Query 003710
Match_columns 801
No_of_seqs 799 out of 4954
Neff 10.4
Searched_HMMs 29240
Date Tue Mar 26 17:48:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003710.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1760-1763//hhsearch_pdb/003710hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 333.5 40.4 499 78-644 63-596 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 326.1 39.5 468 183-662 67-580 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 219.3 20.0 132 318-450 87-222 (501)
4 4g26_A Pentatricopeptide repea 1.0 1 1 215.0 24.8 211 120-384 11-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 185.5 44.0 343 273-647 36-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 181.2 40.0 348 280-660 9-367 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 178.6 35.5 232 403-663 237-480 (514)
8 2gw1_A Mitochondrial precursor 1.0 1 1 168.5 30.9 242 372-638 237-489 (514)
9 2y4t_A DNAJ homolog subfamily 1.0 1 1 167.1 34.7 205 410-643 150-374 (450)
10 3fp2_A TPR repeat-containing p 1.0 1 1 162.2 34.5 229 405-662 245-492 (537)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=333.47 Aligned_cols=499 Identities=9% Similarity=-0.043 Sum_probs=360.0
Q ss_pred HHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 98379968999999517999911499999999819993699999999877899999433899999986579903899999
Q 003710 78 LVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADYFTYPFVIKACAGLLYLSEGEKVH 157 (801)
Q Consensus 78 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 157 (801)
+.+.|.+..+...|+.++.++...|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.++...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 65567667887754663378999999999999874583479999999996--0899357999999999747699999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC-------------------CCCCHHHHHHHHHCCCCHHH
Q ss_conf 99999299996205769999978149902789751339999-------------------94438999999970999135
Q 003710 158 GSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVR-------------------DTVSWNSMIGGYCSVGDGVS 218 (801)
Q Consensus 158 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~~~~ 218 (801)
+.+... .++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 987335--456508999999999886699999998424886322323433432112351258999998899998399899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHH---HHHH-HHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99999998867988895139999998852298289---9999-9999994999846799899998761799489999984
Q 003710 219 SLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKI---GKEI-HCQVIKSGLEMDVMVQTSLVDMYGKCGVVDYAERLFN 294 (801)
Q Consensus 219 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~---a~~i-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 294 (801)
|+++|++|.+.+ |+.......+..+........ ...+ +..+...+......+++.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC--CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999999729--325699999998503461567899986577423443088999999999999807313999999998
Q ss_pred HCCC--CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 0189--99301899999998479915899999997767999998516998999983249928899999999994999865
Q 003710 295 MIFP--RNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNV 372 (801)
Q Consensus 295 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~ 372 (801)
++.. ++..+|+.++..|.+.|++++|+.+|+++... + +.+..++..++..+...|+.++|..++..+.+.. +.+.
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-D-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC-C-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCH
T ss_conf 76438830999999999999846899999999999972-9-5537999999999998277779999999998518-3547
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 689999999990699699999983078---87888799999999981998799999998827999989701988999998
Q 003710 373 ALETALIDMYAGSGALKMTEKLFGSMI---EKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYA 449 (801)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 449 (801)
.+++.++.+|.+.|++++|..+|+++. ..+..+|+.++.+|.+.|++++|+++|++|...+ +.+..
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~---------- 442 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHL---------- 442 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSH----------
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHH----------
T ss_conf 9999999999983569999999999987297778999999999997577799999999999868-13438----------
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 10592669999999999299873579989988998159922330478999999999972998999999999998899989
Q 003710 450 EIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN 529 (801)
Q Consensus 450 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 529 (801)
+|+.++.+|...|+.++|+++|++|.+.. +.+
T Consensus 443 -----------------------------------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 474 (597)
T 2xpi_A 443 -----------------------------------------------PYLFLGMQHMQLGNILLANEYLQSSYALF-QYD 474 (597)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCC
T ss_pred -----------------------------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
T ss_conf -----------------------------------------------99999999998579999999999999848-887
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCCCCHHH
Q ss_conf 8999999999852299899999999938841---99989--58999999999832998999999995999--99922699
Q 003710 530 ESTFVSLLSSCSISGMVDEGWNYFDSMRKDY---GIVPG--IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWG 602 (801)
Q Consensus 530 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~ 602 (801)
..+|..++..+.+.|++++|.++|+.+.+.. +..|+ ..+|..++.+|.+.|++++|.++++++.. ..+..+|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 67999999999981899999999999998532345453549999999999999804799999999999973899738999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999945997999999999970299993269999999997
Q 003710 603 ALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAE 644 (801)
Q Consensus 603 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 644 (801)
.+...+...|+.++|...++++++++|++...+..++++|..
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 999999981789999999999972088874899999998743
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=326.06 Aligned_cols=468 Identities=10% Similarity=-0.037 Sum_probs=327.4
Q ss_pred CCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99027897513399999443899999997099913599999998867988895139999998852298289999999999
Q 003710 183 GCVECAERMFDEMPVRDTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVI 262 (801)
Q Consensus 183 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 262 (801)
|.+..+...++.++.++...|+.++..+.+.|++++|+.+|++|.. ..|+..++..+..++...|+++.|..++..+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 144 (597)
T 2xpi_A 67 GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKED 144 (597)
T ss_dssp ---------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 7667887754663378999999999999874583479999999996--08993579999999997476999999999873
Q ss_pred HHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC-------------------CCCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf 9499984679989999876179948999998401899-------------------930189999999847991589999
Q 003710 263 KSGLEMDVMVQTSLVDMYGKCGVVDYAERLFNMIFPR-------------------NIVAWNAMVGGYVVNAHFLESFSC 323 (801)
Q Consensus 263 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~ 323 (801)
.. .++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++|+.+
T Consensus 145 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 145 LY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp GG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 35--4565089999999998866999999984248863223234334321123512589999988999983998999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHH---HHH-HHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 999776799999851699899998324992889---999-9999994999865689999999990699699999983078
Q 003710 324 LRKMLEDDNLNPDCITIINLLPSCTKLGALLEG---KSI-HGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMI 399 (801)
Q Consensus 324 ~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a---~~i-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 399 (801)
|++|.+. .|+..+....+..+......... ..+ +..+...+......+++.++..|.+.|++++|.++|+++.
T Consensus 223 ~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 299 (597)
T 2xpi_A 223 YKEALMV---DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299 (597)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTST
T ss_pred HHHHHHH---CCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9999972---9325699999998503461567899986577423443088999999999999807313999999998764
Q ss_pred C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 8--78887999999999819987999999988279999897019889999981059266999999999929987357998
Q 003710 400 E--KNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISN 477 (801)
Q Consensus 400 ~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 477 (801)
+ ++..+|+.++.+|.+.|++++|+.+|+++...+ +.+..++..++.++...|+.+.|..+++.+.+.. +.+..+++
T Consensus 300 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 377 (597)
T 2xpi_A 300 GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWL 377 (597)
T ss_dssp TGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHH
T ss_conf 388309999999999998468999999999999729-5537999999999998277779999999998518-35479999
Q ss_pred HHHHHHHHCCCCCCCC------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9988998159922330------------4789999999999729989999999999988999898999999999852299
Q 003710 478 SIVYMYAKCGDLQTAR------------DVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGM 545 (801)
Q Consensus 478 ~li~~~~~~g~~~~A~------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 545 (801)
.++.+|.++|++++|. +..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.+|.+.|+
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 456 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGN 456 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
T ss_conf 999999983569999999999987297778999999999997577799999999999868-1343899999999998579
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-------CCCCC--CCHHHHHHHHHHHCCCHHH
Q ss_conf 89999999993884199989589999999998329989999999959-------99999--2269999999994599799
Q 003710 546 VDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQAKRFIEEM-------PSAPT--ARIWGALLTASRKNNDIVS 616 (801)
Q Consensus 546 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~ 616 (801)
+++|.++|+.+.+.. ..+...|..++.+|.+.|++++|.++++++ +..|+ ..+|..++.+|...|+.+.
T Consensus 457 ~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 457 ILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 999999999999848--887679999999999818999999999999985323454535499999999999998047999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 9999999970299993269999999997399069999999999779
Q 003710 617 AEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG 662 (801)
Q Consensus 617 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 662 (801)
|...++++++.+|++..+|..++.+|...|++++|.+.++++.+..
T Consensus 535 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 535 AIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 9999999997389973899999999998178999999999997208
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=219.32 Aligned_cols=132 Identities=12% Similarity=0.079 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 58999999977679999985169989999832499288999999999949998656899999999906996999999830
Q 003710 318 LESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGS 397 (801)
Q Consensus 318 ~~A~~~~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (801)
++|.++|.+|... |+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+++|.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999999980-899989999999999984697788999999999728988611104899999988899999999999
Q ss_pred C----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 7----8878887999999999819987999999988279999897019889999981
Q 003710 398 M----IEKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAE 450 (801)
Q Consensus 398 ~----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 450 (801)
| ..||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||..++..++.
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 986299999999999999985389899999999999994899699999999999830
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=215.02 Aligned_cols=211 Identities=9% Similarity=0.017 Sum_probs=114.0
Q ss_pred HHHHHHHHCCCCCCCC-CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
Q ss_conf 9999987789999943-389999998657990389999999999299996205769999978149902789751339999
Q 003710 120 EFHHRMVCEGFKADYF-TYPFVIKACAGLLYLSEGEKVHGSLFKSGLNSDVYVCNSLIVMYMKLGCVECAERMFDEMPVR 198 (801)
Q Consensus 120 ~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 198 (801)
.+.+.+.+.+....+. .++.+|.+|++.|++++|.++++.|.+.|+.||..+||.||.+|++.+...++
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~---------- 80 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES---------- 80 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS----------
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH----------
T ss_conf 9999999826668979999999999985989999999999999818998783999999999857830433----------
Q ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 94438999999970999135999999988679888951399999988522982899999999999499984679989999
Q 003710 199 DTVSWNSMIGGYCSVGDGVSSLVFFKEMQNCGLRYDRFSLISALGAISIEGCLKIGKEIHCQVIKSGLEMDVMVQTSLVD 278 (801)
Q Consensus 199 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 278 (801)
.+.+..++|.++|++|...|+.||..||+.+|.+|++.|++++|.+++++|.+.|+.||..+|+++|.
T Consensus 81 ------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~ 148 (501)
T 4g26_A 81 ------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALF 148 (501)
T ss_dssp ------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred ------------HHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHH
T ss_conf ------------32124999999999999808999899999999999846977889999999997289886111048999
Q ss_pred HHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 87617994899999840189993018999999984799158999999977679999985169989999832499288999
Q 003710 279 MYGKCGVVDYAERLFNMIFPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEGKS 358 (801)
Q Consensus 279 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~ 358 (801)
+|++.|+++ +|.++|++|.+. |+.||..||+.++.+|++.|++++|.+
T Consensus 149 ~~~~~g~~~-------------------------------~A~~l~~~M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ 196 (501)
T 4g26_A 149 GFCRKGDAD-------------------------------KAYEVDAHMVES-EVVPEEPELAALLKVSMDTKNADKVYK 196 (501)
T ss_dssp HHHHTTCHH-------------------------------HHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHCCCHH-------------------------------HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 999888999-------------------------------999999999862-999999999999999853898999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 99999994999865689999999990
Q 003710 359 IHGYAIRKGFLPNVALETALIDMYAG 384 (801)
Q Consensus 359 i~~~~~~~g~~~~~~~~~~li~~~~~ 384 (801)
+++.|.+.|..|+..+++.++..|+.
T Consensus 197 ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 197 TLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 99999994899699999999999830
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=185.47 Aligned_cols=343 Identities=15% Similarity=0.183 Sum_probs=218.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHC---CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHH
Q ss_conf 989999876179948999998401---89993018999999984799158999999977679999985-16998999983
Q 003710 273 QTSLVDMYGKCGVVDYAERLFNMI---FPRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDC-ITIINLLPSCT 348 (801)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~l~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~-~t~~~ll~~~~ 348 (801)
+..+...+...|+.++|...++.. .+.+...|..+...+.+.|++++|+..|+++... .|+. .++..+...+.
T Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~ 112 (388)
T 1w3b_A 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL---KPDFIDGYINLAAALV 112 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHH
T ss_conf 9999999998689999999999997619786699999999998779999999999999874---9653999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCC---CCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 2499288999999999949998656899999999906996999999830788---7888799999999981998799999
Q 003710 349 KLGALLEGKSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIE---KNLVSWNAMIAAYVRNGQNREAMEL 425 (801)
Q Consensus 349 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 425 (801)
..|+++.|...+..+.+.. +.+...+..+...+...|++++|...|+++.. .+...|..+...+...|++++|+..
T Consensus 113 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 191 (388)
T 1w3b_A 113 AAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp HHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 8589999999999999759-896899999999999846899999999999872989789999999999985999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99882799998970198899999810592669999999999299873579989988998159922330478999999999
Q 003710 426 FQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAY 505 (801)
Q Consensus 426 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~d~~~~~~li~~~ 505 (801)
|+++.... +-+...+..+...+...++++.+...+..+.+.. |+ +...|..++..+
T Consensus 192 ~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~---------------------~~~~~~~l~~~~ 247 (388)
T 1w3b_A 192 FEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PN---------------------HAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TT---------------------CHHHHHHHHHHH
T ss_pred HHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CC---------------------CHHHHHHHHHHH
T ss_conf 99998559-8867999999999998578999999999998529--68---------------------789999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 972998999999999998899989-8999999999852299899999999938841999895899999999983299899
Q 003710 506 AIHGLGKISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPGIEHYGCIIDLLGRIGNLDQ 584 (801)
Q Consensus 506 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 584 (801)
...|++++|++.|+++.+. .|+ ..++..+...+...|++++|...|+.+.+. ...+...+..++.++.+.|++++
T Consensus 248 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 9868899999999999864--9998899999999999869979999999999864--94449999999999998489999
Q ss_pred HHHHHHHCCC-CC-CCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9999995999-99-922699999999945997999999999970299993269999999997399
Q 003710 585 AKRFIEEMPS-AP-TARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGR 647 (801)
Q Consensus 585 A~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 647 (801)
|.+.++++.. .| +...|..+...+...|+.+.|...++++++..|.+...|..++.+|...|+
T Consensus 324 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999860987399997799999986888999999999986199978999859999987459
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=181.22 Aligned_cols=348 Identities=12% Similarity=0.063 Sum_probs=183.4
Q ss_pred HHCCCCHHHHHHHHHHCC---CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 761799489999984018---99930189999999847991589999999776799999851699899998324992889
Q 003710 280 YGKCGVVDYAERLFNMIF---PRNIVAWNAMVGGYVVNAHFLESFSCLRKMLEDDNLNPDCITIINLLPSCTKLGALLEG 356 (801)
Q Consensus 280 ~~~~g~~~~A~~l~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a 356 (801)
+.+.|++++|.+.++.+. +.+...+..+...+...|++++|...+...... .+.+..++..+...+...|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 987799999999999999849788999999999999868999999999999761--978669999999999877999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Q ss_conf 99999999949998656899999999906996999999830788--7-88879999999998199879999999882799
Q 003710 357 KSIHGYAIRKGFLPNVALETALIDMYAGSGALKMTEKLFGSMIE--K-NLVSWNAMIAAYVRNGQNREAMELFQDLWSEP 433 (801)
Q Consensus 357 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 433 (801)
...+..+.+.. +.+...+..+...|.+.|++++|...|+++.+ | +...+..+...+...|++++|...|+++...
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET- 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
T ss_conf 99999998749-6539999999999998589999999999999759896899999999999846899999999999872-
Q ss_pred CCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHH
Q ss_conf 998-9701988999998105926699999999992998735799899889981599223304789999999999729989
Q 003710 434 LKP-DAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGK 512 (801)
Q Consensus 434 ~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~d~~~~~~li~~~~~~g~~~ 512 (801)
.| +..++..+...+...|+++.|...++.+.+.. +.+. ..|..+...+...|+++
T Consensus 165 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~----------------------~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 165 -QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFL----------------------DAYINLGNVLKEARIFD 220 (388)
T ss_dssp -CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH----------------------HHHHHHHHHHHTTTCTT
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCH----------------------HHHHHHHHHHHHCCCHH
T ss_conf -98978999999999998599999999999998559-8867----------------------99999999999857899
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999998899989-899999999985229989999999993884199989-5899999999983299899999999
Q 003710 513 ISIQLFSEMREKGIKPN-ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG-IEHYGCIIDLLGRIGNLDQAKRFIE 590 (801)
Q Consensus 513 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~ 590 (801)
+|+..|++.... .|+ ..++..+...+...|++++|...|+.+.+ ..|+ ...+..++.++.+.|++++|.+.++
T Consensus 221 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 295 (388)
T 1w3b_A 221 RAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999852--968789999999999986889999999999986---499988999999999998699799999999
Q ss_pred HCCC--CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 5999--999226999999999459979999999999702999932699999999973990699999999997
Q 003710 591 EMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEK 660 (801)
Q Consensus 591 ~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 660 (801)
++.. +.+...|..+...+...|+.+.|...++++++..|++...+..++.+|...|++++|...++.+.+
T Consensus 296 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 998649444999999999999848999999999999860987399997799999986888999999999986
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=178.57 Aligned_cols=232 Identities=10% Similarity=0.003 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 88799999999981998799999998827999989701988999998105926699999999992998735799899889
Q 003710 403 LVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYM 482 (801)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 482 (801)
...|..+...+...|++++|+..|+++.... |+...+..+...+...|+++.|...+..+.+.. +.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~--------- 304 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNS--------- 304 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCT---------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCH---------
T ss_conf 9999999999998789999999999998638--648999999999998888999999999986138-6778---------
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 98159922330478999999999972998999999999998899989899999999985229989999999993884199
Q 003710 483 YAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGI 562 (801)
Q Consensus 483 ~~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 562 (801)
..|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++.+.+.
T Consensus 305 -------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 367 (514)
T 2gw1_A 305 -------------SVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--- 367 (514)
T ss_dssp -------------HHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---
T ss_pred -------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
T ss_conf -------------999999999998077999999999998738-502899999999999868999999999999987---
Q ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHCCC----CCC----CCHHHHHHHHHHH---CCCHHHHHHHHHHHHCCCCC
Q ss_conf 98-958999999999832998999999995999----999----2269999999994---59979999999999702999
Q 003710 563 VP-GIEHYGCIIDLLGRIGNLDQAKRFIEEMPS----APT----ARIWGALLTASRK---NNDIVSAEFAARHVLSSAQD 630 (801)
Q Consensus 563 ~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~----~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~ 630 (801)
.| +...+..+..++.+.|++++|...++++.. .+. ...|..+...+.. .|+.+.|...++++++..|.
T Consensus 368 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 447 (514)
T 2gw1_A 368 FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447 (514)
T ss_dssp STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 54677899999999987889999999999999761233217899999999999986633258889999999999875855
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 932699999999973990699999999997798
Q 003710 631 NTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEGL 663 (801)
Q Consensus 631 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 663 (801)
+...+..++.+|...|++++|...++...+...
T Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 448 SEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 589999999999982579999999999987661
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=168.48 Aligned_cols=242 Identities=12% Similarity=-0.023 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 5689999999990699699999983078--87888799999999981998799999998827999989701988999998
Q 003710 372 VALETALIDMYAGSGALKMTEKLFGSMI--EKNLVSWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYA 449 (801)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 449 (801)
...+..+...|...|++++|...|+.+. .++...|..+...|...|++++|+..++++.... +.+...+..+...+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHH
T ss_conf 9999999999998789999999999998638648999999999998888999999999986138-677899999999999
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 10592669999999999299873579989988998159922330478999999999972998999999999998899989
Q 003710 450 EIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPN 529 (801)
Q Consensus 450 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 529 (801)
..|+++.|...+..+.+... .+. ..|..+...+...|++++|+..++++.+.. +.+
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~-~~~----------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 371 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDP-ENI----------------------FPYIQLACLAYRENKFDDCETLFSEAKRKF-PEA 371 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCS-SCS----------------------HHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHCCHHHHHHHHHHHHHHCH-HHH----------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
T ss_conf 80779999999999987385-028----------------------999999999998689999999999999875-467
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHH---CCCHHHHHHHHHHCCC--CCCCCH
Q ss_conf 899999999985229989999999993884199989----5899999999983---2998999999995999--999226
Q 003710 530 ESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVPG----IEHYGCIIDLLGR---IGNLDQAKRFIEEMPS--APTARI 600 (801)
Q Consensus 530 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~---~g~~~eA~~~~~~m~~--~p~~~~ 600 (801)
...+..+...+...|++++|...++.+.+...-.+. ...+..++.++.. .|++++|.+.++++.. +.+...
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 451 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 78999999999878899999999999997612332178999999999999866332588899999999998758555899
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 99999999945997999999999970299993269999
Q 003710 601 WGALLTASRKNNDIVSAEFAARHVLSSAQDNTGCYVLL 638 (801)
Q Consensus 601 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 638 (801)
|..+...+...|+.+.|...+++++++.|.+...+..+
T Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 452 KIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999982579999999999987661468899999
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=167.15 Aligned_cols=205 Identities=11% Similarity=0.040 Sum_probs=137.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999819987999999988279999897019889999981059266999999999929987357998998899815992
Q 003710 410 IAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYAKCGDL 489 (801)
Q Consensus 410 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 489 (801)
...+...|++++|+..|+++.... +.+...+..+...+...|+++.|...+..+.+.. +.
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~------------------ 209 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-ND------------------ 209 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CS------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC------------------
T ss_conf 999998689999999999999868-8976999999999987799999999999999868-89------------------
Q ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH-HHHH------------HHHHHCCCCHHHHHHHHHHH
Q ss_conf 2330478999999999972998999999999998899989899-9999------------99985229989999999993
Q 003710 490 QTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNEST-FVSL------------LSSCSISGMVDEGWNYFDSM 556 (801)
Q Consensus 490 ~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~l------------l~a~~~~g~~~~a~~~~~~m 556 (801)
+..+|..++..|...|++++|+..|+++.. ..|+... +..+ ...+...|++++|...|+.+
T Consensus 210 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 283 (450)
T 2y4t_A 210 ----NTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 283 (450)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf ----879999999999975999999999999987--59980899999999999999999999998717999999999999
Q ss_pred HHHCCCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Q ss_conf 884199989-----58999999999832998999999995999--99922699999999945997999999999970299
Q 003710 557 RKDYGIVPG-----IEHYGCIIDLLGRIGNLDQAKRFIEEMPS--APTARIWGALLTASRKNNDIVSAEFAARHVLSSAQ 629 (801)
Q Consensus 557 ~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 629 (801)
.+. .|+ ..++..++.++.+.|++++|.+.++++.. +.+...|..+..+|...|+.+.|...+++++++.|
T Consensus 284 l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 284 MKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHC---CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 850---87336899999999999999878899999999999884845489999999999870379999999999988593
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 99326999999999
Q 003710 630 DNTGCYVLLSNMYA 643 (801)
Q Consensus 630 ~~~~~~~~l~~~y~ 643 (801)
.+...+..+..+..
T Consensus 361 ~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 361 NDQQIREGLEKAQR 374 (450)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
T ss_conf 52999999999999
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=162.18 Aligned_cols=229 Identities=10% Similarity=0.027 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 79999999998199879999999882799998970198899999810592669999999999299873579989988998
Q 003710 405 SWNAMIAAYVRNGQNREAMELFQDLWSEPLKPDAMTFASILPAYAEIATLSDSMQIHSLITKLGLVSNIYISNSIVYMYA 484 (801)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 484 (801)
.|..+...+...|++++|...|++.... .|+...+..+...+...|+++.|...+..+.+... .+
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~------------ 309 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EY------------ 309 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TC------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC-CC------------
T ss_conf 9999999987545578999999999866--98746999999999980379999999999754599-98------------
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 15992233047899999999997299899999999999889998989999999998522998999999999388419998
Q 003710 485 KCGDLQTARDVVSWNVIIMAYAIHGLGKISIQLFSEMREKGIKPNESTFVSLLSSCSISGMVDEGWNYFDSMRKDYGIVP 564 (801)
Q Consensus 485 ~~g~~~~A~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 564 (801)
...|..+...+...|++++|++.|++..... +.+...+..+...+...|++++|...++.+.+. .|
T Consensus 310 ----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~ 375 (537)
T 3fp2_A 310 ----------PPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FP 375 (537)
T ss_dssp ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT
T ss_pred ----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CC
T ss_conf ----------7999999999986689999999999999859-997799999999999847799999999999873---99
Q ss_pred C-HHHHHHHHHHHHHCCCHHHHHHHHHHCCC----CCC----CCHHHHHHHHHHHC----------CCHHHHHHHHHHHH
Q ss_conf 9-58999999999832998999999995999----999----22699999999945----------99799999999997
Q 003710 565 G-IEHYGCIIDLLGRIGNLDQAKRFIEEMPS----APT----ARIWGALLTASRKN----------NDIVSAEFAARHVL 625 (801)
Q Consensus 565 ~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~----~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~ 625 (801)
+ ...+..+..++...|++++|.+.++++.. .+. ...+..+...+... |+.+.|...+++++
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98599999999998837889999999999870976244688899999889999997640100224757999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 0299993269999999997399069999999999779
Q 003710 626 SSAQDNTGCYVLLSNMYAEAGRWEDVEQIKAIMEKEG 662 (801)
Q Consensus 626 ~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 662 (801)
+..|.+...+..++.+|...|++++|...++...+..
T Consensus 456 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 456 ELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 7499978999999999998514999999999999868
Done!