BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003711
(801 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 328 bits (840), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 188/366 (51%), Positives = 228/366 (62%), Gaps = 31/366 (8%)
Query: 437 LKGNIRVFCRVRPLLPDDSSGSEGKLI--------SYPTTTEALGRGID-------IMQN 481
LKGNIRVFCRVRP+LP + + G L+ S P T +L R +
Sbjct: 20 LKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAP 79
Query: 482 GQKHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGH 541
+H FSFDRVF P Q++VF EI+ LVQSALDGY VCIFAYGQTGSGKT+TM G PG
Sbjct: 80 PPRHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG 139
Query: 542 -PDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENAC 600
P L+GLIPR+L +F Q L QGW Y S +EIYNET+RDLL+T +
Sbjct: 140 DPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQ----- 194
Query: 601 NGKQYAIKHDASGNTH--VTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHF 658
G + I+ G+ VT+ V V KEV LL A +R+V +T NE+SSRSH
Sbjct: 195 -GGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHS 253
Query: 659 VFTLRISGLNESTEQQVQGILNLIDLAGSERLSKSGSTG----DRLKETQAINKSLSSLS 714
VF L+ISG + S Q L+L+DLAGSERL + G +RL+ETQAIN SLS+L
Sbjct: 254 VFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLG 313
Query: 715 DVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFA 774
VI AL+ KE HVP+RNSKLTYLLQ LGG +K LMFVNISP +V ESL SLRFA
Sbjct: 314 LVIMALS---NKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFA 370
Query: 775 ARVNAC 780
++VN C
Sbjct: 371 SKVNQC 376
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 325 bits (833), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 175/380 (46%), Positives = 237/380 (62%), Gaps = 34/380 (8%)
Query: 420 LIEGEKLRKRLHNTILELKGNIRVFCRVRPLLP--------------DDSSGSEGKLISY 465
L++ E LR+ LHN + EL+GNIRV+CR+RP LP DD +G +G I+
Sbjct: 9 LVKEESLRRALHNELQELRGNIRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTIN- 67
Query: 466 PTTTEALGRGIDIMQNGQKHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYG 525
RG N Q F FD++F E+ +++F E+ QL+QS+LDGY VCIFAYG
Sbjct: 68 --------RG-----NSQVIPFKFDKIFDQQETNDEIFKEVGQLIQSSLDGYNVCIFAYG 114
Query: 526 QTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRD 585
QTGSGKTYTM+ PG G++P ++ IF L ++GW Y++ +EIYNE I D
Sbjct: 115 QTGSGKTYTML-NPG----DGIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVD 169
Query: 586 LLSTNRDASRLENACNGKQYAIKHDAS-GNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSV 644
LL + + + ++ I+HD T++T++T + S V +L RA RS
Sbjct: 170 LLRSGAPSQENNDRNADSKHEIRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRST 229
Query: 645 GKTQMNEQSSRSHFVFTLRISGLNESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQ 704
T NE SSRSH +F + + G NE T ++ QGILNL+DLAGSERL+ S G+RL+ETQ
Sbjct: 230 ASTAANEHSSRSHSIFIIHLEGKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQ 289
Query: 705 AINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSV 764
+INKSLS L DVI AL + ++ H+PFRNSKLTYLLQ L G SKTLMFVNISP A +
Sbjct: 290 SINKSLSCLGDVIHALNSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHL 349
Query: 765 GESLCSLRFAARVNACEIGT 784
E++ SLRFA++VN ++ T
Sbjct: 350 NETINSLRFASKVNNTKMIT 369
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 320 bits (821), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 169/354 (47%), Positives = 235/354 (66%), Gaps = 12/354 (3%)
Query: 435 LELKGNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALG-RGIDIMQNGQK---HSFSFD 490
+ L+GNIRV+CRVRP L ++ LI EA G + + I +N + ++F FD
Sbjct: 1 MALRGNIRVYCRVRPPLLNEPQDMSHILIE--KFNEAKGAQSLTINRNEGRILSYNFQFD 58
Query: 491 RVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPR 550
+F P + +++F EI QLVQS+LDGY VCIFAYGQTGSGKTYTM+ G+IP
Sbjct: 59 MIFEPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAG-----DGMIPM 113
Query: 551 SLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHD 610
+L IF+ +L +GW YEM+ +EIYNETI DLL + ++ + +++ I+HD
Sbjct: 114 TLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHD 173
Query: 611 ASG-NTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNE 669
T++T++T + + ST +V +L +A+ RS T+ NE+SSRSH VF + I+G N
Sbjct: 174 HEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNL 233
Query: 670 STEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDH 729
T + QG LNL+DLAGSER++ S TG+RL+ETQ INKSLS L DVI+AL + + +
Sbjct: 234 HTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRY 293
Query: 730 VPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAARVNACEIG 783
+PFRNSKLTYLLQ L GDSKTLMFVNI P+ + + E+L SLRFA++VN+ +I
Sbjct: 294 IPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 318 bits (816), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 184/425 (43%), Positives = 258/425 (60%), Gaps = 32/425 (7%)
Query: 362 ARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLI 421
++ A+ +I +L +++AA +EK++ ++L G K+L NE+ LI
Sbjct: 3 SKIAALKEKIAALKEKIAALKEKIKDTEL----------GMKEL-NEI----------LI 41
Query: 422 EGEKLRKRLHNTILELKGNIRVFCRVRPLLPD--DSSGSEGKLISYPTTTEALGRGIDIM 479
+ E +R+ LHN + EL+GNIRV+ R+RP L + +S S + + + + +
Sbjct: 42 KEETVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKI 101
Query: 480 QN-GQKHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGK 538
QN Q H F FD++F ++ DVF E+ QLVQS+LDGY V IFAYGQTGSGKT+TM+
Sbjct: 102 QNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLN- 160
Query: 539 PGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLEN 598
PG G+IP ++ IF L ++GW Y++ +EIYNE I DLL + D + E+
Sbjct: 161 PG----DGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRS--DNNNKED 214
Query: 599 ACNGKQYAIKHDASGNTHVTDLTV-VDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSH 657
G ++ I+HD T V + S + V +L +A RS T NE SSRSH
Sbjct: 215 TSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSH 274
Query: 658 FVFTLRISGLNESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVI 717
+F + +SG N T G LNL+DLAGSER++ S GDRL+ETQ INKSLS+L DVI
Sbjct: 275 SIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVI 334
Query: 718 FALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAARV 777
AL + + + H+PFRNSKLTYLLQ L GDSKTLMFVNISP +S + E+L SLRFA++V
Sbjct: 335 HALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 394
Query: 778 NACEI 782
N+ +
Sbjct: 395 NSTRL 399
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 310 bits (795), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 169/361 (46%), Positives = 226/361 (62%), Gaps = 11/361 (3%)
Query: 426 LRKRLHNTILELKGNIRVFCRVRPLLPD--DSSGSEGKLISYPTTTEALGRGIDIMQN-G 482
+R+ LHN + EL+GNIRV+CR+RP L + +S S + + + + +QN
Sbjct: 1 MRRTLHNELQELRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTA 60
Query: 483 QKHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHP 542
Q H F FD++F ++ DVF E+ QLVQS+LDGY VCIFAYGQTGSGKT+TM+ PG
Sbjct: 61 QVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML-NPG-- 117
Query: 543 DLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNG 602
G+IP ++ IF L ++GW Y++ +EIYNE I DLL + D + E+ G
Sbjct: 118 --DGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRS--DNNNKEDTSIG 173
Query: 603 KQYAIKHDASGNTHVTDLTVVDVCSTKE-VSYLLDRAAHSRSVGKTQMNEQSSRSHFVFT 661
++ I+HD T ++E V +L +A RS T NE SSRSH +F
Sbjct: 174 LKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFI 233
Query: 662 LRISGLNESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALA 721
+ +SG N T G LNL+DLAGSER++ S GDRL+ETQ INKSLS L DVI AL
Sbjct: 234 IHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALG 293
Query: 722 KKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAARVNACE 781
+ + + H+PFRNSKLTYLLQ L GDSKTLMFVNISP +S + E+L SLRFA++VN+
Sbjct: 294 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTR 353
Query: 782 I 782
+
Sbjct: 354 L 354
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 297 bits (761), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 164/384 (42%), Positives = 237/384 (61%), Gaps = 22/384 (5%)
Query: 413 LEDAEYKLIEGEKLRKRLHNTILELKGNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEAL 472
LE + +L + RK LHNT+++L+GNIRVFCR+RP L + + + +T L
Sbjct: 41 LETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVEL 100
Query: 473 GRGIDIMQNGQ--KHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSG 530
+ ID + + FSFD+VF P SQ D+F +S L+QSALDGY +CIFAYGQTGSG
Sbjct: 101 -QSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSG 159
Query: 531 KTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTN 590
KTYTM G P+ G+IPR+++ +F + + + GW+YE++ + LEIYNE + DLLS
Sbjct: 160 KTYTM---DGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE 216
Query: 591 RDASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMN 650
+ + A N K + +V+++T V + +L+ A +R+ T N
Sbjct: 217 QKDMEIRMAKNNK---------NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGN 267
Query: 651 EQSSRSHFVFTLRISGLNESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSL 710
E+SSRSH V L + G + ++ G +NL+DLAGSE S T R+ ET+ IN+SL
Sbjct: 268 ERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSL 323
Query: 711 SSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCS 770
S L++VI AL +K+ DH+P+RNSKLT+LL P LGG+SKTLMF+N+SP ES+ S
Sbjct: 324 SELTNVILALLQKQ---DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKS 380
Query: 771 LRFAARVNACEIGTPRRQTSMRSS 794
LRFAA VN+C++ +R + +S
Sbjct: 381 LRFAASVNSCKMTKAKRNRYLNNS 404
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 297 bits (760), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 163/348 (46%), Positives = 216/348 (62%), Gaps = 11/348 (3%)
Query: 439 GNIRVFCRVRPLLPD--DSSGSEGKLISYPTTTEALGRGIDIMQN-GQKHSFSFDRVFMP 495
GNIRV+CR+RP L + +S S + + + + +QN Q H F FD++F
Sbjct: 2 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 61
Query: 496 DESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQI 555
++ DVF E+ QLVQS+LDGY VCIFAYGQTGSGKT+TM+ PG G+IP ++ I
Sbjct: 62 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML-NPG----DGIIPSTISHI 116
Query: 556 FQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDASGNT 615
F L ++GW Y++ +EIYNE I DLL + D + E+ G ++ I+HD T
Sbjct: 117 FNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRS--DNNNKEDTSIGLKHEIRHDQETKT 174
Query: 616 HVTDLTVVDVCSTKE-VSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQQ 674
++E V +L +A RS T NE SSRSH +F + +SG N T
Sbjct: 175 TTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAH 234
Query: 675 VQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRN 734
G LNL+DLAGSER++ S GDRL+ETQ INKSLS L DVI AL + + + H+PFRN
Sbjct: 235 SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRN 294
Query: 735 SKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAARVNACEI 782
SKLTYLLQ L GDSKTLMFVNISP +S + E+L SLRFA++VN+ +
Sbjct: 295 SKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 342
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 296 bits (759), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 164/384 (42%), Positives = 237/384 (61%), Gaps = 22/384 (5%)
Query: 413 LEDAEYKLIEGEKLRKRLHNTILELKGNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEAL 472
LE + +L + RK LHNT+++L+GNIRVFCR+RP L + + + +T L
Sbjct: 27 LETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVEL 86
Query: 473 GRGIDIMQNGQ--KHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSG 530
+ ID + + FSFD+VF P SQ D+F +S L+QSALDGY +CIFAYGQTGSG
Sbjct: 87 -QSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSG 145
Query: 531 KTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTN 590
KTYTM G P+ G+IPR+++ +F + + + GW+YE++ + LEIYNE + DLLS
Sbjct: 146 KTYTM---DGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE 202
Query: 591 RDASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMN 650
+ + A N K + +V+++T V + +L+ A +R+ T N
Sbjct: 203 QKDMEIRMAKNNK---------NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGN 253
Query: 651 EQSSRSHFVFTLRISGLNESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSL 710
E+SSRSH V L + G + ++ G +NL+DLAGSE S T R+ ET+ IN+SL
Sbjct: 254 ERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSL 309
Query: 711 SSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCS 770
S L++VI AL +K+ DH+P+RNSKLT+LL P LGG+SKTLMF+N+SP ES+ S
Sbjct: 310 SELTNVILALLQKQ---DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKS 366
Query: 771 LRFAARVNACEIGTPRRQTSMRSS 794
LRFAA VN+C++ +R + +S
Sbjct: 367 LRFAASVNSCKMTKAKRNRYLNNS 390
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 296 bits (759), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 162/350 (46%), Positives = 217/350 (62%), Gaps = 11/350 (3%)
Query: 437 LKGNIRVFCRVRPLLPD--DSSGSEGKLISYPTTTEALGRGIDIMQN-GQKHSFSFDRVF 493
++GNIRV+CR+RP L + +S S + + + + +QN Q H F FD++F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 494 MPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLE 553
++ DVF E+ QLVQS+LDGY VCIFAYGQTGSGKT+TM+ PG G+IP ++
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML-NPG----DGIIPSTIS 115
Query: 554 QIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDASG 613
IF L ++GW Y++ +EIYNE I DLL + D + E+ G ++ I+HD
Sbjct: 116 HIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRS--DNNNKEDTSIGLKHEIRHDQET 173
Query: 614 NTHVTDLTVVDVCSTKE-VSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTE 672
T ++E V +L +A RS T NE SSRSH +F + +SG N T
Sbjct: 174 KTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTG 233
Query: 673 QQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPF 732
G LNL+DLAGS R++ S GDRL+ETQ INKSLS L DVI AL + + + H+PF
Sbjct: 234 AHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPF 293
Query: 733 RNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAARVNACEI 782
RNSKLTYLLQ L GDSKTLMFVNISP +S + E+L SLRFA++VN+ +
Sbjct: 294 RNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 296 bits (758), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 162/350 (46%), Positives = 217/350 (62%), Gaps = 11/350 (3%)
Query: 437 LKGNIRVFCRVRPLLPD--DSSGSEGKLISYPTTTEALGRGIDIMQN-GQKHSFSFDRVF 493
++GNIRV+CR+RP L + +S S + + + + +QN Q H F FD++F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 494 MPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLE 553
++ DVF E+ QLVQS+LDGY VCIFAYGQTGSGKT+TM+ PG G+IP ++
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML-NPG----DGIIPSTIS 115
Query: 554 QIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDASG 613
IF L ++GW Y++ +EIYNE I DLL + D + E+ G ++ I+HD
Sbjct: 116 HIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRS--DNNNKEDTSIGLKHEIRHDQET 173
Query: 614 NTHVTDLTVVDVCSTKE-VSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTE 672
T ++E V +L +A RS T NE SS SH +F + +SG N T
Sbjct: 174 KTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTG 233
Query: 673 QQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPF 732
G LNL+DLAGSER++ S GDRL+ETQ INKSLS L DVI AL + + + H+PF
Sbjct: 234 AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPF 293
Query: 733 RNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAARVNACEI 782
RNSKLTYLLQ L GDSKTLMFVNISP +S + E+L SLRFA++VN+ +
Sbjct: 294 RNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 296 bits (757), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 162/350 (46%), Positives = 217/350 (62%), Gaps = 11/350 (3%)
Query: 437 LKGNIRVFCRVRPLLPD--DSSGSEGKLISYPTTTEALGRGIDIMQN-GQKHSFSFDRVF 493
++GNIRV+CR+RP L + +S S + + + + +QN Q H F FD++F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 494 MPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLE 553
++ DVF E+ QLVQS+LDGY VCIFAYGQTGSGKT+TM+ PG G+IP ++
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML-NPG----DGIIPSTIS 115
Query: 554 QIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDASG 613
IF L ++GW Y++ +EIYNE I DLL + D + E+ G ++ I+HD
Sbjct: 116 HIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRS--DNNNKEDTSIGLKHEIRHDQET 173
Query: 614 NTHVTDLTVVDVCSTKE-VSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTE 672
T ++E V +L +A RS T NE SSRSH +F + +SG N T
Sbjct: 174 KTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTG 233
Query: 673 QQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPF 732
G LNL+DLAGSER++ S GDRL+ETQ I KSLS L DVI AL + + + H+PF
Sbjct: 234 AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPF 293
Query: 733 RNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAARVNACEI 782
RNSKLTYLLQ L GDSKTLMFVNISP +S + E+L SLRFA++VN+ +
Sbjct: 294 RNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 294 bits (753), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 163/384 (42%), Positives = 236/384 (61%), Gaps = 22/384 (5%)
Query: 413 LEDAEYKLIEGEKLRKRLHNTILELKGNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEAL 472
LE + +L + RK LHNT+++L+GNIRVFCR+RP L + + + +T L
Sbjct: 30 LETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVEL 89
Query: 473 GRGIDIMQNGQ--KHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSG 530
+ ID + + FSFD+VF P SQ D+F +S L+QSALDGY +CIFAYGQTGSG
Sbjct: 90 -QSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSG 148
Query: 531 KTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTN 590
KTYTM G P+ G+IPR+++ +F + + + GW+YE++ + LEIYNE + DLLS
Sbjct: 149 KTYTM---DGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE 205
Query: 591 RDASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMN 650
+ + A N K + +V+++T V + +L+ A +R+ T N
Sbjct: 206 QKDMEIRMAKNNK---------NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGN 256
Query: 651 EQSSRSHFVFTLRISGLNESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSL 710
E+SSRSH V L + G + ++ G +NL+DLAGSE S T R+ ET+ I +SL
Sbjct: 257 ERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNIKRSL 312
Query: 711 SSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCS 770
S L++VI AL +K+ DH+P+RNSKLT+LL P LGG+SKTLMF+N+SP ES+ S
Sbjct: 313 SELTNVILALLQKQ---DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKS 369
Query: 771 LRFAARVNACEIGTPRRQTSMRSS 794
LRFAA VN+C++ +R + +S
Sbjct: 370 LRFAASVNSCKMTKAKRNRYLNNS 393
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 294 bits (752), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 163/384 (42%), Positives = 236/384 (61%), Gaps = 22/384 (5%)
Query: 413 LEDAEYKLIEGEKLRKRLHNTILELKGNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEAL 472
LE + +L + RK LHNT+++L+ NIRVFCR+RP L + + + +T L
Sbjct: 33 LETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVEL 92
Query: 473 GRGIDIMQNGQ--KHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSG 530
+ ID + + FSFD+VF P SQ D+F +S L+QSALDGY +CIFAYGQTGSG
Sbjct: 93 -QSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSG 151
Query: 531 KTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTN 590
KTYTM G P+ G+IPR+++ +F + + + GW+YE++ + LEIYNE + DLLS
Sbjct: 152 KTYTM---DGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE 208
Query: 591 RDASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMN 650
+ + A N K + +V+++T V + +L+ A +R+ T N
Sbjct: 209 QKDMEIRMAKNNK---------NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGN 259
Query: 651 EQSSRSHFVFTLRISGLNESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSL 710
E+SSRSH V L + G + ++ G +NL+DLAGSE S T R+ ET+ IN+SL
Sbjct: 260 ERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSL 315
Query: 711 SSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCS 770
S L++VI AL +K+ DH+P+RNSKLT+LL P LGG+SKTLMF+N+SP ES+ S
Sbjct: 316 SELTNVILALLQKQ---DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKS 372
Query: 771 LRFAARVNACEIGTPRRQTSMRSS 794
LRFAA VN+C++ +R + +S
Sbjct: 373 LRFAASVNSCKMTKAKRNRYLNNS 396
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 293 bits (749), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 161/372 (43%), Positives = 232/372 (62%), Gaps = 22/372 (5%)
Query: 413 LEDAEYKLIEGEKLRKRLHNTILELKGNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEAL 472
LE + +L + RK LHNT+++L+GNIRVFCR+RP L + + + +T L
Sbjct: 30 LETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVEL 89
Query: 473 GRGIDIMQNGQ--KHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSG 530
+ ID + + FSFD+VF P SQ D+F +S L+QSALDGY +CIFAYGQ+GSG
Sbjct: 90 -QSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQSGSG 148
Query: 531 KTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTN 590
KTYTM G P+ G+IPR+++ +F + + + GW+YE++ + LEIYNE + DLLS
Sbjct: 149 KTYTM---DGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE 205
Query: 591 RDASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMN 650
+ + A N K + +V+++T V + +L+ A +R+ T N
Sbjct: 206 QKDMEIRMAKNNK---------NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGN 256
Query: 651 EQSSRSHFVFTLRISGLNESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSL 710
E+SSRSH V L + G + ++ G +NL+DLAGSE S T R+ ET+ IN+SL
Sbjct: 257 ERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSL 312
Query: 711 SSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCS 770
S L++VI AL +K+ DH+P+RNSKLT+LL P LGG+SKTLMF+N+SP ES+ S
Sbjct: 313 SELTNVILALLQKQ---DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKS 369
Query: 771 LRFAARVNACEI 782
LRFAA VN+C++
Sbjct: 370 LRFAASVNSCKM 381
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 291 bits (744), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 168/359 (46%), Positives = 224/359 (62%), Gaps = 30/359 (8%)
Query: 437 LKGNIRVFCRVRPLLPDDSSGSEGK---LISYPTTTE---------ALGRGIDIMQNGQK 484
LKGNIRVFCR+R + SS S +I Y + + R I+ N
Sbjct: 372 LKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNIN--NNFSN 429
Query: 485 HSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDL 544
F FD++F ++S + VF E+SQL+Q +LDG VC+FAYGQTGSGKT+TM HP
Sbjct: 430 LRFLFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM----SHP-T 484
Query: 545 KGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQ 604
G+IP SL++IF + L +GW Y ++ +EIYNE I DLL+ D + +
Sbjct: 485 NGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNT--------K 536
Query: 605 YAIKHD-ASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLR 663
Y IKHD +G T VT+++ +D+ S ++ +L++A RS T+ N+ SSRSH +F +
Sbjct: 537 YEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIID 596
Query: 664 ISGLNESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKK 723
+ G N T++ G LNLIDLAGSERL+ S + GDRLKETQAINKSLS L DVI +L K
Sbjct: 597 LQGYNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLK 656
Query: 724 EKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAARVNACEI 782
+ HVP+RNSKLTYLL+ LGG+SKTLMFVNISP + E++ SLRFA +VN I
Sbjct: 657 DGS--HVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRI 713
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 276 bits (705), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 152/364 (41%), Positives = 229/364 (62%), Gaps = 20/364 (5%)
Query: 427 RKRLHNTILELKGNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHS 486
RKR +NTI ++KG IRV+CR+RPL +SS E +++ TT + + +K
Sbjct: 1 RKRYYNTIEDMKGKIRVYCRIRPLNEKESSEREKQML---TTVDEFTVEHPWKDDKRKQH 57
Query: 487 FSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKG 546
+DRVF SQ+D+F + LVQSA+DGY VCIFAYGQTGSGKT+T+ G +P G
Sbjct: 58 I-YDRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNP---G 113
Query: 547 LIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYA 606
L PR+ +++F + S+ + + ++ M+E+Y +T+ DLL + A RL +
Sbjct: 114 LTPRATKELFNILKRD-SKRFSFSLKAYMVELYQDTLVDLL-LPKSARRL-------KLE 164
Query: 607 IKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISG 666
IK D+ G V ++T + + + +E+ +L+R + R V T MNE+SSRSH + ++ I
Sbjct: 165 IKKDSKGMVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIES 224
Query: 667 LNESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKK 726
++ T+ +G L+ +DLAGSER+ KSGS G++LKE Q+INKSLS+L DVI AL+ +
Sbjct: 225 IDLQTQSAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQ- 283
Query: 727 EDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAARVNACEIGTPR 786
H+P+RN KLT L+ LGG++KTLMFVN+SP S++ E+ SL +A+RV + P
Sbjct: 284 --HIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTI-VNDPS 340
Query: 787 RQTS 790
+ S
Sbjct: 341 KHIS 344
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 275 bits (702), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 156/346 (45%), Positives = 211/346 (60%), Gaps = 19/346 (5%)
Query: 438 KGNIRVFCRVRPLLPDDSSGSEG-KLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPD 496
KGNIRV RVRP+ +D G E +++ +++ I ++ G+ SF D+VF P
Sbjct: 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSI---IHLLHKGKPVSFELDKVFSPQ 59
Query: 497 ESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIF 556
SQ+DVF E+ LV S +DG+ VCIFAYGQTG+GKTYTM G +P G+ R+L+ +F
Sbjct: 60 ASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENP---GINQRALQLLF 116
Query: 557 QTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDASGNTH 616
Q S W+Y + VS EIYNE +RDLL +LE + D SG +
Sbjct: 117 SEVQEKASD-WEYTITVSAAEIYNEVLRDLLG-KEPQEKLE-------IRLCPDGSGQLY 167
Query: 617 VTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQQVQ 676
V LT V S +++ + + +R+ T +NE SSRSH + + + G++ ST +
Sbjct: 168 VPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTT 227
Query: 677 GILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSK 736
G LNL+DLAGSER+ KSG+ G RL+E Q INKSLS+L DVI AL ++ HVPFRNSK
Sbjct: 228 GKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL---RSRQGHVPFRNSK 284
Query: 737 LTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAARVNACEI 782
LTYLLQ L GDSKTLM V +SP + E+L SL+FA RV + E+
Sbjct: 285 LTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 262 bits (669), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 147/361 (40%), Positives = 219/361 (60%), Gaps = 32/361 (8%)
Query: 436 ELKGNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGID------IMQNGQKHSFSF 489
++KG IRV+CR+RPL + E I R +D + ++ + +
Sbjct: 2 DMKGKIRVYCRLRPLCEKEIIAKERNAI----------RSVDEFTVEHLWKDDKAKQHMY 51
Query: 490 DRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIP 549
DRVF + +Q+DVF + LVQSA+DGY VCIFAYGQTGSGKT+T+ G +P GL P
Sbjct: 52 DRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNP---GLTP 108
Query: 550 RSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKH 609
R++ ++F+ + S + + ++ M+E+Y +T+ DLL + A RL + IK
Sbjct: 109 RAMSELFRIMKKD-SNKFSFSLKAYMVELYQDTLVDLL-LPKQAKRL-------KLDIKK 159
Query: 610 DASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNE 669
D+ G V ++TVV + + +E+ ++ R + R T MNEQSSRSH + ++ I N
Sbjct: 160 DSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNL 219
Query: 670 STEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDH 729
T+ +G L+ +DLAGSER+ KSGS G++LKE Q+INKSLS+L DVI AL+ + H
Sbjct: 220 QTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQ---H 276
Query: 730 VPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAARVNACEIGTPRRQT 789
+P+RN KLT L+ LGG++KTLMFVNISP S++ E+ SL +A+RV + + P +
Sbjct: 277 IPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSI-VNDPSKNV 335
Query: 790 S 790
S
Sbjct: 336 S 336
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 144/344 (41%), Positives = 202/344 (58%), Gaps = 25/344 (7%)
Query: 441 IRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKH----SFSFDRVFMPD 496
+RV R RP+ + + S K++ LG+ G H +F+FD V+ +
Sbjct: 23 VRVVVRCRPMNGKEKAASYDKVVDVDV---KLGQVSVKNPKGTAHEMPKTFTFDAVYDWN 79
Query: 497 ESQEDVFVE-ISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQI 555
Q +++ E LV S L G+ IFAYGQTG+GKTYTM G G P+ +G+IP S + I
Sbjct: 80 AKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHI 139
Query: 556 FQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDASGNT 615
F T S SQ +Y ++ S LEIY E IRDLLS ++ RLE +K
Sbjct: 140 F-THIS-RSQNQQYLVRASYLEIYQEEIRDLLSKDQ-TKRLE---------LKERPDTGV 187
Query: 616 HVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSH--FVFTLRISGLNESTEQ 673
+V DL+ S KE+ ++++ +RSVG T MNE SSRSH FV T+ S + E
Sbjct: 188 YVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGEN 247
Query: 674 QVQ-GILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPF 732
++ G LNL+DLAGSER +K+G+ G+RLKE IN SLS+L +VI AL + K H+P+
Sbjct: 248 HIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALV--DGKSTHIPY 305
Query: 733 RNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
R+SKLT LLQ LGG++KT+M N+ P + +V E+L +LR+A R
Sbjct: 306 RDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANR 349
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 218 bits (556), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 126/295 (42%), Positives = 178/295 (60%), Gaps = 20/295 (6%)
Query: 486 SFSFDRVFMPDESQEDVF-VEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKP-GHPD 543
SF+FDRVF Q D+F I V L+GY +FAYGQTG+GK+YTMMG PD
Sbjct: 48 SFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPD 107
Query: 544 LKGLIPRSLEQIFQTRQSLLSQG--WKYEMQVSMLEIYNETIRDLLSTNRDASRLENACN 601
+G+IPR +EQIF S+LS +Y ++VS +EIY E IRDLL+ D
Sbjct: 108 GRGVIPRIVEQIFT---SILSSAANIEYTVRVSYMEIYMERIRDLLAPQND--------- 155
Query: 602 GKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFT 661
+ + + +V L + V S +EV ++ R ++R+V T MN++SSRSH +F
Sbjct: 156 --NLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFV 213
Query: 662 LRISGLNESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALA 721
+ I+ N T G L L+DLAGSE++ K+G++G L+E + INKSLS+L VI AL
Sbjct: 214 ITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALT 273
Query: 722 KKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
+ K HVP+R+SKLT +LQ LGG+S+T + +N SP + + E+L +LRF R
Sbjct: 274 --DGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMR 326
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 214 bits (545), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 128/311 (41%), Positives = 183/311 (58%), Gaps = 28/311 (9%)
Query: 482 GQKHSFSFDRVFMP-DES-------QEDVFVEISQ-LVQSALDGYKVCIFAYGQTGSGKT 532
GQ F++D F DES Q+ VF + + ++Q+A DGY CIFAYGQTGSGK+
Sbjct: 48 GQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKS 107
Query: 533 YTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRD 592
YTMMG P GLIPR +F+ Q ++ ++++VS +EIYNE +RDLL
Sbjct: 108 YTMMGTADQP---GLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGS 164
Query: 593 ASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQ 652
L+ ++ + +V L+ + V S K++ L+ SR+V T MNE+
Sbjct: 165 RQTLK---------VREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEE 215
Query: 653 SSRSHFVFTLRIS----GLNESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINK 708
SSRSH VF + ++ + T + G L+L+DLAGSER +K+G+ GDRLKE INK
Sbjct: 216 SSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINK 275
Query: 709 SLSSLSDVIFALAKK---EKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVG 765
SL++L VI ALA + + K VP+R+S LT+LL+ LGG+SKT M +SP A +
Sbjct: 276 SLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYD 335
Query: 766 ESLCSLRFAAR 776
E+L +LR+A R
Sbjct: 336 ETLSTLRYADR 346
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 206 bits (525), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 132/339 (38%), Positives = 194/339 (57%), Gaps = 27/339 (7%)
Query: 440 NIRVFCRVRPLLPDDSSGSEG-KLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDES 498
NI+V CR RPL ++S + G K I A +G D + K ++FDRVF S
Sbjct: 8 NIKVMCRFRPL--NESEVNRGDKYI-------AKFQGEDTVVIASK-PYAFDRVFQSSTS 57
Query: 499 QEDVFVEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQ 557
QE V+ + ++ +V+ L+GY IFAYGQT SGKT+TM GK P+ G+IPR ++ IF
Sbjct: 58 QEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFN 117
Query: 558 TRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDASGNTHV 617
S+ + ++ ++VS EIY + IRDLL ++ ++ D + +V
Sbjct: 118 YIYSM-DENLEFHIKVSYFEIYLDKIRDLLDVSK-----------TNLSVHEDKNRVPYV 165
Query: 618 TDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQQVQG 677
T VCS EV +D +R V T MNE SSRSH +F + + N TEQ++ G
Sbjct: 166 KGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSG 225
Query: 678 ILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKL 737
L L+DLAGSE++SK+G+ G L E + INKSLS+L +VI ALA+ +VP+R+SK+
Sbjct: 226 KLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST---YVPYRDSKM 282
Query: 738 TYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
T +LQ LGG+ +T + + SP + + E+ +L F R
Sbjct: 283 TRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQR 321
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 206 bits (525), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 132/339 (38%), Positives = 194/339 (57%), Gaps = 27/339 (7%)
Query: 440 NIRVFCRVRPLLPDDSSGSEG-KLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDES 498
NI+V CR RPL ++S + G K I A +G D + K ++FDRVF S
Sbjct: 8 NIKVMCRFRPL--NESEVNRGDKYI-------AKFQGEDTVVIASK-PYAFDRVFQSSTS 57
Query: 499 QEDVFVEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQ 557
QE V+ + ++ +V+ L+GY IFAYGQT SGKT+TM GK P+ G+IPR ++ IF
Sbjct: 58 QEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFN 117
Query: 558 TRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDASGNTHV 617
S+ + ++ ++VS EIY + IRDLL ++ ++ D + +V
Sbjct: 118 YIYSM-DENLEFHIKVSYFEIYLDKIRDLLDVSK-----------TNLSVHEDKNRVPYV 165
Query: 618 TDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQQVQG 677
T VCS EV +D +R V T MNE SSRSH +F + + N TEQ++ G
Sbjct: 166 KGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSG 225
Query: 678 ILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKL 737
L L+DLAGSE++SK+G+ G L E + INKSLS+L +VI ALA+ +VP+R+SK+
Sbjct: 226 KLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST---YVPYRDSKM 282
Query: 738 TYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
T +LQ LGG+ +T + + SP + + E+ +L F R
Sbjct: 283 TRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQR 321
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 205 bits (521), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 126/338 (37%), Positives = 190/338 (56%), Gaps = 25/338 (7%)
Query: 440 NIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDESQ 499
NI+V CR RPL + + + + + +G D + K ++FDRVF SQ
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYVAKF--------QGEDTVMIASK-PYAFDRVFQSSTSQ 58
Query: 500 EDVFVEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQT 558
E V+ + ++ +V+ L+GY IFAYGQT SGK +TM GK P+ G+IPR ++ IF
Sbjct: 59 EQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNY 118
Query: 559 RQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDASGNTHVT 618
S+ + ++ ++VS EIY + IRDLL ++ ++ D + +V
Sbjct: 119 IYSM-DENLEFHIKVSYFEIYLDKIRDLLDVSK-----------TNLSVHEDKNRVPYVK 166
Query: 619 DLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQQVQGI 678
T VCS EV +D +R V T MNE SSRSH +F + + N TEQ++ G
Sbjct: 167 GCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGK 226
Query: 679 LNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLT 738
L L+DLAGSE++SK+G+ G L E + INKSLS+L +VI ALA+ +VP+R+SK+T
Sbjct: 227 LYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST---YVPYRDSKMT 283
Query: 739 YLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
+LQ LGG+ +T + + SP + + E+ +L F R
Sbjct: 284 RILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQR 321
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 203 bits (516), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 123/319 (38%), Positives = 175/319 (54%), Gaps = 42/319 (13%)
Query: 486 SFSFDRVFMPDESQEDVFVE-ISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDL 544
+F+FD V+ Q D++ E + L+ S L G+ +FAYGQTG+GKTYTM G P+L
Sbjct: 69 TFTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPEL 128
Query: 545 KGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQ 604
+G+IP + E IF SQ +Y ++ S LEIY E IRDLLS GK+
Sbjct: 129 RGVIPNAFEHIFTHISR--SQNQQYLVRASYLEIYQEEIRDLLSKE----------PGKR 176
Query: 605 YAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRI 664
+K + ++ DL+ + KE+ ++++ +R+VG T MNE SSRSH +F + +
Sbjct: 177 LELKENPETGVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITV 236
Query: 665 SGLNESTEQQVQ---GILNLIDLAGSERLSKSGST------------------------G 697
++ Q G LNL+DLAGSER +K+G G
Sbjct: 237 ECSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGG 296
Query: 698 DRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNI 757
+R KE IN SLS+L +VI ALA + H+P+R+SKLT LLQ LGG++KT+M +
Sbjct: 297 ERPKEASKINLSLSALGNVIAALAG--NRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATL 354
Query: 758 SPEASSVGESLCSLRFAAR 776
P + S ESL +LRFA R
Sbjct: 355 GPASHSYDESLSTLRFANR 373
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 198 bits (504), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 187/337 (55%), Gaps = 21/337 (6%)
Query: 441 IRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDESQE 500
I+V CR RPL + ++ +P E I I + FD+VF P+ SQE
Sbjct: 13 IKVVCRFRPLNDSEEKAGSKFVVKFPNNVEE--NCISIAGK----VYLFDKVFKPNASQE 66
Query: 501 DVFVEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTR 559
V+ E ++ +V L GY IFAYGQT SGKT+TM G G +G+IPR + IF
Sbjct: 67 KVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHI 126
Query: 560 QSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDASGNTHVTD 619
++ ++ ++VS EIY + IRDLL D S++ ++ D + +V
Sbjct: 127 YAM-EVNLEFHIKVSYYEIYMDKIRDLL----DVSKV-------NLSVHEDKNRVPYVKG 174
Query: 620 LTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQQVQGIL 679
T V S ++V +++ +R + T MNE SSRSH VF + + N ++++ G L
Sbjct: 175 ATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKL 234
Query: 680 NLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTY 739
L+DLAGSE++SK+G+ G L E + INKSLS+L +VI ALA K H+P+R+SKLT
Sbjct: 235 YLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKT--HIPYRDSKLTR 292
Query: 740 LLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
+LQ LGG+++T + + SP + + E+ +L F R
Sbjct: 293 ILQESLGGNARTTIVICCSPASFNESETKSTLDFGRR 329
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/294 (41%), Positives = 170/294 (57%), Gaps = 22/294 (7%)
Query: 486 SFSFDRVFMPDESQEDVF-VEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDL 544
+F+FD V+ +F L+ + L+G+ IFAYGQTG+GKT+TM G P
Sbjct: 57 TFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEP-- 114
Query: 545 KGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQ 604
G IP S + +F S S + + S LE+YNE IRDL+ N +
Sbjct: 115 -GAIPNSFKHLFDAINSS-SSNQNFLVIGSYLELYNEEIRDLIKNN------------TK 160
Query: 605 YAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRI 664
+K D + +V L++ V + E+S L+D+ +R V TQMN+ SSRSH +F +RI
Sbjct: 161 LPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRI 220
Query: 665 --SGLNESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAK 722
S + E+ E G LNL+DLAGSER SK+G+TG+ L E IN SLS+L VI L +
Sbjct: 221 ECSEVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVE 280
Query: 723 KEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
H+P+R+SKLT LLQ LGG+SKTLM NISP +++ E++ +LR+A R
Sbjct: 281 GAT---HIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADR 331
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 195 bits (496), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 129/344 (37%), Positives = 192/344 (55%), Gaps = 29/344 (8%)
Query: 438 KGNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDE 497
+G + V RVRPL + S E + + T I Q SF+FDRVF +E
Sbjct: 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNV------IYQVDGSKSFNFDRVFHGNE 56
Query: 498 SQEDVFVEIS-QLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIF 556
+ ++V+ EI+ ++ SA+ GY IFAYGQT SGKTYTMMG H G+IPR++ IF
Sbjct: 57 TTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDH---LGVIPRAIHDIF 113
Query: 557 QTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDASGNTH 616
Q + + ++ ++VS +EIYNETI DLL + K I+ D + N +
Sbjct: 114 QKIKKFPDR--EFLLRVSYMEIYNETITDLLCGTQKM---------KPLIIREDVNRNVY 162
Query: 617 VTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQQVQ 676
V DLT V +++ + + SR G+T+MN++SSRSH +F + + + +
Sbjct: 163 VADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCE 222
Query: 677 GI-----LNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVP 731
G LNL+DLAGSER +++G+ G RLKE IN+SL L VI L+ + +
Sbjct: 223 GSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVG-GFIN 281
Query: 732 FRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAA 775
+R+SKLT +LQ LGG++KT + I+P S E+L +L+FA+
Sbjct: 282 YRDSKLTRILQNSLGGNAKTRIICTITP--VSFDETLTALQFAS 323
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 195 bits (495), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 129/361 (35%), Positives = 191/361 (52%), Gaps = 37/361 (10%)
Query: 439 GNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQ-KHSFSFDRVFMPDE 497
+++V RVRP + S +I +T + ++ Q + SFSFD +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTI---VNPKQPKETPKSFSFDYSYWSHT 60
Query: 498 SQED--------VFVEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLI 548
S ED V+ +I + ++Q A +GY VCIFAYGQTG+GK+YTMMGK D +G+I
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ-EKDQQGII 119
Query: 549 PRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIK 608
P+ E +F + Y ++VS +EIY E +RDLL N N ++
Sbjct: 120 PQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL----------NPKNKGNLRVR 169
Query: 609 HDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLN 668
+V DL+ + V S ++ L+D +R+V T MNE SSRSH VF + +
Sbjct: 170 EHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKR 229
Query: 669 ESTEQQVQ----GILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKE 724
E + ++L+DLAGSER +G+ G RLKE INKSL++L VI ALA+ +
Sbjct: 230 HDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMD 289
Query: 725 K---------KEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAA 775
K D +P+R+S LT+LL+ LGG+S+T M +SP + E+L +LR+A
Sbjct: 290 SGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYAD 349
Query: 776 R 776
R
Sbjct: 350 R 350
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 195 bits (495), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 129/361 (35%), Positives = 191/361 (52%), Gaps = 37/361 (10%)
Query: 439 GNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQ-KHSFSFDRVFMPDE 497
+++V RVRP + S +I +T + ++ Q + SFSFD +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTI---VNPKQPKETPKSFSFDYSYWSHT 60
Query: 498 SQED--------VFVEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLI 548
S ED V+ +I + ++Q A +GY VCIFAYGQTG+GK+YTMMGK D +G+I
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ-EKDQQGII 119
Query: 549 PRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIK 608
P+ E +F + Y ++VS +EIY E +RDLL N N ++
Sbjct: 120 PQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL----------NPKNKGNLRVR 169
Query: 609 HDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLN 668
+V DL+ + V S ++ L+D +R+V T MNE SSRSH VF + +
Sbjct: 170 EHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKR 229
Query: 669 ESTEQQVQ----GILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKE 724
E + ++L+DLAGSER +G+ G RLKE INKSL++L VI ALA+ +
Sbjct: 230 HDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMD 289
Query: 725 K---------KEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAA 775
K D +P+R+S LT+LL+ LGG+S+T M +SP + E+L +LR+A
Sbjct: 290 SGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYAD 349
Query: 776 R 776
R
Sbjct: 350 R 350
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 195 bits (495), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 135/354 (38%), Positives = 197/354 (55%), Gaps = 37/354 (10%)
Query: 440 NIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDESQ 499
NI+V+ RVRPL + +++ E + R + + F+FDR F P+ Q
Sbjct: 24 NIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTR--HTLDSKLTKKFTFDRSFGPESKQ 81
Query: 500 EDVF-VEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLK---------GLIP 549
DV+ V +S L++ L+GY +FAYGQTG+GKT+TM+G +LK G+IP
Sbjct: 82 CDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNET-AELKSSWEDDSDIGIIP 140
Query: 550 RSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKH 609
R+L +F L +Y M++S LE+YNE + DLLST+ D +++ I
Sbjct: 141 RALSHLFD---ELRMMEVEYTMRISYLELYNEELCDLLSTD-DTTKIR---------IFD 187
Query: 610 DAS--GNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTL----R 663
D++ G+ + L + V S +V LL++ R T MN QSSRSH VF++ R
Sbjct: 188 DSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIR 247
Query: 664 ISGLNESTEQQVQGILNLIDLAGSERLSKSGS-TGDRLKETQAINKSLSSLSDVIFALAK 722
+G+ E + G LNL+DLAGSE +SK+G+ G R++ET IN+SL +L VI AL
Sbjct: 248 ENGI-EGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD 306
Query: 723 KEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
+ HVP+R SKLT LLQ LGG +KT + ISP + E+L +L +A R
Sbjct: 307 RAP---HVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHR 357
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 129/359 (35%), Positives = 190/359 (52%), Gaps = 37/359 (10%)
Query: 441 IRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQ-KHSFSFDRVFMPDESQ 499
++V RVRP + S +I +T + ++ Q + SFSFD + S
Sbjct: 22 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTI---VNPKQPKETPKSFSFDYSYWSHTSP 78
Query: 500 ED--------VFVEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPR 550
ED V+ +I + ++Q A +GY VCIFAYGQTG+GK+YTMMGK D +G+IP+
Sbjct: 79 EDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ-EKDQQGIIPQ 137
Query: 551 SLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHD 610
E +F + Y ++VS +EIY E +RDLL N N ++
Sbjct: 138 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL----------NPKNKGNLRVREH 187
Query: 611 ASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNES 670
+V DL+ + V S ++ L+D +R+V T MNE SSRSH VF + +
Sbjct: 188 PLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHD 247
Query: 671 TEQQVQ----GILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEK- 725
E + ++L+DLAGSER +G+ G RLKE INKSL++L VI ALA+ +
Sbjct: 248 AETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSG 307
Query: 726 --------KEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
K D +P+R+S LT+LL+ LGG+S+T M +SP + E+L +LR+A R
Sbjct: 308 PNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADR 366
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 129/361 (35%), Positives = 190/361 (52%), Gaps = 37/361 (10%)
Query: 439 GNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQ-KHSFSFDRVFMPDE 497
+++V RVRP + S +I +T + ++ Q + SFSFD +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTI---VNPKQPKETPKSFSFDYSYWSHT 60
Query: 498 SQED--------VFVEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLI 548
S ED V+ +I + ++Q A +GY VCIFAYGQTG+GK+YTMMGK D +G+I
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK-QEKDQQGII 119
Query: 549 PRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIK 608
P+ E +F + Y ++VS +EIY E +RDLL N N ++
Sbjct: 120 PQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL----------NPKNKGNLRVR 169
Query: 609 HDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLN 668
+V DL+ + V S ++ L+D R+V T MNE SSRSH VF + +
Sbjct: 170 EHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKR 229
Query: 669 ESTEQQVQ----GILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKE 724
E + ++L+DLAGSER +G+ G RLKE INKSL++L VI ALA+ +
Sbjct: 230 HDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMD 289
Query: 725 K---------KEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAA 775
K D +P+R+S LT+LL+ LGG+S+T M +SP + E+L +LR+A
Sbjct: 290 SGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYAD 349
Query: 776 R 776
R
Sbjct: 350 R 350
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 130/355 (36%), Positives = 195/355 (54%), Gaps = 35/355 (9%)
Query: 440 NIRVFCRVRPL-LPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDES 498
NI+V RVRP L + + + + S P E R + + +++FD VF
Sbjct: 18 NIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 499 QEDVFVEI-SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGK--PGH------PDLKGLIP 549
Q DV+ + + ++ + GY IFAYGQTG+GKT+TM G+ P L G+IP
Sbjct: 78 QIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGIIP 137
Query: 550 RSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASR----LENACNGKQY 605
R+L QIF+ L G ++ ++VS+LEIYNE + DLL+ + D S ++ N +
Sbjct: 138 RTLHQIFE---KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 606 AIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRIS 665
IK L + V + EV +L++ A R+ T MN SSRSH VF++ I
Sbjct: 195 IIK----------GLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 244
Query: 666 GLNEST---EQQVQ-GILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALA 721
+ E+T E+ V+ G LNL+DLAGSE + +SG+ R +E IN+SL +L VI AL
Sbjct: 245 -MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALV 303
Query: 722 KKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
++ HVP+R SKLT +LQ LGG ++T + ISP + ++ E+L +L +A R
Sbjct: 304 ERTP---HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 355
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 190/352 (53%), Gaps = 38/352 (10%)
Query: 441 IRVFCRVRPLLPDDS-SGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDESQ 499
+RV RVRPLLP + G + L P LGR + G+ F F V D Q
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEP----GLGR----VTLGRDRHFGFHVVLAEDAGQ 64
Query: 500 EDVFVEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDL----KGLIPRSLEQ 554
E V+ Q L+++ +G+ +FAYGQTGSGKTYTM G+ L +G++PR++ +
Sbjct: 65 EAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM-GEASVASLLEDEQGIVPRAMAE 123
Query: 555 IFQTRQSLLSQGWKYE--MQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDAS 612
F+ L+ + + + VS LE+Y E RDLL E + ++ D
Sbjct: 124 AFK----LIDENDLLDCLVHVSYLEVYKEEFRDLL---------EVGTASRDIQLREDER 170
Query: 613 GNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTE 672
GN + + VDV EV LL+ +R G T +N SSRSH VFT+ + +
Sbjct: 171 GNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPS 230
Query: 673 --------QQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKE 724
Q + + +DLAGSER+ K+GSTG+RLKE+ IN SL +L +VI AL +
Sbjct: 231 RLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQ 290
Query: 725 KKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
++ H+P+R+SK+T +L+ LGG++KT+M +SP +S E+L +L +A+R
Sbjct: 291 RRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASR 342
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 128/355 (36%), Positives = 192/355 (54%), Gaps = 35/355 (9%)
Query: 440 NIRVFCRVRPL-LPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDES 498
NI+V R RP L + + + + P E R + + +++FD VF
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 499 QEDVFVEI-SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGK--PGH------PDLKGLIP 549
Q DV+ + ++ + GY IFAYGQTG+GKT+TM G+ P L G+IP
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 550 RSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASR----LENACNGKQY 605
R+L QIF+ L G ++ ++VS+LEIYNE + DLL+ + D S ++ N +
Sbjct: 138 RTLHQIFE---KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 606 AIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRIS 665
IK L + V + EV +L++ A R+ T MN SSRSH VF++ I
Sbjct: 195 IIK----------GLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 244
Query: 666 GLNEST---EQQVQ-GILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALA 721
+ E+T E+ V+ G LNL+DLAGSE + +SG+ R +E IN+SL +L VI AL
Sbjct: 245 -MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALV 303
Query: 722 KKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
++ HVP+R SKLT +LQ LGG ++T + ISP + ++ E+L +L +A R
Sbjct: 304 ERTP---HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 355
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 128/355 (36%), Positives = 192/355 (54%), Gaps = 35/355 (9%)
Query: 440 NIRVFCRVRPL-LPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDES 498
NI+V R RP L + + + + P E R + + +++FD VF
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 499 QEDVFVEI-SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGK--PGH------PDLKGLIP 549
Q DV+ + ++ + GY IFAYGQTG+GKT+TM G+ P L G+IP
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGIIP 137
Query: 550 RSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASR----LENACNGKQY 605
R+L QIF+ L G ++ ++VS+LEIYNE + DLL+ + D S ++ N +
Sbjct: 138 RTLHQIFE---KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 606 AIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRIS 665
IK L + V + EV +L++ A R+ T MN SSRSH VF++ I
Sbjct: 195 IIK----------GLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 244
Query: 666 GLNEST---EQQVQ-GILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALA 721
+ E+T E+ V+ G LNL+DLAGSE + +SG+ R +E IN+SL +L VI AL
Sbjct: 245 -MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALV 303
Query: 722 KKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
++ HVP+R SKLT +LQ LGG ++T + ISP + ++ E+L +L +A R
Sbjct: 304 ERTP---HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 355
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 128/355 (36%), Positives = 192/355 (54%), Gaps = 35/355 (9%)
Query: 440 NIRVFCRVRPL-LPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDES 498
NI+V R RP L + + + + P E R + + +++FD VF
Sbjct: 17 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 76
Query: 499 QEDVFVEI-SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGK--PGH------PDLKGLIP 549
Q DV+ + ++ + GY IFAYGQTG+GKT+TM G+ P L G+IP
Sbjct: 77 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 136
Query: 550 RSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASR----LENACNGKQY 605
R+L QIF+ L G ++ ++VS+LEIYNE + DLL+ + D S ++ N +
Sbjct: 137 RTLHQIFE---KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 193
Query: 606 AIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRIS 665
IK L + V + EV +L++ A R+ T MN SSRSH VF++ I
Sbjct: 194 IIK----------GLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 243
Query: 666 GLNEST---EQQVQ-GILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALA 721
+ E+T E+ V+ G LNL+DLAGSE + +SG+ R +E IN+SL +L VI AL
Sbjct: 244 -MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALV 302
Query: 722 KKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
++ HVP+R SKLT +LQ LGG ++T + ISP + ++ E+L +L +A R
Sbjct: 303 ERTP---HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 354
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 128/355 (36%), Positives = 192/355 (54%), Gaps = 35/355 (9%)
Query: 440 NIRVFCRVRPL-LPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDES 498
NI+V R RP L + + + + P E R + + +++FD VF
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 499 QEDVFVEI-SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGK--PGHP------DLKGLIP 549
Q DV+ + ++ + GY IFAYGQTG+GKT+TM G+ P L G+IP
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGIIP 137
Query: 550 RSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASR----LENACNGKQY 605
R+L QIF+ L G ++ ++VS+LEIYNE + DLL+ + D S ++ N +
Sbjct: 138 RTLHQIFE---KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 606 AIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRIS 665
IK L + V + EV +L++ A R+ T MN SSRSH VF++ I
Sbjct: 195 IIK----------GLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 244
Query: 666 GLNEST---EQQVQ-GILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALA 721
+ E+T E+ V+ G LNL+DLAGSE + +SG+ R +E IN+SL +L VI AL
Sbjct: 245 -MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALV 303
Query: 722 KKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
++ HVP+R SKLT +LQ LGG ++T + ISP + ++ E+L +L +A R
Sbjct: 304 ERTP---HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 355
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 128/355 (36%), Positives = 192/355 (54%), Gaps = 35/355 (9%)
Query: 440 NIRVFCRVRPL-LPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDES 498
NI+V R RP L + + + + P E R + + +++FD VF
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 499 QEDVFVEI-SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGK--PGH------PDLKGLIP 549
Q DV+ + ++ + GY IFAYGQTG+GKT+TM G+ P L G+IP
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 550 RSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASR----LENACNGKQY 605
R+L QIF+ L G ++ ++VS+LEIYNE + DLL+ + D S ++ N +
Sbjct: 138 RTLHQIFE---KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 606 AIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRIS 665
IK L + V + EV +L++ A R+ T MN SSRSH VF++ I
Sbjct: 195 IIK----------GLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 244
Query: 666 GLNEST---EQQVQ-GILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALA 721
+ E+T E+ V+ G LNL+DLAGSE + +SG+ R +E IN+SL +L VI AL
Sbjct: 245 -MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALV 303
Query: 722 KKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
++ HVP+R SKLT +LQ LGG ++T + ISP + ++ E+L +L +A R
Sbjct: 304 ERTP---HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 355
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 128/355 (36%), Positives = 192/355 (54%), Gaps = 35/355 (9%)
Query: 440 NIRVFCRVRPL-LPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDES 498
NI+V R RP L + + + + P E R + + +++FD VF
Sbjct: 9 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 68
Query: 499 QEDVFVEI-SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGK--PGH------PDLKGLIP 549
Q DV+ + ++ + GY IFAYGQTG+GKT+TM G+ P L G+IP
Sbjct: 69 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 128
Query: 550 RSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASR----LENACNGKQY 605
R+L QIF+ L G ++ ++VS+LEIYNE + DLL+ + D S ++ N +
Sbjct: 129 RTLHQIFE---KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 185
Query: 606 AIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRIS 665
IK L + V + EV +L++ A R+ T MN SSRSH VF++ I
Sbjct: 186 IIK----------GLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 235
Query: 666 GLNEST---EQQVQ-GILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALA 721
+ E+T E+ V+ G LNL+DLAGSE + +SG+ R +E IN+SL +L VI AL
Sbjct: 236 -MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALV 294
Query: 722 KKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
++ HVP+R SKLT +LQ LGG ++T + ISP + ++ E+L +L +A R
Sbjct: 295 ERTP---HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 346
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 128/355 (36%), Positives = 192/355 (54%), Gaps = 35/355 (9%)
Query: 440 NIRVFCRVRPL-LPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDES 498
NI+V R RP L + + + + P E R + + +++FD VF
Sbjct: 20 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 79
Query: 499 QEDVFVEI-SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGK--PGH------PDLKGLIP 549
Q DV+ + ++ + GY IFAYGQTG+GKT+TM G+ P L G+IP
Sbjct: 80 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 139
Query: 550 RSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASR----LENACNGKQY 605
R+L QIF+ L G ++ ++VS+LEIYNE + DLL+ + D S ++ N +
Sbjct: 140 RTLHQIFE---KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 196
Query: 606 AIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRIS 665
IK L + V + EV +L++ A R+ T MN SSRSH VF++ I
Sbjct: 197 IIK----------GLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 246
Query: 666 GLNEST---EQQVQ-GILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALA 721
+ E+T E+ V+ G LNL+DLAGSE + +SG+ R +E IN+SL +L VI AL
Sbjct: 247 -MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALV 305
Query: 722 KKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
++ HVP+R SKLT +LQ LGG ++T + ISP + ++ E+L +L +A R
Sbjct: 306 ERTP---HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 357
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 186 bits (471), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 128/355 (36%), Positives = 192/355 (54%), Gaps = 35/355 (9%)
Query: 440 NIRVFCRVRPL-LPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDES 498
NI+V R RP L + + + + P E R + + +++FD VF
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 62
Query: 499 QEDVFVEI-SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGK--PGH------PDLKGLIP 549
Q DV+ + ++ + GY IFAYGQTG+GKT+TM G+ P L G+IP
Sbjct: 63 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 122
Query: 550 RSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASR----LENACNGKQY 605
R+L QIF+ L G ++ ++VS+LEIYNE + DLL+ + D S ++ N +
Sbjct: 123 RTLHQIFE---KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 179
Query: 606 AIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRIS 665
IK L + V + EV +L++ A R+ T MN SSRSH VF++ I
Sbjct: 180 IIK----------GLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 229
Query: 666 GLNEST---EQQVQ-GILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALA 721
+ E+T E+ V+ G LNL+DLAGSE + +SG+ R +E IN+SL +L VI AL
Sbjct: 230 -MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALV 288
Query: 722 KKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
++ HVP+R SKLT +LQ LGG ++T + ISP + ++ E+L +L +A R
Sbjct: 289 ERTP---HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 340
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 186 bits (471), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 177/329 (53%), Gaps = 52/329 (15%)
Query: 483 QKHSFSFDRVFMP----DE---SQEDVFVEISQ-LVQSALDGYKVCIFAYGQTGSGKTYT 534
++ SF+FD+ F DE +QE V+ + + + +GY CIFAYGQTGSGK+YT
Sbjct: 94 EEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYT 153
Query: 535 MMGKPGHPDLKGLIPRSLEQIFQTRQSLL--SQGWKYEMQVSMLEIYNETIRDLLSTNRD 592
MMG P P GLIPR+ E +FQ S + Y ++VS E+YNE +RDLL+
Sbjct: 154 MMGTPDQP---GLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLA---- 206
Query: 593 ASRLENACNGKQYAIK--HDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMN 650
N Y +K + +V DLT V V +E+ + SR+V T+MN
Sbjct: 207 ----PVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMN 262
Query: 651 EQSSRSHFVFTLRISGL------NESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQ 704
+ SSRSH VFT+ + + +++TE+ + + L+DLAGSER + +TG RL+E
Sbjct: 263 DTSSRSHAVFTIMLKQIHHDLETDDTTERSSR--IRLVDLAGSERAKSTEATGQRLREGS 320
Query: 705 AINKSLSSLSDVIFALAKKEKKEDH-------------------VPFRNSKLTYLLQPCL 745
INKSL++L VI ALA + VP+R+S LT+LL+ L
Sbjct: 321 NINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSL 380
Query: 746 GGDSKTLMFVNISPEASSVGESLCSLRFA 774
GG+SKT M ISP + E+L +LR+A
Sbjct: 381 GGNSKTAMIACISP--TDYDETLSTLRYA 407
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/355 (37%), Positives = 193/355 (54%), Gaps = 42/355 (11%)
Query: 441 IRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDI---------MQNGQKHSFSF-- 489
+ F RV+P DD + ++I Y R IDI + N Q+ +SF
Sbjct: 26 VHAFVRVKP--TDDFAH---EMIRYGDDK----RSIDIHLKKDIRRGVVNNQQTDWSFKL 76
Query: 490 DRVFMPDESQEDVFVEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLI 548
D V + D SQ+ V+ +++ +V ALDGY I YGQTG+GKTYTMMG + +G++
Sbjct: 77 DGV-LHDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGIL 135
Query: 549 PRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLST----NRDASRLENACNGKQ 604
PR+L+Q+F+ + + ++VS LEIYNE++ DLLST + + N +
Sbjct: 136 PRALQQVFRMIEERPTHAIT--VRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQG 193
Query: 605 YAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRI 664
IK L+V ++ LL +R + MN+ SSRSH +FT+ +
Sbjct: 194 VFIK----------GLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYL 243
Query: 665 SGLNE--STEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAK 722
+ S E+ + +NL+DLAGSERL KSGS G LKE INKSLS L I AL
Sbjct: 244 EAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALG- 302
Query: 723 KEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAARV 777
++K DH+PFR KLT+ L+ LGG+ ++ NI EA+ + E+L SLRFA+R+
Sbjct: 303 -DQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRM 356
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 179 bits (455), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 124/352 (35%), Positives = 188/352 (53%), Gaps = 38/352 (10%)
Query: 441 IRVFCRVRPLLPDDS-SGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDESQ 499
+RV RVRPLLP + G + L P LGR + G+ F F V D Q
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEP----GLGR----VTLGRDRHFGFHVVLAEDAGQ 64
Query: 500 EDVFVEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDL----KGLIPRSLEQ 554
E V+ Q L+++ +G+ +FAYGQTGSGKTYTM G+ L +G++PR++ +
Sbjct: 65 EAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM-GEASVASLLEDEQGIVPRAMAE 123
Query: 555 IFQTRQSLLSQGWKYE--MQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDAS 612
F+ L+ + + + VS LE+Y E RDLL E + ++ D
Sbjct: 124 AFK----LIDENDLLDCLVHVSYLEVYKEEFRDLL---------EVGTASRDIQLREDER 170
Query: 613 GNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTE 672
GN + + VDV EV LL+ +R G T +N SSRSH VFT+ + +
Sbjct: 171 GNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPS 230
Query: 673 --------QQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKE 724
Q + + +DLAGSER+ K+GSTG+ KE+ IN SL +L +VI AL +
Sbjct: 231 RLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQ 290
Query: 725 KKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
++ ++P+R+SK+T +L+ LGG++KT+M +SP +S E+L +L +A+R
Sbjct: 291 RRGSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASR 342
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 163/294 (55%), Gaps = 20/294 (6%)
Query: 487 FSFDRVFMPDESQEDVFVEISQ-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLK 545
F FD VF +Q +VF ++ +++S L+GY + AYG TG+GKT+TM+G P
Sbjct: 74 FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEP--- 130
Query: 546 GLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQY 605
G++ ++ +++ + + VS LE+YNE IRDLL N
Sbjct: 131 GVMYLTMLHLYKCMDEIKEEKI-CSTAVSYLEVYNEQIRDLL------------VNSGPL 177
Query: 606 AIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVF--TLR 663
A++ D V LT+ S++E+ +LLD +R+ T MN SSRSH VF LR
Sbjct: 178 AVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLR 237
Query: 664 ISGLNESTEQQVQ-GILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAK 722
S Q V+ ++LIDLAGSER S SG+ G R E IN+SL +L +VI ALA
Sbjct: 238 QQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALAD 297
Query: 723 KEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
++K H+P+RNSKLT LL+ LGG+ +T+M +SP + ++ +L++A R
Sbjct: 298 SKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANR 351
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 117/348 (33%), Positives = 188/348 (54%), Gaps = 39/348 (11%)
Query: 441 IRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDI----MQNGQKH----SFSFDRV 492
+RV R+RP + D ++G+ S P RG+D + N + H + FD
Sbjct: 23 VRVAVRLRPFV-DGTAGA-----SDPPCV----RGMDSCSLEIANWRNHQETLKYQFDAF 72
Query: 493 FMPDESQEDVFV-EISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRS 551
+ +Q+D++ + +++ L+G + AYG TG+GKT+TM+G P P G+IPR+
Sbjct: 73 YGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQP---GVIPRA 129
Query: 552 LEQIFQTRQSLLSQG--WKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKH 609
L + Q + ++G W + +S LEIY E + DLL + +G I+
Sbjct: 130 LMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLL----------DPASG-DLVIRE 178
Query: 610 DASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNE 669
D GN + L+ + S + A+ +R+VG T++N++SSRSH V +++
Sbjct: 179 DCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRER 238
Query: 670 -STEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKED 728
+ +Q +G L LIDLAGSE ++G+ G RLKE+ AIN SL L V+ AL + +
Sbjct: 239 LAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPR-- 296
Query: 729 HVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAAR 776
VP+R+SKLT LLQ LGG + +++ NI+PE +++ +L FAAR
Sbjct: 297 -VPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAAR 343
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 135/252 (53%), Gaps = 21/252 (8%)
Query: 440 NIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDESQ 499
+I+V CR RPL +E +++ +G + + GQ + FDRV P+ +Q
Sbjct: 7 SIKVMCRFRPL-------NEAEILRGDKFIPKF-KGEETVVIGQGKPYVFDRVLPPNTTQ 58
Query: 500 EDVFVEIS-QLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQT 558
E V+ + Q+V+ L+GY IFAYGQT SGKT+TM GK P L G+IPR IF
Sbjct: 59 EQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDH 118
Query: 559 RQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDASGNTHVT 618
S+ + ++ ++VS EIY + IRDLL ++ A+ D + +V
Sbjct: 119 IYSM-DENLEFHIKVSYFEIYLDKIRDLLDVSK-----------TNLAVHEDKNRVPYVK 166
Query: 619 DLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQQVQGI 678
T V S +EV ++D +R V T MNE SSRSH +F + I N TE+++ G
Sbjct: 167 GCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGK 226
Query: 679 LNLIDLAGSERL 690
L L+DLAGSE++
Sbjct: 227 LYLVDLAGSEKV 238
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 169/312 (54%), Gaps = 34/312 (10%)
Query: 476 IDIMQNGQKHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYK---VC-IFAYGQTGSGK 531
+D+ + ++H F D+VF D++ ++ V + + +D Y+ VC FAYGQTGSGK
Sbjct: 41 VDMTKYIERHEFIVDKVF--DDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGK 98
Query: 532 TYTMMG-KP-GHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLST 589
TYTM+G +P G D G+ + IF T ++ + + +S EIY + DLL
Sbjct: 99 TYTMLGSQPYGQSDTPGIFQYAAGDIF-TFLNIYDKDNTKGIFISFYEIYCGKLYDLLQK 157
Query: 590 NRDASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQM 649
+ + LEN GK+ + V DL ++ V + +E+ + R +G
Sbjct: 158 RKMVAALEN---GKKEVV---------VKDLKILRVLTKEELILKMIDGVLLRKIGVNSQ 205
Query: 650 NEQSSRSHFVFTLRISGLNESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQA---- 705
N++SSRSH + + + +N++T G + IDLAGSER T + K+TQ
Sbjct: 206 NDESSRSHAILNIDLKDINKNTSL---GKIAFIDLAGSER---GADTVSQNKQTQTDGAN 259
Query: 706 INKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVG 765
IN+SL +L + I A+ + ++H+PFR+S+LT +L+ G SK++M NISP S
Sbjct: 260 INRSLLALKECIRAM---DSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCE 316
Query: 766 ESLCSLRFAARV 777
++L +LR+++RV
Sbjct: 317 QTLNTLRYSSRV 328
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 165/347 (47%), Gaps = 30/347 (8%)
Query: 441 IRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGR----GIDIMQNGQKHSFSFDRVFMPD 496
I V R RPL + + E +IS P+ L +D+ + + +F FD F
Sbjct: 73 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 132
Query: 497 ESQEDVF-VEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGK---PGHPDLKGLIPRSL 552
S E V+ LVQ+ +G K FAYGQTGSGKT+TM G KG+ +
Sbjct: 133 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 192
Query: 553 EQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDAS 612
+F + + E+ V+ EIYN + DLL+ LE D+
Sbjct: 193 RDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLE------------DSR 240
Query: 613 GNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTE 672
V L V +V +++ + R+ G+T N SSRSH F + + T+
Sbjct: 241 QQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL-----RTK 295
Query: 673 QQVQGILNLIDLAGSERLSKSGSTGDRLK-ETQAINKSLSSLSDVIFALAKKEKKEDHVP 731
++ G +L+DLAG+ER + + S + + E INKSL +L + I AL + + H P
Sbjct: 296 GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKA---HTP 352
Query: 732 FRNSKLTYLLQ-PCLGGDSKTLMFVNISPEASSVGESLCSLRFAARV 777
FR SKLT +L+ +G +S+T M ISP SS +L +LR+A RV
Sbjct: 353 FRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRV 399
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/355 (33%), Positives = 170/355 (47%), Gaps = 46/355 (12%)
Query: 441 IRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGR----GIDIMQNGQKHSFSFDRVFMPD 496
I V R RPL + + E +IS P+ L +D+ + + +F FD F
Sbjct: 53 ICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 112
Query: 497 ESQEDVF-VEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDL--------KGL 547
S E V+ LVQ+ +G K FAYGQTGSGKT+TM G DL KG+
Sbjct: 113 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGG-----DLSGKAQNASKGI 167
Query: 548 IPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAI 607
+ +F + + E+ V+ EIYN + DLL+ LE +GKQ
Sbjct: 168 YAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVLE---DGKQ--- 221
Query: 608 KHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVF--TLRIS 665
V L V S +V ++D + R+ G+T N SSRSH F LR
Sbjct: 222 ------QVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK 275
Query: 666 GLNESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQA--INKSLSSLSDVIFALAKK 723
G ++ G +L+DLAG+ER + + S+ DR + INKSL +L + I AL +
Sbjct: 276 G-------RMHGKFSLVDLAGNERGADT-SSADRQTRMEGAEINKSLLALKECIRALGQN 327
Query: 724 EKKEDHVPFRNSKLTYLLQ-PCLGGDSKTLMFVNISPEASSVGESLCSLRFAARV 777
+ H PFR SKLT +L+ +G +S+T M ISP SS +L +LR+A RV
Sbjct: 328 KA---HTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRV 379
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 112/348 (32%), Positives = 166/348 (47%), Gaps = 32/348 (9%)
Query: 441 IRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGR----GIDIMQNGQKHSFSFDRVFMPD 496
I V R RPL + + E +IS P+ L +D+ + + +F FD F
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 60
Query: 497 ESQEDVF-VEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGK---PGHPDLKGLIPRSL 552
S E V+ LVQ+ +G K FAYGQTGSGKT+TM G KG+ +
Sbjct: 61 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 120
Query: 553 EQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDAS 612
+F + + E+ V+ EIYN + DLL+ LE D+
Sbjct: 121 RDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLE------------DSR 168
Query: 613 GNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTE 672
V L V +V +++ + R+ G+T N SSRSH F + + T+
Sbjct: 169 QQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL-----RTK 223
Query: 673 QQVQGILNLIDLAGSERLSKSGSTGDRLKETQA--INKSLSSLSDVIFALAKKEKKEDHV 730
++ G +L+DLAG+ER + + S+ DR + INKSL +L + I AL + + H
Sbjct: 224 GRLHGKFSLVDLAGNERGADT-SSADRQTRMEGAEINKSLLALKECIRALGQNKA---HT 279
Query: 731 PFRNSKLTYLLQ-PCLGGDSKTLMFVNISPEASSVGESLCSLRFAARV 777
PFR SKLT +L+ +G +S+T M ISP SS +L +LR+A RV
Sbjct: 280 PFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRV 327
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 132 bits (333), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 159/330 (48%), Gaps = 39/330 (11%)
Query: 459 EGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDESQEDVF-VEISQLVQSALDGY 517
E ++ +P ++ G+ + + QN F FD F SQ++++ I LV L+G+
Sbjct: 41 EPSVVQFPPWSD--GKSLIVDQN----EFHFDHAFPATISQDEMYQALILPLVDKLLEGF 94
Query: 518 KVCIFAYGQTGSGKTYTM-MGKPGH--PDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQV- 573
+ AYGQTG+GK+Y+M M PG P+ G++PR+L IF+ R + + K +QV
Sbjct: 95 QCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFE-RVTARQENNKDAIQVY 153
Query: 574 -SMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVS 632
S +EIYNE DLL + + C T + + S ++
Sbjct: 154 ASFIEIYNEKPFDLLGSTPHMPMVAARCQ-----------------RCTCLPLHSQADLH 196
Query: 633 YLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQQVQGILNLIDLAGSERLSK 692
++L+ +R V T MN SSRSH + T+ + + +N++DLAGSE + +
Sbjct: 197 HILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSR------MNIVDLAGSEGVRR 250
Query: 693 SGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTL 752
+G G +E IN L S++ V+ ++A +P+R+S LT +LQ L S
Sbjct: 251 TGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV---IPYRDSVLTTVLQASLTAQSYLT 307
Query: 753 MFVNISPEASSVGESLCSLRFAARVNACEI 782
ISP + E+L +LRF A +
Sbjct: 308 FLACISPHQCDLSETLSTLRFGTSAKAAAL 337
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 157/322 (48%), Gaps = 39/322 (12%)
Query: 459 EGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDESQEDVF-VEISQLVQSALDGY 517
E ++ +P ++ G+ + + QN F FD F SQ++++ I LV L+G+
Sbjct: 41 EPSVVQFPPWSD--GKSLIVDQN----EFHFDHAFPATISQDEMYQALILPLVDKLLEGF 94
Query: 518 KVCIFAYGQTGSGKTYTM-MGKPGH--PDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQV- 573
+ AYGQTG+GK+Y+M M PG P+ G++PR+L IF+ R + + K +QV
Sbjct: 95 QCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFE-RVTARQENNKDAIQVY 153
Query: 574 -SMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVS 632
S +EIYNE DLL + + C T + + S ++
Sbjct: 154 ASFIEIYNEKPFDLLGSTPHMPMVAARCQ-----------------RCTCLPLHSQADLH 196
Query: 633 YLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQQVQGILNLIDLAGSERLSK 692
++L+ +R V T MN SSRSH + T+ + + +N++DLAGSE + +
Sbjct: 197 HILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSR------MNIVDLAGSEGVRR 250
Query: 693 SGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTL 752
+G G +E IN L S++ V+ ++A +P+R+S LT +LQ L S
Sbjct: 251 TGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV---IPYRDSVLTTVLQASLTAQSYLT 307
Query: 753 MFVNISPEASSVGESLCSLRFA 774
ISP + E+L +LRF
Sbjct: 308 FLACISPHQCDLSETLSTLRFG 329
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 122 bits (306), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 167/349 (47%), Gaps = 34/349 (9%)
Query: 441 IRVFCRVRPLLPDDSSGSEGKLISYPTTTEAL----GRGIDIMQNGQKHSFSFDRVFMPD 496
I V R RPL ++ + +I+ P+ + + +D+ + + +F FD F
Sbjct: 91 ICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDS 150
Query: 497 ESQEDVF-VEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDL---KGLIPRSL 552
E V+ LV++ + FAYGQTGSGKT+TM G + KG+ +
Sbjct: 151 APNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAA 210
Query: 553 EQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDAS 612
+F + + + ++ + EIY+ + DLL+ LE +GKQ
Sbjct: 211 RDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTKLRVLE---DGKQ-------- 259
Query: 613 GNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVF--TLRISGLNES 670
V L +V ++V L+D R+ G+T N SSRSH VF LR G
Sbjct: 260 -QVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG---- 314
Query: 671 TEQQVQGILNLIDLAGSERLSKSGSTGDRLK-ETQAINKSLSSLSDVIFALAKKEKKEDH 729
++ G +LIDLAG+ER + + S + + E INKSL +L + I AL + + H
Sbjct: 315 ---KLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKP---H 368
Query: 730 VPFRNSKLTYLLQPC-LGGDSKTLMFVNISPEASSVGESLCSLRFAARV 777
PFR SKLT +L+ +G +S+T M ISP +S +L +LR+A RV
Sbjct: 369 TPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRV 417
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 707 NKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGE 766
NKSLS+L +VI ALA E + HVP+R+SK+T +LQ LGG+ +T + + SP + E
Sbjct: 1 NKSLSALGNVISALA--EGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAE 58
Query: 767 SLCSLRFAAR 776
+ +L F R
Sbjct: 59 TKSTLMFGQR 68
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 706 INKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVG 765
INKSLS+L +VI ALA E + HVP+R+SK+T +LQ L G+ +T + + SP +
Sbjct: 4 INKSLSALGNVISALA--EGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEA 61
Query: 766 ESLCSLRFAAR 776
E+ +L F R
Sbjct: 62 ETKSTLMFGQR 72
>pdb|2HQY|A Chain A, Crystal Structure Of Conserved Protein Of Unknown Function
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2HQY|B Chain B, Crystal Structure Of Conserved Protein Of Unknown Function
From Bacteroides Thetaiotaomicron Vpi-5482
Length = 305
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 388 SDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELKGNIRVFCRV 447
SDL+ L+ K +F+ ++ IN RN D EY I +++++ L+L+ +C+V
Sbjct: 128 SDLATLKGK-KFQAKRNHINRFRNTYPDYEYTPITPDRIQE-----CLDLEAE---WCKV 178
Query: 448 RPLLPDDSSGSEGKLISYPT-TTEALGRGIDIMQ-NGQKHSFSF 489
+ +G+E + + Y EALG I+ NG+ +F+F
Sbjct: 179 NNCDQQEGTGNERRALIYALHNFEALGLTGGILHVNGKIVAFTF 222
>pdb|4ETP|B Chain B, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 333
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 29/137 (21%)
Query: 368 SNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLR 427
+++I +L ++AA E+ +++ALE E Q+K N+ Y + E LR
Sbjct: 2 ASEIAALEKEIAALEK-----EIAALEK--EISKQEKFYND--------TYNTVCKELLR 46
Query: 428 -KRLHNTILELKGNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHS 486
+RL N+I+E KG +RV+ V + + E L Y G+ I Q +H
Sbjct: 47 SRRLENSIIEQKGTMRVYAYVM-----EQNLPENLLFDY-------ENGV-ITQGLSEHV 93
Query: 487 FSFDRVFMPDESQEDVF 503
+ F+RV + ED F
Sbjct: 94 YKFNRVIPHLKVSEDCF 110
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 91/182 (50%), Gaps = 16/182 (8%)
Query: 164 KEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMER---SHASLSED 220
K+ E +++I+E + + + + KL +E L +LA E+E N+ + H S+ +
Sbjct: 986 KKMEDDILIMEDQNNKLTKERKLLEERVSDLTT--NLAEEEEKAKNLTKLKNKHESMISE 1043
Query: 221 LG-------KAQEELQSANQRI-ASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKR 272
L K+++EL+ +++ +D+++ + E + + +L K + ++ R
Sbjct: 1044 LEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR 1103
Query: 273 GEKE---KSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQV 329
E E K+ ++ + L LQE L + KA++++A +QK L E+ +++ EL+
Sbjct: 1104 LEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDT 1163
Query: 330 RD 331
D
Sbjct: 1164 LD 1165
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 517 YKVCIFAYGQTGSGKTYTMMGKPGHPDLKG-LIPRSLEQIFQTRQSLLSQGWKYEMQVS 574
Y ++ YG ++ G+ GH DL+ LIP LE + + S +S GW++ M ++
Sbjct: 242 YSGALYTYG-------WSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALT 293
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 517 YKVCIFAYGQTGSGKTYTMMGKPGHPDLKG-LIPRSLEQIFQTRQSLLSQGWKYEMQVS 574
Y ++ YG ++ G+ GH DL+ LIP LE + + S +S GW++ M ++
Sbjct: 230 YSGALYTYG-------WSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALT 281
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 208 LNMERSHASLSEDLGKAQE---ELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDID 264
L MER LS D GK + + A Q ++ + Y + +++L+H + D +
Sbjct: 152 LLMER----LSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 207
Query: 265 AAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRV 324
A ++ +R + NL+ L GQ +S S ++R AL ++ +
Sbjct: 208 AIYDICRRNLDIERPTYTNLNRLIGQIVS----------SITASLRFDGALNVDLTEFQT 257
Query: 325 ELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQI 371
L + ++AE H++L+V+ ++ C +NQ+
Sbjct: 258 NLVPYPRGHFPLATYAPVISAEKAYHEQLSVA--EITNACFEPANQM 302
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 208 LNMERSHASLSEDLGKAQE---ELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDID 264
L MER LS D GK + + A Q ++ + Y + +++L+H + D +
Sbjct: 152 LLMER----LSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 207
Query: 265 AAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRV 324
A ++ +R + NL+ L GQ +S S ++R AL ++ +
Sbjct: 208 AIYDICRRNLDIERPTYTNLNRLIGQIVS----------SITASLRFDGALNVDLTEFQT 257
Query: 325 ELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQI 371
L + ++AE H++L+V+ ++ C +NQ+
Sbjct: 258 NLVPYPRGHFPLATYAPVISAEKAYHEQLSVA--EITNACFEPANQM 302
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 208 LNMERSHASLSEDLGKAQE---ELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDID 264
L MER LS D GK + + A Q ++ + Y + +++L+H + D +
Sbjct: 152 LLMER----LSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 207
Query: 265 AAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRV 324
A ++ +R + NL+ L GQ +S S ++R AL ++ +
Sbjct: 208 AIYDICRRNLDIERPTYTNLNRLIGQIVS----------SITASLRFDGALNVDLTEFQT 257
Query: 325 ELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQI 371
L + ++AE H++L+V+ ++ C +NQ+
Sbjct: 258 NLVPYPRGHFPLATYAPVISAEKAYHEQLSVA--EITNACFEPANQM 302
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 208 LNMERSHASLSEDLGKAQE---ELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDID 264
L MER LS D GK + + A Q ++ + Y + +++L+H + D +
Sbjct: 152 LLMER----LSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 207
Query: 265 AAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRV 324
A ++ +R + NL+ L GQ +S S ++R AL ++ +
Sbjct: 208 AIYDICRRNLDIERPTYTNLNRLIGQIVS----------SITASLRFDGALNVDLTEFQT 257
Query: 325 ELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQI 371
L + ++AE H++L+V+ ++ C +NQ+
Sbjct: 258 NLVPYPRAHFPLATYAPVISAEKAYHEQLSVA--EITNACFEPANQM 302
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,713,396
Number of Sequences: 62578
Number of extensions: 810077
Number of successful extensions: 2797
Number of sequences better than 100.0: 146
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 2380
Number of HSP's gapped (non-prelim): 212
length of query: 801
length of database: 14,973,337
effective HSP length: 107
effective length of query: 694
effective length of database: 8,277,491
effective search space: 5744578754
effective search space used: 5744578754
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)