSLLSSCSISGMVDEGWNYFDSMRKDYGI--VPG--IE 567 (801)
Q Consensus 496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~--~~ 567 (801)
.+|-.+..++-+.-++.+++.+-+.-.. .|..|.. ....++..|....+.++++++.|+...+--.- .|. ..
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3455555666555555565555443332 2333321 22333455566666788888888876542111 121 56
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCCCch
Q 003710 568 HYGCIIDLLGRIGNLDQAKRFIEEM-------PSAPT-----ARIWGALLTASRKNNDIVSAEFAARHVLSS--AQDNTG 633 (801)
Q Consensus 568 ~~~~li~~~~~~g~~~eA~~~~~~m-------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~ 633 (801)
+|..|...|++..++++|.-+..+. ..+.- ..+.-.+.-+++..|.+..|.+..+++.++ .-.|..
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 7888999999999888876554433 21111 112223445678888888888877777653 233333
Q ss_pred ----hHHHHHHHHHHcCCchHHHHHHHH
Q 003710 634 ----CYVLLSNMYAEAGRWEDVEQIKAI 657 (801)
Q Consensus 634 ----~~~~l~~~y~~~g~~~~a~~~~~~ 657 (801)
....++++|...|+.|.|..-++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 445788999999988777665543
No 234
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.26 E-value=4.4 Score=37.25 Aligned_cols=123 Identities=14% Similarity=0.137 Sum_probs=77.0
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003710 459 QIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLS 538 (801)
Q Consensus 459 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 538 (801)
+....+.+.+++++..++..+|+.+.+.|+ ...+.+++..++-||.......+-
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~--------------------------~~~L~qllq~~Vi~DSk~lA~~LL 68 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQ--------------------------FSQLHQLLQYHVIPDSKPLACQLL 68 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--------------------------HHHHHHHHhhcccCCcHHHHHHHH
Confidence 344555577888888888888888887776 334567778888888887766664
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH
Q 003710 539 SCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIV 615 (801)
Q Consensus 539 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 615 (801)
.... ....+.++=-.|.++. ...+..+++.+...|++-+|+++..+... -+...-.-++.+-...+|..
T Consensus 69 s~~~--~~~~~~Ql~lDMLkRL-----~~~~~~iievLL~~g~vl~ALr~ar~~~~-~~~~~~~~fLeAA~~~~D~~ 137 (167)
T PF07035_consen 69 SLGN--QYPPAYQLGLDMLKRL-----GTAYEEIIEVLLSKGQVLEALRYARQYHK-VDSVPARKFLEAAANSNDDQ 137 (167)
T ss_pred HhHc--cChHHHHHHHHHHHHh-----hhhHHHHHHHHHhCCCHHHHHHHHHHcCC-cccCCHHHHHHHHHHcCCHH
Confidence 4333 3333333333333321 11567788899999999999999987542 22223344555555555443
No 235
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.19 E-value=0.48 Score=42.98 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH----HhcCCCCChHHH
Q 003710 497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMR----KDYGIVPGIEHY 569 (801)
Q Consensus 497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~~ 569 (801)
....++..+...|++++|+++.+.+.... +-|...+..++.++...|+..+|.++|+.+. +++|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45567777888999999999999999842 3356689999999999999999999998764 356888886543
No 236
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.94 E-value=3.1 Score=44.57 Aligned_cols=99 Identities=14% Similarity=0.175 Sum_probs=55.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCc--chHHHHHHHHHh
Q 003710 535 SLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTA--RIWGALLTASRK 610 (801)
Q Consensus 535 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~--~~~~~ll~~~~~ 610 (801)
.|..++-+.|+.+||.+.|++|.+++...-...+...|+..|...+++.++..++.+-.. -|.. ..|++.+-..+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 344455566777777777777765432222244555677777777777777777766542 1332 334443333333
Q ss_pred cCCH---------------HHHHHHHHHHHccCCCCch
Q 003710 611 NNDI---------------VSAEFAARHVLSSAQDNTG 633 (801)
Q Consensus 611 ~g~~---------------~~a~~~~~~~~~~~p~~~~ 633 (801)
.+|. ..|.++..++++.+|..+.
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 3331 2355677888888875543
No 237
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.83 E-value=0.46 Score=48.82 Aligned_cols=260 Identities=11% Similarity=0.090 Sum_probs=128.2
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCChh----hHHHHHHHHhccCChHHHHHHHHHHHH--h--CCC-CchhHHHHHH
Q 003710 309 GGYVVNAHFLESFSCLRKMLEDDNLNPDCI----TIINLLPSCTKLGALLEGKSIHGYAIR--K--GFL-PNVALETALI 379 (801)
Q Consensus 309 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~--~--g~~-~~~~~~~~Li 379 (801)
.-+++.|+....+.+|+...+. |. -|.. .|..+-+++.-.+++++|.+.|..=+. . |-. -.......|-
T Consensus 25 ERLck~gdcraGv~ff~aA~qv-GT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQV-GT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHh-cc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 3478899999999999988876 43 2333 355566677777888888888754321 1 111 1122222333
Q ss_pred HHHHccCChHHHHHHHhc-C------CCC--CHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHh
Q 003710 380 DMYAGSGALKMTEKLFGS-M------IEK--NLVSWNAMIAAYVRNGQ--------------------NREAMELFQDLW 430 (801)
Q Consensus 380 ~~y~k~g~~~~A~~~f~~-~------~~~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~ 430 (801)
+.+--.|.+++|.-.-.+ + -++ ....+-.+...|...|+ ++.|.++|.+=+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 344445666666543322 1 000 01112223333333221 122333332211
Q ss_pred C----CCCC-CCHhhHHHHHHHHHhhcChhhHHHHHHHHH----HhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHH
Q 003710 431 S----EPLK-PDAMTFASILPAYAEIATLSDSMQIHSLIT----KLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVI 501 (801)
Q Consensus 431 ~----~g~~-pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~----~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~l 501 (801)
+ .|-. .-...|..|-..|.-.|+++.+...|+.-. +.|- .|..-..+..+
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---------------------rAaeRRA~sNl 241 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---------------------RAAERRAHSNL 241 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---------------------HHHHHHhhccc
Confidence 1 1100 011223333333444556666665555322 1121 11123345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHH---hc-CCCCChHHHHHH
Q 003710 502 IMAYAIHGLGKISIQLFSEMREK----GIK-PNESTFVSLLSSCSISGMVDEGWNYFDSMRK---DY-GIVPGIEHYGCI 572 (801)
Q Consensus 502 i~~~~~~g~~~~A~~l~~~m~~~----g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~-~~~p~~~~~~~l 572 (801)
..++.-.|+++.|++.|+.-... |-+ .......+|.++|.-...+++|+.++..-.. +. ...-....|.+|
T Consensus 242 gN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSL 321 (639)
T KOG1130|consen 242 GNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSL 321 (639)
T ss_pred chhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 66666677777777776654322 211 1233455666666666677777777654221 11 111225566677
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 003710 573 IDLLGRIGNLDQAKRFIEE 591 (801)
Q Consensus 573 i~~~~~~g~~~eA~~~~~~ 591 (801)
..+|...|..++|+.+.+.
T Consensus 322 gna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 322 GNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHhhhhHHHHHHHHHH
Confidence 7777777777777766554
No 238
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.66 E-value=1.6 Score=42.73 Aligned_cols=81 Identities=11% Similarity=0.194 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003710 459 QIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIH-GLGKISIQLFSEMREKGIKPNESTFVSLL 537 (801)
Q Consensus 459 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 537 (801)
..++.|.+.|+.-|..+|+.|++.+-|..-+.. |..-..+..- .+-+-+++++++|...|+.||..+-..|+
T Consensus 93 ~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~-------nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 93 TALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ-------NVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhCcccccccH-------HHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 344556666666666666666665554322211 1111111111 12234688999999999999999988899
Q ss_pred HHHhccCCH
Q 003710 538 SSCSISGMV 546 (801)
Q Consensus 538 ~a~~~~g~~ 546 (801)
+++.+.+-.
T Consensus 166 n~FGr~~~p 174 (406)
T KOG3941|consen 166 NAFGRWNFP 174 (406)
T ss_pred HHhcccccc
Confidence 998887653
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.61 E-value=2.1 Score=46.64 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=55.3
Q ss_pred HHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHH
Q 003710 380 DMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQ 459 (801)
Q Consensus 380 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 459 (801)
+...++|+++.|.++-++.. +...|..|.....++|+.+-|.+.|++..+ |..|+-.+.-.|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 34457788888888876655 556888888888888888888888888753 5566666777777777666
Q ss_pred HHHHHHHhC
Q 003710 460 IHSLITKLG 468 (801)
Q Consensus 460 i~~~~~~~g 468 (801)
+.+.....|
T Consensus 395 l~~~a~~~~ 403 (443)
T PF04053_consen 395 LAKIAEERG 403 (443)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcc
Confidence 666666554
No 240
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.59 E-value=0.54 Score=41.12 Aligned_cols=47 Identities=11% Similarity=-0.011 Sum_probs=23.5
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHH
Q 003710 299 RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLP 345 (801)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 345 (801)
|+.....+++.+|+.+|++..|+++.+...+..+++.+..++..|+.
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34444455555555555555555555555444444444444544444
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.52 E-value=3.3 Score=45.79 Aligned_cols=160 Identities=16% Similarity=0.101 Sum_probs=106.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChH
Q 003710 498 WNVIIMAYAIHGLGKISIQLFSEMREKG-IKPNE-----STFVSLLSSCSI----SGMVDEGWNYFDSMRKDYGIVPGIE 567 (801)
Q Consensus 498 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~ 567 (801)
...+++...-.|+-+.+++++.+-.+.+ +.-.. .+|..++..+.. ....+.+.++++.+.+.| |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 3445666666788888888888765532 22111 123333333332 457888999999998664 7755
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHhCCC-C-----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHH-HHH
Q 003710 568 HYGC-IIDLLGRIGNLDQAKRFIEEMPS-A-----PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYV-LLS 639 (801)
Q Consensus 568 ~~~~-li~~~~~~g~~~eA~~~~~~m~~-~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~ 639 (801)
.|.. -...+...|++++|.+.+++... + -....+--+...+....++++|...+..+.+.+......|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 5543 34667788999999999997543 1 11222333455567788999999999999988777666665 456
Q ss_pred HHHHHcCCc-------hHHHHHHHHHHH
Q 003710 640 NMYAEAGRW-------EDVEQIKAIMEK 660 (801)
Q Consensus 640 ~~y~~~g~~-------~~a~~~~~~m~~ 660 (801)
-.|...|+. ++|.+++.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 677888888 788888877654
No 242
>PRK11906 transcriptional regulator; Provisional
Probab=93.34 E-value=2.5 Score=45.07 Aligned_cols=141 Identities=11% Similarity=0.111 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHH-HCCCCCCHHH-HHHHHHHHh---------ccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHh
Q 003710 511 GKISIQLFSEMR-EKGIKPNEST-FVSLLSSCS---------ISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGR 578 (801)
Q Consensus 511 ~~~A~~l~~~m~-~~g~~p~~~t-~~~ll~a~~---------~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~ 578 (801)
.+.|+.+|.+.. .+.+.|+-.. |..+-.++. ......+|.++-+... .+.|+ ......+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHh
Confidence 456788999988 2236777543 333222211 1234556666666555 45554 7777788888888
Q ss_pred cCCHHHHHHHHHhCCC-CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHH--HHHHHHHHcCCchHHHHH
Q 003710 579 IGNLDQAKRFIEEMPS-APT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYV--LLSNMYAEAGRWEDVEQI 654 (801)
Q Consensus 579 ~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~y~~~g~~~~a~~~ 654 (801)
.|+++.|..+|++... .|| +..|......+.-.|+.++|.+..++.++++|.-..+-+ ..+++|+..+ .++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 8999999999998765 565 466777777788899999999999999999998655433 4455676654 5666665
Q ss_pred H
Q 003710 655 K 655 (801)
Q Consensus 655 ~ 655 (801)
+
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 5
No 243
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.18 E-value=0.42 Score=46.62 Aligned_cols=96 Identities=14% Similarity=0.040 Sum_probs=66.1
Q ss_pred HHHhhCC--CCChhhHHHHHHHHHcC-----CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCC-------------
Q 003710 89 YLFEKMS--YLDTYIWNVVIRGFVDN-----GLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLL------------- 148 (801)
Q Consensus 89 ~~f~~~~--~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------------- 148 (801)
..|...+ ++|-.+|-.++..+... +..+-....+..|.+.|+.-|..+|+.||+.+-+-.
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444444 45666666666665532 455556667788888888888888988887765422
Q ss_pred ---ChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCC
Q 003710 149 ---YLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGC 184 (801)
Q Consensus 149 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 184 (801)
...-+..++++|...|+.||..+-..|++++.+.+-
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234467788888888888888888888888776654
No 244
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.10 E-value=5.1 Score=34.72 Aligned_cols=135 Identities=13% Similarity=0.201 Sum_probs=72.3
Q ss_pred HcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHH---HHHHHHHHHhcCCccc
Q 003710 415 RNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYI---SNSIVYMYAKCGDLQT 491 (801)
Q Consensus 415 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~---~~~li~~y~~~g~~~~ 491 (801)
-.|..++..++..+.... .+..-++.++--....-+-+...++++.+ |-.-|... ...++..|.+.|...+
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~~se 87 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNKLSE 87 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT---H
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcchHH
Confidence 346666677777766542 23344455444333333333333333333 22222222 1345666666665544
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 003710 492 ARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGI 562 (801)
Q Consensus 492 A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 562 (801)
- ....+......|+-++-.+++.++... -+|++.....+..||.+.|+..++.+++....+. |+
T Consensus 88 ~-----vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 88 Y-----VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp H-----HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred H-----HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3 344567777888888888888887652 3677777888888888888888888888887764 43
No 245
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.03 E-value=20 Score=40.81 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHH
Q 003710 271 MVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLES 320 (801)
Q Consensus 271 ~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A 320 (801)
.+....|+.+.-.|++++|..+.-.|...+..-|.-.+.-+...++....
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 35556666677777777777777777776777776666666666655443
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=3.9 Score=40.79 Aligned_cols=117 Identities=14% Similarity=0.149 Sum_probs=86.7
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHH------HHHHHHh
Q 003710 538 SSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGA------LLTASRK 610 (801)
Q Consensus 538 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~------ll~~~~~ 610 (801)
......|+..++...|+..... .|. ...-..|+.+|...|+.++|..++..+|.+-...-|.. ++.-...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3566789999999999988753 333 67778899999999999999999999987533333333 3333333
Q ss_pred cCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710 611 NNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 611 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 661 (801)
.++... ++.-+..+|+|...-..|+..|-..|+.++|.+.+=.+..+
T Consensus 219 ~~~~~~----l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 219 TPEIQD----LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCCHHH----HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333332 33445679999999999999999999999999977666554
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.93 E-value=9.3 Score=36.86 Aligned_cols=156 Identities=17% Similarity=0.108 Sum_probs=87.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHH
Q 003710 502 IMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLS-SCSISGMVDEGWNYFDSMRKDYGIVP----GIEHYGCIIDLL 576 (801)
Q Consensus 502 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~ 576 (801)
...+...+....+++.+.........+. ........ .+...|+++++...+..... ..| ....+......+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 177 (291)
T COG0457 102 GLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALL 177 (291)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHH
Confidence 3334444445555666665555322221 11111122 55666666666666666532 222 233334444445
Q ss_pred HhcCCHHHHHHHHHhCCC-CCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHH
Q 003710 577 GRIGNLDQAKRFIEEMPS-APT--ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQ 653 (801)
Q Consensus 577 ~~~g~~~eA~~~~~~m~~-~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 653 (801)
...++.++|...+.+... .++ ...+..+...+...++.+.+...+...++..|.....+..+...+...|.++++..
T Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (291)
T COG0457 178 EALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALE 257 (291)
T ss_pred HHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHH
Confidence 566677777766665543 222 45566666666777777777777777777777655566666666666666777777
Q ss_pred HHHHHHHC
Q 003710 654 IKAIMEKE 661 (801)
Q Consensus 654 ~~~~m~~~ 661 (801)
.+......
T Consensus 258 ~~~~~~~~ 265 (291)
T COG0457 258 ALEKALEL 265 (291)
T ss_pred HHHHHHHh
Confidence 76666543
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.93 E-value=1.7 Score=38.56 Aligned_cols=57 Identities=19% Similarity=0.157 Sum_probs=36.1
Q ss_pred HhcCCHHHHHHHHHhCCCC-C----CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCch
Q 003710 577 GRIGNLDQAKRFIEEMPSA-P----TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTG 633 (801)
Q Consensus 577 ~~~g~~~eA~~~~~~m~~~-p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 633 (801)
.+.|++++|.+.|+.+... | ....-..|+.++.+.|+++.|...+++.++++|.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3455566666555554321 1 1233445667777888888888888888888887654
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.60 E-value=0.92 Score=44.67 Aligned_cols=87 Identities=24% Similarity=0.220 Sum_probs=58.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcC
Q 003710 506 AIHGLGKISIQLFSEMREKGIKPNE----STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIG 580 (801)
Q Consensus 506 ~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 580 (801)
.+.|++.+|...|...++.. |+. ..+.-|..++...|++++|..+|..+.++|+-.|. ++.+--|.....+.|
T Consensus 152 ~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 34566777788888777742 321 23444677777788888888888887777766665 466666667777777
Q ss_pred CHHHHHHHHHhCCC
Q 003710 581 NLDQAKRFIEEMPS 594 (801)
Q Consensus 581 ~~~eA~~~~~~m~~ 594 (801)
+.++|...+++...
T Consensus 230 ~~d~A~atl~qv~k 243 (262)
T COG1729 230 NTDEACATLQQVIK 243 (262)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777666666543
No 250
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.59 E-value=1.2 Score=42.02 Aligned_cols=153 Identities=22% Similarity=0.318 Sum_probs=89.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH--HHhcCC
Q 003710 505 YAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDL--LGRIGN 581 (801)
Q Consensus 505 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~ 581 (801)
|-..|-..-|.-=|.+... +.|+.. .|+-|.--+...|+++.|.+.|+... .+.|. ..|..+-.+ +.-.|+
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~---ELDp~-y~Ya~lNRgi~~YY~gR 148 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL---ELDPT-YNYAHLNRGIALYYGGR 148 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh---ccCCc-chHHHhccceeeeecCc
Confidence 4455555555555666555 778755 57777777888999999999999876 45564 223333222 223577
Q ss_pred HHHHHH----HHHhCCCCCCcchHHHHHHH--------------HHhcCCHHHH-------------HHHHHHHHccCCC
Q 003710 582 LDQAKR----FIEEMPSAPTARIWGALLTA--------------SRKNNDIVSA-------------EFAARHVLSSAQD 630 (801)
Q Consensus 582 ~~eA~~----~~~~m~~~p~~~~~~~ll~~--------------~~~~g~~~~a-------------~~~~~~~~~~~p~ 630 (801)
++-|.+ +++.=+..|-...|.-|... +..+.+-..+ +.+++++.+...+
T Consensus 149 ~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~ 228 (297)
T COG4785 149 YKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATD 228 (297)
T ss_pred hHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccc
Confidence 766654 44444444544455433321 1111111111 1223333322222
Q ss_pred C-------chhHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 003710 631 N-------TGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGL 663 (801)
Q Consensus 631 ~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 663 (801)
+ ..+|.-|+.-|-..|..++|..+|+.....++
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 2 45788999999999999999999998766443
No 251
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.42 E-value=12 Score=36.79 Aligned_cols=144 Identities=13% Similarity=0.126 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-C-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 003710 494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGI-K-PNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGC 571 (801)
Q Consensus 494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 571 (801)
.+..|-.=+..-.+.|++++|.+.|+.+..+-. . -...+...++-+..+.+++++|....++..+.|+-.|+.. |..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~ 111 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAY 111 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHH
Confidence 344555556666778888888888888876421 1 1234566677777888888888888888887776666632 333
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-----------------ch
Q 003710 572 IIDLLGRIGNLDQAKRFIEEMPS-APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDN-----------------TG 633 (801)
Q Consensus 572 li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------------~~ 633 (801)
.+.++.. +..... ..|. .-...|...++.+++.-|++ .+
T Consensus 112 YlkgLs~----------~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~ 168 (254)
T COG4105 112 YLKGLSY----------FFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAG 168 (254)
T ss_pred HHHHHHH----------hccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHH
Confidence 3333331 111110 0000 00112333333334433432 22
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710 634 CYVLLSNMYAEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 634 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 661 (801)
.=...++.|.+.|.|..|..-++.|.+.
T Consensus 169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 169 HEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 2347789999999999999999999875
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.40 E-value=5.8 Score=35.49 Aligned_cols=85 Identities=13% Similarity=0.004 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChh
Q 003710 138 PFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGV 217 (801)
Q Consensus 138 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~ 217 (801)
..++..+...+........++.+++.+ ..+...+|.++..|++... .+....++. ..+......+++.|.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 344555555555556666666666555 2455566667777766432 233333331 123333444555555555555
Q ss_pred hHHHHHHHH
Q 003710 218 SSLVFFKEM 226 (801)
Q Consensus 218 ~A~~l~~~m 226 (801)
++.-++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 555555554
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.21 E-value=1.9 Score=46.97 Aligned_cols=133 Identities=18% Similarity=0.240 Sum_probs=87.2
Q ss_pred HHHHcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 003710 504 AYAIHGLGKISIQLFSE-MREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNL 582 (801)
Q Consensus 504 ~~~~~g~~~~A~~l~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 582 (801)
.....|+++++.++.+. -.-..+ | ..-...++.-+-+.|..+.|+++-..-.. =-++..+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence 34456777777666641 111112 2 33466777777888999999887544332 23566789999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710 583 DQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG 662 (801)
Q Consensus 583 ~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 662 (801)
+.|.++.++.. +...|..|......+||++.|++.+++. .-+..|.-+|...|+.+.-.++-+....+|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99998887654 6779999999999999999999998874 346678888899999888877777776655
No 254
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.11 E-value=25 Score=39.95 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=47.6
Q ss_pred hhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 003710 169 VYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISI 247 (801)
Q Consensus 169 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 247 (801)
..++...|+.|.-.|++++|-.+.-.|...+..-|---+.-+...++......+ +....-+.+...|-.+|..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 346777777787888888888887777777777777777777776665443322 2221122344456666665544
No 255
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.86 E-value=4.7 Score=36.53 Aligned_cols=91 Identities=26% Similarity=0.111 Sum_probs=62.2
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCCH
Q 003710 537 LSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPSA-PTARIWGALLTASRKNNDI 614 (801)
Q Consensus 537 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p~~~~~~~ll~~~~~~g~~ 614 (801)
+..-.+.++.+++..++..+. -+.|. .++-..-...+.+.|+|.+|..+++++... |....-.+|+..|.....-
T Consensus 17 ~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 344456778899999998886 56777 555555667788999999999999998754 5555566777777655433
Q ss_pred HHHHHHHHHHHccCCC
Q 003710 615 VSAEFAARHVLSSAQD 630 (801)
Q Consensus 615 ~~a~~~~~~~~~~~p~ 630 (801)
..=...++++++..++
T Consensus 94 ~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 94 PSWRRYADEVLESGAD 109 (160)
T ss_pred hHHHHHHHHHHhcCCC
Confidence 3334445556665553
No 256
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.07 E-value=0.41 Score=30.39 Aligned_cols=32 Identities=19% Similarity=0.046 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 003710 600 IWGALLTASRKNNDIVSAEFAARHVLSSAQDN 631 (801)
Q Consensus 600 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 631 (801)
.|..+...+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 34555566666666666666666666666653
No 257
>PRK15331 chaperone protein SicA; Provisional
Probab=90.99 E-value=7.3 Score=35.48 Aligned_cols=86 Identities=7% Similarity=-0.038 Sum_probs=42.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH
Q 003710 505 YAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLD 583 (801)
Q Consensus 505 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 583 (801)
+.+.|++++|..+|+-+... .|... -+..|..+|-..+.+++|...|.....- . .-|...+-.+..+|...|+.+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHH
Confidence 34556666666666655542 22222 2333333444456666666666554321 1 112333334455556666666
Q ss_pred HHHHHHHhCCC
Q 003710 584 QAKRFIEEMPS 594 (801)
Q Consensus 584 eA~~~~~~m~~ 594 (801)
+|.+.|+....
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 66665555443
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.68 E-value=2 Score=47.43 Aligned_cols=143 Identities=20% Similarity=0.223 Sum_probs=101.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHH----hcCCHHHH
Q 003710 515 IQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGI-----EHYGCIIDLLG----RIGNLDQA 585 (801)
Q Consensus 515 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~----~~g~~~eA 585 (801)
.-+|+-++.. ++| .+..+++...-.|+-+.|++.+....+..++.-.. -.|..++..+. .....++|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 4455656552 333 45556777777899999999998876644443322 22333333332 25678999
Q ss_pred HHHHHhCCCC-CCcchHHHHHH-HHHhcCCHHHHHHHHHHHHccCC----CCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 003710 586 KRFIEEMPSA-PTARIWGALLT-ASRKNNDIVSAEFAARHVLSSAQ----DNTGCYVLLSNMYAEAGRWEDVEQIKAIME 659 (801)
Q Consensus 586 ~~~~~~m~~~-p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 659 (801)
.++++.+... |+...|.-.-+ .++..|+.+.|.+.++++++... -..-.+.-+++.+.-.++|++|.+.+..+.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 9999999863 89888875554 46789999999999998774322 134567789999999999999999999998
Q ss_pred HC
Q 003710 660 KE 661 (801)
Q Consensus 660 ~~ 661 (801)
+.
T Consensus 333 ~~ 334 (468)
T PF10300_consen 333 KE 334 (468)
T ss_pred hc
Confidence 74
No 259
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.61 E-value=0.35 Score=30.82 Aligned_cols=31 Identities=19% Similarity=-0.025 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 003710 600 IWGALLTASRKNNDIVSAEFAARHVLSSAQD 630 (801)
Q Consensus 600 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 630 (801)
+|..+...+...|+.++|+..++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4666666677777777777777777777765
No 260
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.57 E-value=12 Score=42.87 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=22.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHH
Q 003710 410 IAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAY 448 (801)
Q Consensus 410 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 448 (801)
...+.-.|+++.|++++-+ ..+...|.+.+...|..+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~ 301 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY 301 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc
Confidence 3455667999999998887 334556667666655544
No 261
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.51 E-value=8.9 Score=39.30 Aligned_cols=141 Identities=16% Similarity=0.216 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHh--h----cChhhHHHHHHHHHHhCC---CCchHHHHHHHHHHHhcCCc
Q 003710 419 NREAMELFQDLWSEPLKPDAMTFASILPAYAE--I----ATLSDSMQIHSLITKLGL---VSNIYISNSIVYMYAKCGDL 489 (801)
Q Consensus 419 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~----~~~~~a~~i~~~~~~~g~---~~~~~~~~~li~~y~~~g~~ 489 (801)
+++.+.+++.|.+.|++-+..+|.+.+..... . .....+..+|+.|.+... .++-.++.+|+.+ ...++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34567788889999999888887764433333 1 235678899999996532 1333444444332 22222
Q ss_pred cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhc-cCC--HHHHHHHHHHhHHhcCCCCC
Q 003710 490 QTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSI-SGM--VDEGWNYFDSMRKDYGIVPG 565 (801)
Q Consensus 490 ~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~-~g~--~~~a~~~~~~m~~~~~~~p~ 565 (801)
+.- .+.+..+|+.+.+.|+..+.. -+.+-+-++.. ... +..+.++++.+.+. |+++.
T Consensus 156 e~l------------------~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik 216 (297)
T PF13170_consen 156 EEL------------------AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIK 216 (297)
T ss_pred HHH------------------HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccc
Confidence 222 355678889999888876544 34443333333 222 45788889999876 99998
Q ss_pred hHHHHHHHHHHHhcC
Q 003710 566 IEHYGCIIDLLGRIG 580 (801)
Q Consensus 566 ~~~~~~li~~~~~~g 580 (801)
..+|..+.-+-.-.+
T Consensus 217 ~~~yp~lGlLall~~ 231 (297)
T PF13170_consen 217 YMHYPTLGLLALLED 231 (297)
T ss_pred cccccHHHHHHhcCC
Confidence 888887655443333
No 262
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.44 E-value=25 Score=42.05 Aligned_cols=256 Identities=13% Similarity=0.054 Sum_probs=125.5
Q ss_pred hHHHHHHHHHcCC--ChHHHHHHHhhCCC-CChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHH-HHHHHHh
Q 003710 70 TKTRALQELVSSG--SMESACYLFEKMSY-LDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYP-FVIKACA 145 (801)
Q Consensus 70 ~~~~l~~~~~~~g--~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~ 145 (801)
+...+|..|.+.+ .++.|+....+... +...+-...+..++- +-.+-.+|+.... .+-+. +++-+-.
T Consensus 792 ~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~---Lvdvn~lfn~ALg------tYDl~Lal~VAq~ 862 (1265)
T KOG1920|consen 792 FNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLF---LVDVNELFNSALG------TYDLDLALLVAQK 862 (1265)
T ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHh---hccHHHHHHhhhc------ccchHHHHHHHHH
Confidence 3338999999987 77888887777653 212222222222221 1222233333221 00111 1122223
Q ss_pred cCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHH
Q 003710 146 GLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKE 225 (801)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 225 (801)
...|+.+-.-+++.+.+.....-.+ .|+.| .+++++|+.-+.++. ...|+-.++---+.|.+.+|+.++
T Consensus 863 SqkDPkEyLP~L~el~~m~~~~rkF----~ID~~--L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly-- 931 (1265)
T KOG1920|consen 863 SQKDPKEYLPFLNELKKMETLLRKF----KIDDY--LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY-- 931 (1265)
T ss_pred hccChHHHHHHHHHHhhchhhhhhe----eHHHH--HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--
Confidence 3445555455554444321100001 12222 245666666655554 345666666667788888888774
Q ss_pred HHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHH
Q 003710 226 MQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWN 305 (801)
Q Consensus 226 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~ 305 (801)
+|+...+..+..+|+.. +.+.+ .++-..-+|.++|+.++|.+.+
T Consensus 932 ------~~~~e~~k~i~~~ya~h------------L~~~~------~~~~Aal~Ye~~GklekAl~a~------------ 975 (1265)
T KOG1920|consen 932 ------KPDSEKQKVIYEAYADH------------LREEL------MSDEAALMYERCGKLEKALKAY------------ 975 (1265)
T ss_pred ------ccCHHHHHHHHHHHHHH------------HHHhc------cccHHHHHHHHhccHHHHHHHH------------
Confidence 46666666665554321 11111 1222334577778888777654
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhh--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 003710 306 AMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCIT--IINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYA 383 (801)
Q Consensus 306 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 383 (801)
..+|+|.+|+.+-.+|... -|... --.|..-+...++.-+|-++..+.... ..-.+..|+
T Consensus 976 ------~~~~dWr~~l~~a~ql~~~----~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ 1037 (1265)
T KOG1920|consen 976 ------KECGDWREALSLAAQLSEG----KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLC 1037 (1265)
T ss_pred ------HHhccHHHHHHHHHhhcCC----HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHh
Confidence 4467788888777766321 22221 134444555555555555544333221 122344455
Q ss_pred ccCChHHHHHHHhcCC
Q 003710 384 GSGALKMTEKLFGSMI 399 (801)
Q Consensus 384 k~g~~~~A~~~f~~~~ 399 (801)
+...+++|.++-..-.
T Consensus 1038 ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1038 KAKEWEEALRVASKAK 1053 (1265)
T ss_pred hHhHHHHHHHHHHhcc
Confidence 5566666666554433
No 263
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.13 E-value=3.1 Score=41.04 Aligned_cols=101 Identities=15% Similarity=0.096 Sum_probs=57.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC-cchHHHHH
Q 003710 532 TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS----APT-ARIWGALL 605 (801)
Q Consensus 532 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~----~p~-~~~~~~ll 605 (801)
.|..-+. +.+.|++.+|...|....+.|.-.+- ...+-.|...+...|++++|...|..+.. .|- +...--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555444 44567799999999888876522211 33455567777777777777666655432 111 12333334
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCch
Q 003710 606 TASRKNNDIVSAEFAARHVLSSAQDNTG 633 (801)
Q Consensus 606 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 633 (801)
......|+.+.|...++++++.-|+.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 4455556666666666666666665443
No 264
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.96 E-value=29 Score=36.80 Aligned_cols=129 Identities=15% Similarity=0.182 Sum_probs=84.9
Q ss_pred HhhHHHHHHHHHhhcChhhHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHH
Q 003710 438 AMTFASILPAYAEIATLSDSMQIHSLITKLG-LVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQ 516 (801)
Q Consensus 438 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~ 516 (801)
...|...+++..+..-++.|+.+|..+.+.+ ..+++.++++++.-|+. |+..-|.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-----------------------~d~~ta~~ 453 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-----------------------GDRATAYN 453 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-----------------------CCcchHHH
Confidence 3456667777788888999999999999888 56778888888876653 33344466
Q ss_pred HHHHHHHCCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 003710 517 LFSEMREKGIKPNESTFV-SLLSSCSISGMVDEGWNYFDSMRKDYGIVPG--IEHYGCIIDLLGRIGNLDQAKRFIEEMP 593 (801)
Q Consensus 517 l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m~ 593 (801)
+|+--.. .-||...|. -.+.-+...++-+.|+.+|+....+ +..+ ...|..||+-=..-|++..|..+=++|.
T Consensus 454 ifelGl~--~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 454 IFELGLL--KFPDSTLYKEKYLLFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 6665433 245555443 3455556678888888888865542 2223 4567777776667777766665555543
No 265
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.62 E-value=45 Score=38.44 Aligned_cols=81 Identities=21% Similarity=0.192 Sum_probs=42.7
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHH
Q 003710 109 FVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECA 188 (801)
Q Consensus 109 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 188 (801)
+.+.|++++|...|-+-... +.| +.+++-+........-..+++.+.+.|+. +..--+.|+.+|.|.++.+.-
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHH
Confidence 33566666666665543311 122 23444444444444555556666666643 333345566667776666666
Q ss_pred HHhhccCC
Q 003710 189 ERMFDEMP 196 (801)
Q Consensus 189 ~~~f~~m~ 196 (801)
.+..+...
T Consensus 451 ~efI~~~~ 458 (933)
T KOG2114|consen 451 TEFISKCD 458 (933)
T ss_pred HHHHhcCC
Confidence 66555443
No 266
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.15 E-value=9.9 Score=33.79 Aligned_cols=19 Identities=5% Similarity=-0.076 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHccCCCCc
Q 003710 614 IVSAEFAARHVLSSAQDNT 632 (801)
Q Consensus 614 ~~~a~~~~~~~~~~~p~~~ 632 (801)
...|...++++++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 4567777778887777754
No 267
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.81 E-value=88 Score=40.77 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHhh-cCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCC-hhhHHHHHHHHhc
Q 003710 272 VQTSLVDMYGKCGVVDYAERLFNM-IFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPD-CITIINLLPSCTK 349 (801)
Q Consensus 272 ~~~~li~~y~~~g~~~~A~~lf~~-m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~~~~~ 349 (801)
.+-.+...|+.-+++|....+... ...++ ...-|-.....|++..|...|+.+.. ..|+ ..+++.++..-..
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q---~~p~~~~~~~g~l~sml~ 1495 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQ---KDPDKEKHHSGVLKSMLA 1495 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhc---CCCccccchhhHHHhhhc
Confidence 344455578888888777666652 33332 23345556677999999999999984 4566 5677777777666
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHH-HHHHHHccCChHHHHHHHhcCCCCCHHHHHHH
Q 003710 350 LGALLEGKSIHGYAIRKGFLPNVALETA-LIDMYAGSGALKMTEKLFGSMIEKNLVSWNAM 409 (801)
Q Consensus 350 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~-Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~l 409 (801)
.+.++......+..... ..+....+++ =+.+-.+.++++..+.... ..+..+|.+.
T Consensus 1496 ~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1496 IQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred ccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence 67666655533333222 1222222222 2344456666666665554 5556666654
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.77 E-value=0.84 Score=29.66 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHH
Q 003710 634 CYVLLSNMYAEAGRWEDVEQIKAIME 659 (801)
Q Consensus 634 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 659 (801)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788999999999999999998844
No 269
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=88.59 E-value=36 Score=35.97 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=29.5
Q ss_pred HHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003710 481 YMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREK 524 (801)
Q Consensus 481 ~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 524 (801)
..+++.|..+...|.-.+-++..++.-.|+.++|.+..++|...
T Consensus 291 ~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 291 SLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34455666655555555566777777778888888888888764
No 270
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.56 E-value=44 Score=36.99 Aligned_cols=139 Identities=16% Similarity=0.132 Sum_probs=92.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHH
Q 003710 507 IHGLGKISIQLFSEMREKGIK--PNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLD 583 (801)
Q Consensus 507 ~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 583 (801)
..|+.+-|-.++..-.+--++ |....+.+. -+-..|+.+.|..+++.+.+++ |+ +..-.--+....+.|..+
T Consensus 343 ~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~ 417 (577)
T KOG1258|consen 343 SSGDVSLANNVLARACKIHVKKTPIIHLLEAR--FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLE 417 (577)
T ss_pred HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH--HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchh
Confidence 335555555555544432222 222222222 2455789999999999998863 76 555555677788899999
Q ss_pred HHH---HHHHhCCC-CCCcchHHHHHHH-----HHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchH
Q 003710 584 QAK---RFIEEMPS-APTARIWGALLTA-----SRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWED 650 (801)
Q Consensus 584 eA~---~~~~~m~~-~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 650 (801)
.+. +++..... +-+..+...+.-- +...++.+.|..++.++.+..|++...|..++++....+...+
T Consensus 418 ~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e 493 (577)
T KOG1258|consen 418 DANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGRE 493 (577)
T ss_pred hhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchh
Confidence 888 66655432 3333333333322 3456789999999999999999999999999998888775443
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.45 E-value=11 Score=38.30 Aligned_cols=95 Identities=13% Similarity=0.017 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHH
Q 003710 494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFV----SLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEH 568 (801)
Q Consensus 494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~ 568 (801)
|..+|+--=.+|...|+-+.-...+++.... ..||...|. .+.-++...|-+++|++.-++.. .+.|. .-.
T Consensus 136 Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ral---qiN~~D~Wa 211 (491)
T KOG2610|consen 136 DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRAL---QINRFDCWA 211 (491)
T ss_pred hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhc---cCCCcchHH
Confidence 5555555555666666665555555555432 233332222 12223344566666666555443 23332 333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 003710 569 YGCIIDLLGRIGNLDQAKRFIEEM 592 (801)
Q Consensus 569 ~~~li~~~~~~g~~~eA~~~~~~m 592 (801)
-.++...+.-.|+..|+.++..+-
T Consensus 212 ~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 212 SHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHHHHHhcchhhhHHHHHHhc
Confidence 334455555566666666666554
No 272
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.14 E-value=19 Score=33.15 Aligned_cols=134 Identities=7% Similarity=0.100 Sum_probs=83.4
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHhcC-CChHHHHHHHhhcC
Q 003710 220 LVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMD-VMVQTSLVDMYGKC-GVVDYAERLFNMIF 297 (801)
Q Consensus 220 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~-~~~~~~li~~y~~~-g~~~~A~~lf~~m~ 297 (801)
++.++.+.+.|+.|+...+..++..+.+.|++..-.+ ++..++-+| ..+.-.|++.-.+. .-..-|...+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4566667778888888888888888888887654433 344444444 34444444332221 11233444444442
Q ss_pred CCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 003710 298 PRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRK 366 (801)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 366 (801)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..++......
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 24566778889999999999998875322 2233456677777777766666666666554
No 273
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.13 E-value=38 Score=35.75 Aligned_cols=148 Identities=7% Similarity=-0.031 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHH
Q 003710 494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKP---NESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG--IEH 568 (801)
Q Consensus 494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~ 568 (801)
...+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+.++|...++..... .+... ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44678888888899999999999888887744222 2233344455566678888888888777652 11111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCcchHHHHHHHHHh------cCCHHHHHHHHHHHHccCCCCchhHHHHHHH
Q 003710 569 YGCIIDLLGRIGNLDQAKRF-IEEMPSAPTARIWGALLTASRK------NNDIVSAEFAARHVLSSAQDNTGCYVLLSNM 641 (801)
Q Consensus 569 ~~~li~~~~~~g~~~eA~~~-~~~m~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 641 (801)
...+...+.. ..+..... ......+.-...+..+...+.. .++.+.+...++.+.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 0000000001122222222223 3777888889999999999887777777666
Q ss_pred HHH
Q 003710 642 YAE 644 (801)
Q Consensus 642 y~~ 644 (801)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 543
No 274
>PRK09687 putative lyase; Provisional
Probab=87.88 E-value=34 Score=34.87 Aligned_cols=76 Identities=12% Similarity=0.059 Sum_probs=41.7
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHH
Q 003710 369 LPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAY 448 (801)
Q Consensus 369 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 448 (801)
.++..+....+.++++.|+......+.+.+...++ .-..+.++...|.. +|+..+.++... .||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 34555566666666666664433334444333332 23456677777774 577777777653 34555555555544
Q ss_pred H
Q 003710 449 A 449 (801)
Q Consensus 449 ~ 449 (801)
.
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 3
No 275
>PRK09687 putative lyase; Provisional
Probab=87.52 E-value=36 Score=34.72 Aligned_cols=238 Identities=8% Similarity=-0.081 Sum_probs=127.1
Q ss_pred HhhCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcCCCh----hHHHHHHHHHHHhCCC
Q 003710 91 FEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYL----SEGEKVHGSLFKSGLN 166 (801)
Q Consensus 91 f~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~g~~ 166 (801)
++.+..+|.......+..+...|. ++++..+..+.+. +|...=...+.+++..|+. ..+..++..+... .
T Consensus 29 ~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D 102 (280)
T PRK09687 29 FRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--D 102 (280)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--C
Confidence 333445555555556666665553 3344444444432 3444444455555555543 2344444444222 4
Q ss_pred CchhhHhHHHHHHHhcCCc-----hHHHHhhcc-CCCCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHH
Q 003710 167 SDVYVCNSLIVMYMKLGCV-----ECAERMFDE-MPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLIS 240 (801)
Q Consensus 167 ~~~~~~~~li~~y~~~g~~-----~~A~~~f~~-m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 240 (801)
++..+-...+.+++..+.- ..+...+.. +..++...--..+.++.+.|+ ++++..+-.+... +|...-..
T Consensus 103 ~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~ 178 (280)
T PRK09687 103 KSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNW 178 (280)
T ss_pred CCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHH
Confidence 5666666666666655421 223333322 223455555566677777665 4666766666642 45455555
Q ss_pred HHHHHhccC-ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhH
Q 003710 241 ALGAISIEG-CLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLE 319 (801)
Q Consensus 241 ll~a~~~~~-~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~ 319 (801)
.+.++...+ +...+...+..++ -.+|..+-...+.++++.|+..-...+.+.+..++ ..-..+.++.+.|.. +
T Consensus 179 A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 179 AAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-h
Confidence 555555542 2334444444444 35677778888888888888544444444444433 234566777777774 6
Q ss_pred HHHHHHHHHhCCCCCCChhhHHHHHHHH
Q 003710 320 SFSCLRKMLEDDNLNPDCITIINLLPSC 347 (801)
Q Consensus 320 A~~l~~~m~~~~g~~pd~~t~~~ll~~~ 347 (801)
|+..+..+... .||...-...+.+|
T Consensus 253 a~p~L~~l~~~---~~d~~v~~~a~~a~ 277 (280)
T PRK09687 253 LLPVLDTLLYK---FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHHhh---CCChhHHHHHHHHH
Confidence 77777777653 34555554444444
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.50 E-value=29 Score=33.74 Aligned_cols=78 Identities=13% Similarity=0.210 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003710 405 SWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYA 484 (801)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 484 (801)
.|.--..+|-...++++|...+.+..+ +..-|..-|. ..+..+.+..+..++.+.. --+..|+--..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 345555667777777777776666542 1111111111 1223344444444444321 22334555666777
Q ss_pred hcCCcccc
Q 003710 485 KCGDLQTA 492 (801)
Q Consensus 485 ~~g~~~~A 492 (801)
.+|.++.|
T Consensus 103 E~GspdtA 110 (308)
T KOG1585|consen 103 ECGSPDTA 110 (308)
T ss_pred HhCCcchH
Confidence 77777766
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.38 E-value=1.3 Score=28.67 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003710 497 SWNVIIMAYAIHGLGKISIQLFSEMR 522 (801)
Q Consensus 497 ~~~~li~~~~~~g~~~~A~~l~~~m~ 522 (801)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777777888888888888887744
No 278
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.35 E-value=7.5 Score=43.53 Aligned_cols=183 Identities=19% Similarity=0.253 Sum_probs=107.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHh----------hHHHHHHHHHhhcChhhHHHHHHHHHHh-C-CCCch
Q 003710 406 WNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAM----------TFASILPAYAEIATLSDSMQIHSLITKL-G-LVSNI 473 (801)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----------t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g-~~~~~ 473 (801)
-..++-.|-...+++..+++.+.+.. -||.. .|.-.|+-=-+-|+-++|..+.--+++. | +.||
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD- 279 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD- 279 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc-
Confidence 33455556666667777777776654 23321 2222333333456666777665555532 2 3343
Q ss_pred HHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCCHHHHH
Q 003710 474 YISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNEST---FVSLLSSCSISGMVDEGW 550 (801)
Q Consensus 474 ~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~ 550 (801)
|||-||++-+-. -+-+.|...+..+.|++.|++.-+ +.|+... +..|+.+-.+. ++...
T Consensus 280 --------m~Cl~GRIYKDm------F~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~--Fens~ 341 (1226)
T KOG4279|consen 280 --------MYCLCGRIYKDM------FIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH--FENSL 341 (1226)
T ss_pred --------eeeeechhhhhh------hhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh--ccchH
Confidence 567777654431 122345555667788999998877 6787553 55555443221 11111
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 003710 551 NYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQD 630 (801)
Q Consensus 551 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 630 (801)
+ |+. .-..|-.+++|.|.++.-.++++- ...+.+..-.+|...|.++++++.++.|+
T Consensus 342 E----lq~---------IgmkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 342 E----LQQ---------IGMKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred H----HHH---------HHHHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 1 111 112355678899999988888765 23455666778999999999999999998
Q ss_pred Cch
Q 003710 631 NTG 633 (801)
Q Consensus 631 ~~~ 633 (801)
.-.
T Consensus 399 ~WY 401 (1226)
T KOG4279|consen 399 VWY 401 (1226)
T ss_pred eeh
Confidence 643
No 279
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.78 E-value=1.6 Score=27.73 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003710 496 VSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN 529 (801)
Q Consensus 496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 529 (801)
.+|..+...|...|++++|++.|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4677888888888888888888888877 4554
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.72 E-value=2.8 Score=37.90 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=42.5
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710 609 RKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG 662 (801)
Q Consensus 609 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 662 (801)
...++.+.++.++.-+.-+.|..+..-..-++++...|+|++|.++++.+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 456677778888877777888888887788888888888888888888876654
No 281
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.51 E-value=1.5 Score=40.76 Aligned_cols=65 Identities=9% Similarity=-0.002 Sum_probs=54.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 003710 599 RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGL 663 (801)
Q Consensus 599 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 663 (801)
+.|..-..+..+.+.++.|.....+++++.|.+..+....+.+|.+..++++|.+-++.+.+...
T Consensus 135 Ily~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 135 ILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 33444445667888899999999999999999888888889999999999999999999988644
No 282
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.46 E-value=70 Score=36.99 Aligned_cols=117 Identities=14% Similarity=0.026 Sum_probs=65.9
Q ss_pred hHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHH----HHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhcc
Q 003710 173 NSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMI----GGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIE 248 (801)
Q Consensus 173 ~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 248 (801)
..-++++.+...++.|..+-+.-.. |..+-..+. +-+.+.|++++|...|-+-... +.| ..++.-+-..
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 4455666666666666666554321 222222222 3344677888887777664321 222 2334444444
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcC
Q 003710 249 GCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIF 297 (801)
Q Consensus 249 ~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~ 297 (801)
..+..--.+++.+.+.|+. +...-+.|+.+|.|.++.++-.++.+...
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 4444555566666677754 34445678888888888887777666543
No 283
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.46 E-value=2.2 Score=29.15 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003710 497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES 531 (801)
Q Consensus 497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 531 (801)
+|..+...|...|++++|+++|++.++ ..||..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 466677777778888888888888877 356554
No 284
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.41 E-value=3.3 Score=29.73 Aligned_cols=32 Identities=19% Similarity=0.090 Sum_probs=25.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCchhH
Q 003710 604 LLTASRKNNDIVSAEFAARHVLSSAQDNTGCY 635 (801)
Q Consensus 604 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 635 (801)
|.-++.+.|+++.|.+..+.+++.+|+|..+-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 45578899999999999999999999986543
No 285
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.34 E-value=3.1 Score=37.00 Aligned_cols=54 Identities=7% Similarity=0.029 Sum_probs=46.6
Q ss_pred hcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 003710 610 KNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGL 663 (801)
Q Consensus 610 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 663 (801)
..++.+.++.++.-+.-+.|+.+..-..-++++...|+|+||.++++.+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 377888888888888889999988888889999999999999999998887654
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.33 E-value=13 Score=34.77 Aligned_cols=96 Identities=10% Similarity=0.069 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh------HH
Q 003710 497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNES--TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGI------EH 568 (801)
Q Consensus 497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~~ 568 (801)
.|..+..-|++.|+.++|++.|.++.+....|... .+..++..+...|++..+..+.........-..+. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 46667777788888888899999999877666655 46778888888899999888887765432111111 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC
Q 003710 569 YGCIIDLLGRIGNLDQAKRFIEEMPS 594 (801)
Q Consensus 569 ~~~li~~~~~~g~~~eA~~~~~~m~~ 594 (801)
|..|. +...|++.+|-+.|-+...
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHccCc
Confidence 22222 3356788888887776653
No 287
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.17 E-value=36 Score=34.28 Aligned_cols=144 Identities=10% Similarity=0.026 Sum_probs=97.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCH
Q 003710 504 AYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNL 582 (801)
Q Consensus 504 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~ 582 (801)
.....|+..+|..+|+...... .-+...-..+..++...|+++.|..++..+-.+ ..-+ ......=+..+.++...
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHhcC
Confidence 4566788888999999988742 223445667788999999999999999987542 1111 11223446677777777
Q ss_pred HHHHHHHHhCCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCCCchhHHHHHHHHHHcCCchH
Q 003710 583 DQAKRFIEEMPSAP-TARIWGALLTASRKNNDIVSAEFAARHVLSS--AQDNTGCYVLLSNMYAEAGRWED 650 (801)
Q Consensus 583 ~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~y~~~g~~~~ 650 (801)
.+..++..+.-..| |...-..|...+...|+.+.|...+=.+++. .-.|...-..|..++..-|.-+.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 76666666665566 4555566777788889998887766555544 34466666777777777775544
No 288
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.69 E-value=4.4 Score=40.66 Aligned_cols=61 Identities=13% Similarity=0.055 Sum_probs=50.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 600 IWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 600 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
+...++..+...|+.+.+...++.+++.+|-+...|..+..+|.+.|+...|...++.++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3445566667777888888888888899999999999999999999999999999888876
No 289
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.42 E-value=10 Score=38.19 Aligned_cols=79 Identities=15% Similarity=0.253 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCChHHHHH
Q 003710 496 VSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRK----DYGIVPGIEHYGC 571 (801)
Q Consensus 496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~~~ 571 (801)
.+++.++..+...|+.+.+.+.++++.... +-|...|..++.++...|+...|+..|+.+.+ +.|+.|.......
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345667777777777888899999988843 44777899999999999999999998888765 4577777665554
Q ss_pred HHHH
Q 003710 572 IIDL 575 (801)
Q Consensus 572 li~~ 575 (801)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 290
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.10 E-value=17 Score=32.47 Aligned_cols=72 Identities=25% Similarity=0.146 Sum_probs=49.6
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CcchHHHHHHHHHh-cCCHHH
Q 003710 542 ISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPSAP-TARIWGALLTASRK-NNDIVS 616 (801)
Q Consensus 542 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~-~g~~~~ 616 (801)
..++.+++..+++.|. -+.|+ .+.-..-+..+.+.|+++||..++++....+ ....-.+|+..|.. .||.+.
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH
Confidence 4788888888888886 56676 4444555667788999999999999987654 33444456665544 355443
No 291
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.02 E-value=13 Score=37.63 Aligned_cols=161 Identities=10% Similarity=-0.023 Sum_probs=113.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH----HHHhcCCH
Q 003710 507 IHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIID----LLGRIGNL 582 (801)
Q Consensus 507 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~----~~~~~g~~ 582 (801)
-.|+..+|-..++++++. .+.|...+.-.=.+|.-.|+.+.-...++.+.. .-.|+...|+.+=. ++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888889998874 566777787778899999999998888888764 33566655554433 44578999
Q ss_pred HHHHHHHHhCCCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCC----CchhHHHHHHHHHHcCCchHHHHHHH
Q 003710 583 DQAKRFIEEMPSA--PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQD----NTGCYVLLSNMYAEAGRWEDVEQIKA 656 (801)
Q Consensus 583 ~eA~~~~~~m~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~ 656 (801)
++|.+.-++...- -|.-.-.++.......|+..+|.+...+--..=.+ -...|-..+-.|.+.+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998887642 33333445666677788888888877654321111 13345566667788899999999998
Q ss_pred HHHHCCCccCCccc
Q 003710 657 IMEKEGLKKTTGCS 670 (801)
Q Consensus 657 ~m~~~g~~~~~~~s 670 (801)
.=.-+.+.|+.+++
T Consensus 272 ~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 272 REIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHhhccchhh
Confidence 76555566665533
No 292
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.84 E-value=1.8 Score=27.40 Aligned_cols=30 Identities=13% Similarity=-0.092 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 003710 600 IWGALLTASRKNNDIVSAEFAARHVLSSAQ 629 (801)
Q Consensus 600 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 629 (801)
+|..+...+...|+.+.|...++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344455555556666666666666665555
No 293
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.20 E-value=2.9 Score=42.19 Aligned_cols=112 Identities=12% Similarity=0.030 Sum_probs=77.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcC
Q 003710 536 LLSSCSISGMVDEGWNYFDSMRKDYGIVP-GIEHYGCIIDLLGRIGNLDQAKRFIEEMPSA--PTARIWGALLTASRKNN 612 (801)
Q Consensus 536 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~--p~~~~~~~ll~~~~~~g 612 (801)
-.+-|.++|.+++|+..|..-. .+.| +...|..-..+|.+..++..|..=.+....- .-.-.|..-..+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999998765 4567 6788888888999999998887766654311 11223333334444568
Q ss_pred CHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003710 613 DIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQI 654 (801)
Q Consensus 613 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 654 (801)
+.++|.+-++.+++++|.+.. |-..|+.-....|+.-+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIA 217 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHH
Confidence 899999999999999999644 44455555555554433
No 294
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=82.87 E-value=19 Score=31.23 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=24.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 003710 506 AIHGLGKISIQLFSEMREKGIKP-NESTFVSLLSSCSISGMVDEGWNYFDSMRK 558 (801)
Q Consensus 506 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 558 (801)
+..|+.+.|++.|.+.+. +-| +...|+.-..++.-.|+.++|+.=+++..+
T Consensus 54 aE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 334444444555555544 222 333455555555555555555554444443
No 295
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=82.48 E-value=10 Score=35.04 Aligned_cols=45 Identities=13% Similarity=0.037 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHccCCCCchhHHHHHHHHHHcCC----chHHHHHHHHHH
Q 003710 615 VSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGR----WEDVEQIKAIME 659 (801)
Q Consensus 615 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~----~~~a~~~~~~m~ 659 (801)
++|..-+++++.++|+...++..++++|...+. -.+|.++|++..
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 457778888999999999999999999988765 234444444443
No 296
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.19 E-value=1.5 Score=39.56 Aligned_cols=86 Identities=13% Similarity=0.039 Sum_probs=64.6
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhh
Q 003710 139 FVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVS 218 (801)
Q Consensus 139 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~ 218 (801)
.++..+.+.+.......+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35677777788888888888888877667788999999999999888999998884332 445667777777888888
Q ss_pred HHHHHHHHH
Q 003710 219 SLVFFKEMQ 227 (801)
Q Consensus 219 A~~l~~~m~ 227 (801)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 877777653
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.66 E-value=3 Score=26.20 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003710 497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN 529 (801)
Q Consensus 497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 529 (801)
.|..+...|...|++++|++.|++..+ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 567778888888888888999888877 4454
No 298
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=79.86 E-value=80 Score=32.74 Aligned_cols=88 Identities=7% Similarity=0.072 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhC-CCCCCC---HhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCC-----CchHH
Q 003710 405 SWNAMIAAYVRNGQNREAMELFQDLWS-EPLKPD---AMTFASILPAYAEIATLSDSMQIHSLITKLGLV-----SNIYI 475 (801)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-----~~~~~ 475 (801)
.|-.+..++-+.-++.+++.+-+.-.. .|..|. .....++-.+....+.++++.+.|+.+.+.... ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444455555555555555555444322 122231 112223445555666777777777766643211 23345
Q ss_pred HHHHHHHHHhcCCcccc
Q 003710 476 SNSIVYMYAKCGDLQTA 492 (801)
Q Consensus 476 ~~~li~~y~~~g~~~~A 492 (801)
+-+|-..|++..++++|
T Consensus 165 cv~Lgslf~~l~D~~Ka 181 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKA 181 (518)
T ss_pred hhhHHHHHHHHHhhhHH
Confidence 66666666666666665
No 299
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.16 E-value=5 Score=40.58 Aligned_cols=78 Identities=9% Similarity=-0.051 Sum_probs=55.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 003710 502 IMAYAIHGLGKISIQLFSEMREKGIKP-NESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIG 580 (801)
Q Consensus 502 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 580 (801)
.+-|.++|.+++|+..|..-+. +.| |.+++..-..||.+...+..|..=.+.... .-...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 5789999999999999998777 667 999999989999998888777665554432 1123456666655
Q ss_pred CHHHHHHHHH
Q 003710 581 NLDQAKRFIE 590 (801)
Q Consensus 581 ~~~eA~~~~~ 590 (801)
.-.+++..+.
T Consensus 173 ~AR~~Lg~~~ 182 (536)
T KOG4648|consen 173 QARESLGNNM 182 (536)
T ss_pred HHHHHHhhHH
Confidence 4444444333
No 300
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.04 E-value=75 Score=31.95 Aligned_cols=148 Identities=11% Similarity=0.032 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH-------Hh------------------cCCCCC
Q 003710 511 GKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMR-------KD------------------YGIVPG 565 (801)
Q Consensus 511 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-------~~------------------~~~~p~ 565 (801)
..+|+++|--+.+.. --.++-.-++.++-..-+..+|...|.... .. .+..-|
T Consensus 149 s~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 356777777776642 122344445555555555555555443221 10 022234
Q ss_pred hHHHHHHHHHHHhc-CCHHHHHHHHHhCCC---C-------CC-----cchHHHHH----HHHHhcCCHHHHHHHHHHHH
Q 003710 566 IEHYGCIIDLLGRI-GNLDQAKRFIEEMPS---A-------PT-----ARIWGALL----TASRKNNDIVSAEFAARHVL 625 (801)
Q Consensus 566 ~~~~~~li~~~~~~-g~~~eA~~~~~~m~~---~-------p~-----~~~~~~ll----~~~~~~g~~~~a~~~~~~~~ 625 (801)
+.-|-..+.-.-+- -.++++.+++..... + .| ..+|..++ .+|...|...+|.++.++++
T Consensus 227 v~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~l 306 (361)
T COG3947 227 VQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRAL 306 (361)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 44455554443322 346777777665532 0 11 12333333 46889999999999999999
Q ss_pred ccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 626 SSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 626 ~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
.++|-+...+-.|.+.|+..|+--+|.+-++++.+
T Consensus 307 tldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 307 TLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred hcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 99999999999999999999999888888888865
No 301
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.86 E-value=2.9 Score=24.77 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHH
Q 003710 633 GCYVLLSNMYAEAGRWEDVEQIKA 656 (801)
Q Consensus 633 ~~~~~l~~~y~~~g~~~~a~~~~~ 656 (801)
.....|+.+|...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345678888999999999988764
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=78.45 E-value=40 Score=31.56 Aligned_cols=61 Identities=10% Similarity=0.088 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCH--hhHHHHHHHHHhhcChhhHHHHHHHHH
Q 003710 405 SWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDA--MTFASILPAYAEIATLSDSMQIHSLIT 465 (801)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~i~~~~~ 465 (801)
.+..+..-|++.|+.++|++.|.++.+....+.. ..+-.+|..+...+++..+......+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4555666666666666666666666655444432 234455566666666666666655544
No 303
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=78.27 E-value=64 Score=33.14 Aligned_cols=63 Identities=16% Similarity=0.236 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHhc--cC----ChHHHHHHHHHHHHhCC---CCchHHHHHHHHH
Q 003710 217 VSSLVFFKEMQNCGLRYDRFSLISALGAISI--EG----CLKIGKEIHCQVIKSGL---EMDVMVQTSLVDM 279 (801)
Q Consensus 217 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~~----~~~~a~~l~~~~~~~g~---~~~~~~~~~li~~ 279 (801)
++.+.+++.|.+.|++-+.++|.+..-.... .. ....++.+|+.|.+.-. .++..++.+|+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~ 150 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM 150 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc
Confidence 4456678888888888888887764443333 22 34567778888877632 2344555555443
No 304
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=78.22 E-value=2.1 Score=27.38 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=18.5
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHH
Q 003710 562 IVPG-IEHYGCIIDLLGRIGNLDQAK 586 (801)
Q Consensus 562 ~~p~-~~~~~~li~~~~~~g~~~eA~ 586 (801)
+.|+ ...|..|..+|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3565 777777888888888877775
No 305
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.98 E-value=23 Score=32.85 Aligned_cols=97 Identities=13% Similarity=0.172 Sum_probs=54.4
Q ss_pred HHHHHHHHhccCC-------HHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCC----HHHHHHHHHhCCCCCCcch
Q 003710 533 FVSLLSSCSISGM-------VDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGN----LDQAKRFIEEMPSAPTARI 600 (801)
Q Consensus 533 ~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~----~~eA~~~~~~m~~~p~~~~ 600 (801)
|...|.-+++... +++|+.-|++.. .+.|+ ...+.++..+|...+. ..+|.++|
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL---~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F----------- 96 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEAL---KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYF----------- 96 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH---HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHH-----------
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHH-----------
Confidence 4444444444444 344444444444 56888 7888899888876553 33444444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCc
Q 003710 601 WGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLK 664 (801)
Q Consensus 601 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 664 (801)
+.|...++++.+.+|.|......| .+. ++|-++..++...+..
T Consensus 97 --------------~kA~~~FqkAv~~~P~ne~Y~ksL-e~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 97 --------------EKATEYFQKAVDEDPNNELYRKSL-EMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp --------------HHHHHHHHHHHHH-TT-HHHHHHH-HHH------HTHHHHHHHHHHSSS-
T ss_pred --------------HHHHHHHHHHHhcCCCcHHHHHHH-HHH------HhhHHHHHHHHHHHhh
Confidence 347778888888888875433333 222 2466676666666553
No 306
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.07 E-value=1.7 Score=39.10 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=60.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003710 343 LLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREA 422 (801)
Q Consensus 343 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 422 (801)
++..+.+.+..+....+++.+.+.+...+....+.|+.+|++.+..+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666777777777778787777667788899999999999888888888874333 3334566667777777777
Q ss_pred HHHHHHHh
Q 003710 423 MELFQDLW 430 (801)
Q Consensus 423 ~~l~~~m~ 430 (801)
.-++.++-
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 77777653
No 307
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=76.93 E-value=1e+02 Score=32.41 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=54.0
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCC----CchhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710 596 PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQD----NTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 596 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 661 (801)
....+|..+...|+++|+++.|...+.++.+.++. .+.+....+......|+-++|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44567888999999999999999999988876522 4567777899999999999999988877763
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.53 E-value=4.5 Score=26.83 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 633 GCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 633 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677899999999999999999988765
No 309
>PHA02875 ankyrin repeat protein; Provisional
Probab=76.47 E-value=1.2e+02 Score=32.94 Aligned_cols=159 Identities=15% Similarity=0.014 Sum_probs=69.1
Q ss_pred HHCCCCCCccc--HHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchh--hHhHHHHHHHhcCCchHHHHhhccCCCC---
Q 003710 126 VCEGFKADYFT--YPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVY--VCNSLIVMYMKLGCVECAERMFDEMPVR--- 198 (801)
Q Consensus 126 ~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~m~~~--- 198 (801)
.+.|..|+... ..+.+..++..++.+ +...+++.|..++.. ...+.+...++.|+.+.+..+++.-...
T Consensus 22 l~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 97 (413)
T PHA02875 22 LDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDV 97 (413)
T ss_pred HHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCccccc
Confidence 34455444322 223344444455543 334444555444322 1223445555667777766666543311
Q ss_pred -CcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhH--HHHHHHHhccCChHHHHHHHHHHHHhCCCCchH--HH
Q 003710 199 -DTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSL--ISALGAISIEGCLKIGKEIHCQVIKSGLEMDVM--VQ 273 (801)
Q Consensus 199 -d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~--~~ 273 (801)
+..-++.| ...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+.++.+ ++.|..++.. ..
T Consensus 98 ~~~~g~tpL-~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~~~d~~g 168 (413)
T PHA02875 98 FYKDGMTPL-HLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKACLDIEDCCG 168 (413)
T ss_pred ccCCCCCHH-HHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCCCCCCCC
Confidence 11122222 233344443 444555556665543221 2233344445555443333 3444433211 12
Q ss_pred HHHHHHHhcCCChHHHHHHHhhcC
Q 003710 274 TSLVDMYGKCGVVDYAERLFNMIF 297 (801)
Q Consensus 274 ~~li~~y~~~g~~~~A~~lf~~m~ 297 (801)
.+.+...+..|+.+-+..+++.-.
T Consensus 169 ~TpL~~A~~~g~~eiv~~Ll~~ga 192 (413)
T PHA02875 169 CTPLIIAMAKGDIAICKMLLDSGA 192 (413)
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCC
Confidence 223334445566665555555433
No 310
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=76.38 E-value=72 Score=30.32 Aligned_cols=200 Identities=15% Similarity=0.108 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCC-CCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHH
Q 003710 404 VSWNAMIAAYVRNGQNREAMELFQDLWSE-PLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYM 482 (801)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 482 (801)
..+......+...+....+...+...... ........+..........+....+...+.........+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 129 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD---------- 129 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc----------
Confidence 44555555666666666666666665432 1222333344444444455555566666555554332220
Q ss_pred HHhcCCccccchHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 003710 483 YAKCGDLQTARDVVSWNVIIM-AYAIHGLGKISIQLFSEMREKGIKP----NESTFVSLLSSCSISGMVDEGWNYFDSMR 557 (801)
Q Consensus 483 y~~~g~~~~A~d~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 557 (801)
..+..... .+...|+.+.|...|.+... ..| ....+......+...++.+++...+....
T Consensus 130 -------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 130 -------------LAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred -------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 00111111 56677777778888888755 333 23334444445667788889988888877
Q ss_pred HhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 003710 558 KDYGIVP-GIEHYGCIIDLLGRIGNLDQAKRFIEEMPS-APT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQD 630 (801)
Q Consensus 558 ~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 630 (801)
.. ... ....+..+...+...+.+++|...+..... .|+ ...+..+...+...++.+.+...+.+.++..|.
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 53 222 367788888888888889999888887654 343 344555555555667789999999999888886
No 311
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.14 E-value=18 Score=36.41 Aligned_cols=96 Identities=20% Similarity=0.217 Sum_probs=47.1
Q ss_pred CCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCC-CC--------cccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 003710 265 GLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFP-RN--------IVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNP 335 (801)
Q Consensus 265 g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~-~~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p 335 (801)
|......+...++..-....+++++...+-++.. ++ .++|-- .+-.-++++++.++..=..- |+-|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir----lllky~pq~~i~~l~npIqY-GiF~ 133 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR----LLLKYDPQKAIYTLVNPIQY-GIFP 133 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH----HHHccChHHHHHHHhCcchh-cccc
Confidence 3344444455555555555566666655544422 11 111111 12222444555555555444 5566
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 003710 336 DCITIINLLPSCTKLGALLEGKSIHGYAIR 365 (801)
Q Consensus 336 d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 365 (801)
|.+|+..+|+.+.+.++...|.++.-.|+.
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 666666666655555555555555544443
No 312
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=76.01 E-value=96 Score=31.58 Aligned_cols=19 Identities=21% Similarity=-0.004 Sum_probs=12.6
Q ss_pred hccCChHHHHHHHHHHHHh
Q 003710 348 TKLGALLEGKSIHGYAIRK 366 (801)
Q Consensus 348 ~~~g~~~~a~~~~~~~~~~ 366 (801)
.+.|+++.|...+..+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhhCCHHHHHHHHHHhhhH
Confidence 3567777777777766553
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.53 E-value=6.9 Score=25.87 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003710 496 VSWNVIIMAYAIHGLGKISIQLFSEMRE 523 (801)
Q Consensus 496 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 523 (801)
.+++.|...|...|++++|++++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777877777654
No 314
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.39 E-value=40 Score=31.76 Aligned_cols=26 Identities=19% Similarity=0.092 Sum_probs=17.8
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCc
Q 003710 607 ASRKNNDIVSAEFAARHVLSSAQDNT 632 (801)
Q Consensus 607 ~~~~~g~~~~a~~~~~~~~~~~p~~~ 632 (801)
+|.+...++.|..-++++++.+|...
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 34555667777777778888877643
No 315
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.18 E-value=20 Score=29.31 Aligned_cols=61 Identities=11% Similarity=0.164 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003710 512 KISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIID 574 (801)
Q Consensus 512 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 574 (801)
-++.+-++.+....+.|+.....+.|.||.+.+++..|.++|+..+.+-| .+...|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 34456666677777889999999999999999999999999998875422 34456665543
No 316
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.02 E-value=1.7e+02 Score=33.88 Aligned_cols=154 Identities=12% Similarity=0.125 Sum_probs=75.3
Q ss_pred HHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHH--HHHHhc--cCCHHH--HHHHHHHhHHhcCCCCC--hHHH
Q 003710 506 AIHGLGKISIQLFS--------EMREKGIKPNESTFVSL--LSSCSI--SGMVDE--GWNYFDSMRKDYGIVPG--IEHY 569 (801)
Q Consensus 506 ~~~g~~~~A~~l~~--------~m~~~g~~p~~~t~~~l--l~a~~~--~g~~~~--a~~~~~~m~~~~~~~p~--~~~~ 569 (801)
-..|+.+.|+..|. .....+...+..+|..| +.-+.. ....++ ..++++.+.....-.|+ ...+
T Consensus 415 q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a 494 (608)
T PF10345_consen 415 QSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTA 494 (608)
T ss_pred HHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHH
Confidence 34588899999997 44444444333333321 111111 222223 67777766543233333 3333
Q ss_pred HHH-HHHHHhcC---------CHHHHHHHH-HhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccC---CCCch-h
Q 003710 570 GCI-IDLLGRIG---------NLDQAKRFI-EEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSA---QDNTG-C 634 (801)
Q Consensus 570 ~~l-i~~~~~~g---------~~~eA~~~~-~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~-~ 634 (801)
.++ +.++..-- .+.++++.. +.....--....-+++..-.-.|+.++..........+- |+... .
T Consensus 495 ~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~L 574 (608)
T PF10345_consen 495 YCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQL 574 (608)
T ss_pred HHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 333 33333211 233444444 322211111223334444344688777655554444332 33222 2
Q ss_pred H-----HHHHHHHHHcCCchHHHHHHHHHH
Q 003710 635 Y-----VLLSNMYAEAGRWEDVEQIKAIME 659 (801)
Q Consensus 635 ~-----~~l~~~y~~~g~~~~a~~~~~~m~ 659 (801)
+ ..+.+.|...|+.++|........
T Consensus 575 W~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 575 WHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 2 256667888999999998887654
No 317
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.83 E-value=24 Score=37.58 Aligned_cols=120 Identities=16% Similarity=0.117 Sum_probs=56.6
Q ss_pred HcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 003710 507 IHGLGKISI-QLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQA 585 (801)
Q Consensus 507 ~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 585 (801)
..|+...|- +++.-+....-.|+.+.+.+.+ +.+.|.++.+...+..... -+.....+..|++.-..+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 345555443 3444444444445555444433 4456666666666555443 2223345555666666666666666
Q ss_pred HHHHHhCCCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 003710 586 KRFIEEMPSA--PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQD 630 (801)
Q Consensus 586 ~~~~~~m~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 630 (801)
...-+.|... .++.+...........|-++++...+++++.++|+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 6655555421 12222222222233334444444444444444443
No 318
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=74.77 E-value=1.7e+02 Score=33.82 Aligned_cols=65 Identities=20% Similarity=0.045 Sum_probs=39.3
Q ss_pred cccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCh-------HHHHHHHHHHHHhCC
Q 003710 200 TVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCL-------KIGKEIHCQVIKSGL 266 (801)
Q Consensus 200 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-------~~a~~l~~~~~~~g~ 266 (801)
...| ++|--+.+.|++++|.++..+... ........|...+..+....+- +....-+.+..+...
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 3445 467778899999999998855543 3556667788888888664322 234444555544443
No 319
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.92 E-value=7.3 Score=24.46 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 633 GCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 633 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999988765
No 320
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.85 E-value=36 Score=31.30 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=25.2
Q ss_pred hcCCchHHHHhhccCCCC-C---cccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCC
Q 003710 181 KLGCVECAERMFDEMPVR-D---TVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRY 233 (801)
Q Consensus 181 ~~g~~~~A~~~f~~m~~~-d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 233 (801)
..|.+++.....+-+..+ + ...-.+|--+-.+.|++.+|.++|..+......|
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 445555555554444311 1 1122334444455666666666666655443333
No 321
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=73.78 E-value=24 Score=29.18 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=42.0
Q ss_pred HHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHH-HhCCCCchHHHHHHHH
Q 003710 421 EAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLIT-KLGLVSNIYISNSIVY 481 (801)
Q Consensus 421 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~-~~g~~~~~~~~~~li~ 481 (801)
+...-++.+....+.|+.....+.|.||.+.+++..|.++++-+. |.|-..+ +|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHHH
Confidence 555666777778899999999999999999999999999999888 4443322 5655543
No 322
>PRK10941 hypothetical protein; Provisional
Probab=73.00 E-value=31 Score=34.72 Aligned_cols=61 Identities=11% Similarity=-0.046 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710 601 WGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 601 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 661 (801)
.+.|-.++...++++.|.+..+.++.+.|+++.-+.-.+-+|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3566778899999999999999999999999998889999999999999999988777654
No 323
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=72.90 E-value=32 Score=28.15 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=41.4
Q ss_pred CCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 003710 592 MPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGL 663 (801)
Q Consensus 592 m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 663 (801)
+-.-|++.+..+-+.||++.+|+..|.++++-+...-..+...|-.+. .++...+.+.|+
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l------------qeikp~l~ELGI 95 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL------------QEIKPTLKELGI 95 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH------------HHHhHHHHHHCC
Confidence 333588889999999999999999999999876533332444454442 445556666665
No 324
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.70 E-value=31 Score=38.04 Aligned_cols=76 Identities=22% Similarity=0.231 Sum_probs=52.8
Q ss_pred HHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHH
Q 003710 382 YAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIH 461 (801)
Q Consensus 382 y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 461 (801)
..+.|+++.|.++..+ ..+..-|..|-.+..+.|++..|.+.|..... |..|+-.+...|+-+....+-
T Consensus 647 al~lgrl~iA~~la~e--~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVE--ANSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHh--hcchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 3456777777776543 34567799999999999999999999987754 556666677777765554444
Q ss_pred HHHHHhC
Q 003710 462 SLITKLG 468 (801)
Q Consensus 462 ~~~~~~g 468 (801)
....+.|
T Consensus 716 ~~~~~~g 722 (794)
T KOG0276|consen 716 SLAKKQG 722 (794)
T ss_pred HHHHhhc
Confidence 4444444
No 325
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=72.63 E-value=2.3e+02 Score=34.51 Aligned_cols=82 Identities=9% Similarity=0.004 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHhccCCHHH-HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHH
Q 003710 528 PNESTFVSLLSSCSISGMVDE-GWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLT 606 (801)
Q Consensus 528 p~~~t~~~ll~a~~~~g~~~~-a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~ 606 (801)
+|...-.....++...+..+. +...+..+.+ .++...-...+.++++.|..+.+...+..+...++..+-...+.
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~ 829 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAAR 829 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHH
Confidence 444444444455555443322 2233333322 24555666666666666665444333444444455555555555
Q ss_pred HHHhcCC
Q 003710 607 ASRKNND 613 (801)
Q Consensus 607 ~~~~~g~ 613 (801)
++...+.
T Consensus 830 aL~~l~~ 836 (897)
T PRK13800 830 ALAGAAA 836 (897)
T ss_pred HHHhccc
Confidence 6555554
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=72.52 E-value=4.5 Score=25.14 Aligned_cols=28 Identities=14% Similarity=0.231 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710 634 CYVLLSNMYAEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 634 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 661 (801)
++..++.+|.+.|++++|.+.++.+.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567889999999999999999988764
No 327
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.45 E-value=17 Score=30.05 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=41.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003710 514 SIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIID 574 (801)
Q Consensus 514 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 574 (801)
..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+-| +....|..+++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 345556666677889999999999999999999999999999886533 33446776654
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.24 E-value=85 Score=34.87 Aligned_cols=128 Identities=13% Similarity=0.118 Sum_probs=84.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 003710 499 NVIIMAYAIHGLGKISIQLFSEMREKGIKPNEST-FVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLG 577 (801)
Q Consensus 499 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 577 (801)
+.++.-+..+|..++|+++ .||..- |.. ..+.|+++.|.++..+.. +..-|..|.++..
T Consensus 618 t~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAVEAN-------SEVKWRQLGDAAL 677 (794)
T ss_pred hhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHHhhc-------chHHHHHHHHHHh
Confidence 3344444555555555543 344332 322 245788898888755442 3567999999999
Q ss_pred hcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 003710 578 RIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAI 657 (801)
Q Consensus 578 ~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 657 (801)
.+|++..|.+.+.+.. -|..|+-.+...|+.+.-..+.....+....|. --..|...|++++..+++..
T Consensus 678 ~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 678 SAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch-----HHHHHHHcCCHHHHHHHHHh
Confidence 9999999999998754 477788888888887755555555444444433 23467788999998887744
No 329
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.32 E-value=29 Score=35.01 Aligned_cols=102 Identities=12% Similarity=0.088 Sum_probs=66.8
Q ss_pred hCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCC-CC-----cccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChh
Q 003710 163 SGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPV-RD-----TVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRF 236 (801)
Q Consensus 163 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~d-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 236 (801)
.|....+.+...++..-....+++++...+-.+.+ ++ ..+-.+.++-+ -.-++++++.++..=..-|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 34445555566666666666777777776655542 11 11112233333 3346778888888888888888888
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 003710 237 SLISALGAISIEGCLKIGKEIHCQVIKSG 265 (801)
Q Consensus 237 t~~~ll~a~~~~~~~~~a~~l~~~~~~~g 265 (801)
|+..+|+.+.+.+++..|.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888777776554
No 330
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.24 E-value=31 Score=30.86 Aligned_cols=77 Identities=9% Similarity=0.146 Sum_probs=50.9
Q ss_pred HhHHHHHHHhcCCchHHHHhhccCC---------CCCcccHHHHHHHHHcCCC-hhhHHHHHHHHHhCCCCCChhhHHHH
Q 003710 172 CNSLIVMYMKLGCVECAERMFDEMP---------VRDTVSWNSMIGGYCSVGD-GVSSLVFFKEMQNCGLRYDRFSLISA 241 (801)
Q Consensus 172 ~~~li~~y~~~g~~~~A~~~f~~m~---------~~d~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~l 241 (801)
.|.++.-.+..+.+....++++.+. ..|-.+|++++.+..+..- --.+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444444444444444444432 3366778888888876665 34567788888888888888888888
Q ss_pred HHHHhcc
Q 003710 242 LGAISIE 248 (801)
Q Consensus 242 l~a~~~~ 248 (801)
+++|.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8888654
No 331
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=70.18 E-value=1.5e+02 Score=31.24 Aligned_cols=112 Identities=12% Similarity=0.089 Sum_probs=78.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCC--------CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-------chhH
Q 003710 571 CIIDLLGRIGNLDQAKRFIEEMPSAP--------TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDN-------TGCY 635 (801)
Q Consensus 571 ~li~~~~~~g~~~eA~~~~~~m~~~p--------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~ 635 (801)
.|...+-.+|++++|.+++.+.+.+- -.....--+..|...+|+-.|..+.+++....-++ ...|
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY 215 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYY 215 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHH
Confidence 46667788999999999999887421 01111123456888899999988888876432221 3468
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCccCCcccEEEECCEEEEEe
Q 003710 636 VLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGETHRFI 682 (801)
Q Consensus 636 ~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~ 682 (801)
.+++.+..+.+.+=++.+.++..-+-|-.+....-|+++-..+-.|+
T Consensus 216 ~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~ 262 (439)
T KOG1498|consen 216 ELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFC 262 (439)
T ss_pred HHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEE
Confidence 89999999999999999999999887776664445766544444444
No 332
>PF13934 ELYS: Nuclear pore complex assembly
Probab=69.67 E-value=48 Score=32.51 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=66.8
Q ss_pred HHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 003710 498 WNVIIMAY--AIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDL 575 (801)
Q Consensus 498 ~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 575 (801)
+...+.|+ ..++++++|++++-.- .+.|+... -++.++...|+.+.|..+++.+.. .-.+.+....+..+
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 34455554 3567788888877322 23333222 367777778999999999887642 11223334444444
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 003710 576 LGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNN 612 (801)
Q Consensus 576 ~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g 612 (801)
..+|.+.||..+......+-....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 667899999999988775433557788887776544
No 333
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=69.08 E-value=1.2e+02 Score=29.91 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=26.0
Q ss_pred HHcCCHHHHHHHHHHHhCCCC--CCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHh
Q 003710 414 VRNGQNREAMELFQDLWSEPL--KPDAMTFASILPAYAEIATLSDSMQIHSLITKL 467 (801)
Q Consensus 414 ~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 467 (801)
.+.|++++|.+.|+.+..... +-...+...++.+..+.++.+.|....++.++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 445555555555555543210 011233334444555555556665555555543
No 334
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.08 E-value=2.3e+02 Score=33.81 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=24.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 003710 504 AYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCS 541 (801)
Q Consensus 504 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 541 (801)
.|......+-++.+++.+....-.++..-.+.++.-|.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 45555666677888888877655566665666655554
No 335
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.68 E-value=19 Score=34.38 Aligned_cols=65 Identities=17% Similarity=0.014 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh-CCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCch
Q 003710 569 YGCIIDLLGRIGNLDQAKRFIEE-MPSAPT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTG 633 (801)
Q Consensus 569 ~~~li~~~~~~g~~~eA~~~~~~-m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 633 (801)
.+.-+..+.+.+++.+|+...+. .+.+|. ......|+.-++..|++++|..-++.+-+++|++..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34456678888999999887654 444664 556667888889999999999988888889888654
No 336
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=68.51 E-value=10 Score=22.53 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=8.1
Q ss_pred HHHHHHHHcCCchHHHHHHH
Q 003710 637 LLSNMYAEAGRWEDVEQIKA 656 (801)
Q Consensus 637 ~l~~~y~~~g~~~~a~~~~~ 656 (801)
.++..|...|++++|...++
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~ 25 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYE 25 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 33344444444444444333
No 337
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=68.32 E-value=2.9e+02 Score=33.77 Aligned_cols=255 Identities=8% Similarity=-0.085 Sum_probs=147.8
Q ss_pred HHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 003710 189 ERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEM 268 (801)
Q Consensus 189 ~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~ 268 (801)
..+...+..+|...--.-+..+.+.+.. +++..+.+.... +|...=...+.++...+........+..+++ .+
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SP 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CC
Confidence 3444555577777777777777777753 455555555432 3444334555555444321111223333333 25
Q ss_pred chHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHh
Q 003710 269 DVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCT 348 (801)
Q Consensus 269 ~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~ 348 (801)
|..+-...++.+...+.- ....+...+..+|...-...+.++.+.+..+. +..... .+|...-.....++.
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~----D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT----DENREVRIAVAKGLA 767 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc----CCCHHHHHHHHHHHH
Confidence 667766777776654422 12345556667777666677777776654432 222222 355566666666777
Q ss_pred ccCChHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHH-HHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003710 349 KLGALLE-GKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTE-KLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELF 426 (801)
Q Consensus 349 ~~g~~~~-a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~-~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 426 (801)
..+..+. +...+..+.+ .++..+-.+.+..+.+.|..+.+. .+...+.+++...-...+.++...+. +++...+
T Consensus 768 ~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred HhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 6665432 2333333332 457888889999999998866543 34445556666555666777777765 5677777
Q ss_pred HHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHH
Q 003710 427 QDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITK 466 (801)
Q Consensus 427 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 466 (801)
..+.. .|+...-...+.++.+...-..+...+..+.+
T Consensus 844 ~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 77764 46666666677777776444556666666655
No 338
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=68.07 E-value=31 Score=36.79 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=37.9
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHH
Q 003710 576 LGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQ 653 (801)
Q Consensus 576 ~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 653 (801)
+...|.++.|...+..... .....+...++......|++++|...++.++..+-.++.+...-+-.-...|-+|++.-
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 3444555555555443321 12233444444444555555555555555554444444333322222333344555555
Q ss_pred HHHHHHH
Q 003710 654 IKAIMEK 660 (801)
Q Consensus 654 ~~~~m~~ 660 (801)
.++++-.
T Consensus 413 ~wk~~~~ 419 (831)
T PRK15180 413 YWKRVLL 419 (831)
T ss_pred HHHHHhc
Confidence 5554443
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=67.73 E-value=38 Score=32.14 Aligned_cols=74 Identities=8% Similarity=0.011 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCChHHHHHHHHHHHhcCCHHHHH
Q 003710 512 KISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGI--VPGIEHYGCIIDLLGRIGNLDQAK 586 (801)
Q Consensus 512 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~eA~ 586 (801)
++|.+.|-++...+.- +.......+..|....+.++++.++....+.+.- .+|++.+..|+..|.+.|++++|.
T Consensus 123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4567777777766644 3344444445555567788888877776654322 455777777777777777777764
No 340
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=67.65 E-value=1.8e+02 Score=31.24 Aligned_cols=131 Identities=12% Similarity=0.127 Sum_probs=85.8
Q ss_pred CCCCChhHH-HHHHHHHcCCChHHHHHHHhhCCCCCh---hhHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHH
Q 003710 64 IGPRNITKT-RALQELVSSGSMESACYLFEKMSYLDT---YIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPF 139 (801)
Q Consensus 64 ~~~~~~~~~-~l~~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 139 (801)
-.|.+...+ .||.-|...|..++-++++++|..|-+ .+|..-|++-....++.....+|.+.....+. ...|..
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~l 114 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWML 114 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHH
Confidence 457788778 999999999999999999999987744 47999999888889999999999998865444 445555
Q ss_pred HHHHHhcCCChh------HHHHHHHHHHH-hCCCCc-hhhHhHHHHHHH---hcC------CchHHHHhhccCC
Q 003710 140 VIKACAGLLYLS------EGEKVHGSLFK-SGLNSD-VYVCNSLIVMYM---KLG------CVECAERMFDEMP 196 (801)
Q Consensus 140 ll~~~~~~~~~~------~a~~~~~~~~~-~g~~~~-~~~~~~li~~y~---~~g------~~~~A~~~f~~m~ 196 (801)
-|.-..+.+..- ...+.++..+. .+++|- ...|+..+..+- ..| ++|..++.+.+|.
T Consensus 115 Yl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral 188 (660)
T COG5107 115 YLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRAL 188 (660)
T ss_pred HHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 555444433221 22345555554 244443 334555544332 123 3445555565554
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=67.55 E-value=31 Score=32.72 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCC----CchhHHHHHHHHHHcCCchHHH
Q 003710 583 DQAKRFIEEMPSAP--TARIWGALLTASRKNNDIVSAEFAARHVLSSAQD----NTGCYVLLSNMYAEAGRWEDVE 652 (801)
Q Consensus 583 ~eA~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~ 652 (801)
++|.+.|-.+...| +.......+..+....|.+.++.++-+++++.++ |+..+..|+.+|.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45555555554332 3333444555666678888888888888876433 5788899999999999988874
No 342
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=67.35 E-value=1.2e+02 Score=34.66 Aligned_cols=29 Identities=17% Similarity=0.113 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003710 508 HGLGKISIQLFSEMREKGIKPNESTFVSL 536 (801)
Q Consensus 508 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 536 (801)
.|+..+|.+.+-.+...++.|...-...|
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL 536 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLL 536 (566)
T ss_dssp -----------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHH
Confidence 35666667776667666666665544333
No 343
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.10 E-value=1.3e+02 Score=29.50 Aligned_cols=131 Identities=13% Similarity=0.095 Sum_probs=67.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcC
Q 003710 502 IMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIG 580 (801)
Q Consensus 502 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 580 (801)
..+|....++++|...+.+..+ +.+-|..-|.+ +..++.|.-+.++|.+- |. +..|.--..+|..+|
T Consensus 38 AvafRnAk~feKakdcLlkA~~-~yEnnrslfhA-------AKayEqaamLake~~kl----sEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHA-------AKAYEQAAMLAKELSKL----SEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHH-------HHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHhC
Confidence 4455556666666665555543 11222222211 12234444444444321 22 444555666777777
Q ss_pred CHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------chhHHHHHHHHHHcCCchHHHHH
Q 003710 581 NLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDN------TGCYVLLSNMYAEAGRWEDVEQI 654 (801)
Q Consensus 581 ~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~ 654 (801)
..+-|-..+++.- -.....+.+.|.+++++.+.+-..+ ...|...+++|.+..+++||...
T Consensus 106 spdtAAmaleKAa-------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 106 SPDTAAMALEKAA-------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred CcchHHHHHHHHH-------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHH
Confidence 7766665555432 0122344556666666655432211 23455667777787888887776
Q ss_pred HHH
Q 003710 655 KAI 657 (801)
Q Consensus 655 ~~~ 657 (801)
+.+
T Consensus 173 ~lK 175 (308)
T KOG1585|consen 173 FLK 175 (308)
T ss_pred HHH
Confidence 644
No 344
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=66.24 E-value=13 Score=41.98 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=12.3
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHHH
Q 003710 332 NLNPDCITIINLLPSCTKLGALLEGKSIHGYA 363 (801)
Q Consensus 332 g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~ 363 (801)
.++|+.+. +..||-....-+.-..+++.+
T Consensus 796 niKP~i~a---vt~ACEE~rkSesFs~lLeLv 824 (1102)
T KOG1924|consen 796 NIKPDIVA---VTAACEELRKSESFSKLLELV 824 (1102)
T ss_pred hcChHHHH---HHHHHHHHHhhhhHHHHHHHH
Confidence 46666443 333444443333333333333
No 345
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.70 E-value=14 Score=28.94 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=31.6
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHH
Q 003710 542 ISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRF 588 (801)
Q Consensus 542 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~ 588 (801)
+....++|+..|+...++..-.|+ -.++.+|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777665333333 45677777777777777777665
No 346
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.57 E-value=3e+02 Score=32.93 Aligned_cols=130 Identities=13% Similarity=0.054 Sum_probs=65.1
Q ss_pred cHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 003710 202 SWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYG 281 (801)
Q Consensus 202 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~ 281 (801)
-|..|+.-|...|+.++|++++.+....--.-|. ...+.-..+.+.+.+.+- ++..+.-... .+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~-------------~~~~~~e~ii~YL~~l~~-~~~~Li~~y~-~wv 570 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDS-------------FQLDGLEKIIEYLKKLGA-ENLDLILEYA-DWV 570 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccccccc-------------chhhhHHHHHHHHHHhcc-cchhHHHHHh-hhh
Confidence 4888999999999999999999988653100000 001111223333333332 2111110000 011
Q ss_pred cCCChHHHHHHHhhcCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHh
Q 003710 282 KCGVVDYAERLFNMIFP--RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCT 348 (801)
Q Consensus 282 ~~g~~~~A~~lf~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~ 348 (801)
-..+.+.+.++|-.-.. .....- .-+-.|......+-+..+++.+... .-.++..-.+.++.-|+
T Consensus 571 l~~~p~~gi~Ift~~~~~~~~sis~-~~Vl~~l~~~~~~l~I~YLE~li~~-~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 571 LNKNPEAGIQIFTSEDKQEAESISR-DDVLNYLKSKEPKLLIPYLEHLISD-NRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hccCchhheeeeeccChhhhccCCH-HHHHHHhhhhCcchhHHHHHHHhHh-ccccchHHHHHHHHHHH
Confidence 12345555555544100 011111 1234556666777778888887766 45556665666665554
No 347
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=64.56 E-value=11 Score=23.32 Aligned_cols=27 Identities=19% Similarity=0.021 Sum_probs=19.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCC
Q 003710 604 LLTASRKNNDIVSAEFAARHVLSSAQD 630 (801)
Q Consensus 604 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 630 (801)
+..++...|+.+.|...++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444556677777777777777777775
No 348
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.12 E-value=24 Score=29.03 Aligned_cols=55 Identities=25% Similarity=0.280 Sum_probs=40.4
Q ss_pred HHHHHHHcCCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHCC
Q 003710 73 RALQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEG 129 (801)
Q Consensus 73 ~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 129 (801)
.-++.+...|++++|..+.+.++.||...|-+|-.+ +.|..+.+..-+.+|...|
T Consensus 44 IRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 44 IRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 445667788999999988888888888888776554 4566666666666666665
No 349
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.54 E-value=4.1 Score=41.41 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=60.3
Q ss_pred cCCHHHHHHHHHhCCC-C-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 003710 579 IGNLDQAKRFIEEMPS-A-PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKA 656 (801)
Q Consensus 579 ~g~~~eA~~~~~~m~~-~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 656 (801)
.|.+++|++.+..... . +....+.-=.+++.+.+....|++-+..+++++|+...-|-.-..+-...|+|++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 3445556555554432 1 2233333333455566666777777888888888888888777778888888888888888
Q ss_pred HHHHCCCccCCc
Q 003710 657 IMEKEGLKKTTG 668 (801)
Q Consensus 657 ~m~~~g~~~~~~ 668 (801)
...+.++....+
T Consensus 207 ~a~kld~dE~~~ 218 (377)
T KOG1308|consen 207 LACKLDYDEANS 218 (377)
T ss_pred HHHhccccHHHH
Confidence 888877765544
No 350
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=63.34 E-value=1.7e+02 Score=29.54 Aligned_cols=58 Identities=10% Similarity=0.190 Sum_probs=33.1
Q ss_pred CCchhHHHHHHHHHHccCChHHHHHHHhcC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003710 369 LPNVALETALIDMYAGSGALKMTEKLFGSM-----IEKNLVSWNAMIAAYVRNGQNREAMELF 426 (801)
Q Consensus 369 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~l~ 426 (801)
.++..+....+..+++.+++..-.++++.. +..|...|...|......|+..-...+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 445555555666666666666666655543 2335566666666666666655444333
No 351
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=63.17 E-value=2.1e+02 Score=30.40 Aligned_cols=99 Identities=16% Similarity=0.096 Sum_probs=59.8
Q ss_pred CHHHHHHH---HHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHH-hcCCHHHHHHHHHhCCC--CCC---
Q 003710 529 NESTFVSL---LSSCSISGMVDEGWNYFDSMRKDYGIVPG--IEHYGCIIDLLG-RIGNLDQAKRFIEEMPS--APT--- 597 (801)
Q Consensus 529 ~~~t~~~l---l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~-~~g~~~eA~~~~~~m~~--~p~--- 597 (801)
|..-|.++ +..+.+.|-+..|.++.+.+. .+.|+ +...-.+||.|+ ++++++--+++++.... ..+
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~ 175 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLS 175 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhh
Confidence 34444443 446777888888888888776 45554 445556677775 77777777777776433 111
Q ss_pred ---cchHHHHHHHHHhcCC--------------HHHHHHHHHHHHccCCC
Q 003710 598 ---ARIWGALLTASRKNND--------------IVSAEFAARHVLSSAQD 630 (801)
Q Consensus 598 ---~~~~~~ll~~~~~~g~--------------~~~a~~~~~~~~~~~p~ 630 (801)
...++.-+..+...++ .+.|...+.+++...|.
T Consensus 176 ~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 176 LLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 1333333333333222 27788888888877774
No 352
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.66 E-value=1.5e+02 Score=28.12 Aligned_cols=110 Identities=14% Similarity=0.078 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH-----HHHHHHhcCCHHHH
Q 003710 513 ISIQLFSEMREKGIKPNESTFV--SLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGC-----IIDLLGRIGNLDQA 585 (801)
Q Consensus 513 ~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----li~~~~~~g~~~eA 585 (801)
+.....+++....-+..--++. .+...+..+|++++|..-++..... |..+.+.. |.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3355556665532111111222 2334677789999999888866532 33333333 45567788999999
Q ss_pred HHHHHhCCCCCCcchHHHH-----HHHHHhcCCHHHHHHHHHHHHccCCC
Q 003710 586 KRFIEEMPSAPTARIWGAL-----LTASRKNNDIVSAEFAARHVLSSAQD 630 (801)
Q Consensus 586 ~~~~~~m~~~p~~~~~~~l-----l~~~~~~g~~~~a~~~~~~~~~~~p~ 630 (801)
+..++.... + .|.++ ...+...|+.+.|+..+++.++.++.
T Consensus 146 L~~L~t~~~-~---~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKE-E---SWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhcccc-c---cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 999887652 2 23332 23577788888888888888877644
No 353
>PRK12798 chemotaxis protein; Reviewed
Probab=61.64 E-value=2.3e+02 Score=30.34 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=82.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH-HHHHHHH---hc
Q 003710 508 HGLGKISIQLFSEMREKGIKPNES----TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYG-CIIDLLG---RI 579 (801)
Q Consensus 508 ~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~---~~ 579 (801)
..+..+|+++|++..- ..|-.. ...--+......|+.+++..+-..-.+.|.-.|=...|. -++.++. ..
T Consensus 161 ~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~ 238 (421)
T PRK12798 161 ATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDE 238 (421)
T ss_pred ccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccc
Confidence 3456667777777655 344322 233334456778888888777766666665555433322 2333333 33
Q ss_pred CCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHH
Q 003710 580 GNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAE 644 (801)
Q Consensus 580 g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 644 (801)
-..++-.+++..|...--..+|..+...-...|+.+.|..+.++++.+... ...-...+.+|..
T Consensus 239 ~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~-~~~~~~ra~LY~a 302 (421)
T PRK12798 239 IRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADP-DSADAARARLYRG 302 (421)
T ss_pred ccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC-CCcchHHHHHHHH
Confidence 345555566666654444567888888889999999999999999988633 3333445555543
No 354
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.45 E-value=1.7e+02 Score=28.75 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=62.4
Q ss_pred HHHHhcCCHHHHHHHHHh---------CCCCCCcchHHHH--------HHH---HHhcCCHHHHHHHHHHHHccCCCCch
Q 003710 574 DLLGRIGNLDQAKRFIEE---------MPSAPTARIWGAL--------LTA---SRKNNDIVSAEFAARHVLSSAQDNTG 633 (801)
Q Consensus 574 ~~~~~~g~~~eA~~~~~~---------m~~~p~~~~~~~l--------l~~---~~~~g~~~~a~~~~~~~~~~~p~~~~ 633 (801)
+-+.+.|++.||..-+.+ +..+|...-|.-| ++. +...|++-++++-...++..+|.|..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 345566666666554443 2346766666432 333 34678888999999999999999999
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710 634 CYVLLSNMYAEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 634 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 661 (801)
+|..-+.+.+..=+.++|..-|....+.
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 9999988888877777888877776653
No 355
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=60.33 E-value=98 Score=25.64 Aligned_cols=86 Identities=19% Similarity=0.198 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q 003710 353 LLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSE 432 (801)
Q Consensus 353 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 432 (801)
.++|..|-+.+...+-. ...+.-.-+..+...|++++|..+.+.+.-||.+.|-++-. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 44555555554444321 22222222344567788888888888888888888876654 3556666666666666665
Q ss_pred CCCCCHhhHH
Q 003710 433 PLKPDAMTFA 442 (801)
Q Consensus 433 g~~pd~~t~~ 442 (801)
| .|...+|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 44444443
No 356
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=60.21 E-value=1.4e+02 Score=31.82 Aligned_cols=31 Identities=6% Similarity=-0.142 Sum_probs=21.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003710 504 AYAIHGLGKISIQLFSEMREKGIKPNESTFV 534 (801)
Q Consensus 504 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 534 (801)
.+...+++..|.++|+++.+..+.|+..++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~ 169 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFY 169 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHH
Confidence 4556677888888888888776555554433
No 357
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.90 E-value=1.8e+02 Score=28.47 Aligned_cols=58 Identities=16% Similarity=0.119 Sum_probs=35.2
Q ss_pred HHHHhcCCHHHHHHHHHhCCC---CCCcchHHH---HHHH--HHhc-CCHHHHHHHHHHHHccCCCC
Q 003710 574 DLLGRIGNLDQAKRFIEEMPS---APTARIWGA---LLTA--SRKN-NDIVSAEFAARHVLSSAQDN 631 (801)
Q Consensus 574 ~~~~~~g~~~eA~~~~~~m~~---~p~~~~~~~---ll~~--~~~~-g~~~~a~~~~~~~~~~~p~~ 631 (801)
+.-+..|++.+|+++|++... ..+..-|.. ++.+ |.-. .|.-.+..++++..+++|.-
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 334566788888888877542 222333332 2222 3333 66667788888888999963
No 358
>PHA02875 ankyrin repeat protein; Provisional
Probab=59.74 E-value=2.6e+02 Score=30.31 Aligned_cols=205 Identities=17% Similarity=0.107 Sum_probs=101.9
Q ss_pred hcCCChhHHHHHHHHHHHhCCCCchhh--HhHHHHHHHhcCCchHHHHhhccCCCCCc---ccHHHHHHHHHcCCChhhH
Q 003710 145 AGLLYLSEGEKVHGSLFKSGLNSDVYV--CNSLIVMYMKLGCVECAERMFDEMPVRDT---VSWNSMIGGYCSVGDGVSS 219 (801)
Q Consensus 145 ~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~m~~~d~---~~~~~li~~~~~~g~~~~A 219 (801)
+..|+.+. ...+++.|..++... ..+.+...++.|+.+-+.-+++.-..++. ..+ +.+...+..|+.+.+
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~-t~L~~A~~~g~~~~v 84 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIE-SELHDAVEEGDVKAV 84 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcc-cHHHHHHHCCCHHHH
Confidence 34455543 445556777666432 45566677788888877766665333322 222 334556677777655
Q ss_pred HHHHHHHHhCCCCCChh---hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHH--HHHHHHHHhcCCChHHHHHHHh
Q 003710 220 LVFFKEMQNCGLRYDRF---SLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMV--QTSLVDMYGKCGVVDYAERLFN 294 (801)
Q Consensus 220 ~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~lf~ 294 (801)
..+++ .|...+.. .-.+.+...+..|+.+ +.+.+++.|..++... ..+.+...+..|+.+-+..+++
T Consensus 85 ~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 85 EELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred HHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 44443 33222111 1122333444556553 4455566676654321 2344555667788777777766
Q ss_pred hcCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhH---HHHHHHHhccCChHHHHHHHHHHHHhCC
Q 003710 295 MIFP---RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITI---INLLPSCTKLGALLEGKSIHGYAIRKGF 368 (801)
Q Consensus 295 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 368 (801)
.-.. +|..-++.+..+ +..|+.+ +++.+.+. |..|+...- .+.+...+..|+.+ +.+.+++.|.
T Consensus 157 ~g~~~~~~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~-ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ga 226 (413)
T PHA02875 157 HKACLDIEDCCGCTPLIIA-MAKGDIA----ICKMLLDS-GANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGA 226 (413)
T ss_pred cCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHhC-CCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCc
Confidence 5433 233333444333 3344433 33333444 655554321 23344334445443 3444555666
Q ss_pred CCch
Q 003710 369 LPNV 372 (801)
Q Consensus 369 ~~~~ 372 (801)
.++.
T Consensus 227 d~n~ 230 (413)
T PHA02875 227 DCNI 230 (413)
T ss_pred Ccch
Confidence 5553
No 359
>PRK11619 lytic murein transglycosylase; Provisional
Probab=59.21 E-value=3.4e+02 Score=31.52 Aligned_cols=114 Identities=8% Similarity=0.036 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 003710 509 GLGKISIQLFSEMREKG-IKPNES--TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQA 585 (801)
Q Consensus 509 g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 585 (801)
.+.+.|..++....... +.+... ....+.......+...++...++..... ..+......-+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 44566677776654322 222222 2222322222222244555555543221 12333334444444577777777
Q ss_pred HHHHHhCCCC-CCcchHH-HHHHHHHhcCCHHHHHHHHHHHH
Q 003710 586 KRFIEEMPSA-PTARIWG-ALLTASRKNNDIVSAEFAARHVL 625 (801)
Q Consensus 586 ~~~~~~m~~~-p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~ 625 (801)
...|..|+.. .+..-|. -+..+....|+.+.|...++++.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777642 1112222 23344455677777777777763
No 360
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.36 E-value=35 Score=34.87 Aligned_cols=93 Identities=14% Similarity=0.004 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHH
Q 003710 566 IEHYGCIIDLLGRIGNLDQAKRFIEEMPS----AP--TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLS 639 (801)
Q Consensus 566 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~----~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 639 (801)
..+|--=.+-|.+..++..|.+.|.+-.. .| +.+.|..=..+-...||+..++.-..+++..+|.+...|..=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 44555556778899999999999987643 13 2455555555556779999999999999999999999999888
Q ss_pred HHHHHcCCchHHHHHHHHH
Q 003710 640 NMYAEAGRWEDVEQIKAIM 658 (801)
Q Consensus 640 ~~y~~~g~~~~a~~~~~~m 658 (801)
..+....++++|....+..
T Consensus 161 kc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 8888888877776655443
No 361
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=58.27 E-value=2.9e+02 Score=30.38 Aligned_cols=160 Identities=13% Similarity=0.147 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003710 405 SWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYA 484 (801)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 484 (801)
..-+++..+.++-...-...+..+|..-| -+...|..+++.|... .-++-..+|+.+.+..+. |+....-|++.|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 34455666666666666666666666532 3455566666666655 445556666666665432 3344444555444
Q ss_pred hcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 003710 485 KCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNE------STFVSLLSSCSISGMVDEGWNYFDSMRK 558 (801)
Q Consensus 485 ~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 558 (801)
+ ++.+.+ ...|.+.... +-|-. ..|.-|..- -..+.+.-..+...+..
T Consensus 144 k-ik~sk~----------------------a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt 197 (711)
T COG1747 144 K-IKKSKA----------------------AEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQT 197 (711)
T ss_pred H-hchhhH----------------------HHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHH
Confidence 4 333332 3444433332 11100 011111110 02344444455555555
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 003710 559 DYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS 594 (801)
Q Consensus 559 ~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~ 594 (801)
..|..--...+--+-+-|....+++||++++..+..
T Consensus 198 ~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 198 KLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred hhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhh
Confidence 444444444455555666677777777777776654
No 362
>PF15161 Neuropep_like: Neuropeptide-like
Probab=57.52 E-value=4.2 Score=28.65 Aligned_cols=16 Identities=31% Similarity=0.673 Sum_probs=11.6
Q ss_pred eccccCCchhhhhhhhc
Q 003710 756 NNTRICEDCHSAVKKIS 772 (801)
Q Consensus 756 kn~r~c~dch~~~k~~s 772 (801)
-.-|-|.|||.+- |+-
T Consensus 11 aesRPCVDCHAFe-fmq 26 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQ 26 (65)
T ss_pred CCCCCchhhHHHH-HHH
Confidence 3578999999764 444
No 363
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=55.48 E-value=28 Score=28.32 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=33.9
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710 618 EFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 618 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 661 (801)
...+++.++.+|+|...-..++..|...|++++|.+.+-.+..+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34566777888999888889999999999999999887777654
No 364
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.59 E-value=2.2e+02 Score=27.88 Aligned_cols=61 Identities=8% Similarity=0.136 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHC--CCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 003710 509 GLGKISIQLFSEMREK--GIKPNES---TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYG 570 (801)
Q Consensus 509 g~~~~A~~l~~~m~~~--g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 570 (801)
.++++|+..|++.-+- |-+.+.. .+.-+..--+..+.+.+|+.+|++..+. .+..+.--|+
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~-s~~n~LLKys 193 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS-SLDNNLLKYS 193 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchHHHhH
Confidence 3455556666554431 1111111 2333333345567888899999887654 4544444443
No 365
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=54.30 E-value=25 Score=20.63 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003710 497 SWNVIIMAYAIHGLGKISIQLFSEMRE 523 (801)
Q Consensus 497 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 523 (801)
.|..+...+...|++++|...|++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 466667777777778888887777665
No 366
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=54.04 E-value=22 Score=24.35 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710 637 LLSNMYAEAGRWEDVEQIKAIMEKEG 662 (801)
Q Consensus 637 ~l~~~y~~~g~~~~a~~~~~~m~~~g 662 (801)
.|+.+|.+.|+.+.|+++++.....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 57888999999999999998887543
No 367
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=53.18 E-value=2.5e+02 Score=28.19 Aligned_cols=159 Identities=14% Similarity=0.055 Sum_probs=76.7
Q ss_pred cCCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCChhHHHHHHHHH----HHCCCCCCcccHHHHHHHHhcCCChh-HHH
Q 003710 80 SSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRM----VCEGFKADYFTYPFVIKACAGLLYLS-EGE 154 (801)
Q Consensus 80 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~ 154 (801)
+++++++|..++.. -...+.+.|+...|-++-.-| .+.++++|......++..+.....-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 45666777665422 233455566666555543333 33456666655555555554433211 122
Q ss_pred HHHHHHH---HhCC--CCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHHHHhC
Q 003710 155 KVHGSLF---KSGL--NSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNC 229 (801)
Q Consensus 155 ~~~~~~~---~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 229 (801)
.+...++ +.|- .-|+.....+-..|.+.|++.+|+.-|-.-..++...+-.++.-....|...++--++-
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~----- 145 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIA----- 145 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHH-----
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHH-----
Confidence 2333332 2222 34778888999999999999999988855444444444334444444444443311111
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 003710 230 GLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKS 264 (801)
Q Consensus 230 g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~ 264 (801)
..+| -+...+++..|...+....+.
T Consensus 146 ---------RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 146 ---------RAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ---------HHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred ---------HHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 1222 233456777777766665544
No 368
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=52.71 E-value=11 Score=40.24 Aligned_cols=93 Identities=12% Similarity=0.027 Sum_probs=41.1
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHH-HHHHHHHHhcCCHHHHHHHHHhCC-CCCCc-chHHHHHHHHHhcCCH
Q 003710 538 SSCSISGMVDEGWNYFDSMRKDYGIVPGIEHY-GCIIDLLGRIGNLDQAKRFIEEMP-SAPTA-RIWGALLTASRKNNDI 614 (801)
Q Consensus 538 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~g~~~eA~~~~~~m~-~~p~~-~~~~~ll~~~~~~g~~ 614 (801)
......+.++.|..++.... .+.|+..+| .-=..++.+.+++..|+.=..+.. ..|.- ..|-.=..+|...+..
T Consensus 12 n~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 33444555666666665554 345553322 222244555555555443333222 12221 1111112334444455
Q ss_pred HHHHHHHHHHHccCCCCch
Q 003710 615 VSAEFAARHVLSSAQDNTG 633 (801)
Q Consensus 615 ~~a~~~~~~~~~~~p~~~~ 633 (801)
..|...++....+.|+++.
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHhhhcCcCcHH
Confidence 5555555555555665543
No 369
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=52.06 E-value=1.5e+02 Score=29.83 Aligned_cols=87 Identities=14% Similarity=0.128 Sum_probs=57.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh-
Q 003710 502 IMAYAIHGLGKISIQLFSEMRE--KGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGR- 578 (801)
Q Consensus 502 i~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~- 578 (801)
|.+++..+++.+++...-+--+ +.++|...-...+ .|++.|......++-....+. .-.-+..-|..++.+|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 6778888888887654433222 1245544444444 478899999888888877654 112224558888887764
Q ss_pred ----cCCHHHHHHHHHh
Q 003710 579 ----IGNLDQAKRFIEE 591 (801)
Q Consensus 579 ----~g~~~eA~~~~~~ 591 (801)
.|.++||++++..
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 6999999999954
No 370
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=51.77 E-value=4.3e+02 Score=30.49 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=34.1
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCC-----hhhHHHHHHHH--hccCChHHHHHHHH--------HHHHhCCCCchhHHH
Q 003710 313 VNAHFLESFSCLRKMLEDDNLNPD-----CITIINLLPSC--TKLGALLEGKSIHG--------YAIRKGFLPNVALET 376 (801)
Q Consensus 313 ~~g~~~~A~~l~~~m~~~~g~~pd-----~~t~~~ll~~~--~~~g~~~~a~~~~~--------~~~~~g~~~~~~~~~ 376 (801)
-.+++..|...+.+|.....-.|+ ...+...+.+. -..|+++.|...|. ...+.+...+..++.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 457777787777777654221222 12233333322 23477888888886 444455555554443
No 371
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=51.44 E-value=2.4e+02 Score=27.34 Aligned_cols=122 Identities=15% Similarity=0.104 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHH
Q 003710 497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG----IEHYGC 571 (801)
Q Consensus 497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 571 (801)
+.+..|+.+.+.+...+|+.+.++-++. +|. .-+-..++.-++-.|++++|..-++..- .+.|+ ...|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHH
Confidence 3455677788888888889998888774 454 4456667788899999999988777654 23443 555666
Q ss_pred HHHHHHhcCCHHHHH-HHHHhCCCCC-----CcchHHHHH-HHHHhc--CCHHHHHHHHHHHHccCCCC
Q 003710 572 IIDLLGRIGNLDQAK-RFIEEMPSAP-----TARIWGALL-TASRKN--NDIVSAEFAARHVLSSAQDN 631 (801)
Q Consensus 572 li~~~~~~g~~~eA~-~~~~~m~~~p-----~~~~~~~ll-~~~~~~--g~~~~a~~~~~~~~~~~p~~ 631 (801)
+|++- .+. ++|..-. .| ....|...+ .+..-+ |.-+.....-++.++..|..
T Consensus 78 lir~e-------a~R~evfag~~-~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 78 LIRCE-------AARNEVFAGGA-VPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred HHHHH-------HHHHHHhccCC-CCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 65532 222 2333211 12 234565444 343332 34444555666666666653
No 372
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=51.08 E-value=29 Score=21.03 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHccCCCCchhHHHHHH
Q 003710 612 NDIVSAEFAARHVLSSAQDNTGCYVLLSN 640 (801)
Q Consensus 612 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 640 (801)
|+.+.+..+++++++..|.+...+..++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877777766543
No 373
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=50.74 E-value=33 Score=28.45 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=47.9
Q ss_pred cccccchHHHHHHHhccCCCCCCcEEEEeccccCCchhhhhhhhccccceEEEEeCCC
Q 003710 728 KSPHHHSVRLAISFGLISTSVGNPVLVRNNTRICEDCHSAVKKISEITKRELIVRDPK 785 (801)
Q Consensus 728 ~~~~~hse~la~~~~~~~~~~~~~i~i~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~ 785 (801)
..|.-|.|.-++--=-.+..+|..+.|.--++-|..|-.+|.-.|.-.|-.|+-++.+
T Consensus 45 ~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 45 SSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 3466799977775444445559999999999999999999999999999999988754
No 374
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=50.49 E-value=1.3e+02 Score=25.41 Aligned_cols=27 Identities=26% Similarity=0.559 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhC
Q 003710 405 SWNAMIAAYVRNGQNREAMELFQDLWS 431 (801)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 431 (801)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588999999999999999999999977
No 375
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=50.48 E-value=78 Score=27.88 Aligned_cols=47 Identities=6% Similarity=0.077 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHc-cCCCC-chhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 614 IVSAEFAARHVLS-SAQDN-TGCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 614 ~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
..++..+++.+++ -.|.. ......|+-.+++.|+++.+.++.+.+.+
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3445555555554 22221 22233444455555566665555555544
No 376
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=50.46 E-value=1.5e+02 Score=28.70 Aligned_cols=45 Identities=7% Similarity=0.054 Sum_probs=32.5
Q ss_pred HHHHHHHHHccCC--C----CchhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 003710 617 AEFAARHVLSSAQ--D----NTGCYVLLSNMYAEAGRWEDVEQIKAIMEKE 661 (801)
Q Consensus 617 a~~~~~~~~~~~p--~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 661 (801)
|...++++.+.+. . ......+++.++.+.|+.++|.+.|.++...
T Consensus 144 Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 144 ALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4555555554332 1 2346668999999999999999999988764
No 377
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=49.50 E-value=3e+02 Score=27.96 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCChHH---HHHHHhhcCC--CC-cccHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 003710 272 VQTSLVDMYGKCGVVDY---AERLFNMIFP--RN-IVAWNAMVGGYVVNAHFLESFSCLRKMLED 330 (801)
Q Consensus 272 ~~~~li~~y~~~g~~~~---A~~lf~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 330 (801)
+...|+.+|...+..+. |.++.+.+.. ++ ...+-.-+..+.+.++.+++.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 44555556655554333 3333333311 22 233333344444455556666666666554
No 378
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.21 E-value=2.1e+02 Score=30.64 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=39.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHHhHHh
Q 003710 504 AYAIHGLGKISIQLFSEMREKGIKPNES--TFVSLLSSCS--ISGMVDEGWNYFDSMRKD 559 (801)
Q Consensus 504 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~~ 559 (801)
.+..++++..|.++|+++... +.++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344789999999999999987 666655 3334444443 366788999999877653
No 379
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=48.43 E-value=2.4e+02 Score=26.59 Aligned_cols=90 Identities=11% Similarity=0.023 Sum_probs=54.6
Q ss_pred CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCC--------
Q 003710 297 FPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGF-------- 368 (801)
Q Consensus 297 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-------- 368 (801)
.++-.+.|-.....-++.-+.+++-+.|-- ..=.+++-.|.+..++.+|+.+++.+.+..+
T Consensus 103 Kdk~~vPFceFAetV~k~~q~~e~dK~~LG-----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL 171 (233)
T PF14669_consen 103 KDKPGVPFCEFAETVCKDPQNDEVDKTLLG-----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGL 171 (233)
T ss_pred cccCCCCHHHHHHHHhcCCccchhhhhhhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 344555666666666655555554333311 1123566777788888888888888765422
Q ss_pred ------CCchhHHHHHHHHHHccCChHHHHHHHhc
Q 003710 369 ------LPNVALETALIDMYAGSGALKMTEKLFGS 397 (801)
Q Consensus 369 ------~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 397 (801)
.+--.+.|.....+.++|.+|.|..++++
T Consensus 172 ~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 172 TGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred cCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 23345566667777777777777777664
No 380
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=48.35 E-value=4.1e+02 Score=29.25 Aligned_cols=157 Identities=10% Similarity=0.133 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 003710 497 SWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLL 576 (801)
Q Consensus 497 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 576 (801)
..-+++..+.++-+..-...+..+|.+-| -+...|..++..|... .-+.-..+|+++.+- .+ .|+..-..|++.|
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~-df-nDvv~~ReLa~~y 142 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY-DF-NDVVIGRELADKY 142 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh-cc-hhHHHHHHHHHHH
Confidence 44566677777777777788888888844 5677888888888877 556667778877652 33 2355555677777
Q ss_pred HhcCCHHHHHHHHHhCCC-----CCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CchhHHHHHHHHHHcC
Q 003710 577 GRIGNLDQAKRFIEEMPS-----APT---ARIWGALLTASRKNNDIVSAEFAARHVLSSAQD--NTGCYVLLSNMYAEAG 646 (801)
Q Consensus 577 ~~~g~~~eA~~~~~~m~~-----~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g 646 (801)
-+ ++.+.+..+|.++.. +.+ ...|.-|... ...+.+.-.....++...... -...+..+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 66 777888877776532 112 1345444331 123344444444443322211 1223444556678888
Q ss_pred CchHHHHHHHHHHHC
Q 003710 647 RWEDVEQIKAIMEKE 661 (801)
Q Consensus 647 ~~~~a~~~~~~m~~~ 661 (801)
+|++|.++.+.+.+.
T Consensus 220 N~~eai~Ilk~il~~ 234 (711)
T COG1747 220 NWTEAIRILKHILEH 234 (711)
T ss_pred CHHHHHHHHHHHhhh
Confidence 899998888866543
No 381
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=44.78 E-value=64 Score=35.61 Aligned_cols=100 Identities=15% Similarity=0.045 Sum_probs=74.1
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHH
Q 003710 541 SISGMVDEGWNYFDSMRKDYGIVPG--IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVS 616 (801)
Q Consensus 541 ~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~ 616 (801)
...|+...|...+.... ...|. -.....|..++.+.|...+|..++..... ...+.+...+.+++....|++.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 34688888888776654 44554 33455677788888888888888776432 2345677788888888999999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHH
Q 003710 617 AEFAARHVLSSAQDNTGCYVLLSNMYA 643 (801)
Q Consensus 617 a~~~~~~~~~~~p~~~~~~~~l~~~y~ 643 (801)
|.+.++++++++|+++.+-..|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999888776655544
No 382
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.21 E-value=80 Score=29.99 Aligned_cols=34 Identities=12% Similarity=-0.043 Sum_probs=15.7
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 003710 596 PTARIWGALLTASRKNNDIVSAEFAARHVLSSAQ 629 (801)
Q Consensus 596 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 629 (801)
|++.++..++.++...|+.++|++..+++..+-|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4444444444444444444444444444444444
No 383
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.62 E-value=30 Score=30.24 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=24.1
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 003710 111 DNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKAC 144 (801)
Q Consensus 111 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 144 (801)
..|.-.+|..+|.+|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667788899999999988875 67777654
No 384
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=42.30 E-value=81 Score=22.64 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=24.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003710 501 IIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLL 537 (801)
Q Consensus 501 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 537 (801)
+.-|+.+.|++++|.+..+.+++ +.|+..-...|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 45677888888888888888888 678766544443
No 385
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=42.04 E-value=1.5e+02 Score=25.78 Aligned_cols=58 Identities=7% Similarity=0.160 Sum_probs=44.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 003710 515 IQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIID 574 (801)
Q Consensus 515 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 574 (801)
.+-+.......+.|+......-|.||.+.+++..|.++|+-++.+ ..+....|-.+++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 445556666778899999999999999999999999999988754 3444445665543
No 386
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=42.01 E-value=76 Score=30.95 Aligned_cols=65 Identities=11% Similarity=0.069 Sum_probs=42.5
Q ss_pred CCCcch-HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 003710 595 APTARI-WGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIME 659 (801)
Q Consensus 595 ~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 659 (801)
.|+..+ |..=+-.+.+..+++.+..-..+++++.|+....+..|+........+++|...+.+..
T Consensus 40 nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 40 NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 455433 33333334456667777777777777777777777777777777777777777776663
No 387
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=41.49 E-value=60 Score=22.26 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=17.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC
Q 003710 501 IIMAYAIHGLGKISIQLFSEMREKG 525 (801)
Q Consensus 501 li~~~~~~g~~~~A~~l~~~m~~~g 525 (801)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4567777777777788888777644
No 388
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=41.40 E-value=58 Score=31.16 Aligned_cols=62 Identities=11% Similarity=-0.032 Sum_probs=36.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 599 RIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 599 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
.+++-|.-.+...|+++-|.++++-+++++|...-++..-+-.+.-.|++.-|.+-+...-.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 44555555556666666666666666666666555554444455556666666655544443
No 389
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.25 E-value=1.6e+02 Score=29.14 Aligned_cols=92 Identities=12% Similarity=0.194 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--------CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCCCc----hh
Q 003710 569 YGCIIDLLGRIGNLDQAKRFIEEMPS--------APTARIWGALLTASRKNNDIVSAEFAARHVLSS--AQDNT----GC 634 (801)
Q Consensus 569 ~~~li~~~~~~g~~~eA~~~~~~m~~--------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~----~~ 634 (801)
.-.||..+.+.|++++.++.+.++.. .-+..+.++++..-....+.+.-...++.-++. +..|. .+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 33456666667777766666655531 123445566666666666666655555544431 12221 23
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 635 YVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 635 ~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
-.-|+++|...|.+....++++.+..
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHH
Confidence 35788888888888888888887754
No 390
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.14 E-value=36 Score=39.28 Aligned_cols=74 Identities=15% Similarity=0.267 Sum_probs=51.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH
Q 003710 536 LLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIV 615 (801)
Q Consensus 536 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 615 (801)
+|.-+-+.|-.+-|+.+.+.=..++ ++...+|+++.|++.-.+.. +...|..|......+||.+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchH
Confidence 3444566777777776655433322 23456788888888877754 5678888888888888888
Q ss_pred HHHHHHHHHH
Q 003710 616 SAEFAARHVL 625 (801)
Q Consensus 616 ~a~~~~~~~~ 625 (801)
.|+..+++..
T Consensus 690 IaEm~yQ~~k 699 (1202)
T KOG0292|consen 690 IAEMCYQRTK 699 (1202)
T ss_pred HHHHHHHHhh
Confidence 8888887654
No 391
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=40.76 E-value=2.6e+02 Score=24.78 Aligned_cols=30 Identities=10% Similarity=0.079 Sum_probs=24.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCch
Q 003710 604 LLTASRKNNDIVSAEFAARHVLSSAQDNTG 633 (801)
Q Consensus 604 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 633 (801)
|.-+|.+.|+++.+++..+.+++.+|+|..
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 445778888999999999999999988654
No 392
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.69 E-value=3.1e+02 Score=25.56 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=81.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHH--HHHHHhcC
Q 003710 505 YAIHGLGKISIQLFSEMREKGIKPNES-TFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIE-HYGCI--IDLLGRIG 580 (801)
Q Consensus 505 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l--i~~~~~~g 580 (801)
+++.|..++|+.-|.++.+.|..-=.+ ...-........|+...|...|+++-.+ .-.|... -..-| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 467788899999999999877543222 1222233467789999999999998765 3334322 22222 23456788
Q ss_pred CHHHHHHHHHhCCCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003710 581 NLDQAKRFIEEMPSAPTA---RIWGALLTASRKNNDIVSAEFAARHVLS 626 (801)
Q Consensus 581 ~~~eA~~~~~~m~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 626 (801)
.+++...-.+-+..+.++ ..-.+|.-+-.+.|++..|...|+++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888888888776543332 3345666677888999999888888765
No 393
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=40.68 E-value=10 Score=28.33 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=16.1
Q ss_pred eEEEEeCCCccccccccccC
Q 003710 777 RELIVRDPKCFHHFRNGCCS 796 (801)
Q Consensus 777 r~i~~rd~~~~h~f~~g~cs 796 (801)
.-|=+.|.+-.|+|+||+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMa 27 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMA 27 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EE
T ss_pred eeEecCCCCEEEEEcCCcee
Confidence 45778899999999999854
No 394
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.61 E-value=2.8e+02 Score=29.74 Aligned_cols=54 Identities=7% Similarity=0.011 Sum_probs=40.5
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChH--HHHHHHHHHH--hcCCHHHHHHHHHhCCC
Q 003710 539 SCSISGMVDEGWNYFDSMRKDYGIVPGIE--HYGCIIDLLG--RIGNLDQAKRFIEEMPS 594 (801)
Q Consensus 539 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~~~~li~~~~--~~g~~~eA~~~~~~m~~ 594 (801)
.+...+++..|.++|+.+.+. +.++.. .|..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455789999999999999874 555544 5666666666 46678899999988653
No 395
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=39.83 E-value=2.8e+02 Score=24.91 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=53.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHhccCC-HHHHHHHHHHhHHhcCCCCChHHH
Q 003710 498 WNVIIMAYAIHGLGKISIQLFSEMREKGIK-------PNESTFVSLLSSCSISGM-VDEGWNYFDSMRKDYGIVPGIEHY 569 (801)
Q Consensus 498 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-------p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~ 569 (801)
.|.++.-.+..++..-.+.+++.+.. +. -+..+|.+++.+.+.... ---+..+|+-|++ .+.+++...|
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~--l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy 118 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHF--LNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDY 118 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHH
Confidence 45555555555566655666666533 22 244568889998887776 5567788888876 3778888899
Q ss_pred HHHHHHHHhc
Q 003710 570 GCIIDLLGRI 579 (801)
Q Consensus 570 ~~li~~~~~~ 579 (801)
.+|+.+..+.
T Consensus 119 ~~li~~~l~g 128 (145)
T PF13762_consen 119 SCLIKAALRG 128 (145)
T ss_pred HHHHHHHHcC
Confidence 9998877654
No 396
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.41 E-value=6.2e+02 Score=28.78 Aligned_cols=281 Identities=11% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHH-HHcCCChhHHHHHHHHHHH-------CCCCCCcccHHHHHHHHhcCCChhH-----HHHHHHHHHHhCCCCchh
Q 003710 104 VVIRG-FVDNGLFQEAVEFHHRMVC-------EGFKADYFTYPFVIKACAGLLYLSE-----GEKVHGSLFKSGLNSDVY 170 (801)
Q Consensus 104 ~li~~-~~~~~~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~~~~~-----a~~~~~~~~~~g~~~~~~ 170 (801)
....+ +....+.+.|+.+|+.+.+ .| +.....-+-..|.+...... |..++....+.| .|+..
T Consensus 253 ~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~ 328 (552)
T KOG1550|consen 253 CYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQ 328 (552)
T ss_pred HHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHH
Q ss_pred hHhHHHHHHHh-cCCchHHHHhhccCCCCCcccHHHHHHHHHcCC-----ChhhHHHHHHHHHhCCCCCChhhHHHHHHH
Q 003710 171 VCNSLIVMYMK-LGCVECAERMFDEMPVRDTVSWNSMIGGYCSVG-----DGVSSLVFFKEMQNCGLRYDRFSLISALGA 244 (801)
Q Consensus 171 ~~~~li~~y~~-~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 244 (801)
..-..+..... ..+...|.++|...-...-..=..-+..+...| +.+.|+.++.+.-+.| .|-..--...+..
T Consensus 329 ~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~ 407 (552)
T KOG1550|consen 329 YLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYE 407 (552)
T ss_pred HHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHH
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHH
Q 003710 245 ISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCL 324 (801)
Q Consensus 245 ~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~ 324 (801)
+.. +....+.-.+..+...|.+.-...-..++.... ..++..-...+..-+-.+-......|+......+-
T Consensus 408 ~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lg 478 (552)
T KOG1550|consen 408 YGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSE--------EDLFSRGVISTLERAFSLYSRAAAQGNADAILKLG 478 (552)
T ss_pred Hcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcc--------ccccccccccchhHHHHHHHHHHhccCHHHHhhhc
Q ss_pred HHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHH
Q 003710 325 RKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLV 404 (801)
Q Consensus 325 ~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~ 404 (801)
..-..-.|+.-|...=.....-....+ ..+.--+..|.+.| .+-.. +..|.+.++...+.+.-
T Consensus 479 d~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g--------------~g~~~-~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 479 DYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHG--------------EGIKV-LHLAKRYYDQASEEDSR 541 (552)
T ss_pred ceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcC--------------cCcch-hHHHHHHHHHHHhcCch
Q ss_pred HHHHHHHHHHH
Q 003710 405 SWNAMIAAYVR 415 (801)
Q Consensus 405 ~~~~li~~~~~ 415 (801)
.+-.+..++.+
T Consensus 542 ~~~~~~~~~~~ 552 (552)
T KOG1550|consen 542 AYLPVKLALLK 552 (552)
T ss_pred hhhHHHHHhhC
No 397
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=38.92 E-value=1.1e+02 Score=27.28 Aligned_cols=64 Identities=20% Similarity=0.134 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCch
Q 003710 583 DQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWE 649 (801)
Q Consensus 583 ~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 649 (801)
++|.++++-|. ...............|++..|.++.+.++..+|+|...-.+.+++|.+.|.-.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 45666666654 22222333444567899999999999999999999988888888877665433
No 398
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.44 E-value=7.5e+02 Score=29.39 Aligned_cols=295 Identities=10% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHhcCCChhHHHHHHHHHHHhCCCCc--hhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhhH
Q 003710 142 KACAGLLYLSEGEKVHGSLFKSGLNSD--VYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSS 219 (801)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A 219 (801)
+.|...|.++.|.++-..- |+ ..++..-.+.|...+++..|-+++.++ ..++..+.--+....+.+ +
T Consensus 366 k~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~ 434 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-A 434 (911)
T ss_pred HHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-H
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHH-------------------HHHHHhCCCCchHHHHHHHHHH
Q 003710 220 LVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIH-------------------CQVIKSGLEMDVMVQTSLVDMY 280 (801)
Q Consensus 220 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~l~-------------------~~~~~~g~~~~~~~~~~li~~y 280 (801)
+..|-.=+-..++|...+=..+|....-.-.+++--.+- ..+.......+.....+.....
T Consensus 435 L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~ 514 (911)
T KOG2034|consen 435 LRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLL 514 (911)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHH
Q ss_pred hcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 003710 281 GKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIH 360 (801)
Q Consensus 281 ~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~ 360 (801)
...|+.+....+-.-|.+ |..++.-+++.+.+++|++++..-... .+.--++-.--.....++.
T Consensus 515 ~~~~~~e~ll~fA~l~~d-----~~~vv~~~~q~e~yeeaLevL~~~~~~-----------el~yk~ap~Li~~~p~~tV 578 (911)
T KOG2034|consen 515 ASHGRQEELLQFANLIKD-----YEFVVSYWIQQENYEEALEVLLNQRNP-----------ELFYKYAPELITHSPKETV 578 (911)
T ss_pred HHccCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccch-----------hhHHHhhhHHHhcCcHHHH
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q 003710 361 GYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSM-------IEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEP 433 (801)
Q Consensus 361 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 433 (801)
....+.+-.........++..+.+.+...+-......+ ...+...+|.++.-|++..+-+.-..+-..+...+
T Consensus 579 ~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~ 658 (911)
T KOG2034|consen 579 SAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKS 658 (911)
T ss_pred HHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhccc
Q ss_pred CCCCHhhHHHHHHHHHhhcChhhHHHHHHHHH
Q 003710 434 LKPDAMTFASILPAYAEIATLSDSMQIHSLIT 465 (801)
Q Consensus 434 ~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 465 (801)
- ..+-....++.|.+.+.-..+..++..+.
T Consensus 659 ~--~~YDl~~alRlc~~~~~~ra~V~l~~~l~ 688 (911)
T KOG2034|consen 659 R--VHYDLDYALRLCLKFKKTRACVFLLCMLN 688 (911)
T ss_pred c--ceecHHHHHHHHHHhCccceeeeHHHHHH
No 399
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.13 E-value=8.5e+02 Score=29.99 Aligned_cols=151 Identities=13% Similarity=0.108 Sum_probs=97.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHC-----------------------CCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHH
Q 003710 504 AYAIHGLGKISIQLFSEMREK-----------------------GIKPNE-----STFVSLLSSCSISGMVDEGWNYFDS 555 (801)
Q Consensus 504 ~~~~~g~~~~A~~l~~~m~~~-----------------------g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~ 555 (801)
+|...|...+|++.|.+.... |-.|.. .-|..++.-+-..+..+++.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 466788999999998876431 222221 2266677777788888888888777
Q ss_pred hHHhcCC-CCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCCHH------------HHHH-
Q 003710 556 MRKDYGI-VPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPSA-PTARIWGALLTASRKNNDIV------------SAEF- 619 (801)
Q Consensus 556 m~~~~~~-~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p~~~~~~~ll~~~~~~g~~~------------~a~~- 619 (801)
..+..+. .|. ..+++++.+-....|.+.+|.+.+-+-+.. ......+-|+......|.++ +-+.
T Consensus 1009 AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~ 1088 (1480)
T KOG4521|consen 1009 AIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDF 1088 (1480)
T ss_pred HHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHH
Confidence 7663222 122 567888999999999999999988775431 12234455555556666543 2222
Q ss_pred HHHHHHccCCC-CchhHHHHHHHHHHcCCchHHHHH
Q 003710 620 AARHVLSSAQD-NTGCYVLLSNMYAEAGRWEDVEQI 654 (801)
Q Consensus 620 ~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~a~~~ 654 (801)
+.+..-+..|- ....|.+|--.+...++|.+|.-+
T Consensus 1089 l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1089 LRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 33433344443 345677777778888999888765
No 400
>PRK10941 hypothetical protein; Provisional
Probab=37.65 E-value=1.8e+02 Score=29.35 Aligned_cols=66 Identities=9% Similarity=-0.100 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhH
Q 003710 570 GCIIDLLGRIGNLDQAKRFIEEMPS-APT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCY 635 (801)
Q Consensus 570 ~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 635 (801)
+.+-.+|.+.++++.|+...+.+.. .|+ +.-|.--.-.+.+.|....|..-++..++..|+++.+-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 3455566777777777777776643 343 44466556667788888888888888888888876543
No 401
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=37.38 E-value=82 Score=24.78 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=36.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHH
Q 003710 507 IHGLGKISIQLFSEMREKGIKPNE--STFVSLLSSCSISGMVDEGWNYF 553 (801)
Q Consensus 507 ~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 553 (801)
...+.++|+..|+..++.-..|.. .++..|+.+++..|++++.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778889999998875443332 36888899999999999988763
No 402
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=37.27 E-value=2.3e+02 Score=24.46 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=16.0
Q ss_pred HHHHHHHHcCCchHHHHHHHHHH
Q 003710 637 LLSNMYAEAGRWEDVEQIKAIME 659 (801)
Q Consensus 637 ~l~~~y~~~g~~~~a~~~~~~m~ 659 (801)
.-+.++...|+.+||.+.|+...
T Consensus 105 sra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 105 SRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHHH
Confidence 44556778899999988886543
No 403
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=37.19 E-value=5.5e+02 Score=27.46 Aligned_cols=123 Identities=15% Similarity=0.079 Sum_probs=74.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH--------HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHH
Q 003710 508 HGLGKISIQLFSEMREKGIKPNESTFV--------SLLSSCSISGMVDEGWNYFDSMRKDYGIVPG----IEHYGCIIDL 575 (801)
Q Consensus 508 ~g~~~~A~~l~~~m~~~g~~p~~~t~~--------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~ 575 (801)
..++++|.++-+.....-..-|..|+. -+-.++-..|+...-..++....+.-.+.-| ....|+|++.
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~ 218 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRN 218 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHH
Confidence 466677776666554332223333333 2333455567766666666655543334433 4567888888
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCcc---hHHHHHH----HHHhcCCHHHHHHHHHHHHccCCCC
Q 003710 576 LGRIGNLDQAKRFIEEMPSAPTAR---IWGALLT----ASRKNNDIVSAEFAARHVLSSAQDN 631 (801)
Q Consensus 576 ~~~~g~~~eA~~~~~~m~~~p~~~---~~~~ll~----~~~~~g~~~~a~~~~~~~~~~~p~~ 631 (801)
|...+.++.|.+++.+... |... -|-..+- .-..++++..|.+.+-+++...|.+
T Consensus 219 yL~n~lydqa~~lvsK~~~-pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 219 YLHNKLYDQADKLVSKSVY-PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HhhhHHHHHHHHHhhcccC-ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 9999999999999998763 2221 2332222 2345677888888777777777753
No 404
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=36.58 E-value=85 Score=20.38 Aligned_cols=30 Identities=7% Similarity=-0.178 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCCHHHHHHH--HHHHHccCCC
Q 003710 601 WGALLTASRKNNDIVSAEFA--ARHVLSSAQD 630 (801)
Q Consensus 601 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~ 630 (801)
|-++...+...|+.+.|+.+ ++-+..+++.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 33444555566666666666 3355444443
No 405
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.55 E-value=34 Score=29.95 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003710 508 HGLGKISIQLFSEMREKGIKPNESTFVSLLSSC 540 (801)
Q Consensus 508 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 540 (801)
.|.-.+|..+|++|++.|-.||. |..|+.++
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 45556679999999999999985 66666654
No 406
>PF13934 ELYS: Nuclear pore complex assembly
Probab=36.54 E-value=4.2e+02 Score=25.95 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=56.1
Q ss_pred CCCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchH
Q 003710 524 KGIKPNESTFVSLLSSCSI--SGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIW 601 (801)
Q Consensus 524 ~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~ 601 (801)
.++.|+- ..++.++.. .+++++|.+++-.- .+.|+ .-.-++.++.+.|+.+.|+.+++.+.-......-
T Consensus 73 f~ip~~~---~~~~~g~W~LD~~~~~~A~~~L~~p----s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~ 143 (226)
T PF13934_consen 73 FGIPPKY---IKFIQGFWLLDHGDFEEALELLSHP----SLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPLSSPEA 143 (226)
T ss_pred hCCCHHH---HHHHHHHHHhChHhHHHHHHHhCCC----CCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHH
Confidence 3465544 444555544 36777887776422 23333 2234778888899999999999997643333222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 003710 602 GALLTASRKNNDIVSAEFAARHVL 625 (801)
Q Consensus 602 ~~ll~~~~~~g~~~~a~~~~~~~~ 625 (801)
..+.......+++.+|....+...
T Consensus 144 ~~~~~~~La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 144 LTLYFVALANGLVTEAFSFQRSYP 167 (226)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCc
Confidence 223333366788888877666543
No 407
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=36.32 E-value=1.8e+02 Score=29.29 Aligned_cols=87 Identities=13% Similarity=0.153 Sum_probs=46.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHC--CCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHh
Q 003710 104 VVIRGFVDNGLFQEAVEFHHRMVCE--GFKADYFTYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMK 181 (801)
Q Consensus 104 ~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 181 (801)
.=|.++++.++|.+++...-+.-+. .++|.. ...-|-.|.+.+....+.++-..-+...-.-+..-|.++...|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3478888888888887765444322 133322 222233345666666666655555443222233335555555543
Q ss_pred -----cCCchHHHHhh
Q 003710 182 -----LGCVECAERMF 192 (801)
Q Consensus 182 -----~g~~~~A~~~f 192 (801)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 36666666655
No 408
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.95 E-value=67 Score=32.57 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003710 498 WNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLL 537 (801)
Q Consensus 498 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 537 (801)
||..|..-.+.|+.++|+++++|..+.|+.--..||...+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 5677888888888888899999999999876666766544
No 409
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.89 E-value=1.7e+02 Score=27.38 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=18.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 003710 604 LLTASRKNNDIVSAEFAARHVLSSAQDNT 632 (801)
Q Consensus 604 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 632 (801)
.+..|.+.|.+++|.++++++.+ +|++.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~ 144 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQ 144 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCch
Confidence 34557777777777777777666 55543
No 410
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.64 E-value=2.6e+02 Score=24.39 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003710 530 ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEE 591 (801)
Q Consensus 530 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~ 591 (801)
..-|.-+--.++.. .+.+.++|+.|... |+--. ..-|......+...|++++|.++++.
T Consensus 65 D~RylkiWi~ya~~--~~~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 65 DERYLKIWIKYADL--SSDPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp -HHHHHHHHHHHTT--BSHHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--ccCHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33444443334332 23888899988876 77666 77788888899999999999988864
No 411
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=35.58 E-value=1e+02 Score=21.49 Aligned_cols=29 Identities=10% Similarity=0.229 Sum_probs=13.2
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 003710 249 GCLKIGKEIHCQVIKSGLEMDVMVQTSLV 277 (801)
Q Consensus 249 ~~~~~a~~l~~~~~~~g~~~~~~~~~~li 277 (801)
|-+.+++.+++.|.+.|+..+..++..++
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 33334444444444444444444444443
No 412
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=35.56 E-value=1.8e+02 Score=25.32 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHH-HhCCCCchHHHHHHH
Q 003710 421 EAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLIT-KLGLVSNIYISNSIV 480 (801)
Q Consensus 421 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~-~~g~~~~~~~~~~li 480 (801)
|..+-+.....-.+.|+.......|.||.+.+++..|.++++-++ +.| +...+|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHH
Confidence 344445566667789999999999999999999999999999887 444 2222555444
No 413
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=34.97 E-value=2.5e+02 Score=23.67 Aligned_cols=82 Identities=15% Similarity=0.102 Sum_probs=53.1
Q ss_pred cCCChhHHHHHHHHHHHhCCCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCcccHHHHHHHHHcCCChhhHHHHHHH
Q 003710 146 GLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKE 225 (801)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 225 (801)
.....++|..+.+.+...+- -...+--.-+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 34456778888888877663 333344444455678899999966666667889999887744 577888888888887
Q ss_pred HHhCC
Q 003710 226 MQNCG 230 (801)
Q Consensus 226 m~~~g 230 (801)
+-.+|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 76554
No 414
>PF15469 Sec5: Exocyst complex component Sec5
Probab=34.95 E-value=3.8e+02 Score=25.03 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=17.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHh
Q 003710 535 SLLSSCSISGMVDEGWNYFDSMRKD 559 (801)
Q Consensus 535 ~ll~a~~~~g~~~~a~~~~~~m~~~ 559 (801)
.-|.-|.+.|+++.+...|......
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 4456677778888877777766654
No 415
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=34.81 E-value=5.1e+02 Score=26.38 Aligned_cols=110 Identities=14% Similarity=0.178 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhc-c-CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 003710 511 GKISIQLFSEMRE-KGIKPNESTFVSLLSSCSI-S-GMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKR 587 (801)
Q Consensus 511 ~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~-~-g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~ 587 (801)
..+|+++|+...- ..+--|..+...|++.... . .....-.++.+-+...++-.++..+..+.+..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3456677663211 2345566666667766554 2 23444445556666666778888899999999999999999999
Q ss_pred HHHhCCC----CCCcchHHHHHHHHHhcCCHHHHHHH
Q 003710 588 FIEEMPS----APTARIWGALLTASRKNNDIVSAEFA 620 (801)
Q Consensus 588 ~~~~m~~----~p~~~~~~~ll~~~~~~g~~~~a~~~ 620 (801)
+++.... ..|...|..++..-...||......+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 9887543 35778898888888888887654443
No 416
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=34.68 E-value=75 Score=32.05 Aligned_cols=58 Identities=24% Similarity=0.306 Sum_probs=25.2
Q ss_pred hcCCHHHHHHHHHhCCC-CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhH
Q 003710 578 RIGNLDQAKRFIEEMPS-APT-ARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCY 635 (801)
Q Consensus 578 ~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 635 (801)
+.|+.++|..+|+.... .|+ +.+...+....-.+++.-+|.+.+-+++...|.|..++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 45555555555553321 222 22222222223334444555555555555555554443
No 417
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.37 E-value=1.9e+02 Score=24.47 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=30.5
Q ss_pred ChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHh
Q 003710 285 VVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLE 329 (801)
Q Consensus 285 ~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 329 (801)
+++++.+.+.+ ..-|..++.-|...|..++|++++.+...
T Consensus 28 ~~~~~e~~L~~-----~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKE-----HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHH-----cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44455554433 34588999999999999999999999876
No 418
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=34.37 E-value=4.9e+02 Score=26.11 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=43.4
Q ss_pred chhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHh
Q 003710 371 NVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAE 450 (801)
Q Consensus 371 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 450 (801)
+......+...|.+.|++.+|+.-|-.-.+++...+..++.-....|...++ |.+.-..+| -|..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL~ 153 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYLC 153 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHHH
Confidence 6677888888999999999998887554444333332233333333333332 222222223 3444
Q ss_pred hcChhhHHHHHHHHHH
Q 003710 451 IATLSDSMQIHSLITK 466 (801)
Q Consensus 451 ~~~~~~a~~i~~~~~~ 466 (801)
.+++..|...+....+
T Consensus 154 l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 154 LGNLRDANELFDTFTS 169 (260)
T ss_dssp TTBHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 6677777776665553
No 419
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=33.85 E-value=6e+02 Score=26.98 Aligned_cols=64 Identities=14% Similarity=0.099 Sum_probs=49.3
Q ss_pred CcchHHHHHH---HHHhcCCHHHHHHHHHHHHccCCC-CchhHHHHHHHHH-HcCCchHHHHHHHHHHH
Q 003710 597 TARIWGALLT---ASRKNNDIVSAEFAARHVLSSAQD-NTGCYVLLSNMYA-EAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 597 ~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~-~~g~~~~a~~~~~~m~~ 660 (801)
|...|.+|.. .+.+.|-+.-|.+..+.++.++|. |+-.-...++.|+ +++.++-..++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4555555544 577889999999999999999999 8877778888774 56777777777776554
No 420
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=33.76 E-value=60 Score=32.89 Aligned_cols=44 Identities=30% Similarity=0.336 Sum_probs=32.5
Q ss_pred CCccc-HHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHH
Q 003710 198 RDTVS-WNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISA 241 (801)
Q Consensus 198 ~d~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 241 (801)
+|..+ ||.-|...++.||+++|+.++++.++.|+.--..||...
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 34444 678899999999999999999999888876555555433
No 421
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.69 E-value=1.5e+02 Score=20.63 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=21.1
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003710 506 AIHGLGKISIQLFSEMREKGIKPNESTFVSLLS 538 (801)
Q Consensus 506 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 538 (801)
.+.|...++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345556666777777777777666666655543
No 422
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=33.63 E-value=5.3e+02 Score=26.26 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHHH-----HhCCCCchHHH
Q 003710 406 WNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLIT-----KLGLVSNIYIS 476 (801)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~-----~~g~~~~~~~~ 476 (801)
.+.....|..+|.+.+|.++-+..+.-. +.+...+-.++..++..|+--.+..-++.+. +.|+..+..++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3444566777788888888777776532 3355566667777777777555555554443 34655554443
No 423
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.24 E-value=8.3e+02 Score=28.41 Aligned_cols=176 Identities=18% Similarity=0.303 Sum_probs=99.4
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHhCCCCCC----------hhhHHHHHHHHhccCChHHHHHHHHHHHHh-C-CCCchH
Q 003710 204 NSMIGGYCSVGDGVSSLVFFKEMQNCGLRYD----------RFSLISALGAISIEGCLKIGKEIHCQVIKS-G-LEMDVM 271 (801)
Q Consensus 204 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~-g-~~~~~~ 271 (801)
..++-.|-...+++..+++.+.++.. || .+.|...++--.+.|+-+.|..+.-.+++. | ..||
T Consensus 205 ~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD-- 279 (1226)
T KOG4279|consen 205 SNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD-- 279 (1226)
T ss_pred HHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc--
Confidence 34445566666777777777777653 32 234555555556677777777776666554 2 2343
Q ss_pred HHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChh---hHHHHHHHHh
Q 003710 272 VQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCI---TIINLLPSCT 348 (801)
Q Consensus 272 ~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~---t~~~ll~~~~ 348 (801)
+||-||++ ++.|. +-+.|...+..+.|.+.|++.-+ +.|+.. -+..+|.+..
T Consensus 280 -------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 280 -------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred -------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhh
Confidence 46667753 33331 11234445566778888887763 466654 3555555443
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003710 349 KLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQD 428 (801)
Q Consensus 349 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 428 (801)
+. ++...++ ..-| -.|-..++|.|.++.-...++ +.+| ..+-.-.+++.+|++.-+.
T Consensus 335 ~~--Fens~El----q~Ig--------mkLn~LlgrKG~leklq~YWd------V~~y---~~asVLAnd~~kaiqAae~ 391 (1226)
T KOG4279|consen 335 EH--FENSLEL----QQIG--------MKLNSLLGRKGALEKLQEYWD------VATY---FEASVLANDYQKAIQAAEM 391 (1226)
T ss_pred hh--ccchHHH----HHHH--------HHHHHHhhccchHHHHHHHHh------HHHh---hhhhhhccCHHHHHHHHHH
Confidence 22 2222222 1111 223345678888887777664 3232 3344556788888888888
Q ss_pred HhCC
Q 003710 429 LWSE 432 (801)
Q Consensus 429 m~~~ 432 (801)
|.+.
T Consensus 392 mfKL 395 (1226)
T KOG4279|consen 392 MFKL 395 (1226)
T ss_pred Hhcc
Confidence 8763
No 424
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=32.94 E-value=2.5e+02 Score=22.72 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=25.9
Q ss_pred ccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003710 384 GSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAM 423 (801)
Q Consensus 384 k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 423 (801)
..|+.+.|+.+++.++ +..-.|...+.++-..|.-+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4466777777777777 66666777777777666655443
No 425
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=32.84 E-value=4.5e+02 Score=25.14 Aligned_cols=129 Identities=9% Similarity=0.075 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHH
Q 003710 494 DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCI 572 (801)
Q Consensus 494 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 572 (801)
.+...+.++.-+...|+++.|-+.|.-++... ..|..+ .+.-|.+++..-. -.+. ..-+..|
T Consensus 40 Hl~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~------------~W~iG~eIL~~~~----~~~~~~~fl~~l 102 (199)
T PF04090_consen 40 HLRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRS------------LWGIGAEILMRRG----EQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHh------------cchHHHHHHHcCC----CcchHHHHHHHH
Confidence 34556788888899999999999999888743 334332 2444444443221 1111 1445555
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--------CCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCC---CchhHH
Q 003710 573 IDLLGRIGNLDQAKRFIEEMPS--------APT---ARIWGALLTASRKNNDIVSAEFAARHVLSS--AQD---NTGCYV 636 (801)
Q Consensus 573 i~~~~~~g~~~eA~~~~~~m~~--------~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~---~~~~~~ 636 (801)
+..|.......+........|. .|. ...|..|+....+....+.+.++.+++-++ .|+ ++..|.
T Consensus 103 ~~~y~~~~~~~~~~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~ 182 (199)
T PF04090_consen 103 ISFYPSRKAFNQYYNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWF 182 (199)
T ss_pred HHHHHHhhhccchhhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHH
Confidence 5555544433333222211111 121 123444444443344455677777777663 454 444444
Q ss_pred HHH
Q 003710 637 LLS 639 (801)
Q Consensus 637 ~l~ 639 (801)
..+
T Consensus 183 i~~ 185 (199)
T PF04090_consen 183 IRG 185 (199)
T ss_pred HHH
Confidence 333
No 426
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.82 E-value=67 Score=23.93 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003710 498 WNVIIMAYAIHGLGKISIQLFSEMRE 523 (801)
Q Consensus 498 ~~~li~~~~~~g~~~~A~~l~~~m~~ 523 (801)
.-.+|.||.+.|++++|.++.+++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34578889999999999999888765
No 427
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.79 E-value=2.5e+02 Score=24.49 Aligned_cols=42 Identities=10% Similarity=0.162 Sum_probs=33.1
Q ss_pred HHHHHHHHHHc--cCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 003710 616 SAEFAARHVLS--SAQDNTGCYVLLSNMYAEAGRWEDVEQIKAI 657 (801)
Q Consensus 616 ~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 657 (801)
.+..+++.+.. +.-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66777777764 4556778899999999999999999999864
No 428
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=32.61 E-value=3.3e+02 Score=30.29 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHH
Q 003710 304 WNAMVGGYVVNAHFLESFSCLRKML 328 (801)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~l~~~m~ 328 (801)
-..++.-|.+.++.++|+.++..|-
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 3446666777777777777776663
No 429
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=32.03 E-value=58 Score=31.48 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=34.1
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 003710 577 GRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDN 631 (801)
Q Consensus 577 ~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 631 (801)
.+.|+.+.|.+++++... ......|-.+...--+.|+.+.|.+.+++.++++|+|
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345555666666665543 1234556666666666777777777777777777755
No 430
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=31.72 E-value=7e+02 Score=27.07 Aligned_cols=26 Identities=8% Similarity=0.020 Sum_probs=13.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHhcCC
Q 003710 374 LETALIDMYAGSGALKMTEKLFGSMI 399 (801)
Q Consensus 374 ~~~~Li~~y~k~g~~~~A~~~f~~~~ 399 (801)
+-...+.+..+.|+.....-+.+.|.
T Consensus 254 vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 254 TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 34445555556666555555555444
No 431
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.50 E-value=7.7e+02 Score=27.73 Aligned_cols=132 Identities=14% Similarity=0.100 Sum_probs=0.0
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCC---------CC-hHHHHHHHHHHHhcCCHHHHHHHHHh------------------
Q 003710 540 CSISGMVDEGWNYFDSMRKDYGIV---------PG-IEHYGCIIDLLGRIGNLDQAKRFIEE------------------ 591 (801)
Q Consensus 540 ~~~~g~~~~a~~~~~~m~~~~~~~---------p~-~~~~~~li~~~~~~g~~~eA~~~~~~------------------ 591 (801)
+.++..++++.+.|...+..+... |= +.+.-.|.+++-.+|+.+-|.+++++
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred ---CCC--CCCcchHHHHHHH---HHhcCCHHHHHHHHHHHHccCCC-CchhHHHHHHHH-HHcCCchHHHHHHHHH-HH
Q 003710 592 ---MPS--APTARIWGALLTA---SRKNNDIVSAEFAARHVLSSAQD-NTGCYVLLSNMY-AEAGRWEDVEQIKAIM-EK 660 (801)
Q Consensus 592 ---m~~--~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y-~~~g~~~~a~~~~~~m-~~ 660 (801)
|+. .-|...|.+|... ..+.|-+.-|.+..+.++.++|. |+.....++++| .++..+.=..++++.. ..
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q ss_pred CCCccCCcccE
Q 003710 661 EGLKKTTGCSM 671 (801)
Q Consensus 661 ~g~~~~~~~s~ 671 (801)
..+.-.|.+.+
T Consensus 408 n~l~~~PN~~y 418 (665)
T KOG2422|consen 408 NKLSQLPNFGY 418 (665)
T ss_pred ccHhhcCCchH
No 432
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=31.48 E-value=14 Score=30.08 Aligned_cols=12 Identities=42% Similarity=1.104 Sum_probs=9.0
Q ss_pred cccccccCCCCC
Q 003710 789 HFRNGCCSCGDY 800 (801)
Q Consensus 789 ~f~~g~csc~~~ 800 (801)
.-+.|.|||.||
T Consensus 46 Il~~gfCSCp~~ 57 (117)
T COG5431 46 ILEGGFCSCPDF 57 (117)
T ss_pred EEEcCcccCHHH
Confidence 345678999886
No 433
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.99 E-value=1.4e+02 Score=24.26 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=33.1
Q ss_pred HhcCCHHHHHHHHHHHHccCCC----C-----chhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 609 RKNNDIVSAEFAARHVLSSAQD----N-----TGCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 609 ~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
.+.||+..|.+.+.+.++.... . ......++.++...|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456666665555555543211 1 12345678888999999999998887754
No 434
>PRK14135 recX recombination regulator RecX; Provisional
Probab=30.91 E-value=5.6e+02 Score=25.68 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=44.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHhCC
Q 003710 515 IQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGN-LDQAKRFIEEMP 593 (801)
Q Consensus 515 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-~~eA~~~~~~m~ 593 (801)
.++-.++.+.|+.++.+. .++..+...+..+.+..+.+.....+.-.|......-+...+.+.|- .+...++++.+.
T Consensus 126 ~~I~~kL~~kGi~~~~Ie--~~l~~l~~~~~~d~a~~~~~k~~~~~~~~~~~~~k~Ki~~~L~rkGf~~~~I~~~l~~~~ 203 (263)
T PRK14135 126 RVIKQKLLQKGIEDEIIE--EALSEYTEEDQIEVAQKLAEKLLKKYQKLPFKALKQKIIQSLLTKGFSYEVIKAALEELD 203 (263)
T ss_pred HHHHHHHHHcCCCHHHHH--HHHHhCChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHcc
Confidence 467777888887665443 33444444455566665555544433222323344556666777774 445566677664
Q ss_pred CCCC
Q 003710 594 SAPT 597 (801)
Q Consensus 594 ~~p~ 597 (801)
...+
T Consensus 204 ~e~d 207 (263)
T PRK14135 204 LEQD 207 (263)
T ss_pred cCCC
Confidence 3333
No 435
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=30.89 E-value=1.5e+03 Score=30.62 Aligned_cols=64 Identities=9% Similarity=0.017 Sum_probs=53.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 003710 597 TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG 662 (801)
Q Consensus 597 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 662 (801)
-..+|......++..|.++.|..+.-++.+.. -+..+.-.+......|+-..|..+++...+..
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 35789999999999999999988777766665 35678889999999999999999998877653
No 436
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=30.85 E-value=3.5e+02 Score=30.15 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=19.4
Q ss_pred cHHHHHHHHHcCCChhhHHHHHHHHH
Q 003710 202 SWNSMIGGYCSVGDGVSSLVFFKEMQ 227 (801)
Q Consensus 202 ~~~~li~~~~~~g~~~~A~~l~~~m~ 227 (801)
.-..++.-|.+.++.++|+.++..|.
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 34457778888888888888887774
No 437
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=30.58 E-value=29 Score=27.36 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=35.6
Q ss_pred CHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 581 NLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 581 ~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
.++.|.+.+++... +-..|+.+.|...|++.++.--.-..+-+. .....-.|++|.++.++|+.
T Consensus 4 ~~~~A~~~I~kaL~-------------~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~---~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 4 YYKQAFEEISKALR-------------ADEWGDKEQALAHYRKGLRELEEGIAVPVP---SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred HHHHHHHHHHHHhh-------------hhhcCCHHHHHHHHHHHHHHHHHHcCCCCC---cccccHHHHHHHHHHHHHHH
Confidence 45667777666441 112366777777776665421000000000 23455679999999999976
No 438
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.50 E-value=2.6e+02 Score=26.22 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=23.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHH
Q 003710 572 IIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTA 607 (801)
Q Consensus 572 li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~ 607 (801)
.+-.|.+.|.+++|.+++++.-..|+.......+..
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~ 152 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLM 152 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 345677888888888888877666665444443333
No 439
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.32 E-value=5.7e+02 Score=25.57 Aligned_cols=203 Identities=12% Similarity=0.109 Sum_probs=105.5
Q ss_pred CChHHHHHHHhhcCC--CCc-----ccHHHHHHHHHhCCChhHHHHHHHHHHhCC--CC--CCChhhHHHHHHHHhccCC
Q 003710 284 GVVDYAERLFNMIFP--RNI-----VAWNAMVGGYVVNAHFLESFSCLRKMLEDD--NL--NPDCITIINLLPSCTKLGA 352 (801)
Q Consensus 284 g~~~~A~~lf~~m~~--~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--g~--~pd~~t~~~ll~~~~~~g~ 352 (801)
...++|..-|.++.+ +.- -+.-.||..+.+.|++++.++.|.+|..-- .+ .-+..+.++++.-.+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355666666655522 111 223346777777788887777777775310 11 1233456666666665555
Q ss_pred hHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHccCChHHHHHHHhcCCC------------CC---HHHHHHHHHH
Q 003710 353 LLEGKSIHGYAIRK-----GFLPNVALETALIDMYAGSGALKMTEKLFGSMIE------------KN---LVSWNAMIAA 412 (801)
Q Consensus 353 ~~~a~~~~~~~~~~-----g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~------------~~---~~~~~~li~~ 412 (801)
.+.-..+++.-++. +-..-..+-+-|...|...|.+....++++++.. ++ ...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 55555554433321 1111122334556667666777777777666521 11 2345556677
Q ss_pred HHHcCCHHHHHHHHHHHhCCC-CCCCHhhHHHHHHHHH-----hhcChhhHHH-HHHHHH---HhCCCC--chHHHHHHH
Q 003710 413 YVRNGQNREAMELFQDLWSEP-LKPDAMTFASILPAYA-----EIATLSDSMQ-IHSLIT---KLGLVS--NIYISNSIV 480 (801)
Q Consensus 413 ~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~-----~~~~~~~a~~-i~~~~~---~~g~~~--~~~~~~~li 480 (801)
|....+-.+-..++++...-. .-|... ...+|+-|. +.|.+++|.. +|+... +.|-+. ...-|-.|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 777777777777777664322 233333 334455554 3455655543 333333 334222 223455667
Q ss_pred HHHHhcC
Q 003710 481 YMYAKCG 487 (801)
Q Consensus 481 ~~y~~~g 487 (801)
+|+.+.|
T Consensus 280 NMLmkS~ 286 (440)
T KOG1464|consen 280 NMLMKSG 286 (440)
T ss_pred HHHHHcC
Confidence 7777766
No 440
>PHA03100 ankyrin repeat protein; Provisional
Probab=30.14 E-value=7.8e+02 Score=27.13 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=7.3
Q ss_pred hcCCchHHHHhhcc
Q 003710 181 KLGCVECAERMFDE 194 (801)
Q Consensus 181 ~~g~~~~A~~~f~~ 194 (801)
+.|..+-+..+++.
T Consensus 117 ~~~~~~iv~~Ll~~ 130 (480)
T PHA03100 117 KSNSYSIVEYLLDN 130 (480)
T ss_pred ccChHHHHHHHHHc
Confidence 55555555555543
No 441
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.05 E-value=5.5e+02 Score=25.35 Aligned_cols=105 Identities=13% Similarity=0.037 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHH
Q 003710 510 LGKISIQLFSEMREKGIKPNESTF-VSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKR 587 (801)
Q Consensus 510 ~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~ 587 (801)
++..|+..|.+.+. +.|+..+| ..=+-.+.+..+++.+.+=-.... .+.|+ +...--+...+.....+++|+.
T Consensus 25 ~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 25 RYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 34444554444444 45555443 222233333444444333222222 34454 2222233444444444444444
Q ss_pred HHHhC-------CCCCCcchHHHHHHHHHhcCCHHHHHH
Q 003710 588 FIEEM-------PSAPTARIWGALLTASRKNNDIVSAEF 619 (801)
Q Consensus 588 ~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~ 619 (801)
.+.+. +..+...+|..|..+-...=++.+.++
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~R 138 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKR 138 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHH
Confidence 44333 333445566666555433333333333
No 442
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=29.81 E-value=3.8e+02 Score=23.43 Aligned_cols=105 Identities=14% Similarity=0.228 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003710 441 FASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSE 520 (801)
Q Consensus 441 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~ 520 (801)
+...++.+.+..-.-.+.++...+....-.|...+..-+-..-..|.+.++- +.+.....-.-..++.
T Consensus 21 ~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~------------~~q~R~VRlvcvfl~s 88 (126)
T PF10155_consen 21 FKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDK------------YMQNRLVRLVCVFLQS 88 (126)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhccc------------ccccchhhhHHHHHHH
Confidence 4444444455555555555555555544444433333222222222222211 1122222223345566
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 003710 521 MREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMR 557 (801)
Q Consensus 521 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 557 (801)
+++.++.-....+..+=.-|..-.++.||..+|+.++
T Consensus 89 Lir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 89 LIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 6666665555555555555666667778877777653
No 443
>PF14376 Haem_bd: Haem-binding domain
Probab=29.53 E-value=18 Score=32.16 Aligned_cols=10 Identities=50% Similarity=1.049 Sum_probs=7.8
Q ss_pred cccCCchhhh
Q 003710 758 TRICEDCHSA 767 (801)
Q Consensus 758 ~r~c~dch~~ 767 (801)
-+-|.||||-
T Consensus 41 ~~~CydCHSn 50 (137)
T PF14376_consen 41 KNSCYDCHSN 50 (137)
T ss_pred HccccccCCC
Confidence 3579999974
No 444
>PRK13342 recombination factor protein RarA; Reviewed
Probab=29.53 E-value=7.6e+02 Score=26.79 Aligned_cols=167 Identities=11% Similarity=0.018 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHhC---CC-CCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHH
Q 003710 215 DGVSSLVFFKEMQNC---GL-RYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAE 290 (801)
Q Consensus 215 ~~~~A~~l~~~m~~~---g~-~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 290 (801)
..++...+++..... |+ ..+......++..+ .|+...+..+++.+...+-..+. .++..+.
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~-------------~~v~~~~ 216 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITL-------------ELLEEAL 216 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH-------------HHHHHHH
Q ss_pred HHHhhcCCCCcccHHHHHHHHHhC---CChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCC-----hHHHHHHHHH
Q 003710 291 RLFNMIFPRNIVAWNAMVGGYVVN---AHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGA-----LLEGKSIHGY 362 (801)
Q Consensus 291 ~lf~~m~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~-----~~~a~~~~~~ 362 (801)
........++...+..++.++.+. ++.+.|+..+..|.+. |..|....-..+..++-..|. +..+...++.
T Consensus 217 ~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~-G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~ 295 (413)
T PRK13342 217 QKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEA-GEDPLFIARRLVIIASEDIGLADPNALQVAVAAADA 295 (413)
T ss_pred hhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q ss_pred HHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhc
Q 003710 363 AIRKGFLPNVALETALIDMYAGSGALKMTEKLFGS 397 (801)
Q Consensus 363 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 397 (801)
....|++-......-.+-.++.+-+-..+...++.
T Consensus 296 ~~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~ 330 (413)
T PRK13342 296 VERIGMPEGRIALAQAVIYLALAPKSNAAYTAINA 330 (413)
T ss_pred HHHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHH
No 445
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=29.48 E-value=3.7e+02 Score=29.42 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=36.3
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHHCCCccCCc
Q 003710 608 SRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGLKKTTG 668 (801)
Q Consensus 608 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~ 668 (801)
+....++..+.+-.+.+....-+.+....+-++.+.-.|++..|.+++.. .|+.+.+|
T Consensus 216 llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~---sni~~~~g 273 (696)
T KOG2471|consen 216 LLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLV---SNIHKEAG 273 (696)
T ss_pred HHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHh---cccccccC
Confidence 33334444454444444444445556666779999999999999988754 34444444
No 446
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=29.42 E-value=18 Score=25.98 Aligned_cols=10 Identities=40% Similarity=0.856 Sum_probs=7.8
Q ss_pred ccCCchhhhh
Q 003710 759 RICEDCHSAV 768 (801)
Q Consensus 759 r~c~dch~~~ 768 (801)
-||+|||.--
T Consensus 21 YiCgdC~~en 30 (62)
T KOG3507|consen 21 YICGDCGQEN 30 (62)
T ss_pred EEeccccccc
Confidence 4899999643
No 447
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=29.02 E-value=6.6e+02 Score=25.91 Aligned_cols=80 Identities=15% Similarity=0.161 Sum_probs=52.0
Q ss_pred HHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHH---hCCCCCCcchHHHHHHHHH---hcCCHHHHHH
Q 003710 547 DEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIE---EMPSAPTARIWGALLTASR---KNNDIVSAEF 619 (801)
Q Consensus 547 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~---~m~~~p~~~~~~~ll~~~~---~~g~~~~a~~ 619 (801)
.+....++.+.+.|++.|+ .++.--.......+|++..|.+++- .....|+....++|-+-++ -..+++.|.+
T Consensus 109 k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~e 188 (432)
T KOG2758|consen 109 KDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALE 188 (432)
T ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHH
Confidence 4457788888899999998 6666677777888999999887643 3333555534444333222 2356777766
Q ss_pred HHHHHHc
Q 003710 620 AARHVLS 626 (801)
Q Consensus 620 ~~~~~~~ 626 (801)
-+.++.+
T Consensus 189 dL~rLre 195 (432)
T KOG2758|consen 189 DLTRLRE 195 (432)
T ss_pred HHHHHHH
Confidence 5555443
No 448
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=28.97 E-value=24 Score=19.35 Aligned_cols=9 Identities=33% Similarity=0.516 Sum_probs=5.9
Q ss_pred hhhhhhhhc
Q 003710 764 CHSAVKKIS 772 (801)
Q Consensus 764 ch~~~k~~s 772 (801)
-|+++|+||
T Consensus 12 lhe~ikli~ 20 (23)
T PF08225_consen 12 LHEVIKLIN 20 (23)
T ss_pred HHHHHHHHh
Confidence 466677665
No 449
>PHA03100 ankyrin repeat protein; Provisional
Probab=28.87 E-value=8.2e+02 Score=26.97 Aligned_cols=110 Identities=12% Similarity=0.061 Sum_probs=49.3
Q ss_pred HHhcCCchHHHHhhccCC---CCCcccHHHHHHHHH-cCCChhhHHHHHHHHHhCCCCCChhh--HHHHHHHHhccC--C
Q 003710 179 YMKLGCVECAERMFDEMP---VRDTVSWNSMIGGYC-SVGDGVSSLVFFKEMQNCGLRYDRFS--LISALGAISIEG--C 250 (801)
Q Consensus 179 y~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~~--~ 250 (801)
.+..|..+-+.-+++.-. .+|...++.|..+.. ..|+. ++++.+.+.|..++... -.+.+..++..+ +
T Consensus 80 a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~----~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 155 (480)
T PHA03100 80 YNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSY----SIVEYLLDNGANVNIKNSDGENLLHLYLESNKID 155 (480)
T ss_pred HHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChH----HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCCh
Confidence 444555555555544322 223333444444443 44443 34444555665553321 123344444444 3
Q ss_pred hHHHHHHHHHHHHhCCCCchH--HHHHHHHHHhcCCChHHHHHHHhhc
Q 003710 251 LKIGKEIHCQVIKSGLEMDVM--VQTSLVDMYGKCGVVDYAERLFNMI 296 (801)
Q Consensus 251 ~~~a~~l~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~lf~~m 296 (801)
.+ +.+.+++.|..++.. ...+-+...++.|+.+-+..+++.-
T Consensus 156 ~~----iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g 199 (480)
T PHA03100 156 LK----ILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNG 199 (480)
T ss_pred HH----HHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 33 344445556544322 1223445555566666555555543
No 450
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=28.60 E-value=3.4e+02 Score=30.97 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcC
Q 003710 321 FSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSM 398 (801)
Q Consensus 321 ~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 398 (801)
....+..... --..+......++..|.+.|-.+.+..+...+-..-+. ..-|..-+..+.++|+......+-+.+
T Consensus 390 ~~~i~~lL~~-~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 390 RERIEELLPR-VPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHHGGG-----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhh-CCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444433 12233445566677777777777777776655443221 223455556667777766655554443
No 451
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.45 E-value=1.2e+02 Score=22.67 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 003710 529 NESTFVSLLSSCSISGMVDEGWNYFDSMRK 558 (801)
Q Consensus 529 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 558 (801)
|-.--..++.++...|++++|.++.+.+..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444566677777777777777666654
No 452
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=28.01 E-value=9.5e+02 Score=27.42 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=29.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q 003710 374 LETALIDMYAGSGALKMTEKLFGSMIEKN-LVSWNAMIAAYVRNGQNREAMELFQDLWSEP 433 (801)
Q Consensus 374 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 433 (801)
.++.|+..... =+.+.-..+++++.. . ...|..++++....|-.....-+.+.+....
T Consensus 312 ~f~~lv~~lR~-~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~ 370 (574)
T smart00638 312 KFLRLVRLLRT-LSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKK 370 (574)
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 34444444332 234444445544433 2 5667777777777776554444444444433
No 453
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=27.32 E-value=1.2e+03 Score=28.45 Aligned_cols=130 Identities=5% Similarity=-0.032 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-CC-CC---------hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcc
Q 003710 531 STFVSLLSSCSISGMVDEGWNYFDSMRKDYG-IV-PG---------IEHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTAR 599 (801)
Q Consensus 531 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~~-p~---------~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~ 599 (801)
.+...+.-..+..|.++-+.+..+.+.+.+. +. |. ..+|-.=+.++.....+++|.+.+...+..--..
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (932)
T PRK13184 689 RALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTLILY 768 (932)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHHHHH
Confidence 3444444445667888888777776654221 11 11 1123333556666667888887776654211122
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc---hhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 600 IWGALLTASRKNNDIVSAEFAARHVLSSAQDNT---GCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 600 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
.+..+..-+..+++.+.-..+.+.+-...+... ......+++|.-..+|++|-++++....
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (932)
T PRK13184 769 AFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPL 832 (932)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCCh
Confidence 334444455666777766666666655443322 2334567788888999999998865543
No 454
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=27.27 E-value=1.5e+02 Score=28.14 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=31.3
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 003710 542 ISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMP 593 (801)
Q Consensus 542 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~ 593 (801)
...+.+......+.+.+.....|+...|..++.++...|+.++|.+..+++.
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455554444444444444556666677777777777777777766666654
No 455
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=26.95 E-value=3.9e+02 Score=22.61 Aligned_cols=79 Identities=15% Similarity=0.118 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q 003710 352 ALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWS 431 (801)
Q Consensus 352 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 431 (801)
..++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||.+.|-++-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45666667666666553 222222233445667788888855545556678887766543 466777777777777765
Q ss_pred CC
Q 003710 432 EP 433 (801)
Q Consensus 432 ~g 433 (801)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 456
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=26.64 E-value=1.2e+03 Score=27.97 Aligned_cols=179 Identities=18% Similarity=0.123 Sum_probs=84.7
Q ss_pred HHcCCHHHHHHHHHHHhCCCCCCC----Hh---hHHHHHH-HHHhhcChhhHHHHHHHHHH----hCCCCchHHHHHHHH
Q 003710 414 VRNGQNREAMELFQDLWSEPLKPD----AM---TFASILP-AYAEIATLSDSMQIHSLITK----LGLVSNIYISNSIVY 481 (801)
Q Consensus 414 ~~~g~~~~A~~l~~~m~~~g~~pd----~~---t~~~ll~-a~~~~~~~~~a~~i~~~~~~----~g~~~~~~~~~~li~ 481 (801)
....++.+|..+..+....--.|+ .. .++.+-. .....|+++.+..+-+.... .-..+.+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 345677777777766643322222 11 2222211 11235666777666665543 233345555666666
Q ss_pred HHHhcCCccccc-------------hH---HHHHHHHH--HHHHcCCHHH--HHHHHHHHHHC--CCCCC----HHHHHH
Q 003710 482 MYAKCGDLQTAR-------------DV---VSWNVIIM--AYAIHGLGKI--SIQLFSEMREK--GIKPN----ESTFVS 535 (801)
Q Consensus 482 ~y~~~g~~~~A~-------------d~---~~~~~li~--~~~~~g~~~~--A~~l~~~m~~~--g~~p~----~~t~~~ 535 (801)
+..-.|+++.|. |+ ..|..+.. .+-.+|+... ...-|...... +-+|- ..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 666667777765 11 13333322 2334452222 22223222221 11121 234555
Q ss_pred HHHHHhcc-CCHHHHHHHHHHhHHhcCCCCChHHH--HHHHHHHHhcCCHHHHHHHHHhCC
Q 003710 536 LLSSCSIS-GMVDEGWNYFDSMRKDYGIVPGIEHY--GCIIDLLGRIGNLDQAKRFIEEMP 593 (801)
Q Consensus 536 ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~~~~~--~~li~~~~~~g~~~eA~~~~~~m~ 593 (801)
++.++.+. +...++..-++.-. .+...|-..-+ .+|+.++...|++++|...++++.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~-~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGS-VYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhh-hcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 55555542 22223333222221 12223322222 367788888999999988887764
No 457
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.40 E-value=2.6e+02 Score=31.68 Aligned_cols=34 Identities=21% Similarity=0.103 Sum_probs=17.9
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 003710 332 NLNPDCITIINLLPSCTKLGALLEGKSIHGYAIR 365 (801)
Q Consensus 332 g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 365 (801)
.+.-|..||..++.+..+..+-..+.-++...+.
T Consensus 98 ~ln~d~~t~all~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 98 RLNGDSLTYALLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred hcCCcchHHHHHHHhhcChHhHHhccHHHHHHHH
Confidence 3455666776666665554444444444444433
No 458
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.27 E-value=1.2e+02 Score=25.72 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=13.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 003710 408 AMIAAYVRNGQNREAMELFQDL 429 (801)
Q Consensus 408 ~li~~~~~~g~~~~A~~l~~~m 429 (801)
.++..|...|+.++|...++++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3455666666777777766665
No 459
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=26.15 E-value=1.2e+03 Score=27.90 Aligned_cols=91 Identities=14% Similarity=0.097 Sum_probs=48.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHH-----HHHHHhcCCHHHHHHHHHhCCC------CCCcchHH
Q 003710 535 SLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCI-----IDLLGRIGNLDQAKRFIEEMPS------APTARIWG 602 (801)
Q Consensus 535 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l-----i~~~~~~g~~~eA~~~~~~m~~------~p~~~~~~ 602 (801)
.|.......|++++|....+++..- ...++ ..-|.++ .......|+.++|.....+-.. .--...|.
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~~~~~~~~~~~~~~r 701 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSGDPDKANAHFPQLQWR 701 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhccCchhhhhhccccccc
Confidence 4556666788899988888887654 22332 1222222 2234567888888777766321 11122333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHc
Q 003710 603 ALLTASRKNNDIVSAEFAARHVLS 626 (801)
Q Consensus 603 ~ll~~~~~~g~~~~a~~~~~~~~~ 626 (801)
.+...-...|-..+++.....+.+
T Consensus 702 ~i~~~~~~Lg~~~eae~al~~l~~ 725 (894)
T COG2909 702 LIAREQILLGILLEAELALDELAS 725 (894)
T ss_pred ccchHHHHHhhhhHHHHHHHHHhh
Confidence 333344444555555555555443
No 460
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=25.99 E-value=3.6e+02 Score=21.83 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHH
Q 003710 255 KEIHCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLES 320 (801)
Q Consensus 255 ~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A 320 (801)
.+++..+++.|+-.+ .....+-.+-...|+.+.|+++++.++ +..-.+...+.++-+.|.-+-|
T Consensus 22 ~~v~d~ll~~~ilT~-~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLLTE-EDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCCCH-HHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 455555555553222 122222222224577777777777777 7677777777777666654443
No 461
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=25.51 E-value=1e+03 Score=26.91 Aligned_cols=120 Identities=13% Similarity=0.042 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCcchHHHHHHH-
Q 003710 531 STFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTA- 607 (801)
Q Consensus 531 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~- 607 (801)
.+|...+.--...|+.+...-+|+...- ...-=.+.|--.+.-.-..|+.+-|..++..... .|+......+-++
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3555555555555666666665555432 0101133444444444444666655555443321 2222222222222
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHH
Q 003710 608 SRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVE 652 (801)
Q Consensus 608 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 652 (801)
+-..||...|..+++.+.+--|.....-..-+++..+.|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 334567777777777666544655555455566666666666666
No 462
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=25.47 E-value=3.2e+02 Score=22.38 Aligned_cols=34 Identities=3% Similarity=-0.083 Sum_probs=27.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhcCccccCCccc
Q 003710 685 DRSHSKTYLIYNVLDILLRKIGEDFYIHNVSKFS 718 (801)
Q Consensus 685 ~~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~ 718 (801)
...||....+.....++.....+.|..|....-+
T Consensus 57 ~~~nP~~~~~~~~~~~~~~l~~~lGLtP~sR~kl 90 (100)
T PF05119_consen 57 PKKNPAVSILNKAMKQMRSLASELGLTPASRAKL 90 (100)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhc
Confidence 5789999888788888888889999998754433
No 463
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=25.18 E-value=4.2e+02 Score=23.11 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=32.2
Q ss_pred HHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003710 547 DEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEE 591 (801)
Q Consensus 547 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~ 591 (801)
++..++|..|.+. +|--. ..-|......+-..|++.+|.++++.
T Consensus 80 ~dp~~if~~L~~~-~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSK-GIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3356678877765 77665 56677778888888888888888763
No 464
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=25.18 E-value=6.5e+02 Score=24.58 Aligned_cols=93 Identities=19% Similarity=0.264 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 003710 498 WNVIIMAYAIHGLGKISIQLFSEMREKGIKP---NESTF--VSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCI 572 (801)
Q Consensus 498 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 572 (801)
.|.||--|..+..+.+|.+.|.. +.|+.| |..++ ..-+......|++++|++..+.+... -+.-|...+-.|
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~L 105 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHH
Confidence 45666666666666666676643 556766 23333 34566778899999999998877543 333443333322
Q ss_pred HH----HHHhcCCHHHHHHHHHhCC
Q 003710 573 ID----LLGRIGNLDQAKRFIEEMP 593 (801)
Q Consensus 573 i~----~~~~~g~~~eA~~~~~~m~ 593 (801)
.. =+.|+|..++|+++.+.-.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 22 2468899999999988643
No 465
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=25.16 E-value=4.1e+02 Score=30.19 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=13.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhC
Q 003710 408 AMIAAYVRNGQNREAMELFQDLWS 431 (801)
Q Consensus 408 ~li~~~~~~g~~~~A~~l~~~m~~ 431 (801)
++..+|..+|++..+.++++....
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 455555666666655555555543
No 466
>PRK14015 pepN aminopeptidase N; Provisional
Probab=24.52 E-value=1.3e+03 Score=27.97 Aligned_cols=125 Identities=14% Similarity=0.091 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCcchHHHHHH
Q 003710 529 NESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIEEMPSA-PTARIWGALLT 606 (801)
Q Consensus 529 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p~~~~~~~ll~ 606 (801)
|..--.+.|.++.+.+.. +....++..-+++.-.|- ..-|-.+...--..+-++...++.+.-.+. .++--.++|+.
T Consensus 713 ~mtd~~~al~~l~~~~~~-~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral~~ 791 (875)
T PRK14015 713 NMTDRLAALSALVNADLP-ERDEALADFYDRWKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSLIG 791 (875)
T ss_pred CHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHH
Confidence 333344455555554442 333444444444444454 333433333222222233333443332222 34556789999
Q ss_pred HHHhcCCH------HHHH-HHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003710 607 ASRKNNDI------VSAE-FAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQI 654 (801)
Q Consensus 607 ~~~~~g~~------~~a~-~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 654 (801)
+++..+-. ..|. -+.+.++++++-|+.+-..|+..+.+=.++++.++.
T Consensus 792 ~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~ 846 (875)
T PRK14015 792 AFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQA 846 (875)
T ss_pred HHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHHH
Confidence 98654322 3344 466788899999999988999999998888877663
No 467
>PF01147 Crust_neurohorm: Crustacean CHH/MIH/GIH neurohormone family; InterPro: IPR001166 Arthropod express a family of neuropeptides [] which so far consist of the following types of neurohormones: Crustacean hyperglycemic hormone (CHH). CHH is primarily involved in blood sugar regulation, but also plays a role in the control of molting and reproduction. Molt-inhibiting hormone (MIH). MIH inhibits Y-organs where molting hormone (ecdysteroid) is secreted. A molting cycle is initiated when MIH secretion diminishes or stops. Gonad-inhibiting hormone (GIH), also known as vitellogenesis-inhibiting hormone (VIH) because of its role in inhibiting vitellogenesis in female animals. Mandibular organ-inhibiting hormone (MOIH). MOIH represses the synthesis of methyl farnesoate, the precursor of insect juvenile hormone III in the mandibular organ. Ion transport peptide (ITP) from locust. ITP stimulates salt and water reabsorption and inhibits acid secretion in the ileum of the locust. Caenorhabditis elegans hypothetical protein ZC168.2. These neurohormones are peptides of 70 to 80 residues which are processed from larger size precursors. They contain six conserved cysteines that are involved in disulphide bonds, as shown in the following schematic representation. ; GO: 0005184 neuropeptide hormone activity, 0005576 extracellular region; PDB: 1J0T_A.
Probab=24.12 E-value=15 Score=28.22 Aligned_cols=14 Identities=29% Similarity=0.864 Sum_probs=11.1
Q ss_pred eccccCCchhhhhh
Q 003710 756 NNTRICEDCHSAVK 769 (801)
Q Consensus 756 kn~r~c~dch~~~k 769 (801)
|--|||.|||+...
T Consensus 18 kldrVC~DCyNl~R 31 (73)
T PF01147_consen 18 KLDRVCDDCYNLFR 31 (73)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 45799999998753
No 468
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=23.78 E-value=3.2e+02 Score=21.87 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003710 358 SIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIEKNLVSWNAMIAAYVRNGQNREA 422 (801)
Q Consensus 358 ~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 422 (801)
.++..+.+.|+-... ..-...+...+.+.|.++++.++.++...|.+...++-..|...-|
T Consensus 20 ~v~~~L~~~~Vlt~~----~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVFTPD----MIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCCCHH----HHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 455556665543221 2222233455678888888888888888888888888777765444
No 469
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=23.78 E-value=40 Score=35.92 Aligned_cols=144 Identities=17% Similarity=0.146 Sum_probs=77.6
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHHH--HHHHHhcCCChHHHHHHHhhcC--CCCc----
Q 003710 230 GLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTS--LVDMYGKCGVVDYAERLFNMIF--PRNI---- 301 (801)
Q Consensus 230 g~~p~~~t~~~ll~a~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~--li~~y~~~g~~~~A~~lf~~m~--~~~~---- 301 (801)
|+.||.++|.+-..+--+.-....|+..+..++ ||..+-.. -=..-...|.-..-+++|+.+. .|.+
T Consensus 410 ~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI-----Pd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~c 484 (650)
T KOG4334|consen 410 GVLPDLFPYGSGVGASKKTAKLVAARDTLEILI-----PDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMC 484 (650)
T ss_pred cccccccccccccccchHHHHHHHHHHHHHHhc-----chhhhcccccccccccccccchhHHHHhhcccccCchHHHHh
Confidence 677888888766555555556667777766653 44332221 0001112234455677888763 3332
Q ss_pred ------ccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhc------cCChHHHHHHHHHHHHhCCC
Q 003710 302 ------VAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTK------LGALLEGKSIHGYAIRKGFL 369 (801)
Q Consensus 302 ------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~------~g~~~~a~~~~~~~~~~g~~ 369 (801)
..|+.|..++.++-.+.+ +.+=.+|.. +..--+.++-+|.+ ..+...|.++-.+.+-.-+.
T Consensus 485 tk~~~psPy~iL~~cl~Rn~g~~d-~~ik~E~i~------~~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lH 557 (650)
T KOG4334|consen 485 TKCAIPSPYNILRDCLSRNLGWND-LVIKKEMIG------NGNQKSEVIMILGKHTEEAECKNKRQGKQLASQRILQKLH 557 (650)
T ss_pred hhcCCCCHHHHHHHHHHhhcCCcc-eeeeeeccC------CCCccceeEeeeccceeeeeeechhHHHHHHHHHHHHHhC
Confidence 246777777766644431 112223322 22222222222222 23566777777766666677
Q ss_pred CchhHHHHHHHHHHcc
Q 003710 370 PNVALETALIDMYAGS 385 (801)
Q Consensus 370 ~~~~~~~~Li~~y~k~ 385 (801)
|...+|.+|+.+|.+.
T Consensus 558 Ph~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 558 PHLLTWGSLLRIYGRL 573 (650)
T ss_pred HHhhhHHHHHHHhhhh
Confidence 8888888888888765
No 470
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=23.39 E-value=7.9e+02 Score=24.92 Aligned_cols=152 Identities=16% Similarity=0.122 Sum_probs=82.0
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCChhh-------HHHHHHHHhccCChHHHHHHHHH----HHHhCCCCchhHHHHH
Q 003710 310 GYVVNAHFLESFSCLRKMLEDDNLNPDCIT-------IINLLPSCTKLGALLEGKSIHGY----AIRKGFLPNVALETAL 378 (801)
Q Consensus 310 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-------~~~ll~~~~~~g~~~~a~~~~~~----~~~~g~~~~~~~~~~L 378 (801)
-.++.+++++|...+.+.... |+..|..+ ...+...+...|+...-.+.... |....-+....+..+|
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~k-g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGK-GVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcC-CCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 345566777777777777776 66655543 44455566666654443333222 2222222344555666
Q ss_pred HHHHHcc-CChHHHHHHHhcCCCC-----CH----HHHHHHHHHHHHcCCHHHHHHHHHH----HhCCCCCCCHhhHHHH
Q 003710 379 IDMYAGS-GALKMTEKLFGSMIEK-----NL----VSWNAMIAAYVRNGQNREAMELFQD----LWSEPLKPDAMTFASI 444 (801)
Q Consensus 379 i~~y~k~-g~~~~A~~~f~~~~~~-----~~----~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~pd~~t~~~l 444 (801)
++.+... ..++.-..+.....+. -. ..-.-+|..+.+.|.+.+|+.+... +.+-.-+|+..+...+
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhll 170 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLL 170 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhh
Confidence 6665443 3445544444433211 11 1223478889999999999987644 4444556776665433
Q ss_pred H-HHHHhhcChhhHHHHHH
Q 003710 445 L-PAYAEIATLSDSMQIHS 462 (801)
Q Consensus 445 l-~a~~~~~~~~~a~~i~~ 462 (801)
= .+|-...++.++..-+.
T Consensus 171 ESKvyh~irnv~KskaSLT 189 (421)
T COG5159 171 ESKVYHEIRNVSKSKASLT 189 (421)
T ss_pred hHHHHHHHHhhhhhhhHHH
Confidence 2 24444555555444443
No 471
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=22.56 E-value=9.1e+02 Score=29.15 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=10.0
Q ss_pred HHHHHhcCCChHHHHHHHhh
Q 003710 276 LVDMYGKCGVVDYAERLFNM 295 (801)
Q Consensus 276 li~~y~~~g~~~~A~~lf~~ 295 (801)
.+...+..|+.+-+..+++.
T Consensus 625 ~L~~Aa~~g~~~~v~~Ll~~ 644 (823)
T PLN03192 625 LLCTAAKRNDLTAMKELLKQ 644 (823)
T ss_pred HHHHHHHhCCHHHHHHHHHC
Confidence 34444555555555555543
No 472
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.78 E-value=5.9e+02 Score=30.19 Aligned_cols=122 Identities=15% Similarity=0.183 Sum_probs=77.5
Q ss_pred HHHhcCCccccc-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 003710 482 MYAKCGDLQTAR-------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFD 554 (801)
Q Consensus 482 ~y~~~g~~~~A~-------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 554 (801)
....||+++.|. |...|..|+..-..+|+.+-|...|++... |.-|--.|.-.|+.++-.++.+
T Consensus 652 LaLe~gnle~ale~akkldd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLDDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred eehhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHH
Confidence 345677777776 677899999999999999999888887654 2233334556788887777665
Q ss_pred HhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003710 555 SMRKDYGIVPGI-EHYGCIIDLLGRIGNLDQAKRFIEEMPSAPTARIWGALLTASRKNNDIVSAEFAARHVLS 626 (801)
Q Consensus 555 ~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 626 (801)
.... +.|. ..| +..+ -.|+.++-.++++....-|- .|. .-..+|.-+.|+++.+++-.
T Consensus 723 iae~----r~D~~~~~--qnal--Yl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 723 IAEI----RNDATGQF--QNAL--YLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHh----hhhhHHHH--HHHH--HhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 5432 2231 111 1111 24777777777776553221 121 22467888888888887755
No 473
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=21.68 E-value=4.8e+02 Score=21.89 Aligned_cols=84 Identities=8% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 003710 305 NAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAG 384 (801)
Q Consensus 305 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k 384 (801)
..++..|...+++++|...+.++... ...++..........=.+...-+....++..+.+.+.........++-+.+..
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~-~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~ 84 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLP-EQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWRLLED 84 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhh
Q ss_pred cCChH
Q 003710 385 SGALK 389 (801)
Q Consensus 385 ~g~~~ 389 (801)
..+++
T Consensus 85 l~dl~ 89 (113)
T smart00544 85 IEDLE 89 (113)
T ss_pred Chhhh
No 474
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=21.68 E-value=2.4e+02 Score=28.28 Aligned_cols=59 Identities=14% Similarity=-0.005 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHH
Q 003710 602 GALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 602 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
..+-+++...++++.|....++++.++|.++.-..--+-+|++.|-..-|.+-+....+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 34445677888999999999999999999998888889999999999999888877544
No 475
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=21.38 E-value=5.3e+02 Score=24.64 Aligned_cols=89 Identities=10% Similarity=0.017 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCchhHHHH-HHHHHHcCCchHHHHHHHHHHHCCCccCCcccEEEECCEE
Q 003710 600 IWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLL-SNMYAEAGRWEDVEQIKAIMEKEGLKKTTGCSMFEKNGET 678 (801)
Q Consensus 600 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l-~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~ 678 (801)
...+++..|...||++.|.+++.-+++..+-|....-.+ +.++.+.+.-....+.++.|...-.....-.....-....
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~~ 122 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRIIA 122 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhccc
Confidence 344556666666666666666666666554443332222 3344444444444455555533211000000011111234
Q ss_pred EEEecCCCCc
Q 003710 679 HRFINQDRSH 688 (801)
Q Consensus 679 ~~~~~~~~~h 688 (801)
+.|..|.+.|
T Consensus 123 pvfrsGs~t~ 132 (199)
T PF04090_consen 123 PVFRSGSRTH 132 (199)
T ss_pred ccccCCCccc
Confidence 6677888777
No 476
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=21.27 E-value=3.1e+02 Score=29.42 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=31.7
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-------------C------CCCCcchHHHHHHHHHhcCCH
Q 003710 561 GIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEM-------------P------SAPTARIWGALLTASRKNNDI 614 (801)
Q Consensus 561 ~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-------------~------~~p~~~~~~~ll~~~~~~g~~ 614 (801)
|.-.|...+...+..+...-.++||.+--.+. + ..||..+|.+....|+.-|-+
T Consensus 181 G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~~~ 253 (391)
T cd07229 181 GYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSAAL 253 (391)
T ss_pred CCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCcccc
Confidence 43444455554445544445567776432221 0 148999999999888776543
No 477
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.25 E-value=6.6e+02 Score=26.02 Aligned_cols=38 Identities=8% Similarity=0.037 Sum_probs=24.9
Q ss_pred CCCchhhHhHHHHHHHhcCCchHHHHhhccCCCCCccc
Q 003710 165 LNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVRDTVS 202 (801)
Q Consensus 165 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~ 202 (801)
+......+..++.+|+..--+++|...+++-.++.+..
T Consensus 295 ~~~~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i~ 332 (365)
T KOG2391|consen 295 IECTAPLYKQILECYALDLAIEDAIYSLGKSLRDGVID 332 (365)
T ss_pred hhccchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCeee
Confidence 34455667777778877777777777777755554433
No 478
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=21.25 E-value=7.3e+02 Score=29.00 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHhCCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhc
Q 003710 318 LESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGS 397 (801)
Q Consensus 318 ~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 397 (801)
++....+....+..|+..+...+..++..+ .|++..+..++++++..|- ...+. +....++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~--g~It~-------------e~V~~lLG~ 243 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGS--GKVAE-------------NDVRQMIGA 243 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC--CCcCH-------------HHHHHHHcc
Confidence 344455555544447777777666666554 4888888888877665431 11111 111122211
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCC
Q 003710 398 MIEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPD 437 (801)
Q Consensus 398 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 437 (801)
.+......|+.++.. ++...++.++++|...|+.+.
T Consensus 244 ---~d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 244 ---VDKQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred ---cCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 122233344555444 888899999999988876554
No 479
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=21.18 E-value=1.1e+03 Score=25.66 Aligned_cols=181 Identities=9% Similarity=0.019 Sum_probs=85.2
Q ss_pred CCchHHHHHHHHHHhcCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCChhhHHHHHHH
Q 003710 267 EMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPS 346 (801)
Q Consensus 267 ~~~~~~~~~li~~y~~~g~~~~A~~lf~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~ 346 (801)
.++..+.....+++.+.+..+....+......++...-...+.++...+. ++...+....+ .+|...-...+.+
T Consensus 97 d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~----d~d~~Vra~A~ra 170 (410)
T TIGR02270 97 AGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT----HEDALVRAAALRA 170 (410)
T ss_pred CCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc----CCCHHHHHHHHHH
Confidence 34555666666666666666655555555544554444444444443331 12333333332 2444445555555
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCChHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003710 347 CTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGS-MIEKNLVSWNAMIAAYVRNGQNREAMEL 425 (801)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l 425 (801)
+...+..+..-.+ ..+ --..|..+-..-+.+....|. ++|...... ...++....-.+...+... ..+++++.
T Consensus 171 LG~l~~~~a~~~L-~~a---l~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~~~a~~~ 244 (410)
T TIGR02270 171 LGELPRRLSESTL-RLY---LRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVA-GGPDAQAW 244 (410)
T ss_pred HHhhccccchHHH-HHH---HcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhC-CchhHHHH
Confidence 5555543222222 112 113455555556666666666 444444333 2333333333333333322 23366666
Q ss_pred HHHHhCCCCCCCHhhHHHHHHHHHhhcChhhHHHHHHHH
Q 003710 426 FQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLI 464 (801)
Q Consensus 426 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 464 (801)
+.+..+. ++ +-...+.++.+.|+......+...+
T Consensus 245 L~~ll~d---~~--vr~~a~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 245 LRELLQA---AA--TRREALRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred HHHHhcC---hh--hHHHHHHHHHHcCCcchHHHHHHHh
Confidence 6665543 11 4445566666666655544444433
No 480
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.91 E-value=2.7e+02 Score=25.85 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=21.3
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHhccC
Q 003710 205 SMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEG 249 (801)
Q Consensus 205 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 249 (801)
.++..+...++.-.|.++++.+.+.+..++..|....|..+...|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 344444444444455555555555554444444444444444333
No 481
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=20.83 E-value=1.5e+03 Score=27.37 Aligned_cols=151 Identities=14% Similarity=0.070 Sum_probs=78.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHH
Q 003710 499 NVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLG 577 (801)
Q Consensus 499 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~ 577 (801)
|..+.-++..+..+......++..+. .|..--.+.|.++.+.+. .+...+++..-+++.-.|. ..-|-.+...-.
T Consensus 676 n~~l~~l~~~~~~~~~~~~~~~~~~a---~~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~ 751 (863)
T TIGR02414 676 NACLSYLSAADDAEIRNLALEQFKSA---DNMTDRLAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSP 751 (863)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCC
Confidence 44444444445443323333333332 233333444555554443 2333444444444444454 333333332222
Q ss_pred hcCCHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCC------HHHHH-HHHHHHHccCCCCchhHHHHHHHHHHcCCch
Q 003710 578 RIGNLDQAKRFIEEMPSA-PTARIWGALLTASRKNND------IVSAE-FAARHVLSSAQDNTGCYVLLSNMYAEAGRWE 649 (801)
Q Consensus 578 ~~g~~~eA~~~~~~m~~~-p~~~~~~~ll~~~~~~g~------~~~a~-~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 649 (801)
..+-++...++.+.-.+. .++--.++|+.+++..+. -..|. -+.+.++++++-|+.+-..|+..+.+=.+++
T Consensus 752 ~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~ 831 (863)
T TIGR02414 752 RPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLD 831 (863)
T ss_pred cccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCC
Confidence 222233333333322222 345567899999864332 22333 4667888999999999899999999888888
Q ss_pred HHHH
Q 003710 650 DVEQ 653 (801)
Q Consensus 650 ~a~~ 653 (801)
+.++
T Consensus 832 ~~r~ 835 (863)
T TIGR02414 832 PKRQ 835 (863)
T ss_pred HHHH
Confidence 7766
No 482
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.73 E-value=3e+02 Score=27.34 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=11.0
Q ss_pred HHHhccCCHHHHHHHHHHhHH
Q 003710 538 SSCSISGMVDEGWNYFDSMRK 558 (801)
Q Consensus 538 ~a~~~~g~~~~a~~~~~~m~~ 558 (801)
.-|.+.|++++|.++|+.+..
T Consensus 186 ~ey~~~g~~~~A~~~l~~~~~ 206 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPAAS 206 (247)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 345555555555555555543
No 483
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=20.69 E-value=1.6e+02 Score=33.86 Aligned_cols=50 Identities=16% Similarity=0.054 Sum_probs=0.0
Q ss_pred CCCCCCCcccccCCCCCCCCCCCCCCccccCCCCCCCCCccccccCCccc
Q 003710 1 MATPAPLAIHSHFFNSNSPTRRNPSQKQFKIPETNPTPSFETNARSSKST 50 (801)
Q Consensus 1 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (801)
+++|++.+.++++.++.++..++++......|.+++.|..-+...+..+.
T Consensus 297 ~p~p~~~~~~pPppp~~ppv~~ln~~~s~~~p~pp~~p~l~~~~espvpp 346 (830)
T KOG1923|consen 297 APSPLRLRCSPPPPPPFPPVGPLNSNLSSGAPQPPGVPFLLTFPESPVPP 346 (830)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccCCCCCCCCC
No 484
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=20.28 E-value=1.4e+02 Score=25.20 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=12.3
Q ss_pred HHHHHHHcCCChhhHHHHHHHH
Q 003710 205 SMIGGYCSVGDGVSSLVFFKEM 226 (801)
Q Consensus 205 ~li~~~~~~g~~~~A~~l~~~m 226 (801)
.+|..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3455555566666666666554
Done!