Query 003711
Match_columns 801
No_of_seqs 667 out of 2883
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:33:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0239 Kinesin (KAR3 subfamil 100.0 4.3E-84 9.4E-89 718.2 44.3 417 369-800 241-660 (670)
2 KOG4280 Kinesin-like protein [ 100.0 1.9E-78 4.2E-83 646.0 23.2 334 438-786 4-342 (574)
3 KOG0240 Kinesin (SMY1 subfamil 100.0 2.2E-76 4.8E-81 609.3 23.1 330 438-785 6-336 (607)
4 KOG0243 Kinesin-like protein [ 100.0 3.9E-75 8.5E-80 646.1 24.9 334 438-789 48-399 (1041)
5 cd01370 KISc_KIP3_like Kinesin 100.0 1.2E-73 2.5E-78 603.9 34.4 326 440-780 1-338 (338)
6 KOG0245 Kinesin-like protein [ 100.0 1.4E-75 3E-80 635.1 19.2 334 439-785 4-353 (1221)
7 cd01373 KISc_KLP2_like Kinesin 100.0 3.8E-73 8.3E-78 599.7 35.2 325 439-780 1-337 (337)
8 PLN03188 kinesin-12 family pro 100.0 4.6E-73 9.9E-78 635.3 33.9 329 438-789 97-443 (1320)
9 cd01368 KISc_KIF23_like Kinesi 100.0 1.1E-71 2.4E-76 589.7 34.8 325 439-778 1-345 (345)
10 cd01365 KISc_KIF1A_KIF1B Kines 100.0 2.1E-70 4.5E-75 585.0 37.2 330 439-785 1-354 (356)
11 KOG0242 Kinesin-like protein [ 100.0 5.4E-71 1.2E-75 616.8 26.5 334 438-789 5-340 (675)
12 cd01367 KISc_KIF2_like Kinesin 100.0 6.1E-70 1.3E-74 572.3 32.6 316 439-778 1-322 (322)
13 cd01369 KISc_KHC_KIF5 Kinesin 100.0 2E-69 4.2E-74 572.1 36.2 323 439-780 2-325 (325)
14 cd01366 KISc_C_terminal Kinesi 100.0 3.2E-69 6.9E-74 572.2 37.8 328 438-783 1-329 (329)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 2.7E-69 5.8E-74 571.0 34.7 324 439-780 1-333 (333)
16 cd01364 KISc_BimC_Eg5 Kinesin 100.0 4.5E-69 9.8E-74 575.2 36.1 332 439-788 2-351 (352)
17 cd01376 KISc_KID_like Kinesin 100.0 5.2E-69 1.1E-73 565.2 35.4 315 440-778 1-319 (319)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 2.9E-68 6.3E-73 561.5 35.5 317 440-780 1-321 (321)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 4.3E-68 9.3E-73 566.5 34.6 326 440-781 2-341 (341)
20 cd01375 KISc_KIF9_like Kinesin 100.0 1E-67 2.2E-72 558.4 34.9 325 440-778 1-334 (334)
21 KOG0241 Kinesin-like protein [ 100.0 2.4E-68 5.3E-73 567.7 20.9 335 438-784 3-355 (1714)
22 smart00129 KISc Kinesin motor, 100.0 3.9E-65 8.4E-70 543.5 35.9 328 440-786 1-334 (335)
23 PF00225 Kinesin: Kinesin moto 100.0 4.5E-65 9.8E-70 544.1 26.2 326 446-780 1-335 (335)
24 cd00106 KISc Kinesin motor dom 100.0 1.3E-63 2.9E-68 531.1 35.7 320 440-778 1-328 (328)
25 KOG0246 Kinesin-like protein [ 100.0 1.7E-63 3.6E-68 511.3 28.3 330 438-785 207-546 (676)
26 KOG0247 Kinesin-like protein [ 100.0 6.3E-64 1.4E-68 530.0 21.9 340 436-785 28-441 (809)
27 KOG0244 Kinesin-like protein [ 100.0 2E-59 4.4E-64 512.2 5.5 321 447-788 1-325 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 7.3E-55 1.6E-59 484.8 24.0 290 484-789 55-345 (568)
29 cd01363 Motor_domain Myosin an 100.0 2.9E-46 6.4E-51 361.4 18.6 176 502-759 8-186 (186)
30 COG1196 Smc Chromosome segrega 99.6 2.4E-11 5.2E-16 149.8 45.8 389 103-495 165-580 (1163)
31 TIGR02169 SMC_prok_A chromosom 99.6 3E-11 6.4E-16 152.6 47.0 44 437-480 523-568 (1164)
32 KOG0996 Structural maintenance 99.6 6.2E-10 1.3E-14 126.1 48.1 58 463-523 1166-1239(1293)
33 COG1196 Smc Chromosome segrega 99.5 1.3E-09 2.8E-14 134.6 53.2 18 506-523 1109-1126(1163)
34 TIGR02169 SMC_prok_A chromosom 99.5 1E-09 2.3E-14 138.6 50.9 29 108-136 168-196 (1164)
35 TIGR02168 SMC_prok_B chromosom 99.5 7.6E-10 1.6E-14 140.2 48.3 17 545-561 1122-1138(1179)
36 TIGR02168 SMC_prok_B chromosom 99.5 1.5E-09 3.3E-14 137.5 50.2 26 399-424 995-1020(1179)
37 KOG0161 Myosin class II heavy 99.5 4.4E-09 9.5E-14 129.0 49.2 125 171-295 902-1026(1930)
38 KOG0161 Myosin class II heavy 99.5 6.2E-09 1.4E-13 127.7 50.2 137 214-350 1001-1137(1930)
39 KOG0971 Microtubule-associated 99.4 8.3E-08 1.8E-12 105.7 51.0 15 490-504 652-666 (1243)
40 KOG0996 Structural maintenance 99.4 6.9E-09 1.5E-13 117.9 43.5 49 432-481 613-663 (1293)
41 PRK02224 chromosome segregatio 99.4 1E-08 2.2E-13 124.8 49.2 11 548-558 739-749 (880)
42 PF07888 CALCOCO1: Calcium bin 99.4 3.4E-08 7.4E-13 106.6 43.0 18 109-126 142-159 (546)
43 KOG0977 Nuclear envelope prote 99.3 2.5E-08 5.5E-13 107.6 40.3 137 89-235 41-185 (546)
44 KOG0964 Structural maintenance 99.3 1.1E-07 2.4E-12 106.0 43.0 154 315-471 395-560 (1200)
45 KOG0971 Microtubule-associated 99.3 1.7E-06 3.7E-11 95.7 51.2 6 574-579 885-890 (1243)
46 TIGR00606 rad50 rad50. This fa 99.2 6.3E-07 1.4E-11 112.5 50.2 40 402-441 1052-1091(1311)
47 KOG0933 Structural maintenance 99.2 1.8E-06 3.9E-11 97.1 47.1 101 214-314 789-889 (1174)
48 PRK03918 chromosome segregatio 99.2 2.2E-06 4.7E-11 104.8 51.9 12 113-124 203-214 (880)
49 KOG4643 Uncharacterized coiled 99.2 2.9E-06 6.3E-11 95.3 46.8 48 274-321 407-454 (1195)
50 KOG0976 Rho/Rac1-interacting s 99.2 2.4E-06 5.3E-11 93.1 43.8 71 315-385 328-402 (1265)
51 PF10174 Cast: RIM-binding pro 99.2 1.4E-06 3.1E-11 99.8 44.8 112 165-276 289-400 (775)
52 KOG0976 Rho/Rac1-interacting s 99.2 4.2E-06 9.1E-11 91.4 45.3 30 751-782 897-926 (1265)
53 KOG0250 DNA repair protein RAD 99.2 8.8E-06 1.9E-10 93.5 50.0 15 628-642 914-928 (1074)
54 KOG0250 DNA repair protein RAD 99.2 7.2E-06 1.6E-10 94.2 49.0 68 357-424 736-803 (1074)
55 PF05701 WEMBL: Weak chloropla 99.1 8.7E-06 1.9E-10 91.5 48.9 17 111-127 63-79 (522)
56 KOG4643 Uncharacterized coiled 99.1 2.7E-06 5.9E-11 95.6 43.0 17 292-308 418-434 (1195)
57 PF10174 Cast: RIM-binding pro 99.1 6.8E-06 1.5E-10 94.3 46.9 23 356-378 515-537 (775)
58 PF00038 Filament: Intermediat 99.1 3.7E-06 7.9E-11 89.2 41.4 25 108-132 16-40 (312)
59 KOG0933 Structural maintenance 99.1 1.4E-05 3.1E-10 90.2 44.9 13 111-123 692-704 (1174)
60 PRK01156 chromosome segregatio 99.0 1.5E-05 3.4E-10 97.1 49.7 12 546-557 837-848 (895)
61 PF05701 WEMBL: Weak chloropla 99.0 4.9E-05 1.1E-09 85.5 49.5 17 212-228 172-188 (522)
62 KOG4674 Uncharacterized conser 99.0 2.4E-05 5.2E-10 95.3 48.5 6 92-97 638-643 (1822)
63 KOG0964 Structural maintenance 99.0 2.1E-05 4.5E-10 88.4 43.3 33 356-388 419-451 (1200)
64 KOG0977 Nuclear envelope prote 99.0 7.8E-06 1.7E-10 88.7 39.1 154 109-265 41-194 (546)
65 PRK04778 septation ring format 99.0 1.1E-05 2.4E-10 92.1 42.6 12 546-557 552-563 (569)
66 PF00038 Filament: Intermediat 99.0 2E-05 4.4E-10 83.5 41.9 81 164-244 55-135 (312)
67 PRK04863 mukB cell division pr 99.0 4.2E-05 9.2E-10 94.7 48.0 33 118-150 301-333 (1486)
68 KOG4674 Uncharacterized conser 99.0 9.5E-05 2.1E-09 90.3 49.4 35 409-443 1104-1138(1822)
69 KOG0994 Extracellular matrix g 98.9 0.0001 2.3E-09 83.9 44.9 12 406-417 1726-1737(1758)
70 PF12128 DUF3584: Protein of u 98.9 0.00028 6E-09 88.1 53.8 16 707-722 1124-1139(1201)
71 KOG0612 Rho-associated, coiled 98.9 6.4E-05 1.4E-09 87.0 43.5 12 428-439 807-818 (1317)
72 PRK04778 septation ring format 98.9 0.00019 4.2E-09 82.0 48.3 39 112-150 114-152 (569)
73 PF12128 DUF3584: Protein of u 98.9 0.00031 6.7E-09 87.6 53.3 12 752-763 1176-1187(1201)
74 KOG0994 Extracellular matrix g 98.9 0.00017 3.7E-09 82.2 45.2 9 405-413 1732-1740(1758)
75 PRK04863 mukB cell division pr 98.9 5.1E-05 1.1E-09 94.1 44.5 15 112-126 232-246 (1486)
76 KOG0995 Centromere-associated 98.9 0.00032 7E-09 75.5 45.5 64 165-228 261-324 (581)
77 KOG0018 Structural maintenance 98.8 5.8E-05 1.3E-09 86.3 39.9 38 88-128 141-178 (1141)
78 PF09730 BicD: Microtubule-ass 98.8 0.00047 1E-08 78.3 47.1 27 108-134 32-58 (717)
79 PF09726 Macoilin: Transmembra 98.8 1.7E-05 3.6E-10 90.9 36.2 28 112-139 420-447 (697)
80 KOG0612 Rho-associated, coiled 98.8 0.00014 3.1E-09 84.2 41.6 19 424-442 792-810 (1317)
81 KOG0018 Structural maintenance 98.8 5.5E-05 1.2E-09 86.4 37.3 21 428-448 495-515 (1141)
82 PF15070 GOLGA2L5: Putative go 98.8 0.00024 5.2E-09 80.3 41.9 9 677-685 542-550 (617)
83 KOG0995 Centromere-associated 98.8 0.00061 1.3E-08 73.4 47.1 6 143-148 271-276 (581)
84 PF15070 GOLGA2L5: Putative go 98.8 0.00096 2.1E-08 75.6 47.2 41 110-150 22-62 (617)
85 PF01576 Myosin_tail_1: Myosin 98.7 2.2E-09 4.7E-14 127.0 0.0 20 423-442 516-535 (859)
86 KOG4593 Mitotic checkpoint pro 98.7 0.0011 2.3E-08 73.1 46.0 77 107-183 95-171 (716)
87 PF09726 Macoilin: Transmembra 98.7 2.2E-05 4.8E-10 90.0 31.9 16 173-188 421-436 (697)
88 KOG1029 Endocytic adaptor prot 98.7 0.00043 9.2E-09 76.1 39.3 23 678-700 957-979 (1118)
89 KOG0946 ER-Golgi vesicle-tethe 98.7 6.7E-05 1.4E-09 83.0 33.1 11 88-98 567-577 (970)
90 PHA02562 46 endonuclease subun 98.7 3.8E-05 8.2E-10 88.9 34.1 13 547-559 510-522 (562)
91 COG1340 Uncharacterized archae 98.7 0.00061 1.3E-08 68.1 38.7 57 165-221 36-92 (294)
92 PHA02562 46 endonuclease subun 98.6 4.5E-05 9.8E-10 88.3 33.0 104 168-274 172-275 (562)
93 PF09730 BicD: Microtubule-ass 98.6 0.0025 5.4E-08 72.6 46.7 23 417-439 439-461 (717)
94 COG4372 Uncharacterized protei 98.6 0.00047 1E-08 69.9 33.6 21 516-539 391-411 (499)
95 PRK11637 AmiB activator; Provi 98.6 0.00013 2.8E-09 80.8 32.7 76 110-189 47-122 (428)
96 KOG0978 E3 ubiquitin ligase in 98.6 0.003 6.6E-08 70.9 44.7 157 284-443 463-619 (698)
97 KOG4673 Transcription factor T 98.6 0.0024 5.2E-08 69.5 42.8 18 109-126 345-362 (961)
98 PRK11637 AmiB activator; Provi 98.5 0.00024 5.1E-09 78.7 33.4 10 655-664 406-415 (428)
99 COG4372 Uncharacterized protei 98.5 0.00066 1.4E-08 68.8 32.4 95 185-279 75-169 (499)
100 KOG4673 Transcription factor T 98.5 0.003 6.5E-08 68.8 48.6 28 395-422 730-757 (961)
101 PF05483 SCP-1: Synaptonemal c 98.5 0.0037 8.1E-08 68.5 50.0 20 484-503 711-730 (786)
102 COG0419 SbcC ATPase involved i 98.5 0.0092 2E-07 72.8 51.5 8 624-631 878-885 (908)
103 PF09728 Taxilin: Myosin-like 98.5 0.0026 5.6E-08 66.2 41.7 96 318-416 203-298 (309)
104 PF05483 SCP-1: Synaptonemal c 98.5 0.0042 9.2E-08 68.1 49.5 9 90-98 141-149 (786)
105 PF14915 CCDC144C: CCDC144C pr 98.5 0.0022 4.7E-08 63.6 44.1 52 136-187 29-80 (305)
106 KOG0980 Actin-binding protein 98.5 0.0041 8.9E-08 70.1 39.1 17 110-126 333-349 (980)
107 PF14662 CCDC155: Coiled-coil 98.4 0.00081 1.8E-08 62.4 28.2 21 217-237 13-33 (193)
108 KOG0999 Microtubule-associated 98.4 0.0022 4.8E-08 68.1 34.9 24 364-387 196-219 (772)
109 KOG0999 Microtubule-associated 98.4 0.0045 9.8E-08 65.8 43.0 20 280-299 199-218 (772)
110 COG5185 HEC1 Protein involved 98.4 0.0044 9.6E-08 64.7 41.5 65 165-229 297-361 (622)
111 KOG0963 Transcription factor/C 98.4 0.005 1.1E-07 67.2 37.0 37 214-250 230-266 (629)
112 TIGR03185 DNA_S_dndD DNA sulfu 98.4 0.009 1.9E-07 70.0 42.2 44 139-186 210-253 (650)
113 PF05667 DUF812: Protein of un 98.4 0.0048 1E-07 69.7 37.8 13 373-385 575-587 (594)
114 PF05667 DUF812: Protein of un 98.3 0.0037 8E-08 70.6 36.6 18 370-387 513-530 (594)
115 COG4942 Membrane-bound metallo 98.3 0.004 8.7E-08 65.8 33.9 34 315-348 215-248 (420)
116 PRK10929 putative mechanosensi 98.3 0.021 4.5E-07 69.0 44.0 13 777-789 1071-1083(1109)
117 KOG0980 Actin-binding protein 98.3 0.013 2.7E-07 66.4 39.9 14 113-126 329-342 (980)
118 COG4942 Membrane-bound metallo 98.3 0.0085 1.8E-07 63.4 35.0 17 110-126 38-54 (420)
119 KOG0978 E3 ubiquitin ligase in 98.3 0.017 3.6E-07 65.2 45.0 86 356-441 525-610 (698)
120 COG5059 KIP1 Kinesin-like prot 98.2 4E-09 8.6E-14 118.9 -14.4 263 425-720 292-565 (568)
121 COG5185 HEC1 Protein involved 98.2 0.012 2.7E-07 61.5 39.3 23 165-187 332-354 (622)
122 PF04849 HAP1_N: HAP1 N-termin 98.2 0.0068 1.5E-07 61.4 30.8 23 165-187 99-121 (306)
123 TIGR03185 DNA_S_dndD DNA sulfu 98.2 0.03 6.6E-07 65.6 44.6 9 603-611 630-638 (650)
124 PF14915 CCDC144C: CCDC144C pr 98.2 0.0089 1.9E-07 59.4 42.5 45 184-228 63-107 (305)
125 COG1579 Zn-ribbon protein, pos 98.2 0.0011 2.3E-08 65.0 24.1 6 492-497 222-227 (239)
126 PRK11281 hypothetical protein; 98.2 0.0074 1.6E-07 73.1 36.1 32 207-238 144-175 (1113)
127 COG4477 EzrA Negative regulato 98.2 0.017 3.7E-07 62.0 40.6 7 58-64 64-70 (570)
128 KOG0963 Transcription factor/C 98.1 0.025 5.3E-07 62.0 46.2 13 87-99 12-24 (629)
129 PRK10929 putative mechanosensi 98.1 0.066 1.4E-06 64.9 44.7 39 749-788 991-1030(1109)
130 PRK11281 hypothetical protein; 98.1 0.073 1.6E-06 64.7 47.3 49 740-788 1033-1085(1113)
131 COG1579 Zn-ribbon protein, pos 98.0 0.0019 4.1E-08 63.3 22.1 55 237-291 14-68 (239)
132 PF04849 HAP1_N: HAP1 N-termin 98.0 0.013 2.8E-07 59.4 28.6 67 370-436 235-301 (306)
133 KOG0962 DNA repair protein RAD 98.0 0.084 1.8E-06 63.5 46.1 11 515-525 1204-1214(1294)
134 PF12718 Tropomyosin_1: Tropom 98.0 0.0029 6.3E-08 57.7 21.7 10 267-276 114-123 (143)
135 PF05557 MAD: Mitotic checkpoi 97.9 1.4E-05 3E-10 94.4 6.3 31 405-435 504-534 (722)
136 PF06008 Laminin_I: Laminin Do 97.9 0.041 8.9E-07 56.6 31.5 14 403-416 226-239 (264)
137 PRK09039 hypothetical protein; 97.9 0.0028 6E-08 67.3 22.5 49 368-416 136-184 (343)
138 PRK09039 hypothetical protein; 97.8 0.0066 1.4E-07 64.4 24.5 12 518-529 262-273 (343)
139 COG4477 EzrA Negative regulato 97.8 0.072 1.6E-06 57.4 43.4 54 292-345 378-431 (570)
140 PF05557 MAD: Mitotic checkpoi 97.8 3.9E-06 8.5E-11 98.9 0.0 18 703-720 615-632 (722)
141 PF15619 Lebercilin: Ciliary p 97.8 0.039 8.4E-07 53.1 26.4 12 407-418 174-185 (194)
142 PF09787 Golgin_A5: Golgin sub 97.8 0.13 2.8E-06 58.2 38.6 21 109-129 115-135 (511)
143 KOG0979 Structural maintenance 97.7 0.14 3.1E-06 59.3 34.1 17 545-561 994-1010(1072)
144 PF13514 AAA_27: AAA domain 97.7 0.28 6.1E-06 61.4 51.9 43 481-525 1049-1091(1111)
145 COG3883 Uncharacterized protei 97.7 0.068 1.5E-06 53.2 29.7 43 139-185 53-95 (265)
146 KOG0979 Structural maintenance 97.7 0.15 3.2E-06 59.1 33.2 10 485-494 528-537 (1072)
147 PRK10246 exonuclease subunit S 97.7 0.31 6.7E-06 60.4 46.0 20 545-564 986-1005(1047)
148 PF08317 Spc7: Spc7 kinetochor 97.7 0.12 2.5E-06 54.9 31.6 15 112-126 70-84 (325)
149 PF09789 DUF2353: Uncharacteri 97.7 0.031 6.7E-07 57.4 24.8 12 284-295 135-146 (319)
150 PF08317 Spc7: Spc7 kinetochor 97.6 0.12 2.6E-06 54.7 31.8 23 108-130 73-95 (325)
151 PF09789 DUF2353: Uncharacteri 97.6 0.045 9.7E-07 56.2 25.1 39 263-301 74-112 (319)
152 PF05911 DUF869: Plant protein 97.6 0.069 1.5E-06 62.0 29.0 8 319-326 682-689 (769)
153 PF07111 HCR: Alpha helical co 97.5 0.26 5.5E-06 55.1 49.1 116 143-258 304-419 (739)
154 PRK10246 exonuclease subunit S 97.5 0.55 1.2E-05 58.3 50.3 30 393-422 825-854 (1047)
155 COG3883 Uncharacterized protei 97.5 0.13 2.9E-06 51.1 29.2 18 170-187 38-55 (265)
156 TIGR02680 conserved hypothetic 97.5 0.29 6.4E-06 62.1 35.7 32 165-196 744-775 (1353)
157 KOG1937 Uncharacterized conser 97.5 0.19 4.2E-06 52.8 37.1 9 90-98 231-239 (521)
158 PF07111 HCR: Alpha helical co 97.5 0.29 6.2E-06 54.8 51.9 31 525-555 677-708 (739)
159 PF13514 AAA_27: AAA domain 97.5 0.66 1.4E-05 58.2 44.7 21 499-519 978-998 (1111)
160 PF09755 DUF2046: Uncharacteri 97.4 0.18 3.9E-06 51.2 36.1 34 112-145 29-62 (310)
161 KOG1850 Myosin-like coiled-coi 97.4 0.19 4.1E-06 50.3 44.1 105 336-443 227-331 (391)
162 KOG0962 DNA repair protein RAD 97.4 0.64 1.4E-05 56.3 49.0 15 484-498 1162-1176(1294)
163 COG4717 Uncharacterized conser 97.3 0.49 1.1E-05 54.2 37.9 45 481-527 924-968 (984)
164 PF09755 DUF2046: Uncharacteri 97.3 0.24 5.2E-06 50.3 38.5 20 113-132 23-42 (310)
165 KOG1853 LIS1-interacting prote 97.3 0.17 3.7E-06 48.7 24.0 17 108-124 25-41 (333)
166 PF05911 DUF869: Plant protein 97.2 0.68 1.5E-05 54.1 38.1 140 138-284 24-164 (769)
167 PF09787 Golgin_A5: Golgin sub 97.2 0.62 1.3E-05 52.8 39.4 15 108-122 121-135 (511)
168 smart00787 Spc7 Spc7 kinetocho 97.2 0.37 8.1E-06 50.2 31.6 15 112-126 65-79 (312)
169 PF10481 CENP-F_N: Cenp-F N-te 97.2 0.059 1.3E-06 52.6 19.0 32 213-244 19-50 (307)
170 KOG4593 Mitotic checkpoint pro 97.2 0.62 1.3E-05 52.2 51.5 8 627-634 697-704 (716)
171 KOG1937 Uncharacterized conser 97.1 0.48 1E-05 50.0 37.7 17 400-416 498-514 (521)
172 KOG0249 LAR-interacting protei 97.1 0.54 1.2E-05 52.4 27.5 10 737-746 850-859 (916)
173 smart00787 Spc7 Spc7 kinetocho 97.1 0.48 1.1E-05 49.4 31.1 29 165-193 65-93 (312)
174 TIGR00634 recN DNA repair prot 97.1 0.32 7E-06 56.0 27.7 18 545-562 473-490 (563)
175 TIGR01843 type_I_hlyD type I s 97.1 0.21 4.6E-06 55.5 25.6 24 398-421 247-270 (423)
176 PF13870 DUF4201: Domain of un 97.0 0.35 7.5E-06 46.3 23.0 6 224-229 18-23 (177)
177 KOG1853 LIS1-interacting prote 97.0 0.37 8E-06 46.5 23.3 148 143-300 32-182 (333)
178 TIGR01005 eps_transp_fam exopo 97.0 0.14 3.1E-06 61.4 24.5 26 510-535 537-564 (754)
179 TIGR03007 pepcterm_ChnLen poly 96.9 0.29 6.3E-06 55.7 25.3 25 392-416 357-381 (498)
180 KOG0249 LAR-interacting protei 96.9 0.75 1.6E-05 51.4 26.3 6 552-557 526-531 (916)
181 TIGR01843 type_I_hlyD type I s 96.9 0.38 8.2E-06 53.5 25.7 12 512-523 323-334 (423)
182 TIGR03007 pepcterm_ChnLen poly 96.8 0.3 6.5E-06 55.6 24.7 66 356-425 318-383 (498)
183 KOG2129 Uncharacterized conser 96.8 0.84 1.8E-05 47.5 27.1 11 142-152 47-57 (552)
184 TIGR01005 eps_transp_fam exopo 96.7 0.28 6.1E-06 58.9 24.5 21 757-777 686-706 (754)
185 TIGR02680 conserved hypothetic 96.7 3.3 7.2E-05 52.9 46.4 11 710-720 1191-1201(1353)
186 PF13870 DUF4201: Domain of un 96.7 0.64 1.4E-05 44.5 24.7 37 165-201 44-80 (177)
187 KOG1850 Myosin-like coiled-coi 96.6 0.98 2.1E-05 45.4 40.9 16 321-336 247-262 (391)
188 PLN02939 transferase, transfer 96.5 2.8 6.1E-05 50.1 33.1 27 269-295 258-284 (977)
189 PF15254 CCDC14: Coiled-coil d 96.3 2.8 6.1E-05 47.7 27.9 44 678-721 808-851 (861)
190 PRK10869 recombination and rep 96.3 3.1 6.7E-05 47.7 29.7 18 545-562 463-480 (553)
191 PRK10869 recombination and rep 96.2 3.1 6.8E-05 47.6 31.4 31 484-516 453-483 (553)
192 PF06785 UPF0242: Uncharacteri 96.2 1.3 2.8E-05 44.9 20.9 18 403-420 200-217 (401)
193 KOG1899 LAR transmembrane tyro 96.2 1 2.2E-05 49.5 21.6 17 546-562 486-502 (861)
194 KOG0243 Kinesin-like protein [ 96.2 4.1 9E-05 48.5 42.8 14 114-127 408-421 (1041)
195 PF04111 APG6: Autophagy prote 96.1 0.14 3E-06 53.7 14.7 11 529-539 215-225 (314)
196 KOG2991 Splicing regulator [RN 96.0 1.7 3.7E-05 42.3 24.2 11 270-280 266-276 (330)
197 KOG1899 LAR transmembrane tyro 96.0 1.9 4.1E-05 47.5 22.3 12 492-503 399-410 (861)
198 PF04111 APG6: Autophagy prote 96.0 0.17 3.8E-06 53.0 14.7 8 487-494 227-234 (314)
199 PLN02939 transferase, transfer 95.9 5.5 0.00012 47.8 30.8 15 367-381 381-395 (977)
200 KOG2129 Uncharacterized conser 95.9 2.6 5.6E-05 44.0 30.0 15 112-126 45-59 (552)
201 TIGR01000 bacteriocin_acc bact 95.9 3.2 7E-05 46.5 25.6 17 509-525 368-384 (457)
202 KOG0982 Centrosomal protein Nu 95.9 2.8 6.1E-05 44.1 34.8 25 270-294 362-386 (502)
203 KOG2991 Splicing regulator [RN 95.9 1.8 4E-05 42.0 29.9 53 292-344 253-305 (330)
204 PF15290 Syntaphilin: Golgi-lo 95.8 1.9 4.2E-05 42.7 19.8 45 112-156 63-107 (305)
205 KOG0804 Cytoplasmic Zn-finger 95.8 0.77 1.7E-05 48.6 18.1 11 370-380 436-446 (493)
206 TIGR00618 sbcc exonuclease Sbc 95.7 8.3 0.00018 48.2 46.1 7 749-755 1010-1016(1042)
207 KOG0982 Centrosomal protein Nu 95.7 3.3 7.2E-05 43.6 34.4 14 172-185 252-265 (502)
208 PF13166 AAA_13: AAA domain 95.7 5.7 0.00012 47.5 28.2 9 378-386 461-469 (712)
209 KOG4438 Centromere-associated 95.7 3.5 7.6E-05 43.6 41.9 6 168-173 178-183 (446)
210 PF06818 Fez1: Fez1; InterPro 95.7 2.1 4.5E-05 40.9 24.1 15 165-179 33-47 (202)
211 KOG0804 Cytoplasmic Zn-finger 95.7 0.95 2.1E-05 47.9 18.0 13 405-417 436-448 (493)
212 TIGR03017 EpsF chain length de 95.6 3.2 7E-05 46.4 24.2 19 398-416 350-368 (444)
213 PF15254 CCDC14: Coiled-coil d 95.6 5.6 0.00012 45.4 28.2 23 215-237 390-412 (861)
214 COG0556 UvrB Helicase subunit 95.4 0.031 6.8E-07 60.3 6.6 88 486-581 4-98 (663)
215 TIGR01000 bacteriocin_acc bact 95.3 6.3 0.00014 44.2 27.3 29 359-387 288-316 (457)
216 PF06785 UPF0242: Uncharacteri 95.3 3.9 8.5E-05 41.6 21.2 30 402-431 192-221 (401)
217 PF10498 IFT57: Intra-flagella 95.1 1.6 3.5E-05 46.5 18.1 12 255-266 336-347 (359)
218 PF12777 MT: Microtubule-bindi 95.0 5.1 0.00011 42.9 22.1 84 355-438 221-304 (344)
219 PF10146 zf-C4H2: Zinc finger- 94.9 1.8 3.8E-05 43.0 16.6 21 319-339 83-103 (230)
220 PF10146 zf-C4H2: Zinc finger- 94.9 1.6 3.6E-05 43.2 16.4 6 525-530 176-181 (230)
221 PF13851 GAS: Growth-arrest sp 94.8 4.2 9.1E-05 39.6 30.1 8 218-225 33-40 (201)
222 PF00308 Bac_DnaA: Bacterial d 94.7 0.017 3.7E-07 57.5 2.0 49 486-536 4-52 (219)
223 PF13949 ALIX_LYPXL_bnd: ALIX 94.6 6.9 0.00015 41.0 26.2 35 411-445 255-289 (296)
224 PF04582 Reo_sigmaC: Reovirus 94.3 0.084 1.8E-06 54.1 6.0 28 356-383 127-154 (326)
225 PF04912 Dynamitin: Dynamitin 94.3 10 0.00022 41.4 25.8 21 108-128 92-112 (388)
226 KOG4302 Microtubule-associated 94.2 13 0.00028 42.6 30.7 21 432-452 312-332 (660)
227 PF12777 MT: Microtubule-bindi 94.2 6.7 0.00015 42.0 20.6 22 111-132 9-30 (344)
228 KOG4302 Microtubule-associated 94.2 13 0.00029 42.6 32.1 25 136-160 59-83 (660)
229 TIGR00618 sbcc exonuclease Sbc 94.1 22 0.00047 44.6 50.1 9 739-747 982-990 (1042)
230 KOG2196 Nuclear porin [Nuclear 94.0 6.6 0.00014 38.3 24.8 76 108-187 83-158 (254)
231 KOG0239 Kinesin (KAR3 subfamil 94.0 8.3 0.00018 44.9 21.8 13 479-491 400-412 (670)
232 COG3206 GumC Uncharacterized p 94.0 13 0.00029 41.7 26.1 15 402-416 385-399 (458)
233 PF04912 Dynamitin: Dynamitin 93.9 12 0.00025 41.0 26.0 25 134-158 90-114 (388)
234 COG4026 Uncharacterized protei 93.9 2.4 5.2E-05 40.4 14.1 30 270-299 144-173 (290)
235 PRK03992 proteasome-activating 93.9 0.32 6.9E-06 53.1 9.9 18 518-535 165-182 (389)
236 PRK06620 hypothetical protein; 93.8 0.032 6.9E-07 55.2 2.0 50 484-536 10-62 (214)
237 PF10267 Tmemb_cc2: Predicted 93.8 9.6 0.00021 41.0 20.4 43 142-184 248-290 (395)
238 PF14073 Cep57_CLD: Centrosome 93.7 6 0.00013 37.0 22.9 25 226-250 64-88 (178)
239 COG4717 Uncharacterized conser 93.7 18 0.00038 42.2 37.0 35 400-434 814-848 (984)
240 TIGR01242 26Sp45 26S proteasom 93.7 0.31 6.6E-06 52.9 9.4 17 519-535 157-173 (364)
241 COG2805 PilT Tfp pilus assembl 93.7 0.036 7.7E-07 55.8 1.9 29 507-535 114-142 (353)
242 PF04582 Reo_sigmaC: Reovirus 93.6 0.15 3.2E-06 52.4 6.2 120 233-352 35-154 (326)
243 PRK06835 DNA replication prote 93.6 0.8 1.7E-05 48.5 12.0 34 502-536 168-201 (329)
244 PF05276 SH3BP5: SH3 domain-bi 93.6 8.5 0.00018 38.4 31.4 7 118-124 22-28 (239)
245 COG2433 Uncharacterized conser 93.4 5 0.00011 44.6 17.6 18 508-525 580-597 (652)
246 PF15397 DUF4618: Domain of un 93.4 9.5 0.00021 38.3 32.3 27 397-423 193-219 (258)
247 PF11932 DUF3450: Protein of u 93.3 5.8 0.00013 40.4 17.4 10 436-445 163-172 (251)
248 PRK08084 DNA replication initi 93.2 0.054 1.2E-06 54.6 2.5 48 484-536 16-63 (235)
249 PRK06893 DNA replication initi 93.1 0.063 1.4E-06 53.9 2.7 48 484-536 10-57 (229)
250 PRK10884 SH3 domain-containing 93.1 1.9 4.2E-05 41.9 12.7 19 108-126 91-109 (206)
251 PF10234 Cluap1: Clusterin-ass 93.1 11 0.00024 38.1 19.8 22 253-274 196-217 (267)
252 KOG4677 Golgi integral membran 93.0 14 0.00031 39.3 32.2 18 250-267 326-343 (554)
253 PF11932 DUF3450: Protein of u 93.0 11 0.00024 38.3 19.0 6 436-441 170-175 (251)
254 PTZ00454 26S protease regulato 93.0 0.29 6.2E-06 53.3 7.7 18 518-535 179-196 (398)
255 smart00053 DYNc Dynamin, GTPas 92.9 0.3 6.5E-06 49.0 7.2 53 625-690 86-138 (240)
256 PF10212 TTKRSYEDQ: Predicted 92.9 18 0.00038 40.0 22.5 55 360-417 460-514 (518)
257 PF09738 DUF2051: Double stran 92.8 13 0.00029 38.4 22.0 25 356-380 220-244 (302)
258 COG0497 RecN ATPase involved i 92.8 20 0.00043 40.4 29.4 18 545-562 464-481 (557)
259 PRK12377 putative replication 92.8 0.074 1.6E-06 53.7 2.7 48 488-536 72-119 (248)
260 KOG1103 Predicted coiled-coil 92.8 13 0.00028 38.0 23.6 7 341-347 283-289 (561)
261 COG2804 PulE Type II secretory 92.7 0.065 1.4E-06 58.3 2.3 32 506-537 246-277 (500)
262 PF15290 Syntaphilin: Golgi-lo 92.1 11 0.00023 37.7 16.2 9 497-505 228-236 (305)
263 PLN03229 acetyl-coenzyme A car 92.0 28 0.00061 40.3 27.8 14 137-150 435-448 (762)
264 PRK07952 DNA replication prote 91.9 0.1 2.3E-06 52.5 2.5 49 487-536 69-117 (244)
265 KOG0288 WD40 repeat protein Ti 91.9 12 0.00027 39.5 17.1 22 511-532 212-233 (459)
266 PRK14086 dnaA chromosomal repl 91.9 0.08 1.7E-06 59.9 1.8 51 484-536 282-332 (617)
267 COG3096 MukB Uncharacterized p 91.7 28 0.00062 39.6 38.5 8 143-150 353-360 (1480)
268 PLN03188 kinesin-12 family pro 91.6 42 0.00091 41.3 43.8 9 512-520 1310-1318(1320)
269 PRK05642 DNA replication initi 91.4 0.12 2.6E-06 52.0 2.4 50 485-536 14-63 (234)
270 KOG1103 Predicted coiled-coil 91.4 19 0.00041 36.9 28.8 34 81-123 6-39 (561)
271 PRK08903 DnaA regulatory inact 91.4 0.14 2.9E-06 51.5 2.7 48 484-535 12-59 (227)
272 PRK09841 cryptic autophosphory 91.3 8.5 0.00018 45.9 18.0 20 517-536 531-550 (726)
273 TIGR03420 DnaA_homol_Hda DnaA 91.1 0.15 3.3E-06 51.1 2.8 47 484-535 9-55 (226)
274 PRK08116 hypothetical protein; 91.1 0.13 2.8E-06 52.9 2.2 50 486-536 81-132 (268)
275 PF10212 TTKRSYEDQ: Predicted 90.9 29 0.00064 38.3 24.6 62 287-351 439-500 (518)
276 KOG0727 26S proteasome regulat 90.9 2.1 4.5E-05 42.1 9.9 87 475-561 140-246 (408)
277 PRK10865 protein disaggregatio 90.9 21 0.00047 43.3 20.9 44 488-535 566-615 (857)
278 PRK09087 hypothetical protein; 90.6 0.14 3.1E-06 51.1 2.0 48 484-536 15-62 (226)
279 COG3206 GumC Uncharacterized p 90.6 33 0.00072 38.4 26.2 7 373-379 353-359 (458)
280 PF07058 Myosin_HC-like: Myosi 90.6 21 0.00046 36.1 17.7 20 398-417 116-135 (351)
281 PRK09841 cryptic autophosphory 90.5 10 0.00023 45.2 17.8 21 757-777 671-691 (726)
282 PRK14088 dnaA chromosomal repl 90.5 0.15 3.2E-06 56.6 2.2 50 483-536 98-148 (440)
283 KOG2751 Beclin-like protein [S 90.4 23 0.0005 37.9 17.7 18 247-264 246-263 (447)
284 KOG2751 Beclin-like protein [S 90.3 14 0.0003 39.5 16.0 7 549-555 423-429 (447)
285 PF09738 DUF2051: Double stran 90.3 25 0.00054 36.5 21.8 20 394-413 280-299 (302)
286 COG0497 RecN ATPase involved i 90.3 36 0.00078 38.4 37.0 39 486-526 456-494 (557)
287 KOG4438 Centromere-associated 90.1 29 0.00063 37.0 41.1 18 171-188 174-191 (446)
288 KOG2196 Nuclear porin [Nuclear 90.1 20 0.00043 35.1 21.2 23 165-187 73-95 (254)
289 PRK11519 tyrosine kinase; Prov 90.0 16 0.00035 43.6 18.7 20 516-535 525-544 (719)
290 PF05673 DUF815: Protein of un 89.9 0.35 7.7E-06 48.0 4.0 113 509-661 42-156 (249)
291 cd09234 V_HD-PTP_like Protein- 89.9 31 0.00066 36.9 24.8 47 401-447 290-336 (337)
292 PF15450 DUF4631: Domain of un 89.8 35 0.00077 37.5 45.9 8 114-121 171-178 (531)
293 COG5283 Phage-related tail pro 89.8 57 0.0012 39.9 34.0 18 143-160 27-44 (1213)
294 PRK08939 primosomal protein Dn 89.7 0.19 4.1E-06 52.7 2.1 50 487-536 124-174 (306)
295 KOG1924 RhoA GTPase effector D 89.7 0.56 1.2E-05 52.9 5.6 65 3-74 539-603 (1102)
296 KOG0728 26S proteasome regulat 89.6 3.5 7.5E-05 40.6 10.3 19 517-535 180-198 (404)
297 COG5008 PilU Tfp pilus assembl 89.1 0.24 5.2E-06 48.9 2.1 34 502-535 109-144 (375)
298 PRK08181 transposase; Validate 88.8 0.21 4.6E-06 51.1 1.7 21 515-537 105-125 (269)
299 PRK11519 tyrosine kinase; Prov 88.6 22 0.00048 42.4 18.6 22 755-776 664-685 (719)
300 PRK14087 dnaA chromosomal repl 88.5 0.26 5.7E-06 54.7 2.3 49 486-536 111-159 (450)
301 PRK00149 dnaA chromosomal repl 88.5 0.26 5.7E-06 55.1 2.3 53 482-536 114-166 (450)
302 COG1474 CDC6 Cdc6-related prot 88.1 0.87 1.9E-05 49.0 5.8 30 506-535 29-59 (366)
303 PF03962 Mnd1: Mnd1 family; I 88.1 21 0.00046 34.3 14.6 20 360-379 140-159 (188)
304 TIGR00362 DnaA chromosomal rep 87.9 0.33 7.1E-06 53.5 2.5 51 484-536 104-154 (405)
305 PF13245 AAA_19: Part of AAA d 87.7 0.25 5.5E-06 39.7 1.1 26 510-536 3-28 (76)
306 PF03915 AIP3: Actin interacti 87.7 47 0.001 36.3 19.6 8 112-119 94-101 (424)
307 PRK08727 hypothetical protein; 87.6 0.33 7.2E-06 48.9 2.1 18 519-536 42-59 (233)
308 PF13863 DUF4200: Domain of un 87.4 20 0.00044 31.8 17.1 19 209-227 78-96 (126)
309 KOG0972 Huntingtin interacting 87.2 35 0.00076 34.3 16.3 135 122-256 218-365 (384)
310 PRK12704 phosphodiesterase; Pr 87.1 60 0.0013 36.9 23.7 20 490-510 276-295 (520)
311 KOG4687 Uncharacterized coiled 86.8 35 0.00076 33.9 26.3 242 184-428 9-256 (389)
312 PF01695 IstB_IS21: IstB-like 86.7 0.35 7.6E-06 46.3 1.7 31 506-536 35-65 (178)
313 PRK10436 hypothetical protein; 86.6 0.38 8.2E-06 53.4 2.0 31 506-536 206-236 (462)
314 cd08915 V_Alix_like Protein-in 86.5 50 0.0011 35.4 26.7 240 207-448 72-342 (342)
315 COG0593 DnaA ATPase involved i 86.4 0.37 8.1E-06 51.8 1.8 51 484-536 81-131 (408)
316 KOG4572 Predicted DNA-binding 86.3 71 0.0015 36.9 28.8 288 151-441 861-1169(1424)
317 PF03148 Tektin: Tektin family 86.0 57 0.0012 35.5 44.7 16 177-192 64-79 (384)
318 PRK10361 DNA recombination pro 86.0 62 0.0013 35.9 28.0 11 459-469 241-251 (475)
319 PF15358 TSKS: Testis-specific 85.8 51 0.0011 34.8 21.2 9 505-513 437-445 (558)
320 smart00283 MA Methyl-accepting 85.5 44 0.00095 33.8 35.9 234 202-438 1-262 (262)
321 COG1484 DnaC DNA replication p 85.5 0.51 1.1E-05 48.1 2.2 39 496-536 85-123 (254)
322 TIGR02538 type_IV_pilB type IV 85.2 0.46 1E-05 54.5 1.9 31 506-536 304-334 (564)
323 KOG2685 Cystoskeletal protein 85.2 58 0.0012 34.9 34.3 21 165-185 93-113 (421)
324 PRK06921 hypothetical protein; 85.1 0.62 1.3E-05 47.8 2.7 35 502-536 98-135 (266)
325 COG5283 Phage-related tail pro 85.1 1E+02 0.0022 37.8 36.3 9 177-185 71-79 (1213)
326 cd00009 AAA The AAA+ (ATPases 85.1 0.62 1.3E-05 42.5 2.5 27 509-535 10-36 (151)
327 TIGR02533 type_II_gspE general 85.0 0.56 1.2E-05 52.6 2.4 31 506-536 230-260 (486)
328 PF15294 Leu_zip: Leucine zipp 85.0 47 0.001 33.8 28.2 15 399-413 262-276 (278)
329 PF04851 ResIII: Type III rest 84.8 0.56 1.2E-05 45.0 2.1 30 508-537 14-44 (184)
330 PRK12704 phosphodiesterase; Pr 84.7 78 0.0017 36.0 24.6 35 757-791 474-510 (520)
331 PRK12422 chromosomal replicati 84.5 0.66 1.4E-05 51.4 2.7 53 483-536 104-159 (445)
332 PRK10361 DNA recombination pro 84.5 72 0.0016 35.4 27.2 18 364-381 142-159 (475)
333 TIGR03319 YmdA_YtgF conserved 84.5 79 0.0017 35.9 23.9 36 757-792 468-505 (514)
334 PF11570 E2R135: Coiled-coil r 84.4 27 0.00059 30.5 14.1 26 358-383 80-105 (136)
335 KOG4460 Nuclear pore complex, 84.3 72 0.0016 35.3 21.6 9 7-15 208-216 (741)
336 PF13191 AAA_16: AAA ATPase do 83.8 0.36 7.8E-06 46.5 0.2 32 504-535 10-41 (185)
337 TIGR02928 orc1/cdc6 family rep 83.7 0.85 1.8E-05 49.5 3.2 33 503-535 24-57 (365)
338 PF06309 Torsin: Torsin; Inte 83.5 0.56 1.2E-05 41.4 1.3 16 520-535 55-70 (127)
339 cd01131 PilT Pilus retraction 83.4 0.42 9.2E-06 46.7 0.6 19 518-536 1-19 (198)
340 TIGR03015 pepcterm_ATPase puta 83.3 0.64 1.4E-05 48.0 1.9 44 492-535 12-60 (269)
341 PF13401 AAA_22: AAA domain; P 83.2 0.38 8.2E-06 43.3 0.1 18 518-535 4-21 (131)
342 TIGR02524 dot_icm_DotB Dot/Icm 83.2 0.61 1.3E-05 50.0 1.7 24 513-536 129-152 (358)
343 PF11180 DUF2968: Protein of u 83.2 43 0.00093 31.8 15.3 7 90-96 29-35 (192)
344 PF05278 PEARLI-4: Arabidopsis 83.1 55 0.0012 33.1 18.7 10 178-187 167-176 (269)
345 PF15035 Rootletin: Ciliary ro 82.9 45 0.00098 31.9 18.5 22 389-410 140-161 (182)
346 cd01129 PulE-GspE PulE/GspE Th 82.6 0.85 1.8E-05 46.8 2.4 31 506-536 68-98 (264)
347 PRK00411 cdc6 cell division co 82.5 1.1 2.3E-05 49.3 3.4 34 502-535 38-72 (394)
348 TIGR02525 plasmid_TraJ plasmid 82.4 0.67 1.5E-05 49.8 1.6 26 509-535 141-166 (372)
349 PRK06526 transposase; Provisio 82.4 0.6 1.3E-05 47.5 1.2 17 520-536 100-116 (254)
350 KOG3859 Septins (P-loop GTPase 82.3 0.62 1.4E-05 46.2 1.2 27 509-535 32-59 (406)
351 TIGR02971 heterocyst_DevB ABC 82.1 73 0.0016 33.8 19.1 13 511-523 252-264 (327)
352 PRK13894 conjugal transfer ATP 82.1 0.87 1.9E-05 48.0 2.3 29 506-535 137-165 (319)
353 TIGR01420 pilT_fam pilus retra 82.1 0.7 1.5E-05 49.5 1.6 28 509-536 113-140 (343)
354 PF01637 Arch_ATPase: Archaeal 82.0 0.61 1.3E-05 46.7 1.1 30 506-535 8-37 (234)
355 smart00763 AAA_PrkA PrkA AAA d 81.7 3.3 7.1E-05 44.0 6.4 64 491-558 52-143 (361)
356 TIGR03794 NHPM_micro_HlyD NHPM 81.7 90 0.002 34.5 21.4 22 399-420 229-250 (421)
357 PF00270 DEAD: DEAD/DEAH box h 81.7 0.79 1.7E-05 43.3 1.7 28 508-537 6-33 (169)
358 PF03999 MAP65_ASE1: Microtubu 81.6 1.2 2.6E-05 51.9 3.4 12 426-437 385-396 (619)
359 KOG0992 Uncharacterized conser 81.1 91 0.002 34.1 43.4 15 698-712 561-575 (613)
360 KOG3850 Predicted membrane pro 81.0 78 0.0017 33.3 22.8 41 145-185 299-339 (455)
361 TIGR03319 YmdA_YtgF conserved 81.0 1.1E+02 0.0023 34.9 24.9 11 710-720 439-449 (514)
362 TIGR01010 BexC_CtrB_KpsE polys 80.8 88 0.0019 33.8 18.4 154 224-384 149-307 (362)
363 PF08172 CASP_C: CASP C termin 80.6 38 0.00083 34.2 13.2 11 370-380 122-132 (248)
364 KOG0926 DEAH-box RNA helicase 80.6 1.1 2.4E-05 51.1 2.5 31 517-548 270-308 (1172)
365 PF07058 Myosin_HC-like: Myosi 80.5 71 0.0015 32.5 17.2 17 135-151 32-48 (351)
366 PTZ00112 origin recognition co 80.4 0.73 1.6E-05 53.9 1.1 32 504-535 765-798 (1164)
367 PF00448 SRP54: SRP54-type pro 80.3 0.62 1.3E-05 45.4 0.4 16 520-535 3-18 (196)
368 COG3096 MukB Uncharacterized p 80.2 1.2E+02 0.0026 34.9 44.6 6 429-434 655-660 (1480)
369 TIGR03794 NHPM_micro_HlyD NHPM 79.5 1.1E+02 0.0023 34.0 21.4 11 512-522 307-317 (421)
370 cd00046 DEXDc DEAD-like helica 79.4 0.67 1.5E-05 41.8 0.4 17 521-537 3-19 (144)
371 smart00382 AAA ATPases associa 79.4 0.71 1.5E-05 41.7 0.5 16 520-535 4-19 (148)
372 TIGR02231 conserved hypothetic 79.4 23 0.00051 40.5 12.9 90 240-329 71-171 (525)
373 KOG0993 Rab5 GTPase effector R 79.3 91 0.002 33.1 39.2 325 107-431 104-496 (542)
374 PRK12402 replication factor C 79.3 1 2.2E-05 48.3 1.8 41 488-535 13-53 (337)
375 TIGR02782 TrbB_P P-type conjug 79.2 1.2 2.6E-05 46.6 2.2 31 504-535 119-149 (299)
376 TIGR03752 conj_TIGR03752 integ 79.1 29 0.00062 38.0 12.3 79 228-306 61-140 (472)
377 TIGR03752 conj_TIGR03752 integ 79.1 29 0.00062 38.0 12.3 81 221-301 61-142 (472)
378 KOG0972 Huntingtin interacting 79.1 76 0.0016 32.0 18.2 156 94-249 204-365 (384)
379 PF02994 Transposase_22: L1 tr 79.1 6.6 0.00014 42.4 7.8 126 257-385 58-188 (370)
380 COG1730 GIM5 Predicted prefold 79.0 52 0.0011 30.1 15.7 100 211-310 5-143 (145)
381 cd01130 VirB11-like_ATPase Typ 79.0 1.3 2.9E-05 42.8 2.3 31 504-535 12-42 (186)
382 cd00632 Prefoldin_beta Prefold 78.9 41 0.00088 28.9 13.3 81 250-330 2-104 (105)
383 PRK10476 multidrug resistance 78.9 97 0.0021 33.2 18.3 123 250-372 82-207 (346)
384 PF13604 AAA_30: AAA domain; P 78.9 1.1 2.3E-05 43.8 1.6 29 507-535 7-35 (196)
385 TIGR02231 conserved hypothetic 78.7 25 0.00054 40.2 12.9 90 212-301 71-171 (525)
386 KOG4807 F-actin binding protei 78.5 92 0.002 32.7 31.7 258 127-387 294-583 (593)
387 KOG0652 26S proteasome regulat 78.4 17 0.00037 36.2 9.4 149 379-532 16-219 (424)
388 PF03915 AIP3: Actin interacti 78.4 1.1E+02 0.0024 33.5 19.6 162 145-310 151-320 (424)
389 PF03215 Rad17: Rad17 cell cyc 78.4 1.4 2.9E-05 49.8 2.4 32 504-535 29-62 (519)
390 PF01920 Prefoldin_2: Prefoldi 78.1 42 0.00092 28.6 12.7 82 313-394 1-101 (106)
391 TIGR02449 conserved hypothetic 78.1 29 0.00063 26.7 8.9 63 227-289 1-63 (65)
392 PF13207 AAA_17: AAA domain; P 78.0 0.88 1.9E-05 40.3 0.7 15 520-534 1-15 (121)
393 PF08581 Tup_N: Tup N-terminal 78.0 35 0.00075 27.5 11.3 74 92-174 2-75 (79)
394 COG1125 OpuBA ABC-type proline 77.9 0.54 1.2E-05 46.5 -0.8 23 521-553 30-52 (309)
395 KOG0992 Uncharacterized conser 77.9 1.1E+02 0.0025 33.4 43.1 351 107-462 71-433 (613)
396 PRK13833 conjugal transfer pro 77.8 1.4 3.1E-05 46.3 2.3 31 504-535 131-161 (323)
397 PF02994 Transposase_22: L1 tr 77.8 7.7 0.00017 41.9 7.8 125 223-347 59-188 (370)
398 PRK13900 type IV secretion sys 77.7 1.3 2.8E-05 47.0 1.9 31 504-535 147-177 (332)
399 PF00004 AAA: ATPase family as 77.6 0.8 1.7E-05 41.1 0.3 15 521-535 1-15 (132)
400 PRK13851 type IV secretion sys 77.2 1.4 3.1E-05 46.8 2.1 31 504-535 149-179 (344)
401 PF00437 T2SE: Type II/IV secr 77.2 0.95 2.1E-05 46.8 0.7 30 506-535 112-144 (270)
402 COG4962 CpaF Flp pilus assembl 77.1 1.5 3.3E-05 45.6 2.1 31 504-535 160-190 (355)
403 PF08172 CASP_C: CASP C termin 77.1 56 0.0012 33.0 13.1 90 291-383 1-135 (248)
404 PF12004 DUF3498: Domain of un 76.9 0.78 1.7E-05 50.5 0.0 127 130-256 368-495 (495)
405 PRK15455 PrkA family serine pr 76.6 4.3 9.2E-05 45.8 5.5 69 489-558 75-163 (644)
406 PRK04406 hypothetical protein; 76.6 25 0.00054 28.1 8.3 56 361-416 3-58 (75)
407 KOG1924 RhoA GTPase effector D 76.5 1.6E+02 0.0034 34.4 30.6 370 1-374 529-1030(1102)
408 KOG3809 Microtubule-binding pr 76.3 47 0.001 35.4 12.4 102 109-210 478-579 (583)
409 PF05335 DUF745: Protein of un 76.3 75 0.0016 30.5 19.4 117 208-324 56-172 (188)
410 KOG2264 Exostosin EXT1L [Signa 76.2 24 0.00052 38.8 10.6 70 172-241 81-150 (907)
411 COG1730 GIM5 Predicted prefold 76.0 63 0.0014 29.5 14.8 96 309-404 5-143 (145)
412 PF05496 RuvB_N: Holliday junc 75.8 3.5 7.6E-05 40.5 4.1 41 493-533 23-65 (233)
413 TIGR00635 ruvB Holliday juncti 75.4 2 4.4E-05 45.2 2.6 37 499-535 9-47 (305)
414 PF02562 PhoH: PhoH-like prote 75.4 1.9 4.1E-05 42.1 2.2 25 507-533 10-34 (205)
415 PF13949 ALIX_LYPXL_bnd: ALIX 75.3 1.1E+02 0.0024 31.9 32.1 260 164-429 10-294 (296)
416 KOG0989 Replication factor C, 75.3 2.4 5.2E-05 43.2 2.9 42 493-534 30-73 (346)
417 PRK06975 bifunctional uroporph 75.0 1.8E+02 0.0039 34.3 19.9 202 1-245 278-501 (656)
418 PF04108 APG17: Autophagy prot 74.9 1.4E+02 0.003 32.9 42.0 291 112-405 46-389 (412)
419 TIGR03499 FlhF flagellar biosy 74.9 2.7 5.9E-05 43.6 3.4 39 497-535 164-211 (282)
420 PF02456 Adeno_IVa2: Adenoviru 74.9 1.2 2.6E-05 45.3 0.7 17 519-535 88-104 (369)
421 PF13479 AAA_24: AAA domain 74.7 1.3 2.9E-05 43.8 1.0 19 517-535 2-20 (213)
422 KOG2008 BTK-associated SH3-dom 74.4 1.1E+02 0.0023 31.3 30.3 216 109-324 9-232 (426)
423 PRK04406 hypothetical protein; 74.4 33 0.00071 27.4 8.5 57 288-344 3-59 (75)
424 PRK12723 flagellar biosynthesi 74.2 3 6.4E-05 45.2 3.5 43 493-535 141-191 (388)
425 PF13555 AAA_29: P-loop contai 74.2 1.3 2.7E-05 33.8 0.5 16 520-535 25-40 (62)
426 PF08298 AAA_PrkA: PrkA AAA do 74.1 6.9 0.00015 41.2 6.0 66 489-558 59-143 (358)
427 KOG2077 JNK/SAPK-associated pr 74.1 1.1E+02 0.0024 34.0 14.9 125 189-313 299-423 (832)
428 TIGR02971 heterocyst_DevB ABC 74.0 1.3E+02 0.0027 32.0 20.6 143 168-313 53-203 (327)
429 cd09237 V_ScBro1_like Protein- 74.0 1.3E+02 0.0029 32.3 30.4 316 129-448 4-356 (356)
430 PRK09183 transposase/IS protei 73.9 1.8 3.8E-05 44.4 1.7 43 489-535 77-119 (259)
431 TIGR03345 VI_ClpV1 type VI sec 73.6 14 0.00031 44.7 9.4 205 317-534 398-612 (852)
432 PRK00409 recombination and DNA 73.5 1.4E+02 0.0031 35.9 17.6 112 238-349 504-625 (782)
433 PRK02119 hypothetical protein; 73.5 29 0.00062 27.6 8.0 56 289-344 2-57 (73)
434 PF08826 DMPK_coil: DMPK coile 73.4 38 0.00082 25.7 10.1 61 230-290 1-61 (61)
435 PF08826 DMPK_coil: DMPK coile 73.3 38 0.00083 25.7 10.1 61 195-255 1-61 (61)
436 PF06428 Sec2p: GDP/GTP exchan 73.3 20 0.00042 30.4 7.4 78 355-438 1-78 (100)
437 PF13671 AAA_33: AAA domain; P 73.2 1.5 3.3E-05 40.0 1.0 14 520-533 1-14 (143)
438 COG1136 SalX ABC-type antimicr 73.0 1.4 3.1E-05 43.4 0.7 27 521-548 34-62 (226)
439 PF12775 AAA_7: P-loop contain 73.0 2.1 4.6E-05 44.1 2.0 42 493-535 3-50 (272)
440 PF02403 Seryl_tRNA_N: Seryl-t 72.8 56 0.0012 28.1 10.6 94 256-350 4-100 (108)
441 PF00910 RNA_helicase: RNA hel 72.6 1.1 2.4E-05 38.8 -0.2 15 521-535 1-15 (107)
442 PF10205 KLRAQ: Predicted coil 72.4 59 0.0013 27.5 11.8 74 216-289 2-75 (102)
443 PF01935 DUF87: Domain of unkn 72.4 1.3 2.9E-05 44.3 0.4 15 521-535 26-40 (229)
444 KOG2685 Cystoskeletal protein 72.4 1.4E+02 0.0031 32.0 36.7 277 116-399 69-409 (421)
445 PF10458 Val_tRNA-synt_C: Valy 72.3 29 0.00064 26.8 7.8 65 359-423 1-65 (66)
446 PRK04195 replication factor C 72.3 2.8 6E-05 47.4 2.9 37 499-535 19-56 (482)
447 PF10805 DUF2730: Protein of u 72.2 49 0.0011 28.5 9.8 66 218-283 34-101 (106)
448 KOG3647 Predicted coiled-coil 71.9 1.1E+02 0.0024 30.5 21.0 165 185-349 50-214 (338)
449 PF08581 Tup_N: Tup N-terminal 71.8 51 0.0011 26.6 12.1 75 244-321 1-75 (79)
450 PF07724 AAA_2: AAA domain (Cd 71.8 1.7 3.7E-05 41.2 0.9 16 519-534 4-19 (171)
451 PF02403 Seryl_tRNA_N: Seryl-t 71.7 46 0.00099 28.7 9.8 69 254-322 29-100 (108)
452 PRK00409 recombination and DNA 71.7 1.7E+02 0.0037 35.3 17.6 112 224-335 504-625 (782)
453 PF06705 SF-assemblin: SF-asse 71.3 1.2E+02 0.0026 30.7 37.2 232 141-387 5-240 (247)
454 smart00283 MA Methyl-accepting 71.3 1.2E+02 0.0026 30.6 38.3 241 107-351 1-262 (262)
455 PF12846 AAA_10: AAA-like doma 71.1 1.5 3.3E-05 45.9 0.5 18 518-535 1-18 (304)
456 PF12761 End3: Actin cytoskele 71.1 23 0.0005 33.8 8.1 98 220-317 97-195 (195)
457 PRK06547 hypothetical protein; 71.0 3.4 7.4E-05 39.2 2.8 28 506-533 3-30 (172)
458 PRK15178 Vi polysaccharide exp 71.0 1.7E+02 0.0037 32.2 17.1 156 147-321 225-383 (434)
459 PF10368 YkyA: Putative cell-w 71.0 1.1E+02 0.0023 30.0 17.5 181 260-440 17-200 (204)
460 PRK02119 hypothetical protein; 71.0 44 0.00096 26.5 8.5 54 276-329 3-56 (73)
461 TIGR00631 uvrb excinuclease AB 70.9 4.5 9.7E-05 47.3 4.2 93 487-584 2-98 (655)
462 cd00176 SPEC Spectrin repeats, 70.6 1E+02 0.0023 29.6 22.0 201 165-380 2-211 (213)
463 PF12761 End3: Actin cytoskele 70.6 45 0.00098 31.9 9.9 91 213-303 97-195 (195)
464 cd09236 V_AnPalA_UmRIM20_like 70.5 1.6E+02 0.0034 31.7 24.3 268 172-448 73-353 (353)
465 PF13086 AAA_11: AAA domain; P 70.4 2.3 4.9E-05 42.5 1.6 28 507-535 7-34 (236)
466 PF07851 TMPIT: TMPIT-like pro 70.4 73 0.0016 33.4 12.3 81 209-289 1-89 (330)
467 PTZ00361 26 proteosome regulat 70.4 33 0.00072 37.9 10.6 138 398-535 59-234 (438)
468 PF01920 Prefoldin_2: Prefoldi 70.2 68 0.0015 27.3 13.4 78 250-327 1-100 (106)
469 COG1223 Predicted ATPase (AAA+ 70.1 1.8 3.9E-05 42.9 0.7 15 520-534 153-167 (368)
470 COG5019 CDC3 Septin family pro 69.9 2.1 4.6E-05 44.8 1.2 24 515-538 20-46 (373)
471 PF06705 SF-assemblin: SF-asse 69.9 1.3E+02 0.0028 30.4 36.8 231 109-349 4-236 (247)
472 PF04102 SlyX: SlyX; InterPro 69.9 32 0.00069 26.9 7.5 52 293-344 1-52 (69)
473 PF07851 TMPIT: TMPIT-like pro 69.9 78 0.0017 33.2 12.4 81 272-352 1-89 (330)
474 KOG0743 AAA+-type ATPase [Post 69.9 5.3 0.00012 43.1 4.1 106 481-619 186-303 (457)
475 PF07728 AAA_5: AAA domain (dy 69.8 1.6 3.5E-05 39.7 0.3 15 521-535 2-16 (139)
476 KOG2010 Double stranded RNA bi 69.8 79 0.0017 32.4 11.8 97 246-342 110-207 (405)
477 TIGR01010 BexC_CtrB_KpsE polys 69.7 1.7E+02 0.0036 31.6 20.6 157 148-306 143-309 (362)
478 PF02050 FliJ: Flagellar FliJ 69.6 74 0.0016 27.5 17.7 111 222-332 1-116 (123)
479 COG1126 GlnQ ABC-type polar am 69.5 1.8 3.9E-05 41.9 0.5 23 513-535 17-45 (240)
480 PF06548 Kinesin-related: Kine 69.5 1.7E+02 0.0038 31.7 34.2 249 91-339 203-484 (488)
481 PF08580 KAR9: Yeast cortical 69.5 2.4E+02 0.0052 33.3 33.2 268 164-434 5-329 (683)
482 KOG4657 Uncharacterized conser 69.4 1.2E+02 0.0025 29.7 20.9 140 180-319 18-158 (246)
483 PRK10536 hypothetical protein; 69.3 2.4 5.2E-05 42.7 1.4 39 486-533 51-89 (262)
484 PF10805 DUF2730: Protein of u 69.2 62 0.0014 27.8 9.9 66 260-325 34-101 (106)
485 PF10046 BLOC1_2: Biogenesis o 69.2 70 0.0015 27.1 12.9 85 175-259 12-99 (99)
486 PF06810 Phage_GP20: Phage min 69.1 68 0.0015 29.8 10.8 78 229-306 2-86 (155)
487 TIGR01069 mutS2 MutS2 family p 69.1 1.7E+02 0.0036 35.3 16.7 108 238-345 499-607 (771)
488 PF06120 Phage_HK97_TLTM: Tail 69.1 1.5E+02 0.0032 30.8 21.7 162 226-395 41-202 (301)
489 TIGR01069 mutS2 MutS2 family p 68.9 1.8E+02 0.0039 35.0 17.0 112 239-352 496-607 (771)
490 TIGR03495 phage_LysB phage lys 68.8 89 0.0019 28.1 11.8 77 213-289 20-96 (135)
491 COG1219 ClpX ATP-dependent pro 68.8 2.2 4.7E-05 43.7 0.9 15 519-533 98-112 (408)
492 PHA00729 NTP-binding motif con 68.7 4.1 8.8E-05 40.3 2.8 28 506-533 5-32 (226)
493 KOG2228 Origin recognition com 68.6 5.9 0.00013 41.1 3.9 36 500-535 30-66 (408)
494 COG1419 FlhF Flagellar GTP-bin 68.5 4.1 8.9E-05 43.7 2.9 42 494-535 174-220 (407)
495 PF05970 PIF1: PIF1-like helic 68.3 3.3 7.2E-05 44.8 2.3 37 496-535 3-39 (364)
496 PF05700 BCAS2: Breast carcino 68.3 1.3E+02 0.0028 29.8 18.4 122 133-257 99-220 (221)
497 PRK00295 hypothetical protein; 68.2 52 0.0011 25.7 8.3 51 294-344 3-53 (68)
498 KOG3809 Microtubule-binding pr 68.0 1.8E+02 0.0039 31.3 19.7 245 1-280 308-579 (583)
499 KOG0953 Mitochondrial RNA heli 67.9 7.8 0.00017 42.8 4.9 65 521-585 194-282 (700)
500 COG3352 FlaC Putative archaeal 67.8 91 0.002 28.3 10.5 97 240-336 44-141 (157)
No 1
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=4.3e-84 Score=718.20 Aligned_cols=417 Identities=54% Similarity=0.780 Sum_probs=352.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhhhcccCceeEEe
Q 003711 369 NQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLI---EGEKLRKRLHNTILELKGNIRVFC 445 (801)
Q Consensus 369 ~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~---~~e~~~~~l~~~l~~l~~~i~~~~ 445 (801)
.++..|+.++..++..+..+......+..++......+..+..++..+...+. ..+..++.|++++.+++|+|||||
T Consensus 241 ~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~C 320 (670)
T KOG0239|consen 241 KKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFC 320 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEE
Confidence 33444444444444444444444444444444433333333334444333333 344889999999999999999999
Q ss_pred eeCCCCCCCCCCCCCceEEcCCCccccccceeeecCCceeEEEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeec
Q 003711 446 RVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYG 525 (801)
Q Consensus 446 r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG 525 (801)
||||..+.+.......++.+++...+......-......+.|.||+||+|.++|++||.++.|+|++++||||+||||||
T Consensus 321 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYG 400 (670)
T KOG0239|consen 321 RVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAYG 400 (670)
T ss_pred EecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEec
Confidence 99999988877655566666665333333333333444557999999999999999999999999999999999999999
Q ss_pred cCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCCCccchhhhhccCCCce
Q 003711 526 QTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQY 605 (801)
Q Consensus 526 ~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~~~~~~~~~~~~~ 605 (801)
||||||||||.|+ .+...|||||++.+||..+..... +|.|.+.+||+||||++|+|||++.. .+..+
T Consensus 401 QTGSGKTyTM~G~--~~~~~Giipral~~lF~~~~~~~~-g~~y~~~~s~~EIYNe~i~DlL~~~~---------~~~k~ 468 (670)
T KOG0239|consen 401 QTGSGKTYTMSGP--TPEDPGIIPRALEKLFRTITSLKS-GWKYDKTVSMLEIYNEAIRDLLSDES---------YVGKL 468 (670)
T ss_pred ccCCCccccccCC--CcccCCccHHHHHHHHHHHHhhcc-CceEEeeeehhHHHHHHHHHhccccc---------cccce
Confidence 9999999999995 233459999999999999999755 99999999999999999999998764 23788
Q ss_pred EEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeeccCCCCceEEEEEEEEecC
Q 003711 606 AIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQQVQGILNLIDLA 685 (801)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~l~~vDLa 685 (801)
.|+++..+..+|.+++.+.|.+..++..+++.|..+|++++|.+|..|||||+||+|+|...+..+...+.|.|+|||||
T Consensus 469 ~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLA 548 (670)
T KOG0239|consen 469 EIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLA 548 (670)
T ss_pred eEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCcccccccccccCCCccEEEEEecCCCCCCHH
Q 003711 686 GSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVG 765 (801)
Q Consensus 686 gse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~lL~~~l~g~s~~~~i~~isp~~~~~~ 765 (801)
||||+++++++|.|++|+++||+||++||+||.+|+.. ..||||||||||+||+|||||+++|+||++|||...++.
T Consensus 549 GSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k---~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~ 625 (670)
T KOG0239|consen 549 GSERVSKSGVTGERLKEAQNINKSLSALGDVISALASK---RSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALF 625 (670)
T ss_pred cCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhc---CCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHh
Confidence 99999999999999999999999999999999999984 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCcccccccCccccccC
Q 003711 766 ESLCSLRFAARVNACEIGTPRRQTSMRSSESRLSL 800 (801)
Q Consensus 766 etl~tL~fa~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (801)
||+++|+||.|++.|++|+.++++......+..++
T Consensus 626 Etl~sL~FA~rv~~~~lG~a~~~~~~~~~~~~~~~ 660 (670)
T KOG0239|consen 626 ETLCSLRFATRVRSVELGSARKQVSTSDDVSLKRF 660 (670)
T ss_pred hhhhccchHHHhhceecccccccccccchhhhhhh
Confidence 99999999999999999999999887776665544
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-78 Score=645.98 Aligned_cols=334 Identities=43% Similarity=0.643 Sum_probs=292.4
Q ss_pred cCceeEEeeeCCCCCCCCCCCCCceEEcCCCccccccce-eeecCCceeEEEeceecCCCCChhhHHHH-HHHHHHHhhc
Q 003711 438 KGNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGI-DIMQNGQKHSFSFDRVFMPDESQEDVFVE-ISQLVQSALD 515 (801)
Q Consensus 438 ~~~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~f~fd~v~~~~~~~~~~~~~-~~~~v~~~~~ 515 (801)
...+.++.|+||+...+...+...++.++.......-.- .....+..+.|.||.||+++.+|++||++ +.|+|++|+.
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 356788999999988766655555555544432110000 00113456789999999999999999987 5699999999
Q ss_pred CCceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCCCccchh
Q 003711 516 GYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASR 595 (801)
Q Consensus 516 G~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~~~ 595 (801)
|||+||||||||||||||||+|+ ++...|||||+|.+||.+|.... ....|.|+|||+|||||.|+|||++...
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~--~~~~~GiiPraf~~LF~~I~~~~-~~~~f~vrvS~lEiYnE~i~DLL~~~~~--- 157 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGP--DPELRGLIPRAFEHLFRHIDERK-EKTRFLVRVSYLEIYNESIRDLLSPVNP--- 157 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCC--ChhhCCchhHHHHHHHHHHHhcc-ccceEEEEeehHHHHhHHHHHHhCccCc---
Confidence 99999999999999999999999 36788999999999999998853 3448999999999999999999998642
Q ss_pred hhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeecc---CCCC
Q 003711 596 LENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLN---ESTE 672 (801)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~---~~~~ 672 (801)
+.+.+++++..|++|.|++.+.|.|++++..+|..|..+|++++|.||..|||||+||+|+|+..- ....
T Consensus 158 -------~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~ 230 (574)
T KOG4280|consen 158 -------KGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLM 230 (574)
T ss_pred -------CCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCcc
Confidence 689999999999999999999999999999999999999999999999999999999999999822 2344
Q ss_pred ceEEEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCcccccccccccCCCccEE
Q 003711 673 QQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTL 752 (801)
Q Consensus 673 ~~~~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~lL~~~l~g~s~~~ 752 (801)
....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+... ..|||||||+||+||+|+|||||+|+
T Consensus 231 ~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~--~~HIPYRdSkLT~LLqdSLGGN~kT~ 308 (574)
T KOG4280|consen 231 SGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGS--KTHIPYRDSKLTRLLQDSLGGNSKTT 308 (574)
T ss_pred ccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccc--cCCCCcchhHHHHHHHHHcCCCceEE
Confidence 5678999999999999999999999999999999999999999999999874 34999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhhhcccCCCc
Q 003711 753 MFVNISPEASSVGESLCSLRFAARVNACEIGTPR 786 (801)
Q Consensus 753 ~i~~isp~~~~~~etl~tL~fa~~~~~~~~~~~~ 786 (801)
||+||||++.+++||++|||||.|++.|++-+..
T Consensus 309 mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~i 342 (574)
T KOG4280|consen 309 MIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVI 342 (574)
T ss_pred EEEecCchhhhhHHHHHHHHHHHHHHHhhccccc
Confidence 9999999999999999999999999999987643
No 3
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.2e-76 Score=609.30 Aligned_cols=330 Identities=38% Similarity=0.592 Sum_probs=306.6
Q ss_pred cCceeEEeeeCCCCCCCCCCCCCceEEcCCCccccccceeeecCCceeEEEeceecCCCCChhhHHHH-HHHHHHHhhcC
Q 003711 438 KGNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDESQEDVFVE-ISQLVQSALDG 516 (801)
Q Consensus 438 ~~~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~fd~v~~~~~~~~~~~~~-~~~~v~~~~~G 516 (801)
...|+|+||+||....|...+...+..|+..+ ..+-+-.+.+...|.||+||+++++|.+||.. +.|+|+.++.|
T Consensus 6 ~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~----~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~G 81 (607)
T KOG0240|consen 6 ECSIKVVCRFRPLNGLENNLGSKFIDCFENGE----NTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLG 81 (607)
T ss_pred CCceEEEEEeecCCchhhhcCCcCccCCCCCc----ceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhcc
Confidence 46799999999999988888876666665532 34455556677999999999999999999987 56999999999
Q ss_pred CceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCCCccchhh
Q 003711 517 YKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRL 596 (801)
Q Consensus 517 ~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~~~~ 596 (801)
||+||||||||||||||||.|...++...|||||++++||.+|..+ +.+.+|.|.|||||||+|+|+|||+|.+
T Consensus 82 YNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~-~~n~efhVkVsy~EIYmEKi~DLL~~~k----- 155 (607)
T KOG0240|consen 82 YNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSM-EENLEFHVKVSYFEIYMEKIRDLLDPEK----- 155 (607)
T ss_pred cceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcC-cccceEEEEEEeehhhhhHHHHHhCccc-----
Confidence 9999999999999999999999988888899999999999999885 6678999999999999999999999754
Q ss_pred hhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeeccCCCCceEE
Q 003711 597 ENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQQVQ 676 (801)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~~~~~~~~~ 676 (801)
.++.+.+|.+..++|.|+|...|.++++++.+++.|..+|+++.|.||.+|||||.||+|+|.+.|........
T Consensus 156 ------~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~ 229 (607)
T KOG0240|consen 156 ------TNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLS 229 (607)
T ss_pred ------CCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhcc
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCcccccccccccCCCccEEEEEe
Q 003711 677 GILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVN 756 (801)
Q Consensus 677 ~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~lL~~~l~g~s~~~~i~~ 756 (801)
|+|.+|||||||+.+++|+.|.-+.|++.||+||++||+||++|+.+ +..|||||||||||+|+|+|||||||.+|+|
T Consensus 230 gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g--~~shipYRDSKLTRILqdSLGGNsRTtlIi~ 307 (607)
T KOG0240|consen 230 GKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEG--PKSHIPYRDSKLTRILQDSLGGNSRTTLIIC 307 (607)
T ss_pred ccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcC--CCCCCcchhhHHHHHHHHHhCCCcceEEEEe
Confidence 99999999999999999999999999999999999999999999986 4789999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhhcccCCC
Q 003711 757 ISPEASSVGESLCSLRFAARVNACEIGTP 785 (801)
Q Consensus 757 isp~~~~~~etl~tL~fa~~~~~~~~~~~ 785 (801)
|||+.-+..||.+||+|+.|++.|++-+.
T Consensus 308 csPss~n~~ET~STl~fg~rak~ikN~v~ 336 (607)
T KOG0240|consen 308 CSPSSLNEAETKSTLRFGNRAKTIKNTVW 336 (607)
T ss_pred cCCccccccccccchhhccccccccchhh
Confidence 99999999999999999999999987654
No 4
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.9e-75 Score=646.12 Aligned_cols=334 Identities=39% Similarity=0.632 Sum_probs=291.8
Q ss_pred cCceeEEeeeCCCCCCCCCCCCCceEEcCCCccccccceeeecC--C--ceeEEEeceecCCCCChhhHHHH-HHHHHHH
Q 003711 438 KGNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQN--G--QKHSFSFDRVFMPDESQEDVFVE-ISQLVQS 512 (801)
Q Consensus 438 ~~~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~~--~--~~~~f~fd~v~~~~~~~~~~~~~-~~~~v~~ 512 (801)
..+|.|++|+||....|.......+|.+++. ++.|.+... + -.+.|.||+||+|++.|.+||+. |+|+|+.
T Consensus 48 ~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~----~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~e 123 (1041)
T KOG0243|consen 48 EVNIQVIVRCRPRNDRERKSKSSVVVSCDGI----RKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKE 123 (1041)
T ss_pred CCceEEEEEeCCCCchhhhcCCCeEEecCCC----cceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHH
Confidence 4679999999999988887776667777663 223333332 3 37889999999999999999965 8899999
Q ss_pred hhcCCceEEEeeccCCcccceeeccCC-----CCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceeccc
Q 003711 513 ALDGYKVCIFAYGQTGSGKTYTMMGKP-----GHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLL 587 (801)
Q Consensus 513 ~~~G~n~~v~~yG~tgsGKt~tl~G~~-----~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL 587 (801)
|+.|||||||||||||+||||||+|+- ..|...|||||++.+||+.+.. .+.+|.|.|||+|+|||.|+|||
T Consensus 124 Vl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~---~~~EYsvKVSfLELYNEEl~DLL 200 (1041)
T KOG0243|consen 124 VLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEA---QGAEYSVKVSFLELYNEELTDLL 200 (1041)
T ss_pred HhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHh---cCCeEEEEEEehhhhhHHHHHhc
Confidence 999999999999999999999999953 2344579999999999998764 46899999999999999999999
Q ss_pred CCCccchhhhhccCCCceEEEe-----CCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEE
Q 003711 588 STNRDASRLENACNGKQYAIKH-----DASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTL 662 (801)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i 662 (801)
++..... +...++. +..|++.|.|+.+++|++..|++++|+.|...|.+++|.||..|||||+||+|
T Consensus 201 a~~~~~~--------~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsI 272 (1041)
T KOG0243|consen 201 ASEDTSD--------KKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSI 272 (1041)
T ss_pred CCccccc--------cccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEE
Confidence 9876531 2222222 55789999999999999999999999999999999999999999999999999
Q ss_pred EEeec---cCCCCceEEEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCccccc
Q 003711 663 RISGL---NESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTY 739 (801)
Q Consensus 663 ~i~~~---~~~~~~~~~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~ 739 (801)
.|.-. ..+.+....|+|++|||||||..+++|+.+.|.+|+..||+||.+||.||.||.+. ..|||||+|||||
T Consensus 273 tvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~---s~HIPYRESKLTR 349 (1041)
T KOG0243|consen 273 TVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEH---SGHIPYRESKLTR 349 (1041)
T ss_pred EEEEecCCCcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHcc---CCCCCchHHHHHH
Confidence 88532 22334566899999999999999999999999999999999999999999999986 6799999999999
Q ss_pred ccccccCCCccEEEEEecCCCCCCHHHHHHHHHHHHHhhhcccCCCcccc
Q 003711 740 LLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAARVNACEIGTPRRQT 789 (801)
Q Consensus 740 lL~~~l~g~s~~~~i~~isp~~~~~~etl~tL~fa~~~~~~~~~~~~~~~ 789 (801)
||||+|||..+|+||+||||+..+++|||+||.||.|++.|++.|...|-
T Consensus 350 LLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQk 399 (1041)
T KOG0243|consen 350 LLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQK 399 (1041)
T ss_pred HHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchH
Confidence 99999999999999999999999999999999999999999999976654
No 5
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.2e-73 Score=603.91 Aligned_cols=326 Identities=37% Similarity=0.559 Sum_probs=290.5
Q ss_pred ceeEEeeeCCCCCCCCCCCCCceEEcCCCccccccc--------eeeecCCceeEEEeceecCCCCChhhHHHHH-HHHH
Q 003711 440 NIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRG--------IDIMQNGQKHSFSFDRVFMPDESQEDVFVEI-SQLV 510 (801)
Q Consensus 440 ~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--------i~~~~~~~~~~f~fd~v~~~~~~~~~~~~~~-~~~v 510 (801)
+|+|++|+||....|...+...++.++++..+.-.. ......+..+.|.||+||+++++|.+||+.+ .|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 589999999999888766666666666542210000 0001124568999999999999999999875 5999
Q ss_pred HHhhcCCceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCCC
Q 003711 511 QSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTN 590 (801)
Q Consensus 511 ~~~~~G~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~ 590 (801)
+++++|+|+||||||+|||||||||+|++.++ |||||++++||+.+... ...+.|.|++||+|||||+|+|||+++
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~---Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIyne~v~DLL~~~ 156 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDP---GLMVLTMKDLFDKIEER-KDDKEFEVSLSYLEIYNETIRDLLSPS 156 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCC---chHHHHHHHHHHhhhhc-ccCceEEEEEEEEEEECCEEEECCCCC
Confidence 99999999999999999999999999988665 99999999999999874 357899999999999999999999875
Q ss_pred ccchhhhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeeccCC
Q 003711 591 RDASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNES 670 (801)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~~~ 670 (801)
..++.+++++.+++++.|++++.|.|.+++.++|+.|..+|.+++|.+|..|||||+||+|+|.+.+..
T Consensus 157 -----------~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~ 225 (338)
T cd01370 157 -----------SGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRT 225 (338)
T ss_pred -----------CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecC
Confidence 267899999999999999999999999999999999999999999999999999999999999988765
Q ss_pred ---CCceEEEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCcccccccccccCC
Q 003711 671 ---TEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGG 747 (801)
Q Consensus 671 ---~~~~~~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~lL~~~l~g 747 (801)
......|+|+|||||||||..+.+..|.+++|+..||+||.+|++||.+|+....+..|||||+|+||+||+|+|||
T Consensus 226 ~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lgg 305 (338)
T cd01370 226 ASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGG 305 (338)
T ss_pred CCCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCC
Confidence 56678999999999999999999999999999999999999999999999987544589999999999999999999
Q ss_pred CccEEEEEecCCCCCCHHHHHHHHHHHHHhhhc
Q 003711 748 DSKTLMFVNISPEASSVGESLCSLRFAARVNAC 780 (801)
Q Consensus 748 ~s~~~~i~~isp~~~~~~etl~tL~fa~~~~~~ 780 (801)
||+|+||+||||+..+++||++||+||.|++.|
T Consensus 306 n~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 306 NCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred CCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999865
No 6
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-75 Score=635.11 Aligned_cols=334 Identities=38% Similarity=0.612 Sum_probs=297.5
Q ss_pred CceeEEeeeCCCCCCCCCCCCCceEEcCCCccccccceeeecCCceeEEEeceecCCC-------CChhhHHHHHH-HHH
Q 003711 439 GNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPD-------ESQEDVFVEIS-QLV 510 (801)
Q Consensus 439 ~~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~fd~v~~~~-------~~~~~~~~~~~-~~v 510 (801)
..+.|.+||||.+..|......-+|..+.++... |.-..+.....|.||..||.- ++|..||..+. +++
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~tti---i~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL 80 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTI---INPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREML 80 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCCceee---ecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHH
Confidence 4688999999999999887666677777665321 111223345569999999764 47999999886 799
Q ss_pred HHhhcCCceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCCC
Q 003711 511 QSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTN 590 (801)
Q Consensus 511 ~~~~~G~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~ 590 (801)
+++|+|||+||||||||||||||||+|.+ +|+..|||||+|++||..+......+..|.|.|||+|||||+|+|||+.+
T Consensus 81 ~~AfEGYN~ClFAYGQTGSGKSYTMMG~~-~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p 159 (1221)
T KOG0245|consen 81 DHAFEGYNVCLFAYGQTGSGKSYTMMGFQ-EPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAP 159 (1221)
T ss_pred HHHhcccceEEEEeccCCCCcceeeeccC-CCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCC
Confidence 99999999999999999999999999987 45567999999999999999988889999999999999999999999942
Q ss_pred ccchhhhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeeccCC
Q 003711 591 RDASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNES 670 (801)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~~~ 670 (801)
. ++..++||+++--|++|.+|+.+.|+|..++..+|..|.+.|.+++|+||++|||||+||+|.+.+....
T Consensus 160 ~---------~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~ 230 (1221)
T KOG0245|consen 160 K---------SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHD 230 (1221)
T ss_pred C---------CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeecc
Confidence 2 3478999999999999999999999999999999999999999999999999999999999999875433
Q ss_pred ----CCceEEEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhccc----CCCCCcccCCcccccccc
Q 003711 671 ----TEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKE----KKEDHVPFRNSKLTYLLQ 742 (801)
Q Consensus 671 ----~~~~~~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~----~~~~~vp~r~s~LT~lL~ 742 (801)
.+...+|+|++||||||||.+.+|+.|.|++|+..|||||.+||.||.|||... .+..+||||||.|||||+
T Consensus 231 ~~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLk 310 (1221)
T KOG0245|consen 231 QDTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLK 310 (1221)
T ss_pred ccCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHH
Confidence 346689999999999999999999999999999999999999999999999764 344699999999999999
Q ss_pred cccCCCccEEEEEecCCCCCCHHHHHHHHHHHHHhhhcccCCC
Q 003711 743 PCLGGDSKTLMFVNISPEASSVGESLCSLRFAARVNACEIGTP 785 (801)
Q Consensus 743 ~~l~g~s~~~~i~~isp~~~~~~etl~tL~fa~~~~~~~~~~~ 785 (801)
+.|||||||+||++|||++.+|+|||+|||||+|++.|++...
T Consensus 311 EnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~av 353 (1221)
T KOG0245|consen 311 ENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAV 353 (1221)
T ss_pred HhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccce
Confidence 9999999999999999999999999999999999999998653
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=3.8e-73 Score=599.68 Aligned_cols=325 Identities=41% Similarity=0.630 Sum_probs=285.5
Q ss_pred CceeEEeeeCCCCCCCCCCCCCceEEcCCCccccccceeeecCCceeEEEeceecCCCCChhhHHHHH-HHHHHHhhcCC
Q 003711 439 GNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDESQEDVFVEI-SQLVQSALDGY 517 (801)
Q Consensus 439 ~~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~fd~v~~~~~~~~~~~~~~-~~~v~~~~~G~ 517 (801)
.+|+|++|+||....|.+.+...++...++.. +.+ .....+.|.||+||+++++|.+||+.+ .|+|+++++|+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~-----~~~-~~~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~ 74 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDT-----LVW-HSHPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGY 74 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCc-----EEe-eCCCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 36899999999998887655555555443321 112 223368999999999999999999875 69999999999
Q ss_pred ceEEEeeccCCcccceeeccCCCCC-----CCCCchHHHHHHHHHHHHhhh---hcCCeeeEEEEEEEEEccceecccCC
Q 003711 518 KVCIFAYGQTGSGKTYTMMGKPGHP-----DLKGLIPRSLEQIFQTRQSLL---SQGWKYEMQVSMLEIYNETIRDLLST 589 (801)
Q Consensus 518 n~~v~~yG~tgsGKt~tl~G~~~~~-----~~~Gii~r~~~~lf~~~~~~~---~~~~~~~v~~S~~ei~~e~v~DLL~~ 589 (801)
|+||||||+|||||||||+|+...+ ...|||||++++||..+.... .....|.|++||+|||||+|+|||.+
T Consensus 75 n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~ 154 (337)
T cd01373 75 NGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDP 154 (337)
T ss_pred ceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCC
Confidence 9999999999999999999987543 356999999999999886532 24578999999999999999999986
Q ss_pred CccchhhhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeeccC
Q 003711 590 NRDASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNE 669 (801)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~~ 669 (801)
.. ..+.+++++.+++++.|++++.|.|.+|+.++|..|..+|.+++|.+|..|||||+||+|+|...+.
T Consensus 155 ~~-----------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~ 223 (337)
T cd01373 155 TS-----------RNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEK 223 (337)
T ss_pred CC-----------CCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeec
Confidence 43 5688999999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCC--ceEEEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhccc-CCCCCcccCCcccccccccccC
Q 003711 670 STE--QQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKE-KKEDHVPFRNSKLTYLLQPCLG 746 (801)
Q Consensus 670 ~~~--~~~~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~-~~~~~vp~r~s~LT~lL~~~l~ 746 (801)
... ....|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+... .+..|||||+||||+||+|+||
T Consensus 224 ~~~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLg 303 (337)
T cd01373 224 KASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLG 303 (337)
T ss_pred CCCCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcC
Confidence 332 4567999999999999999999999999999999999999999999998642 3468999999999999999999
Q ss_pred CCccEEEEEecCCCCCCHHHHHHHHHHHHHhhhc
Q 003711 747 GDSKTLMFVNISPEASSVGESLCSLRFAARVNAC 780 (801)
Q Consensus 747 g~s~~~~i~~isp~~~~~~etl~tL~fa~~~~~~ 780 (801)
|||+|+||+||||+..+++||++||+||.|++.|
T Consensus 304 gns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 304 GNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999865
No 8
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=4.6e-73 Score=635.26 Aligned_cols=329 Identities=39% Similarity=0.610 Sum_probs=286.7
Q ss_pred cCceeEEeeeCCCCCCCCCCCCCceEEcCCCccccccceeeecCCceeEEEeceecCCCCChhhHHHHH-HHHHHHhhcC
Q 003711 438 KGNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDESQEDVFVEI-SQLVQSALDG 516 (801)
Q Consensus 438 ~~~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~fd~v~~~~~~~~~~~~~~-~~~v~~~~~G 516 (801)
...|+|++||||....+. +... +....+. .+.+ ..+.|.||+||+++++|.+||+.+ .|+|+++++|
T Consensus 97 ds~VkV~VRVRPl~~~E~--g~~i-V~~~s~d-----sl~I----~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdG 164 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEE--GEMI-VQKMSND-----SLTI----NGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAG 164 (1320)
T ss_pred CCCeEEEEEcCCCCCccC--CCee-EEEcCCC-----eEEE----eCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 568999999999987643 3333 3333322 1222 136899999999999999999885 5899999999
Q ss_pred CceEEEeeccCCcccceeeccCCC-------CCCCCCchHHHHHHHHHHHHhh----hhcCCeeeEEEEEEEEEccceec
Q 003711 517 YKVCIFAYGQTGSGKTYTMMGKPG-------HPDLKGLIPRSLEQIFQTRQSL----LSQGWKYEMQVSMLEIYNETIRD 585 (801)
Q Consensus 517 ~n~~v~~yG~tgsGKt~tl~G~~~-------~~~~~Gii~r~~~~lf~~~~~~----~~~~~~~~v~~S~~ei~~e~v~D 585 (801)
||+||||||||||||||||+|+.. .....|||||++++||..+... ....+.|.|+|||||||||+|||
T Consensus 165 yNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~D 244 (1320)
T PLN03188 165 FNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITD 244 (1320)
T ss_pred CcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCccee
Confidence 999999999999999999999753 1245799999999999998652 23467899999999999999999
Q ss_pred ccCCCccchhhhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEe
Q 003711 586 LLSTNRDASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRIS 665 (801)
Q Consensus 586 LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~ 665 (801)
||++.. ..+.++++..++++|.|++++.|.|.+++..+|..|..+|.+++|.+|..|||||+||+|.|.
T Consensus 245 LLsp~~-----------k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ve 313 (1320)
T PLN03188 245 LLDPSQ-----------KNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVE 313 (1320)
T ss_pred cccccc-----------CCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEE
Confidence 998753 568899999999999999999999999999999999999999999999999999999999998
Q ss_pred eccC----CCCceEEEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhccc--CCCCCcccCCccccc
Q 003711 666 GLNE----STEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKE--KKEDHVPFRNSKLTY 739 (801)
Q Consensus 666 ~~~~----~~~~~~~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~--~~~~~vp~r~s~LT~ 739 (801)
.... .......|+|+|||||||||...+++.|.+++|+.+||+||++|++||.+|+... .+..|||||+||||+
T Consensus 314 s~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTr 393 (1320)
T PLN03188 314 SRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTF 393 (1320)
T ss_pred EeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHH
Confidence 6432 2234568999999999999999999999999999999999999999999998642 345799999999999
Q ss_pred ccccccCCCccEEEEEecCCCCCCHHHHHHHHHHHHHhhhcccCCCcccc
Q 003711 740 LLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAARVNACEIGTPRRQT 789 (801)
Q Consensus 740 lL~~~l~g~s~~~~i~~isp~~~~~~etl~tL~fa~~~~~~~~~~~~~~~ 789 (801)
||+|+|||||+|+||+||||+..+++||++||+||.|++.|++.+..+..
T Consensus 394 LLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~ 443 (1320)
T PLN03188 394 LLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEV 443 (1320)
T ss_pred HHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccc
Confidence 99999999999999999999999999999999999999999998876644
No 9
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.1e-71 Score=589.73 Aligned_cols=325 Identities=38% Similarity=0.572 Sum_probs=284.3
Q ss_pred CceeEEeeeCCCCCCCCCCCCCceEEcCCCccccccceee--------ecCCceeEEEeceecCCCCChhhHHHHH-HHH
Q 003711 439 GNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDI--------MQNGQKHSFSFDRVFMPDESQEDVFVEI-SQL 509 (801)
Q Consensus 439 ~~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~f~fd~v~~~~~~~~~~~~~~-~~~ 509 (801)
+.|+|++|+||....|...+...++.++++..+......- ......+.|.||+||+++++|.+||+.+ .|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 4689999999999887766665666665543321110000 0123567999999999999999999874 689
Q ss_pred HHHhhcCCceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCC
Q 003711 510 VQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLST 589 (801)
Q Consensus 510 v~~~~~G~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~ 589 (801)
|+++++|+|+||||||+|||||||||+|++.++ |||||++++||+.+.. |.|++||||||||+|+|||++
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~---Gli~r~~~~lF~~~~~-------~~v~~S~~EIyne~v~DLL~~ 150 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDG---GILPRSLDVIFNSIGG-------YSVFVSYVEIYNNYIYDLLED 150 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCC---chHHHHHHHHHHHHHh-------eeEEEEEEEEeCCEeEeCCCC
Confidence 999999999999999999999999999998655 9999999999998765 899999999999999999998
Q ss_pred CccchhhhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeeccC
Q 003711 590 NRDASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNE 669 (801)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~~ 669 (801)
..... ...+++.++++..+++++.|++++.|.|.+|+..+|..|..+|.+++|.+|..|||||+||+|+|.+...
T Consensus 151 ~~~~~-----~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~ 225 (345)
T cd01368 151 SPSST-----KKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPG 225 (345)
T ss_pred ccccc-----cCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEecc
Confidence 65421 1236789999999999999999999999999999999999999999999999999999999999987654
Q ss_pred C--------CCceEEEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhcccC---CCCCcccCCcccc
Q 003711 670 S--------TEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEK---KEDHVPFRNSKLT 738 (801)
Q Consensus 670 ~--------~~~~~~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~---~~~~vp~r~s~LT 738 (801)
. ......|+|+||||||||+..+.+..|.+++|+..||+||++|++||.+|+.... +..|||||+|+||
T Consensus 226 ~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT 305 (345)
T cd01368 226 DSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLT 305 (345)
T ss_pred CcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHH
Confidence 3 2456789999999999999999999999999999999999999999999987432 4789999999999
Q ss_pred cccccccCCCccEEEEEecCCCCCCHHHHHHHHHHHHHhh
Q 003711 739 YLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAARVN 778 (801)
Q Consensus 739 ~lL~~~l~g~s~~~~i~~isp~~~~~~etl~tL~fa~~~~ 778 (801)
+||+|+|||||+|+||+||||+..+++||++||+||.+++
T Consensus 306 ~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 306 HLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999864
No 10
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=2.1e-70 Score=584.95 Aligned_cols=330 Identities=41% Similarity=0.644 Sum_probs=295.9
Q ss_pred CceeEEeeeCCCCCCCCCCCCCceEEcCCCccccccceeeec-------CCceeEEEeceecCCC-------CChhhHHH
Q 003711 439 GNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQ-------NGQKHSFSFDRVFMPD-------ESQEDVFV 504 (801)
Q Consensus 439 ~~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~-------~~~~~~f~fd~v~~~~-------~~~~~~~~ 504 (801)
++|+|++|+||....|...+...++.+++. .+.+.. ......|.||+||+++ ++|.+||+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~------~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~ 74 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGK------VTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFE 74 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCC------EEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHH
Confidence 479999999999988887777666666653 222222 2356789999999998 99999998
Q ss_pred HH-HHHHHHhhcCCceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccce
Q 003711 505 EI-SQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETI 583 (801)
Q Consensus 505 ~~-~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v 583 (801)
.+ .|+|+++++|+|+||||||+|||||||||+|++.++ |||||++++||+.+.........|.|++||||||||+|
T Consensus 75 ~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~---Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v 151 (356)
T cd01365 75 DLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEK---GIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKV 151 (356)
T ss_pred HHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCC---chHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCee
Confidence 74 689999999999999999999999999999988755 99999999999999876555789999999999999999
Q ss_pred ecccCCCccchhhhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEE
Q 003711 584 RDLLSTNRDASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLR 663 (801)
Q Consensus 584 ~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~ 663 (801)
+|||++... ....+.+++++.+++++.|++++.|.|.+++..+|..|.++|.+++|.+|..|||||+||+|+
T Consensus 152 ~DLL~~~~~--------~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~ 223 (356)
T cd01365 152 RDLLNPKKK--------NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIV 223 (356)
T ss_pred eeCCCCCcc--------CCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEE
Confidence 999998641 235788999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCC----CCceEEEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhccc-----CCCCCcccCC
Q 003711 664 ISGLNES----TEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKE-----KKEDHVPFRN 734 (801)
Q Consensus 664 i~~~~~~----~~~~~~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~-----~~~~~vp~r~ 734 (801)
|.+.... ......|+|+||||||+|+....+..+.+++|+..||+||++|++||.+|+... ++..|||||+
T Consensus 224 v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~ 303 (356)
T cd01365 224 LTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRD 303 (356)
T ss_pred EEEEecccCCCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcC
Confidence 9876543 456679999999999999999999999999999999999999999999998764 3468999999
Q ss_pred cccccccccccCCCccEEEEEecCCCCCCHHHHHHHHHHHHHhhhcccCCC
Q 003711 735 SKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAARVNACEIGTP 785 (801)
Q Consensus 735 s~LT~lL~~~l~g~s~~~~i~~isp~~~~~~etl~tL~fa~~~~~~~~~~~ 785 (801)
|+||+||+++|||+++|+||+||||...+++||++||+||.+++.|++.|.
T Consensus 304 SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~ 354 (356)
T cd01365 304 SVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAV 354 (356)
T ss_pred cHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccc
Confidence 999999999999999999999999999999999999999999999998764
No 11
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.4e-71 Score=616.79 Aligned_cols=334 Identities=38% Similarity=0.591 Sum_probs=290.0
Q ss_pred cCceeEEeeeCCCCCCCCCCCCCceEEcCCCcccccccee-eecCCceeEEEeceecCCCCChhhHHHH-HHHHHHHhhc
Q 003711 438 KGNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGID-IMQNGQKHSFSFDRVFMPDESQEDVFVE-ISQLVQSALD 515 (801)
Q Consensus 438 ~~~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~f~fd~v~~~~~~~~~~~~~-~~~~v~~~~~ 515 (801)
..+|.|.+|+||..+.+...+.........+..+...... .........|.||+||+++++|.+||+. ++|+|.+++.
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~ 84 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE 84 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence 3578999999999887443333222222222221111100 0000114789999999999999999976 8899999999
Q ss_pred CCceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCCCccchh
Q 003711 516 GYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASR 595 (801)
Q Consensus 516 G~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~~~ 595 (801)
|+|++|||||+|||||||||+|.+.+| ||||+++.+||+.|... ..+.|.|.|||+|||||.|+|||+++.
T Consensus 85 G~N~TVFAYG~TgSGKTyTM~G~~~~P---Gii~la~~dif~~I~~~--~~r~f~v~vSYlEIYNE~I~DLL~~~~---- 155 (675)
T KOG0242|consen 85 GFNATVFAYGQTGSGKTYTMSGSEDDP---GIIPLAMKDIFEKIDKS--GEREFSVRVSYLEIYNERIRDLLNPDG---- 155 (675)
T ss_pred CcccceeeecCCCCCCceEEeccCCCC---CeeehHHHHHHHHHHhc--CCceeEEEEEEEEEeccccccccCCCC----
Confidence 999999999999999999999999888 99999999999999884 388999999999999999999999854
Q ss_pred hhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeeccCCCCceE
Q 003711 596 LENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQQV 675 (801)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~~~~~~~~ 675 (801)
..+.+++|+.+++.|.|++...|.|.+++..+|..|..+|+++.|.+|..|||||+||+|.|......... .
T Consensus 156 -------~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~ 227 (675)
T KOG0242|consen 156 -------GDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-R 227 (675)
T ss_pred -------CCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-h
Confidence 55999999999999999999999999999999999999999999999999999999999999987755432 6
Q ss_pred EEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCcccccccccccCCCccEEEEE
Q 003711 676 QGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFV 755 (801)
Q Consensus 676 ~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~lL~~~l~g~s~~~~i~ 755 (801)
.++|+|||||||||+.+++..|.|++|+.+||+||.+||+||.+|+.+.. ..||||||||||||||++||||++|+|||
T Consensus 228 ~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~-~~hipYRDSKLTRiLq~sLgGn~rt~~I~ 306 (675)
T KOG0242|consen 228 VSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKR-PRHIPYRDSKLTRLLQDSLGGNARTAIIA 306 (675)
T ss_pred hheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccc-cCCCCccccHHHHhchhhcCCCccEEEEE
Confidence 78999999999999999999999999999999999999999999998632 34999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhhcccCCCcccc
Q 003711 756 NISPEASSVGESLCSLRFAARVNACEIGTPRRQT 789 (801)
Q Consensus 756 ~isp~~~~~~etl~tL~fa~~~~~~~~~~~~~~~ 789 (801)
||+|...+++||.+||.||+|++.|.+.....+.
T Consensus 307 tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~ 340 (675)
T KOG0242|consen 307 TISPSSSHYEETKNTLKFASRAKEITTKAQVNVI 340 (675)
T ss_pred EeCchhhHHHHHHHHHHHHHHhhhccccccccee
Confidence 9999999999999999999999999987755543
No 12
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=6.1e-70 Score=572.31 Aligned_cols=316 Identities=37% Similarity=0.531 Sum_probs=279.0
Q ss_pred CceeEEeeeCCCCCCCCCCCCCceEEcCCCccccc----cceeeecCCceeEEEeceecCCCCChhhHHHH-HHHHHHHh
Q 003711 439 GNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALG----RGIDIMQNGQKHSFSFDRVFMPDESQEDVFVE-ISQLVQSA 513 (801)
Q Consensus 439 ~~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~f~fd~v~~~~~~~~~~~~~-~~~~v~~~ 513 (801)
.+|+|++||||..+.|...+...++.++.+..+.. ...........+.|.||+||+++++|.+||+. +.|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 36899999999998887666555555555421100 00111111235789999999999999999987 67999999
Q ss_pred hcCCceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCCCccc
Q 003711 514 LDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDA 593 (801)
Q Consensus 514 ~~G~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~ 593 (801)
++|+|+||||||+|||||||||+|++.++ |||||++++||..+.... ..|.|++||||||+|.|+|||++.
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~---Glipr~~~~lf~~~~~~~---~~~~v~~S~~EIy~e~v~DLL~~~--- 151 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQE---GLYALAARDIFRLLAQPN---DDLGVTVSFFEIYGGKLFDLLNDR--- 151 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcC---ccHHHHHHHHHHHHhccc---cccEEEEEEEeeecCchhhhccCc---
Confidence 99999999999999999999999998665 999999999999987632 789999999999999999999862
Q ss_pred hhhhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeeccCCCCc
Q 003711 594 SRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQ 673 (801)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~~~~~~ 673 (801)
+++.+++++.+++++.|++++.|.|.+|+..+|..|..+|.+++|.+|..|||||+||+|+|.+.+. .
T Consensus 152 ---------~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~ 219 (322)
T cd01367 152 ---------KRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---N 219 (322)
T ss_pred ---------cceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---C
Confidence 5688999999999999999999999999999999999999999999999999999999999998765 5
Q ss_pred eEEEEEEEEecCCCccccCCC-CccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCcccccccccccCCCccEE
Q 003711 674 QVQGILNLIDLAGSERLSKSG-STGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTL 752 (801)
Q Consensus 674 ~~~~~l~~vDLagse~~~~~~-~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~lL~~~l~g~s~~~ 752 (801)
...|+|+||||||||+....+ ..+.+++|+.+||+||.+|++||.+|+.. ..|||||+|+||+||+|+|||||+|+
T Consensus 220 ~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~---~~~iPyRdSkLT~lL~~~L~g~~~t~ 296 (322)
T cd01367 220 KLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASN---KAHVPFRGSKLTQVLRDSFIGNSKTV 296 (322)
T ss_pred eeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcC---CCcCCCccCHHHHHHHHhhCCCCeEE
Confidence 678999999999999998765 46788999999999999999999999975 57999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhh
Q 003711 753 MFVNISPEASSVGESLCSLRFAARVN 778 (801)
Q Consensus 753 ~i~~isp~~~~~~etl~tL~fa~~~~ 778 (801)
||+||||...+++||++||+||.|++
T Consensus 297 ~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 297 MIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred EEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999975
No 13
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=2e-69 Score=572.14 Aligned_cols=323 Identities=42% Similarity=0.696 Sum_probs=295.9
Q ss_pred CceeEEeeeCCCCCCCCCCCCCceEEcCCCccccccceeeecCCceeEEEeceecCCCCChhhHHHH-HHHHHHHhhcCC
Q 003711 439 GNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDESQEDVFVE-ISQLVQSALDGY 517 (801)
Q Consensus 439 ~~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~fd~v~~~~~~~~~~~~~-~~~~v~~~~~G~ 517 (801)
.+|+|++|+||....|...+...++.++++. .+.+......+.|.||+||+++++|++||+. +.|+|+++++|+
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~-----~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~ 76 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGED-----TVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGY 76 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCC-----EEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 4799999999998877666666777776662 3444444667899999999999999999987 579999999999
Q ss_pred ceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCCCccchhhh
Q 003711 518 KVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLE 597 (801)
Q Consensus 518 n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~~~~~ 597 (801)
|+||||||+|||||||||+|++..+...|||||++++||+.+... ..+..|.|++||+|||+|.|+|||++..
T Consensus 77 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~-~~~~~~~v~~S~~EIy~e~v~DLL~~~~------ 149 (325)
T cd01369 77 NGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSM-DENLEFHVKVSYLEIYMEKIRDLLDVSK------ 149 (325)
T ss_pred cceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhc-cCCceEEEEEEEEEEECCChhhcccCcc------
Confidence 999999999999999999999886667799999999999999875 5677899999999999999999998753
Q ss_pred hccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeeccCCCCceEEE
Q 003711 598 NACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQQVQG 677 (801)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~~~~~~~~~~ 677 (801)
..+.++++..+++++.|++++.|.|.+++..+|..|..+|.+++|.+|..|||||+||+|+|.+.+........|
T Consensus 150 -----~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s 224 (325)
T cd01369 150 -----DNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRG 224 (325)
T ss_pred -----CCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEE
Confidence 567889999999999999999999999999999999999999999999999999999999999988877778899
Q ss_pred EEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCcccccccccccCCCccEEEEEec
Q 003711 678 ILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNI 757 (801)
Q Consensus 678 ~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~lL~~~l~g~s~~~~i~~i 757 (801)
+|+||||||+|+..+.+..+.+++|+..||+||++|++||.+|+.+. ..|||||+|+||+||+|+|||+|+|+||+||
T Consensus 225 ~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~--~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~v 302 (325)
T cd01369 225 KLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGK--STHIPYRDSKLTRILQDSLGGNSRTTLIICC 302 (325)
T ss_pred EEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCC--CCcCCCccCHHHHHHHHhcCCCCeEEEEEEe
Confidence 99999999999999999999999999999999999999999999752 3799999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhc
Q 003711 758 SPEASSVGESLCSLRFAARVNAC 780 (801)
Q Consensus 758 sp~~~~~~etl~tL~fa~~~~~~ 780 (801)
||...+++||++||+||.|++.|
T Consensus 303 sp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 303 SPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred CCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999865
No 14
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=3.2e-69 Score=572.18 Aligned_cols=328 Identities=65% Similarity=0.995 Sum_probs=300.6
Q ss_pred cCceeEEeeeCCCCCCCCCCCCCceEEcCCCccccccceeeecC-CceeEEEeceecCCCCChhhHHHHHHHHHHHhhcC
Q 003711 438 KGNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQN-GQKHSFSFDRVFMPDESQEDVFVEISQLVQSALDG 516 (801)
Q Consensus 438 ~~~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G 516 (801)
+++|+|++|+||....+. +....++.++..+ +..+.+... +..+.|.||+||+++++|.+||+.+.|+|+++++|
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~---~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G 76 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDED---GGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDG 76 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCC---ceEEEEeCCCCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCC
Confidence 478999999999988765 3344567776664 234444443 67889999999999999999999999999999999
Q ss_pred CceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCCCccchhh
Q 003711 517 YKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRL 596 (801)
Q Consensus 517 ~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~~~~ 596 (801)
+|+||||||+|||||||||+|++.++ |||||++++||..+......++.|.|++||+|||+|+|+|||.+...
T Consensus 77 ~~~~i~ayG~tgSGKT~tl~G~~~~~---Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~---- 149 (329)
T cd01366 77 YNVCIFAYGQTGSGKTYTMEGPPENP---GIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPA---- 149 (329)
T ss_pred CceEEEEeCCCCCCCcEEecCCCCCC---CcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcC----
Confidence 99999999999999999999998665 99999999999999887666899999999999999999999998641
Q ss_pred hhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeeccCCCCceEE
Q 003711 597 ENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQQVQ 676 (801)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~~~~~~~~~ 676 (801)
...++.+++++.+++++.|++++.|.|++|+..+|..|..+|.++.|.+|..|||||+||+|+|.+.+........
T Consensus 150 ----~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~ 225 (329)
T cd01366 150 ----PKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTR 225 (329)
T ss_pred ----CCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEE
Confidence 3478999999999999999999999999999999999999999999999999999999999999998888788899
Q ss_pred EEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCcccccccccccCCCccEEEEEe
Q 003711 677 GILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVN 756 (801)
Q Consensus 677 ~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~lL~~~l~g~s~~~~i~~ 756 (801)
|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+|+.+ ..|||||+|+||+||+|+|||+++|+||+|
T Consensus 226 s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~---~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~ 302 (329)
T cd01366 226 GKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK---DSHVPYRNSKLTYLLQDSLGGNSKTLMFVN 302 (329)
T ss_pred EEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC---CCcCCCcccHhHHHHHHhcCCCceEEEEEE
Confidence 99999999999999999999999999999999999999999999975 789999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhhcccC
Q 003711 757 ISPEASSVGESLCSLRFAARVNACEIG 783 (801)
Q Consensus 757 isp~~~~~~etl~tL~fa~~~~~~~~~ 783 (801)
|||...+++||++||+||.+++.|++|
T Consensus 303 vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 303 ISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred eCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 999999999999999999999999875
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=2.7e-69 Score=570.96 Aligned_cols=324 Identities=43% Similarity=0.670 Sum_probs=287.5
Q ss_pred CceeEEeeeCCCCCCCCCCCCCceEEcCCCccccccceeeec-----CCceeEEEeceecCCCCChhhHHHH-HHHHHHH
Q 003711 439 GNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQ-----NGQKHSFSFDRVFMPDESQEDVFVE-ISQLVQS 512 (801)
Q Consensus 439 ~~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~f~fd~v~~~~~~~~~~~~~-~~~~v~~ 512 (801)
.+|+|++|+||..+.|...+...++..+.... .+.+.. ....+.|.||+||+++++|.+||+. +.|+|++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~ 76 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRG----QVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDS 76 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCC----EEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHH
Confidence 36899999999988877665554555433221 222211 2467889999999999999999977 6799999
Q ss_pred hhcCCceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCCCcc
Q 003711 513 ALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRD 592 (801)
Q Consensus 513 ~~~G~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~ 592 (801)
+++|+|+||||||+|||||||||+|++..+...|||||++++||..+... ....|.|++||+|||+|.|+|||.++.
T Consensus 77 ~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~~v~~S~~Eiy~e~v~DLL~~~~- 153 (333)
T cd01371 77 VLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKA--ENVQFLVRVSYLEIYNEEVRDLLGKDQ- 153 (333)
T ss_pred HhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhc--cCccEEEEEEEEEeeCCeeeeCCCCCC-
Confidence 99999999999999999999999999876667799999999999998773 347899999999999999999998753
Q ss_pred chhhhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeeccCC--
Q 003711 593 ASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNES-- 670 (801)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~~~-- 670 (801)
...+.+++++.+++++.|++++.|.|.+++..+|..|..+|.++.|.+|..|||||+||+|+|.+.+..
T Consensus 154 ---------~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~ 224 (333)
T cd01371 154 ---------KKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGED 224 (333)
T ss_pred ---------CCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCC
Confidence 257889999999999999999999999999999999999999999999999999999999999887653
Q ss_pred -CCceEEEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCcccccccccccCCCc
Q 003711 671 -TEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDS 749 (801)
Q Consensus 671 -~~~~~~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~lL~~~l~g~s 749 (801)
......|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+|+.. +..|||||+|+||+||+++|||+|
T Consensus 225 ~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~--~~~~ipyR~SkLT~lL~~~l~g~s 302 (333)
T cd01371 225 GENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDG--KSTHIPYRDSKLTRLLQDSLGGNS 302 (333)
T ss_pred CCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhC--CCCcCCCccCHHHHHHHHhcCCCc
Confidence 44566899999999999999999999999999999999999999999999975 345999999999999999999999
Q ss_pred cEEEEEecCCCCCCHHHHHHHHHHHHHhhhc
Q 003711 750 KTLMFVNISPEASSVGESLCSLRFAARVNAC 780 (801)
Q Consensus 750 ~~~~i~~isp~~~~~~etl~tL~fa~~~~~~ 780 (801)
+|+||+||||...+++||++||+||.|++.|
T Consensus 303 ~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 303 KTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred eEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999865
No 16
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=4.5e-69 Score=575.21 Aligned_cols=332 Identities=37% Similarity=0.583 Sum_probs=295.3
Q ss_pred CceeEEeeeCCCCCCCCCCCCCceEEcCCCccccccceeeecC----CceeEEEeceecCCCCChhhHHHH-HHHHHHHh
Q 003711 439 GNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQN----GQKHSFSFDRVFMPDESQEDVFVE-ISQLVQSA 513 (801)
Q Consensus 439 ~~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~f~fd~v~~~~~~~~~~~~~-~~~~v~~~ 513 (801)
.+|+|++|+||....|...+...++..+.+. ..|.+... .....|.||+||+++++|.+||+. +.|+|+++
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~----~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~ 77 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSS----KEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEV 77 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCC----cEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5799999999998888766666667776652 23333332 257899999999999999999987 67999999
Q ss_pred hcCCceEEEeeccCCcccceeeccCCCC--------CCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceec
Q 003711 514 LDGYKVCIFAYGQTGSGKTYTMMGKPGH--------PDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRD 585 (801)
Q Consensus 514 ~~G~n~~v~~yG~tgsGKt~tl~G~~~~--------~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~D 585 (801)
++|+|+||||||+|||||||||+|+... +...|||||++.+||+.+... ...|.|++||+|||+|+|+|
T Consensus 78 ~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~D 154 (352)
T cd01364 78 LMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ---NTEYSVKVSYLELYNEELFD 154 (352)
T ss_pred hCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc---cceeEEEEEEEEeeCCeeee
Confidence 9999999999999999999999998755 345799999999999998763 67899999999999999999
Q ss_pred ccCCCccchhhhhccCCCceEEEeC--CCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEE
Q 003711 586 LLSTNRDASRLENACNGKQYAIKHD--ASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLR 663 (801)
Q Consensus 586 LL~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~ 663 (801)
||++... ...++.++++ ..+++++.|++++.|.|.+++..+|..|..+|.+++|.+|..|||||+||+|.
T Consensus 155 LL~~~~~--------~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~ 226 (352)
T cd01364 155 LLSSESD--------LNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSIT 226 (352)
T ss_pred CCCCccc--------cCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEE
Confidence 9997641 2367889999 58999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCC---CCceEEEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCcccccc
Q 003711 664 ISGLNES---TEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYL 740 (801)
Q Consensus 664 i~~~~~~---~~~~~~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~l 740 (801)
|.+.... ......|+|+||||||+|+..+.+..+.+++|+..||+||++|++||.+|+.+ ..|||||+|+||+|
T Consensus 227 i~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~---~~~vpyR~S~LT~l 303 (352)
T cd01364 227 IHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEK---SPHIPYRESKLTRL 303 (352)
T ss_pred EEEeccCCCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcC---CCCCCCcccHHHHH
Confidence 9876543 23456799999999999999999999999999999999999999999999975 57999999999999
Q ss_pred cccccCCCccEEEEEecCCCCCCHHHHHHHHHHHHHhhhcccCCCccc
Q 003711 741 LQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAARVNACEIGTPRRQ 788 (801)
Q Consensus 741 L~~~l~g~s~~~~i~~isp~~~~~~etl~tL~fa~~~~~~~~~~~~~~ 788 (801)
|+|+|||||+|+||+||||...+++||++||+||.+++.|++.|..+|
T Consensus 304 L~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 304 LQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred HHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 999999999999999999999999999999999999999999886554
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=5.2e-69 Score=565.25 Aligned_cols=315 Identities=39% Similarity=0.635 Sum_probs=279.5
Q ss_pred ceeEEeeeCCCCCCCCCCCCCceEEcCCCccccccceeeec---CCceeEEEeceecCCCCChhhHHHH-HHHHHHHhhc
Q 003711 440 NIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQ---NGQKHSFSFDRVFMPDESQEDVFVE-ISQLVQSALD 515 (801)
Q Consensus 440 ~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~f~fd~v~~~~~~~~~~~~~-~~~~v~~~~~ 515 (801)
+|+|++||||....|... ..++...+.+......+.+.. ....+.|.||+||+++++|.+||+. +.|+|+.+++
T Consensus 1 ~i~V~vRvRP~~~~e~~~--~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDS--SSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred CcEEEEEeCcCCccccCC--CceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 478999999998776432 233444333222223344433 2356899999999999999999987 7899999999
Q ss_pred CCceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCCCccchh
Q 003711 516 GYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASR 595 (801)
Q Consensus 516 G~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~~~ 595 (801)
|+|+||||||+|||||||||+|++.++ |||||++++||+.+.. ..+.|.|++||+|||+|.|+|||++..
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~~~~~---Glipr~~~~Lf~~~~~---~~~~~~v~~S~~EIy~e~v~DLL~~~~---- 148 (319)
T cd01376 79 GQNATVFAYGSTGAGKTHTMLGDPNEP---GLIPRTLSDLLRMGRK---QAWTGAFSMSYYEIYNEKVYDLLEPAK---- 148 (319)
T ss_pred CCceEEEEECCCCCCCcEEEeCCcCcc---chHHHHHHHHHHHHhh---ccccceEEEEEEEEECCEeeEccCCCC----
Confidence 999999999999999999999988755 9999999999998765 347899999999999999999998752
Q ss_pred hhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeeccCCCCceE
Q 003711 596 LENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQQV 675 (801)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~~~~~~~~ 675 (801)
..+.+++++.+++++.|++++.|.|.+++..++..|..+|..++|.+|..|||||+||+|+|.+.+.. ...
T Consensus 149 -------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~--~~~ 219 (319)
T cd01376 149 -------KELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN--IQL 219 (319)
T ss_pred -------CCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC--ceE
Confidence 56789999999999999999999999999999999999999999999999999999999999887643 367
Q ss_pred EEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCcccccccccccCCCccEEEEE
Q 003711 676 QGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFV 755 (801)
Q Consensus 676 ~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~lL~~~l~g~s~~~~i~ 755 (801)
.|+|+||||||||+....+..|.+++|+..||+||++|++||.+|+.+ ..|||||+|+||+||+|+|||+|+|+||+
T Consensus 220 ~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~---~~~ipyr~S~LT~lL~~~L~g~s~t~~i~ 296 (319)
T cd01376 220 EGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKG---LPRIPYRESKLTRLLQDSLGGGSRCIMVA 296 (319)
T ss_pred EEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcC---CCcCCCccCHHHHHHHHhcCCCccEEEEE
Confidence 899999999999999999999999999999999999999999999875 57999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhh
Q 003711 756 NISPEASSVGESLCSLRFAARVN 778 (801)
Q Consensus 756 ~isp~~~~~~etl~tL~fa~~~~ 778 (801)
||||...+++||++||+||.|++
T Consensus 297 ~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 297 NIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred EeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999975
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=2.9e-68 Score=561.52 Aligned_cols=317 Identities=42% Similarity=0.650 Sum_probs=284.7
Q ss_pred ceeEEeeeCCCCCCCCCCCCCceEEcCCCccccccceeeecCCceeEEEeceecCCCCChhhHHHH-HHHHHHHhhcCCc
Q 003711 440 NIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDESQEDVFVE-ISQLVQSALDGYK 518 (801)
Q Consensus 440 ~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~fd~v~~~~~~~~~~~~~-~~~~v~~~~~G~n 518 (801)
+|+|++|+||....|.. +...++.++.+ ..+-+........|.||+||+++++|.+||+. +.|+|+++++|+|
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~-----~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n 74 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDND-----NTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYN 74 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCC-----CEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCc
Confidence 58999999999887763 33444555544 12333334567999999999999999999987 5799999999999
Q ss_pred eEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCCCccchhhhh
Q 003711 519 VCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLEN 598 (801)
Q Consensus 519 ~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~~~~~~ 598 (801)
+||||||+|||||||||+|++.++ |||||++++||..+.. ..+..|.|++||+|||||.|+|||.+..
T Consensus 75 ~~i~ayG~tgSGKT~T~~G~~~~~---Gli~r~~~~lf~~~~~--~~~~~~~v~~S~~Eiy~e~v~DLL~~~~------- 142 (321)
T cd01374 75 GTIFAYGQTSSGKTFTMSGDEQEP---GIIPLAVRDIFQRIQD--TPDREFLLRVSYLEIYNEKIKDLLSPSP------- 142 (321)
T ss_pred eeEEeecCCCCCCceeccCCCCCC---chHHHHHHHHHHHHhc--ccCceEEEEEEEEEEEcCEeEEccCCCC-------
Confidence 999999999999999999988655 9999999999999876 3467899999999999999999998854
Q ss_pred ccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeeccCCC---CceE
Q 003711 599 ACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNEST---EQQV 675 (801)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~~~~---~~~~ 675 (801)
..+.+++++.+++++.|++++.|.|++++..+|..|..+|..++|.+|..|||||+||+|+|.+.+... ....
T Consensus 143 ----~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~ 218 (321)
T cd01374 143 ----QELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVR 218 (321)
T ss_pred ----CCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEE
Confidence 568899999999999999999999999999999999999999999999999999999999999877654 5677
Q ss_pred EEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCcccccccccccCCCccEEEEE
Q 003711 676 QGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFV 755 (801)
Q Consensus 676 ~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~lL~~~l~g~s~~~~i~ 755 (801)
.|+|+||||||+|+....+ .+.+++|+..||+||++|++||.+|+.... ..|||||+|+||+||+|+|||+|+|+||+
T Consensus 219 ~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~-~~~vpyR~SkLT~lL~~~L~g~s~t~~i~ 296 (321)
T cd01374 219 VSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKN-SGHIPYRDSKLTRILQPSLSGNARTAIIC 296 (321)
T ss_pred EEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCC-CCcCCCcCCHHHHHHHHhcCCCceEEEEE
Confidence 8999999999999999998 889999999999999999999999998632 58999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhhc
Q 003711 756 NISPEASSVGESLCSLRFAARVNAC 780 (801)
Q Consensus 756 ~isp~~~~~~etl~tL~fa~~~~~~ 780 (801)
||||...+++||++||+||.|++.|
T Consensus 297 ~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 297 TISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred EeCCccccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999864
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=4.3e-68 Score=566.45 Aligned_cols=326 Identities=41% Similarity=0.650 Sum_probs=289.2
Q ss_pred ceeEEeeeCCCCCCCCCCCCCceEEcCCCccccccceeeecCCceeEEEeceecCCCCChhhHHHH-HHHHHHHhhcCCc
Q 003711 440 NIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDESQEDVFVE-ISQLVQSALDGYK 518 (801)
Q Consensus 440 ~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~fd~v~~~~~~~~~~~~~-~~~~v~~~~~G~n 518 (801)
.|+|++|+||....|..++....+.+.... ..+.+ +..+.|.||+||+++++|++||+. +.|+|+++++|+|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~----~~v~~---~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n 74 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGE----PQVTV---GTDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYN 74 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCC----CEEEe---cCCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 489999999998888776655555443332 11111 226789999999999999999987 5699999999999
Q ss_pred eEEEeeccCCcccceeeccCCCC---CCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCCCccchh
Q 003711 519 VCIFAYGQTGSGKTYTMMGKPGH---PDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASR 595 (801)
Q Consensus 519 ~~v~~yG~tgsGKt~tl~G~~~~---~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~~~ 595 (801)
+||||||+|||||||||+|+... ....|||||++++||..+... .....|.|++||+|||||+|+|||.+...
T Consensus 75 ~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~-~~~~~~~v~vS~~EIy~e~v~DLL~~~~~--- 150 (341)
T cd01372 75 ATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEK-KDEPDFQLKVSFLELYNEEVRDLLSPSTS--- 150 (341)
T ss_pred cceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhc-cccceEEEEEEEEEeECCeeecCCCCccc---
Confidence 99999999999999999998642 445799999999999999874 44578999999999999999999987641
Q ss_pred hhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeeccCC-----
Q 003711 596 LENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNES----- 670 (801)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~~~----- 670 (801)
....+.+++++.+++++.|++++.|.|.+++..+|..|..+|..++|.+|..|||||+||+|+|.+.+..
T Consensus 151 -----~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~ 225 (341)
T cd01372 151 -----EKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAP 225 (341)
T ss_pred -----CCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcccc
Confidence 2367899999999999999999999999999999999999999999999999999999999999987763
Q ss_pred -----CCceEEEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCccccccccccc
Q 003711 671 -----TEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCL 745 (801)
Q Consensus 671 -----~~~~~~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~lL~~~l 745 (801)
......|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+|+.+.++..|||||+|+||+||+|+|
T Consensus 226 ~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~L 305 (341)
T cd01372 226 MSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSL 305 (341)
T ss_pred ccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhc
Confidence 445678999999999999999999999999999999999999999999999875556899999999999999999
Q ss_pred CCCccEEEEEecCCCCCCHHHHHHHHHHHHHhhhcc
Q 003711 746 GGDSKTLMFVNISPEASSVGESLCSLRFAARVNACE 781 (801)
Q Consensus 746 ~g~s~~~~i~~isp~~~~~~etl~tL~fa~~~~~~~ 781 (801)
||+++|+||+||||...+++||++||+||.|++.|+
T Consensus 306 gg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 306 GGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred CCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999875
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1e-67 Score=558.42 Aligned_cols=325 Identities=43% Similarity=0.612 Sum_probs=281.0
Q ss_pred ceeEEeeeCCCCCCCCCCCCCceEEcCCCccc----ccc-cee-eecCCceeEEEeceecCCCCChhhHHHHH-HHHHHH
Q 003711 440 NIRVFCRVRPLLPDDSSGSEGKLISYPTTTEA----LGR-GID-IMQNGQKHSFSFDRVFMPDESQEDVFVEI-SQLVQS 512 (801)
Q Consensus 440 ~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~----~~~-~i~-~~~~~~~~~f~fd~v~~~~~~~~~~~~~~-~~~v~~ 512 (801)
.|+|++|+||....+.. .+...++...+ .+. ... +.+....+.|.||+||++ ++|++||+.+ .|+|++
T Consensus 1 ~i~V~vRvRP~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~ 75 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS----SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDS 75 (334)
T ss_pred CeEEEEECCCCCCCCCc----cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHH
Confidence 37899999998763332 22333332210 000 111 122345678999999999 9999999875 589999
Q ss_pred hhcCCceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCCCcc
Q 003711 513 ALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRD 592 (801)
Q Consensus 513 ~~~G~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~ 592 (801)
+++|+|+||||||+|||||||||+|+..+....|||||++++||..+.. ..+..|.|++||||||||+|+|||++...
T Consensus 76 ~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~--~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~ 153 (334)
T cd01375 76 ALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAM--RATKTYTVHVSYLEIYNEQLYDLLGDTPE 153 (334)
T ss_pred HhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHh--ccCcceEEEEEEEEEECCEeecCCCCCcc
Confidence 9999999999999999999999999876555679999999999999876 45778999999999999999999998753
Q ss_pred chhhhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeec--cCC
Q 003711 593 ASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGL--NES 670 (801)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~--~~~ 670 (801)
. ....+.+.+++++.+++++.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+. ...
T Consensus 154 ~-----~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~ 228 (334)
T cd01375 154 A-----LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAG 228 (334)
T ss_pred c-----cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCC
Confidence 2 112367889999999999999999999999999999999999999999999999999999999999987 455
Q ss_pred CCceEEEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCcccccccccccCCCcc
Q 003711 671 TEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSK 750 (801)
Q Consensus 671 ~~~~~~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~lL~~~l~g~s~ 750 (801)
......|+|+||||||||+..+.+..+..++|+..||+||.+|++||.+|+.+. ..|||||+|+||+||+|+|||+|+
T Consensus 229 ~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~--~~~ipyRdSkLT~lL~d~Lgg~~~ 306 (334)
T cd01375 229 SEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA--RTHVPYRNSKLTHVLRDSLGGNCK 306 (334)
T ss_pred CCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCC--CCCCCCcccHHHHHHHHhcCCCce
Confidence 566788999999999999999999999999999999999999999999999762 479999999999999999999999
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHhh
Q 003711 751 TLMFVNISPEASSVGESLCSLRFAARVN 778 (801)
Q Consensus 751 ~~~i~~isp~~~~~~etl~tL~fa~~~~ 778 (801)
|+||+||||...+++||++||+||.|++
T Consensus 307 t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 307 TVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999974
No 21
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-68 Score=567.73 Aligned_cols=335 Identities=37% Similarity=0.599 Sum_probs=294.9
Q ss_pred cCceeEEeeeCCCCCCCCCCCCCceEEcCCCcccccc---ceeeecCCceeEEEeceecCCC-------CChhhHHHHHH
Q 003711 438 KGNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGR---GIDIMQNGQKHSFSFDRVFMPD-------ESQEDVFVEIS 507 (801)
Q Consensus 438 ~~~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~f~fd~v~~~~-------~~~~~~~~~~~ 507 (801)
..+++|.+||||++..|.+....-++.+.....+... .-.+-..+..+.|.||+||++- +.|+.||+.+.
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 3689999999999999887665444444332221100 0011223667899999999875 46999999887
Q ss_pred H-HHHHhhcCCceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecc
Q 003711 508 Q-LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDL 586 (801)
Q Consensus 508 ~-~v~~~~~G~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DL 586 (801)
+ +|+++|+|||+||||||||||||||||+|..+.| |||||.+..||..|.........|.|.|||+|||||+|+||
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~Qp---GiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DL 159 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQP---GIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDL 159 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCC---CchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhh
Confidence 5 8999999999999999999999999999998877 99999999999999998888999999999999999999999
Q ss_pred cCCCccchhhhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEee
Q 003711 587 LSTNRDASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISG 666 (801)
Q Consensus 587 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~ 666 (801)
|+|..+ .+.+.++++.--|+++.||+...|+|.+++..+|..|.++|+++.|+||..|||||+||.|-|.+
T Consensus 160 LdPk~s---------sqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ 230 (1714)
T KOG0241|consen 160 LDPKGS---------SQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQ 230 (1714)
T ss_pred hCCCCC---------cceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEee
Confidence 999864 37789999999999999999999999999999999999999999999999999999999999876
Q ss_pred cc----CCCCceEEEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhccc---CCCCCcccCCccccc
Q 003711 667 LN----ESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKE---KKEDHVPFRNSKLTY 739 (801)
Q Consensus 667 ~~----~~~~~~~~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~---~~~~~vp~r~s~LT~ 739 (801)
.- ........|+|.+|||||++|+.+.++.|.+++|+.+||+||++||.||.+|+... .++.+||||||.||+
T Consensus 231 ~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTw 310 (1714)
T KOG0241|consen 231 TLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTW 310 (1714)
T ss_pred EEeccccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHH
Confidence 43 23345568999999999999999999999999999999999999999999999753 235699999999999
Q ss_pred ccccccCCCccEEEEEecCCCCCCHHHHHHHHHHHHHhhhcccCC
Q 003711 740 LLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAARVNACEIGT 784 (801)
Q Consensus 740 lL~~~l~g~s~~~~i~~isp~~~~~~etl~tL~fa~~~~~~~~~~ 784 (801)
||+|.|||||+|+||+||||++.+|+|||+|||||+|++.|++..
T Consensus 311 LLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~a 355 (1714)
T KOG0241|consen 311 LLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHA 355 (1714)
T ss_pred HHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999865
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=3.9e-65 Score=543.53 Aligned_cols=328 Identities=48% Similarity=0.763 Sum_probs=295.5
Q ss_pred ceeEEeeeCCCCCCCCCCCCCceEEcCCCccccccceeee---cCCceeEEEeceecCCCCChhhHHHH-HHHHHHHhhc
Q 003711 440 NIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIM---QNGQKHSFSFDRVFMPDESQEDVFVE-ISQLVQSALD 515 (801)
Q Consensus 440 ~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~f~fd~v~~~~~~~~~~~~~-~~~~v~~~~~ 515 (801)
.|+|++|+||....|...+...++.++..+. ..+.+. ..++...|.||+||+++++|.+||+. +.|+|+.+++
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~ 77 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDG---KTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLE 77 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCC---CEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhc
Confidence 4789999999988877666656666665532 122221 23667899999999999999999987 5699999999
Q ss_pred CCceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCCCccchh
Q 003711 516 GYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASR 595 (801)
Q Consensus 516 G~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~~~ 595 (801)
|+|+|||+||+|||||||||+|++.++ ||||+++++||..+... ..+..|.|++||+|||+|.|+|||++.+
T Consensus 78 G~~~~i~~yG~tgSGKT~tl~G~~~~~---Gli~~~~~~Lf~~~~~~-~~~~~~~v~~S~~ei~~e~v~DLL~~~~---- 149 (335)
T smart00129 78 GYNATIFAYGQTGSGKTYTMSGTPDSP---GIIPRALKDLFEKIDKL-EEGWQFQVKVSYLEIYNEKIRDLLNPSP---- 149 (335)
T ss_pred CCceeEEEeCCCCCCCceEecCCCCCC---CHHHHHHHHHHHHhhhc-ccCceEEEEEEEEEEECCEEEECcCCCC----
Confidence 999999999999999999999987655 99999999999998764 3467899999999999999999998753
Q ss_pred hhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeec--cCCCCc
Q 003711 596 LENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGL--NESTEQ 673 (801)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~--~~~~~~ 673 (801)
..+.+++++.+++++.|++++.|.|.+++.++|..|..+|.+++|.+|..|||||+||+|+|.+. +.....
T Consensus 150 -------~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~ 222 (335)
T smart00129 150 -------KKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGS 222 (335)
T ss_pred -------CCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999966 666777
Q ss_pred eEEEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCcccccccccccCCCccEEE
Q 003711 674 QVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLM 753 (801)
Q Consensus 674 ~~~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~lL~~~l~g~s~~~~ 753 (801)
...|+|+||||||+|+....+..+.+++|+..||+||.+|++||.+|+.. .+..|+|||+|+||+||+++|||+++|+|
T Consensus 223 ~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~-~~~~~ip~r~S~LT~lL~~~L~g~~~~~~ 301 (335)
T smart00129 223 GKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADG-QKSRHIPYRDSKLTRLLQDSLGGNSKTLM 301 (335)
T ss_pred EEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhc-CCCCCCCCcCcHhHHHHHHHcCCCCeEEE
Confidence 88999999999999999999999999999999999999999999999974 24779999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHhhhcccCCCc
Q 003711 754 FVNISPEASSVGESLCSLRFAARVNACEIGTPR 786 (801)
Q Consensus 754 i~~isp~~~~~~etl~tL~fa~~~~~~~~~~~~ 786 (801)
|+||||...+++||++||+||.+++.|++.|+.
T Consensus 302 i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~ 334 (335)
T smart00129 302 IANISPSLSNLEETLSTLRFASRAKEIKNKAIV 334 (335)
T ss_pred EEEcCCCccchHHHHHHHHHHHHHhhcccCCCc
Confidence 999999999999999999999999999998864
No 23
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=4.5e-65 Score=544.11 Aligned_cols=326 Identities=44% Similarity=0.697 Sum_probs=278.5
Q ss_pred eeCCCCCCCCCCCCCceEEcCCCccc-cccceeeecCCceeEEEeceecCCCCChhhHHHH-HHHHHHHhhcCCceEEEe
Q 003711 446 RVRPLLPDDSSGSEGKLISYPTTTEA-LGRGIDIMQNGQKHSFSFDRVFMPDESQEDVFVE-ISQLVQSALDGYKVCIFA 523 (801)
Q Consensus 446 r~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~f~fd~v~~~~~~~~~~~~~-~~~~v~~~~~G~n~~v~~ 523 (801)
||||....|...+....+.++..... ...............|.||+||+++++|.+||+. +.|+|+++++|+|+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 78888887777666555554431110 0011122335678899999999999999999987 589999999999999999
Q ss_pred eccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhc-CCeeeEEEEEEEEEccceecccCCCccchhhhhccCC
Q 003711 524 YGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQ-GWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNG 602 (801)
Q Consensus 524 yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~-~~~~~v~~S~~ei~~e~v~DLL~~~~~~~~~~~~~~~ 602 (801)
||+|||||||||+|+ ..+...|||||++++||..+...... ++.|.|+|||+|||+|+|+|||.+.... ..
T Consensus 81 yG~tgSGKT~Tm~G~-~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~-------~~ 152 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGS-NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSK-------SR 152 (335)
T ss_dssp EESTTSSHHHHHTBS-TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSS-------TT
T ss_pred ecccccccccccccc-ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccc-------cc
Confidence 999999999999998 12234599999999999999875333 5799999999999999999999987411 23
Q ss_pred CceEEEeCCCCC-eEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeeccCCCCc----eEEE
Q 003711 603 KQYAIKHDASGN-THVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQ----QVQG 677 (801)
Q Consensus 603 ~~~~~~~~~~~~-~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~~~~~~----~~~~ 677 (801)
.++.+++++..+ +++.|++++.|.|.+++..+|..|..+|.+..+.+|..|||||+||+|+|.+.+..... ...|
T Consensus 153 ~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s 232 (335)
T PF00225_consen 153 KPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHS 232 (335)
T ss_dssp SEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEE
T ss_pred cccceeeccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeec
Confidence 578999999865 99999999999999999999999999999999999999999999999999988766554 4789
Q ss_pred EEEEEecCCCccccCCCCc-cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCcccccccccccCCCccEEEEEe
Q 003711 678 ILNLIDLAGSERLSKSGST-GDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVN 756 (801)
Q Consensus 678 ~l~~vDLagse~~~~~~~~-~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~lL~~~l~g~s~~~~i~~ 756 (801)
+|+||||||+|+..+.+.. +.+.+|+..||+||.+|++||.+|+.+ ....|||||+|+||+||+|+|||+|+|+||+|
T Consensus 233 ~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~-~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~ 311 (335)
T PF00225_consen 233 RLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQG-SKQSHVPYRDSKLTRLLKDSLGGNSKTILIVC 311 (335)
T ss_dssp EEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT-TSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEE
T ss_pred ceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhcc-ccchhhhhhcccccceecccccccccceeEEE
Confidence 9999999999999988864 778999999999999999999999986 34789999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhhc
Q 003711 757 ISPEASSVGESLCSLRFAARVNAC 780 (801)
Q Consensus 757 isp~~~~~~etl~tL~fa~~~~~~ 780 (801)
|||...++++|++||+||.+++.|
T Consensus 312 vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 312 VSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp E-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred cCCccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999875
No 24
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.3e-63 Score=531.14 Aligned_cols=320 Identities=46% Similarity=0.726 Sum_probs=284.0
Q ss_pred ceeEEeeeCCCCCCCCCCCCCceEEcCCCccccccceeeec-----CCceeEEEeceecCCCCChhhHHHHH-HHHHHHh
Q 003711 440 NIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALGRGIDIMQ-----NGQKHSFSFDRVFMPDESQEDVFVEI-SQLVQSA 513 (801)
Q Consensus 440 ~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~f~fd~v~~~~~~~~~~~~~~-~~~v~~~ 513 (801)
+|+|++|+||....+..+. ..++.++.. ..+.+.. ....+.|.||+||+++++|.+||+.+ .|+|+++
T Consensus 1 ~i~V~vRvrP~~~~~~~~~-~~~~~~~~~-----~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~ 74 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSE-ESCITVDDN-----KTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESV 74 (328)
T ss_pred CeEEEEEcCCCCcccccCC-CcEEEECCC-----CEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHH
Confidence 4899999999987663333 234444443 2233322 23478999999999999999999875 5999999
Q ss_pred hcCCceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCCCccc
Q 003711 514 LDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDA 593 (801)
Q Consensus 514 ~~G~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~ 593 (801)
++|+|+|||+||+|||||||||+|++.++ ||||+++++||..+.........|.|++||+|||+|+|+|||.+..
T Consensus 75 ~~G~~~~i~~yG~tgSGKT~tl~G~~~~~---Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~-- 149 (328)
T cd00106 75 LEGYNGTIFAYGQTGSGKTYTMFGSPKDP---GIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP-- 149 (328)
T ss_pred hCCCceeEEEecCCCCCCeEEecCCCCCC---chHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC--
Confidence 99999999999999999999999998665 9999999999999887544467899999999999999999999863
Q ss_pred hhhhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeeccCCCCc
Q 003711 594 SRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQ 673 (801)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~~~~~~ 673 (801)
...++.+++++.+++++.|++++.|.|.+++..+|..|..+|.++.|.+|..|||||+||+|+|...+.....
T Consensus 150 -------~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~ 222 (328)
T cd00106 150 -------PSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDG 222 (328)
T ss_pred -------CCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCC
Confidence 2367889999999999999999999999999999999999999999999999999999999999988776554
Q ss_pred --eEEEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCcccccccccccCCCccE
Q 003711 674 --QVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKT 751 (801)
Q Consensus 674 --~~~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~lL~~~l~g~s~~ 751 (801)
...|+|+||||||+|+....+..+.++.|+..||+||.+|++||.+|+.... ..|||||+|+||+||+|+|||+++|
T Consensus 223 ~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~-~~~ip~r~SkLT~lL~~~l~g~~~t 301 (328)
T cd00106 223 RSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQK-KKHIPYRDSKLTRLLQDSLGGNSKT 301 (328)
T ss_pred ccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCC-CCcCCCcCcHHHHHHHHhcCCCCeE
Confidence 7899999999999999999888999999999999999999999999998631 4899999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhh
Q 003711 752 LMFVNISPEASSVGESLCSLRFAARVN 778 (801)
Q Consensus 752 ~~i~~isp~~~~~~etl~tL~fa~~~~ 778 (801)
+||+||||...+++||++||+||.|++
T Consensus 302 ~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 302 LMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999974
No 25
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-63 Score=511.33 Aligned_cols=330 Identities=33% Similarity=0.482 Sum_probs=288.6
Q ss_pred cCceeEEeeeCCCCCCCCCCCCCceEEcCCCcccc----ccceeeecCCceeEEEeceecCCCCChhhHHH-HHHHHHHH
Q 003711 438 KGNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEAL----GRGIDIMQNGQKHSFSFDRVFMPDESQEDVFV-EISQLVQS 512 (801)
Q Consensus 438 ~~~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~f~fd~v~~~~~~~~~~~~-~~~~~v~~ 512 (801)
..+|-|-+|-||++..|...-+--+|.+|..+... ...+++..=-+.+.|.||.+||+.++++.||. ++.|||..
T Consensus 207 ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~ 286 (676)
T KOG0246|consen 207 EHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKT 286 (676)
T ss_pred cceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHH
Confidence 45688999999999999888888888888775431 12233333345689999999999999999996 57899999
Q ss_pred hhcCCceEEEeeccCCcccceeeccCCC---CCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCC
Q 003711 513 ALDGYKVCIFAYGQTGSGKTYTMMGKPG---HPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLST 589 (801)
Q Consensus 513 ~~~G~n~~v~~yG~tgsGKt~tl~G~~~---~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~ 589 (801)
+|+|--+|+||||||||||||||-|+.. .....||...+.+|+|..+..-.=....+.|++||||||+++|||||+.
T Consensus 287 IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~ 366 (676)
T KOG0246|consen 287 IFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND 366 (676)
T ss_pred HHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc
Confidence 9999999999999999999999977643 2345799999999999987653334567899999999999999999986
Q ss_pred CccchhhhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeeccC
Q 003711 590 NRDASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNE 669 (801)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~~ 669 (801)
. +.+.+++|.++.++|.||.+..|.+.++++.+|+.|...|+++.|..|+.|||||+||.|-+....
T Consensus 367 k------------~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~- 433 (676)
T KOG0246|consen 367 K------------KKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG- 433 (676)
T ss_pred c------------cceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC-
Confidence 3 678999999999999999999999999999999999999999999999999999999999987543
Q ss_pred CCCceEEEEEEEEecCCCccccCCCCc-cccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCcccccccccccCC-
Q 003711 670 STEQQVQGILNLIDLAGSERLSKSGST-GDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGG- 747 (801)
Q Consensus 670 ~~~~~~~~~l~~vDLagse~~~~~~~~-~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~lL~~~l~g- 747 (801)
....+|++.||||||+||....... ..+.-|+..||+||.||..||++|..+ ..|+|||.||||.+|+|+|-|
T Consensus 434 --~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~n---k~H~PFR~SKLTqVLRDSFIGe 508 (676)
T KOG0246|consen 434 --EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRN---KSHLPFRGSKLTQVLRDSFIGE 508 (676)
T ss_pred --cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCC---CCCCCchhhhHHHHHHHhhcCC
Confidence 2568999999999999998766543 355679999999999999999999875 679999999999999999999
Q ss_pred CccEEEEEecCCCCCCHHHHHHHHHHHHHhhhcccCCC
Q 003711 748 DSKTLMFVNISPEASSVGESLCSLRFAARVNACEIGTP 785 (801)
Q Consensus 748 ~s~~~~i~~isp~~~~~~etl~tL~fa~~~~~~~~~~~ 785 (801)
||+|+||+||||...+.++||+|||||+||+....+..
T Consensus 509 nSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 509 NSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred CCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999998877664
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.3e-64 Score=530.05 Aligned_cols=340 Identities=38% Similarity=0.587 Sum_probs=287.4
Q ss_pred cccCceeEEeeeCCCCC-CCCCCCCCceEEcCC-----CccccccceeeecCCceeEEEeceecCCCCChhhHHHH-HHH
Q 003711 436 ELKGNIRVFCRVRPLLP-DDSSGSEGKLISYPT-----TTEALGRGIDIMQNGQKHSFSFDRVFMPDESQEDVFVE-ISQ 508 (801)
Q Consensus 436 ~l~~~i~~~~r~~~~~~-~e~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~f~fd~v~~~~~~~~~~~~~-~~~ 508 (801)
+..+-+.++||+||... .+.. |...+++..+ +.++..+.- .......+.|.|.+||+++++|.+||+. +.|
T Consensus 28 ~~~d~v~v~~rvrP~~~~~~~~-g~l~v~n~~tivL~~P~d~~~~~~-~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~p 105 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSDASEDE-GCLRVINEETIVLETPEDSFARRS-VNGGQMEKKFSFTKVFGPSVTQADVFDTTVAP 105 (809)
T ss_pred hhhcchheeEeecCCCCCcccc-ceEEEeccceeEeeCcHHHHhhhc-cCccceeeEeeeeeecCCCccHHHHHHHHhHH
Confidence 45677889999999874 3333 2222222211 111111110 0111235789999999999999999987 569
Q ss_pred HHHHhhcCCceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhh-------------------------
Q 003711 509 LVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLL------------------------- 563 (801)
Q Consensus 509 ~v~~~~~G~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~------------------------- 563 (801)
+|..++.|.|..+|+||-|||||||||+|++.++ ||+||+++-||..|.+..
T Consensus 106 lV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~---GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~ 182 (809)
T KOG0247|consen 106 LVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRP---GILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQ 182 (809)
T ss_pred HHHHHHcccceeEEEeeccCCCceEEeecCCCCC---CchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999877 999999999998765410
Q ss_pred --------------------------------------hcCCeeeEEEEEEEEEccceecccCCCccchhhhhccCCCce
Q 003711 564 --------------------------------------SQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQY 605 (801)
Q Consensus 564 --------------------------------------~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~~~~~~~~~~~~~ 605 (801)
+.+..|.|+|||+||||+-|||||.+.+....+ .+..
T Consensus 183 lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~-----~~~~ 257 (809)
T KOG0247|consen 183 LKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKL-----QKLK 257 (809)
T ss_pred hhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchh-----hhhh
Confidence 123468999999999999999999886432221 1335
Q ss_pred EEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeeccCC--CCceEEEEEEEEe
Q 003711 606 AIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNES--TEQQVQGILNLID 683 (801)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~~~--~~~~~~~~l~~vD 683 (801)
.+++|.++..+|.|++||+|.|.+|++.+|..|.++|+.++|..|..|||||+||+|.|.+.... ......|.|.|||
T Consensus 258 ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvD 337 (809)
T KOG0247|consen 258 LLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVD 337 (809)
T ss_pred hhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeee
Confidence 67899999999999999999999999999999999999999999999999999999999988877 5677899999999
Q ss_pred cCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhccc--CCCCCcccCCcccccccccccCCCccEEEEEecCCCC
Q 003711 684 LAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKE--KKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEA 761 (801)
Q Consensus 684 Lagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~--~~~~~vp~r~s~LT~lL~~~l~g~s~~~~i~~isp~~ 761 (801)
||||||..+.+..|.|++|+.+||.||++||.||.+|..+. +.+.+|||||||||++++.+|.|.+++.||+||+|.+
T Consensus 338 LAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~ 417 (809)
T KOG0247|consen 338 LAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKA 417 (809)
T ss_pred cccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCch
Confidence 99999999999999999999999999999999999998764 3357899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhcccCCC
Q 003711 762 SSVGESLCSLRFAARVNACEIGTP 785 (801)
Q Consensus 762 ~~~~etl~tL~fa~~~~~~~~~~~ 785 (801)
++|+|+++.|+||.-+..+.+..|
T Consensus 418 e~YdEnl~vlkFaeiaq~v~v~~~ 441 (809)
T KOG0247|consen 418 EDYDENLNVLKFAEIAQEVEVARP 441 (809)
T ss_pred hhHHHHHHHHHHHHhcccccccCc
Confidence 999999999999999998887665
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2e-59 Score=512.19 Aligned_cols=321 Identities=37% Similarity=0.554 Sum_probs=279.8
Q ss_pred eCCCCCCCCCCCCCceEE-cCCCccccccceeeecCCceeEEEeceecCCCCChhhHHHH-HHHHHHHhhcCCceEEEee
Q 003711 447 VRPLLPDDSSGSEGKLIS-YPTTTEALGRGIDIMQNGQKHSFSFDRVFMPDESQEDVFVE-ISQLVQSALDGYKVCIFAY 524 (801)
Q Consensus 447 ~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~f~fd~v~~~~~~~~~~~~~-~~~~v~~~~~G~n~~v~~y 524 (801)
+||+...|...|+.-++. +|....+. -|...+|.||+||+...+|.++|+. |.|+++.+|+|||++|+||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~--------ig~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlay 72 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVA--------IGKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAY 72 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCcee--------ecCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeee
Confidence 577777777666655555 34333221 2567899999999999999999976 7899999999999999999
Q ss_pred ccCCcccceeeccCCCCCCC-CCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCCCccchhhhhccCCC
Q 003711 525 GQTGSGKTYTMMGKPGHPDL-KGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGK 603 (801)
Q Consensus 525 G~tgsGKt~tl~G~~~~~~~-~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~~~~~~~~~~~ 603 (801)
|||||||||||.+....... .|+|||++.++|..+.... ...|.|.|||+|||++.|+|||.|.+.. .
T Consensus 73 gQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~--~~~f~i~vs~vely~e~v~dl~~~~~~~---------~ 141 (913)
T KOG0244|consen 73 GQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTE--SFVFRITVSFVELYNEEVLDLLKPSRLK---------A 141 (913)
T ss_pred cccCCCceeecccccccccccCCcCcchHHHHHHHHHhhh--ccceeeeeeeeeccchhhhhhcChhhhh---------h
Confidence 99999999999877433333 5999999999999998743 3789999999999999999999965431 2
Q ss_pred ceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeecc-CCCCceEEEEEEEE
Q 003711 604 QYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLN-ESTEQQVQGILNLI 682 (801)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~-~~~~~~~~~~l~~v 682 (801)
.+.+++ +.|++.+.|+|.+.|.+..++...+..|...|.+++|+||+.|||||+||++.+.+.. .+.....+++|+||
T Consensus 142 ~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlV 220 (913)
T KOG0244|consen 142 NIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLV 220 (913)
T ss_pred ceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhhee
Confidence 244555 6788999999999999999999999999999999999999999999999999998743 33344567999999
Q ss_pred ecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCcccccccccccCCCccEEEEEecCCCCC
Q 003711 683 DLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEAS 762 (801)
Q Consensus 683 DLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT~lL~~~l~g~s~~~~i~~isp~~~ 762 (801)
|||||||.+++++.|.+++|+.+||.+|++||+||.+|..... ..|||||+|+||+||+++||||+.|+||+||||+..
T Consensus 221 DLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk-~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpads 299 (913)
T KOG0244|consen 221 DLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK-GGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADS 299 (913)
T ss_pred eccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc-CCcccchHHHHHHHHHHHhcCCcceeeeeecChhhh
Confidence 9999999999999999999999999999999999999988643 789999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhcccCCCccc
Q 003711 763 SVGESLCSLRFAARVNACEIGTPRRQ 788 (801)
Q Consensus 763 ~~~etl~tL~fa~~~~~~~~~~~~~~ 788 (801)
+++||++||+||.|++.|++.|...+
T Consensus 300 n~~EtlnTl~ya~Rak~iknk~vvN~ 325 (913)
T KOG0244|consen 300 NAQETLNTLRYADRAKQIKNKPVVNQ 325 (913)
T ss_pred hhhhHHHHHHHhhHHHHhcccccccc
Confidence 99999999999999999999887655
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.3e-55 Score=484.78 Aligned_cols=290 Identities=42% Similarity=0.675 Sum_probs=270.3
Q ss_pred eeEEEeceecCCCCChhhHHHH-HHHHHHHhhcCCceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhh
Q 003711 484 KHSFSFDRVFMPDESQEDVFVE-ISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSL 562 (801)
Q Consensus 484 ~~~f~fd~v~~~~~~~~~~~~~-~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~ 562 (801)
...|.||+||++.++|++||+. +.|+++.++.|||+||||||+|||||||||.|....+ ||||+++.+||+.+...
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~---Gii~~~l~~lf~~l~~~ 131 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEP---GIIPLSLKELFSKLEDL 131 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCcccc---chHHHHHHHHHHHHHhc
Confidence 6679999999999999999976 6789999999999999999999999999999998665 99999999999998875
Q ss_pred hhcCCeeeEEEEEEEEEccceecccCCCccchhhhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcC
Q 003711 563 LSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSR 642 (801)
Q Consensus 563 ~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r 642 (801)
.. +..|.|.+||+|||||+++|||.+... .+.++.+..+++.+.+++.+.+.+.++++.+|..+..+|
T Consensus 132 ~~-~~~~~v~is~lEiYnEk~~DLl~~~~~-----------~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr 199 (568)
T COG5059 132 SM-TKDFAVSISYLEIYNEKIYDLLSPNEE-----------SLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNR 199 (568)
T ss_pred cc-CcceeeEeehhHHHhhHHHhhccCccc-----------cccccccCCCceEeecceEEecCChHHHHHHHHHhhhhc
Confidence 33 678999999999999999999998653 266788899999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCceeEEEEEEeeccCCCCceEEEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhc
Q 003711 643 SVGKTQMNEQSSRSHFVFTLRISGLNESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAK 722 (801)
Q Consensus 643 ~~~~~~~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~ 722 (801)
.++.|.+|..|||||++|++.+.+.+........+++.||||||||++..++..+.++.|+..||+||.+||+||.+|..
T Consensus 200 ~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~ 279 (568)
T COG5059 200 TTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGD 279 (568)
T ss_pred ccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhc
Confidence 99999999999999999999999998888777778999999999999999999999999999999999999999999986
Q ss_pred ccCCCCCcccCCcccccccccccCCCccEEEEEecCCCCCCHHHHHHHHHHHHHhhhcccCCCcccc
Q 003711 723 KEKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFAARVNACEIGTPRRQT 789 (801)
Q Consensus 723 ~~~~~~~vp~r~s~LT~lL~~~l~g~s~~~~i~~isp~~~~~~etl~tL~fa~~~~~~~~~~~~~~~ 789 (801)
. ++..|||||+|+||++|+++|||+++|.|||||+|...++++|.+||+||.|++.|++.+....+
T Consensus 280 ~-~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~ 345 (568)
T COG5059 280 K-KKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS 345 (568)
T ss_pred c-ccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc
Confidence 4 34779999999999999999999999999999999999999999999999999999988776643
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=2.9e-46 Score=361.40 Aligned_cols=176 Identities=58% Similarity=0.880 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHhhcCCceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEcc
Q 003711 502 VFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNE 581 (801)
Q Consensus 502 ~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e 581 (801)
||+.+.|+|+.+++|+|+|||+||+|||||||||+|++.++ ||||+++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~---Giip~~~~~--------------------------- 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGA---GIIPRTVTD--------------------------- 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCCCCC---CcchHHHHH---------------------------
Confidence 99988899999999999999999999999999999988544 999999877
Q ss_pred ceecccCCCccchhhhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEE
Q 003711 582 TIRDLLSTNRDASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFT 661 (801)
Q Consensus 582 ~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~ 661 (801)
+..++..+..+|..+.|.+|..|||||+||+
T Consensus 58 -------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~ 88 (186)
T cd01363 58 -------------------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFR 88 (186)
T ss_pred -------------------------------------------------HHHHHhhccccccccccCCCCccCcccEEEE
Confidence 6778889999999999999999999999999
Q ss_pred EEEeeccCCC---CceEEEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCcccCCcccc
Q 003711 662 LRISGLNEST---EQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEKKEDHVPFRNSKLT 738 (801)
Q Consensus 662 i~i~~~~~~~---~~~~~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~~~~vp~r~s~LT 738 (801)
|+|.+.+... .....++|+||||||||+....+..+.+++|+..||+||++|++||.+|+.+ ..|||||+|+||
T Consensus 89 i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~---~~~vpyr~SkLT 165 (186)
T cd01363 89 IHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAER---DSHVPYRESKLT 165 (186)
T ss_pred EEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcC---CCCCCCcccHHH
Confidence 9999877654 5677899999999999999999999999999999999999999999999975 679999999999
Q ss_pred cccccccCCCccEEEEEecCC
Q 003711 739 YLLQPCLGGDSKTLMFVNISP 759 (801)
Q Consensus 739 ~lL~~~l~g~s~~~~i~~isp 759 (801)
+||+|+|||||+|+||+||||
T Consensus 166 ~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 166 RLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HHHHHhcCCCCeEEEEEEeCc
Confidence 999999999999999999999
No 30
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.59 E-value=2.4e-11 Score=149.79 Aligned_cols=389 Identities=19% Similarity=0.238 Sum_probs=167.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHH
Q 003711 103 KNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALR--------NKEEELNLIIVE 174 (801)
Q Consensus 103 ~~~~~~~~~ie~l~~~i~~l~~~~~~l~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~l~--------~ei~~l~~~l~~ 174 (801)
.+...|+.+.++....+.+....+..+.....++..+++.|+.+.+.+.... .+..++. .++..+..++..
T Consensus 165 aGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~-~l~~e~~~~~~~~~~~~~~~~~~~l~~ 243 (1163)
T COG1196 165 AGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQ-ELKAELRELELALLLAKLKELRKELEE 243 (1163)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677777777777777777776666666667777777776665554332 2222222 133334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 175 LRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQH 254 (801)
Q Consensus 175 l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~ 254 (801)
+...+..++..+..+..........+..+...+..+...+..++.....+...+..++..+..+......+......++.
T Consensus 244 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~ 323 (1163)
T COG1196 244 LEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEE 323 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 255 YNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLS----TYKASQDEAMRQKDALVHEVASMRVELQQVR 330 (801)
Q Consensus 255 ~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~----~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~ 330 (801)
....+..++......+.........+......+......++..+. ........+......+..++..+..++..++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 403 (1163)
T COG1196 324 RLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELK 403 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333332222211111111111111111111111111 1111222222222333333333333333333
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHH
Q 003711 331 DDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELR 410 (801)
Q Consensus 331 ~~~~~l~~e~~~l~~el~~l~~l~~~l~~le~~~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~ 410 (801)
.+++.+...+..+...+..+.. ++..+..++..+..++..+..++..+...+..+...+.++...+..+...+..+.
T Consensus 404 ~~i~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1163)
T COG1196 404 REIESLEERLERLSERLEDLKE---ELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLE 480 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333222 3333333333333333333333333333333333333333333334444444444
Q ss_pred HHHHHHHHHHHHHHHH----------HhhhhhhhhcccCceeEEeeeCC--CCCCCCCCCCCceEEcCCCccccccceee
Q 003711 411 NHLEDAEYKLIEGEKL----------RKRLHNTILELKGNIRVFCRVRP--LLPDDSSGSEGKLISYPTTTEALGRGIDI 478 (801)
Q Consensus 411 ~~l~~l~~~l~~~e~~----------~~~l~~~l~~l~~~i~~~~r~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~i~~ 478 (801)
.++..+...+..++.. .......+..+.|.+..+++|.+ ..+.+.+.|.++-..++++..++..+|.+
T Consensus 481 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Gv~G~v~~li~v~~~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~ 560 (1163)
T COG1196 481 KELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETALEAALGNRLQAVVVENEEVAKKAIEF 560 (1163)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCCCccchHHHhcCcChHHHHHHHHHcccccCCeeeCChHHHHHHHHH
Confidence 4443333333333322 22233336678888888888855 55566777777777777777777788888
Q ss_pred ecCC---ceeEEEeceecCC
Q 003711 479 MQNG---QKHSFSFDRVFMP 495 (801)
Q Consensus 479 ~~~~---~~~~f~fd~v~~~ 495 (801)
+... .......+.+.+.
T Consensus 561 lk~~~~gr~tflpl~~i~~~ 580 (1163)
T COG1196 561 LKENKAGRATFLPLDRIKPL 580 (1163)
T ss_pred HhhcCCCccccCchhhhccc
Confidence 7643 3333333555533
No 31
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.58 E-value=3e-11 Score=152.56 Aligned_cols=44 Identities=7% Similarity=0.081 Sum_probs=23.6
Q ss_pred ccCceeEEeeeCC--CCCCCCCCCCCceEEcCCCccccccceeeec
Q 003711 437 LKGNIRVFCRVRP--LLPDDSSGSEGKLISYPTTTEALGRGIDIMQ 480 (801)
Q Consensus 437 l~~~i~~~~r~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~ 480 (801)
+.|.+..+|.|.+ ..+.+...|..+..+++++..++..+|.++.
T Consensus 523 ~~g~l~dli~v~~~y~~Aie~~lg~~l~~ivv~~~~~a~~~i~~l~ 568 (1164)
T TIGR02169 523 VHGTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLK 568 (1164)
T ss_pred ceecHHHhcCcCHHHHHHHHHHhhhhhCCEEECCHHHHHHHHHHHH
Confidence 4444555566532 2223344455455555666666667776665
No 32
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=6.2e-10 Score=126.15 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=31.1
Q ss_pred EEcCCCccccccceeeecCCceeE----EEeceecCCC---CChhhHHHH---------HHHHHHHhhcCCceEEEe
Q 003711 463 ISYPTTTEALGRGIDIMQNGQKHS----FSFDRVFMPD---ESQEDVFVE---------ISQLVQSALDGYKVCIFA 523 (801)
Q Consensus 463 ~~~~~~~~~~~~~i~~~~~~~~~~----f~fd~v~~~~---~~~~~~~~~---------~~~~v~~~~~G~n~~v~~ 523 (801)
.-++++.+....||.++.-.+.++ +...+ ++ .+-.-||.- |=+=|+.++|=.||+|++
T Consensus 1166 LElVDslDPFseGV~FSVrPpKKSWK~I~NLSG---GEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVa 1239 (1293)
T KOG0996|consen 1166 LELVDSLDPFSEGVMFSVRPPKKSWKNISNLSG---GEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVA 1239 (1293)
T ss_pred eEeeccCCCcccCceEEeeCchhhhhhcccCCc---chhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHH
Confidence 334445555556666655433333 32221 22 345556632 223488899989998875
No 33
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.53 E-value=1.3e-09 Score=134.58 Aligned_cols=18 Identities=6% Similarity=0.274 Sum_probs=9.4
Q ss_pred HHHHHHHhhcCCceEEEe
Q 003711 506 ISQLVQSALDGYKVCIFA 523 (801)
Q Consensus 506 ~~~~v~~~~~G~n~~v~~ 523 (801)
|+.+|.....+.-.-|++
T Consensus 1109 ~~~~i~e~s~~sQFIvIT 1126 (1163)
T COG1196 1109 VARLIKEMSKETQFIVIT 1126 (1163)
T ss_pred HHHHHHHhCcCCeEEEEE
Confidence 455555555555555553
No 34
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.50 E-value=1e-09 Score=138.57 Aligned_cols=29 Identities=7% Similarity=0.219 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003711 108 YKERCENMMDYIKRLRLCIKWFQELEGDY 136 (801)
Q Consensus 108 ~~~~ie~l~~~i~~l~~~~~~l~~~~~~~ 136 (801)
|..++......+.++...+..+......+
T Consensus 168 ~~~~~~~~~~~l~~~~~~l~el~~~~~~L 196 (1164)
T TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEK 196 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333333333
No 35
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.49 E-value=7.6e-10 Score=140.24 Aligned_cols=17 Identities=12% Similarity=0.047 Sum_probs=9.2
Q ss_pred CCchHHHHHHHHHHHHh
Q 003711 545 KGLIPRSLEQIFQTRQS 561 (801)
Q Consensus 545 ~Gii~r~~~~lf~~~~~ 561 (801)
.|+=+.....++..+..
T Consensus 1122 ~~ld~~~~~~~~~~~~~ 1138 (1179)
T TIGR02168 1122 APLDDANVERFANLLKE 1138 (1179)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 35555555555555544
No 36
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.48 E-value=1.5e-09 Score=137.48 Aligned_cols=26 Identities=23% Similarity=0.091 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 399 FEGQKKLINELRNHLEDAEYKLIEGE 424 (801)
Q Consensus 399 ~~~~~~~l~~l~~~l~~l~~~l~~~e 424 (801)
+..+..++.++...+..|...+.+..
T Consensus 995 ~~~l~~q~~dL~~~~~~L~~~i~~i~ 1020 (1179)
T TIGR02168 995 YEELKERYDFLTAQKEDLTEAKETLE 1020 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333
No 37
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.46 E-value=4.4e-09 Score=128.96 Aligned_cols=125 Identities=18% Similarity=0.246 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 171 IIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNS 250 (801)
Q Consensus 171 ~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~ 250 (801)
....++..+..+..++...+.....+........+.+..+...+..++..+.++..+......++..++.++..+.+.+.
T Consensus 902 ~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~ 981 (1930)
T KOG0161|consen 902 EKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENIS 981 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333433333334443333334444444444433333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 251 SLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQ 295 (801)
Q Consensus 251 ~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~ 295 (801)
++..+...++..+..+...+...+.....+......++..+..++
T Consensus 982 kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le 1026 (1930)
T KOG0161|consen 982 KLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLE 1026 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 38
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.46 E-value=6.2e-09 Score=127.65 Aligned_cols=137 Identities=18% Similarity=0.207 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYIS 293 (801)
Q Consensus 214 ~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~ 293 (801)
+...+.+...+......+...+.+++..++.-+....+++....+++.++..+...+..+...+..+...+...+.++..
T Consensus 1001 l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~ 1080 (1930)
T KOG0161|consen 1001 LQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQ 1080 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444444444444444555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003711 294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKH 350 (801)
Q Consensus 294 l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~~e~~~l~~el~~l 350 (801)
++.++++....+..+.+.+.++...+..+..+++.-+..+.+++.....+..+++.+
T Consensus 1081 l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l 1137 (1930)
T KOG0161|consen 1081 LQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEEL 1137 (1930)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555554444444444444443
No 39
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.43 E-value=8.3e-08 Score=105.72 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=8.5
Q ss_pred ceecCCCCChhhHHH
Q 003711 490 DRVFMPDESQEDVFV 504 (801)
Q Consensus 490 d~v~~~~~~~~~~~~ 504 (801)
+.||...+-+.-.|.
T Consensus 652 eavt~ghageqyaf~ 666 (1243)
T KOG0971|consen 652 EAVTRGHAGEQYAFA 666 (1243)
T ss_pred hhccccchhHHHHHH
Confidence 556655555555553
No 40
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=6.9e-09 Score=117.91 Aligned_cols=49 Identities=10% Similarity=0.066 Sum_probs=26.5
Q ss_pred hhhhcccCceeEEeeeCCC--CCCCCCCCCCceEEcCCCccccccceeeecC
Q 003711 432 NTILELKGNIRVFCRVRPL--LPDDSSGSEGKLISYPTTTEALGRGIDIMQN 481 (801)
Q Consensus 432 ~~l~~l~~~i~~~~r~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~~ 481 (801)
..|....|.+.+++-|.+. .+.- ..|..+-..+++..+.+..||.++..
T Consensus 613 G~i~Gf~GRLGDLg~Id~kYDvAIs-Tac~~LdyiVVdt~e~aq~cI~fl~~ 663 (1293)
T KOG0996|consen 613 GRIPGFYGRLGDLGAIDEKYDVAIS-TACARLDYIVVDTIETAQECINFLKK 663 (1293)
T ss_pred CCCCccccccccccccchHHHHHHH-HhccccceEEeccHHHHHHHHHHHHH
Confidence 3455666666666666331 1111 12344555666666666677777653
No 41
>PRK02224 chromosome segregation protein; Provisional
Probab=99.42 E-value=1e-08 Score=124.81 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=5.2
Q ss_pred hHHHHHHHHHH
Q 003711 548 IPRSLEQIFQT 558 (801)
Q Consensus 548 i~r~~~~lf~~ 558 (801)
|...+..+|..
T Consensus 739 ~~~~~~~~~~~ 749 (880)
T PRK02224 739 LERMLNETFDL 749 (880)
T ss_pred HHHHHHHHHHH
Confidence 44444455543
No 42
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.37 E-value=3.4e-08 Score=106.56 Aligned_cols=18 Identities=11% Similarity=-0.068 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003711 109 KERCENMMDYIKRLRLCI 126 (801)
Q Consensus 109 ~~~ie~l~~~i~~l~~~~ 126 (801)
..+++....+..+|....
T Consensus 142 Q~qlE~~qkE~eeL~~~~ 159 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKEN 159 (546)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 43
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=99.35 E-value=2.5e-08 Score=107.57 Aligned_cols=137 Identities=16% Similarity=0.224 Sum_probs=83.5
Q ss_pred HHHHHHHHhHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 89 REDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELE--------GDYAFEHERLRNALELSEQKCAEMELA 160 (801)
Q Consensus 89 ~~e~~~l~~e~~~~~~~~~~~~~ie~l~~~i~~l~~~~~~l~~~~--------~~~~~e~~~l~~~l~~~~~~~~~l~~~ 160 (801)
+.|+..|..-+.. |..++..|+++...|...+..++... ..++.++..+..-+++.......++.+
T Consensus 41 K~El~~LNDRLA~------YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~e 114 (546)
T KOG0977|consen 41 KKELQELNDRLAV------YIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIE 114 (546)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777444444 89999999999999999998887643 346777888888888777777777777
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 161 LRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRI 235 (801)
Q Consensus 161 l~~ei~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l 235 (801)
+..+..+++++...+....+.......+.......+..+..++..+...+..++.++..++.+...+...+
T Consensus 115 ----i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l 185 (546)
T KOG0977|consen 115 ----ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREEL 185 (546)
T ss_pred ----HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 66666666666666666555554444444433333333333333333333333333333333333333333
No 44
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=1.1e-07 Score=105.97 Aligned_cols=154 Identities=12% Similarity=0.170 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Q 003711 315 LVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALE 394 (801)
Q Consensus 315 l~~e~~~l~~el~~l~~~~~~l~~e~~~l~~el~~l~~l~~~l~~le~~~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~ 394 (801)
+..++..+..-+.......+.++.++..++.++....+ ++..++..+.+...++..+-.+...+..+++++......
T Consensus 395 ir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e---~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~ 471 (1200)
T KOG0964|consen 395 IRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLE---EIKELESSINETKGRMEEFDAENTELKRELDELQDKRKE 471 (1200)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555555555555444 566666666666666666666666666666666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhhhh--hhcccCceeEEeeeCC--CCCCCCCCCCCce
Q 003711 395 TKTEFEGQKKLINELRNHLEDAEYKLIEGE--------KLRKRLHNT--ILELKGNIRVFCRVRP--LLPDDSSGSEGKL 462 (801)
Q Consensus 395 ~~~~~~~~~~~l~~l~~~l~~l~~~l~~~e--------~~~~~l~~~--l~~l~~~i~~~~r~~~--~~~~e~~~~~~~~ 462 (801)
++.+-..++..+..+...+...+..+...- .-.+.+... +..+.|-+-.++.|.+ ....|.-+|.++.
T Consensus 472 lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF 551 (1200)
T KOG0964|consen 472 LWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAVEVTAGNSLF 551 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCCHHHHhHHhhhcccceE
Confidence 555555555555555555544444333211 111111111 3445566666666644 3445777777887
Q ss_pred EEcCCCccc
Q 003711 463 ISYPTTTEA 471 (801)
Q Consensus 463 ~~~~~~~~~ 471 (801)
.++++++.+
T Consensus 552 ~iVVdndev 560 (1200)
T KOG0964|consen 552 NIVVDNDEV 560 (1200)
T ss_pred EEEecccHH
Confidence 777777665
No 45
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.30 E-value=1.7e-06 Score=95.74 Aligned_cols=6 Identities=33% Similarity=0.506 Sum_probs=2.5
Q ss_pred EEEEEE
Q 003711 574 SMLEIY 579 (801)
Q Consensus 574 S~~ei~ 579 (801)
++.+||
T Consensus 885 ~~eriy 890 (1243)
T KOG0971|consen 885 ASERIY 890 (1243)
T ss_pred chhhhc
Confidence 344444
No 46
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.23 E-value=6.3e-07 Score=112.54 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCce
Q 003711 402 QKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELKGNI 441 (801)
Q Consensus 402 ~~~~l~~l~~~l~~l~~~l~~~e~~~~~l~~~l~~l~~~i 441 (801)
+..+..++..++..+....+.+....+.+..++..++..+
T Consensus 1052 ~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1052 MKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444445555555554444
No 47
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=1.8e-06 Score=97.12 Aligned_cols=101 Identities=14% Similarity=0.215 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYIS 293 (801)
Q Consensus 214 ~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~ 293 (801)
+.++..++..++..+++....++..+.+.+.++-+...++.++...+..+..+...+..+..++..+...+...+.....
T Consensus 789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~ 868 (1174)
T KOG0933|consen 789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKK 868 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Confidence 33444444444444444434444444444444444444444444444445555555555555555555555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003711 294 LQEQLSTYKASQDEAMRQKDA 314 (801)
Q Consensus 294 l~~~l~~~~~~~~~~~~~~~~ 314 (801)
++.++......+.....++..
T Consensus 869 ~~~el~~~k~k~~~~dt~i~~ 889 (1174)
T KOG0933|consen 869 AQAELKDQKAKQRDIDTEISG 889 (1174)
T ss_pred HHHHHHHHHHHHHhhhHHHhh
Confidence 554444444444444434333
No 48
>PRK03918 chromosome segregation protein; Provisional
Probab=99.20 E-value=2.2e-06 Score=104.79 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 003711 113 ENMMDYIKRLRL 124 (801)
Q Consensus 113 e~l~~~i~~l~~ 124 (801)
..+..++..+..
T Consensus 203 ~~l~~ei~~l~~ 214 (880)
T PRK03918 203 EEVLREINEISS 214 (880)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 49
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=99.19 E-value=2.9e-06 Score=95.34 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 274 EKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVAS 321 (801)
Q Consensus 274 ~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~ 321 (801)
+.+...+..+++.++.++..+...+.+++.....+..+.+.+..++..
T Consensus 407 eke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t 454 (1195)
T KOG4643|consen 407 EKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETST 454 (1195)
T ss_pred HHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444444333
No 50
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=99.18 E-value=2.4e-06 Score=93.14 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 315 LVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE----LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKL 385 (801)
Q Consensus 315 l~~e~~~l~~el~~l~~~~~~l~~e~~~l~~el~~l~~----l~~~l~~le~~~~~l~~~~~~l~~~l~~l~~~l 385 (801)
+..++..++..+.+.+...+.+...+++|+.+-..+.. +++..+..+..+..+.....+++++++.++..+
T Consensus 328 ltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~i 402 (1265)
T KOG0976|consen 328 LTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHI 402 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444444444443333211 222344444444444444444444554444443
No 51
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.17 E-value=1.4e-06 Score=99.78 Aligned_cols=112 Identities=21% Similarity=0.209 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 165 EEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKL 244 (801)
Q Consensus 165 i~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~ 244 (801)
++.+..++.....++..++.++..+.....+....++.++..+...+.....|..+++.+...+......+......+..
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~ 368 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEK 368 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555554444445555555554555555555555555554444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 245 LQEYNSSLQHYNTKLQKDIDAAHESIKRGEKE 276 (801)
Q Consensus 245 l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e 276 (801)
++++...+..++..+...++.....+..+...
T Consensus 369 ~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k 400 (775)
T PF10174_consen 369 LQEEKSRLQGEIEDLRDMLDKKERKINVLQKK 400 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333333333333333333
No 52
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=99.17 E-value=4.2e-06 Score=91.37 Aligned_cols=30 Identities=23% Similarity=0.071 Sum_probs=13.8
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHhhhccc
Q 003711 751 TLMFVNISPEASSVGESLCSLRFAARVNACEI 782 (801)
Q Consensus 751 ~~~i~~isp~~~~~~etl~tL~fa~~~~~~~~ 782 (801)
.+||+.-+ +.+.++=-.-|.-|.+++-..+
T Consensus 897 ~l~I~ap~--~~saerwA~CLq~aqk~rmmln 926 (1265)
T KOG0976|consen 897 LLMIAAPS--PKSAERWALCLQDAQKVRMMLN 926 (1265)
T ss_pred hheeecCC--CccHHHHHHHHHHHHHHHHHhc
Confidence 33444433 3444444444555555544443
No 53
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.16 E-value=8.8e-06 Score=93.49 Aligned_cols=15 Identities=33% Similarity=0.273 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHhhcC
Q 003711 628 TKEVSYLLDRAAHSR 642 (801)
Q Consensus 628 ~~e~~~~l~~~~~~r 642 (801)
+.+++..+..+...|
T Consensus 914 ~~e~L~~l~~~l~~R 928 (1074)
T KOG0250|consen 914 LDELLKALGEALESR 928 (1074)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555444
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.16 E-value=7.2e-06 Score=94.18 Aligned_cols=68 Identities=21% Similarity=0.235 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 357 SEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGE 424 (801)
Q Consensus 357 l~~le~~~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~e 424 (801)
++++..++.....+++..+..+..++.++..+.....++...+......+.....++..+..++...+
T Consensus 736 ~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~ 803 (1074)
T KOG0250|consen 736 LEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLRE 803 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444455555555555555555555555555555555555555555555555555544444433
No 55
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.14 E-value=8.7e-06 Score=91.53 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003711 111 RCENMMDYIKRLRLCIK 127 (801)
Q Consensus 111 ~ie~l~~~i~~l~~~~~ 127 (801)
+++.....+.+|..+++
T Consensus 63 ELe~akr~veel~~kLe 79 (522)
T PF05701_consen 63 ELESAKRTVEELKLKLE 79 (522)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 56
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=99.13 E-value=2.7e-06 Score=95.56 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003711 292 ISLQEQLSTYKASQDEA 308 (801)
Q Consensus 292 ~~l~~~l~~~~~~~~~~ 308 (801)
+.++..+..+.....++
T Consensus 418 e~Leeri~ql~qq~~el 434 (1195)
T KOG4643|consen 418 EILEERINQLLQQLAEL 434 (1195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 57
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.12 E-value=6.8e-06 Score=94.32 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003711 356 SSEDLEARCASQSNQIRSLSDQL 378 (801)
Q Consensus 356 ~l~~le~~~~~l~~~~~~l~~~l 378 (801)
.+..++-.+.....++..+..++
T Consensus 515 ~i~~l~I~lEk~rek~~kl~~ql 537 (775)
T PF10174_consen 515 EIERLEIELEKKREKHEKLEKQL 537 (775)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333333333344444444433
No 58
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=99.10 E-value=3.7e-06 Score=89.22 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 108 YKERCENMMDYIKRLRLCIKWFQEL 132 (801)
Q Consensus 108 ~~~~ie~l~~~i~~l~~~~~~l~~~ 132 (801)
|..++..|+.+...|...+..+...
T Consensus 16 YIekVr~LE~~N~~Le~~i~~~~~~ 40 (312)
T PF00038_consen 16 YIEKVRFLEQENKRLESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 7788888888888888777666544
No 59
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=1.4e-05 Score=90.17 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 003711 111 RCENMMDYIKRLR 123 (801)
Q Consensus 111 ~ie~l~~~i~~l~ 123 (801)
+++.++.+++.++
T Consensus 692 el~~le~eL~~le 704 (1174)
T KOG0933|consen 692 ELEALERELKSLE 704 (1174)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 60
>PRK01156 chromosome segregation protein; Provisional
Probab=99.05 E-value=1.5e-05 Score=97.14 Aligned_cols=12 Identities=8% Similarity=-0.197 Sum_probs=4.8
Q ss_pred CchHHHHHHHHH
Q 003711 546 GLIPRSLEQIFQ 557 (801)
Q Consensus 546 Gii~r~~~~lf~ 557 (801)
|+=+.....++.
T Consensus 837 ~lD~~~~~~l~~ 848 (895)
T PRK01156 837 FLDEDRRTNLKD 848 (895)
T ss_pred cCCHHHHHHHHH
Confidence 443444333333
No 61
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.05 E-value=4.9e-05 Score=85.51 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003711 212 RSHASLSEDLGKAQEEL 228 (801)
Q Consensus 212 ~~~~~l~~el~~l~~~l 228 (801)
..+..|..++..++..+
T Consensus 172 ~kve~L~~Ei~~lke~l 188 (522)
T PF05701_consen 172 EKVEELSKEIIALKESL 188 (522)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 62
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.03 E-value=2.4e-05 Score=95.26 Aligned_cols=6 Identities=17% Similarity=0.229 Sum_probs=2.4
Q ss_pred HHHHHh
Q 003711 92 VEALLS 97 (801)
Q Consensus 92 ~~~l~~ 97 (801)
+.+|.+
T Consensus 638 l~qLe~ 643 (1822)
T KOG4674|consen 638 LRQLEN 643 (1822)
T ss_pred HHHHHH
Confidence 344433
No 63
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=2.1e-05 Score=88.45 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003711 356 SSEDLEARCASQSNQIRSLSDQLAAAEEKLEVS 388 (801)
Q Consensus 356 ~l~~le~~~~~l~~~~~~l~~~l~~l~~~l~~~ 388 (801)
++.+++.++.....++..+...+.....++..+
T Consensus 419 e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~ 451 (1200)
T KOG0964|consen 419 EIEDLESELKEKLEEIKELESSINETKGRMEEF 451 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHH
Confidence 444444444444444444444444444444433
No 64
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=99.01 E-value=7.8e-06 Score=88.72 Aligned_cols=154 Identities=14% Similarity=0.215 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 109 KERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAK 188 (801)
Q Consensus 109 ~~~ie~l~~~i~~l~~~~~~l~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l~~ 188 (801)
+.++.+|.+.+...-.+++.|+.....+..++..++.-.. .....+......++..+..-+++.......++.++..
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~---~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~k 117 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVG---RETSGIKAKYEAELATARKLLDETARERAKLEIEITK 117 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666665555555555555444443221 0111112222223444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 189 EESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDA 265 (801)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~ 265 (801)
+..+..++...+............++......+..++.++.-++..+..++.++..+..++..+...+..+..+++.
T Consensus 118 l~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 118 LREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44444444444444433333444444444444455555555555555555555555555555555555544444443
No 65
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=99.00 E-value=1.1e-05 Score=92.12 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=6.2
Q ss_pred CchHHHHHHHHH
Q 003711 546 GLIPRSLEQIFQ 557 (801)
Q Consensus 546 Gii~r~~~~lf~ 557 (801)
|.+.|+.+..+.
T Consensus 552 G~~~ri~~~y~~ 563 (569)
T PRK04778 552 GVTKRIEDSYEK 563 (569)
T ss_pred cHHHHHHHHHHh
Confidence 555555555443
No 66
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.99 E-value=2e-05 Score=83.52 Aligned_cols=81 Identities=20% Similarity=0.211 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 164 KEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYK 243 (801)
Q Consensus 164 ei~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~ 243 (801)
++..+...+..+..+...+..++..+..+...+...+.........++.++..+...++........++.++..+..++.
T Consensus 55 el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 55 ELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 35555555555555555555555555555555555555555555555555555555555555555555555555554444
Q ss_pred H
Q 003711 244 L 244 (801)
Q Consensus 244 ~ 244 (801)
-
T Consensus 135 f 135 (312)
T PF00038_consen 135 F 135 (312)
T ss_dssp H
T ss_pred H
Confidence 3
No 67
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.96 E-value=4.2e-05 Score=94.74 Aligned_cols=33 Identities=3% Similarity=-0.045 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 003711 118 YIKRLRLCIKWFQELEGDYAFEHERLRNALELS 150 (801)
Q Consensus 118 ~i~~l~~~~~~l~~~~~~~~~e~~~l~~~l~~~ 150 (801)
.+...+..+..+.....++...+..|+.+++.+
T Consensus 301 kLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA 333 (1486)
T PRK04863 301 QLAAEQYRLVEMARELAELNEAESDLEQDYQAA 333 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344444444333
No 68
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.95 E-value=9.5e-05 Score=90.28 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcccCceeE
Q 003711 409 LRNHLEDAEYKLIEGEKLRKRLHNTILELKGNIRV 443 (801)
Q Consensus 409 l~~~l~~l~~~l~~~e~~~~~l~~~l~~l~~~i~~ 443 (801)
+..++..+...+..++.....++.++..+..++.+
T Consensus 1104 Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~ 1138 (1822)
T KOG4674|consen 1104 LEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAV 1138 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44445555556666666667777777777776665
No 69
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.92 E-value=0.0001 Score=83.94 Aligned_cols=12 Identities=17% Similarity=0.288 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 003711 406 INELRNHLEDAE 417 (801)
Q Consensus 406 l~~l~~~l~~l~ 417 (801)
|.....++..|+
T Consensus 1726 L~~~~aeL~~Le 1737 (1758)
T KOG0994|consen 1726 LEDKAAELAGLE 1737 (1758)
T ss_pred HHHHHHHhhhHH
Confidence 333333333333
No 70
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.91 E-value=0.00028 Score=88.05 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhc
Q 003711 707 NKSLSSLSDVIFALAK 722 (801)
Q Consensus 707 n~sl~~L~~~i~~l~~ 722 (801)
..+...+..++.+|-.
T Consensus 1124 G~syLi~~~~~i~l~~ 1139 (1201)
T PF12128_consen 1124 GTSYLILCMFFIALTR 1139 (1201)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4566777777777754
No 71
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.91 E-value=6.4e-05 Score=87.00 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=5.1
Q ss_pred hhhhhhhhcccC
Q 003711 428 KRLHNTILELKG 439 (801)
Q Consensus 428 ~~l~~~l~~l~~ 439 (801)
+.+..+...+.+
T Consensus 807 ~~~e~~~~q~~~ 818 (1317)
T KOG0612|consen 807 KQLEEENAQLRG 818 (1317)
T ss_pred HHHHHHHHHhhc
Confidence 344444444444
No 72
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.91 E-value=0.00019 Score=82.04 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 003711 112 CENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELS 150 (801)
Q Consensus 112 ie~l~~~i~~l~~~~~~l~~~~~~~~~e~~~l~~~l~~~ 150 (801)
++..+..+..+...+..+...+.....++..++.....+
T Consensus 114 l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~ 152 (569)
T PRK04778 114 LDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYREL 152 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443333334444444333333
No 73
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.90 E-value=0.00031 Score=87.63 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=7.0
Q ss_pred EEEEecCCCCCC
Q 003711 752 LMFVNISPEASS 763 (801)
Q Consensus 752 ~~i~~isp~~~~ 763 (801)
+.|++-+|+++.
T Consensus 1176 I~li~A~P~~~~ 1187 (1201)
T PF12128_consen 1176 ISLISAFPNPDS 1187 (1201)
T ss_pred ceEEEeCCCCCh
Confidence 345566687754
No 74
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.89 E-value=0.00017 Score=82.25 Aligned_cols=9 Identities=11% Similarity=0.242 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 003711 405 LINELRNHL 413 (801)
Q Consensus 405 ~l~~l~~~l 413 (801)
+|..|+.++
T Consensus 1732 eL~~Le~r~ 1740 (1758)
T KOG0994|consen 1732 ELAGLEKRV 1740 (1758)
T ss_pred HhhhHHHHH
Confidence 333333333
No 75
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.87 E-value=5.1e-05 Score=94.09 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 003711 112 CENMMDYIKRLRLCI 126 (801)
Q Consensus 112 ie~l~~~i~~l~~~~ 126 (801)
++.|...+..++..+
T Consensus 232 i~~m~~~l~~~r~t~ 246 (1486)
T PRK04863 232 FQDMEAALRENRMTL 246 (1486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444433333
No 76
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=0.00032 Score=75.45 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 165 EEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEEL 228 (801)
Q Consensus 165 i~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l 228 (801)
++.++.....++..+...+.-+..+..........+..+..++...+.++..++.+.+.|+..+
T Consensus 261 ~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 261 EESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444444444444444433
No 77
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=5.8e-05 Score=86.25 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=23.1
Q ss_pred cHHHHHHHHhHHHhhcchhhhHHHHHHHHHHHHHHHHHHHH
Q 003711 88 TREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKW 128 (801)
Q Consensus 88 ~~~e~~~l~~e~~~~~~~~~~~~~ie~l~~~i~~l~~~~~~ 128 (801)
+..|+..|-++ ..+..+++.+.+.+..+...+......
T Consensus 141 ~PkElt~LFEE---ISgSiElK~EYeelK~E~~kAE~~t~~ 178 (1141)
T KOG0018|consen 141 NPKELTALFEE---ISGSIELKPEYEELKYEMAKAEETTTG 178 (1141)
T ss_pred CHHHHHHHHHH---HhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 45666666554 344556777777777777666555533
No 78
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.84 E-value=0.00047 Score=78.27 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003711 108 YKERCENMMDYIKRLRLCIKWFQELEG 134 (801)
Q Consensus 108 ~~~~ie~l~~~i~~l~~~~~~l~~~~~ 134 (801)
|..+|.+++.+++.++..+...+...+
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~ 58 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENE 58 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666555544433333
No 79
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.84 E-value=1.7e-05 Score=90.95 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003711 112 CENMMDYIKRLRLCIKWFQELEGDYAFE 139 (801)
Q Consensus 112 ie~l~~~i~~l~~~~~~l~~~~~~~~~e 139 (801)
+..|+.++++|+..+...+..+.++...
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3345555555655555555544444333
No 80
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.80 E-value=0.00014 Score=84.21 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=11.5
Q ss_pred HHHHhhhhhhhhcccCcee
Q 003711 424 EKLRKRLHNTILELKGNIR 442 (801)
Q Consensus 424 e~~~~~l~~~l~~l~~~i~ 442 (801)
+...+.+.+.+.+++.++.
T Consensus 792 Ekq~~~~~~~l~~~K~~~e 810 (1317)
T KOG0612|consen 792 EKQLKKLLDELAELKKQLE 810 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666554
No 81
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=5.5e-05 Score=86.44 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=13.7
Q ss_pred hhhhhhhhcccCceeEEeeeC
Q 003711 428 KRLHNTILELKGNIRVFCRVR 448 (801)
Q Consensus 428 ~~l~~~l~~l~~~i~~~~r~~ 448 (801)
..|....-...|.+-++|+..
T Consensus 495 e~lKr~fPgv~GrviDLc~pt 515 (1141)
T KOG0018|consen 495 EALKRLFPGVYGRVIDLCQPT 515 (1141)
T ss_pred HHHHHhCCCccchhhhccccc
Confidence 445555556677788888764
No 82
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.77 E-value=0.00024 Score=80.31 Aligned_cols=9 Identities=44% Similarity=0.553 Sum_probs=5.7
Q ss_pred EEEEEEecC
Q 003711 677 GILNLIDLA 685 (801)
Q Consensus 677 ~~l~~vDLa 685 (801)
+.+..|.|+
T Consensus 542 gdl~EvsL~ 550 (617)
T PF15070_consen 542 GDLEEVSLA 550 (617)
T ss_pred ccccccccc
Confidence 456667776
No 83
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=0.00061 Score=73.39 Aligned_cols=6 Identities=17% Similarity=0.562 Sum_probs=2.2
Q ss_pred HHHHHH
Q 003711 143 LRNALE 148 (801)
Q Consensus 143 l~~~l~ 148 (801)
|+.++.
T Consensus 271 L~~D~n 276 (581)
T KOG0995|consen 271 LQDDVN 276 (581)
T ss_pred HHhHHH
Confidence 333333
No 84
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.76 E-value=0.00096 Score=75.56 Aligned_cols=41 Identities=10% Similarity=0.090 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 003711 110 ERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELS 150 (801)
Q Consensus 110 ~~ie~l~~~i~~l~~~~~~l~~~~~~~~~e~~~l~~~l~~~ 150 (801)
.+...+...+..+...+..++.........+..|+..|..+
T Consensus 22 ~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 22 EESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433333333333333343333333
No 85
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.72 E-value=2.2e-09 Score=126.98 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhcccCcee
Q 003711 423 GEKLRKRLHNTILELKGNIR 442 (801)
Q Consensus 423 ~e~~~~~l~~~l~~l~~~i~ 442 (801)
.+..++.+...|..|...+.
T Consensus 516 ~E~~Rr~~qr~l~~le~~LE 535 (859)
T PF01576_consen 516 FEETRRNHQRQLESLEAELE 535 (859)
T ss_dssp --------------------
T ss_pred HHHHHHhhHHHHHHHHhHHH
Confidence 34445555555555555443
No 86
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=0.0011 Score=73.13 Aligned_cols=77 Identities=25% Similarity=0.255 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003711 107 NYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQ 183 (801)
Q Consensus 107 ~~~~~ie~l~~~i~~l~~~~~~l~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~ 183 (801)
.|..+++........+...-..++.....+...+.....+.........++..+...++.++...+..+...+..++
T Consensus 95 ~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q 171 (716)
T KOG4593|consen 95 NYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQ 171 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554444444444333444444444555555555444444444444443333334444433333333333333
No 87
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.71 E-value=2.2e-05 Score=89.97 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 003711 173 VELRKSFASLQEKLAK 188 (801)
Q Consensus 173 ~~l~~~l~~l~~~l~~ 188 (801)
..++.++..|+.++..
T Consensus 421 ~rLE~dvkkLraeLq~ 436 (697)
T PF09726_consen 421 SRLEADVKKLRAELQS 436 (697)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444443
No 88
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=0.00043 Score=76.13 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=16.9
Q ss_pred EEEEEecCCCccccCCCCccccc
Q 003711 678 ILNLIDLAGSERLSKSGSTGDRL 700 (801)
Q Consensus 678 ~l~~vDLagse~~~~~~~~~~~~ 700 (801)
..-.+|-+|+....+++..+.+-
T Consensus 957 y~r~~~q~gs~Tp~k~g~~~kkp 979 (1118)
T KOG1029|consen 957 YVRPKDQEGSGTPPKQGPTPKKP 979 (1118)
T ss_pred eeeehhccCCCCCCCCCCCCCCc
Confidence 45577888888887777776665
No 89
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=6.7e-05 Score=82.97 Aligned_cols=11 Identities=36% Similarity=0.640 Sum_probs=5.9
Q ss_pred cHHHHHHHHhH
Q 003711 88 TREDVEALLSE 98 (801)
Q Consensus 88 ~~~e~~~l~~e 98 (801)
.++++..+...
T Consensus 567 ~r~~~~~lItk 577 (970)
T KOG0946|consen 567 SRSDVYQLITK 577 (970)
T ss_pred cHHHHHHHHHH
Confidence 45666665443
No 90
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.69 E-value=3.8e-05 Score=88.90 Aligned_cols=13 Identities=8% Similarity=0.084 Sum_probs=5.0
Q ss_pred chHHHHHHHHHHH
Q 003711 547 LIPRSLEQIFQTR 559 (801)
Q Consensus 547 ii~r~~~~lf~~~ 559 (801)
+=+.....++..+
T Consensus 510 ld~~~~~~~~~~l 522 (562)
T PHA02562 510 LDAEGTKALLSIL 522 (562)
T ss_pred cchhHHHHHHHHH
Confidence 3333333344333
No 91
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.67 E-value=0.00061 Score=68.09 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 165 EEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDL 221 (801)
Q Consensus 165 i~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el 221 (801)
+..+....+.+..+...+......+..+...+...+..+++.+..+...+..+...+
T Consensus 36 ~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~ 92 (294)
T COG1340 36 ASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEY 92 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333
No 92
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.65 E-value=4.5e-05 Score=88.28 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 168 LNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQE 247 (801)
Q Consensus 168 l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~ 247 (801)
+...+.+++.++..+..++..+..+...+...+...... ....+..++.+++.+..+...+..++..++.++..+..
T Consensus 172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~---~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~ 248 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKK---NGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555666666666666665555544433333333221 12233344444444444444444444444444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 248 YNSSLQHYNTKLQKDIDAAHESIKRGE 274 (801)
Q Consensus 248 ~~~~l~~~~~~l~~el~~l~~~~~~l~ 274 (801)
.+..+...+..++.++..++..+..++
T Consensus 249 ~i~~~~~~L~~l~~~~~~~~~~l~~~~ 275 (562)
T PHA02562 249 DIEDPSAALNKLNTAAAKIKSKIEQFQ 275 (562)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 93
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.62 E-value=0.0025 Score=72.57 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhhhhhhhcccC
Q 003711 417 EYKLIEGEKLRKRLHNTILELKG 439 (801)
Q Consensus 417 ~~~l~~~e~~~~~l~~~l~~l~~ 439 (801)
...+.....++..+.++|..|+.
T Consensus 439 q~~LnsAQDELvtfSEeLAqLYH 461 (717)
T PF09730_consen 439 QGSLNSAQDELVTFSEELAQLYH 461 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444445555555544
No 94
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=98.61 E-value=0.00047 Score=69.86 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=14.5
Q ss_pred CCceEEEeeccCCcccceeeccCC
Q 003711 516 GYKVCIFAYGQTGSGKTYTMMGKP 539 (801)
Q Consensus 516 G~n~~v~~yG~tgsGKt~tl~G~~ 539 (801)
-.|.|||+- |.|-+++-.|+.
T Consensus 391 a~nr~vf~~---~e~~at~~~~ps 411 (499)
T COG4372 391 ATNRCVFAT---GEGRATPRCGPS 411 (499)
T ss_pred ccceeeecc---ccccccCccCCC
Confidence 458999974 467777766654
No 95
>PRK11637 AmiB activator; Provisional
Probab=98.59 E-value=0.00013 Score=80.77 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 110 ERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKE 189 (801)
Q Consensus 110 ~~ie~l~~~i~~l~~~~~~l~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l~~l 189 (801)
.+++++..+++.+...+..++........++..+..++..+...+..++.+ +..++.++..++.++..++.++...
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~----i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNT----LNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333333444444444444444444444444444 4444444444444444444444433
No 96
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=0.003 Score=70.95 Aligned_cols=157 Identities=16% Similarity=0.197 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 284 LSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEAR 363 (801)
Q Consensus 284 l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~~e~~~l~~el~~l~~l~~~l~~le~~ 363 (801)
+++.+.++..+-.++.+.....-.+..+..........+..++..+..++..+......+...+..+.+ +...+...
T Consensus 463 ~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~lee---q~~~lt~~ 539 (698)
T KOG0978|consen 463 FEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEE---QERGLTSN 539 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHh
Confidence 333333333333333333333333333344444444444444444444444444444444444444333 44444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCceeE
Q 003711 364 CASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELKGNIRV 443 (801)
Q Consensus 364 ~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~e~~~~~l~~~l~~l~~~i~~ 443 (801)
...+..++..+...+.........+......+..+.+.....+.+++..+.++..++......+..++.++..++.++.-
T Consensus 540 ~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 540 ESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLER 619 (698)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444555555555555566666666666666655555556666666666655443
No 97
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.57 E-value=0.0024 Score=69.53 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003711 109 KERCENMMDYIKRLRLCI 126 (801)
Q Consensus 109 ~~~ie~l~~~i~~l~~~~ 126 (801)
.-.++.+..+|..|...+
T Consensus 345 q~eLdK~~~~i~~Ln~~l 362 (961)
T KOG4673|consen 345 QLELDKTKKEIKMLNNAL 362 (961)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555555555544
No 98
>PRK11637 AmiB activator; Provisional
Probab=98.54 E-value=0.00024 Score=78.67 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=5.9
Q ss_pred CceeEEEEEE
Q 003711 655 RSHFVFTLRI 664 (801)
Q Consensus 655 rsh~i~~i~i 664 (801)
..|+.|.|+.
T Consensus 406 ~~~l~fei~~ 415 (428)
T PRK11637 406 RPSLYFEIRR 415 (428)
T ss_pred CCeEEEEEEE
Confidence 3566666654
No 99
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=98.53 E-value=0.00066 Score=68.83 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 185 KLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDID 264 (801)
Q Consensus 185 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~ 264 (801)
+++.+..++..+..++.....+....+.+.+....++.....+.+....+...+...+...+.++..+......++..+.
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~ 154 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLK 154 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33434334444444444444444444444444444444444444444444444433333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHH
Q 003711 265 AAHESIKRGEKEKSA 279 (801)
Q Consensus 265 ~l~~~~~~l~~e~~~ 279 (801)
.+..+...+..+...
T Consensus 155 ~l~~qr~ql~aq~qs 169 (499)
T COG4372 155 TLAEQRRQLEAQAQS 169 (499)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 100
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.53 E-value=0.003 Score=68.84 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 395 TKTEFEGQKKLINELRNHLEDAEYKLIE 422 (801)
Q Consensus 395 ~~~~~~~~~~~l~~l~~~l~~l~~~l~~ 422 (801)
.+.++..++.++..++.++..++.++.+
T Consensus 730 ~~~e~~~~qeE~~~l~~r~~~le~e~r~ 757 (961)
T KOG4673|consen 730 NRQEYLAAQEEADTLEGRANQLEVEIRE 757 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555544444
No 101
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.50 E-value=0.0037 Score=68.47 Aligned_cols=20 Identities=15% Similarity=0.547 Sum_probs=12.3
Q ss_pred eeEEEeceecCCCCChhhHH
Q 003711 484 KHSFSFDRVFMPDESQEDVF 503 (801)
Q Consensus 484 ~~~f~fd~v~~~~~~~~~~~ 503 (801)
.+...||++....++--.+|
T Consensus 711 KHK~qYDkiVEEkDaEL~~~ 730 (786)
T PF05483_consen 711 KHKHQYDKIVEEKDAELGLY 730 (786)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 35556677776666555555
No 102
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.50 E-value=0.0092 Score=72.79 Aligned_cols=8 Identities=13% Similarity=0.243 Sum_probs=3.0
Q ss_pred EeCChHHH
Q 003711 624 DVCSTKEV 631 (801)
Q Consensus 624 ~v~s~~e~ 631 (801)
.|+..+++
T Consensus 878 IISH~eel 885 (908)
T COG0419 878 IISHVEEL 885 (908)
T ss_pred EEeChHHH
Confidence 33333333
No 103
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=98.49 E-value=0.0026 Score=66.20 Aligned_cols=96 Identities=17% Similarity=0.251 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHH
Q 003711 318 EVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKT 397 (801)
Q Consensus 318 e~~~l~~el~~l~~~~~~l~~e~~~l~~el~~l~~l~~~l~~le~~~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~ 397 (801)
.+..+...-..++.++.-.......++.-+....+ -......++..+...+..|+.+...+....+.....+..+..
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe---~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~e 279 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNE---VFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAE 279 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444444445555555555555555555555444 555566666666666666666666666666665555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003711 398 EFEGQKKLINELRNHLEDA 416 (801)
Q Consensus 398 ~~~~~~~~l~~l~~~l~~l 416 (801)
+.......+..+..++..|
T Consensus 280 er~~~~~~~~~~~~k~~kL 298 (309)
T PF09728_consen 280 ERQKLEKELEKLKKKIEKL 298 (309)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5544444444444444444
No 104
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.48 E-value=0.0042 Score=68.07 Aligned_cols=9 Identities=22% Similarity=0.320 Sum_probs=3.6
Q ss_pred HHHHHHHhH
Q 003711 90 EDVEALLSE 98 (801)
Q Consensus 90 ~e~~~l~~e 98 (801)
.+-..|.++
T Consensus 141 ~en~dL~k~ 149 (786)
T PF05483_consen 141 QENKDLRKE 149 (786)
T ss_pred hhHHHHHHh
Confidence 334444433
No 105
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=98.46 E-value=0.0022 Score=63.65 Aligned_cols=52 Identities=19% Similarity=0.090 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 136 YAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLA 187 (801)
Q Consensus 136 ~~~e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l~ 187 (801)
|..+++-++...+.++..+.--+..+...+.....++..+..+...|..+++
T Consensus 29 y~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe 80 (305)
T PF14915_consen 29 YLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLE 80 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHH
Confidence 3444444444444444433332222222233333334444433333333333
No 106
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=98.45 E-value=0.0041 Score=70.10 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003711 110 ERCENMMDYIKRLRLCI 126 (801)
Q Consensus 110 ~~ie~l~~~i~~l~~~~ 126 (801)
..++.+..++..+...+
T Consensus 333 ~~~~~~~~e~~~~~~~l 349 (980)
T KOG0980|consen 333 LQIEQLSREVAQLKAQL 349 (980)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 33455555555444444
No 107
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=98.45 E-value=0.00081 Score=62.41 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003711 217 LSEDLGKAQEELQSANQRIAS 237 (801)
Q Consensus 217 l~~el~~l~~~l~~~~~~l~~ 237 (801)
|+..-.++..+...+...+..
T Consensus 13 L~~~n~~L~~en~kL~~~ve~ 33 (193)
T PF14662_consen 13 LQLNNQKLADENAKLQRSVET 33 (193)
T ss_pred HHHHhHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 108
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.0022 Score=68.08 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 003711 364 CASQSNQIRSLSDQLAAAEEKLEV 387 (801)
Q Consensus 364 ~~~l~~~~~~l~~~l~~l~~~l~~ 387 (801)
...++.++..++.+..-+..++++
T Consensus 196 yEglkheikRleEe~elln~q~ee 219 (772)
T KOG0999|consen 196 YEGLKHEIKRLEEETELLNSQLEE 219 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555444
No 109
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.0045 Score=65.83 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003711 280 IVENLSTLRGQYISLQEQLS 299 (801)
Q Consensus 280 l~~~l~~l~~~~~~l~~~l~ 299 (801)
+..++..++.+.+-+..+++
T Consensus 199 lkheikRleEe~elln~q~e 218 (772)
T KOG0999|consen 199 LKHEIKRLEEETELLNSQLE 218 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433333
No 110
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=98.40 E-value=0.0044 Score=64.65 Aligned_cols=65 Identities=11% Similarity=0.064 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 165 EEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQ 229 (801)
Q Consensus 165 i~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~ 229 (801)
++.+......++.....++.-...++.+.......+.++...+...+.++..|+...+.+..++.
T Consensus 297 i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 297 IKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444555555555555555544443
No 111
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.39 E-value=0.005 Score=67.20 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNS 250 (801)
Q Consensus 214 ~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~ 250 (801)
......++.-+-.+++..+..+..++.+...+...+.
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~ 266 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLA 266 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555555555444433
No 112
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.37 E-value=0.009 Score=69.98 Aligned_cols=44 Identities=25% Similarity=0.319 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 139 EHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKL 186 (801)
Q Consensus 139 e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l 186 (801)
+++.++.++..+..+...+..+ +..++.+++.++.++..++..+
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~----i~~l~~ele~a~~~l~~l~~~~ 253 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQE----IAHLRNELEEAQRSLESLEKKF 253 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333 4444444444444444444433
No 113
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.36 E-value=0.0048 Score=69.70 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 003711 373 SLSDQLAAAEEKL 385 (801)
Q Consensus 373 ~l~~~l~~l~~~l 385 (801)
.+..++.++..++
T Consensus 575 ~~~rEirdLe~qI 587 (594)
T PF05667_consen 575 TISREIRDLEEQI 587 (594)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 114
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.35 E-value=0.0037 Score=70.62 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 003711 370 QIRSLSDQLAAAEEKLEV 387 (801)
Q Consensus 370 ~~~~l~~~l~~l~~~l~~ 387 (801)
....++.++..+..++..
T Consensus 513 DTr~lQkeiN~l~gkL~R 530 (594)
T PF05667_consen 513 DTRELQKEINSLTGKLDR 530 (594)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333344444444444443
No 115
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.33 E-value=0.004 Score=65.76 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003711 315 LVHEVASMRVELQQVRDDRDHQLSQVQALTAEVI 348 (801)
Q Consensus 315 l~~e~~~l~~el~~l~~~~~~l~~e~~~l~~el~ 348 (801)
++.++..-+..++++...-..+...+..++.+..
T Consensus 215 l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 215 LNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444433
No 116
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=98.32 E-value=0.021 Score=69.02 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=6.2
Q ss_pred hhhcccCCCcccc
Q 003711 777 VNACEIGTPRRQT 789 (801)
Q Consensus 777 ~~~~~~~~~~~~~ 789 (801)
-.+|++.-|.+..
T Consensus 1071 ~~GIeIPfPq~~v 1083 (1109)
T PRK10929 1071 EHGIDMPFPPFQM 1083 (1109)
T ss_pred HCCCcCCCCCeEE
Confidence 3555554444443
No 117
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=98.32 E-value=0.013 Score=66.37 Aligned_cols=14 Identities=14% Similarity=0.022 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 003711 113 ENMMDYIKRLRLCI 126 (801)
Q Consensus 113 e~l~~~i~~l~~~~ 126 (801)
+.....+..+...+
T Consensus 329 d~~~~~~~~~~~e~ 342 (980)
T KOG0980|consen 329 DPRELQIEQLSREV 342 (980)
T ss_pred ChhhHHHHHHHHHH
Confidence 34444444444444
No 118
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.29 E-value=0.0085 Score=63.36 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003711 110 ERCENMMDYIKRLRLCI 126 (801)
Q Consensus 110 ~~ie~l~~~i~~l~~~~ 126 (801)
.++++...+|..++..+
T Consensus 38 ~~l~q~q~ei~~~~~~i 54 (420)
T COG4942 38 KQLKQIQKEIAALEKKI 54 (420)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555555
No 119
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=0.017 Score=65.21 Aligned_cols=86 Identities=17% Similarity=0.125 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003711 356 SSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTIL 435 (801)
Q Consensus 356 ~l~~le~~~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~e~~~~~l~~~l~ 435 (801)
.+..++.+...+......+..++..+...+........++...+..++..+.....++.++...+.+....+..+.....
T Consensus 525 ~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~ 604 (698)
T KOG0978|consen 525 KIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRK 604 (698)
T ss_pred HHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444555555555555555555555555554444444444
Q ss_pred cccCce
Q 003711 436 ELKGNI 441 (801)
Q Consensus 436 ~l~~~i 441 (801)
.+...+
T Consensus 605 rleEE~ 610 (698)
T KOG0978|consen 605 RLEEEL 610 (698)
T ss_pred HHHHHH
Confidence 444333
No 120
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.22 E-value=4e-09 Score=118.85 Aligned_cols=263 Identities=33% Similarity=0.385 Sum_probs=175.4
Q ss_pred HHHhhhhhhhhcccCceeEEeeeCCCCCCCCCCCC-----------CceEEcCCCccccccceeeecCCceeEEEeceec
Q 003711 425 KLRKRLHNTILELKGNIRVFCRVRPLLPDDSSGSE-----------GKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVF 493 (801)
Q Consensus 425 ~~~~~l~~~l~~l~~~i~~~~r~~~~~~~e~~~~~-----------~~~~~~~~~~~~~~~~i~~~~~~~~~~f~fd~v~ 493 (801)
...+.|++.+.... +++++|+|+|......+--. ...+.+... .........|.||.+|
T Consensus 292 kLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~---------~~~~~~~~~~~~d~~~ 361 (568)
T COG5059 292 KLTRLLQDSLGGNC-NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS---------SDSSREIEEIKFDLSE 361 (568)
T ss_pred HHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc---------CcchHHHHHHHhhhhh
Confidence 34567788888888 99999999997643111000 011111100 0112345679999999
Q ss_pred CCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEE
Q 003711 494 MPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQV 573 (801)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~ 573 (801)
........+|.....+++..++| +++||++++|++++|.-. ..++..-.+...|..+..+....|.+...+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 432 (568)
T COG5059 362 DRSEIEILVFREQSQLSQSSLSG----IFAYMQSLKKETETLKSR-----IDLIMKSIISGTFERKKLLKEEGWKYKSTL 432 (568)
T ss_pred hhhhhhhHHHHHHHhhhhhhhhh----HHHHHhhhhhhhhcccch-----hhhhhhhhhhhhhhhhhhhhhhHHHHHHHH
Confidence 99999999999999999999999 999999999999999532 236666666889998888878888888877
Q ss_pred EEEEEEccceecccCCCccchhhhhccCCCceEEEeCCCCCeEEcccEEEEeCChHHHHHHHHHHhhcCccccCCCCCCC
Q 003711 574 SMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDASGNTHVTDLTVVDVCSTKEVSYLLDRAAHSRSVGKTQMNEQS 653 (801)
Q Consensus 574 S~~ei~~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e~~~~l~~~~~~r~~~~~~~n~~s 653 (801)
-++++|-....+++........... .....++++. ...++. ......+..... .+...+....+..|..+
T Consensus 433 ~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~ 502 (568)
T COG5059 433 QFLRIEIDRLLLLREEELSKKKTKI---HKLNKLRHDL-----SSLLSS-IPEETSDRVESE-KASKLRSSASTKLNLRS 502 (568)
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHH---HHHHHHHHHH-----HHhhhh-cchhhhhhhhhh-hhccchhhcccchhhhh
Confidence 7777773332233221111000000 0000000000 000000 001111111111 56777888999999999
Q ss_pred CCceeEEEEEEeeccCCCCceEEEEEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHH
Q 003711 654 SRSHFVFTLRISGLNESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFAL 720 (801)
Q Consensus 654 srsh~i~~i~i~~~~~~~~~~~~~~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l 720 (801)
+++|++|+.+....+......+ ++.||+||+++. .+.+-+.++++...+|++|..+++++.++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~ 565 (568)
T COG5059 503 SRSHSKFRDHLNGSNSSTKELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHAL 565 (568)
T ss_pred cccchhhhhcccchhhhhHHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhc
Confidence 9999999988877666554444 899999999999 88899999999999999999999999875
No 121
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=98.20 E-value=0.012 Score=61.48 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003711 165 EEELNLIIVELRKSFASLQEKLA 187 (801)
Q Consensus 165 i~~l~~~l~~l~~~l~~l~~~l~ 187 (801)
+..|+.++...+.++..|+....
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d 354 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNID 354 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Confidence 33344444444444444443333
No 122
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=98.20 E-value=0.0068 Score=61.38 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003711 165 EEELNLIIVELRKSFASLQEKLA 187 (801)
Q Consensus 165 i~~l~~~l~~l~~~l~~l~~~l~ 187 (801)
...+...+......+..++.++.
T Consensus 99 ~~~le~~L~~~~e~v~qLrHeL~ 121 (306)
T PF04849_consen 99 NEALEEQLGAALEQVEQLRHELS 121 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 123
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.19 E-value=0.03 Score=65.60 Aligned_cols=9 Identities=22% Similarity=0.637 Sum_probs=4.3
Q ss_pred CceEEEeCC
Q 003711 603 KQYAIKHDA 611 (801)
Q Consensus 603 ~~~~~~~~~ 611 (801)
+.|.+.+++
T Consensus 630 ~~y~l~y~~ 638 (650)
T TIGR03185 630 HEYLLEFDD 638 (650)
T ss_pred hheEEEecC
Confidence 445554443
No 124
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=98.19 E-value=0.0089 Score=59.45 Aligned_cols=45 Identities=18% Similarity=0.218 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 184 EKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEEL 228 (801)
Q Consensus 184 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l 228 (801)
.++..+..+-..+..+++..+.....++.++......+..+-.+.
T Consensus 63 ~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~ 107 (305)
T PF14915_consen 63 GQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDH 107 (305)
T ss_pred hhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334444444444444444444444455555555544444444333
No 125
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.18 E-value=0.0011 Score=64.98 Aligned_cols=6 Identities=50% Similarity=0.628 Sum_probs=2.4
Q ss_pred ecCCCC
Q 003711 492 VFMPDE 497 (801)
Q Consensus 492 v~~~~~ 497 (801)
||-|.+
T Consensus 222 v~CP~C 227 (239)
T COG1579 222 VFCPYC 227 (239)
T ss_pred ccCCcc
Confidence 344433
No 126
>PRK11281 hypothetical protein; Provisional
Probab=98.17 E-value=0.0074 Score=73.06 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 207 RLNMERSHASLSEDLGKAQEELQSANQRIASI 238 (801)
Q Consensus 207 ~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l 238 (801)
+...+..+..++...++.+..+.+...++.++
T Consensus 144 La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI 175 (1113)
T PRK11281 144 LAEYNSQLVSLQTQPERAQAALYANSQRLQQI 175 (1113)
T ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444443333333333
No 127
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=98.17 E-value=0.017 Score=61.99 Aligned_cols=7 Identities=14% Similarity=0.078 Sum_probs=3.1
Q ss_pred ccccccC
Q 003711 58 AFSVVNG 64 (801)
Q Consensus 58 ~~~~~~~ 64 (801)
.|..|+.
T Consensus 64 ~Fe~Wrq 70 (570)
T COG4477 64 KFEEWRQ 70 (570)
T ss_pred HHHHHHH
Confidence 4444444
No 128
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.13 E-value=0.025 Score=62.02 Aligned_cols=13 Identities=38% Similarity=0.455 Sum_probs=6.7
Q ss_pred ccHHHHHHHHhHH
Q 003711 87 FTREDVEALLSEK 99 (801)
Q Consensus 87 ~~~~e~~~l~~e~ 99 (801)
|...+++.|..+.
T Consensus 12 Wk~~dle~LQreL 24 (629)
T KOG0963|consen 12 WKRFDLERLQREL 24 (629)
T ss_pred HHhccHHHHHHHH
Confidence 4455566555443
No 129
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=98.07 E-value=0.066 Score=64.89 Aligned_cols=39 Identities=10% Similarity=0.071 Sum_probs=21.3
Q ss_pred ccEEEEEecCCCCCCHHHHHHHH-HHHHHhhhcccCCCccc
Q 003711 749 SKTLMFVNISPEASSVGESLCSL-RFAARVNACEIGTPRRQ 788 (801)
Q Consensus 749 s~~~~i~~isp~~~~~~etl~tL-~fa~~~~~~~~~~~~~~ 788 (801)
.++.+.+.|+.. .|.+.....| ..+.....|-..|++..
T Consensus 991 ~Rv~i~VgV~Y~-sDie~v~~iL~eaa~~~~~VL~~P~P~V 1030 (1109)
T PRK10929 991 TRVVLTIPAPAD-ANSEEVTEILLTAARRCSLVLDNPAPEV 1030 (1109)
T ss_pred eEEEEEEEeCCC-CCHHHHHHHHHHHHHhCccccCCCCCEE
Confidence 356666677554 4566666655 45555555544444433
No 130
>PRK11281 hypothetical protein; Provisional
Probab=98.05 E-value=0.073 Score=64.74 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=21.7
Q ss_pred ccccccCCCccEEEEEecCCCCCCHHHHHHHHHHH----HHhhhcccCCCccc
Q 003711 740 LLQPCLGGDSKTLMFVNISPEASSVGESLCSLRFA----ARVNACEIGTPRRQ 788 (801)
Q Consensus 740 lL~~~l~g~s~~~~i~~isp~~~~~~etl~tL~fa----~~~~~~~~~~~~~~ 788 (801)
+....||.++-.+.+-+--+...++..+.+-|... -+-.+|++.-|.+.
T Consensus 1033 V~~~~fgdssi~~~lr~wv~~~~~~~~v~s~L~~~I~~~f~e~GIeIpfPq~~ 1085 (1113)
T PRK11281 1033 VFFLNFGASTLDHELRLYVRELGDRSPTVDELNRRIDRLFRENDINIAFNQLD 1085 (1113)
T ss_pred EEEEeccCceEEEEEEEEEcCHhhHHHHHHHHHHHHHHHHHHCCCcCCCCCee
Confidence 33345666554333332222334555555544433 22345555555443
No 131
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.01 E-value=0.0019 Score=63.33 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 237 SINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQY 291 (801)
Q Consensus 237 ~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~ 291 (801)
.+..++..+..........+.+++.+++.+...+..++.+++.+..++..++.++
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei 68 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEI 68 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333333333333333333333
No 132
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=98.01 E-value=0.013 Score=59.38 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 003711 370 QIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILE 436 (801)
Q Consensus 370 ~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~e~~~~~l~~~l~~ 436 (801)
+|..|..++..++.+......+..++...+...+..-..+..++.+++.++.+...++...+.++..
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~ 301 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKT 301 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333334444444444444444444444443333
No 133
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=98.00 E-value=0.084 Score=63.46 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=7.0
Q ss_pred cCCceEEEeec
Q 003711 515 DGYKVCIFAYG 525 (801)
Q Consensus 515 ~G~n~~v~~yG 525 (801)
-|.||.|+|.-
T Consensus 1204 f~snCgvLALD 1214 (1294)
T KOG0962|consen 1204 FGSNCGVLALD 1214 (1294)
T ss_pred Hhhcccccccc
Confidence 46777777643
No 134
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.99 E-value=0.0029 Score=57.65 Aligned_cols=10 Identities=30% Similarity=0.365 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 003711 267 HESIKRGEKE 276 (801)
Q Consensus 267 ~~~~~~l~~e 276 (801)
...+..++.+
T Consensus 114 eRkv~~le~~ 123 (143)
T PF12718_consen 114 ERKVKALEQE 123 (143)
T ss_pred HHHHHHHHhh
Confidence 3333333333
No 135
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.90 E-value=1.4e-05 Score=94.38 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003711 405 LINELRNHLEDAEYKLIEGEKLRKRLHNTIL 435 (801)
Q Consensus 405 ~l~~l~~~l~~l~~~l~~~e~~~~~l~~~l~ 435 (801)
++..++.++..|+.++..+......|..+|.
T Consensus 504 ~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~ 534 (722)
T PF05557_consen 504 ELNELQKEIEELERENERLRQELEELESELE 534 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444
No 136
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=97.90 E-value=0.041 Score=56.56 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 003711 403 KKLINELRNHLEDA 416 (801)
Q Consensus 403 ~~~l~~l~~~l~~l 416 (801)
..+...+......+
T Consensus 226 ~~k~~~l~~~~~~~ 239 (264)
T PF06008_consen 226 EKKKQELSEQQNEV 239 (264)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 137
>PRK09039 hypothetical protein; Validated
Probab=97.88 E-value=0.0028 Score=67.26 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003711 368 SNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDA 416 (801)
Q Consensus 368 ~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 416 (801)
..++..|+.+++.++.++..++..+...+.+..+.+.++.++..++..+
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444443333333344444444444455554444444
No 138
>PRK09039 hypothetical protein; Validated
Probab=97.84 E-value=0.0066 Score=64.44 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=5.6
Q ss_pred ceEEEeeccCCc
Q 003711 518 KVCIFAYGQTGS 529 (801)
Q Consensus 518 n~~v~~yG~tgs 529 (801)
+..|..-|.|.+
T Consensus 262 ~~~I~I~GHTD~ 273 (343)
T PRK09039 262 NWVLRVDGHTDN 273 (343)
T ss_pred CeeEEEEEecCC
Confidence 334444555543
No 139
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.84 E-value=0.072 Score=57.44 Aligned_cols=54 Identities=13% Similarity=0.279 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003711 292 ISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTA 345 (801)
Q Consensus 292 ~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~~e~~~l~~ 345 (801)
..++..++.+...+..++.+...+...+..++++=-+.+..+..+...+..+..
T Consensus 378 S~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR 431 (570)
T COG4477 378 SELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKR 431 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444333
No 140
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.82 E-value=3.9e-06 Score=98.94 Aligned_cols=18 Identities=22% Similarity=0.148 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003711 703 TQAINKSLSSLSDVIFAL 720 (801)
Q Consensus 703 ~~~in~sl~~L~~~i~~l 720 (801)
....++-+.-|..||..-
T Consensus 615 ~~~~ekr~~RLkevf~~k 632 (722)
T PF05557_consen 615 LASAEKRNQRLKEVFKAK 632 (722)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555443
No 141
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.78 E-value=0.039 Score=53.07 Aligned_cols=12 Identities=8% Similarity=0.279 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 003711 407 NELRNHLEDAEY 418 (801)
Q Consensus 407 ~~l~~~l~~l~~ 418 (801)
..+..++..|..
T Consensus 174 ~~l~~ei~~L~~ 185 (194)
T PF15619_consen 174 KSLQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 142
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.76 E-value=0.13 Score=58.23 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003711 109 KERCENMMDYIKRLRLCIKWF 129 (801)
Q Consensus 109 ~~~ie~l~~~i~~l~~~~~~l 129 (801)
+-++.++..++..++..+..+
T Consensus 115 k~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 115 KIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555555444
No 143
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.75 E-value=0.14 Score=59.28 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=10.7
Q ss_pred CCchHHHHHHHHHHHHh
Q 003711 545 KGLIPRSLEQIFQTRQS 561 (801)
Q Consensus 545 ~Gii~r~~~~lf~~~~~ 561 (801)
.|+=|+-=+-+|+.+-.
T Consensus 994 QGMDp~NER~Vh~~mV~ 1010 (1072)
T KOG0979|consen 994 QGMDPRNERKVHDIMVN 1010 (1072)
T ss_pred cCCCchhHHHHHHHHHH
Confidence 46666666666666544
No 144
>PF13514 AAA_27: AAA domain
Probab=97.74 E-value=0.28 Score=61.44 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=22.8
Q ss_pred CCceeEEEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeec
Q 003711 481 NGQKHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYG 525 (801)
Q Consensus 481 ~~~~~~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG 525 (801)
.+....|-+|.+|..-+. .. ...+..++..+-..+-+.+|+|-
T Consensus 1049 ~~~~lP~IlDD~fvnfDd-~R-~~~~l~~L~~ls~~~QVI~FTch 1091 (1111)
T PF13514_consen 1049 QGEPLPFILDDIFVNFDD-ER-ARAALELLAELSRRRQVIYFTCH 1091 (1111)
T ss_pred CCCCCcEEeeCCccccCH-HH-HHHHHHHHHHhccCCeEEEEecc
Confidence 355667888888853221 11 12233455555556666666543
No 145
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.70 E-value=0.068 Score=53.16 Aligned_cols=43 Identities=30% Similarity=0.358 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003711 139 EHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEK 185 (801)
Q Consensus 139 e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~ 185 (801)
+++.|..+++++..+..++..+ +.+++.++..++.+|..+++.
T Consensus 53 ei~~L~~qi~~~~~k~~~~~~~----i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 53 EIESLDNQIEEIQSKIDELQKE----IDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443333333333 333333333333333333333
No 146
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.69 E-value=0.15 Score=59.14 Aligned_cols=10 Identities=10% Similarity=0.368 Sum_probs=6.1
Q ss_pred eEEEeceecC
Q 003711 485 HSFSFDRVFM 494 (801)
Q Consensus 485 ~~f~fd~v~~ 494 (801)
..|.|+++|+
T Consensus 528 ~~lGF~gyls 537 (1072)
T KOG0979|consen 528 KRLGFEGYLS 537 (1072)
T ss_pred HhcChHHHhh
Confidence 3467777664
No 147
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.69 E-value=0.31 Score=60.43 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=13.2
Q ss_pred CCchHHHHHHHHHHHHhhhh
Q 003711 545 KGLIPRSLEQIFQTRQSLLS 564 (801)
Q Consensus 545 ~Gii~r~~~~lf~~~~~~~~ 564 (801)
.|+=+.....++..+..+..
T Consensus 986 ~~lD~~~~~~~~~~l~~l~~ 1005 (1047)
T PRK10246 986 GTLDSETLDTALDALDALNA 1005 (1047)
T ss_pred CcCCHHHHHHHHHHHHHHHH
Confidence 36767777777777666543
No 148
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.66 E-value=0.12 Score=54.87 Aligned_cols=15 Identities=20% Similarity=0.038 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 003711 112 CENMMDYIKRLRLCI 126 (801)
Q Consensus 112 ie~l~~~i~~l~~~~ 126 (801)
++-..--+.+|...+
T Consensus 70 Lely~~~c~EL~~~I 84 (325)
T PF08317_consen 70 LELYQFSCRELKKYI 84 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 149
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.65 E-value=0.031 Score=57.39 Aligned_cols=12 Identities=42% Similarity=0.484 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 003711 284 LSTLRGQYISLQ 295 (801)
Q Consensus 284 l~~l~~~~~~l~ 295 (801)
++.++.++..++
T Consensus 135 LEk~~~q~~qLe 146 (319)
T PF09789_consen 135 LEKLREQIEQLE 146 (319)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 150
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.65 E-value=0.12 Score=54.72 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 003711 108 YKERCENMMDYIKRLRLCIKWFQ 130 (801)
Q Consensus 108 ~~~~ie~l~~~i~~l~~~~~~l~ 130 (801)
|.--+.+|...|.+.+..++.+.
T Consensus 73 y~~~c~EL~~~I~egr~~~~~~E 95 (325)
T PF08317_consen 73 YQFSCRELKKYISEGRQIFEEIE 95 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777766664443
No 151
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.60 E-value=0.045 Score=56.23 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 263 IDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTY 301 (801)
Q Consensus 263 l~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~ 301 (801)
+.+...+...+..++..+...+.+++.++.-+...+...
T Consensus 74 L~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 74 LSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 333444444444444444444444444444444444433
No 152
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.56 E-value=0.069 Score=61.98 Aligned_cols=8 Identities=38% Similarity=0.638 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 003711 319 VASMRVEL 326 (801)
Q Consensus 319 ~~~l~~el 326 (801)
+..|+.++
T Consensus 682 i~~Le~El 689 (769)
T PF05911_consen 682 ISSLEEEL 689 (769)
T ss_pred HHHHHHHH
Confidence 33333333
No 153
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=97.52 E-value=0.26 Score=55.15 Aligned_cols=116 Identities=25% Similarity=0.252 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 143 LRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLG 222 (801)
Q Consensus 143 l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~ 222 (801)
.+.-+..++.+.-.+.-+++.+--+....+..+..++..|++++.....+..-+...++.-...+.--......|..++.
T Consensus 304 ~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELs 383 (739)
T PF07111_consen 304 CQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELS 383 (739)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Confidence 34444555555555555555555556666666777777777777666655555555553322222111122234555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 223 KAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTK 258 (801)
Q Consensus 223 ~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~ 258 (801)
........++++....+..+..+.+.+...+..+..
T Consensus 384 rAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s 419 (739)
T PF07111_consen 384 RAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLES 419 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555556666666666666665555555544433
No 154
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.49 E-value=0.55 Score=58.26 Aligned_cols=30 Identities=10% Similarity=0.115 Sum_probs=13.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 393 LETKTEFEGQKKLINELRNHLEDAEYKLIE 422 (801)
Q Consensus 393 ~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~ 422 (801)
..+...+..+...+..+...+..+...+..
T Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 854 (1047)
T PRK10246 825 EQIQQELAQLAQQLRENTTRQGEIRQQLKQ 854 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 155
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.49 E-value=0.13 Score=51.15 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003711 170 LIIVELRKSFASLQEKLA 187 (801)
Q Consensus 170 ~~l~~l~~~l~~l~~~l~ 187 (801)
..+.+++.....++.+++
T Consensus 38 s~l~~~~~~~~~~q~ei~ 55 (265)
T COG3883 38 SKLSELQKEKKNIQNEIE 55 (265)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 156
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.48 E-value=0.29 Score=62.06 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 165 EEELNLIIVELRKSFASLQEKLAKEESDKLAA 196 (801)
Q Consensus 165 i~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~ 196 (801)
|.+|..++..+..++..+..++..+......+
T Consensus 744 i~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L 775 (1353)
T TIGR02680 744 IAELDARLAAVDDELAELARELRALGARQRAL 775 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444444333333
No 157
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.19 Score=52.78 Aligned_cols=9 Identities=44% Similarity=0.663 Sum_probs=4.2
Q ss_pred HHHHHHHhH
Q 003711 90 EDVEALLSE 98 (801)
Q Consensus 90 ~e~~~l~~e 98 (801)
++++.+...
T Consensus 231 ee~eel~eq 239 (521)
T KOG1937|consen 231 EEVEELTEQ 239 (521)
T ss_pred hhHHHHHhh
Confidence 445555433
No 158
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=97.48 E-value=0.29 Score=54.76 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=15.2
Q ss_pred ccCCcccceeeccCCC-CCCCCCchHHHHHHH
Q 003711 525 GQTGSGKTYTMMGKPG-HPDLKGLIPRSLEQI 555 (801)
Q Consensus 525 G~tgsGKt~tl~G~~~-~~~~~Gii~r~~~~l 555 (801)
+|..+.+++++-+.+. .+...|-+.-.+++|
T Consensus 677 ~~~~~s~~~~~~~~~~~r~~~~gsl~~ll~dL 708 (739)
T PF07111_consen 677 RPPESSKPASLPAAFPTRESTKGSLSVLLDDL 708 (739)
T ss_pred CCCccccCCCCCCCCCCccccCCCHHHHHHHH
Confidence 4456667777644432 223455544444443
No 159
>PF13514 AAA_27: AAA domain
Probab=97.45 E-value=0.66 Score=58.21 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHhhcCCce
Q 003711 499 QEDVFVEISQLVQSALDGYKV 519 (801)
Q Consensus 499 ~~~~~~~~~~~v~~~~~G~n~ 519 (801)
+..|....+.+...+..|.-.
T Consensus 978 ~p~vl~~As~~f~~LT~G~Y~ 998 (1111)
T PF13514_consen 978 QPPVLARASEYFSRLTGGRYS 998 (1111)
T ss_pred hHHHHHHHHHHHHHHhCCCCc
Confidence 444444455555555565443
No 160
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.42 E-value=0.18 Score=51.17 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003711 112 CENMMDYIKRLRLCIKWFQELEGDYAFEHERLRN 145 (801)
Q Consensus 112 ie~l~~~i~~l~~~~~~l~~~~~~~~~e~~~l~~ 145 (801)
+..+..+...|+..+...+.....+..++..++.
T Consensus 29 ~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~ 62 (310)
T PF09755_consen 29 IESLQQENRVLKRELETEKARCKHLQEENRALRE 62 (310)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333333333333333333
No 161
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=97.37 E-value=0.19 Score=50.26 Aligned_cols=105 Identities=13% Similarity=0.181 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 003711 336 QLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLED 415 (801)
Q Consensus 336 l~~e~~~l~~el~~l~~l~~~l~~le~~~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 415 (801)
......+++.-+....+ -......++..+...+..++.+--.++...+..+..+..+..+-......+..++.++..
T Consensus 227 Y~aKyeefq~tl~KSNE---~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~ 303 (391)
T KOG1850|consen 227 YMAKYEEFQTTLAKSNE---LFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQR 303 (391)
T ss_pred HHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33344444444443333 455555666677777777777777777777777777777877777788888889999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccCceeE
Q 003711 416 AEYKLIEGEKLRKRLHNTILELKGNIRV 443 (801)
Q Consensus 416 l~~~l~~~e~~~~~l~~~l~~l~~~i~~ 443 (801)
|+.-+..+...+..+...+.++.+++.+
T Consensus 304 LekLcRALq~ernel~~~~~~~e~~v~~ 331 (391)
T KOG1850|consen 304 LEKLCRALQTERNELNKKLEDLEAQVSA 331 (391)
T ss_pred HHHHHHHHHhccccHHHHHHHHhcccch
Confidence 9888888888888898888888888776
No 162
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.37 E-value=0.64 Score=56.26 Aligned_cols=15 Identities=7% Similarity=0.532 Sum_probs=8.6
Q ss_pred eeEEEeceecCCCCC
Q 003711 484 KHSFSFDRVFMPDES 498 (801)
Q Consensus 484 ~~~f~fd~v~~~~~~ 498 (801)
.++|.+--|+....+
T Consensus 1162 ~rsYnyrVv~~kgd~ 1176 (1294)
T KOG0962|consen 1162 RRTYNYRVVMVKGDT 1176 (1294)
T ss_pred ccccceeEEEEechH
Confidence 356666667654433
No 163
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.49 Score=54.17 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=28.8
Q ss_pred CCceeEEEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccC
Q 003711 481 NGQKHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQT 527 (801)
Q Consensus 481 ~~~~~~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~t 527 (801)
...+-.|-||.+|..= ++.. ...+..++....+|+-+..|+|-+-
T Consensus 924 ~~~~LP~i~DD~fVhF-D~~R-~~r~~e~l~dls~~~QviYFTCHe~ 968 (984)
T COG4717 924 TREPLPFIADDIFVHF-DDER-AKRMLELLADLSEGNQVIYFTCHEH 968 (984)
T ss_pred cCCCCCeeeccchhcc-CHHH-HHHHHHHHHHhccCCeEEEEEechh
Confidence 3455678888888432 1111 1225567788888999999987753
No 164
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.32 E-value=0.24 Score=50.34 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003711 113 ENMMDYIKRLRLCIKWFQEL 132 (801)
Q Consensus 113 e~l~~~i~~l~~~~~~l~~~ 132 (801)
+.+...+..|....+.++..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~E 42 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRE 42 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHH
Confidence 55555666555555444333
No 165
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=97.32 E-value=0.17 Score=48.69 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 003711 108 YKERCENMMDYIKRLRL 124 (801)
Q Consensus 108 ~~~~ie~l~~~i~~l~~ 124 (801)
|+..+.++.+++.+++.
T Consensus 25 ykq~f~~~reEl~EFQe 41 (333)
T KOG1853|consen 25 YKQHFLQMREELNEFQE 41 (333)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 55666665555554443
No 166
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.25 E-value=0.68 Score=54.05 Aligned_cols=140 Identities=16% Similarity=0.179 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 003711 138 FEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREK-ETRLNMERSHAS 216 (801)
Q Consensus 138 ~e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 216 (801)
.+...|+.+++....+...++.+ +..|...+++.-+++...+++-+..- .+......... .....++..+..
T Consensus 24 ~e~~~lk~~l~~~~~~~~~~e~r----~~hld~aLkec~~qlr~~ree~eq~i---~~~~~~~s~e~e~~~~~le~~l~e 96 (769)
T PF05911_consen 24 AEAASLKQQLEAATQQKLALEDR----VSHLDGALKECMRQLRQVREEQEQKI---HEAVAKKSKEWEKIKSELEAKLAE 96 (769)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH----hhhhhHHHHHHHHHHHHhhHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33444445555444444444444 55555555555555555544433211 11111111111 111245555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 217 LSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENL 284 (801)
Q Consensus 217 l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l 284 (801)
+..++..+..+...+...+......+..+.+.....+.++..+...++.++++...|+-++.-+.+++
T Consensus 97 ~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 97 LSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555444444445555555444444444444444444444444444444444333
No 167
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.21 E-value=0.62 Score=52.77 Aligned_cols=15 Identities=7% Similarity=0.208 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHH
Q 003711 108 YKERCENMMDYIKRL 122 (801)
Q Consensus 108 ~~~~ie~l~~~i~~l 122 (801)
+..++..+...+..+
T Consensus 121 ~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 121 LDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444455555554
No 168
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.21 E-value=0.37 Score=50.23 Aligned_cols=15 Identities=27% Similarity=0.049 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 003711 112 CENMMDYIKRLRLCI 126 (801)
Q Consensus 112 ie~l~~~i~~l~~~~ 126 (801)
++-..--+++|...+
T Consensus 65 LElY~~sC~EL~~~I 79 (312)
T smart00787 65 LELYQFSCKELKKYI 79 (312)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444444
No 169
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=97.19 E-value=0.059 Score=52.65 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 213 SHASLSEDLGKAQEELQSANQRIASINDMYKL 244 (801)
Q Consensus 213 ~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~ 244 (801)
.|.+++.+++.|+.+...-+-+++.++..+..
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqK 50 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQK 50 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444444444444444444433333
No 170
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.18 E-value=0.62 Score=52.19 Aligned_cols=8 Identities=13% Similarity=-0.180 Sum_probs=3.1
Q ss_pred ChHHHHHH
Q 003711 627 STKEVSYL 634 (801)
Q Consensus 627 s~~e~~~~ 634 (801)
|+.-|+..
T Consensus 697 siPaFlaa 704 (716)
T KOG4593|consen 697 SIPAFLAA 704 (716)
T ss_pred CchHHHHH
Confidence 33334333
No 171
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.48 Score=49.98 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003711 400 EGQKKLINELRNHLEDA 416 (801)
Q Consensus 400 ~~~~~~l~~l~~~l~~l 416 (801)
+.+...+..++.....|
T Consensus 498 Ekl~~Dyqairqen~~L 514 (521)
T KOG1937|consen 498 EKLHQDYQAIRQENDQL 514 (521)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444433
No 172
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=97.11 E-value=0.54 Score=52.41 Aligned_cols=10 Identities=20% Similarity=0.235 Sum_probs=4.4
Q ss_pred cccccccccC
Q 003711 737 LTYLLQPCLG 746 (801)
Q Consensus 737 LT~lL~~~l~ 746 (801)
-++...+..+
T Consensus 850 wrk~f~~~~~ 859 (916)
T KOG0249|consen 850 WRKSFRPKEG 859 (916)
T ss_pred ccccCCcccC
Confidence 3444444443
No 173
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.09 E-value=0.48 Score=49.41 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 165 EEELNLIIVELRKSFASLQEKLAKEESDK 193 (801)
Q Consensus 165 i~~l~~~l~~l~~~l~~l~~~l~~l~~~~ 193 (801)
++-..-...+|...|..-+.-+..++.+.
T Consensus 65 LElY~~sC~EL~~~I~egr~~~~~~E~et 93 (312)
T smart00787 65 LELYQFSCKELKKYISEGRDLFKEIEEET 93 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777777666666555443
No 174
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.08 E-value=0.32 Score=55.98 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=12.9
Q ss_pred CCchHHHHHHHHHHHHhh
Q 003711 545 KGLIPRSLEQIFQTRQSL 562 (801)
Q Consensus 545 ~Gii~r~~~~lf~~~~~~ 562 (801)
.|+=+.....+...+..+
T Consensus 473 ~gld~~~~~~~~~~l~~l 490 (563)
T TIGR00634 473 VGVSGETAQAIAKKLAQL 490 (563)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 477777777777777664
No 175
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.06 E-value=0.21 Score=55.54 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 398 EFEGQKKLINELRNHLEDAEYKLI 421 (801)
Q Consensus 398 ~~~~~~~~l~~l~~~l~~l~~~l~ 421 (801)
++.....++..++.++..++..+.
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555655555555443
No 176
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=97.01 E-value=0.35 Score=46.33 Aligned_cols=6 Identities=17% Similarity=0.346 Sum_probs=2.1
Q ss_pred HHHHHH
Q 003711 224 AQEELQ 229 (801)
Q Consensus 224 l~~~l~ 229 (801)
++..+.
T Consensus 18 lk~~l~ 23 (177)
T PF13870_consen 18 LKHQLA 23 (177)
T ss_pred HHHHHH
Confidence 333333
No 177
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=97.00 E-value=0.37 Score=46.52 Aligned_cols=148 Identities=14% Similarity=0.175 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 143 LRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLG 222 (801)
Q Consensus 143 l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~ 222 (801)
.+.++.+.+.--.+++.++..++..++.....++.....+..++..++...... .. +.-.....|+.++.
T Consensus 32 ~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q---~~-------q~y~q~s~Leddls 101 (333)
T KOG1853|consen 32 MREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQ---RV-------QFYQQESQLEDDLS 101 (333)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-------HHHHHHHHHHHHHH
Confidence 333444444444444444444455555555555554444444443332221111 11 11122223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 003711 223 KAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIV---ENLSTLRGQYISLQEQLS 299 (801)
Q Consensus 223 ~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~---~~l~~l~~~~~~l~~~l~ 299 (801)
......+.+.+.|.+|+...+.|........-.+..+++.+....+...-|+.++.+.+ ..+..|+.+...|.++++
T Consensus 102 qt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 102 QTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444333333333332233334445555555555555555544333 334455555556666654
Q ss_pred H
Q 003711 300 T 300 (801)
Q Consensus 300 ~ 300 (801)
-
T Consensus 182 v 182 (333)
T KOG1853|consen 182 V 182 (333)
T ss_pred H
Confidence 3
No 178
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.97 E-value=0.14 Score=61.41 Aligned_cols=26 Identities=19% Similarity=-0.017 Sum_probs=17.1
Q ss_pred HHHhhc--CCceEEEeeccCCcccceee
Q 003711 510 VQSALD--GYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 510 v~~~~~--G~n~~v~~yG~tgsGKt~tl 535 (801)
+..+.. +..+..|+-+..|.|||++-
T Consensus 537 l~~~~~~~~~kvi~vts~~~G~GKTt~a 564 (754)
T TIGR01005 537 VAEAKSVAEPEVVETQRPRPVLGKSDIE 564 (754)
T ss_pred HhhhccCCCceEEEeecCCCCCChhHHH
Confidence 443443 34566777778888998865
No 179
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.91 E-value=0.29 Score=55.68 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=12.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q 003711 392 ALETKTEFEGQKKLINELRNHLEDA 416 (801)
Q Consensus 392 ~~~~~~~~~~~~~~l~~l~~~l~~l 416 (801)
+..+..+++..+..+..+..++++.
T Consensus 357 l~~L~Re~~~~~~~Y~~l~~r~eea 381 (498)
T TIGR03007 357 LTQLNRDYEVNKSNYEQLLTRRESA 381 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555544
No 180
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=96.90 E-value=0.75 Score=51.36 Aligned_cols=6 Identities=17% Similarity=0.683 Sum_probs=2.3
Q ss_pred HHHHHH
Q 003711 552 LEQIFQ 557 (801)
Q Consensus 552 ~~~lf~ 557 (801)
+..+|.
T Consensus 526 i~r~f~ 531 (916)
T KOG0249|consen 526 IGRLFG 531 (916)
T ss_pred HHHHHh
Confidence 333443
No 181
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.89 E-value=0.38 Score=53.51 Aligned_cols=12 Identities=17% Similarity=-0.211 Sum_probs=6.9
Q ss_pred HhhcCCceEEEe
Q 003711 512 SALDGYKVCIFA 523 (801)
Q Consensus 512 ~~~~G~n~~v~~ 523 (801)
.+-.|..+.|..
T Consensus 323 ~i~~G~~v~v~~ 334 (423)
T TIGR01843 323 FVHVGQPAEIKF 334 (423)
T ss_pred hhCCCCceEEEE
Confidence 344677776643
No 182
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.84 E-value=0.3 Score=55.56 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 356 SSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEK 425 (801)
Q Consensus 356 ~l~~le~~~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~e~ 425 (801)
.+..++.++..++.++..++.++..++.++.. +.....++..+..+.+..+..+..+..++++.+.
T Consensus 318 ~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~----~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 318 ELAEAEAEIASLEARVAELTARIERLESLLRT----IPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444432 3355677788888888888888888777766554
No 183
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.79 E-value=0.84 Score=47.48 Aligned_cols=11 Identities=18% Similarity=0.081 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 003711 142 RLRNALELSEQ 152 (801)
Q Consensus 142 ~l~~~l~~~~~ 152 (801)
.|...+..+.+
T Consensus 47 ~l~~rv~slsq 57 (552)
T KOG2129|consen 47 SLGARVSSLSQ 57 (552)
T ss_pred HHHHHHHHHHh
Confidence 33333443333
No 184
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.74 E-value=0.28 Score=58.91 Aligned_cols=21 Identities=10% Similarity=-0.026 Sum_probs=12.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHh
Q 003711 757 ISPEASSVGESLCSLRFAARV 777 (801)
Q Consensus 757 isp~~~~~~etl~tL~fa~~~ 777 (801)
+.+..........++.....+
T Consensus 686 ~~~~~~~~~~~~~~~~~l~~~ 706 (754)
T TIGR01005 686 TAYDRVVVECGRADAQGISRL 706 (754)
T ss_pred EEeCceeHHHHHHHHHHHHhc
Confidence 456666666666666555543
No 185
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.69 E-value=3.3 Score=52.86 Aligned_cols=11 Identities=18% Similarity=-0.167 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 003711 710 LSSLSDVIFAL 720 (801)
Q Consensus 710 l~~L~~~i~~l 720 (801)
...|...|..+
T Consensus 1191 ~~~~~~~i~~~ 1201 (1353)
T TIGR02680 1191 GEFLQQRIERA 1201 (1353)
T ss_pred HHHHHHHHHHH
Confidence 34455555554
No 186
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=96.68 E-value=0.64 Score=44.50 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 165 EEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLA 201 (801)
Q Consensus 165 i~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~ 201 (801)
+..++.+...+...++.-..++..+..........+.
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~ 80 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILT 80 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433333333333
No 187
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=96.57 E-value=0.98 Score=45.38 Aligned_cols=16 Identities=6% Similarity=0.252 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhHHHH
Q 003711 321 SMRVELQQVRDDRDHQ 336 (801)
Q Consensus 321 ~l~~el~~l~~~~~~l 336 (801)
.+..+++.+...+..+
T Consensus 247 ~fK~E~ekmtKk~kkl 262 (391)
T KOG1850|consen 247 KFKQEMEKMTKKIKKL 262 (391)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 188
>PLN02939 transferase, transferring glycosyl groups
Probab=96.52 E-value=2.8 Score=50.06 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 269 SIKRGEKEKSAIVENLSTLRGQYISLQ 295 (801)
Q Consensus 269 ~~~~l~~e~~~l~~~l~~l~~~~~~l~ 295 (801)
.+-.++++..-+...+.+++..+-..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (977)
T PLN02939 258 RVFKLEKERSLLDASLRELESKFIVAQ 284 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344445555555555555555444333
No 189
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=96.30 E-value=2.8 Score=47.67 Aligned_cols=44 Identities=20% Similarity=0.149 Sum_probs=23.9
Q ss_pred EEEEEecCCCccccCCCCccccchHHHHHHHHHHHHHHHHHHHh
Q 003711 678 ILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALA 721 (801)
Q Consensus 678 ~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~ 721 (801)
.+++=++.+...|+-+...-...++-..+...|.+|-.-|..|-
T Consensus 808 f~~~d~~s~~s~wS~ss~stfts~de~~f~~glaalda~iarlq 851 (861)
T PF15254_consen 808 FSNSDLMSGKSDWSISSFSTFTSRDEQDFRNGLAALDANIARLQ 851 (861)
T ss_pred ccccchhccccccccccccccccccHHHHHhhHHHhhhhHHHHH
Confidence 34443343444444443333344555666777888877776664
No 190
>PRK10869 recombination and repair protein; Provisional
Probab=96.25 E-value=3.1 Score=47.65 Aligned_cols=18 Identities=11% Similarity=0.073 Sum_probs=13.5
Q ss_pred CCchHHHHHHHHHHHHhh
Q 003711 545 KGLIPRSLEQIFQTRQSL 562 (801)
Q Consensus 545 ~Gii~r~~~~lf~~~~~~ 562 (801)
.|+=+.+...++..+..+
T Consensus 463 ~gld~~~~~~v~~~l~~l 480 (553)
T PRK10869 463 VGISGPTAAVVGKLLRQL 480 (553)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 477778888788777765
No 191
>PRK10869 recombination and repair protein; Provisional
Probab=96.24 E-value=3.1 Score=47.60 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=15.9
Q ss_pred eeEEEeceecCCCCChhhHHHHHHHHHHHhhcC
Q 003711 484 KHSFSFDRVFMPDESQEDVFVEISQLVQSALDG 516 (801)
Q Consensus 484 ~~~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G 516 (801)
...+-||.+...=+. .....|..++..+-.+
T Consensus 453 ~~~li~DEpd~gld~--~~~~~v~~~l~~l~~~ 483 (553)
T PRK10869 453 TPALIFDEVDVGISG--PTAAVVGKLLRQLGES 483 (553)
T ss_pred CCEEEEECCCCCCCH--HHHHHHHHHHHHHhcC
Confidence 456777776533221 2223355666666444
No 192
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=96.22 E-value=1.3 Score=44.86 Aligned_cols=18 Identities=22% Similarity=0.545 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003711 403 KKLINELRNHLEDAEYKL 420 (801)
Q Consensus 403 ~~~l~~l~~~l~~l~~~l 420 (801)
+.-|..++.++.+|.-++
T Consensus 200 Q~yI~~LEsKVqDLm~Ei 217 (401)
T PF06785_consen 200 QAYIGKLESKVQDLMYEI 217 (401)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555554444
No 193
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=96.22 E-value=1 Score=49.49 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=13.2
Q ss_pred CchHHHHHHHHHHHHhh
Q 003711 546 GLIPRSLEQIFQTRQSL 562 (801)
Q Consensus 546 Gii~r~~~~lf~~~~~~ 562 (801)
.--++.+..||..+...
T Consensus 486 er~~rglrnifgKlrRS 502 (861)
T KOG1899|consen 486 ERTRRGLRNIFGKLRRS 502 (861)
T ss_pred ccchhHHHHHHHHhhhc
Confidence 44678899999988763
No 194
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.19 E-value=4.1 Score=48.50 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 003711 114 NMMDYIKRLRLCIK 127 (801)
Q Consensus 114 ~l~~~i~~l~~~~~ 127 (801)
++-.+|.+|+..+.
T Consensus 408 d~~~EIerLK~dl~ 421 (1041)
T KOG0243|consen 408 DLYEEIERLKRDLA 421 (1041)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 195
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.11 E-value=0.14 Score=53.67 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=5.1
Q ss_pred cccceeeccCC
Q 003711 529 SGKTYTMMGKP 539 (801)
Q Consensus 529 sGKt~tl~G~~ 539 (801)
.+.+|.+||+.
T Consensus 215 ~~~~~~ly~~~ 225 (314)
T PF04111_consen 215 DKTTYPLYSSG 225 (314)
T ss_dssp TCEEEESS--S
T ss_pred CCeEEecccCC
Confidence 45666666653
No 196
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=95.99 E-value=1.7 Score=42.27 Aligned_cols=11 Identities=0% Similarity=0.238 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 003711 270 IKRGEKEKSAI 280 (801)
Q Consensus 270 ~~~l~~e~~~l 280 (801)
+.+|.++++.+
T Consensus 266 m~eLdedVEgm 276 (330)
T KOG2991|consen 266 MEELDEDVEGM 276 (330)
T ss_pred HHHHHHHHhcc
Confidence 33333333333
No 197
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=95.99 E-value=1.9 Score=47.49 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=5.3
Q ss_pred ecCCCCChhhHH
Q 003711 492 VFMPDESQEDVF 503 (801)
Q Consensus 492 v~~~~~~~~~~~ 503 (801)
+.++.+.|+.-|
T Consensus 399 ~lpp~~~~d~pf 410 (861)
T KOG1899|consen 399 PLPPAARQDAPF 410 (861)
T ss_pred CCCCCccccchh
Confidence 334444444444
No 198
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.99 E-value=0.17 Score=52.97 Aligned_cols=8 Identities=50% Similarity=0.974 Sum_probs=1.6
Q ss_pred EEeceecC
Q 003711 487 FSFDRVFM 494 (801)
Q Consensus 487 f~fd~v~~ 494 (801)
|.+.+.|.
T Consensus 227 ~~~~~~f~ 234 (314)
T PF04111_consen 227 FSLGRLFS 234 (314)
T ss_dssp ----GGG-
T ss_pred chhhhhhh
Confidence 44445554
No 199
>PLN02939 transferase, transferring glycosyl groups
Probab=95.95 E-value=5.5 Score=47.75 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 003711 367 QSNQIRSLSDQLAAA 381 (801)
Q Consensus 367 l~~~~~~l~~~l~~l 381 (801)
.+..+..++..+..+
T Consensus 381 ~~~~~~~~~~~~~~~ 395 (977)
T PLN02939 381 YQESIKEFQDTLSKL 395 (977)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 200
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.95 E-value=2.6 Score=44.04 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH
Q 003711 112 CENMMDYIKRLRLCI 126 (801)
Q Consensus 112 ie~l~~~i~~l~~~~ 126 (801)
.+.+...+..|...-
T Consensus 45 ~e~l~~rv~slsq~N 59 (552)
T KOG2129|consen 45 GESLGARVSSLSQRN 59 (552)
T ss_pred HHHHHHHHHHHHhhh
Confidence 677777777766655
No 201
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.92 E-value=3.2 Score=46.51 Aligned_cols=17 Identities=18% Similarity=-0.060 Sum_probs=11.5
Q ss_pred HHHHhhcCCceEEEeec
Q 003711 509 LVQSALDGYKVCIFAYG 525 (801)
Q Consensus 509 ~v~~~~~G~n~~v~~yG 525 (801)
.+..+-.|..+.|...+
T Consensus 368 di~~v~~Gq~V~v~~~a 384 (457)
T TIGR01000 368 DISGIKVGQKVRFKLTQ 384 (457)
T ss_pred HHhhcCCCCeEEEEEec
Confidence 45666778888876544
No 202
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.91 E-value=2.8 Score=44.13 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 270 IKRGEKEKSAIVENLSTLRGQYISL 294 (801)
Q Consensus 270 ~~~l~~e~~~l~~~l~~l~~~~~~l 294 (801)
+..++++.....+-+.++..++..+
T Consensus 362 Lrrfq~ekeatqELieelrkelehl 386 (502)
T KOG0982|consen 362 LRRFQEEKEATQELIEELRKELEHL 386 (502)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3334444333333344444333333
No 203
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=95.91 E-value=1.8 Score=42.03 Aligned_cols=53 Identities=8% Similarity=0.140 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003711 292 ISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALT 344 (801)
Q Consensus 292 ~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~~e~~~l~ 344 (801)
++++...+++-.-+.++...++..+..+--|++++++.+.++..+...+..+.
T Consensus 253 eElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~s 305 (330)
T KOG2991|consen 253 EELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVS 305 (330)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444555555555544444444444333
No 204
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=95.85 E-value=1.9 Score=42.67 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003711 112 CENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAE 156 (801)
Q Consensus 112 ie~l~~~i~~l~~~~~~l~~~~~~~~~e~~~l~~~l~~~~~~~~~ 156 (801)
+.+.+--|..|+.++++-.....+-..||..|+.++..++.++-+
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIE 107 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIE 107 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444333333344455556666666555554433
No 205
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.83 E-value=0.77 Score=48.56 Aligned_cols=11 Identities=36% Similarity=0.561 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 003711 370 QIRSLSDQLAA 380 (801)
Q Consensus 370 ~~~~l~~~l~~ 380 (801)
++..|++++..
T Consensus 436 ~I~dLqEQlrD 446 (493)
T KOG0804|consen 436 KITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 206
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.73 E-value=8.3 Score=48.23 Aligned_cols=7 Identities=29% Similarity=0.391 Sum_probs=3.1
Q ss_pred ccEEEEE
Q 003711 749 SKTLMFV 755 (801)
Q Consensus 749 s~~~~i~ 755 (801)
+++++|+
T Consensus 1010 g~~i~ii 1016 (1042)
T TIGR00618 1010 SKMIGII 1016 (1042)
T ss_pred CCEEEEE
Confidence 4444444
No 207
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.72 E-value=3.3 Score=43.58 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 003711 172 IVELRKSFASLQEK 185 (801)
Q Consensus 172 l~~l~~~l~~l~~~ 185 (801)
.-.+......|++.
T Consensus 252 nlqLvhR~h~LEEq 265 (502)
T KOG0982|consen 252 NLQLVHRYHMLEEQ 265 (502)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 208
>PF13166 AAA_13: AAA domain
Probab=95.71 E-value=5.7 Score=47.55 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 003711 378 LAAAEEKLE 386 (801)
Q Consensus 378 l~~l~~~l~ 386 (801)
.+.+...+.
T Consensus 461 ~~~iN~~L~ 469 (712)
T PF13166_consen 461 ADRINEELK 469 (712)
T ss_pred HHHHHHHHH
Confidence 333333333
No 209
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.70 E-value=3.5 Score=43.63 Aligned_cols=6 Identities=33% Similarity=0.080 Sum_probs=2.1
Q ss_pred HHHHHH
Q 003711 168 LNLIIV 173 (801)
Q Consensus 168 l~~~l~ 173 (801)
++..+.
T Consensus 178 lEe~ie 183 (446)
T KOG4438|consen 178 LEENIE 183 (446)
T ss_pred HHHHHH
Confidence 333333
No 210
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.68 E-value=2.1 Score=40.95 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 003711 165 EEELNLIIVELRKSF 179 (801)
Q Consensus 165 i~~l~~~l~~l~~~l 179 (801)
|-.|+..+.+....+
T Consensus 33 iv~Lr~ql~e~~~~l 47 (202)
T PF06818_consen 33 IVSLRAQLRELRAEL 47 (202)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 211
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.66 E-value=0.95 Score=47.93 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 003711 405 LINELRNHLEDAE 417 (801)
Q Consensus 405 ~l~~l~~~l~~l~ 417 (801)
++.++++++.+|.
T Consensus 436 ~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 436 KITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHhHh
Confidence 3444444444443
No 212
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.64 E-value=3.2 Score=46.41 Aligned_cols=19 Identities=5% Similarity=0.193 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003711 398 EFEGQKKLINELRNHLEDA 416 (801)
Q Consensus 398 ~~~~~~~~l~~l~~~l~~l 416 (801)
+++..+..+..+-.+.++.
T Consensus 350 ~~~~~~~~y~~ll~r~~e~ 368 (444)
T TIGR03017 350 DVENAQRAYDAAMQRYTQT 368 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443
No 213
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=95.62 E-value=5.6 Score=45.42 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003711 215 ASLSEDLGKAQEELQSANQRIAS 237 (801)
Q Consensus 215 ~~l~~el~~l~~~l~~~~~~l~~ 237 (801)
.-|+.+...|...+.-+++++.+
T Consensus 390 QplrsENaqLrRrLrilnqqlre 412 (861)
T PF15254_consen 390 QPLRSENAQLRRRLRILNQQLRE 412 (861)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 214
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.45 E-value=0.031 Score=60.26 Aligned_cols=88 Identities=30% Similarity=0.425 Sum_probs=58.6
Q ss_pred EEEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceeecc---CCCCCCCCCch----HHHHHHHHHH
Q 003711 486 SFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMG---KPGHPDLKGLI----PRSLEQIFQT 558 (801)
Q Consensus 486 ~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~G---~~~~~~~~Gii----~r~~~~lf~~ 558 (801)
.|....-|.|.-+|. ..|..||+.+-.|...-++ .|.|||||||||-- ...-| .+| --...+||..
T Consensus 4 ~F~l~s~f~PaGDQP---~AI~~Lv~gi~~g~~~QtL-LGvTGSGKTfT~AnVI~~~~rP---tLV~AhNKTLAaQLy~E 76 (663)
T COG0556 4 PFKLHSPFKPAGDQP---EAIAELVEGIENGLKHQTL-LGVTGSGKTFTMANVIAKVQRP---TLVLAHNKTLAAQLYSE 76 (663)
T ss_pred ceEeccCCCCCCCcH---HHHHHHHHHHhcCceeeEE-eeeccCCchhHHHHHHHHhCCC---eEEEecchhHHHHHHHH
Confidence 466666676665554 4567788888888777665 69999999999931 11111 111 1234567776
Q ss_pred HHhhhhcCCeeeEEEEEEEEEcc
Q 003711 559 RQSLLSQGWKYEMQVSMLEIYNE 581 (801)
Q Consensus 559 ~~~~~~~~~~~~v~~S~~ei~~e 581 (801)
..++ .+...+.++|||+..|.-
T Consensus 77 fk~f-FP~NaVEYFVSYYDYYQP 98 (663)
T COG0556 77 FKEF-FPENAVEYFVSYYDYYQP 98 (663)
T ss_pred HHHh-CcCcceEEEeeeccccCc
Confidence 6664 677788999999988853
No 215
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.34 E-value=6.3 Score=44.21 Aligned_cols=29 Identities=7% Similarity=0.205 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003711 359 DLEARCASQSNQIRSLSDQLAAAEEKLEV 387 (801)
Q Consensus 359 ~le~~~~~l~~~~~~l~~~l~~l~~~l~~ 387 (801)
....++...+.++..++..+...+..+..
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44445555566666666666666666655
No 216
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=95.29 E-value=3.9 Score=41.58 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003711 402 QKKLINELRNHLEDAEYKLIEGEKLRKRLH 431 (801)
Q Consensus 402 ~~~~l~~l~~~l~~l~~~l~~~e~~~~~l~ 431 (801)
...-++.-+..+..|+.++.++--+.+.+.
T Consensus 192 q~~ml~kRQ~yI~~LEsKVqDLm~EirnLL 221 (401)
T PF06785_consen 192 QHSMLDKRQAYIGKLESKVQDLMYEIRNLL 221 (401)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666666666555544443
No 217
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=95.09 E-value=1.6 Score=46.45 Aligned_cols=12 Identities=33% Similarity=0.385 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 003711 255 YNTKLQKDIDAA 266 (801)
Q Consensus 255 ~~~~l~~el~~l 266 (801)
.+.+|+.++..+
T Consensus 336 Al~kLk~EI~qM 347 (359)
T PF10498_consen 336 ALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHh
Confidence 333444444433
No 218
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=95.03 E-value=5.1 Score=42.92 Aligned_cols=84 Identities=26% Similarity=0.228 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 003711 355 VSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTI 434 (801)
Q Consensus 355 ~~l~~le~~~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~e~~~~~l~~~l 434 (801)
..+..++..+...+..+...+.++..+...+..+...+.....+...+..++...+.++.....-+..+..++..+...+
T Consensus 221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~ 300 (344)
T PF12777_consen 221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQI 300 (344)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHH
Confidence 34444444444444444444444444444444444444444444444444455455555544444444444444454444
Q ss_pred hccc
Q 003711 435 LELK 438 (801)
Q Consensus 435 ~~l~ 438 (801)
..+.
T Consensus 301 ~~l~ 304 (344)
T PF12777_consen 301 EELE 304 (344)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 219
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.90 E-value=1.8 Score=42.95 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 003711 319 VASMRVELQQVRDDRDHQLSQ 339 (801)
Q Consensus 319 ~~~l~~el~~l~~~~~~l~~e 339 (801)
+..+..++..++.+++.+..+
T Consensus 83 i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 83 IQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443
No 220
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.90 E-value=1.6 Score=43.16 Aligned_cols=6 Identities=0% Similarity=-0.258 Sum_probs=2.3
Q ss_pred ccCCcc
Q 003711 525 GQTGSG 530 (801)
Q Consensus 525 G~tgsG 530 (801)
|++..+
T Consensus 176 ~~~~~~ 181 (230)
T PF10146_consen 176 HPSFES 181 (230)
T ss_pred CCCCCC
Confidence 443333
No 221
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.85 E-value=4.2 Score=39.62 Aligned_cols=8 Identities=13% Similarity=0.489 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 003711 218 SEDLGKAQ 225 (801)
Q Consensus 218 ~~el~~l~ 225 (801)
..++..++
T Consensus 33 Keei~emk 40 (201)
T PF13851_consen 33 KEEIAEMK 40 (201)
T ss_pred HHHHHHHH
Confidence 33333333
No 222
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.66 E-value=0.017 Score=57.46 Aligned_cols=49 Identities=27% Similarity=0.539 Sum_probs=31.6
Q ss_pred EEEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceeec
Q 003711 486 SFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 486 ~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
.|+||.-+. ...+...|..+..+.+.--..+| .+|-||++|+||||.|.
T Consensus 4 ~~tFdnfv~-g~~N~~a~~~~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 4 KYTFDNFVV-GESNELAYAAAKAIAENPGERYN-PLFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp T-SCCCS---TTTTHHHHHHHHHHHHSTTTSSS-EEEEEESTTSSHHHHHH
T ss_pred CCccccCCc-CCcHHHHHHHHHHHHhcCCCCCC-ceEEECCCCCCHHHHHH
Confidence 488998664 35566677666655555222233 47889999999999874
No 223
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=94.59 E-value=6.9 Score=40.96 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcccCceeEEe
Q 003711 411 NHLEDAEYKLIEGEKLRKRLHNTILELKGNIRVFC 445 (801)
Q Consensus 411 ~~l~~l~~~l~~~e~~~~~l~~~l~~l~~~i~~~~ 445 (801)
..+.++...+.+...=...|...+..+...+..||
T Consensus 255 ~~y~el~~~l~eG~~FY~~L~~~~~~l~~~~~~f~ 289 (296)
T PF13949_consen 255 DAYKELSSNLEEGLKFYNDLLEILNKLQQKVEDFC 289 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333444444444444443333
No 224
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=94.33 E-value=0.084 Score=54.11 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 356 SSEDLEARCASQSNQIRSLSDQLAAAEE 383 (801)
Q Consensus 356 ~l~~le~~~~~l~~~~~~l~~~l~~l~~ 383 (801)
.+..++..+..+.-.+..|+..+..++.
T Consensus 127 dvsNLksdVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 127 DVSNLKSDVSTQALNITDLESRVKALES 154 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhcchHhhHHHHHHHHhc
Confidence 3444444455555555555555555544
No 225
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=94.25 E-value=10 Score=41.45 Aligned_cols=21 Identities=5% Similarity=0.117 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 003711 108 YKERCENMMDYIKRLRLCIKW 128 (801)
Q Consensus 108 ~~~~ie~l~~~i~~l~~~~~~ 128 (801)
+..++..|..++.+|...+..
T Consensus 92 ~~~kl~RL~~Ev~EL~eEl~~ 112 (388)
T PF04912_consen 92 PEQKLQRLRREVEELKEELEK 112 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555533
No 226
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.23 E-value=13 Score=42.63 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=11.3
Q ss_pred hhhhcccCceeEEeeeCCCCC
Q 003711 432 NTILELKGNIRVFCRVRPLLP 452 (801)
Q Consensus 432 ~~l~~l~~~i~~~~r~~~~~~ 452 (801)
.-+...+..|..+|+.-.+..
T Consensus 312 eli~k~r~Eleel~~~~h~s~ 332 (660)
T KOG4302|consen 312 ELIEKKRSELEELWRLLHYSE 332 (660)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 334455556666666655443
No 227
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=94.22 E-value=6.7 Score=42.01 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003711 111 RCENMMDYIKRLRLCIKWFQEL 132 (801)
Q Consensus 111 ~ie~l~~~i~~l~~~~~~l~~~ 132 (801)
++.+....+..++..+...+..
T Consensus 9 KL~et~~~V~~m~~~L~~~~~~ 30 (344)
T PF12777_consen 9 KLKETEEQVEEMQEELEEKQPE 30 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444333
No 228
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.20 E-value=13 Score=42.59 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 136 YAFEHERLRNALELSEQKCAEMELA 160 (801)
Q Consensus 136 ~~~e~~~l~~~l~~~~~~~~~l~~~ 160 (801)
......+|..++..++.++..+-..
T Consensus 59 a~~~~~~L~~~ia~~eael~~l~s~ 83 (660)
T KOG4302|consen 59 ASESKARLLQEIAVIEAELNDLCSA 83 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455554444444433
No 229
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.07 E-value=22 Score=44.60 Aligned_cols=9 Identities=11% Similarity=0.453 Sum_probs=3.8
Q ss_pred cccccccCC
Q 003711 739 YLLQPCLGG 747 (801)
Q Consensus 739 ~lL~~~l~g 747 (801)
-+|-..|||
T Consensus 982 l~lDEp~~~ 990 (1042)
T TIGR00618 982 LFIDEGFGS 990 (1042)
T ss_pred EEecCCCCC
Confidence 344444443
No 230
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=93.98 E-value=6.6 Score=38.32 Aligned_cols=76 Identities=12% Similarity=0.014 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 108 YKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLA 187 (801)
Q Consensus 108 ~~~~ie~l~~~i~~l~~~~~~l~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l~ 187 (801)
+-.++++-+........++.......-+....|..|..++..++.....+... ++-+..+.++++.-+..++.++.
T Consensus 83 Ws~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~----L~~I~sqQ~ELE~~L~~lE~k~~ 158 (254)
T KOG2196|consen 83 WSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQE----LEFILSQQQELEDLLDPLETKLE 158 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444443332222333334444444444444433333333 44444444444444444444443
No 231
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=93.97 E-value=8.3 Score=44.89 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=8.4
Q ss_pred ecCCceeEEEece
Q 003711 479 MQNGQKHSFSFDR 491 (801)
Q Consensus 479 ~~~~~~~~f~fd~ 491 (801)
-+.|-.++|+.++
T Consensus 400 GQTGSGKTyTM~G 412 (670)
T KOG0239|consen 400 GQTGSGKTYTMSG 412 (670)
T ss_pred cccCCCccccccC
Confidence 4456666777766
No 232
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=93.95 E-value=13 Score=41.67 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 003711 402 QKKLINELRNHLEDA 416 (801)
Q Consensus 402 ~~~~l~~l~~~l~~l 416 (801)
.+.-+..+-.+..++
T Consensus 385 ~r~~ye~lL~r~qe~ 399 (458)
T COG3206 385 ARSLYETLLQRYQEL 399 (458)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 233
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=93.93 E-value=12 Score=40.97 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 003711 134 GDYAFEHERLRNALELSEQKCAEME 158 (801)
Q Consensus 134 ~~~~~e~~~l~~~l~~~~~~~~~l~ 158 (801)
+.....+.+|+.+++++..++....
T Consensus 90 Es~~~kl~RL~~Ev~EL~eEl~~~~ 114 (388)
T PF04912_consen 90 ESPEQKLQRLRREVEELKEELEKRK 114 (388)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666666666655555443
No 234
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.92 E-value=2.4 Score=40.37 Aligned_cols=30 Identities=30% Similarity=0.537 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 270 IKRGEKEKSAIVENLSTLRGQYISLQEQLS 299 (801)
Q Consensus 270 ~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~ 299 (801)
++.+..+..++..++..++.+++..+..+.
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk 173 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLK 173 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333434444444444444444333333
No 235
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.87 E-value=0.32 Score=53.14 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=15.1
Q ss_pred ceEEEeeccCCcccceee
Q 003711 518 KVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 518 n~~v~~yG~tgsGKt~tl 535 (801)
...|+.||++|||||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 346899999999999865
No 236
>PRK06620 hypothetical protein; Validated
Probab=93.85 E-value=0.032 Score=55.25 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=35.1
Q ss_pred eeEEEeceecCCCCChhhHHHHHHHHHHHhhcCCc---eEEEeeccCCcccceeec
Q 003711 484 KHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYK---VCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 484 ~~~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n---~~v~~yG~tgsGKt~tl~ 536 (801)
...|+||.-+.. .++...|..+..+.+. + |+| -.++-||++||||||.+.
T Consensus 10 ~~~~tfd~Fvvg-~~N~~a~~~~~~~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIVS-SSNDQAYNIIKNWQCG-F-GVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEec-ccHHHHHHHHHHHHHc-c-ccCCCcceEEEECCCCCCHHHHHH
Confidence 346889987754 5556677776655542 1 333 468999999999999985
No 237
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=93.83 E-value=9.6 Score=41.02 Aligned_cols=43 Identities=23% Similarity=0.262 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003711 142 RLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQE 184 (801)
Q Consensus 142 ~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~ 184 (801)
.+...+++-+-+++.++.++..-.+--+.++..|++++...++
T Consensus 248 ~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 248 FILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEE 290 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3333344444444444444333333333344444444443333
No 238
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=93.72 E-value=6 Score=36.99 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 226 EELQSANQRIASINDMYKLLQEYNS 250 (801)
Q Consensus 226 ~~l~~~~~~l~~l~~~~~~l~~~~~ 250 (801)
..+..+..+..-++.+++.++..+.
T Consensus 64 ~qL~aAEtRCslLEKQLeyMRkmv~ 88 (178)
T PF14073_consen 64 SQLSAAETRCSLLEKQLEYMRKMVE 88 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444443333
No 239
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=18 Score=42.22 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 003711 400 EGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTI 434 (801)
Q Consensus 400 ~~~~~~l~~l~~~l~~l~~~l~~~e~~~~~l~~~l 434 (801)
..++.+...+..++.+.-.++..+...+..+.+.|
T Consensus 814 a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l 848 (984)
T COG4717 814 AELRQRRESLKEDLEEKARKWASLRLAVQVLEEAL 848 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444433
No 240
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=93.67 E-value=0.31 Score=52.91 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=14.9
Q ss_pred eEEEeeccCCcccceee
Q 003711 519 VCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 519 ~~v~~yG~tgsGKt~tl 535 (801)
..|+.||++|+|||++.
T Consensus 157 ~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLA 173 (364)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999876
No 241
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.67 E-value=0.036 Score=55.80 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=26.6
Q ss_pred HHHHHHhhcCCceEEEeeccCCcccceee
Q 003711 507 SQLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 507 ~~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
-+++..+++-.++.|+..||||||||+||
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 36788899999999999999999999998
No 242
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=93.62 E-value=0.15 Score=52.39 Aligned_cols=120 Identities=16% Similarity=0.254 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 233 QRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQK 312 (801)
Q Consensus 233 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~~ 312 (801)
.++..++.....+...+..+...+..+..++..+...+.+...++..+...+..++..+..+...+..+...+......+
T Consensus 35 eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssI 114 (326)
T PF04582_consen 35 ERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSI 114 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhH
Confidence 33333333333444444444444444444444444444555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003711 313 DALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (801)
Q Consensus 313 ~~l~~e~~~l~~el~~l~~~~~~l~~e~~~l~~el~~l~~ 352 (801)
..++..+..+.-++..++..+....-.+..|+.+++.++.
T Consensus 115 S~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 115 SDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALES 154 (326)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhc
Confidence 5555555555555555555555555555555555555443
No 243
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.61 E-value=0.8 Score=48.47 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhcCCceEEEeeccCCcccceeec
Q 003711 502 VFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 502 ~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
++..+..+++.+-.+. -.|+.||++|+||||.+.
T Consensus 168 ~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~ 201 (329)
T PRK06835 168 ILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSN 201 (329)
T ss_pred HHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHH
Confidence 4444556777776555 569999999999999874
No 244
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=93.61 E-value=8.5 Score=38.36 Aligned_cols=7 Identities=43% Similarity=0.392 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 003711 118 YIKRLRL 124 (801)
Q Consensus 118 ~i~~l~~ 124 (801)
.|..|+.
T Consensus 22 ~IN~lE~ 28 (239)
T PF05276_consen 22 EINRLEN 28 (239)
T ss_pred HHHHHHH
Confidence 3333333
No 245
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=93.44 E-value=5 Score=44.58 Aligned_cols=18 Identities=6% Similarity=0.106 Sum_probs=8.2
Q ss_pred HHHHHhhcCCceEEEeec
Q 003711 508 QLVQSALDGYKVCIFAYG 525 (801)
Q Consensus 508 ~~v~~~~~G~n~~v~~yG 525 (801)
+.....|...+.-|+.-|
T Consensus 580 ~~A~e~f~~~~iPv~~~~ 597 (652)
T COG2433 580 HAAAEEFFKNEIPVLPEG 597 (652)
T ss_pred hHHHHHHhhcCCceeecC
Confidence 344444444555444433
No 246
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=93.39 E-value=9.5 Score=38.26 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 397 TEFEGQKKLINELRNHLEDAEYKLIEG 423 (801)
Q Consensus 397 ~~~~~~~~~l~~l~~~l~~l~~~l~~~ 423 (801)
.++...++.+.+++.++..|+.++..+
T Consensus 193 kei~~~re~i~el~e~I~~L~~eV~~L 219 (258)
T PF15397_consen 193 KEIVQFREEIDELEEEIPQLRAEVEQL 219 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 247
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=93.30 E-value=5.8 Score=40.38 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=4.1
Q ss_pred cccCceeEEe
Q 003711 436 ELKGNIRVFC 445 (801)
Q Consensus 436 ~l~~~i~~~~ 445 (801)
++-..|.++-
T Consensus 163 ~yg~~i~~~~ 172 (251)
T PF11932_consen 163 EYGRTIEVYQ 172 (251)
T ss_pred HhCCceeEEE
Confidence 3344444443
No 248
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.22 E-value=0.054 Score=54.63 Aligned_cols=48 Identities=8% Similarity=0.308 Sum_probs=33.0
Q ss_pred eeEEEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceeec
Q 003711 484 KHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 484 ~~~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
...|.||.-+.. .+...+..+..++. ......++-||++|+||||.+.
T Consensus 16 ~~~~~fd~f~~~--~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 16 PDDETFASFYPG--DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCcCCccccccC--ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 345778876644 56666666655543 2223478999999999999984
No 249
>PRK06893 DNA replication initiation factor; Validated
Probab=93.10 E-value=0.063 Score=53.91 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=32.2
Q ss_pred eeEEEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceeec
Q 003711 484 KHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 484 ~~~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
...+.||..+... +...+ ..+...+-.+++-+++-||++|+||||.+.
T Consensus 10 ~~~~~fd~f~~~~-~~~~~----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 10 IDDETLDNFYADN-NLLLL----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CCcccccccccCC-hHHHH----HHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 3457899988654 22211 122333335677789999999999999984
No 250
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.08 E-value=1.9 Score=41.95 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 003711 108 YKERCENMMDYIKRLRLCI 126 (801)
Q Consensus 108 ~~~~ie~l~~~i~~l~~~~ 126 (801)
...++..++.++.+++.++
T Consensus 91 ~~~rlp~le~el~~l~~~l 109 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKL 109 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555666666555555
No 251
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=93.07 E-value=11 Score=38.11 Aligned_cols=22 Identities=5% Similarity=0.167 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003711 253 QHYNTKLQKDIDAAHESIKRGE 274 (801)
Q Consensus 253 ~~~~~~l~~el~~l~~~~~~l~ 274 (801)
+.++++...+++..++.+..++
T Consensus 196 e~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 196 EAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 252
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=93.05 E-value=14 Score=39.31 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003711 250 SSLQHYNTKLQKDIDAAH 267 (801)
Q Consensus 250 ~~l~~~~~~l~~el~~l~ 267 (801)
+.++.++-.|+.++.+++
T Consensus 326 ~~~q~q~~~Lrs~~~d~E 343 (554)
T KOG4677|consen 326 AHIQDQYTLLRSQIIDIE 343 (554)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 253
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=93.02 E-value=11 Score=38.32 Aligned_cols=6 Identities=33% Similarity=0.595 Sum_probs=2.2
Q ss_pred cccCce
Q 003711 436 ELKGNI 441 (801)
Q Consensus 436 ~l~~~i 441 (801)
-+++.+
T Consensus 170 ~~~~~i 175 (251)
T PF11932_consen 170 VYQGTI 175 (251)
T ss_pred EEEEEE
Confidence 333333
No 254
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.97 E-value=0.29 Score=53.32 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=15.4
Q ss_pred ceEEEeeccCCcccceee
Q 003711 518 KVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 518 n~~v~~yG~tgsGKt~tl 535 (801)
...|+.||++|||||+..
T Consensus 179 pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346889999999999976
No 255
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=92.94 E-value=0.3 Score=49.01 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=34.8
Q ss_pred eCChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEEEEEeeccCCCCceEEEEEEEEecCCCccc
Q 003711 625 VCSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFTLRISGLNESTEQQVQGILNLIDLAGSERL 690 (801)
Q Consensus 625 v~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~l~~vDLagse~~ 690 (801)
+.+..++...+..+... ..+. ...-|.-++.|+|+.-+. -.++||||+|-...
T Consensus 86 ~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~~-------~~ltLIDlPGl~~~ 138 (240)
T smart00053 86 FTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPHV-------LNLTLIDLPGITKV 138 (240)
T ss_pred cCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCCC-------CceEEEeCCCcccc
Confidence 35788888888876543 2111 123356688888876543 36999999999643
No 256
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=92.92 E-value=18 Score=40.02 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 360 LEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAE 417 (801)
Q Consensus 360 le~~~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 417 (801)
+..++......+..|++++...+..++. ++..+-+.+..+..++....++|+.|+
T Consensus 460 l~eeL~~a~~~i~~LqDEL~TTr~NYE~---QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 460 LEEELKEANQNISRLQDELETTRRNYEE---QLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444443333322 233333334444444444444444443
No 257
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=92.83 E-value=13 Score=38.45 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 356 SSEDLEARCASQSNQIRSLSDQLAA 380 (801)
Q Consensus 356 ~l~~le~~~~~l~~~~~~l~~~l~~ 380 (801)
++..+..+...+..++..|+.+++.
T Consensus 220 RLkKl~~eke~L~~qv~klk~qLee 244 (302)
T PF09738_consen 220 RLKKLADEKEELLEQVRKLKLQLEE 244 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555543
No 258
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.82 E-value=20 Score=40.36 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=10.5
Q ss_pred CCchHHHHHHHHHHHHhh
Q 003711 545 KGLIPRSLEQIFQTRQSL 562 (801)
Q Consensus 545 ~Gii~r~~~~lf~~~~~~ 562 (801)
.||=-++...|=..+..+
T Consensus 464 ~GIsG~~A~aVg~~L~~L 481 (557)
T COG0497 464 TGISGRVAQAVGKKLRRL 481 (557)
T ss_pred CCCChHHHHHHHHHHHHH
Confidence 366666666665555554
No 259
>PRK12377 putative replication protein; Provisional
Probab=92.82 E-value=0.074 Score=53.70 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=35.2
Q ss_pred EeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceeec
Q 003711 488 SFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 488 ~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
.||.-......+..++..+..++..+..+. ..++-||++|+||||.+.
T Consensus 72 tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~ 119 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAA 119 (248)
T ss_pred CcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHH
Confidence 556544444566667777777888777654 468889999999999984
No 260
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=92.77 E-value=13 Score=38.05 Aligned_cols=7 Identities=29% Similarity=0.392 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 003711 341 QALTAEV 347 (801)
Q Consensus 341 ~~l~~el 347 (801)
..++...
T Consensus 283 kdlEA~h 289 (561)
T KOG1103|consen 283 KDLEADH 289 (561)
T ss_pred hhhhhhh
Confidence 3333333
No 261
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.73 E-value=0.065 Score=58.34 Aligned_cols=32 Identities=31% Similarity=0.305 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCceEEEeeccCCcccceeecc
Q 003711 506 ISQLVQSALDGYKVCIFAYGQTGSGKTYTMMG 537 (801)
Q Consensus 506 ~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~G 537 (801)
-...+..++..-++.|+.-||||||||+||+.
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 34567888899999999999999999999974
No 262
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=92.13 E-value=11 Score=37.66 Aligned_cols=9 Identities=33% Similarity=0.512 Sum_probs=4.6
Q ss_pred CChhhHHHH
Q 003711 497 ESQEDVFVE 505 (801)
Q Consensus 497 ~~~~~~~~~ 505 (801)
++-.++|.+
T Consensus 228 ~~~~Dll~e 236 (305)
T PF15290_consen 228 ASRTDLLEE 236 (305)
T ss_pred ccchhHHHH
Confidence 445555544
No 263
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=92.03 E-value=28 Score=40.26 Aligned_cols=14 Identities=21% Similarity=0.218 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 003711 137 AFEHERLRNALELS 150 (801)
Q Consensus 137 ~~e~~~l~~~l~~~ 150 (801)
+.++++|+.++..+
T Consensus 435 e~elekLk~eilKA 448 (762)
T PLN03229 435 EGEVEKLKEQILKA 448 (762)
T ss_pred HHHHHHHHHHHHhc
Confidence 44455555555444
No 264
>PRK07952 DNA replication protein DnaC; Validated
Probab=91.94 E-value=0.1 Score=52.50 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=33.9
Q ss_pred EEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceeec
Q 003711 487 FSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 487 f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
+.||.-......+..++..+..+++....|. ..++.||++|+||||.+.
T Consensus 69 ~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~ 117 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKARQYVEEFDGNI-ASFIFSGKPGTGKNHLAA 117 (244)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhhccCC-ceEEEECCCCCCHHHHHH
Confidence 3555543334556667777777777665543 378899999999999984
No 265
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=91.89 E-value=12 Score=39.47 Aligned_cols=22 Identities=23% Similarity=0.093 Sum_probs=11.2
Q ss_pred HHhhcCCceEEEeeccCCcccc
Q 003711 511 QSALDGYKVCIFAYGQTGSGKT 532 (801)
Q Consensus 511 ~~~~~G~n~~v~~yG~tgsGKt 532 (801)
.+.+.|.++.|...--.-.||.
T Consensus 212 ~~tLaGs~g~it~~d~d~~~~~ 233 (459)
T KOG0288|consen 212 ISTLAGSLGNITSIDFDSDNKH 233 (459)
T ss_pred hhhhhccCCCcceeeecCCCce
Confidence 4555666655544444444443
No 266
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.87 E-value=0.08 Score=59.90 Aligned_cols=51 Identities=22% Similarity=0.451 Sum_probs=34.9
Q ss_pred eeEEEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceeec
Q 003711 484 KHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 484 ~~~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
...|.||.-+.. .++...|..+..++...-.++|. ||-||++|+||||.+.
T Consensus 282 ~~~~TFDnFvvG-~sN~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 282 NPKYTFDTFVIG-ASNRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred CCCCCHhhhcCC-CccHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence 355888886543 34555665555555543345665 8999999999999984
No 267
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.69 E-value=28 Score=39.61 Aligned_cols=8 Identities=25% Similarity=0.152 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 003711 143 LRNALELS 150 (801)
Q Consensus 143 l~~~l~~~ 150 (801)
.+.+++++
T Consensus 353 YQ~Dl~El 360 (1480)
T COG3096 353 YQADLEEL 360 (1480)
T ss_pred HHhhHHHH
Confidence 33333333
No 268
>PLN03188 kinesin-12 family protein; Provisional
Probab=91.56 E-value=42 Score=41.30 Aligned_cols=9 Identities=44% Similarity=0.944 Sum_probs=5.3
Q ss_pred HhhcCCceE
Q 003711 512 SALDGYKVC 520 (801)
Q Consensus 512 ~~~~G~n~~ 520 (801)
+-|.||+-|
T Consensus 1310 ~wf~gyd~c 1318 (1320)
T PLN03188 1310 SWFSGYDRC 1318 (1320)
T ss_pred hhhccCccc
Confidence 345677655
No 269
>PRK05642 DNA replication initiation factor; Validated
Probab=91.44 E-value=0.12 Score=52.02 Aligned_cols=50 Identities=12% Similarity=0.276 Sum_probs=29.4
Q ss_pred eEEEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceeec
Q 003711 485 HSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 485 ~~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
..|+||.-+... +...+..+..+....-......++-||++|+||||.+.
T Consensus 14 ~~~tfdnF~~~~--~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 14 DDATFANYYPGA--NAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CcccccccCcCC--hHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 457888876442 33333333333221111123568899999999999974
No 270
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=91.36 E-value=19 Score=36.90 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=19.3
Q ss_pred CCcchhccHHHHHHHHhHHHhhcchhhhHHHHHHHHHHHHHHH
Q 003711 81 ECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLR 123 (801)
Q Consensus 81 ~~~~~~~~~~e~~~l~~e~~~~~~~~~~~~~ie~l~~~i~~l~ 123 (801)
.+|+-.|+++++-.|..= +..+++.-..-|+.|+
T Consensus 6 eqgvnd~Sk~ELl~LfS~---------lEGEleARd~VIdaLK 39 (561)
T KOG1103|consen 6 EQGVNDFSKDELLKLFSF---------LEGELEARDDVIDALK 39 (561)
T ss_pred hccccccchHHHHHHHHH---------HhhhhhHHHHHHHHHH
Confidence 345556777887766443 4455555555555554
No 271
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=91.35 E-value=0.14 Score=51.52 Aligned_cols=48 Identities=15% Similarity=0.343 Sum_probs=32.5
Q ss_pred eeEEEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceee
Q 003711 484 KHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 484 ~~~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
...|.||..+.. ....++..+..++.. .+....|+-||++||||||.+
T Consensus 12 ~~~~~~d~f~~~--~~~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 12 PPPPTFDNFVAG--ENAELVARLRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CChhhhcccccC--CcHHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 456889998732 233455555555442 244567899999999999987
No 272
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=91.29 E-value=8.5 Score=45.94 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=12.6
Q ss_pred CceEEEeeccCCcccceeec
Q 003711 517 YKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 517 ~n~~v~~yG~tgsGKt~tl~ 536 (801)
..+.+|+-...|.|||++-.
T Consensus 531 ~kvI~vtS~~~g~GKTtva~ 550 (726)
T PRK09841 531 NNILMITGATPDSGKTFVSS 550 (726)
T ss_pred CeEEEEecCCCCCCHHHHHH
Confidence 34444555555999998763
No 273
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=91.08 E-value=0.15 Score=51.08 Aligned_cols=47 Identities=19% Similarity=0.450 Sum_probs=33.3
Q ss_pred eeEEEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceee
Q 003711 484 KHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 484 ~~~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
...|+||.... ..+..++..+..++. .+....|+.||++|+||||.+
T Consensus 9 ~~~~~~~~~~~--~~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 9 PDDPTFDNFYA--GGNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCchhhcCcCc--CCcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHH
Confidence 34578887763 245556666555433 456778999999999999987
No 274
>PRK08116 hypothetical protein; Validated
Probab=91.07 E-value=0.13 Score=52.92 Aligned_cols=50 Identities=22% Similarity=0.406 Sum_probs=36.0
Q ss_pred EEEeceecCCCCChhhHHHHHHHHHHHhhc--CCceEEEeeccCCcccceeec
Q 003711 486 SFSFDRVFMPDESQEDVFVEISQLVQSALD--GYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 486 ~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~--G~n~~v~~yG~tgsGKt~tl~ 536 (801)
.++||.-. .+..+...|..+..+++.+.. ..+..++.||++|+||||.+.
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred hcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 45666543 345566677777778877654 345679999999999999984
No 275
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=90.90 E-value=29 Score=38.34 Aligned_cols=62 Identities=11% Similarity=0.218 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003711 287 LRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHK 351 (801)
Q Consensus 287 l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~~e~~~l~~el~~l~ 351 (801)
...+...+...+...+.....+..++..+...+..+++++.. .....+.++..+.+.+..+.
T Consensus 439 f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~T---Tr~NYE~QLs~MSEHLasmN 500 (518)
T PF10212_consen 439 FYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELET---TRRNYEEQLSMMSEHLASMN 500 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333344444444444433322 12233444444444444433
No 276
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.88 E-value=2.1 Score=42.10 Aligned_cols=87 Identities=21% Similarity=0.361 Sum_probs=52.6
Q ss_pred ceeeecCCceeEEEeceecCCCCChhhHHHHHH-HHHHHhh---cCCce--EEEeeccCCcccceeeccCCCC-------
Q 003711 475 GIDIMQNGQKHSFSFDRVFMPDESQEDVFVEIS-QLVQSAL---DGYKV--CIFAYGQTGSGKTYTMMGKPGH------- 541 (801)
Q Consensus 475 ~i~~~~~~~~~~f~fd~v~~~~~~~~~~~~~~~-~~v~~~~---~G~n~--~v~~yG~tgsGKt~tl~G~~~~------- 541 (801)
.|..+..++.-...+..|=+-+....+|-+.|. |+.+.-+ -|.+- .|+.|||.|+|||-..-.-..+
T Consensus 140 si~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~fir 219 (408)
T KOG0727|consen 140 SISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIR 219 (408)
T ss_pred cccccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheee
Confidence 344444455555556666666666666766654 6655444 24433 6899999999998543111000
Q ss_pred -------CCCCCchHHHHHHHHHHHHh
Q 003711 542 -------PDLKGLIPRSLEQIFQTRQS 561 (801)
Q Consensus 542 -------~~~~Gii~r~~~~lf~~~~~ 561 (801)
...-|-=||.++|+|....+
T Consensus 220 vvgsefvqkylgegprmvrdvfrlake 246 (408)
T KOG0727|consen 220 VVGSEFVQKYLGEGPRMVRDVFRLAKE 246 (408)
T ss_pred eccHHHHHHHhccCcHHHHHHHHHHhc
Confidence 01136669999999987655
No 277
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.85 E-value=21 Score=43.33 Aligned_cols=44 Identities=25% Similarity=0.322 Sum_probs=28.5
Q ss_pred EeceecCCCCChhhHHHHHHHHHHHhhcCCc------eEEEeeccCCcccceee
Q 003711 488 SFDRVFMPDESQEDVFVEISQLVQSALDGYK------VCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 488 ~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n------~~v~~yG~tgsGKt~tl 535 (801)
-+..|++ |......|...|..+..|.. ++++-+||+|+|||++.
T Consensus 566 l~~~viG----Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 566 LHHRVIG----QNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred hCCeEeC----CHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 3455664 44445555555555544432 57888899999999976
No 278
>PRK09087 hypothetical protein; Validated
Probab=90.64 E-value=0.14 Score=51.14 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=31.7
Q ss_pred eeEEEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceeec
Q 003711 484 KHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 484 ~~~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
...|.||.-+.. .++..+|..+..+ ..-.+-.++-||++||||||.+.
T Consensus 15 ~~~~~~~~Fi~~-~~N~~a~~~l~~~----~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 15 DPAYGRDDLLVT-ESNRAAVSLVDHW----PNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCChhceeec-CchHHHHHHHHhc----ccCCCCeEEEECCCCCCHHHHHH
Confidence 345788887753 3445566644332 22235568999999999999984
No 279
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=90.60 E-value=33 Score=38.44 Aligned_cols=7 Identities=43% Similarity=0.662 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 003711 373 SLSDQLA 379 (801)
Q Consensus 373 ~l~~~l~ 379 (801)
.|..++.
T Consensus 353 ~L~~~~~ 359 (458)
T COG3206 353 ALEKELA 359 (458)
T ss_pred HHHHHHH
Confidence 3333333
No 280
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=90.58 E-value=21 Score=36.13 Aligned_cols=20 Identities=30% Similarity=0.238 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003711 398 EFEGQKKLINELRNHLEDAE 417 (801)
Q Consensus 398 ~~~~~~~~l~~l~~~l~~l~ 417 (801)
+..-++.+++.++.++.-.+
T Consensus 116 ERR~lQgEmQ~LrDKLAiaE 135 (351)
T PF07058_consen 116 ERRFLQGEMQQLRDKLAIAE 135 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555554433
No 281
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=90.53 E-value=10 Score=45.18 Aligned_cols=21 Identities=10% Similarity=-0.040 Sum_probs=12.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHh
Q 003711 757 ISPEASSVGESLCSLRFAARV 777 (801)
Q Consensus 757 isp~~~~~~etl~tL~fa~~~ 777 (801)
+.+......+...+++...+.
T Consensus 671 vr~~~t~~~~~~~~~~~l~~~ 691 (726)
T PRK09841 671 ARFGLNTAKEVSLSMQRLEQA 691 (726)
T ss_pred EeCCCCCHHHHHHHHHHHHhC
Confidence 455555666666666655543
No 282
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=90.52 E-value=0.15 Score=56.55 Aligned_cols=50 Identities=20% Similarity=0.447 Sum_probs=35.0
Q ss_pred ceeEEEeceecCCCCChhhHHHHHHHHHHHhhcC-CceEEEeeccCCcccceeec
Q 003711 483 QKHSFSFDRVFMPDESQEDVFVEISQLVQSALDG-YKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 483 ~~~~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G-~n~~v~~yG~tgsGKt~tl~ 536 (801)
-...|+||.-+.. .++...|..+..++.. .| +| .+|-||++|+||||.+.
T Consensus 98 l~~~~tFdnFv~g-~~n~~a~~~~~~~~~~--~~~~n-~l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 98 LNPDYTFENFVVG-PGNSFAYHAALEVAKN--PGRYN-PLFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCCCcccccccC-CchHHHHHHHHHHHhC--cCCCC-eEEEEcCCCCcHHHHHH
Confidence 3456899986653 4566666665555543 23 55 49999999999999984
No 283
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=90.42 E-value=23 Score=37.86 Aligned_cols=18 Identities=22% Similarity=0.123 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003711 247 EYNSSLQHYNTKLQKDID 264 (801)
Q Consensus 247 ~~~~~l~~~~~~l~~el~ 264 (801)
..+..++.++.-...+++
T Consensus 246 del~Sle~q~~~s~~qld 263 (447)
T KOG2751|consen 246 DELDSLEAQIEYSQAQLD 263 (447)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 284
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=90.33 E-value=14 Score=39.46 Aligned_cols=7 Identities=29% Similarity=0.525 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 003711 549 PRSLEQI 555 (801)
Q Consensus 549 ~r~~~~l 555 (801)
.|++.-+
T Consensus 423 TrALkFm 429 (447)
T KOG2751|consen 423 TRALKFM 429 (447)
T ss_pred HHHHHHH
Confidence 3333333
No 285
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=90.31 E-value=25 Score=36.53 Aligned_cols=20 Identities=5% Similarity=0.182 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 003711 394 ETKTEFEGQKKLINELRNHL 413 (801)
Q Consensus 394 ~~~~~~~~~~~~l~~l~~~l 413 (801)
+...++.+++-++...+.++
T Consensus 280 danrqisd~KfKl~KaEQei 299 (302)
T PF09738_consen 280 DANRQISDYKFKLQKAEQEI 299 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33455566666665555444
No 286
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.31 E-value=36 Score=38.39 Aligned_cols=39 Identities=15% Similarity=0.091 Sum_probs=18.5
Q ss_pred EEEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeecc
Q 003711 486 SFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQ 526 (801)
Q Consensus 486 ~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~ 526 (801)
+.-||.| |...+ ..+-..|...+..+-...-+.++++=|
T Consensus 456 tlIFDEV-D~GIs-G~~A~aVg~~L~~Ls~~~QVl~VTHlP 494 (557)
T COG0497 456 TLIFDEV-DTGIS-GRVAQAVGKKLRRLSEHHQVLCVTHLP 494 (557)
T ss_pred eEEEecc-cCCCC-hHHHHHHHHHHHHHhcCceEEEEecHH
Confidence 4555555 22222 233334555555555565555554433
No 287
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.11 E-value=29 Score=37.03 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003711 171 IIVELRKSFASLQEKLAK 188 (801)
Q Consensus 171 ~l~~l~~~l~~l~~~l~~ 188 (801)
.++.++..+..+...+.+
T Consensus 174 e~kqlEe~ieeL~qsl~k 191 (446)
T KOG4438|consen 174 EVKQLEENIEELNQSLLK 191 (446)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 288
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=90.09 E-value=20 Score=35.11 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003711 165 EEELNLIIVELRKSFASLQEKLA 187 (801)
Q Consensus 165 i~~l~~~l~~l~~~l~~l~~~l~ 187 (801)
+..|+.-+....-+++..++-..
T Consensus 73 ~~~LeeliNkWs~el~~Qe~vF~ 95 (254)
T KOG2196|consen 73 YKTLEELINKWSLELEEQERVFL 95 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666555555444333
No 289
>PRK11519 tyrosine kinase; Provisional
Probab=89.96 E-value=16 Score=43.57 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=13.7
Q ss_pred CCceEEEeeccCCcccceee
Q 003711 516 GYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 516 G~n~~v~~yG~tgsGKt~tl 535 (801)
+.++.+|+-...|.|||++.
T Consensus 525 ~~kvi~vts~~~geGKTt~a 544 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVC 544 (719)
T ss_pred CceEEEEECCCCCCCHHHHH
Confidence 33455566557799999875
No 290
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=89.93 E-value=0.35 Score=47.95 Aligned_cols=113 Identities=21% Similarity=0.331 Sum_probs=60.5
Q ss_pred HHHHhhcCCce-EEEeeccCCcccceeeccCCCCCCCCCchHHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceeccc
Q 003711 509 LVQSALDGYKV-CIFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLL 587 (801)
Q Consensus 509 ~v~~~~~G~n~-~v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL 587 (801)
-...++.|..+ -|+.||..|||||.++- +++.. +...+ +..+||..+.+.||-
T Consensus 42 Nt~~Fl~G~pannvLL~G~rGtGKSSlVk---------all~~-----------y~~~G------LRlIev~k~~L~~l~ 95 (249)
T PF05673_consen 42 NTEQFLQGLPANNVLLWGARGTGKSSLVK---------ALLNE-----------YADQG------LRLIEVSKEDLGDLP 95 (249)
T ss_pred HHHHHHcCCCCcceEEecCCCCCHHHHHH---------HHHHH-----------HhhcC------ceEEEECHHHhccHH
Confidence 34677788755 46779999999998873 22211 11222 677899877776663
Q ss_pred CCCccchhhhhccCCCceEEEeCCCCCeEEcccEEEEe-CChHHHHHHHHHHhhcCccccCCCCCCCCCceeEEE
Q 003711 588 STNRDASRLENACNGKQYAIKHDASGNTHVTDLTVVDV-CSTKEVSYLLDRAAHSRSVGKTQMNEQSSRSHFVFT 661 (801)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~s~~e~~~~l~~~~~~r~~~~~~~n~~ssrsh~i~~ 661 (801)
.--. .+. ..+.++.+..| +|+.-.- .+...+-.+|+.+...| ....-..++|.|-|+|-.
T Consensus 96 ~l~~---~l~--~~~~kFIlf~D--------DLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 96 ELLD---LLR--DRPYKFILFCD--------DLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRHLVPE 156 (249)
T ss_pred HHHH---HHh--cCCCCEEEEec--------CCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhhccch
Confidence 1100 000 01234444444 3332111 23344555555554333 444555677788787753
No 291
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=89.87 E-value=31 Score=36.89 Aligned_cols=47 Identities=21% Similarity=0.269 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCceeEEeee
Q 003711 401 GQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELKGNIRVFCRV 447 (801)
Q Consensus 401 ~~~~~l~~l~~~l~~l~~~l~~~e~~~~~l~~~l~~l~~~i~~~~r~ 447 (801)
..-..+...-..+.++...+.+...=...|...+..+..++..||.+
T Consensus 290 ~~l~~L~~ay~~y~el~~~l~eG~~FY~dL~~~v~~~~~~~~~f~~~ 336 (337)
T cd09234 290 STISSLIASYEAYEDLLKKSQKGIDFYKKLEGNVSKLLQRIKSVCKV 336 (337)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444444555555555555555555666666666666655543
No 292
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=89.79 E-value=35 Score=37.53 Aligned_cols=8 Identities=25% Similarity=0.351 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 003711 114 NMMDYIKR 121 (801)
Q Consensus 114 ~l~~~i~~ 121 (801)
.|.+.+..
T Consensus 171 rm~aqi~~ 178 (531)
T PF15450_consen 171 RMQAQITK 178 (531)
T ss_pred HHHHHHHH
Confidence 33333333
No 293
>COG5283 Phage-related tail protein [Function unknown]
Probab=89.77 E-value=57 Score=39.86 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003711 143 LRNALELSEQKCAEMELA 160 (801)
Q Consensus 143 l~~~l~~~~~~~~~l~~~ 160 (801)
|...+....+....++.+
T Consensus 27 L~ssi~~~~~~~k~~e~q 44 (1213)
T COG5283 27 LKSSIKDSTQFWKMLEKQ 44 (1213)
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 444444444444444444
No 294
>PRK08939 primosomal protein DnaI; Reviewed
Probab=89.72 E-value=0.19 Score=52.70 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=33.7
Q ss_pred EEeceecCCCCChhhHHHHHHHHHHHhhcC-CceEEEeeccCCcccceeec
Q 003711 487 FSFDRVFMPDESQEDVFVEISQLVQSALDG-YKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 487 f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G-~n~~v~~yG~tgsGKt~tl~ 536 (801)
..|+.+-..+.....++..+..+++....| ..-.++.||++|+||||.+.
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHH
Confidence 566665433335555666555677766554 33479999999999999984
No 295
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=89.72 E-value=0.56 Score=52.87 Aligned_cols=65 Identities=8% Similarity=-0.101 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccCCCCcccchhhhhcccccccccccccccccccccccCcccCCCCCCC
Q 003711 3 SNNQNKPPVLSNNITKASPSSNKKKLGVDEVTCDKEQKFGAEKMVGTANNARIRQAFSVVNGIQDLGLSSNP 74 (801)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (801)
+..+||||+||+.+.+++|++..+-++.+|+.| -..++.|+.+++++|+.....+|+...+..++
T Consensus 539 ~g~pppPppPPlpggag~PPPPpplPg~aG~PP-------pPppppg~~gppPPPpp~g~~Gg~ppPP~~gm 603 (1102)
T KOG1924|consen 539 TGPPPPPPPPPLPGGAGPPPPPPPLPGIAGGPP-------PPPPPPGGGGPPPPPPPGGFLGGPPPPPPPGM 603 (1102)
T ss_pred CCCCCCCCCCCCCCCCCCCccCCCCCcccCCCC-------ccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCc
No 296
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=89.64 E-value=3.5 Score=40.55 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=14.9
Q ss_pred CceEEEeeccCCcccceee
Q 003711 517 YKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 517 ~n~~v~~yG~tgsGKt~tl 535 (801)
.--.|+.|||.|+|||...
T Consensus 180 QPKGvlLygppgtGktLla 198 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLA 198 (404)
T ss_pred CCcceEEecCCCCchhHHH
Confidence 3446899999999998643
No 297
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.13 E-value=0.24 Score=48.89 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=28.2
Q ss_pred HHHHH--HHHHHHhhcCCceEEEeeccCCcccceee
Q 003711 502 VFVEI--SQLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 502 ~~~~~--~~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
-|+++ .+.++.+.--..+.|+..|+|||||++||
T Consensus 109 t~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 109 TFEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred cHHhcCCcHHHHHhhcccCceEEEECCCCCCchhhH
Confidence 35553 35788888888999999999999999987
No 298
>PRK08181 transposase; Validated
Probab=88.83 E-value=0.21 Score=51.07 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=17.1
Q ss_pred cCCceEEEeeccCCcccceeecc
Q 003711 515 DGYKVCIFAYGQTGSGKTYTMMG 537 (801)
Q Consensus 515 ~G~n~~v~~yG~tgsGKt~tl~G 537 (801)
.|.| |+-||++|+||||.+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4444 88999999999998854
No 299
>PRK11519 tyrosine kinase; Provisional
Probab=88.62 E-value=22 Score=42.39 Aligned_cols=22 Identities=14% Similarity=-0.001 Sum_probs=11.4
Q ss_pred EecCCCCCCHHHHHHHHHHHHH
Q 003711 755 VNISPEASSVGESLCSLRFAAR 776 (801)
Q Consensus 755 ~~isp~~~~~~etl~tL~fa~~ 776 (801)
..+.+......+...+++.-..
T Consensus 664 ~Vvr~~~t~~~~~~~~~~~l~~ 685 (719)
T PRK11519 664 MVARYAVNTLKEVETSLSRFEQ 685 (719)
T ss_pred EEEeCCCCCHHHHHHHHHHHHh
Confidence 3345555556555555554443
No 300
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=88.54 E-value=0.26 Score=54.70 Aligned_cols=49 Identities=24% Similarity=0.504 Sum_probs=31.9
Q ss_pred EEEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceeec
Q 003711 486 SFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 486 ~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
.|+||.-+.. .++...|..+..++..-=..+| .+|-||++|+||||.|.
T Consensus 111 ~~tFdnFv~g-~~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIG-SSNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCC-CcHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 4899986654 3455566555555432111123 58899999999999984
No 301
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=88.53 E-value=0.26 Score=55.07 Aligned_cols=53 Identities=21% Similarity=0.360 Sum_probs=34.5
Q ss_pred CceeEEEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceeec
Q 003711 482 GQKHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 482 ~~~~~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
+-...|.||.-... ..+...|..+..+.+.--..+| .+|-||++|+||||.+.
T Consensus 114 ~l~~~~tfd~fv~g-~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 114 PLNPKYTFDNFVVG-KSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCCCCcccccccC-CCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 33466888884433 4555566666555554222233 58889999999999983
No 302
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=88.09 E-value=0.87 Score=48.99 Aligned_cols=30 Identities=40% Similarity=0.692 Sum_probs=22.3
Q ss_pred HHHHHHHhhcCCceE-EEeeccCCcccceee
Q 003711 506 ISQLVQSALDGYKVC-IFAYGQTGSGKTYTM 535 (801)
Q Consensus 506 ~~~~v~~~~~G~n~~-v~~yG~tgsGKt~tl 535 (801)
+..++..++.|.-.. ++.||+||+|||.++
T Consensus 29 l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 29 LASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 444566666655443 999999999999886
No 303
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=88.05 E-value=21 Score=34.32 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003711 360 LEARCASQSNQIRSLSDQLA 379 (801)
Q Consensus 360 le~~~~~l~~~~~~l~~~l~ 379 (801)
+...+..+..........+.
T Consensus 140 ~~~~~~~~~~~anrwTDNI~ 159 (188)
T PF03962_consen 140 LKEEIKIAKEAANRWTDNIF 159 (188)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 33333333333333333333
No 304
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=87.89 E-value=0.33 Score=53.54 Aligned_cols=51 Identities=22% Similarity=0.406 Sum_probs=33.2
Q ss_pred eeEEEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceeec
Q 003711 484 KHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 484 ~~~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
...|.||.-+. ...+...|..+..+...--..+| .++-||++|+||||.+.
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 45688888443 34555566665555554211123 57889999999999983
No 305
>PF13245 AAA_19: Part of AAA domain
Probab=87.73 E-value=0.25 Score=39.65 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=17.9
Q ss_pred HHHhhcCCceEEEeeccCCcccceeec
Q 003711 510 VQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 510 v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
|..++. -+..++..|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 444555 33345558999999999874
No 306
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=87.71 E-value=47 Score=36.34 Aligned_cols=8 Identities=13% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 003711 112 CENMMDYI 119 (801)
Q Consensus 112 ie~l~~~i 119 (801)
++.+...+
T Consensus 94 i~~lk~~l 101 (424)
T PF03915_consen 94 IEELKQEL 101 (424)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33333333
No 307
>PRK08727 hypothetical protein; Validated
Probab=87.61 E-value=0.33 Score=48.87 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.9
Q ss_pred eEEEeeccCCcccceeec
Q 003711 519 VCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 519 ~~v~~yG~tgsGKt~tl~ 536 (801)
-.|+-||++||||||.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999999884
No 308
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=87.43 E-value=20 Score=31.85 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003711 209 NMERSHASLSEDLGKAQEE 227 (801)
Q Consensus 209 ~l~~~~~~l~~el~~l~~~ 227 (801)
....++..+..++..+...
T Consensus 78 ~k~~ei~~l~~~l~~l~~~ 96 (126)
T PF13863_consen 78 EKEAEIKKLKAELEELKSE 96 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444333333333
No 309
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=87.19 E-value=35 Score=34.29 Aligned_cols=135 Identities=9% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 122 LRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLA 201 (801)
Q Consensus 122 l~~~~~~l~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~ 201 (801)
++..-++.+--.+....-...+...+......+..+..++...++.+...-+.+..++..+-++...+...+.++...+.
T Consensus 218 ~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~ 297 (384)
T KOG0972|consen 218 LKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYK 297 (384)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 202 REKETRLNMERSHASLSEDLGKAQEELQS-------------ANQRIASINDMYKLLQEYNSSLQHYN 256 (801)
Q Consensus 202 ~~~~~~~~l~~~~~~l~~el~~l~~~l~~-------------~~~~l~~l~~~~~~l~~~~~~l~~~~ 256 (801)
+...........+.+...+++.++.++++ +++.+..++++...+.-++.-+...+
T Consensus 298 q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~mnv~igv~ehs~ 365 (384)
T KOG0972|consen 298 QASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTMNVQIGVFEHSI 365 (384)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhheehhhHHH
No 310
>PRK12704 phosphodiesterase; Provisional
Probab=87.14 E-value=60 Score=36.90 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=9.8
Q ss_pred ceecCCCCChhhHHHHHHHHH
Q 003711 490 DRVFMPDESQEDVFVEISQLV 510 (801)
Q Consensus 490 d~v~~~~~~~~~~~~~~~~~v 510 (801)
|+...| ..-++++..+..-+
T Consensus 276 dg~i~P-~~iee~~~~~~~~~ 295 (520)
T PRK12704 276 DGRIHP-ARIEEMVEKARKEV 295 (520)
T ss_pred cCCcCC-CCHHHHHHHHHHHH
Confidence 444444 34566665554433
No 311
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=86.77 E-value=35 Score=33.86 Aligned_cols=242 Identities=10% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 003711 184 EKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYN----TKL 259 (801)
Q Consensus 184 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~----~~l 259 (801)
.++..+..+...+.+......+.+..+.+++.+.+.+.+.+....+.++..++.++.+++-+-.---....+. ..+
T Consensus 9 a~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdL 88 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDL 88 (389)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003711 260 QKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQ 339 (801)
Q Consensus 260 ~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~~e 339 (801)
-..+.....+-..+..+.+.+..+..++....+.+.+-....+.+...--.+-..-..+--.++.+-...-...+.+...
T Consensus 89 aa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwrrdeanfic~~EgLkak 168 (389)
T KOG4687|consen 89 AADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWRRDEANFICAHEGLKAK 168 (389)
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 340 VQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVS--DLSALETKTEFEGQKKLINELRNHLEDAE 417 (801)
Q Consensus 340 ~~~l~~el~~l~~l~~~l~~le~~~~~l~~~~~~l~~~l~~l~~~l~~~--~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 417 (801)
-..|...+..+-. ..++|--+.+..+-....|..++--+-..-... -..+..+-.+-.-+..++.-...+++-.+
T Consensus 169 ~a~LafDLkamid---eKEELimERDa~kcKa~RLnhELfvaLnadkrhpr~~DiDgll~ENkfLhaklkiadeElEliK 245 (389)
T KOG4687|consen 169 CAGLAFDLKAMID---EKEELIMERDAMKCKAARLNHELFVALNADKRHPRAEDIDGLLAENKFLHAKLKIADEELELIK 245 (389)
T ss_pred hhhhhhHHHHHhc---hHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCCCchhhhhHHHHHhhHHHHHHhcccHHHHHHHH
Q ss_pred HHHHHHHHHHh
Q 003711 418 YKLIEGEKLRK 428 (801)
Q Consensus 418 ~~l~~~e~~~~ 428 (801)
..+....++..
T Consensus 246 ~siaKYKqM~d 256 (389)
T KOG4687|consen 246 MSIAKYKQMAD 256 (389)
T ss_pred HHHHHHHHHHH
No 312
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=86.74 E-value=0.35 Score=46.31 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=19.4
Q ss_pred HHHHHHHhhcCCceEEEeeccCCcccceeec
Q 003711 506 ISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 506 ~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
+..+...-+-...-.++.+|++|+||||...
T Consensus 35 ~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~ 65 (178)
T PF01695_consen 35 IAQLAALEFIENGENLILYGPPGTGKTHLAV 65 (178)
T ss_dssp HHHHHHH-S-SC--EEEEEESTTSSHHHHHH
T ss_pred HHHHhcCCCcccCeEEEEEhhHhHHHHHHHH
Confidence 3334444443344568999999999999874
No 313
>PRK10436 hypothetical protein; Provisional
Probab=86.61 E-value=0.38 Score=53.35 Aligned_cols=31 Identities=35% Similarity=0.368 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCCceEEEeeccCCcccceeec
Q 003711 506 ISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 506 ~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
....+..++..-++.|+..|+||||||+||+
T Consensus 206 ~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 206 QLAQFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3345667777889999999999999999995
No 314
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=86.47 E-value=50 Score=35.36 Aligned_cols=240 Identities=14% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 207 RLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSS-------LQHYNTKLQKDIDAAHESIKRGEKEKSA 279 (801)
Q Consensus 207 ~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~-------l~~~~~~l~~el~~l~~~~~~l~~e~~~ 279 (801)
+..+...+..+..-.......+......+..-..+-..++..... ...-...+..++..+...+.....-=..
T Consensus 72 ~~~l~~~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~~w~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~ 151 (342)
T cd08915 72 LDNIEQSFKELSKLRQNVEELLQECEELLEEEAAEDDQLRAKFGTLRWRRPSSDEAAKELYEKVTKLRGYLEQASNSDNE 151 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q ss_pred HHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 003711 280 IVENLSTLRGQYISLQE------------------QLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQ 341 (801)
Q Consensus 280 l~~~l~~l~~~~~~l~~------------------~l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~~e~~ 341 (801)
+...+......+.-+.. .....-..+..+-.++..+..+...+..++......-+-...=+.
T Consensus 152 l~~~~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~~~ddI~~~ll~ 231 (342)
T cd08915 152 VLQCYESIDPNLVLLCGGYKELKAFIPSPYPALDPEVSEVVSSLRPLLNEVSELEKERERFISELEIKSRNNDILPKLIT 231 (342)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHhCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHH
Q ss_pred HHHH----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 003711 342 ALTA----EVIKHKE--LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLED 415 (801)
Q Consensus 342 ~l~~----el~~l~~--l~~~l~~le~~~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 415 (801)
.... .++.+=. + .+...+...+.........+-.++......+...... .......+..-..+...-....+
T Consensus 232 ~~~~~~~~~~e~lf~~eL-~kf~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~~~-~~~~~~r~~~l~~L~~ay~~y~e 309 (342)
T cd08915 232 EYKKNGTTEFEDLFEEHL-KKFDKDLTYVEKTKKKQIELIKEIDAANQEFSQVKNS-NDSLDPREEALQDLEASYKKYLE 309 (342)
T ss_pred HhhccccchhHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccCceeEEeeeC
Q 003711 416 AEYKLIEGEKLRKRLHNTILELKGNIRVFCRVR 448 (801)
Q Consensus 416 l~~~l~~~e~~~~~l~~~l~~l~~~i~~~~r~~ 448 (801)
+...+.+...=...|...+..+...+..||.-|
T Consensus 310 l~~~l~eG~~FY~dL~~~~~~l~~~~~~f~~~R 342 (342)
T cd08915 310 LKENLNEGSKFYNDLIEKVNRLLEECEDFVNAR 342 (342)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 315
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=86.36 E-value=0.37 Score=51.84 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=31.3
Q ss_pred eeEEEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceeec
Q 003711 484 KHSFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 484 ~~~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
...|+||.-.. ..++...|.....+ ...-.+..--||-||++|+||||.|.
T Consensus 81 ~~~ytFdnFv~-g~~N~~A~aa~~~v-a~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFVV-GPSNRLAYAAAKAV-AENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhheee-CCchHHHHHHHHHH-HhccCCcCCcEEEECCCCCCHHHHHH
Confidence 45689998654 34444444332222 22222244568889999999999993
No 316
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=86.27 E-value=71 Score=36.95 Aligned_cols=288 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 151 EQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQS 230 (801)
Q Consensus 151 ~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~ 230 (801)
+.++-+++.+.+..++.+-.....-...+..++-++--++--+........-...........+....+++.+++..+..
T Consensus 861 qkElLele~E~egkldglieakeaeenkihK~egEltcaE~i~q~kdee~altdhekeasicl~eeKDqei~Eleailek 940 (1424)
T KOG4572|consen 861 QKELLELELENEGKLDGLIEAKEAEENKIHKKEGELTCAECIKQMKDEEEALTDHEKEASICLIEEKDQEIEELEAILEK 940 (1424)
T ss_pred hHHHHHHhhhcccccchHHHHHHHHhhHHHHhhhhhHHHHHHHHcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Q 003711 231 ANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKE-------------KSAIVENLSTLRGQYISLQEQ 297 (801)
Q Consensus 231 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e-------------~~~l~~~l~~l~~~~~~l~~~ 297 (801)
.+-..+++...-.-..+....+. .+..++++....++..+... ...+......+..+++.+..+
T Consensus 941 QNca~eeakqn~eis~Ed~kkLh---aE~daeLe~~~ael~eleqk~le~~eDea~aRh~kefE~~mrdhrselEe~kKe 1017 (1424)
T KOG4572|consen 941 QNCAHEEAKQNDEISEEDKKKLH---AEIDAELEKEFAELIELEQKALECKEDEAFARHEKEFEIEMRDHRSELEEKKKE 1017 (1424)
T ss_pred hhhhHHHHhhcCcccHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 003711 298 LSTYKASQDEAMRQKDALVH-EVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE--LAVSSEDLEARCASQSNQIRSL 374 (801)
Q Consensus 298 l~~~~~~~~~~~~~~~~l~~-e~~~l~~el~~l~~~~~~l~~e~~~l~~el~~l~~--l~~~l~~le~~~~~l~~~~~~l 374 (801)
++..-.++.+++.++.+... ++...+-..-....-..+++.++...+.+....+. ....-..++-...-+..+.+.|
T Consensus 1018 ~eaiineiee~eaeIiQekE~el~e~efka~d~Sd~r~kie~efAa~eaemdeik~~~~edrakqkei~k~L~ehelenL 1097 (1424)
T KOG4572|consen 1018 LEAIINEIEELEAEIIQEKEGELIEDEFKALDESDPRAKIEDEFAAIEAEMDEIKDGKCEDRAKQKEIDKILKEHELENL 1097 (1424)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHhhhccccCcchhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhhHHhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCce
Q 003711 375 SDQLAAAEEKLEVSDLSALETKTEFE-----GQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELKGNI 441 (801)
Q Consensus 375 ~~~l~~l~~~l~~~~~~~~~~~~~~~-----~~~~~l~~l~~~l~~l~~~l~~~e~~~~~l~~~l~~l~~~i 441 (801)
..++..+...+.....-.+-...+.. .....+.++-.+..+--.-+...-.....+++.-.+...++
T Consensus 1098 rnEieklndkIkdnne~~QVglae~nslmTiekDmcaselfneheeeS~ifdaa~nKiakiHe~AfEieknl 1169 (1424)
T KOG4572|consen 1098 RNEIEKLNDKIKDNNEGDQVGLAEENSLMTIEKDMCASELFNEHEEESGIFDAAGNKIAKIHEIAFEIEKNL 1169 (1424)
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHhccCCccchhHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHH
No 317
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=85.96 E-value=57 Score=35.53 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 003711 177 KSFASLQEKLAKEESD 192 (801)
Q Consensus 177 ~~l~~l~~~l~~l~~~ 192 (801)
..+..+..++..+...
T Consensus 64 ~~l~~~~~Ei~~L~~~ 79 (384)
T PF03148_consen 64 RELEELDEEIDLLEEE 79 (384)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 318
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=85.95 E-value=62 Score=35.90 Aligned_cols=11 Identities=9% Similarity=0.311 Sum_probs=6.9
Q ss_pred CCceEEcCCCc
Q 003711 459 EGKLISYPTTT 469 (801)
Q Consensus 459 ~~~~~~~~~~~ 469 (801)
.+.+|..|.+.
T Consensus 241 PDviV~LP~~k 251 (475)
T PRK10361 241 PDVIVRLPQGK 251 (475)
T ss_pred CeEEEECCCCC
Confidence 34667777664
No 319
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=85.77 E-value=51 Score=34.81 Aligned_cols=9 Identities=22% Similarity=0.471 Sum_probs=5.3
Q ss_pred HHHHHHHHh
Q 003711 505 EISQLVQSA 513 (801)
Q Consensus 505 ~~~~~v~~~ 513 (801)
.+.|+|+.+
T Consensus 437 Altplvdev 445 (558)
T PF15358_consen 437 ALTPLVDEV 445 (558)
T ss_pred HhHHHHHHH
Confidence 456666664
No 320
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=85.50 E-value=44 Score=33.81 Aligned_cols=234 Identities=11% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 202 REKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIV 281 (801)
Q Consensus 202 ~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~ 281 (801)
+.......+......+...+..+..........+.........+...............................+..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
T smart00283 1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAV 80 (262)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHH----HHHHHHHHHHHHhH
Q 003711 282 ENLSTLRGQYISLQEQLSTYKASQDEA------------------------MRQKDALVHEV----ASMRVELQQVRDDR 333 (801)
Q Consensus 282 ~~l~~l~~~~~~l~~~l~~~~~~~~~~------------------------~~~~~~l~~e~----~~l~~el~~l~~~~ 333 (801)
..+..+......+..-...+.....+. -..+..+-.+. .+....++......
T Consensus 81 ~~i~~i~~~~~~i~~~~~~i~~~a~~~~~la~na~ieA~~ag~~g~~~~~va~~I~~la~~t~~~~~ev~~~~~~~~~~~ 160 (262)
T smart00283 81 SAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLIKEIQEET 160 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHH
Q 003711 334 DHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHL 413 (801)
Q Consensus 334 ~~l~~e~~~l~~el~~l~~l~~~l~~le~~~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l 413 (801)
......+......+..... ........+......+..+...+..+............+.......+...+.++..-.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 237 (262)
T smart00283 161 NEAVAAMEESSSEVEEGVE---LVEETGEALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMS 237 (262)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccc
Q 003711 414 EDAEYKLIEGEKLRKRLHNTILELK 438 (801)
Q Consensus 414 ~~l~~~l~~~e~~~~~l~~~l~~l~ 438 (801)
.++......+...-..|...+..++
T Consensus 238 ~~~~~~~~~l~~~~~~l~~~~~~~~ 262 (262)
T smart00283 238 EEISAAAEELSGLAEELKELVEQFK 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
No 321
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=85.48 E-value=0.51 Score=48.07 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=28.7
Q ss_pred CCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceeec
Q 003711 496 DESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 496 ~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
...+...|..+..++..+- ..-.++-||++|+||||...
T Consensus 85 ~~~~~~~l~~~~~~~~~~~--~~~nl~l~G~~G~GKThLa~ 123 (254)
T COG1484 85 PGIDKKALEDLASLVEFFE--RGENLVLLGPPGVGKTHLAI 123 (254)
T ss_pred cchhHHHHHHHHHHHHHhc--cCCcEEEECCCCCcHHHHHH
Confidence 3466777777777777666 44456669999999999874
No 322
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=85.20 E-value=0.46 Score=54.52 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCCceEEEeeccCCcccceeec
Q 003711 506 ISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 506 ~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
....+..++...++.|+..|+||||||+||.
T Consensus 304 ~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 304 QKALFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 3345677778888999999999999999985
No 323
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=85.17 E-value=58 Score=34.86 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003711 165 EEELNLIIVELRKSFASLQEK 185 (801)
Q Consensus 165 i~~l~~~l~~l~~~l~~l~~~ 185 (801)
++.+..++..+......++..
T Consensus 93 le~l~~E~~~L~~~k~rle~~ 113 (421)
T KOG2685|consen 93 LEDLAAEIDDLLHEKRRLERA 113 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 324
>PRK06921 hypothetical protein; Provisional
Probab=85.14 E-value=0.62 Score=47.84 Aligned_cols=35 Identities=29% Similarity=0.291 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhc---CCceEEEeeccCCcccceeec
Q 003711 502 VFVEISQLVQSALD---GYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 502 ~~~~~~~~v~~~~~---G~n~~v~~yG~tgsGKt~tl~ 536 (801)
++.....+++.+-. +..-.|+.||++|+||||.+.
T Consensus 98 ~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 98 AYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLT 135 (266)
T ss_pred HHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHH
Confidence 44444456666542 335578899999999999984
No 325
>COG5283 Phage-related tail protein [Function unknown]
Probab=85.13 E-value=1e+02 Score=37.78 Aligned_cols=9 Identities=22% Similarity=0.678 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 003711 177 KSFASLQEK 185 (801)
Q Consensus 177 ~~l~~l~~~ 185 (801)
.-++.+.++
T Consensus 71 ~~~~~~kqe 79 (1213)
T COG5283 71 KAYEDLKQE 79 (1213)
T ss_pred HHHHHHHHH
Confidence 333333333
No 326
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=85.13 E-value=0.62 Score=42.48 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=19.1
Q ss_pred HHHHhhcCCceEEEeeccCCcccceee
Q 003711 509 LVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 509 ~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
+...+.......++.+|++|+|||+++
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333333434557888999999999876
No 327
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.03 E-value=0.56 Score=52.61 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCCceEEEeeccCCcccceeec
Q 003711 506 ISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 506 ~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
....+..++...++.|+..|+||||||+||.
T Consensus 230 ~~~~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 230 LLSRFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4446667777788889999999999999995
No 328
>PF15294 Leu_zip: Leucine zipper
Probab=85.03 E-value=47 Score=33.78 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 003711 399 FEGQKKLINELRNHL 413 (801)
Q Consensus 399 ~~~~~~~l~~l~~~l 413 (801)
+..-..++.+++.++
T Consensus 262 ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 262 LTKKNEQIKELRKRL 276 (278)
T ss_pred HHhccHHHHHHHHHh
Confidence 334444455554443
No 329
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=84.81 E-value=0.56 Score=44.95 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=21.3
Q ss_pred HHHHHhhcC-CceEEEeeccCCcccceeecc
Q 003711 508 QLVQSALDG-YKVCIFAYGQTGSGKTYTMMG 537 (801)
Q Consensus 508 ~~v~~~~~G-~n~~v~~yG~tgsGKt~tl~G 537 (801)
.+++.+-.+ ....++..++||||||++++.
T Consensus 14 ~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 14 RIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 344444444 466677788999999999964
No 330
>PRK12704 phosphodiesterase; Provisional
Probab=84.72 E-value=78 Score=36.00 Aligned_cols=35 Identities=9% Similarity=0.177 Sum_probs=14.4
Q ss_pred cCCC-CCCHHHHHHHHHHHHHhh-hcccCCCcccccc
Q 003711 757 ISPE-ASSVGESLCSLRFAARVN-ACEIGTPRRQTSM 791 (801)
Q Consensus 757 isp~-~~~~~etl~tL~fa~~~~-~~~~~~~~~~~~~ 791 (801)
|.|. .+|..-..=+-..|.+|- .+.+....+.|.-
T Consensus 474 v~~~~v~d~~~~~la~~i~~~ie~~~~ypg~ikvtvi 510 (520)
T PRK12704 474 VKPDKVDDLQAVRLARDIAKKIEEELQYPGQIKVTVI 510 (520)
T ss_pred eCCCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEE
Confidence 4454 333333333444555542 2333333444443
No 331
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=84.51 E-value=0.66 Score=51.41 Aligned_cols=53 Identities=19% Similarity=0.342 Sum_probs=35.0
Q ss_pred ceeEEEeceecCCCCChhhHHHHHHHHHHHhh--cCCc-eEEEeeccCCcccceeec
Q 003711 483 QKHSFSFDRVFMPDESQEDVFVEISQLVQSAL--DGYK-VCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 483 ~~~~f~fd~v~~~~~~~~~~~~~~~~~v~~~~--~G~n-~~v~~yG~tgsGKt~tl~ 536 (801)
-...|+||.-+.. .++...|..+..+..... .|.. -.+|-||++|+||||.+.
T Consensus 104 l~~~~tFdnFv~g-~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 104 LDPLMTFANFLVT-PENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQ 159 (445)
T ss_pred CCccccccceeeC-CcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHH
Confidence 3466899986643 456666666656654432 2321 247789999999999983
No 332
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=84.50 E-value=72 Score=35.41 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003711 364 CASQSNQIRSLSDQLAAA 381 (801)
Q Consensus 364 ~~~l~~~~~~l~~~l~~l 381 (801)
+.-++..+...+..+...
T Consensus 142 l~Pl~e~l~~f~~~v~~~ 159 (475)
T PRK10361 142 LSPLREQLDGFRRQVQDS 159 (475)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 333
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=84.49 E-value=79 Score=35.88 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=16.9
Q ss_pred cCCC-CCCHHHHHHHHHHHHHhh-hcccCCCccccccc
Q 003711 757 ISPE-ASSVGESLCSLRFAARVN-ACEIGTPRRQTSMR 792 (801)
Q Consensus 757 isp~-~~~~~etl~tL~fa~~~~-~~~~~~~~~~~~~~ 792 (801)
|.|. .+|..-..=+-..|.+|- .+.+....+.|.-|
T Consensus 468 v~~~~v~d~~~~~la~~i~~~ie~~~~ypg~ikvtvir 505 (514)
T TIGR03319 468 VKPEKISDDQAVVLARDIAKKIEEELEYPGQIKVTVIR 505 (514)
T ss_pred ecCCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEEe
Confidence 3455 344444444445566653 33444445555443
No 334
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=84.43 E-value=27 Score=30.52 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 358 EDLEARCASQSNQIRSLSDQLAAAEE 383 (801)
Q Consensus 358 ~~le~~~~~l~~~~~~l~~~l~~l~~ 383 (801)
..+...+...+.++...+.++..+.+
T Consensus 80 r~a~~dv~nkq~~l~AA~~~l~~~~~ 105 (136)
T PF11570_consen 80 RRAQKDVQNKQNKLKAAQKELNAADE 105 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333444444444444433333333
No 335
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.33 E-value=72 Score=35.26 Aligned_cols=9 Identities=22% Similarity=0.305 Sum_probs=3.8
Q ss_pred CCCCCCCCC
Q 003711 7 NKPPVLSNN 15 (801)
Q Consensus 7 ~~~~~~~~~ 15 (801)
++|+|++++
T Consensus 208 gepgRS~tn 216 (741)
T KOG4460|consen 208 GEPGRSPTN 216 (741)
T ss_pred CCcCCCCcc
Confidence 334444443
No 336
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=83.79 E-value=0.36 Score=46.46 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhcCCceEEEeeccCCcccceee
Q 003711 504 VEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 504 ~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
+.+..+++....|...+++.+|++|+|||+.+
T Consensus 10 ~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 10 ERLRDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHHHHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 34445555334666778999999999999986
No 337
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=83.73 E-value=0.85 Score=49.53 Aligned_cols=33 Identities=33% Similarity=0.609 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhcC-CceEEEeeccCCcccceee
Q 003711 503 FVEISQLVQSALDG-YKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 503 ~~~~~~~v~~~~~G-~n~~v~~yG~tgsGKt~tl 535 (801)
++.+...+..++.| ...+++.||++|+|||+++
T Consensus 24 ~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 24 IEELAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34455555555554 4568999999999999987
No 338
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=83.49 E-value=0.56 Score=41.40 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=13.1
Q ss_pred EEEeeccCCcccceee
Q 003711 520 CIFAYGQTGSGKTYTM 535 (801)
Q Consensus 520 ~v~~yG~tgsGKt~tl 535 (801)
.+--.|+||+||||+-
T Consensus 55 VlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFVS 70 (127)
T ss_pred EEEeecCCCCcHHHHH
Confidence 4557899999999974
No 339
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=83.42 E-value=0.42 Score=46.73 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=16.4
Q ss_pred ceEEEeeccCCcccceeec
Q 003711 518 KVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 518 n~~v~~yG~tgsGKt~tl~ 536 (801)
++.|+..|+||||||+++.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578899999999999983
No 340
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=83.32 E-value=0.64 Score=47.97 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=28.1
Q ss_pred ecCCCCChhhHHHH-----HHHHHHHhhcCCceEEEeeccCCcccceee
Q 003711 492 VFMPDESQEDVFVE-----ISQLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 492 v~~~~~~~~~~~~~-----~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
-|........+|.. +...+...+......++.+|++|+|||+++
T Consensus 12 pF~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 12 PFQLLPDPDFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCCCCCHHHhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 45544455555522 333444545555667888999999999987
No 341
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=83.23 E-value=0.38 Score=43.29 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=13.1
Q ss_pred ceEEEeeccCCcccceee
Q 003711 518 KVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 518 n~~v~~yG~tgsGKt~tl 535 (801)
+.+++.+|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 467899999999999887
No 342
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=83.21 E-value=0.61 Score=50.04 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=19.5
Q ss_pred hhcCCceEEEeeccCCcccceeec
Q 003711 513 ALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 513 ~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
++.-....|+..|+||||||+||.
T Consensus 129 ~~~~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 129 AIAPQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred HHhccCCEEEEECCCCCCHHHHHH
Confidence 334457889999999999999983
No 343
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=83.15 E-value=43 Score=31.82 Aligned_cols=7 Identities=14% Similarity=0.610 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 003711 90 EDVEALL 96 (801)
Q Consensus 90 ~e~~~l~ 96 (801)
.|++.|.
T Consensus 29 aEL~qli 35 (192)
T PF11180_consen 29 AELQQLI 35 (192)
T ss_pred HHHHHHH
Confidence 3444443
No 344
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=83.10 E-value=55 Score=33.06 Aligned_cols=10 Identities=30% Similarity=0.318 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 003711 178 SFASLQEKLA 187 (801)
Q Consensus 178 ~l~~l~~~l~ 187 (801)
++..|+..+.
T Consensus 167 kV~WLR~~L~ 176 (269)
T PF05278_consen 167 KVDWLRSKLE 176 (269)
T ss_pred chHHHHHHHH
Confidence 3444444444
No 345
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=82.89 E-value=45 Score=31.87 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=10.0
Q ss_pred hhhHHhHHHHHHHHHHHHHHHH
Q 003711 389 DLSALETKTEFEGQKKLINELR 410 (801)
Q Consensus 389 ~~~~~~~~~~~~~~~~~l~~l~ 410 (801)
...+..+..++..++..+.+++
T Consensus 140 h~rll~LWr~v~~lRr~f~elr 161 (182)
T PF15035_consen 140 HSRLLSLWREVVALRRQFAELR 161 (182)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444544444444444
No 346
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=82.61 E-value=0.85 Score=46.80 Aligned_cols=31 Identities=32% Similarity=0.390 Sum_probs=24.3
Q ss_pred HHHHHHHhhcCCceEEEeeccCCcccceeec
Q 003711 506 ISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 506 ~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
....+..++......|+-.|+||||||++|.
T Consensus 68 ~~~~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 68 NLEIFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 3445666776667788899999999999983
No 347
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=82.53 E-value=1.1 Score=49.32 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhcC-CceEEEeeccCCcccceee
Q 003711 502 VFVEISQLVQSALDG-YKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 502 ~~~~~~~~v~~~~~G-~n~~v~~yG~tgsGKt~tl 535 (801)
-++.+...+..++.| ....++-||++|+|||+++
T Consensus 38 e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 38 QIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 334455566566644 4467899999999999987
No 348
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=82.37 E-value=0.67 Score=49.83 Aligned_cols=26 Identities=35% Similarity=0.321 Sum_probs=19.6
Q ss_pred HHHHhhcCCceEEEeeccCCcccceee
Q 003711 509 LVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 509 ~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
+++.++. .++.|+..|+||||||++|
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHH
Confidence 3444443 4567888999999999998
No 349
>PRK06526 transposase; Provisional
Probab=82.36 E-value=0.6 Score=47.49 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=15.1
Q ss_pred EEEeeccCCcccceeec
Q 003711 520 CIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 520 ~v~~yG~tgsGKt~tl~ 536 (801)
.|+.||++|+||||++.
T Consensus 100 nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAI 116 (254)
T ss_pred eEEEEeCCCCchHHHHH
Confidence 37889999999999985
No 350
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.31 E-value=0.62 Score=46.21 Aligned_cols=27 Identities=37% Similarity=0.646 Sum_probs=23.3
Q ss_pred HHHHhh-cCCceEEEeeccCCcccceee
Q 003711 509 LVQSAL-DGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 509 ~v~~~~-~G~n~~v~~yG~tgsGKt~tl 535 (801)
||...+ .|+..-|+|.|.||.|||+.|
T Consensus 32 LV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 32 LVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 665555 899999999999999999865
No 351
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=82.15 E-value=73 Score=33.77 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=6.7
Q ss_pred HHhhcCCceEEEe
Q 003711 511 QSALDGYKVCIFA 523 (801)
Q Consensus 511 ~~~~~G~n~~v~~ 523 (801)
..+-.|..+.|..
T Consensus 252 ~~i~~G~~v~i~~ 264 (327)
T TIGR02971 252 NRVRVGQRATITS 264 (327)
T ss_pred hhCCCCCEEEEEE
Confidence 3334566666543
No 352
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=82.10 E-value=0.87 Score=47.99 Aligned_cols=29 Identities=31% Similarity=0.370 Sum_probs=21.4
Q ss_pred HHHHHHHhhcCCceEEEeeccCCcccceee
Q 003711 506 ISQLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 506 ~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
...++..++.+. ..|+..|+||||||++|
T Consensus 137 ~~~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 137 QREAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 446677777764 45555699999999876
No 353
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=82.07 E-value=0.7 Score=49.53 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=21.2
Q ss_pred HHHHhhcCCceEEEeeccCCcccceeec
Q 003711 509 LVQSALDGYKVCIFAYGQTGSGKTYTMM 536 (801)
Q Consensus 509 ~v~~~~~G~n~~v~~yG~tgsGKt~tl~ 536 (801)
.+..++.-....|+..|+||||||++|.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 4444454446779999999999999984
No 354
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=81.96 E-value=0.61 Score=46.70 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=22.3
Q ss_pred HHHHHHHhhcCCceEEEeeccCCcccceee
Q 003711 506 ISQLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 506 ~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
+..+...+-.|.+.+++.||+.|+|||+.|
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 445555555677889999999999999987
No 355
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=81.74 E-value=3.3 Score=43.98 Aligned_cols=64 Identities=25% Similarity=0.367 Sum_probs=40.5
Q ss_pred eecCCCCChhhHHHHHHHHHHHhhcC---CceEEEeeccCCccccee---------------------ecc----CCCCC
Q 003711 491 RVFMPDESQEDVFVEISQLVQSALDG---YKVCIFAYGQTGSGKTYT---------------------MMG----KPGHP 542 (801)
Q Consensus 491 ~v~~~~~~~~~~~~~~~~~v~~~~~G---~n~~v~~yG~tgsGKt~t---------------------l~G----~~~~~ 542 (801)
.||+. ++..+.+...+..+..| .+-.|+-.||.|||||+. +-| +|-+.
T Consensus 52 ~~~G~----~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e 127 (361)
T smart00763 52 DFFGM----EEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHE 127 (361)
T ss_pred hccCc----HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCcc
Confidence 56653 33344444444444444 456789999999999863 333 34333
Q ss_pred CCCCchHHHHHHHHHH
Q 003711 543 DLKGLIPRSLEQIFQT 558 (801)
Q Consensus 543 ~~~Gii~r~~~~lf~~ 558 (801)
.--|++|...++.|..
T Consensus 128 ~Pl~l~p~~~r~~~~~ 143 (361)
T smart00763 128 DPLHLFPDELREDLED 143 (361)
T ss_pred CCcccCCHHHHHHHHH
Confidence 3469999999998854
No 356
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=81.72 E-value=90 Score=34.53 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003711 399 FEGQKKLINELRNHLEDAEYKL 420 (801)
Q Consensus 399 ~~~~~~~l~~l~~~l~~l~~~l 420 (801)
+...+.++..++.++..++..+
T Consensus 229 ~~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 229 LETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555
No 357
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=81.70 E-value=0.79 Score=43.29 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=21.9
Q ss_pred HHHHHhhcCCceEEEeeccCCcccceeecc
Q 003711 508 QLVQSALDGYKVCIFAYGQTGSGKTYTMMG 537 (801)
Q Consensus 508 ~~v~~~~~G~n~~v~~yG~tgsGKt~tl~G 537 (801)
.++..++.|.+ ++..|+||||||.....
T Consensus 6 ~~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 6 EAIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 35566677777 77899999999998753
No 358
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=81.64 E-value=1.2 Score=51.88 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=4.8
Q ss_pred HHhhhhhhhhcc
Q 003711 426 LRKRLHNTILEL 437 (801)
Q Consensus 426 ~~~~l~~~l~~l 437 (801)
+++.+..+|-.+
T Consensus 385 ~rk~i~k~lPkl 396 (619)
T PF03999_consen 385 ERKRIQKKLPKL 396 (619)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhHH
Confidence 334444444333
No 359
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.08 E-value=91 Score=34.15 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=8.4
Q ss_pred ccchHHHHHHHHHHH
Q 003711 698 DRLKETQAINKSLSS 712 (801)
Q Consensus 698 ~~~~e~~~in~sl~~ 712 (801)
..+.-...||.-|.|
T Consensus 561 ~~lql~~eVn~KlqA 575 (613)
T KOG0992|consen 561 VNLQLSLEVNVKLQA 575 (613)
T ss_pred chHHHHHHHHHHHHH
Confidence 444556666665554
No 360
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=81.00 E-value=78 Score=33.33 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003711 145 NALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEK 185 (801)
Q Consensus 145 ~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~ 185 (801)
+-+++-+-+++.++.++..-.+--+.++..|++++...+++
T Consensus 299 etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeer 339 (455)
T KOG3850|consen 299 ETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEER 339 (455)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444443332333333444444444444433
No 361
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=80.99 E-value=1.1e+02 Score=34.87 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 003711 710 LSSLSDVIFAL 720 (801)
Q Consensus 710 l~~L~~~i~~l 720 (801)
|..|.++++.+
T Consensus 439 l~~le~i~~~~ 449 (514)
T TIGR03319 439 LEKLEEIANSF 449 (514)
T ss_pred HHHHHHHHHhC
Confidence 44444444333
No 362
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=80.79 E-value=88 Score=33.79 Aligned_cols=154 Identities=9% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 224 AQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKA 303 (801)
Q Consensus 224 l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~ 303 (801)
.+.-+...+.-+..+ ..........-++.++..++.++...+..+..++.+-.-+ +...........+..++.
T Consensus 149 an~l~~~~~~~i~~~--~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~-----d~~~~~~~~~~~i~~L~~ 221 (362)
T TIGR01010 149 NQRLLKEGERLINRL--NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVF-----DPKAQSSAQLSLISTLEG 221 (362)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-----ChHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 304 SQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIK-----HKELAVSSEDLEARCASQSNQIRSLSDQL 378 (801)
Q Consensus 304 ~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~~e~~~l~~el~~-----l~~l~~~l~~le~~~~~l~~~~~~l~~~l 378 (801)
++.+++.++..+......-.-.+..++.++..+..++.....++.. +.....++..|+.+.+-.+.....+-..+
T Consensus 222 ~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~ 301 (362)
T TIGR01010 222 ELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSL 301 (362)
T ss_pred HHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 003711 379 AAAEEK 384 (801)
Q Consensus 379 ~~l~~~ 384 (801)
+...-+
T Consensus 302 ~~a~~~ 307 (362)
T TIGR01010 302 QQTRVE 307 (362)
T ss_pred HHHHHH
No 363
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=80.64 E-value=38 Score=34.15 Aligned_cols=11 Identities=9% Similarity=0.078 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 003711 370 QIRSLSDQLAA 380 (801)
Q Consensus 370 ~~~~l~~~l~~ 380 (801)
..-+|-+++.-
T Consensus 122 DN~kLYEKiRy 132 (248)
T PF08172_consen 122 DNVKLYEKIRY 132 (248)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 364
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=80.60 E-value=1.1 Score=51.13 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=22.4
Q ss_pred CceEEEeeccCCcccceee--------ccCCCCCCCCCch
Q 003711 517 YKVCIFAYGQTGSGKTYTM--------MGKPGHPDLKGLI 548 (801)
Q Consensus 517 ~n~~v~~yG~tgsGKt~tl--------~G~~~~~~~~Gii 548 (801)
.|-.|+.+|+||||||+-+ ||....++ .|+|
T Consensus 270 ~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~-~gmI 308 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSS-PGMI 308 (1172)
T ss_pred cCCeEEEecCCCCCccccchHHHHHcccCCccCCC-CCee
Confidence 3556777899999999977 66664443 4665
No 365
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=80.46 E-value=71 Score=32.54 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHHHH
Q 003711 135 DYAFEHERLRNALELSE 151 (801)
Q Consensus 135 ~~~~e~~~l~~~l~~~~ 151 (801)
....++++|..-+.+++
T Consensus 32 QKV~EVEKLsqTi~ELE 48 (351)
T PF07058_consen 32 QKVLEVEKLSQTIRELE 48 (351)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 366
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=80.40 E-value=0.73 Score=53.88 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhcC--CceEEEeeccCCcccceee
Q 003711 504 VEISQLVQSALDG--YKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 504 ~~~~~~v~~~~~G--~n~~v~~yG~tgsGKt~tl 535 (801)
..|..++..++.| -+.+||.||++|+|||.|+
T Consensus 765 eeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 765 KEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 3456667777654 4457889999999999987
No 367
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=80.34 E-value=0.62 Score=45.38 Aligned_cols=16 Identities=50% Similarity=0.611 Sum_probs=14.6
Q ss_pred EEEeeccCCcccceee
Q 003711 520 CIFAYGQTGSGKTYTM 535 (801)
Q Consensus 520 ~v~~yG~tgsGKt~tl 535 (801)
.|+.+||||+|||+|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 5788999999999998
No 368
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=80.16 E-value=1.2e+02 Score=34.94 Aligned_cols=6 Identities=33% Similarity=0.479 Sum_probs=2.2
Q ss_pred hhhhhh
Q 003711 429 RLHNTI 434 (801)
Q Consensus 429 ~l~~~l 434 (801)
.+..+|
T Consensus 655 ~ld~qI 660 (1480)
T COG3096 655 ALDEEI 660 (1480)
T ss_pred HHHHHH
Confidence 333333
No 369
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=79.47 E-value=1.1e+02 Score=33.96 Aligned_cols=11 Identities=27% Similarity=0.175 Sum_probs=6.0
Q ss_pred HhhcCCceEEE
Q 003711 512 SALDGYKVCIF 522 (801)
Q Consensus 512 ~~~~G~n~~v~ 522 (801)
.+--|..+.|.
T Consensus 307 ~v~~G~~v~v~ 317 (421)
T TIGR03794 307 KIRPGMSVQIT 317 (421)
T ss_pred hCCCCCEEEEE
Confidence 34456666654
No 370
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=79.45 E-value=0.67 Score=41.75 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=14.7
Q ss_pred EEeeccCCcccceeecc
Q 003711 521 IFAYGQTGSGKTYTMMG 537 (801)
Q Consensus 521 v~~yG~tgsGKt~tl~G 537 (801)
++.+|+||||||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57899999999998854
No 371
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=79.40 E-value=0.71 Score=41.69 Aligned_cols=16 Identities=44% Similarity=0.580 Sum_probs=0.0
Q ss_pred EEEeeccCCcccceee
Q 003711 520 CIFAYGQTGSGKTYTM 535 (801)
Q Consensus 520 ~v~~yG~tgsGKt~tl 535 (801)
.++-+|++|||||+++
T Consensus 4 ~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 4 VILIVGPPGSGKTTLA 19 (148)
T ss_pred EEEEECCCCCcHHHHH
No 372
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=79.39 E-value=23 Score=40.48 Aligned_cols=90 Identities=16% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 240 DMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAI-----------VENLSTLRGQYISLQEQLSTYKASQDEA 308 (801)
Q Consensus 240 ~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l-----------~~~l~~l~~~~~~l~~~l~~~~~~~~~~ 308 (801)
..+..++.++..++.++..++.++..++..+.-++.-.... ...+.++.+-...+..++.++.....++
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREA 150 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003711 309 MRQKDALVHEVASMRVELQQV 329 (801)
Q Consensus 309 ~~~~~~l~~e~~~l~~el~~l 329 (801)
+.+++.+.+++..++.++..+
T Consensus 151 ~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 151 ERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
No 373
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.34 E-value=91 Score=33.09 Aligned_cols=325 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003711 107 NYKERCENMMDYIKRLRLCIKWFQELEGD--YAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQE 184 (801)
Q Consensus 107 ~~~~~ie~l~~~i~~l~~~~~~l~~~~~~--~~~e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~ 184 (801)
.|+.+..++......++..+..++..... +...+++-.....+...++.++..-+..+|.+++..+...+..|..+..
T Consensus 104 ~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k 183 (542)
T KOG0993|consen 104 NLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSK 183 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHH----------------------------------------------H
Q 003711 185 KLAKEESDKLAALDSLAREKET------RLNME----------------------------------------------R 212 (801)
Q Consensus 185 ~l~~l~~~~~~~~~~~~~~~~~------~~~l~----------------------------------------------~ 212 (801)
.....-..+.....-+.-.+.. +..+. +
T Consensus 184 ~~~h~a~slh~~t~lL~L~RD~s~~l~~leel~gd~gps~d~Fa~s~d~s~slqs~tLGggvga~s~mpq~rk~mtpeqe 263 (542)
T KOG0993|consen 184 AKHHKAESLHVFTDLLNLARDKSEQLRQLEELDGDAGPSGDDFAQSTDTSGSLQSKTLGGGVGADSVMPQERKAMTPEQE 263 (542)
T ss_pred hhcccchHHHHHHHHHHHhcCCchhhhHHHHhccCCCCCcchhhhccccccchhhhcccCCccccccCchhhhcCChhHH
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 003711 213 SHASLSEDLGKAQEELQS--------ANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDA----AHESIKRGEKEKSAI 280 (801)
Q Consensus 213 ~~~~l~~el~~l~~~l~~--------~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~----l~~~~~~l~~e~~~l 280 (801)
+...|-......-..+-. ......-+..+-..++..+.++-.....++.-+.. +...+..+-.+...-
T Consensus 264 etasLlss~t~~~e~~y~~p~gy~lv~dt~w~~lqkegrqlqrdlE~~~~~r~ele~~~~qs~ed~t~q~~~ll~~~q~s 343 (542)
T KOG0993|consen 264 ETASLLSSTTKSAEELYSEPIGYPLVLDTLWFILQKEGRQLQRDLEELIETRAELEHTEQQSQEDITVQRAQLLEERQHS 343 (542)
T ss_pred HHHHHHhhcccchhhhcCCCCCCCcChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHH-HHHHHH
Q 003711 281 VENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQL-SQVQALTAEVIKHKE-LAVSSE 358 (801)
Q Consensus 281 ~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~-~e~~~l~~el~~l~~-l~~~l~ 358 (801)
...+..+...+..++.++......+....+.+..--..+.....-+.....--...+ .+...+-.....+.. +.....
T Consensus 344 E~ll~tlq~~iSqaq~~vq~qma~lv~a~e~i~~e~~rl~q~nd~l~~~~~l~t~~Qq~e~~~lp~ave~l~ql~~~~r~ 423 (542)
T KOG0993|consen 344 EDLLVTLQAEISQAQSEVQKQMARLVVASETIADEDSRLRQINDLLTTVGELETQVQQAEVQNLPAAVEQLAQLYKQRRT 423 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhHhhhhcchhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003711 359 DLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLH 431 (801)
Q Consensus 359 ~le~~~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~e~~~~~l~ 431 (801)
++...+.....-...+..++..++.++.........++-++.....+......-+..++.+...+......++
T Consensus 424 ~~~~~l~a~ehv~e~l~~ei~~L~eqle~e~~~~~~le~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eqi~ 496 (542)
T KOG0993|consen 424 SLQQELDASEHVQEDLVKEIQSLQEQLEKERQSEQELEWQLDDDVEQCSNCDASFASLKVEPERLHQQCEQIF 496 (542)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
No 374
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=79.33 E-value=1 Score=48.26 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=0.0
Q ss_pred EeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceee
Q 003711 488 SFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 488 ~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
.||.+++ +..+...+..++.. |....++.|||+|+|||+++
T Consensus 13 ~~~~~~g----~~~~~~~L~~~~~~---~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 13 LLEDILG----QDEVVERLSRAVDS---PNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred cHHHhcC----CHHHHHHHHHHHhC---CCCceEEEECCCCCCHHHHH
No 375
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=79.23 E-value=1.2 Score=46.57 Aligned_cols=31 Identities=29% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCceEEEeeccCCcccceee
Q 003711 504 VEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 504 ~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
.....++..++. ....|+..|+||||||++|
T Consensus 119 ~~~~~~L~~~v~-~~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 119 AAQRDVLREAVL-ARKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHHHH-cCCeEEEECCCCCCHHHHH
No 376
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.12 E-value=29 Score=38.01 Aligned_cols=79 Identities=16% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 228 LQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIK-RGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQD 306 (801)
Q Consensus 228 l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~-~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~ 306 (801)
+..+-.++.+++.++..+..+.+.+..+.+.|++....+..++. .++.+..++..+.+.++.+...++..+..+..++.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 377
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.10 E-value=29 Score=38.01 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 221 LGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDA-AHESIKRGEKEKSAIVENLSTLRGQYISLQEQLS 299 (801)
Q Consensus 221 l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~-l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~ 299 (801)
+..+-.++.+++.++..+..+.+.+.++.+.|++....+..++.. +.....++..+.+.+..++..++..+..++.+++
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HH
Q 003711 300 TY 301 (801)
Q Consensus 300 ~~ 301 (801)
..
T Consensus 141 ~~ 142 (472)
T TIGR03752 141 GV 142 (472)
T ss_pred hc
No 378
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=79.09 E-value=76 Score=32.04 Aligned_cols=156 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHhHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 003711 94 ALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIV 173 (801)
Q Consensus 94 ~l~~e~~~~~~~~~~~~~ie~l~~~i~~l~~~~~~l~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~ 173 (801)
.++-|+---+-+.-++.......--+..+......+.........-+.++..++...-.++..-+..+..++..+-.+..
T Consensus 204 ~lEvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr 283 (384)
T KOG0972|consen 204 KLEVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFR 283 (384)
T ss_pred HHHHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 174 ELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSED------LGKAQEELQSANQRIASINDMYKLLQE 247 (801)
Q Consensus 174 ~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~e------l~~l~~~l~~~~~~l~~l~~~~~~l~~ 247 (801)
.+..++..++.....+......-...+.+....+..+.+++.+--.. +..++..+..+++....+.-++.-+..
T Consensus 284 ~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~mnv~igv~eh 363 (384)
T KOG0972|consen 284 RATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTMNVQIGVFEH 363 (384)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhheehhhH
Q ss_pred HH
Q 003711 248 YN 249 (801)
Q Consensus 248 ~~ 249 (801)
.+
T Consensus 364 s~ 365 (384)
T KOG0972|consen 364 SI 365 (384)
T ss_pred HH
No 379
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=79.07 E-value=6.6 Score=42.36 Aligned_cols=126 Identities=17% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-
Q 003711 257 TKLQKDIDAAHESIKRGEKEKSAIVEN-LSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRD- 334 (801)
Q Consensus 257 ~~l~~el~~l~~~~~~l~~e~~~l~~~-l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~- 334 (801)
..+++..+....++.....++.+.... +..+....+....++.++...+.++..+++.++........++........
T Consensus 58 ~qLrE~~et~~KE~~~~eKe~kE~~~K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~ 137 (370)
T PF02994_consen 58 NQLREQDETPEKELKNKEKELKENIIKNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLEN 137 (370)
T ss_dssp ------------------------------------------------------------H-------------------
T ss_pred HHHHHhhhhhhhhhhhhhhhhhHhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHH
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 335 ---HQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKL 385 (801)
Q Consensus 335 ---~l~~e~~~l~~el~~l~~l~~~l~~le~~~~~l~~~~~~l~~~l~~l~~~l 385 (801)
.+...+..++..+..+.. .+.++...+..+...+..+...+.++....
T Consensus 138 ~~~~l~~Ri~e~Eeris~lEd---~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 138 IDESLNSRIDELEERISELED---RIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp ------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
No 380
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=78.99 E-value=52 Score=30.06 Aligned_cols=100 Identities=19% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Q 003711 211 ERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNT--------------------------------- 257 (801)
Q Consensus 211 ~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~--------------------------------- 257 (801)
..++.++..++..+..+++.+..++..+...+..++..+..++.-..
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 258 ------KLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMR 310 (801)
Q Consensus 258 ------~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~ 310 (801)
...+-++.+.++++.+...+..+...+..+...+..+..++..+.........
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~~~ 143 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAAQK 143 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 381
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=78.96 E-value=1.3 Score=42.77 Aligned_cols=31 Identities=29% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCceEEEeeccCCcccceee
Q 003711 504 VEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 504 ~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
..+.+++..++.. ...++-.|++|||||++|
T Consensus 12 ~~~~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 12 PLQAAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHHHHhC-CCEEEEECCCCCCHHHHH
No 382
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=78.95 E-value=41 Score=28.86 Aligned_cols=81 Identities=19% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH
Q 003711 250 SSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTL----------------------RGQYISLQEQLSTYKASQDE 307 (801)
Q Consensus 250 ~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l----------------------~~~~~~l~~~l~~~~~~~~~ 307 (801)
..+...+..++.++..+...+..+..++.+...-+.++ ..-...+...++.+...+..
T Consensus 2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~ 81 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKR 81 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003711 308 AMRQKDALVHEVASMRVELQQVR 330 (801)
Q Consensus 308 ~~~~~~~l~~e~~~l~~el~~l~ 330 (801)
+...+..+..++..++.++.++.
T Consensus 82 l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 82 LERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
No 383
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=78.94 E-value=97 Score=33.19 Aligned_cols=123 Identities=15% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 003711 250 SSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDA---LVHEVASMRVEL 326 (801)
Q Consensus 250 ~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~---l~~e~~~l~~el 326 (801)
..++..+..++.++...+..+..++..+......+...+.++...+..++..+..+.....-.+. -..+++..+..+
T Consensus 82 ~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~ 161 (346)
T PRK10476 82 RPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQ 161 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 327 QQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIR 372 (801)
Q Consensus 327 ~~l~~~~~~l~~e~~~l~~el~~l~~l~~~l~~le~~~~~l~~~~~ 372 (801)
...+..+.....++......+..+......+...+..+...+..+.
T Consensus 162 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~l~~a~~~l~ 207 (346)
T PRK10476 162 RDAEVSLNQALLQAQAAAAAVGGVDALVAQRAAREAALAIAELHLE 207 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
No 384
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=78.93 E-value=1.1 Score=43.82 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCceEEEeeccCCcccceee
Q 003711 507 SQLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 507 ~~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
...|..++...+-.++..|+.||||||+|
T Consensus 7 ~~a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 7 REAVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCHHHHH
No 385
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=78.66 E-value=25 Score=40.22 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 212 RSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSL-----------QHYNTKLQKDIDAAHESIKRGEKEKSAI 280 (801)
Q Consensus 212 ~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l-----------~~~~~~l~~el~~l~~~~~~l~~e~~~l 280 (801)
..+..++.++..++.++..+..++..++..+.-+....... ......+.+-+..+..++..+...+.++
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREA 150 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003711 281 VENLSTLRGQYISLQEQLSTY 301 (801)
Q Consensus 281 ~~~l~~l~~~~~~l~~~l~~~ 301 (801)
..++.+++.++..++.++..+
T Consensus 151 ~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 151 ERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
No 386
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=78.54 E-value=92 Score=32.73 Aligned_cols=258 Identities=14% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 127 KWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFAS-LQEKLAKEESDKLAALDSLAREKE 205 (801)
Q Consensus 127 ~~l~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~-l~~~l~~l~~~~~~~~~~~~~~~~ 205 (801)
..+++....+...++..+.+.+..+..+..++.-.......++...+.--..++. .++.++.+......-.+.+.+.++
T Consensus 294 ~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKd 373 (593)
T KOG4807|consen 294 EALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKD 373 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 206 TR--LNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVEN 283 (801)
Q Consensus 206 ~~--~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~ 283 (801)
.+ .+....+..++.-......+++ ..++.-+........-......++..++.+++-+.++..+.=-++..+...
T Consensus 374 rLLAEETAATiSAIEAMKnAhrEEme---RELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqa 450 (593)
T KOG4807|consen 374 RLLAEETAATISAIEAMKNAHREEME---RELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQA 450 (593)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHH---HHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhHHHHHHHHHH
Q 003711 284 LSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVA---------------------SMRVELQQVRDDRDHQLSQVQA 342 (801)
Q Consensus 284 l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~---------------------~l~~el~~l~~~~~~l~~e~~~ 342 (801)
++.-+.-+...+.+-.++.....++...+..--..+. +++--+.-...++.-+..++..
T Consensus 451 lEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEiss 530 (593)
T KOG4807|consen 451 LEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISS 530 (593)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003711 343 LTAEVIKHKE--------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEV 387 (801)
Q Consensus 343 l~~el~~l~~--------l~~~l~~le~~~~~l~~~~~~l~~~l~~l~~~l~~ 387 (801)
|..++..... .+.-+-+|.--.....-.|..|+..+....+.+.+
T Consensus 531 LkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKEqLkaAteALgE 583 (593)
T KOG4807|consen 531 LKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKEQLKAATEALGE 583 (593)
T ss_pred HHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHhcc
No 387
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=78.43 E-value=17 Score=36.18 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCceeEEeeeCCCCCCCCCCC
Q 003711 379 AAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELKGNIRVFCRVRPLLPDDSSGS 458 (801)
Q Consensus 379 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~e~~~~~l~~~l~~l~~~i~~~~r~~~~~~~e~~~~ 458 (801)
+.+....+++.....-+..++.-++.++..+.-++.....++.+... +-.+..+|--|-+++-.+..+.|....|..|+
T Consensus 16 e~~~mste~i~~rtrlldnEirI~~sev~ri~he~~~~~ekIkeN~E-kIk~Nk~LPYLV~NvvE~ld~~~~~~~e~sg~ 94 (424)
T KOG0652|consen 16 EILSMSTEEIISRTRLLDNEIRIMKSEVQRINHELQAMKEKIKENTE-KIKVNKQLPYLVSNVVELLDMDPNDDEEDSGA 94 (424)
T ss_pred hhhhccHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHhhHH-HhhccccCchHHhhHHHHhcCCcccchhccCC
Q ss_pred CCceEEcCCCccccccceeeecCCceeEEEeceecC-----------------------------------CCCChhhHH
Q 003711 459 EGKLISYPTTTEALGRGIDIMQNGQKHSFSFDRVFM-----------------------------------PDESQEDVF 503 (801)
Q Consensus 459 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~fd~v~~-----------------------------------~~~~~~~~~ 503 (801)
...-++...+.|.+.-....+......-+..+ -+....+-|
T Consensus 95 ----n~~ld~qrkgkcaViktStRqt~fLPvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~Y 170 (424)
T KOG0652|consen 95 ----NIDLDSQRKGKCAVIKTSTRQTYFLPVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQY 170 (424)
T ss_pred ----cccccccccceeEEEecccceeeeeeeecccChhhCCCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccc
Q ss_pred HH-------HHHHHHHhhcCCce-------------EEEeeccCCcccc
Q 003711 504 VE-------ISQLVQSALDGYKV-------------CIFAYGQTGSGKT 532 (801)
Q Consensus 504 ~~-------~~~~v~~~~~G~n~-------------~v~~yG~tgsGKt 532 (801)
.. |..||+.++---.. .|+.|||.|+|||
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKT 219 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKT 219 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHH
No 388
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=78.38 E-value=1.1e+02 Score=33.55 Aligned_cols=162 Identities=8% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 145 NALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEE--SDKLAALDSLAREKETRLNMERSHASLSEDLG 222 (801)
Q Consensus 145 ~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l~~l~--~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~ 222 (801)
.++..++.++.-+..-...........+..+..++..++..--... ....-+......+......+-..+.+|+.-++
T Consensus 151 ~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE 230 (424)
T PF03915_consen 151 KEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVE 230 (424)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 223 KAQEELQS-----ANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDA-AHESIKRGEKEKSAIVENLSTLRGQYISLQE 296 (801)
Q Consensus 223 ~l~~~l~~-----~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~-l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~ 296 (801)
.+..++.. ...+++.+..++..+...+..++..+...+-.+.. .+.+++..-.+ +.-+..-+.-+..|+.
T Consensus 231 ~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eE----QqfL~~QedL~~DL~e 306 (424)
T PF03915_consen 231 DLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEE----QQFLKLQEDLLSDLKE 306 (424)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 003711 297 QLSTYKASQDEAMR 310 (801)
Q Consensus 297 ~l~~~~~~~~~~~~ 310 (801)
.+..+...+.-++.
T Consensus 307 Dl~k~~etf~lveq 320 (424)
T PF03915_consen 307 DLKKASETFALVEQ 320 (424)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
No 389
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=78.37 E-value=1.4 Score=49.77 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCc--eEEEeeccCCcccceee
Q 003711 504 VEISQLVQSALDGYK--VCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 504 ~~~~~~v~~~~~G~n--~~v~~yG~tgsGKt~tl 535 (801)
++|...++..+.|.. -.++.+||+|||||.|+
T Consensus 29 ~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 29 EEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHHHhccCCCcceEEEECCCCCCHHHHH
No 390
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=78.14 E-value=42 Score=28.59 Aligned_cols=82 Identities=22% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHH
Q 003711 313 DALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-------------------LAVSSEDLEARCASQSNQIRS 373 (801)
Q Consensus 313 ~~l~~e~~~l~~el~~l~~~~~~l~~e~~~l~~el~~l~~-------------------l~~~l~~le~~~~~l~~~~~~ 373 (801)
..+..+...+..++..+..++..+..++..+..-+..+.. ...-+..++..+..+..++..
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhHHh
Q 003711 374 LSDQLAAAEEKLEVSDLSALE 394 (801)
Q Consensus 374 l~~~l~~l~~~l~~~~~~~~~ 394 (801)
++..+..+..++..+...+..
T Consensus 81 l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 391
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=78.11 E-value=29 Score=26.70 Aligned_cols=63 Identities=16% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 227 ELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRG 289 (801)
Q Consensus 227 ~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~ 289 (801)
++..+..+++.+-.....++.+...+..+...+..+-..+..+.......++.+...+..++.
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
No 392
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=78.05 E-value=0.88 Score=40.25 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=0.0
Q ss_pred EEEeeccCCccccee
Q 003711 520 CIFAYGQTGSGKTYT 534 (801)
Q Consensus 520 ~v~~yG~tgsGKt~t 534 (801)
+|+-.|++|||||+.
T Consensus 1 vI~I~G~~gsGKST~ 15 (121)
T PF13207_consen 1 VIIISGPPGSGKSTL 15 (121)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred CEEEECCCCCCHHHH
No 393
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=77.99 E-value=35 Score=27.53 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHhHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 003711 92 VEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLI 171 (801)
Q Consensus 92 ~~~l~~e~~~~~~~~~~~~~ie~l~~~i~~l~~~~~~l~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~ 171 (801)
+..|+.- ++.+++.+..+...++..-+.+.........++..++..+-+++..+..++.....+|..|+.+
T Consensus 2 l~elLd~---------ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~e 72 (79)
T PF08581_consen 2 LNELLDA---------IRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRE 72 (79)
T ss_dssp HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 003711 172 IVE 174 (801)
Q Consensus 172 l~~ 174 (801)
++.
T Consensus 73 Le~ 75 (79)
T PF08581_consen 73 LEQ 75 (79)
T ss_dssp HCH
T ss_pred HHh
No 394
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=77.94 E-value=0.54 Score=46.49 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=0.0
Q ss_pred EEeeccCCcccceeeccCCCCCCCCCchHHHHH
Q 003711 521 IFAYGQTGSGKTYTMMGKPGHPDLKGLIPRSLE 553 (801)
Q Consensus 521 v~~yG~tgsGKt~tl~G~~~~~~~~Gii~r~~~ 553 (801)
+...|++|||||+|| .+|.|.+.
T Consensus 30 ~vliGpSGsGKTTtL----------kMINrLie 52 (309)
T COG1125 30 LVLIGPSGSGKTTTL----------KMINRLIE 52 (309)
T ss_pred EEEECCCCCcHHHHH----------HHHhcccC
No 395
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.93 E-value=1.1e+02 Score=33.44 Aligned_cols=351 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHH
Q 003711 107 NYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALR-NKEEELNLIIVELRKSFASLQEK 185 (801)
Q Consensus 107 ~~~~~ie~l~~~i~~l~~~~~~l~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~l~-~ei~~l~~~l~~l~~~l~~l~~~ 185 (801)
++-..+.........|...-..+.-.. .+..++.....-+..+..+.+.....+. .+++.++..+.-+..+--.-+.-
T Consensus 71 ~~~~~l~~vt~~~~ql~kEK~~~~m~n-~~~~e~~~k~~~~kdik~E~ea~~k~l~q~~~d~l~~~~~fle~Ek~d~e~~ 149 (613)
T KOG0992|consen 71 ELTTKLSTVTQGLQQLQKEKTRVDMTN-EILLESVRKAQTQKDIKCEEEAKIKNLQQIEIDKLKNLLSFLEQEKVDREGL 149 (613)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 003711 186 LAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKL------ 259 (801)
Q Consensus 186 l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l------ 259 (801)
+.....++..+...+......-.-++....+++......+..-..+..-...++....-+.+.+...+......
T Consensus 150 m~~~~~q~Esls~~le~~~~~~~~~~kl~ie~e~~~h~~qq~e~~l~t~~a~~e~~nrh~~erlk~~~~s~~e~l~kl~~ 229 (613)
T KOG0992|consen 150 MRQQTQQIESLSEELERLRPIESVAEKLRIELEQLRHSTQQEENLLTTTLAAVEEENRHLKERLKIVEESRLESLGKLNS 229 (613)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003711 260 QKDIDAAHESIKRGEKEKSAIVENLSTLR----GQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDH 335 (801)
Q Consensus 260 ~~el~~l~~~~~~l~~e~~~l~~~l~~l~----~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~ 335 (801)
+.++..+......++..++.+.......+ .++..+..+...+......-..+....-..+..+-+.......++.+
T Consensus 230 EqQlq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~~~e~~e~rk~v~k~~~l~q~~~~~~~eL~K 309 (613)
T KOG0992|consen 230 EQQLQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQVAEETTEKRKAVKKRDDLIQSRKQVSFELEK 309 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 003711 336 QLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLED 415 (801)
Q Consensus 336 l~~e~~~l~~el~~l~~l~~~l~~le~~~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 415 (801)
..+++........-+.+ ...++.-.+...+.+. ..+.++..+...+............-+.....+..+....-..
T Consensus 310 ~kde~~~n~~~~~lie~---lq~el~~al~~c~eeN-~~~t~~n~e~~~lq~~etek~ee~tlla~~~dr~se~~e~teq 385 (613)
T KOG0992|consen 310 AKDEIKQNDDKVKLIEE---LQDELSVALKECREEN-KIETQVNFERNKLQNEETEKKEEKTLLAAADDRFSEYSELTEQ 385 (613)
T ss_pred HHHHHhccchHHHHHHH---HHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHhhhhhhhhcccCceeEEeeeCCCCCCCCCCCCCce
Q 003711 416 -AEYKLIEGEKLRKRLHNTILELKGNIRVFCRVRPLLPDDSSGSEGKL 462 (801)
Q Consensus 416 -l~~~l~~~e~~~~~l~~~l~~l~~~i~~~~r~~~~~~~e~~~~~~~~ 462 (801)
++..-.......+..-..|.+|...+..|-|-..-...+.+++.+..
T Consensus 386 kleelk~~f~a~q~K~a~tikeL~~El~~yrr~i~~~~s~ia~~~~e~ 433 (613)
T KOG0992|consen 386 KLEELKVQFTAKQEKHAETIKELEIELEEYRRAILRNASEIAQYEDEL 433 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCccc
No 396
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=77.78 E-value=1.4 Score=46.26 Aligned_cols=31 Identities=35% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCceEEEeeccCCcccceee
Q 003711 504 VEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 504 ~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
.+...++..++.+.. .|+-.|+||||||++|
T Consensus 131 ~~~~~~L~~~v~~~~-nilI~G~tGSGKTTll 161 (323)
T PRK13833 131 EAQASVIRSAIDSRL-NIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHHHHHcCC-eEEEECCCCCCHHHHH
No 397
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=77.78 E-value=7.7 Score=41.87 Aligned_cols=125 Identities=14% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 003711 223 KAQEELQSANQRIASINDMYKL-LQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQL--- 298 (801)
Q Consensus 223 ~l~~~l~~~~~~l~~l~~~~~~-l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l--- 298 (801)
.+++......+++.....++.. ....+..+.........++..+...+.++..++..+.....+....+..+...+
T Consensus 59 qLrE~~et~~KE~~~~eKe~kE~~~K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~ 138 (370)
T PF02994_consen 59 QLREQDETPEKELKNKEKELKENIIKNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENI 138 (370)
T ss_dssp -----------------------------------------------------------H--------------------
T ss_pred HHHHhhhhhhhhhhhhhhhhhHhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 003711 299 -STYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEV 347 (801)
Q Consensus 299 -~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~~e~~~l~~el 347 (801)
..+...+.+++..+..+...+..+...+..+...+..+...+.+++...
T Consensus 139 ~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 139 DESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
No 398
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=77.69 E-value=1.3 Score=46.99 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCceEEEeeccCCcccceee
Q 003711 504 VEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 504 ~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
..+..++..++.+. ..|+..|+||||||++|
T Consensus 147 ~~~~~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 147 KKIKEFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHHHHHcC-CcEEEECCCCCCHHHHH
No 399
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=77.57 E-value=0.8 Score=41.08 Aligned_cols=15 Identities=40% Similarity=0.569 Sum_probs=0.0
Q ss_pred EEeeccCCcccceee
Q 003711 521 IFAYGQTGSGKTYTM 535 (801)
Q Consensus 521 v~~yG~tgsGKt~tl 535 (801)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
No 400
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=77.19 E-value=1.4 Score=46.82 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCceEEEeeccCCcccceee
Q 003711 504 VEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 504 ~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
..+..++..++. ....|+..|+||||||++|
T Consensus 149 ~~~~~~l~~~v~-~~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 149 GDLEAFLHACVV-GRLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHHHHHH-cCCeEEEECCCCccHHHHH
No 401
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=77.16 E-value=0.95 Score=46.78 Aligned_cols=30 Identities=33% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCC---ceEEEeeccCCcccceee
Q 003711 506 ISQLVQSALDGY---KVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 506 ~~~~v~~~~~G~---n~~v~~yG~tgsGKt~tl 535 (801)
+.+.+..++... .+.|+..|+||||||++|
T Consensus 112 ~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 112 IPEEIAEFLRSAVRGRGNILISGPTGSGKTTLL 144 (270)
T ss_dssp CHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHH
T ss_pred hHHHHHHHHhhccccceEEEEECCCccccchHH
No 402
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=77.14 E-value=1.5 Score=45.62 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCceEEEeeccCCcccceee
Q 003711 504 VEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 504 ~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
..+..++-.++.+. +.|+-.|.||||||+++
T Consensus 160 ~~~a~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 160 RRAAKFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHHHHHhhc-eeEEEeCCCCCCHHHHH
No 403
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=77.07 E-value=56 Score=33.00 Aligned_cols=90 Identities=20% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 003711 291 YISLQEQLSTYKASQDEAMRQKDALVHEVASMRVE--------------------------------------------- 325 (801)
Q Consensus 291 ~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~e--------------------------------------------- 325 (801)
++.++.++..+..++.+..+-+..|+.++..+...
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 326 LQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEE 383 (801)
Q Consensus 326 l~~l~~~~~~l~~e~~~l~~el~~l~~l~~~l~~le~~~~~l~~~~~~l~~~l~~l~~ 383 (801)
+.-+..+++.......+|++++..... .+..++.+++.++...-+|-+++.-++.
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~---~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQ---TISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 404
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=76.88 E-value=0.78 Score=50.47 Aligned_cols=127 Identities=20% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 003711 130 QELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSL-AREKETRL 208 (801)
Q Consensus 130 ~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~-~~~~~~~~ 208 (801)
....+.|++||..|++.|.....++++.+.++..+-+....-+.+.+..+++-+++|.....+++.....+ ..+..--+
T Consensus 368 ~~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEe 447 (495)
T PF12004_consen 368 MKEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEE 447 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 209 NMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYN 256 (801)
Q Consensus 209 ~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~ 256 (801)
++..+..++..-++.-+.-|+...++|..|.....+|-..+..+++..
T Consensus 448 ELrre~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~sal~~lk~ry 495 (495)
T PF12004_consen 448 ELRREHAEMQAVLDHKQRIIDAQEKRIAALDAANSRLMSALTQLKERY 495 (495)
T ss_dssp ------------------------------------------------
T ss_pred hhhhhHHHHhcccccchHHHHHhhhhccccccccccccccccccccCC
No 405
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=76.63 E-value=4.3 Score=45.76 Aligned_cols=69 Identities=22% Similarity=0.417 Sum_probs=0.0
Q ss_pred eceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccc---------------eeecc----CCCCCCCCCch-
Q 003711 489 FDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKT---------------YTMMG----KPGHPDLKGLI- 548 (801)
Q Consensus 489 fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt---------------~tl~G----~~~~~~~~Gii- 548 (801)
|+.+|+-+..-..|.+-+...+... ....-.++..||+|+||| |++-| +|-..+-.|+|
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl-~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~~sP~~e~PL~L~p 153 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGL-EEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGERSPVNESPLGLFD 153 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhc-CCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCCCCCCCCCCCCCCC
Q ss_pred HHHHHHHHHH
Q 003711 549 PRSLEQIFQT 558 (801)
Q Consensus 549 ~r~~~~lf~~ 558 (801)
|.-...+|+.
T Consensus 154 ~~~~~~~le~ 163 (644)
T PRK15455 154 PDEDGPILEE 163 (644)
T ss_pred hhhhHHHHHH
No 406
>PRK04406 hypothetical protein; Provisional
Probab=76.56 E-value=25 Score=28.06 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003711 361 EARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDA 416 (801)
Q Consensus 361 e~~~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 416 (801)
+..+..++.++..|+..+.....-++.++..+.....++..+..++..+..++.++
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 407
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=76.47 E-value=1.6e+02 Score=34.36 Aligned_cols=370 Identities=11% Similarity=0.058 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccCCCCcccchhhhhcccccccccccccccccccccccCcccCCCCCCCCCCCCC
Q 003711 1 MASNNQNKPPVLSNNITKASPSSNKKKLGVDEVTCDKEQKFGAEKMVGTANNARIRQAFSVVNGIQDLGLSSNPASNAGS 80 (801)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (801)
+++..+++++.++..|||+||-+.+.++++..+.. -+..||.+++++..|++.++.+++.+|.-|+.+..+.-+-.+
T Consensus 529 ~PP~~pp~gG~g~pppPppPPlpggag~PPPPppl---Pg~aG~PPpPppppg~~gppPPPpp~g~~Gg~ppPP~~gm~p 605 (1102)
T KOG1924|consen 529 PPPPLPPTGGTGPPPPPPPPPLPGGAGPPPPPPPL---PGIAGGPPPPPPPPGGGGPPPPPPPGGFLGGPPPPPPPGMFP 605 (1102)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCC---CcccCCCCccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCccc
Q ss_pred CCc---------------------------------------chhccHHHHHHHHhHHHhhcchhhhHHHHHHHHHHHHH
Q 003711 81 ECG---------------------------------------TIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKR 121 (801)
Q Consensus 81 ~~~---------------------------------------~~~~~~~e~~~l~~e~~~~~~~~~~~~~ie~l~~~i~~ 121 (801)
-+. +-+---+..+-+..-..++......+..-+.....-.-
T Consensus 606 maPvlP~gLkpKK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~ 685 (1102)
T KOG1924|consen 606 MAPVLPFGLKPKKVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKTG 685 (1102)
T ss_pred ccccCCCCCCccccCCCCCccccCCccccCccccCccceeeecchhhccchHHHHHHHHHhhccccccccccccccccch
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------HHHHHHHHHHHHH--H
Q 003711 122 LRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRN----------------------KEEELNLIIVELR--K 177 (801)
Q Consensus 122 l~~~~~~l~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~l~~----------------------ei~~l~~~l~~l~--~ 177 (801)
.+.+..+++-......+.+.-+...+.---.++...--+..+ .+.+++++++.+- +
T Consensus 686 ~kKk~kel~ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~E 765 (1102)
T KOG1924|consen 686 TKKKVKELRILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPE 765 (1102)
T ss_pred hhhhhhhheecchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Q 003711 178 SFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQ---------------------------- 229 (801)
Q Consensus 178 ~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~---------------------------- 229 (801)
+....-.++..+.-.+..+.-++ ...+.+..+.-.+.......++++....
T Consensus 766 QF~vvm~~vkrL~pRL~~ilFKl-~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~ 844 (1102)
T KOG1924|consen 766 QFVVVMSQVKRLRPRLSAILFKL-TFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFN 844 (1102)
T ss_pred HHhHHHhhccccChhHHHHHHHh-hHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccc
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 003711 230 -----------SANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQY------- 291 (801)
Q Consensus 230 -----------~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~------- 291 (801)
...++..-|---.+..++..-..-.-..+++.=.+.-.-....+++.+..+...+..++..+
T Consensus 845 is~L~kL~dTKsaDqk~TLLHfLae~~e~kypd~l~F~ddl~hv~kaSrvnad~ikK~~~~m~~~ik~Le~dlk~~~~~~ 924 (1102)
T KOG1924|consen 845 ISFLCKLRDTKSADQKTTLLHFLAEICEEKYPDILKFPDDLEHVEKASRVNADEIKKNLQQMENQIKKLERDLKNFKIAG 924 (1102)
T ss_pred hHHHHhhccccccchhhHHHHHHHHHHHHhChhhhcchhhHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003711 292 --------------ISLQEQLSTYKASQDEAMRQKDALVH---------EVASMRVELQQVRDDRDHQLSQVQALTAEVI 348 (801)
Q Consensus 292 --------------~~l~~~l~~~~~~~~~~~~~~~~l~~---------e~~~l~~el~~l~~~~~~l~~e~~~l~~el~ 348 (801)
+..+++...+..-....++-.+.+-+ .+++.=.++...+.....+..+.....++.+
T Consensus 925 ~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kkysmEEFFaDi~tFrnaf~ea~~en~krRee~E 1004 (1102)
T KOG1924|consen 925 NEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKYSMEEFFADIRTFRNAFLEAVAENEKRREEEE 1004 (1102)
T ss_pred cchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 349 KHKELAVSSEDLEARCASQSNQIRSL 374 (801)
Q Consensus 349 ~l~~l~~~l~~le~~~~~l~~~~~~l 374 (801)
..+.++...++.+++..+.+.+...+
T Consensus 1005 k~rr~k~a~eqseqEr~erQqrk~al 1030 (1102)
T KOG1924|consen 1005 KERRAKLAKEQSEQERLERQQRKKAL 1030 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH
No 408
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=76.29 E-value=47 Score=35.43 Aligned_cols=102 Identities=13% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 109 KERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAK 188 (801)
Q Consensus 109 ~~~ie~l~~~i~~l~~~~~~l~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l~~ 188 (801)
+.+++++...+..|....--|-.+.+-+.++++.++.+|+.+.........+++.+....-....-|...+..|+..+..
T Consensus 478 ~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d 557 (583)
T KOG3809|consen 478 REKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEIND 557 (583)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003711 189 EESDKLAALDSLAREKETRLNM 210 (801)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~l 210 (801)
....+......+-.....+..+
T Consensus 558 ~~e~i~~~r~~IL~Ne~rIqk~ 579 (583)
T KOG3809|consen 558 TKEEISKARGRILNNEKRIQKF 579 (583)
T ss_pred HHHHHHHHHHHHhhhHHHHHHH
No 409
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=76.26 E-value=75 Score=30.50 Aligned_cols=117 Identities=12% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 208 LNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTL 287 (801)
Q Consensus 208 ~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l 287 (801)
...+.-+...+.-++.|+.++.+.+.-+.+....+...+...............++..+...+...+..+.....-....
T Consensus 56 ~aAeAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~A 135 (188)
T PF05335_consen 56 KAAEAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGA 135 (188)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 288 RGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRV 324 (801)
Q Consensus 288 ~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~ 324 (801)
..++.+-..-+...+.+...+...+.....+++..+.
T Consensus 136 Q~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 136 QQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 410
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=76.17 E-value=24 Score=38.79 Aligned_cols=70 Identities=13% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 172 IVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDM 241 (801)
Q Consensus 172 l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~ 241 (801)
+.++..-+.....++.+++.+..++..++++....+++++..+...+.++..++..+++.+.+++++.+.
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
No 411
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=75.96 E-value=63 Score=29.50 Aligned_cols=96 Identities=13% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH------------------------------------
Q 003711 309 MRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE------------------------------------ 352 (801)
Q Consensus 309 ~~~~~~l~~e~~~l~~el~~l~~~~~~l~~e~~~l~~el~~l~~------------------------------------ 352 (801)
..+++++..+++.++.+++.++.++..+...+.+++.-++.++.
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHH
Q 003711 353 -------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKK 404 (801)
Q Consensus 353 -------l~~~l~~le~~~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 404 (801)
....++-+..+++.+...+..++..+..+...+..+......+..+......
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~~~ 143 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAAQK 143 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 412
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=75.80 E-value=3.5 Score=40.54 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=0.0
Q ss_pred cCCCCChhhHHHHHHHHHHHhhc--CCceEEEeeccCCcccce
Q 003711 493 FMPDESQEDVFVEISQLVQSALD--GYKVCIFAYGQTGSGKTY 533 (801)
Q Consensus 493 ~~~~~~~~~~~~~~~~~v~~~~~--G~n~~v~~yG~tgsGKt~ 533 (801)
|++=..|+.+-.....+++.+.. ..=..++-|||.|+|||+
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTT 65 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTT 65 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhH
No 413
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=75.40 E-value=2 Score=45.25 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhhcCCceE--EEeeccCCcccceee
Q 003711 499 QEDVFVEISQLVQSALDGYKVC--IFAYGQTGSGKTYTM 535 (801)
Q Consensus 499 ~~~~~~~~~~~v~~~~~G~n~~--v~~yG~tgsGKt~tl 535 (801)
|.++.+.+..++.....+.... ++-||++|+|||+..
T Consensus 9 ~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 9 QEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
No 414
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=75.39 E-value=1.9 Score=42.08 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCceEEEeeccCCcccce
Q 003711 507 SQLVQSALDGYKVCIFAYGQTGSGKTY 533 (801)
Q Consensus 507 ~~~v~~~~~G~n~~v~~yG~tgsGKt~ 533 (801)
..+++.++ .+-.|++.|+.|||||+
T Consensus 10 ~~~~~al~--~~~~v~~~G~AGTGKT~ 34 (205)
T PF02562_consen 10 KFALDALL--NNDLVIVNGPAGTGKTF 34 (205)
T ss_dssp HHHHHHHH--H-SEEEEE--TTSSTTH
T ss_pred HHHHHHHH--hCCeEEEECCCCCcHHH
No 415
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=75.35 E-value=1.1e+02 Score=31.90 Aligned_cols=260 Identities=16% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH
Q 003711 164 KEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDL-------------GKAQEELQS 230 (801)
Q Consensus 164 ei~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el-------------~~l~~~l~~ 230 (801)
.+.+--.++... ..+..+...+..+..-.......+......+..-..+-..+.... ..+..++..
T Consensus 10 ~l~~~~~~v~~~-~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~ 88 (296)
T PF13949_consen 10 SLLEKSEEVRSE-GGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQK 88 (296)
T ss_dssp HHHHHHHHHHHT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 231 ANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGE-----------KEKSAIVENLSTLRGQYISLQEQLS 299 (801)
Q Consensus 231 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~-----------~e~~~l~~~l~~l~~~~~~l~~~l~ 299 (801)
+...+.....--..+...+......+.-|..-...+...+-... ..+..+..++..+..+-..+-.++.
T Consensus 89 ~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk 168 (296)
T PF13949_consen 89 YREYLEQASESDSQLRSKLESIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEELKKEREELLEQLK 168 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 300 TYKASQDEAMRQKDALVHE-VASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQL 378 (801)
Q Consensus 300 ~~~~~~~~~~~~~~~l~~e-~~~l~~el~~l~~~~~~l~~e~~~l~~el~~l~~l~~~l~~le~~~~~l~~~~~~l~~~l 378 (801)
. ......+..-+..+... ....+.-..+.-.........+......-..+-. .+................. ...
T Consensus 169 ~-~~~~d~i~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~---~i~~~~~~~~~~~~~~~~~-~~r 243 (296)
T PF13949_consen 169 E-KLQNDDISKLLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQ---EIQEANEEFAQSRKSDQEQ-KER 243 (296)
T ss_dssp H------HHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHTTS--SHHH-HHH
T ss_pred H-HHhhccHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcccHHH-HHH
Q ss_pred HHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003711 379 AAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKR 429 (801)
Q Consensus 379 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~e~~~~~ 429 (801)
+..-..+......+.++...+.+-..=+.++...+..+...+...-..|+.
T Consensus 244 ~~~~~~l~~a~~~y~el~~~l~eG~~FY~~L~~~~~~l~~~~~~f~~~R~~ 294 (296)
T PF13949_consen 244 ESALQRLEAAYDAYKELSSNLEEGLKFYNDLLEILNKLQQKVEDFCNARRE 294 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 416
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=75.31 E-value=2.4 Score=43.23 Aligned_cols=42 Identities=29% Similarity=0.334 Sum_probs=0.0
Q ss_pred cCCCCChhhHHHH--HHHHHHHhhcCCceEEEeeccCCccccee
Q 003711 493 FMPDESQEDVFVE--ISQLVQSALDGYKVCIFAYGQTGSGKTYT 534 (801)
Q Consensus 493 ~~~~~~~~~~~~~--~~~~v~~~~~G~n~~v~~yG~tgsGKt~t 534 (801)
|-|-.-.+.++.+ |..|...+..+----.+-|||.|+|||.|
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSt 73 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTST 73 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHH
No 417
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=75.03 E-value=1.8e+02 Score=34.29 Aligned_cols=202 Identities=11% Similarity=0.025 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccCCCCcccc--hhhhhcccccccc-------cccccccccccccccCcccCCCC
Q 003711 1 MASNNQNKPPVLSNNITKASPSSNKKKLGVDEVTC--DKEQKFGAEKMVG-------TANNARIRQAFSVVNGIQDLGLS 71 (801)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~ 71 (801)
++.+.+.+.+...++|.|.+++.....++..+..+ .++++.++|...| .+.+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~----------------- 340 (656)
T PRK06975 278 APSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRGSAALWFVVVVLACAAAVG----------------- 340 (656)
T ss_pred CCCCCCCCCcccCCCCCCCCCCcCCCCCCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHH-----------------
Q ss_pred CCCCCCCCCCCcchhccHHHHHHHHhHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 003711 72 SNPASNAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSE 151 (801)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~e~~~l~~e~~~~~~~~~~~~~ie~l~~~i~~l~~~~~~l~~~~~~~~~e~~~l~~~l~~~~ 151 (801)
.-+....+..+..+ +..+..+......+.+...+.......+....+..++.++.+..
T Consensus 341 -------------~~~~~q~~~~~~~~---------l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~ 398 (656)
T PRK06975 341 -------------GYALNRKVDRLDQE---------LVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQ 398 (656)
T ss_pred -------------HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 003711 152 QKCAEMELALRNKEEELNLIIVELR----KSFASLQEKLAKEESDKLAALDSLAREKETRLNME-----RSHASLSEDLG 222 (801)
Q Consensus 152 ~~~~~l~~~l~~ei~~l~~~l~~l~----~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~-----~~~~~l~~el~ 222 (801)
.+...++.. +..+....++.. +.+-.+-.+--.+.........-++.....+..+. .-...+..++.
T Consensus 399 ~~~~~L~~~----~~~l~~~r~dW~laEae~Ll~lA~q~L~l~~dv~~A~~~L~~AD~~La~~~~P~l~~lR~Ala~Di~ 474 (656)
T PRK06975 399 SAQQALEQQ----YQDLSRNRDDWMIAEVEQMLSSASQQLQLTGNVQLALIALQNADARLATSDSPQAVAVRKAIAQDIE 474 (656)
T ss_pred HHHHHHHHH----HHHHhcChhhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHH
Q 003711 223 KAQE----ELQSANQRIASINDMYKLL 245 (801)
Q Consensus 223 ~l~~----~l~~~~~~l~~l~~~~~~l 245 (801)
.|+. ++..+-.++..+...++.|
T Consensus 475 ~L~~~~~~D~~gl~l~L~~l~~~vd~L 501 (656)
T PRK06975 475 RLKAAPSADLTGLAIKLDDAIAKIDAL 501 (656)
T ss_pred HHhcCCcCCHHHHHHHHHHHHHHHhhC
No 418
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=74.90 E-value=1.4e+02 Score=32.92 Aligned_cols=291 Identities=12% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------------HHH
Q 003711 112 CENMMDYIKRLRL-CIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRN------------------------KEE 166 (801)
Q Consensus 112 ie~l~~~i~~l~~-~~~~l~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~l~~------------------------ei~ 166 (801)
+.-+..++.-|.. -+..+.............+...+..+..++...-..++. .++
T Consensus 46 ~~~l~~Q~~~L~~~~~~~~~~~~~~~~~~f~~l~~~ld~~~~~L~~~l~~Lr~t~v~~~~~~~~~~~ktL~DFVd~~~v~ 125 (412)
T PF04108_consen 46 RRGLKQQLKLLYKKVRSSLLIVYEWGQRDFKDLVKELDPADARLEQTLDMLRNTKVPPFFRPPGEEPKTLYDFVDEDSVE 125 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCccccCCCCCCCcHHHhcCHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHH
Q 003711 167 ELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREK----------------------------ETRLNMERSHASLS 218 (801)
Q Consensus 167 ~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~~l~ 218 (801)
.++..++..-.++..++..+.............+...- .-...+-..+..++
T Consensus 126 ~L~~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~l~~le 205 (412)
T PF04108_consen 126 ILRENLKISIDELQAIQEQLDNSLLQFDNDLRKLKKQLINKRLKDYELLAPFQSSLGSSPSSSSSNPLMSTILKELHSLE 205 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccCCCCCcccccccHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 219 EDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQL 298 (801)
Q Consensus 219 ~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l 298 (801)
.++..+-..+..--.+........+.-...-...+.-+.-+..+..++..-+.+++..+..+........+-+......+
T Consensus 206 ~ema~lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~ 285 (412)
T PF04108_consen 206 QEMASLLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHI 285 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 299 STYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQL 378 (801)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~~e~~~l~~el~~l~~l~~~l~~le~~~~~l~~~~~~l~~~l 378 (801)
..+......+-..+......+...-................+.....++..+.. -+.....-...+-.++..-+.--
T Consensus 286 ~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~~~~i~~~~~~l~~L~~---~Y~~F~~aY~~LL~Ev~RRr~~~ 362 (412)
T PF04108_consen 286 RELYNALSEALEELRKFGERLPSYLAAFHDFEERWEEEKESIQAYIDELEQLCE---FYEGFLSAYDSLLLEVERRRAVR 362 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhHHhHHHHHHHHHHH
Q 003711 379 AAAEEKLEVSDLSALETKTEFEGQKKL 405 (801)
Q Consensus 379 ~~l~~~l~~~~~~~~~~~~~~~~~~~~ 405 (801)
+.+..-+..+..++..+..+=...++.
T Consensus 363 ~k~~~i~~~~~eeL~~l~eeE~~~Re~ 389 (412)
T PF04108_consen 363 DKMKKIIREANEELDKLREEEQRRREA 389 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 419
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=74.88 E-value=2.7 Score=43.60 Aligned_cols=39 Identities=28% Similarity=0.318 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHHHhhcCCce---------EEEeeccCCcccceee
Q 003711 497 ESQEDVFVEISQLVQSALDGYKV---------CIFAYGQTGSGKTYTM 535 (801)
Q Consensus 497 ~~~~~~~~~~~~~v~~~~~G~n~---------~v~~yG~tgsGKt~tl 535 (801)
.+...+...+...+...+..... .|+.+|++|+|||+|+
T Consensus 164 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 164 ADAEDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTL 211 (282)
T ss_pred CCHHHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHH
No 420
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=74.85 E-value=1.2 Score=45.29 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=0.0
Q ss_pred eEEEeeccCCcccceee
Q 003711 519 VCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 519 ~~v~~yG~tgsGKt~tl 535 (801)
+..+.||||||||++.+
T Consensus 88 ~I~~VYGPTG~GKSqLl 104 (369)
T PF02456_consen 88 FIGVVYGPTGSGKSQLL 104 (369)
T ss_pred eEEEEECCCCCCHHHHH
No 421
>PF13479 AAA_24: AAA domain
Probab=74.72 E-value=1.3 Score=43.79 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=0.0
Q ss_pred CceEEEeeccCCcccceee
Q 003711 517 YKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 517 ~n~~v~~yG~tgsGKt~tl 535 (801)
.+..++.||++|+|||++.
T Consensus 2 ~~~~~lIyG~~G~GKTt~a 20 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLA 20 (213)
T ss_pred CceEEEEECCCCCCHHHHH
No 422
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=74.43 E-value=1.1e+02 Score=31.34 Aligned_cols=216 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHH
Q 003711 109 KERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALR------NKEEELNLIIVELRKSFASL 182 (801)
Q Consensus 109 ~~~ie~l~~~i~~l~~~~~~l~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~l~------~ei~~l~~~l~~l~~~l~~l 182 (801)
...+-.+..++..|...-+.+...+-.++....+...-.-.+..++.++-..+- ..+-+++..-..++.+....
T Consensus 9 ~~~l~~I~~eLEkLN~sTDdIN~~E~~Le~ar~~Fretqv~~t~kl~el~Kk~~k~I~ksrpf~elk~~er~~r~e~QkA 88 (426)
T KOG2008|consen 9 EEVLPRIQGELEKLNQSTDDINRRETELEDARQKFRETQVEATVKLDELVKKIGKAIEKSRPFWELKRVERQARLEAQKA 88 (426)
T ss_pred hHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 183 QEKLAKEESDKLAALDSLAREKETRL--NMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQ 260 (801)
Q Consensus 183 ~~~l~~l~~~~~~~~~~~~~~~~~~~--~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~ 260 (801)
.++.+....-...+.+.+.-..+.+. .-..-......-+......+.+++......+.-...--..+-.+...+..++
T Consensus 89 a~~FeRat~vl~~AkeqVsl~~~sL~~~~~~~~~~~~~evlnh~~qrV~EaE~e~t~aE~~Has~a~~~l~l~~~~R~~e 168 (426)
T KOG2008|consen 89 AQDFERATEVLRAAKEQVSLAEQSLLEDDKRQFDSAWQEVLNHATQRVMEAEQEKTRAELVHASTAARYLALMGRMRQLE 168 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 261 KDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRV 324 (801)
Q Consensus 261 ~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~ 324 (801)
.+.....++-.-+=+....+...++....-+..|+.++...+..+......++.+..++.+-+.
T Consensus 169 k~n~~AIkKSrpYfE~k~~~t~~le~qk~tv~~Leaev~~~K~~Y~~slrnLE~ISd~IHeeRs 232 (426)
T KOG2008|consen 169 KKNKRAIKKSRPYFELKAKYTVQLEQQKKTVDDLEAEVTLAKGEYKMSLRNLEMISDEIHEERS 232 (426)
T ss_pred HHhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhh
No 423
>PRK04406 hypothetical protein; Provisional
Probab=74.36 E-value=33 Score=27.36 Aligned_cols=57 Identities=9% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003711 288 RGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALT 344 (801)
Q Consensus 288 ~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~~e~~~l~ 344 (801)
++-+..++..+.+++..++-.+..++.|+..+...+.++..+..++..+..++..+.
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 424
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=74.23 E-value=3 Score=45.19 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=0.0
Q ss_pred cCCCCChhhHHHHHHHHHHHhh--------cCCceEEEeeccCCcccceee
Q 003711 493 FMPDESQEDVFVEISQLVQSAL--------DGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 493 ~~~~~~~~~~~~~~~~~v~~~~--------~G~n~~v~~yG~tgsGKt~tl 535 (801)
.+.......++..+...+...+ ......|+.+|+||+|||+|+
T Consensus 141 ~~~~~~~~~v~~~l~~~l~~~i~~~~~~~~~~~~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 141 LSDLDDYDKVRDSVIIYIAKTIKCSGSIIDNLKKRVFILVGPTGVGKTTTI 191 (388)
T ss_pred hhhcCCHHHHHHHHHHHHHHHhhccCccccCCCCeEEEEECCCCCCHHHHH
No 425
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=74.20 E-value=1.3 Score=33.84 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=0.0
Q ss_pred EEEeeccCCcccceee
Q 003711 520 CIFAYGQTGSGKTYTM 535 (801)
Q Consensus 520 ~v~~yG~tgsGKt~tl 535 (801)
..+-+|++|||||+.|
T Consensus 25 ~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLL 40 (62)
T ss_pred EEEEECCCCCCHHHHH
No 426
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=74.10 E-value=6.9 Score=41.25 Aligned_cols=66 Identities=27% Similarity=0.544 Sum_probs=0.0
Q ss_pred ec-eecCCCCChhhHHHHHHHHHHHhhcCCce---EEEeeccCCcccc---------------eeeccCCCCCCCCCchH
Q 003711 489 FD-RVFMPDESQEDVFVEISQLVQSALDGYKV---CIFAYGQTGSGKT---------------YTMMGKPGHPDLKGLIP 549 (801)
Q Consensus 489 fd-~v~~~~~~~~~~~~~~~~~v~~~~~G~n~---~v~~yG~tgsGKt---------------~tl~G~~~~~~~~Gii~ 549 (801)
|+ .+|+ .++.-+.+-..+.++-.|... .++..||.|+||| |++.|+|-+..--++||
T Consensus 59 f~~~~~G----~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P 134 (358)
T PF08298_consen 59 FEDEFYG----MEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFP 134 (358)
T ss_pred ccccccC----cHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCC
Q ss_pred HHHHHHHHH
Q 003711 550 RSLEQIFQT 558 (801)
Q Consensus 550 r~~~~lf~~ 558 (801)
.-+++.|..
T Consensus 135 ~~~r~~~~~ 143 (358)
T PF08298_consen 135 KELRREFED 143 (358)
T ss_pred HhHHHHHHH
No 427
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=74.07 E-value=1.1e+02 Score=33.96 Aligned_cols=125 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 189 EESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHE 268 (801)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~ 268 (801)
+..+...+..+..++.+....+.--.+.|-.++++|..+..-+..++...+....++++.+.++++++..++.++.....
T Consensus 299 MGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~ 378 (832)
T KOG2077|consen 299 MGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQ 378 (832)
T ss_pred chHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 269 SIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKD 313 (801)
Q Consensus 269 ~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~ 313 (801)
+...-+..---+.....=-+.++...-.+-...+..+-++++.+.
T Consensus 379 ~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 379 KAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVR 423 (832)
T ss_pred hhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh
No 428
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=73.98 E-value=1.3e+02 Score=31.98 Aligned_cols=143 Identities=11% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 003711 168 LNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKL--- 244 (801)
Q Consensus 168 l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~--- 244 (801)
....+...+..+..++.++..+.................+..+..++..++..+..++..+..++..++..+.-.+.
T Consensus 53 ~~~~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~i 132 (327)
T TIGR02971 53 RTAELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAV 132 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 245 LQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRG-----QYISLQEQLSTYKASQDEAMRQKD 313 (801)
Q Consensus 245 l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~-----~~~~l~~~l~~~~~~~~~~~~~~~ 313 (801)
-+.++...+..+..++.++..+...+. ..+......+..+.. ++...+.++...+..+......+.
T Consensus 133 S~~~~d~~~~~~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 133 SASDLDSKALKLRTAEEELEEALASRS---EQIDGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
No 429
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=73.95 E-value=1.3e+02 Score=32.30 Aligned_cols=316 Identities=16% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 003711 129 FQELEGDYAFEHER-LRNALELSEQKCAEMELALR-----NKEEELNLIIV--------ELRKSFASLQEKLAKEESDKL 194 (801)
Q Consensus 129 l~~~~~~~~~e~~~-l~~~l~~~~~~~~~l~~~l~-----~ei~~l~~~l~--------~l~~~l~~l~~~l~~l~~~~~ 194 (801)
+.....-|.++..+ ++.++..++..-.++..-+. ..+..++.-+. ....-+..+...+..+.....
T Consensus 4 V~ea~S~YsE~ka~lvr~e~~~~e~a~~~~~~~L~~lnLP~sL~~l~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~l~~ 83 (356)
T cd09237 4 VHEKESLYSEEKAKLLRAEVERVEVANEEYASFLEYLNLPKLLVDLKERFEGENELMEIVSGLKSSSVDSQLELLRPQSA 83 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHhhhcCCchhHHHHHHhccCCCcchhHHHhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 195 AALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGE 274 (801)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~ 274 (801)
.....+......+..-..+...++.++.. .=.......--..+...+..++..+......-..+...+......+.-+.
T Consensus 84 ~~~~~l~~~~~~L~~E~~ed~~~R~k~g~-~Wtr~~S~~~~~~l~~~~~k~~~~L~~A~~SD~~l~~~~~~~~~~l~lL~ 162 (356)
T cd09237 84 SWVNEIDSSYNDLDEEMKEIEKMRKKILA-KWTQSPSSSLTASLREDLVKLKKSLVEASASDEKLFSLVDPVKEDIALLL 162 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHc
Q ss_pred HHHHHHHHHH------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003711 275 KEKSAIVENL------------------S---TLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDR 333 (801)
Q Consensus 275 ~e~~~l~~~l------------------~---~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~ 333 (801)
.-...+..-+ . .....+..++.-+.++..-..+-..-++.++.....-.-.-.=+....
T Consensus 163 ~~~~~l~~~~~~p~~~~~~~slld~d~~~~~~~~~~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~k~~~DDI~~~ll~~~~ 242 (356)
T cd09237 163 NGGSLWEELFGFSSSGSPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIKEERQRVLKDLKQKIHNDDISDILILNSK 242 (356)
T ss_pred CChHHHHHHhcCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHhHHHHHHHHHHHHHHHHH
Q 003711 334 DHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAA--EEKLEVSDLSALETKTEFEGQKKLINELRN 411 (801)
Q Consensus 334 ~~l~~e~~~l~~el~~l~~l~~~l~~le~~~~~l~~~~~~l~~~l~~l--~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 411 (801)
..-...-.-...++..+.. -...+...+.....-+..++.....+ ................+.+..-+.+...-.
T Consensus 243 ~~~~~~e~lF~~eL~kf~p---~~~~l~~~~~~Q~~ll~el~~~~~~f~~~~~~~~~~~~~~~~~~~R~~~l~~l~~ay~ 319 (356)
T cd09237 243 SKSEIEKQLFPEELEKFKP---LQNRLEATIFKQSSLINELKIELDKLFKLPGVKEKQSKEKSKQKLRKEFFEKLKKAYN 319 (356)
T ss_pred cccchHHHHHHHHHHHcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccCceeEEeeeC
Q 003711 412 HLEDAEYKLIEGEKLRKRLHNTILELKGNIRVFCRVR 448 (801)
Q Consensus 412 ~l~~l~~~l~~~e~~~~~l~~~l~~l~~~i~~~~r~~ 448 (801)
...++...+.+...=...|...+..++.++..|+.-|
T Consensus 320 ~y~el~~~l~~G~~FY~dL~~~~~~l~~~~~~fv~~R 356 (356)
T cd09237 320 SFKKFSAGLPKGLEFYDDLLKMAKDLAKNVQAFVNQR 356 (356)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 430
>PRK09183 transposase/IS protein; Provisional
Probab=73.88 E-value=1.8 Score=44.35 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=0.0
Q ss_pred eceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceee
Q 003711 489 FDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 489 fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
||.=|.+..+. ..+..+-...+-...-.|+.+|++|+||||.+
T Consensus 77 fd~~~~~~~~~----~~i~~L~~~~~i~~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 77 YDFTFATGAPQ----KQLQSLRSLSFIERNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred cccccCCCCCH----HHHHHHhcCCchhcCCeEEEEeCCCCCHHHHH
No 431
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=73.55 E-value=14 Score=44.72 Aligned_cols=205 Identities=16% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 003711 317 HEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCA---SQSNQIRSLSDQLAAAEEKLEVSDLSAL 393 (801)
Q Consensus 317 ~e~~~l~~el~~l~~~~~~l~~e~~~l~~el~~l~~l~~~l~~le~~~~---~l~~~~~~l~~~l~~l~~~l~~~~~~~~ 393 (801)
+-++-+..-....+-........+..+..++..++. ++..+..+.. ........++.++..+.+++..+.....
T Consensus 398 KAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (852)
T TIGR03345 398 KAVSLLDTACARVALSQNATPAALEDLRRRIAALEL---ELDALEREAALGADHDERLAELRAELAALEAELAALEARWQ 474 (852)
T ss_pred HHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHH---HHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCceeEEeeeCCCCCCCCCCCCCceEEcCCCccccc
Q 003711 394 ETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELKGNIRVFCRVRPLLPDDSSGSEGKLISYPTTTEALG 473 (801)
Q Consensus 394 ~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~e~~~~~l~~~l~~l~~~i~~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~ 473 (801)
.-..-.......-.+.......-+............+...+..+.+. .++...+..... |...-..-.+-
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~---i~~vv~~~tgi 544 (852)
T TIGR03345 475 QEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGE-------EPLVFPEVDAQA---VAEVVADWTGI 544 (852)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhc-------cccccceecHHH---HHHHHHHHHCC
Q ss_pred cceeeecCCceeEEEeceecCCC-CChhhHHHHHHHHHHHhhcCCc------eEEEeeccCCccccee
Q 003711 474 RGIDIMQNGQKHSFSFDRVFMPD-ESQEDVFVEISQLVQSALDGYK------VCIFAYGQTGSGKTYT 534 (801)
Q Consensus 474 ~~i~~~~~~~~~~f~fd~v~~~~-~~~~~~~~~~~~~v~~~~~G~n------~~v~~yG~tgsGKt~t 534 (801)
.-..+.......--.+...+... ..|...-..|...|..+..|.+ ++++-+||+|+|||++
T Consensus 545 p~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~l 612 (852)
T TIGR03345 545 PVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTET 612 (852)
T ss_pred CchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHH
No 432
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=73.49 E-value=1.4e+02 Score=35.89 Aligned_cols=112 Identities=16% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 003711 238 INDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQD-EAMRQKDALV 316 (801)
Q Consensus 238 l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~-~~~~~~~~l~ 316 (801)
++...+.+.+...+++.-+..++.+...++.....++..+.++......++.+.+.++.+......+.. +..+.++..+
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~ 583 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAK 583 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH---------HHHhHHHHHHHHHHHHHHHHH
Q 003711 317 HEVASMRVELQQ---------VRDDRDHQLSQVQALTAEVIK 349 (801)
Q Consensus 317 ~e~~~l~~el~~---------l~~~~~~l~~e~~~l~~el~~ 349 (801)
.+.+.+-.++.+ ...........+..+...+..
T Consensus 584 ~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 625 (782)
T PRK00409 584 KEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEK 625 (782)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhhhhhh
No 433
>PRK02119 hypothetical protein; Provisional
Probab=73.45 E-value=29 Score=27.55 Aligned_cols=56 Identities=4% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003711 289 GQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALT 344 (801)
Q Consensus 289 ~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~~e~~~l~ 344 (801)
.++..++..+.+++..+.-.+..++.++..+...+.++..+..++..+..++..+.
T Consensus 2 ~~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 434
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=73.37 E-value=38 Score=25.74 Aligned_cols=61 Identities=13% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 230 SANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQ 290 (801)
Q Consensus 230 ~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~ 290 (801)
.++..++.--.....+.+++...+...-..+..+.+.......+..++..+..+++.++.+
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 435
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=73.27 E-value=38 Score=25.72 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 195 AALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHY 255 (801)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~ 255 (801)
+++..++........+..++.......-..+..+.+...+..++..++..++..+..++..
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 436
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=73.26 E-value=20 Score=30.43 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 003711 355 VSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTI 434 (801)
Q Consensus 355 ~~l~~le~~~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~e~~~~~l~~~l 434 (801)
..+..-......++.....++.+++.|...|.. ++..-+...+.....++.+...|+.++.+.+..+..++.++
T Consensus 1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFe------EAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL 74 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQIESELEELTASLFE------EANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQL 74 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSS
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hccc
Q 003711 435 LELK 438 (801)
Q Consensus 435 ~~l~ 438 (801)
..|+
T Consensus 75 ~~LK 78 (100)
T PF06428_consen 75 KELK 78 (100)
T ss_dssp SHHH
T ss_pred HHHH
No 437
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=73.19 E-value=1.5 Score=39.99 Aligned_cols=14 Identities=43% Similarity=0.631 Sum_probs=0.0
Q ss_pred EEEeeccCCcccce
Q 003711 520 CIFAYGQTGSGKTY 533 (801)
Q Consensus 520 ~v~~yG~tgsGKt~ 533 (801)
.|+.+|++|||||+
T Consensus 1 lii~~G~pgsGKSt 14 (143)
T PF13671_consen 1 LIILCGPPGSGKST 14 (143)
T ss_dssp EEEEEESTTSSHHH
T ss_pred CEEEECCCCCCHHH
No 438
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=73.01 E-value=1.4 Score=43.41 Aligned_cols=27 Identities=30% Similarity=0.575 Sum_probs=0.0
Q ss_pred EEeeccCCcccceee--ccCCCCCCCCCch
Q 003711 521 IFAYGQTGSGKTYTM--MGKPGHPDLKGLI 548 (801)
Q Consensus 521 v~~yG~tgsGKt~tl--~G~~~~~~~~Gii 548 (801)
|.-.||+|||||+.| .|.-..| ..|.|
T Consensus 34 vaI~GpSGSGKSTLLniig~ld~p-t~G~v 62 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLDKP-TSGEV 62 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcccCC-CCceE
No 439
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=73.00 E-value=2.1 Score=44.08 Aligned_cols=42 Identities=19% Similarity=0.379 Sum_probs=0.0
Q ss_pred cCCCCChhhHH----HHHH--HHHHHhhcCCceEEEeeccCCcccceee
Q 003711 493 FMPDESQEDVF----VEIS--QLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 493 ~~~~~~~~~~~----~~~~--~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
|+++.+-.++| +.+. -+++..+.. +--|+.+|++|||||.++
T Consensus 3 ~~~~~~~~~~~VpT~dt~r~~~ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 3 YDPEMPFNEILVPTVDTVRYSYLLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp ----------T---HHHHHHHHHHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred cccccccceEEeCcHHHHHHHHHHHHHHHc-CCcEEEECCCCCchhHHH
No 440
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=72.80 E-value=56 Score=28.10 Aligned_cols=94 Identities=15% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Q 003711 256 NTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVH---EVASMRVELQQVRDD 332 (801)
Q Consensus 256 ~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~---e~~~l~~el~~l~~~ 332 (801)
+.-+....+.+...+..-. .....-.++-.+..+...+..+++.++.+...+.+++..+.. ....+..+...+..+
T Consensus 4 ik~ir~n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~ 82 (108)
T PF02403_consen 4 IKLIRENPEEVRENLKKRG-GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEE 82 (108)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003711 333 RDHQLSQVQALTAEVIKH 350 (801)
Q Consensus 333 ~~~l~~e~~~l~~el~~l 350 (801)
+..++.++..++.++..+
T Consensus 83 i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 83 IKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
No 441
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=72.64 E-value=1.1 Score=38.79 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=0.0
Q ss_pred EEeeccCCcccceee
Q 003711 521 IFAYGQTGSGKTYTM 535 (801)
Q Consensus 521 v~~yG~tgsGKt~tl 535 (801)
|+.||++|+|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
No 442
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=72.42 E-value=59 Score=27.52 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRG 289 (801)
Q Consensus 216 ~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~ 289 (801)
.+-.+...++.+..-++..+-+-+.....+.+.+...+..+..++++++.+.=.-..|...+..+..++.....
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~ 75 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQ 75 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 443
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=72.36 E-value=1.3 Score=44.33 Aligned_cols=15 Identities=53% Similarity=0.842 Sum_probs=0.0
Q ss_pred EEeeccCCcccceee
Q 003711 521 IFAYGQTGSGKTYTM 535 (801)
Q Consensus 521 v~~yG~tgsGKt~tl 535 (801)
+..+|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
No 444
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=72.36 E-value=1.4e+02 Score=31.99 Aligned_cols=277 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---------
Q 003711 116 MDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKL--------- 186 (801)
Q Consensus 116 ~~~i~~l~~~~~~l~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l--------- 186 (801)
.+-...|...++.+..-..++..+++.+..++..+......++.. +..+..-+.-...-+.--+...
T Consensus 69 ~dtt~~L~~R~~di~~Wk~el~~ele~l~~E~~~L~~~k~rle~~----L~~~~~P~~ia~eCL~~RekR~~~dlv~D~V 144 (421)
T KOG2685|consen 69 RDTTEKLGQRLDDVNFWKGELDRELEDLAAEIDDLLHEKRRLERA----LNALALPLSIAEECLAHREKRQGIDLVHDEV 144 (421)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCcHHHHHHHHHHHhhcccchhhcccc
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------
Q 003711 187 -AKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQ------------------------------------ 229 (801)
Q Consensus 187 -~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~------------------------------------ 229 (801)
.++..+..-+..-...++..+.....++...+.-...+..++.
T Consensus 145 e~EL~kE~eli~~~q~ll~~~~~~a~~Ql~~nr~ar~~Le~Dl~dK~eA~~ID~~c~~L~~~S~~I~~~p~~~R~~~~~~ 224 (421)
T KOG2685|consen 145 ETELHKEVELIENIQELLKKTLERAEEQLRLNREARQNLERDLSDKQEAYEIDEKCLALNNNSPNISYKPDPTRVPPNSS 224 (421)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhheechhhhhhcCCCCCeeccCCCccCCCCCC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 230 SANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIK-RGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEA 308 (801)
Q Consensus 230 ~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~-~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~ 308 (801)
..+.-++--...+...+......-.-...+..-+......+. +...---.+...+.+.+.-...++-++...-.++.+.
T Consensus 225 s~e~W~~fs~~nl~~ae~er~~S~~LR~~l~~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~ 304 (421)
T KOG2685|consen 225 SPESWAKFSGDNLDRAERERAASAALREALDQTLRETANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADA 304 (421)
T ss_pred CHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 309 MRQKDALVHEVASMRVELQQVRDDRDH-----------------QLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQI 371 (801)
Q Consensus 309 ~~~~~~l~~e~~~l~~el~~l~~~~~~-----------------l~~e~~~l~~el~~l~~l~~~l~~le~~~~~l~~~~ 371 (801)
+..+..++..+.....-++-....++. +-.++..+..-+..++. ++.+.+..+..+....
T Consensus 305 e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~---kL~eA~~~l~~L~~~~ 381 (421)
T KOG2685|consen 305 ENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKE---KLDEAEDSLKLLVNHR 381 (421)
T ss_pred HhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHhHHHHH
Q 003711 372 RSLSDQLAAAEEKLEVSDLSALETKTEF 399 (801)
Q Consensus 372 ~~l~~~l~~l~~~l~~~~~~~~~~~~~~ 399 (801)
..|+.++......+--.......++..+
T Consensus 382 ~rLe~di~~k~nsL~ID~ekcm~mR~~y 409 (421)
T KOG2685|consen 382 ARLERDIAIKANSLFIDREKCMLMRKSY 409 (421)
T ss_pred HHHHHHHHHhhcchhccHHHHHHHHhcC
No 445
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=72.34 E-value=29 Score=26.82 Aligned_cols=65 Identities=22% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 359 DLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEG 423 (801)
Q Consensus 359 ~le~~~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~ 423 (801)
+++.++..+..++..++..+..+...+..-.-....-..-++..+..+.++..++..+...+..+
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 446
>PRK04195 replication factor C large subunit; Provisional
Probab=72.26 E-value=2.8 Score=47.37 Aligned_cols=37 Identities=30% Similarity=0.463 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhhcCC-ceEEEeeccCCcccceee
Q 003711 499 QEDVFVEISQLVQSALDGY-KVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 499 ~~~~~~~~~~~v~~~~~G~-n~~v~~yG~tgsGKt~tl 535 (801)
+..+-..+..++.....|. .-.++.|||+|+|||++.
T Consensus 19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
No 447
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=72.19 E-value=49 Score=28.48 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 218 SEDLGKAQEELQSANQRIASINDMYKLL--QEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVEN 283 (801)
Q Consensus 218 ~~el~~l~~~l~~~~~~l~~l~~~~~~l--~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~ 283 (801)
..++..+...+.....++..++..++.+ ..++..++..+.+++-++..+..+++.+.....-+.+.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 448
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=71.88 E-value=1.1e+02 Score=30.49 Aligned_cols=165 Identities=12% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 185 KLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDID 264 (801)
Q Consensus 185 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~ 264 (801)
++..+-..+-+-.....++-..+-+.-..+.++-..-.-....+...-++--.+-+.-..++..++.+..++......+.
T Consensus 50 q~~~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Ln 129 (338)
T KOG3647|consen 50 QYRSLIGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSSRAQLN 129 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003711 265 AAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALT 344 (801)
Q Consensus 265 ~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~~e~~~l~ 344 (801)
........|...++.-+.+++..++.++.|+.---..-.+....+++++.+-...-.-=..+.-++.+++.....-...+
T Consensus 130 nvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~rse~~rq 209 (338)
T KOG3647|consen 130 NVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRTRSEPIRQ 209 (338)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Q ss_pred HHHHH
Q 003711 345 AEVIK 349 (801)
Q Consensus 345 ~el~~ 349 (801)
++.+.
T Consensus 210 eeaen 214 (338)
T KOG3647|consen 210 EEAEN 214 (338)
T ss_pred HHHHh
No 449
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=71.77 E-value=51 Score=26.57 Aligned_cols=75 Identities=13% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 244 LLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVAS 321 (801)
Q Consensus 244 ~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~ 321 (801)
++.+-+..++.+...+..++.........++..+..-..++..++..+-.|+..-..++....+ ++..++.+++.
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEe---EI~rLr~eLe~ 75 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEE---EIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
No 450
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=71.75 E-value=1.7 Score=41.25 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=0.0
Q ss_pred eEEEeeccCCccccee
Q 003711 519 VCIFAYGQTGSGKTYT 534 (801)
Q Consensus 519 ~~v~~yG~tgsGKt~t 534 (801)
+.++.+||||+|||++
T Consensus 4 ~~~ll~GpsGvGKT~l 19 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTEL 19 (171)
T ss_dssp EEEEEESSTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
No 451
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=71.74 E-value=46 Score=28.66 Aligned_cols=69 Identities=13% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 254 HYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRG---QYISLQEQLSTYKASQDEAMRQKDALVHEVASM 322 (801)
Q Consensus 254 ~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~---~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l 322 (801)
.++-.+..+...+..++..++.+...+..++..+.. ..+.+..+...++.++..++.++..+..++..+
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 452
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=71.66 E-value=1.7e+02 Score=35.29 Aligned_cols=112 Identities=16% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 003711 224 AQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQY-ISLQEQLSTYK 302 (801)
Q Consensus 224 l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~-~~l~~~l~~~~ 302 (801)
+..-..-+...-..++..+..+.+....+++....++....+++.....++.+.+.+..+...+..+. ++.+..+.+.+
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~ 583 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAK 583 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhHHH
Q 003711 303 ASQDEAMRQKDA---------LVHEVASMRVELQQVRDDRDH 335 (801)
Q Consensus 303 ~~~~~~~~~~~~---------l~~e~~~l~~el~~l~~~~~~ 335 (801)
.+..++-.++++ ...........+..+...+..
T Consensus 584 ~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 625 (782)
T PRK00409 584 KEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEK 625 (782)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhhhhhh
No 453
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=71.34 E-value=1.2e+02 Score=30.67 Aligned_cols=232 Identities=14% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 141 ERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSED 220 (801)
Q Consensus 141 ~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~e 220 (801)
.+|..--+.+..-...++.+....-..-...+..+...+..++..+..-.....+....+.. ..+..+..+...
T Consensus 5 ~KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~------~~e~~i~~~~~~ 78 (247)
T PF06705_consen 5 SKLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQS------KFEEQINNMQER 78 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 003711 221 LGK-AQEELQSANQRIASINDMYKLLQEYNSSLQHYNTK-LQKDIDAAHESIKRGEKEKSAIVENLSTLRGQY-ISLQEQ 297 (801)
Q Consensus 221 l~~-l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~-l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~-~~l~~~ 297 (801)
+.. +......+...+..+...+..+...+......+.. ++.....+...+..+...++.-.......+..+ ..+...
T Consensus 79 v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~ 158 (247)
T PF06705_consen 79 VENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEE 158 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 298 LSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQA-LTAEVIKHKELAVSSEDLEARCASQSNQIRSLSD 376 (801)
Q Consensus 298 l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~~e~~~-l~~el~~l~~l~~~l~~le~~~~~l~~~~~~l~~ 376 (801)
...+...+.. +...-...+..+...++.+..........+.. +-.++..++. .|..+...-...-+.+-.
T Consensus 159 ~~~l~~~i~~---Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~------~l~~e~~~R~~~Dd~Iv~ 229 (247)
T PF06705_consen 159 ENRLQEKIEK---EKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKN------ALALESQEREQSDDDIVQ 229 (247)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhHHHH
Q ss_pred HHHHHHHHHHh
Q 003711 377 QLAAAEEKLEV 387 (801)
Q Consensus 377 ~l~~l~~~l~~ 387 (801)
.+..+...+..
T Consensus 230 aln~yt~~lQ~ 240 (247)
T PF06705_consen 230 ALNHYTKALQD 240 (247)
T ss_pred HHHHHHHHHHH
No 454
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=71.29 E-value=1.2e+02 Score=30.57 Aligned_cols=241 Identities=10% Similarity=0.059 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 107 NYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKL 186 (801)
Q Consensus 107 ~~~~~ie~l~~~i~~l~~~~~~l~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l 186 (801)
+...-..++......+......+.....+...........+..+.......... .....................+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~----~~~~~~~~~~~~~~~~~~~~~~ 76 (262)
T smart00283 1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEA----AEEGREAVEDAITAMDQIREVV 76 (262)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 187 AKEESDKLAALDSLAREKETRLNMERSHASLSED---------------------LGKAQEELQSANQRIASINDMYKLL 245 (801)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~e---------------------l~~l~~~l~~~~~~l~~l~~~~~~l 245 (801)
..+......+.............+.....+...- ...+..-.........+....+..+
T Consensus 77 ~~~~~~i~~i~~~~~~i~~~~~~i~~~a~~~~~la~na~ieA~~ag~~g~~~~~va~~I~~la~~t~~~~~ev~~~~~~~ 156 (262)
T smart00283 77 EEAVSAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLIKEI 156 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 246 QEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVE 325 (801)
Q Consensus 246 ~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~e 325 (801)
..........+......+......+......+......+..+...+..+............+.......+...+..+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~ 236 (262)
T smart00283 157 QEETNEAVAAMEESSSEVEEGVELVEETGEALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAM 236 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003711 326 LQQVRDDRDHQLSQVQALTAEVIKHK 351 (801)
Q Consensus 326 l~~l~~~~~~l~~e~~~l~~el~~l~ 351 (801)
..........+......|...+..++
T Consensus 237 ~~~~~~~~~~l~~~~~~l~~~~~~~~ 262 (262)
T smart00283 237 SEEISAAAEELSGLAEELKELVEQFK 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
No 455
>PF12846 AAA_10: AAA-like domain
Probab=71.14 E-value=1.5 Score=45.93 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=0.0
Q ss_pred ceEEEeeccCCcccceee
Q 003711 518 KVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 518 n~~v~~yG~tgsGKt~tl 535 (801)
|.-++.+|+||||||+++
T Consensus 1 n~h~~i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL 18 (304)
T ss_pred CCeEEEECCCCCcHHHHH
No 456
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=71.07 E-value=23 Score=33.84 Aligned_cols=98 Identities=12% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 220 DLGKAQEELQSANQRIASINDMYKL-LQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQL 298 (801)
Q Consensus 220 el~~l~~~l~~~~~~l~~l~~~~~~-l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l 298 (801)
+...|+.++..+..++...+..... -...-.....-..++++-++-.+.++..+..........+..++..++.++.++
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV 176 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQV 176 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003711 299 STYKASQDEAMRQKDALVH 317 (801)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~ 317 (801)
..++.-+..-+.++..|++
T Consensus 177 ~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 177 DGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHhcC
No 457
>PRK06547 hypothetical protein; Provisional
Probab=71.04 E-value=3.4 Score=39.24 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCceEEEeeccCCcccce
Q 003711 506 ISQLVQSALDGYKVCIFAYGQTGSGKTY 533 (801)
Q Consensus 506 ~~~~v~~~~~G~n~~v~~yG~tgsGKt~ 533 (801)
|+..+..+..+.---|+.+|++|||||+
T Consensus 3 ~~~~~~~~~~~~~~~i~i~G~~GsGKTt 30 (172)
T PRK06547 3 VALIAARLCGGGMITVLIDGRSGSGKTT 30 (172)
T ss_pred HHHHHHHhhcCCCEEEEEECCCCCCHHH
No 458
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=71.03 E-value=1.7e+02 Score=32.22 Aligned_cols=156 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 147 LELSEQKCAEMELALR-NKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQ 225 (801)
Q Consensus 147 l~~~~~~~~~l~~~l~-~ei~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~ 225 (801)
+...+..++++..... ..+.-.+.+++..+..+...+..+..+ .-...+-+-..+.+..-
T Consensus 225 L~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~f-------------------Rn~~gvlDP~~~a~~~~ 285 (434)
T PRK15178 225 LSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKI-------------------QHIQKDIDPKETITAIY 285 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHhCCCcChHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 003711 226 EELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIV--ENLSTLRGQYISLQEQLSTYKA 303 (801)
Q Consensus 226 ~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~--~~l~~l~~~~~~l~~~l~~~~~ 303 (801)
..+..++.++..++.++..+...+..-...+..++.++..++.++...+..+..-. ..+...-.+++.+.-+.+-.+.
T Consensus 286 ~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~ 365 (434)
T PRK15178 286 QLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKA 365 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003711 304 SQDEAMRQKDALVHEVAS 321 (801)
Q Consensus 304 ~~~~~~~~~~~l~~e~~~ 321 (801)
.+......++....+-..
T Consensus 366 ~y~sAlaaLE~AR~EA~R 383 (434)
T PRK15178 366 RWESALQTLQQGKLQALR 383 (434)
T ss_pred HHHHHHHHHHHHHHHHHh
No 459
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=71.02 E-value=1.1e+02 Score=29.97 Aligned_cols=181 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003711 260 QKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTY-KASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLS 338 (801)
Q Consensus 260 ~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~-~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~~ 338 (801)
...+-..-+.....+..+......+..++.....+=.++-.+ ......+......+...+..-+..+......+.....
T Consensus 17 ~e~~~~~le~a~~~Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~ 96 (204)
T PF10368_consen 17 EEQLYDQLEKAVKQEKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKE 96 (204)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003711 339 QVQALTAEVIKHKE--LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDA 416 (801)
Q Consensus 339 e~~~l~~el~~l~~--l~~~l~~le~~~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 416 (801)
++..+...+..+.. +..+...+...+...-.....+-.........=..++..+..-...+..+..++..+......+
T Consensus 97 e~~~~~~~i~ki~d~~~k~qa~~l~~~~~~ry~~~~~l~~~Y~~~l~~ekely~~L~~~d~~~~~l~~ki~~iN~~y~~~ 176 (204)
T PF10368_consen 97 EFKKAKKYIDKIEDEKLKKQAKELNEAMKKRYKSYDKLYKAYKKALELEKELYEMLKDKDTTQKQLDEKIKAINQSYKEV 176 (204)
T ss_dssp HHTT----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCc
Q 003711 417 EYKLIEGEKLRKRLHNTILELKGN 440 (801)
Q Consensus 417 ~~~l~~~e~~~~~l~~~l~~l~~~ 440 (801)
.................-.++...
T Consensus 177 ~~~~~~fn~~t~~yN~~K~~~y~~ 200 (204)
T PF10368_consen 177 NKQKEKFNEYTKKYNEEKQDFYKK 200 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
No 460
>PRK02119 hypothetical protein; Provisional
Probab=71.00 E-value=44 Score=26.50 Aligned_cols=54 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 276 EKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQV 329 (801)
Q Consensus 276 e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l 329 (801)
++..+...+.+|+.++...+.-++++...+....+++..+..++..+...+..+
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 461
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=70.91 E-value=4.5 Score=47.25 Aligned_cols=93 Identities=26% Similarity=0.330 Sum_probs=0.0
Q ss_pred EEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceeeccCCCCCCCCCch----HHHHHHHHHHHHhh
Q 003711 487 FSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPGHPDLKGLI----PRSLEQIFQTRQSL 562 (801)
Q Consensus 487 f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl~G~~~~~~~~Gii----~r~~~~lf~~~~~~ 562 (801)
|....-|.|.-.|..-|.. +++.+-.|....+ .+|.||||||++|-.--......-|| ......|+..+..+
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~~-l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQT-LLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcEE-EECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Q ss_pred hhcCCeeeEEEEEEEEEcccee
Q 003711 563 LSQGWKYEMQVSMLEIYNETIR 584 (801)
Q Consensus 563 ~~~~~~~~v~~S~~ei~~e~v~ 584 (801)
.+...+.++||||..|.-..|
T Consensus 78 -~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 78 -FPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred -CCCCeEEEEeeecccCCcccc
No 462
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=70.64 E-value=1e+02 Score=29.62 Aligned_cols=201 Identities=12% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 165 EEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKL 244 (801)
Q Consensus 165 i~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~ 244 (801)
...+...+..+..-+...+..+.....-. ....+....+....+..++......+..+...-..+.....
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~--d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~-------- 71 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGD--DLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGH-------- 71 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCcccCC--CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCC--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 245 LQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRV 324 (801)
Q Consensus 245 l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~ 324 (801)
.....+...+..+......+...+......+............-.. +..-+......+....-.. -...+.....
T Consensus 72 --~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~-l~~wl~~~e~~l~~~~~~~--~~~~~~~~l~ 146 (213)
T cd00176 72 --PDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADD-LEQWLEEKEAALASEDLGK--DLESVEELLK 146 (213)
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcccCC--CHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 325 ELQQVRDDRDHQLSQVQALTAEVIKHKE---------LAVSSEDLEARCASQSNQIRSLSDQLAA 380 (801)
Q Consensus 325 el~~l~~~~~~l~~e~~~l~~el~~l~~---------l~~~l~~le~~~~~l~~~~~~l~~~l~~ 380 (801)
+++.+...+......+..+......+.. +...+..+......+...+......+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~ 211 (213)
T cd00176 147 KHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEE 211 (213)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 463
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=70.55 E-value=45 Score=31.92 Aligned_cols=91 Identities=16% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 003711 213 SHASLSEDLGKAQEELQSANQRIAS----INDMYKLLQEYNSSLQHYNTKLQKDID----AAHESIKRGEKEKSAIVENL 284 (801)
Q Consensus 213 ~~~~l~~el~~l~~~l~~~~~~l~~----l~~~~~~l~~~~~~l~~~~~~l~~el~----~l~~~~~~l~~e~~~l~~~l 284 (801)
+...|+.++..|...+...+..... -.....-++.++..|-......-.++. .....+..+..+++.+..++
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV 176 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQV 176 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003711 285 STLRGQYISLQEQLSTYKA 303 (801)
Q Consensus 285 ~~l~~~~~~l~~~l~~~~~ 303 (801)
..|+.-+..-+.+|+.+++
T Consensus 177 ~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 177 DGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHhcC
No 464
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=70.51 E-value=1.6e+02 Score=31.69 Aligned_cols=268 Identities=10% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 172 IVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSS 251 (801)
Q Consensus 172 l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~ 251 (801)
+..+...+..+..-.......+.+....++.....-..+.............-...-..+...+..+..-++.....-..
T Consensus 73 ~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~~Wtr~~S~~~~~~l~~~~~~~~~~L~~A~~sD~~ 152 (353)
T cd09236 73 LERIRASLDDVARLAASDRAILEEAMDILDDEASEDESLRRKFGTDRWTRPDSHEANPKLYTQAAEYEGYLKQAGASDEL 152 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 252 LQHYNTKLQKDIDAAHESIKRGEKEKSAIVE-----NLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVEL 326 (801)
Q Consensus 252 l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~-----~l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~el 326 (801)
+...+...+..+.-+..-...+...+-.... .....-..+..+-.++..++.+...+...++.....-+-...-+
T Consensus 153 v~~k~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~~~DDI~~~ll 232 (353)
T cd09236 153 VRRKLDEWEDLIQILTGDERDLENFVPSSRRPSIPPELERHVRALRVSLEELDRLESRRRRKVERARTKARADDIRPEIL 232 (353)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHH
Q ss_pred HHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHH
Q 003711 327 QQVRDDRDHQ--------LSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTE 398 (801)
Q Consensus 327 ~~l~~~~~~l--------~~e~~~l~~el~~l~~l~~~l~~le~~~~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~ 398 (801)
.... .++.. ..--.-...++..+.. -...++..+.....-+..++.....+.. .........+
T Consensus 233 ~~~~-~~~~~~~~~~i~~~~fe~lf~~eL~kf~~---~~~~l~~~~~~Q~~ll~~i~~~n~~f~~-----~~~~~~~~~~ 303 (353)
T cd09236 233 REAA-RLEREYPATEVAPAHFEDLFDKRLAKYDK---DLDAVSEEAQEQEEILQQIEVANKAFLQ-----SRKGDPATKE 303 (353)
T ss_pred HHHH-hhhcccccccccHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHccChhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCceeEEeeeC
Q 003711 399 FEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELKGNIRVFCRVR 448 (801)
Q Consensus 399 ~~~~~~~l~~l~~~l~~l~~~l~~~e~~~~~l~~~l~~l~~~i~~~~r~~ 448 (801)
.+..-+.+...-....++...+.+...=...|...+..++..+..||.-|
T Consensus 304 re~~lq~L~~ay~~y~el~~nl~eG~kFY~dL~~~~~~~~~~~~~fv~~R 353 (353)
T cd09236 304 RERALQSLDLAYFKYKEIVSNLDEGRKFYNDLAKILSQFRDACKAWVYER 353 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
No 465
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=70.42 E-value=2.3 Score=42.53 Aligned_cols=28 Identities=36% Similarity=0.491 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCceEEEeeccCCcccceee
Q 003711 507 SQLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 507 ~~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
...|..++.... ..+..||.|||||+++
T Consensus 7 ~~Ai~~~~~~~~-~~~i~GpPGTGKT~~l 34 (236)
T PF13086_consen 7 REAIQSALSSNG-ITLIQGPPGTGKTTTL 34 (236)
T ss_dssp HHHHHHHCTSSE--EEEE-STTSSHHHHH
T ss_pred HHHHHHHHcCCC-CEEEECCCCCChHHHH
No 466
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=70.40 E-value=73 Score=33.44 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 003711 209 NMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAA--------HESIKRGEKEKSAI 280 (801)
Q Consensus 209 ~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l--------~~~~~~l~~e~~~l 280 (801)
+..++..+++.+.+++++......++++++.+........+......+..+...+..+ .+.+++++.++.+.
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 003711 281 VENLSTLRG 289 (801)
Q Consensus 281 ~~~l~~l~~ 289 (801)
...+.+.+.
T Consensus 81 ~~~l~DmEa 89 (330)
T PF07851_consen 81 RCQLFDMEA 89 (330)
T ss_pred HhhHHHHHh
No 467
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=70.38 E-value=33 Score=37.93 Aligned_cols=138 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhhhhhcccCceeEEeeeCCCCCCCCC-----CCCCceEEcCCCcc
Q 003711 398 EFEGQKKLINELRNHLEDAEYKLI--EGEKLRKRLHNTILELKGNIRVFCRVRPLLPDDSS-----GSEGKLISYPTTTE 470 (801)
Q Consensus 398 ~~~~~~~~l~~l~~~l~~l~~~l~--~~e~~~~~l~~~l~~l~~~i~~~~r~~~~~~~e~~-----~~~~~~~~~~~~~~ 470 (801)
.+..+...+.-+..+.+-++.+.. .++.+...+..++..+++-=...+.+..+...+.. .|...++.+...-+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 138 (438)
T PTZ00361 59 RLLKLERIKDYLLLEEEFITNQEAQKPAQEKNEAELKKVDDLRGSPLSVGTLEEIIDENHAIVSSSVGPEYYVNILSFVD 138 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCCcEEEEEEEEeCCCeEEEEeCCCCEEEEeccCcCC
Q ss_pred ----ccccceeeecCCceeEEEe-----------------ceecCCCCChhhHHHHHHHHHHHhhcC----------Cce
Q 003711 471 ----ALGRGIDIMQNGQKHSFSF-----------------DRVFMPDESQEDVFVEISQLVQSALDG----------YKV 519 (801)
Q Consensus 471 ----~~~~~i~~~~~~~~~~f~f-----------------d~v~~~~~~~~~~~~~~~~~v~~~~~G----------~n~ 519 (801)
..+..+.+-.....-...+ +--|..=...+....++...|...+.- ...
T Consensus 139 ~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~ 218 (438)
T PTZ00361 139 KEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPK 218 (438)
T ss_pred HhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCc
Q ss_pred EEEeeccCCcccceee
Q 003711 520 CIFAYGQTGSGKTYTM 535 (801)
Q Consensus 520 ~v~~yG~tgsGKt~tl 535 (801)
.|+.||++|||||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
No 468
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=70.22 E-value=68 Score=27.30 Aligned_cols=78 Identities=15% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH
Q 003711 250 SSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTL----------------------RGQYISLQEQLSTYKASQDE 307 (801)
Q Consensus 250 ~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l----------------------~~~~~~l~~~l~~~~~~~~~ 307 (801)
+........+..++..+...+..+..++..+...+..+ ..-+..++..+..+...+..
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003711 308 AMRQKDALVHEVASMRVELQ 327 (801)
Q Consensus 308 ~~~~~~~l~~e~~~l~~el~ 327 (801)
+...+..+..++..++..+.
T Consensus 81 l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 469
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=70.11 E-value=1.8 Score=42.91 Aligned_cols=15 Identities=40% Similarity=0.775 Sum_probs=0.0
Q ss_pred EEEeeccCCccccee
Q 003711 520 CIFAYGQTGSGKTYT 534 (801)
Q Consensus 520 ~v~~yG~tgsGKt~t 534 (801)
.|+-|||+|+|||++
T Consensus 153 nVLFyGppGTGKTm~ 167 (368)
T COG1223 153 NVLFYGPPGTGKTMM 167 (368)
T ss_pred eeEEECCCCccHHHH
No 470
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=69.91 E-value=2.1 Score=44.78 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=0.0
Q ss_pred cCCceEEEeeccCCcccce---eeccC
Q 003711 515 DGYKVCIFAYGQTGSGKTY---TMMGK 538 (801)
Q Consensus 515 ~G~n~~v~~yG~tgsGKt~---tl~G~ 538 (801)
.|...+||++|++|+|||. ||||.
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~ 46 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGT 46 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHh
No 471
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=69.91 E-value=1.3e+02 Score=30.44 Aligned_cols=231 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 109 KERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAK 188 (801)
Q Consensus 109 ~~~ie~l~~~i~~l~~~~~~l~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l~~ 188 (801)
+.++..+...+..+...+ +.+.......-...+..+...+..++..+..+...-......++..+...-..+..
T Consensus 4 ~~KL~~i~e~~~~f~~~l------e~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~ 77 (247)
T PF06705_consen 4 KSKLASINERFSGFESDL------ENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQE 77 (247)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 189 EESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQS-ANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAH 267 (801)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~-~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~ 267 (801)
. -..............+..+...+..+...+......+.. .......+...+..+...+..-......-+..+-.--
T Consensus 78 ~--v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl 155 (247)
T PF06705_consen 78 R--VENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRL 155 (247)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 003711 268 ESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDA-LVHEVASMRVELQQVRDDRDHQLSQVQALTAE 346 (801)
Q Consensus 268 ~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~-l~~e~~~l~~el~~l~~~~~~l~~e~~~l~~e 346 (801)
......-.. .+..+....+..+..+...++.+......-...... +..++..+...+..-...+.....++-..-..
T Consensus 156 ~e~~~~l~~--~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~ 233 (247)
T PF06705_consen 156 EEEENRLQE--KIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQSDDDIVQALNH 233 (247)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q ss_pred HHH
Q 003711 347 VIK 349 (801)
Q Consensus 347 l~~ 349 (801)
+..
T Consensus 234 yt~ 236 (247)
T PF06705_consen 234 YTK 236 (247)
T ss_pred HHH
No 472
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=69.89 E-value=32 Score=26.94 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003711 293 SLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALT 344 (801)
Q Consensus 293 ~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~~e~~~l~ 344 (801)
.++..+.+++..++-.+..++.++..+.....++..++..+..+..++..+.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 473
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=69.89 E-value=78 Score=33.24 Aligned_cols=81 Identities=11% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhHHHHHHHHHHH
Q 003711 272 RGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQV--------RDDRDHQLSQVQAL 343 (801)
Q Consensus 272 ~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l--------~~~~~~l~~e~~~l 343 (801)
+..++.+++.++..++++......++++++..........+...+..+..+...++.+ .+.+++++.++...
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 003711 344 TAEVIKHKE 352 (801)
Q Consensus 344 ~~el~~l~~ 352 (801)
...+.+++.
T Consensus 81 ~~~l~DmEa 89 (330)
T PF07851_consen 81 RCQLFDMEA 89 (330)
T ss_pred HhhHHHHHh
No 474
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=69.87 E-value=5.3 Score=43.15 Aligned_cols=106 Identities=17% Similarity=0.285 Sum_probs=0.0
Q ss_pred CCceeEEEece--ecCCCCChhhHHHHHHHHHHHhhcCCce----------EEEeeccCCcccceeeccCCCCCCCCCch
Q 003711 481 NGQKHSFSFDR--VFMPDESQEDVFVEISQLVQSALDGYKV----------CIFAYGQTGSGKTYTMMGKPGHPDLKGLI 548 (801)
Q Consensus 481 ~~~~~~f~fd~--v~~~~~~~~~~~~~~~~~v~~~~~G~n~----------~v~~yG~tgsGKt~tl~G~~~~~~~~Gii 548 (801)
.+.-..|.|++ -|+.=+-..++-+.|-.=++.++.|... .-+.|||.|||||..+
T Consensus 186 ~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~I------------- 252 (457)
T KOG0743|consen 186 GGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFI------------- 252 (457)
T ss_pred CCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHH-------------
Q ss_pred HHHHHHHHHHHHhhhhcCCeeeEEEEEEEEEccceecccCCCccchhhhhccCCCceEEEeCCCCCeEEcc
Q 003711 549 PRSLEQIFQTRQSLLSQGWKYEMQVSMLEIYNETIRDLLSTNRDASRLENACNGKQYAIKHDASGNTHVTD 619 (801)
Q Consensus 549 ~r~~~~lf~~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (801)
+.+..+ =...-|.+.++-+--..| ++-||...+. +...+.+|-+..+.+.+
T Consensus 253 --------aAmAn~-L~ydIydLeLt~v~~n~d-Lr~LL~~t~~----------kSIivIEDIDcs~~l~~ 303 (457)
T KOG0743|consen 253 --------AAMANY-LNYDIYDLELTEVKLDSD-LRHLLLATPN----------KSILLIEDIDCSFDLRE 303 (457)
T ss_pred --------HHHHhh-cCCceEEeeeccccCcHH-HHHHHHhCCC----------CcEEEEeeccccccccc
No 475
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=69.79 E-value=1.6 Score=39.70 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=0.0
Q ss_pred EEeeccCCcccceee
Q 003711 521 IFAYGQTGSGKTYTM 535 (801)
Q Consensus 521 v~~yG~tgsGKt~tl 535 (801)
|+.+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 476
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=69.78 E-value=79 Score=32.44 Aligned_cols=97 Identities=13% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 246 QEYNSSLQH-YNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRV 324 (801)
Q Consensus 246 ~~~~~~l~~-~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~ 324 (801)
...+..+.. ....++......--...+|.++...+.-++..|+..+.++..+|..-..+..+..++++.++..+.-|+.
T Consensus 110 EAs~~e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~ 189 (405)
T KOG2010|consen 110 EASLSELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQH 189 (405)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 003711 325 ELQQVRDDRDHQLSQVQA 342 (801)
Q Consensus 325 el~~l~~~~~~l~~e~~~ 342 (801)
...++++.+.+-.+-|++
T Consensus 190 ~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 190 KMEELKEGLRQRDELIEE 207 (405)
T ss_pred HHHHHHHHHHHHHHHHHH
No 477
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=69.73 E-value=1.7e+02 Score=31.63 Aligned_cols=157 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 003711 148 ELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETR--LNMERSHASLSEDLGKAQ 225 (801)
Q Consensus 148 ~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~~~~l~~el~~l~ 225 (801)
+....-.+.+-.....-+..+ ..........-+++++..++.+.......+...+.+. -..+.........+..++
T Consensus 143 ~~A~~ian~l~~~~~~~i~~~--~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~ 220 (362)
T TIGR01010 143 EEAQKINQRLLKEGERLINRL--NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLE 220 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 226 EELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESI--------KRGEKEKSAIVENLSTLRGQYISLQEQ 297 (801)
Q Consensus 226 ~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~--------~~l~~e~~~l~~~l~~l~~~~~~l~~~ 297 (801)
.++..++.++..+......-.-.+..++.++..++.++.....++ .....+...++.+.+..+..++.+-..
T Consensus 221 ~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r 300 (362)
T TIGR01010 221 GELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTS 300 (362)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 003711 298 LSTYKASQD 306 (801)
Q Consensus 298 l~~~~~~~~ 306 (801)
+++.+....
T Consensus 301 ~~~a~~~~~ 309 (362)
T TIGR01010 301 LQQTRVEAD 309 (362)
T ss_pred HHHHHHHHH
No 478
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=69.60 E-value=74 Score=27.53 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 222 GKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQ-----KDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQE 296 (801)
Q Consensus 222 ~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~-----~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~ 296 (801)
+.....+..+...+......+..+......+...+.... ..+.....-+..+...+......+..++.+++....
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003711 297 QLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDD 332 (801)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~ 332 (801)
.+.........++.-.+.............+...-+
T Consensus 81 ~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq~~lD 116 (123)
T PF02050_consen 81 ELQEARRERKKLEKLKERRREEYQQEEERREQKELD 116 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=69.53 E-value=1.8 Score=41.91 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=0.0
Q ss_pred hhcCCceEE------EeeccCCcccceee
Q 003711 513 ALDGYKVCI------FAYGQTGSGKTYTM 535 (801)
Q Consensus 513 ~~~G~n~~v------~~yG~tgsGKt~tl 535 (801)
+++|.|.+| .-.||+|||||+.+
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHH
No 480
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=69.52 E-value=1.7e+02 Score=31.74 Aligned_cols=249 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHhHHHhhcchhhhHHHHHHHHHHHHHHHHHHH---------------------HHHH------HhhhhHHHHHHH
Q 003711 91 DVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIK---------------------WFQE------LEGDYAFEHERL 143 (801)
Q Consensus 91 e~~~l~~e~~~~~~~~~~~~~ie~l~~~i~~l~~~~~---------------------~l~~------~~~~~~~e~~~l 143 (801)
|+..+..+...+.+..--..+-+-+..+|..|+.++. .+.. .......++++-
T Consensus 203 E~k~~qeel~~~~~~~~d~~EkE~Ll~EIq~Lk~qL~~~~~ss~s~~~~~~sll~~s~~~~~~~~~~~~~~~~~~~le~e 282 (488)
T PF06548_consen 203 ELKRVQEELEEYRNFSFDMGEKEVLLEEIQDLKSQLQYYTDSSMSTDRLRSSLLQRSYQLRPSAIPESGDENAEEELEQE 282 (488)
T ss_pred HHHHHHHHHHhccccccCcchHHHHHHHHHHHHHHHHhccccccccccccccHHhhhhccCCCCCcccCCCchhhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 144 RNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGK 223 (801)
Q Consensus 144 ~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~ 223 (801)
+....+++.++-.+..++..+++.-+.....++.++..-+.--+.+......+..-.....++..++++....|-.....
T Consensus 283 r~~wtE~ES~WIsLteeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~ 362 (488)
T PF06548_consen 283 RQRWTEAESKWISLTEELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRR 362 (488)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 224 AQEELQSANQRIASI------NDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQ 297 (801)
Q Consensus 224 l~~~l~~~~~~l~~l------~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~ 297 (801)
+..-+.+.+...... ..-+..+..++..+..+..+-..-+..-+..++.--.+-.+....-.++--++.+.+.-
T Consensus 363 i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea 442 (488)
T PF06548_consen 363 IMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEA 442 (488)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003711 298 LSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQ 339 (801)
Q Consensus 298 l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~~e 339 (801)
....+......+++.+.+..+++.++...+.--..+.....+
T Consensus 443 ~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~kq~lae 484 (488)
T PF06548_consen 443 ASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTMKQYLAE 484 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 481
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=69.52 E-value=2.4e+02 Score=33.33 Aligned_cols=268 Identities=12% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 164 KEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYK 243 (801)
Q Consensus 164 ei~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~ 243 (801)
++.+|..-+...-.-+... +-..-.....+.....+...=+.+....+..|...++.+..-+..+..-++..-..++
T Consensus 5 ql~qlt~i~~~~~~~L~~~---i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai~~~l~lIe~~v~~ie 81 (683)
T PF08580_consen 5 QLSQLTSILLPIALYLSES---IPTAFNAVKALSGAAEQILDWIQKAKDVLYGLREGLEEIDSAISRFLDLIEVYVSAIE 81 (683)
T ss_pred HHHHHHhcccchHHHHHHH---hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccc
Q ss_pred HHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 003711 244 LLQ--EYNSS-LQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQ--------- 311 (801)
Q Consensus 244 ~l~--~~~~~-l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~--------- 311 (801)
+++ .++.. +...++...+-...+...+..++..++-..+=-+=...-+..+..+++++-..+-++++.
T Consensus 82 ~~q~r~di~~~~~dl~e~vsqm~~~vK~~L~~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~ 161 (683)
T PF08580_consen 82 DLQLREDIANSLFDLIEEVSQMELDVKKTLISVKKQVEIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSPVRHG 161 (683)
T ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccC
Q ss_pred -----HHHHHHHH--------------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q 003711 312 -----KDALVHEV--------------------ASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-----LAVSSEDLE 361 (801)
Q Consensus 312 -----~~~l~~e~--------------------~~l~~el~~l~~~~~~l~~e~~~l~~el~~l~~-----l~~~l~~le 361 (801)
++.+-+++ +.+...+-.+...+.-++.-+.-|=..++..+. .....+.|+
T Consensus 162 lp~~~Le~Ive~~~~~~~~~~~~~~lPtF~~~Desl~~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e~L~ 241 (683)
T PF08580_consen 162 LPIFELETIVEEMPSSTNSSNKRFSLPTFSPQDESLYSSLLALFARMQPLRASLDFLPMRIEEFQSRAESIFPSACEELE 241 (683)
T ss_pred CCcccHHHHHHhccccCCCCcCCcCCCCCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------hhhhHHhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Q 003711 362 ARCASQSNQIRSLSDQLAAAEEKLEV------SDLSALETKTEFEGQKKLINELRNHLED---------AEYKLIEGEKL 426 (801)
Q Consensus 362 ~~~~~l~~~~~~l~~~l~~l~~~l~~------~~~~~~~~~~~~~~~~~~l~~l~~~l~~---------l~~~l~~~e~~ 426 (801)
.....+......|+.+++.++.++-+ ......++...++.+...+..+...... +..++...+..
T Consensus 242 ~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k 321 (683)
T PF08580_consen 242 DRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKK 321 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHH
Q ss_pred Hhhhhhhh
Q 003711 427 RKRLHNTI 434 (801)
Q Consensus 427 ~~~l~~~l 434 (801)
+.+...-|
T Consensus 322 ~~~~~~~I 329 (683)
T PF08580_consen 322 KSHYFPAI 329 (683)
T ss_pred HhccHHHH
No 482
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.42 E-value=1.2e+02 Score=29.66 Aligned_cols=140 Identities=11% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 180 ASLQEKLAKEESDKLAALDSL-AREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTK 258 (801)
Q Consensus 180 ~~l~~~l~~l~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~ 258 (801)
..+...+.+............ ......+...-..+.....+.+.+...+.+.+.++....+-+++-......+++++..
T Consensus 18 d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~ 97 (246)
T KOG4657|consen 18 DICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKA 97 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 259 LQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEV 319 (801)
Q Consensus 259 l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~ 319 (801)
.+++++.+...++.++.++.....-+.....-+...+...-+-++.-....+.+.-.+.-+
T Consensus 98 ~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kRkQdsa~~~e~a~wy~dyL 158 (246)
T KOG4657|consen 98 TQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKRKQDSADIHEAASWYNDYL 158 (246)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHhc
No 483
>PRK10536 hypothetical protein; Provisional
Probab=69.29 E-value=2.4 Score=42.69 Aligned_cols=39 Identities=33% Similarity=0.494 Sum_probs=0.0
Q ss_pred EEEeceecCCCCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccce
Q 003711 486 SFSFDRVFMPDESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTY 533 (801)
Q Consensus 486 ~f~fd~v~~~~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~ 533 (801)
.|.|..|-+-+..|......+.. +--|+..|+.||||||
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~al~~---------~~lV~i~G~aGTGKT~ 89 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLKAIES---------KQLIFATGEAGCGKTW 89 (262)
T ss_pred hcCCccccCCCHHHHHHHHHHhc---------CCeEEEECCCCCCHHH
No 484
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=69.22 E-value=62 Score=27.82 Aligned_cols=66 Identities=18% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 260 QKDIDAAHESIKRGEKEKSAIVENLSTL--RGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVE 325 (801)
Q Consensus 260 ~~el~~l~~~~~~l~~e~~~l~~~l~~l--~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~e 325 (801)
..++..+.+.+......+..++.++..+ ..++..++..+.+++..+..+..+++.+.....-|-+.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 485
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=69.18 E-value=70 Score=27.09 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 003711 175 LRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQ---RIASINDMYKLLQEYNSS 251 (801)
Q Consensus 175 l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~l~~~l~~~~~---~l~~l~~~~~~l~~~~~~ 251 (801)
++.++......+.-++.--......+.........+...+..+......++..+..+.. ++..++.....+......
T Consensus 12 v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~ 91 (99)
T PF10046_consen 12 VESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKE 91 (99)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 003711 252 LQHYNTKL 259 (801)
Q Consensus 252 l~~~~~~l 259 (801)
++..+..+
T Consensus 92 LE~k~k~l 99 (99)
T PF10046_consen 92 LESKFKKL 99 (99)
T ss_pred HHHHhhcC
No 486
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=69.10 E-value=68 Score=29.77 Aligned_cols=78 Identities=12% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 003711 229 QSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEK---EKSAIVENLSTLRGQYI----SLQEQLSTY 301 (801)
Q Consensus 229 ~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~---e~~~l~~~l~~l~~~~~----~l~~~l~~~ 301 (801)
+.+..-....-..+...+........++..++.++.....++..|+. ..++++.++..++..+. .++.++...
T Consensus 2 eqi~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 2 EQIDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred hHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 003711 302 KASQD 306 (801)
Q Consensus 302 ~~~~~ 306 (801)
.....
T Consensus 82 ~~~~a 86 (155)
T PF06810_consen 82 KKDSA 86 (155)
T ss_pred HHHHH
No 487
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=69.08 E-value=1.7e+02 Score=35.31 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 003711 238 INDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQD-EAMRQKDALV 316 (801)
Q Consensus 238 l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~-~~~~~~~~l~ 316 (801)
++....-+.....++..-+..++.+...++.....++....++......++.+.+.++.+......+.. ++.+.+..++
T Consensus 499 i~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~ 578 (771)
T TIGR01069 499 IEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALK 578 (771)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003711 317 HEVASMRVELQQVRDDRDHQLSQVQALTA 345 (801)
Q Consensus 317 ~e~~~l~~el~~l~~~~~~l~~e~~~l~~ 345 (801)
.+.+.+-.++.+..............+..
T Consensus 579 ~~~~~~i~~lk~~~~~~~~~~~~~~~~~~ 607 (771)
T TIGR01069 579 KEVESIIRELKEKKIHKAKEIKSIEDLVK 607 (771)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHH
No 488
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=69.07 E-value=1.5e+02 Score=30.83 Aligned_cols=162 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 226 EELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQ 305 (801)
Q Consensus 226 ~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~ 305 (801)
...++..+.--++-..++++.+.+..+. ...+...+..+...+...+..++++..++.+++..+..++..+.......
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms--~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~ 118 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKLKEMS--STQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITE 118 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 306 DEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKL 385 (801)
Q Consensus 306 ~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~~e~~~l~~el~~l~~l~~~l~~le~~~~~l~~~~~~l~~~l~~l~~~l 385 (801)
.. .+...-..+......+..+..++...+.++............ .+..+..+.-.+.....--...+-..-...
T Consensus 119 ~~---~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~---~l~~~~~~~~~~ir~~~~e~~~~~~sl~~~ 192 (301)
T PF06120_consen 119 NG---YIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQA---TLNDLTEQRIDLIRQKAAEQAGAYNSLKGM 192 (301)
T ss_pred ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhHHhH
Q 003711 386 EVSDLSALET 395 (801)
Q Consensus 386 ~~~~~~~~~~ 395 (801)
......+..+
T Consensus 193 ~g~~~ef~~l 202 (301)
T PF06120_consen 193 NGAHAEFNRL 202 (301)
T ss_pred hccHHHHHHH
No 489
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=68.94 E-value=1.8e+02 Score=34.96 Aligned_cols=112 Identities=5% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 239 NDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHE 318 (801)
Q Consensus 239 ~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~e 318 (801)
..-++..++.+.....++..+-.++.....+++....++.....+++..+.+++....++.+.+..+ +.+..+++++.
T Consensus 496 ~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~--~~~a~~ea~~~ 573 (771)
T TIGR01069 496 HFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK--KLELEKEAQEA 573 (771)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003711 319 VASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (801)
Q Consensus 319 ~~~l~~el~~l~~~~~~l~~e~~~l~~el~~l~~ 352 (801)
+..++.+.+.+-.++................+..
T Consensus 574 ~~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~ 607 (771)
T TIGR01069 574 LKALKKEVESIIRELKEKKIHKAKEIKSIEDLVK 607 (771)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
No 490
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=68.80 E-value=89 Score=28.13 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 213 SHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRG 289 (801)
Q Consensus 213 ~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~ 289 (801)
+...+...++.....+......+..+...+..+......-+.....|...+......+..-+..+..+..+.+.++.
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
No 491
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=68.80 E-value=2.2 Score=43.74 Aligned_cols=15 Identities=53% Similarity=0.696 Sum_probs=0.0
Q ss_pred eEEEeeccCCcccce
Q 003711 519 VCIFAYGQTGSGKTY 533 (801)
Q Consensus 519 ~~v~~yG~tgsGKt~ 533 (801)
+-|+..||||||||+
T Consensus 98 SNILLiGPTGsGKTl 112 (408)
T COG1219 98 SNILLIGPTGSGKTL 112 (408)
T ss_pred ccEEEECCCCCcHHH
No 492
>PHA00729 NTP-binding motif containing protein
Probab=68.71 E-value=4.1 Score=40.31 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCceEEEeeccCCcccce
Q 003711 506 ISQLVQSALDGYKVCIFAYGQTGSGKTY 533 (801)
Q Consensus 506 ~~~~v~~~~~G~n~~v~~yG~tgsGKt~ 533 (801)
...++..+..|.=..|+.+|++|+||||
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~ 32 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTT 32 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHH
No 493
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=68.63 E-value=5.9 Score=41.09 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=0.0
Q ss_pred hhHHHHHHHHH-HHhhcCCceEEEeeccCCcccceee
Q 003711 500 EDVFVEISQLV-QSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 500 ~~~~~~~~~~v-~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
.+-+..+..++ +.++.|-.-+|+-.||.|||||+.+
T Consensus 30 ~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li 66 (408)
T KOG2228|consen 30 QDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILI 66 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEee
No 494
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=68.54 E-value=4.1 Score=43.65 Aligned_cols=42 Identities=29% Similarity=0.192 Sum_probs=0.0
Q ss_pred CCCCChhhHHHHHHHHHHHhhcCC-----ceEEEeeccCCcccceee
Q 003711 494 MPDESQEDVFVEISQLVQSALDGY-----KVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~G~-----n~~v~~yG~tgsGKt~tl 535 (801)
+........|.+....+..++.-- ...|...||||-|||+|+
T Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 174 DESYEDLRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTL 220 (407)
T ss_pred ccccchhhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHH
No 495
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=68.28 E-value=3.3 Score=44.79 Aligned_cols=37 Identities=24% Similarity=0.523 Sum_probs=0.0
Q ss_pred CCChhhHHHHHHHHHHHhhcCCceEEEeeccCCcccceee
Q 003711 496 DESQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTM 535 (801)
Q Consensus 496 ~~~~~~~~~~~~~~v~~~~~G~n~~v~~yG~tgsGKt~tl 535 (801)
+..|..+|+.|-..+.. .....+|..|+.|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~---~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN---EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc---cCCcEEEEEcCCCCChhHHH
No 496
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=68.27 E-value=1.3e+02 Score=29.84 Aligned_cols=122 Identities=12% Similarity=0.092 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 133 EGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMER 212 (801)
Q Consensus 133 ~~~~~~e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 212 (801)
.......+.+....++.....+..++--.+--..........++..+..++.++..++.++..+...-+..+. ....
T Consensus 99 ~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~---~~~~ 175 (221)
T PF05700_consen 99 VEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQE---EAGE 175 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 213 SHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNT 257 (801)
Q Consensus 213 ~~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~ 257 (801)
++..|+..-..+-...-++...+..++.++..++......+....
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~~~ 220 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKENQQ 220 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
No 497
>PRK00295 hypothetical protein; Provisional
Probab=68.23 E-value=52 Score=25.69 Aligned_cols=51 Identities=10% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003711 294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALT 344 (801)
Q Consensus 294 l~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~el~~l~~~~~~l~~e~~~l~ 344 (801)
++..+.+++.+++-.+..++.++..+...+.++..+..++..+..++..+.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 498
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=67.99 E-value=1.8e+02 Score=31.31 Aligned_cols=245 Identities=16% Similarity=0.093 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccCCCCcccchhhhhcccccccccccccccccccccccCcccCCCCCCCCCCCCC
Q 003711 1 MASNNQNKPPVLSNNITKASPSSNKKKLGVDEVTCDKEQKFGAEKMVGTANNARIRQAFSVVNGIQDLGLSSNPASNAGS 80 (801)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (801)
.++-.+|-+.|.|+-+...+++....+..+.+... |+-=+-+.-|+|.+++.+ ..+|..+.+-++++
T Consensus 308 S~s~rqp~~~P~ptesq~g~s~~~~e~~~~PsGea-KrEVPltre~~~e~~~rp------------rts~RPgsaRPApp 374 (583)
T KOG3809|consen 308 SLSIRQPVTSPLPTESQMGESPRMIEPEDRPSGEA-KREVPLTREMTGEGGGRP------------RTSMRPGSARPAPP 374 (583)
T ss_pred cccccCCCCCCCCcccccCCCccccCCCCCCcccc-cccCCCCccCcccccCCc------------ccCCCCCCCCCCCc
Q ss_pred CCcchhccHHHHHHHHhHHHhhcch---------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003711 81 ECGTIEFTREDVEALLSEKMRYKNK---------------------------FNYKERCENMMDYIKRLRLCIKWFQELE 133 (801)
Q Consensus 81 ~~~~~~~~~~e~~~l~~e~~~~~~~---------------------------~~~~~~ie~l~~~i~~l~~~~~~l~~~~ 133 (801)
-..-+..++.+.......... .+.-+.+..+-.+..++...-
T Consensus 375 ----ra~r~~~ie~v~~~~~~~~~~~snVi~e~~~~~~edd~nfV~e~d~~~~d~~e~~~d~~~ee~~ldaqG------- 443 (583)
T KOG3809|consen 375 ----RALRKKQIETVDSTPQVVVELKSNVISEAPKVETEDDSNFVMENDEEDGDRTERIEDLVDEEDRLDAQG------- 443 (583)
T ss_pred ----cchhhhhhhhhhCCchhhhhhhhhhcccCCCCccccccceeeeccccccchhhhcccchhhhhhhhhhh-------
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 134 GDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERS 213 (801)
Q Consensus 134 ~~~~~e~~~l~~~l~~~~~~~~~l~~~l~~ei~~l~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 213 (801)
.|-..|-+.+.++.....+-+-.-.+..........++..++..++.|.....=+-.-++-..+.+..++.+
T Consensus 444 --------~LVqkIlETkke~e~~g~~~~p~e~~a~~~~sa~~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~E 515 (583)
T KOG3809|consen 444 --------ALVQKILETKKEIEDGGGQDQPEESDADKIMSAEREKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKE 515 (583)
T ss_pred --------hHHHHHHHHHHHHHhcCCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003711 214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAI 280 (801)
Q Consensus 214 ~~~l~~el~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l 280 (801)
+.....+......++. .+...-....+-|...++.++..+...+..+......+-.-+..+..+
T Consensus 516 L~mWrse~rq~~~elq---~eq~~t~~a~epL~~~la~lq~~I~d~~e~i~~~r~~IL~Ne~rIqk~ 579 (583)
T KOG3809|consen 516 LEMWRSEQRQNEQELQ---NEQAATFGASEPLYNILANLQKEINDTKEEISKARGRILNNEKRIQKF 579 (583)
T ss_pred HHHHHHHHHHhHHHHH---hhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
No 499
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=67.85 E-value=7.8 Score=42.76 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=0.0
Q ss_pred EEeeccCCcccceee---ccCCCCCCCCCchHHHHHHHHHHHHhh------------------hhcCCeeeEEEEEEEE-
Q 003711 521 IFAYGQTGSGKTYTM---MGKPGHPDLKGLIPRSLEQIFQTRQSL------------------LSQGWKYEMQVSMLEI- 578 (801)
Q Consensus 521 v~~yG~tgsGKt~tl---~G~~~~~~~~Gii~r~~~~lf~~~~~~------------------~~~~~~~~v~~S~~ei- 578 (801)
||-.|||.|||||.- ++.....-.-|-+-....++|+..+.. .....+++++|-|+-+
T Consensus 194 i~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~~~~~~~~~a~hvScTVEM~sv~ 273 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERRFVLDNGNPAQHVSCTVEMVSVN 273 (700)
T ss_pred EEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceeeecCCCCCcccceEEEEEEeecC
Q ss_pred --Eccceec
Q 003711 579 --YNETIRD 585 (801)
Q Consensus 579 --~~e~v~D 585 (801)
|.=.|.|
T Consensus 274 ~~yeVAViD 282 (700)
T KOG0953|consen 274 TPYEVAVID 282 (700)
T ss_pred CceEEEEeh
No 500
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=67.80 E-value=91 Score=28.34 Aligned_cols=97 Identities=13% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 003711 240 DMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQ-KDALVHE 318 (801)
Q Consensus 240 ~~~~~l~~~~~~l~~~~~~l~~el~~l~~~~~~l~~e~~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~~~~~-~~~l~~e 318 (801)
+.++...+....+..++-+....+.-....+.....+++.+...+..+...++.+...+.-+.....+...- ++.+..+
T Consensus 44 e~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eq 123 (157)
T COG3352 44 EVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQ 123 (157)
T ss_pred HHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 003711 319 VASMRVELQQVRDDRDHQ 336 (801)
Q Consensus 319 ~~~l~~el~~l~~~~~~l 336 (801)
+..+...++.....+..+
T Consensus 124 V~el~~i~emv~~d~~~l 141 (157)
T COG3352 124 VNELKMIVEMVIKDLREL 141 (157)
T ss_pred HHHHHHHHHHHhccchhh
Done!