BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003712
(801 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 121/172 (70%), Gaps = 6/172 (3%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF DV I G+ V R+V ELF+DI PKTAENFRALCTGEKGIGP TGKPLH+KG FHR+I
Sbjct: 18 VFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRII 77
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
K M +GGDF ++GT GESIY KF DE+ KHD+ GLLSM+ A +T GSQF IT
Sbjct: 78 KKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTV 137
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENV---GDEEGRLTVTVKIINCGEVSE 177
LD K+VVFG++++G + K +ENV G++ +L V I CGE+ E
Sbjct: 138 PTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCV---IAECGELKE 186
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 114/168 (67%), Gaps = 1/168 (0%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
F D++I+ P R+VFELFSD+ PKT ENFR LCTGEKG G T KPLHYK FHRV+
Sbjct: 12 CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVV 71
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
K M +GGDF + +G GESIY G F DES +KH++ LLSM+ +DT GSQF IT K
Sbjct: 72 KDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTK 131
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEV 175
LD +VVFG+++ G E++++IEN D + V+I++CGE+
Sbjct: 132 PTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 114/168 (67%), Gaps = 1/168 (0%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
F D++I+ P R+VFELFSD+ PKT ENFR LCTGEKG G T KPLHYK FHRV+
Sbjct: 12 CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVV 71
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
K M +GGDF + +G GESIY G F DES +KH++ LLSM+ +DT GSQF IT K
Sbjct: 72 KDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTK 131
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEV 175
LD +VVFG+++ G E++++IEN D + V+I++CGE+
Sbjct: 132 PTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 113/168 (67%), Gaps = 1/168 (0%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
F D++I+ P R+VFELFSD+ PKT ENFR LCTGEKG G T KPLHYK FHRV+
Sbjct: 29 CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVV 88
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
K M +GGDF + +G GESIY G F DES +KH+ LLSM+ +DT GSQF IT K
Sbjct: 89 KDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITTK 148
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEV 175
LD +VVFG+++ G E++++IEN D + V+I++CGE+
Sbjct: 149 PTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 173 bits (438), Expect = 4e-43, Method: Composition-based stats.
Identities = 91/176 (51%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Query: 1 MAKKKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYK 60
M+KK VF+DV+IDG+ R+V EL++DIAP+T NF LCTG G G +GKPLHYK
Sbjct: 1 MSKKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYK 60
Query: 61 GSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLG 120
GS FHRVIK M +GGDF K DGT GESIY G F DE +KHD P ++SM+ +T G
Sbjct: 61 GSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNG 120
Query: 121 SQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVG-DEEGRLTVTVKIINCGEV 175
SQF IT L+ +VVFG++V G E++ KIE + + + R V I+NCGE+
Sbjct: 121 SQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 89/167 (53%), Positives = 113/167 (67%), Gaps = 8/167 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
V+ DV DG P+ R+VF+L++DI PKTAENFRALCTGEKG G Y GS FHRVI
Sbjct: 4 VYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG--------YAGSPFHRVI 55
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
M +GGDF +GT G+SIY GKFPDE+ + HDRPGLLSM+ A +T GSQF IT
Sbjct: 56 PDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTV 115
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD K+VVFGE+V G++I+KK+E++G G + + GE+
Sbjct: 116 PCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 172 bits (436), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 114/174 (65%), Gaps = 4/174 (2%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+SID R+V EL++D PKTAENFRALCTGEKG G R+GKPLHYK S FHRVI
Sbjct: 10 VFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKG-RSGKPLHYKSSVFHRVI 68
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLK---HDRPGLLSMSIADRDTLGSQFII 125
M +GGDF + +GT GESIY F DES K H G LSM+ A +T GSQF I
Sbjct: 69 PNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFI 128
Query: 126 TFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVSEDK 179
A LD K+VVFG ++ G +++KK+E +G G+ + + +CGEV+ DK
Sbjct: 129 CTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTRSRIVVSDCGEVAADK 182
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 115/167 (68%), Gaps = 1/167 (0%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D++I G R+V EL+ D+ PKTA NFRALCTGE GIG ++GKPLH+KGS FHR+I
Sbjct: 6 VFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIG-KSGKPLHFKGSKFHRII 64
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
M +GGDF + +GT GESIY KFPDE+ + KH PG+LSM+ A +T GSQF +
Sbjct: 65 PNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD K+VVFG +V+G +++K +E+ G + G+ I +CG++
Sbjct: 125 KTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/166 (51%), Positives = 114/166 (68%), Gaps = 2/166 (1%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+SID R++FELFSDI P+T ENFRALCTGEK IG R GK LHYK S FHR+I
Sbjct: 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSR-GKNLHYKNSIFHRII 63
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
M +GGD +G+ GESIY F DE+ +KHD+PGLLSM+ A +T SQF+IT
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLV 123
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGE 174
LD K+VVFG++++G +++++E G + G + +V I +CGE
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGE 169
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 114/169 (67%), Gaps = 8/169 (4%)
Query: 8 LVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRV 67
LV++DV +G P+ R+V EL +D+ PKTAENFRALCTGEKG G YKGS FHRV
Sbjct: 5 LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTFHRV 56
Query: 68 IKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITF 127
I M + GDF +GT G+SIY +FPDE+ LKH PG+LSM+ A +T GSQF I
Sbjct: 57 IPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICT 116
Query: 128 KANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVS 176
LD K+VVFG +++G +++KKIE+ G + GR + + I +CG++S
Sbjct: 117 IKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/167 (51%), Positives = 114/167 (68%), Gaps = 2/167 (1%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+SID R++FELFSDI P+T ENFRALCTGEK IG R GK LHYK S FHR+I
Sbjct: 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSR-GKNLHYKNSIFHRII 63
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
M +GGD +G+ GESIY F DE+ +KHD+PGLLSM+ A +T SQF IT
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD K+VVFG++++G +++++E G + G + +V I +CGE+
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 169 bits (429), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 114/169 (67%), Gaps = 8/169 (4%)
Query: 8 LVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRV 67
LV++DV +G P+ R+V EL +D+ PKTAENFRALCTGEKG G YKGS FHRV
Sbjct: 6 LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTFHRV 57
Query: 68 IKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITF 127
I M + GDF +GT G+SIY +FPDE+ LKH PG+LSM+ A +T GSQF I
Sbjct: 58 IPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICT 117
Query: 128 KANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVS 176
LD K+VVFG +++G +++KKIE+ G + GR + + I +CG++S
Sbjct: 118 IKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 166
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 169 bits (429), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 114/169 (67%), Gaps = 8/169 (4%)
Query: 8 LVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRV 67
LV++DV +G P+ R+V EL +D+ PKTAENFRALCTGEKG G YKGS FHRV
Sbjct: 5 LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTFHRV 56
Query: 68 IKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITF 127
I M + GDF +GT G+SIY +FPDE+ LKH PG+LSM+ A +T GSQF I
Sbjct: 57 IPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICT 116
Query: 128 KANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVS 176
LD K+VVFG +++G +++KKIE+ G + GR + + I +CG++S
Sbjct: 117 IKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 169 bits (428), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 114/169 (67%), Gaps = 8/169 (4%)
Query: 8 LVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRV 67
LV++DV +G P+ R+V EL +D+ PKTAENFRALCTGEKG G YKGS FHRV
Sbjct: 4 LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTFHRV 55
Query: 68 IKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITF 127
I M + GDF +GT G+SIY +FPDE+ LKH PG+LSM+ A +T GSQF I
Sbjct: 56 IPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICT 115
Query: 128 KANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVS 176
LD K+VVFG +++G +++KKIE+ G + GR + + I +CG++S
Sbjct: 116 IKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 164
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 114/167 (68%), Gaps = 1/167 (0%)
Query: 11 MDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKG 70
D+ I+ +PV R++F+LFSDI PKT +NF LC+GEKG+G TGK L YKGS FHRV+K
Sbjct: 24 FDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKN 83
Query: 71 SMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKAN 130
M +GGDF + +G GESIY G F DE+ LKHDR LLSM+ + T GSQF IT K
Sbjct: 84 FMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPA 143
Query: 131 HSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEVS 176
LD +VVFG ++ G E++++IEN+ D R V++I+CG ++
Sbjct: 144 PHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLA 190
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 164 bits (416), Expect = 2e-40, Method: Composition-based stats.
Identities = 88/166 (53%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Query: 8 LVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRV 67
+V+ D+SI P R+ ELF+D P TAENFRALCTGEKG+G ++GKPL Y GSFFHR+
Sbjct: 21 VVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMG-QSGKPLCYTGSFFHRI 79
Query: 68 IKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITF 127
I M +GGDF + DGT GESIY KF DE+ HD P LLSM+ A +T GSQF IT
Sbjct: 80 IPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITT 139
Query: 128 KANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCG 173
LD K+VVFG++++G E++K IE G + G+ T +V I G
Sbjct: 140 VPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASG 185
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 160 bits (406), Expect = 2e-39, Method: Composition-based stats.
Identities = 83/168 (49%), Positives = 109/168 (64%), Gaps = 8/168 (4%)
Query: 8 LVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRV 67
+VF DV DG+P+ R+ ELFS+I P+TAENFRALCTGEKG G +K S FHRV
Sbjct: 8 VVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG--------FKNSIFHRV 59
Query: 68 IKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITF 127
I + +GGD K DGT G+SIY KF DE+ +KH PGLLSM+ ++T SQF+IT
Sbjct: 60 IPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITL 119
Query: 128 KANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
K LD K+VVFG + G + +KKIE+ G +G + + I CG++
Sbjct: 120 KKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQI 167
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 160 bits (404), Expect = 3e-39, Method: Composition-based stats.
Identities = 82/167 (49%), Positives = 111/167 (66%), Gaps = 8/167 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+++DG+P+ R+ FELF+D PKTAENFRAL TGEKG G YKGS FHR+I
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHRII 57
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
G M +GGDF + +GT G+SIY KF DE+ LKH PG+LSM+ A +T GSQF I
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD K+VVFG++ +G I++ +E G G+ + + I +CG++
Sbjct: 118 KTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 160 bits (404), Expect = 3e-39, Method: Composition-based stats.
Identities = 82/167 (49%), Positives = 111/167 (66%), Gaps = 8/167 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+++DG+P+ R+ FELF+D PKTAENFRAL TGEKG G YKGS FHR+I
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHRII 57
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
G M +GGDF + +GT G+SIY KF DE+ LKH PG+LSM+ A +T GSQF I
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD K+VVFG++ +G I++ +E G G+ + + I +CG++
Sbjct: 118 KTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 160 bits (404), Expect = 4e-39, Method: Composition-based stats.
Identities = 82/167 (49%), Positives = 111/167 (66%), Gaps = 8/167 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+++DG+P+ R+ FELF+D PKTAENFRAL TGEKG G YKGS FHR+I
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHRII 57
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
G M +GGDF + +GT G+SIY KF DE+ LKH PG+LSM+ A +T GSQF I
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD K+VVFG++ +G I++ +E G G+ + + I +CG++
Sbjct: 118 KTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 160 bits (404), Expect = 4e-39, Method: Composition-based stats.
Identities = 82/167 (49%), Positives = 111/167 (66%), Gaps = 8/167 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+++DG+P+ R+ FELF+D PKTAENFRAL TGEKG G YKGS FHR+I
Sbjct: 5 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHRII 56
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
G M +GGDF + +GT G+SIY KF DE+ LKH PG+LSM+ A +T GSQF I
Sbjct: 57 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 116
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD K+VVFG++ +G I++ +E G G+ + + I +CG++
Sbjct: 117 KTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 159 bits (403), Expect = 4e-39, Method: Composition-based stats.
Identities = 81/167 (48%), Positives = 111/167 (66%), Gaps = 8/167 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+++DG+P+ R+ FELF+D PKTAENFRAL TGEKG G YKGS FHR+I
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHRII 57
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
G M +GGDF + +GT G+SIY KF DE+ LKH PG+L+M+ A +T GSQF I
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTA 117
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD K+VVFG++ +G I++ +E G G+ + + I +CG++
Sbjct: 118 KTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 159 bits (402), Expect = 6e-39, Method: Composition-based stats.
Identities = 82/167 (49%), Positives = 111/167 (66%), Gaps = 8/167 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+++DG+P+ R+ FELF+D PKTAENFRAL TGEKG G YKGS FHR+I
Sbjct: 25 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHRII 76
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
G M +GGDF + +GT G+SIY KF DE+ LKH PG+LSM+ A +T GSQF I
Sbjct: 77 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 136
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD K+VVFG++ +G I++ +E G G+ + + I +CG++
Sbjct: 137 KTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 183
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 159 bits (402), Expect = 6e-39, Method: Composition-based stats.
Identities = 82/167 (49%), Positives = 110/167 (65%), Gaps = 8/167 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+++DG+P+ R+ FELF+D PKTAENFRAL TGEKG G YKGS FHR+I
Sbjct: 5 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHRII 56
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
G M +GGDF + +GT G+SIY KF DE+ LKH PG+LSM+ A +T GSQF I
Sbjct: 57 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 116
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD K+VVFG + +G I++ +E G G+ + + I +CG++
Sbjct: 117 KTKWLDGKHVVFGAVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 159 bits (401), Expect = 7e-39, Method: Composition-based stats.
Identities = 82/167 (49%), Positives = 111/167 (66%), Gaps = 8/167 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+++DG+P+ R+ FELF+D PKTAENFRAL TGEKG G YKGS FHR+I
Sbjct: 14 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHRII 65
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
G M +GGDF + +GT G+SIY KF DE+ LKH PG+LSM+ A +T GSQF I
Sbjct: 66 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 125
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD K+VVFG++ +G I++ +E G G+ + + I +CG++
Sbjct: 126 KTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 172
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 158 bits (400), Expect = 9e-39, Method: Composition-based stats.
Identities = 81/167 (48%), Positives = 111/167 (66%), Gaps = 8/167 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+++DG+P+ R+ FELF+D PKTAENFRAL TGEKG G YKGS FH++I
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHKII 57
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
G M +GGDF + +GT G+SIY KF DE+ LKH PG+LSM+ A +T GSQF I
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD K+VVFG++ +G I++ +E G G+ + + I +CG++
Sbjct: 118 KTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 158 bits (400), Expect = 9e-39, Method: Composition-based stats.
Identities = 81/167 (48%), Positives = 110/167 (65%), Gaps = 8/167 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+++DG+P+ R+ FELF+D PKTAENFRAL TGEKG G YKGS FHR+I
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHRII 57
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
G M +GGDF + +GT G+SIY KF DE+ LKH PG+LSM+ A +T GSQF I
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD +VVFG++ +G I++ +E G G+ + + I +CG++
Sbjct: 118 KTEWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 158 bits (399), Expect = 1e-38, Method: Composition-based stats.
Identities = 81/167 (48%), Positives = 110/167 (65%), Gaps = 8/167 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+++DG+P+ R+ FELF+D PKTAENFRAL TGEKG G YKGS FHR+I
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHRII 57
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
G M +GG+F +GT G+SIY KF DE+ LKH PG+LSM+ A +T GSQF I
Sbjct: 58 PGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD K+VVFG++ +G I++ +E G G+ + + I +CG++
Sbjct: 118 KTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 157 bits (398), Expect = 2e-38, Method: Composition-based stats.
Identities = 81/167 (48%), Positives = 110/167 (65%), Gaps = 8/167 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+++DG+P+ R+ FELF+D PKTAENFRAL TGEKG G YKGS FHR+I
Sbjct: 10 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHRII 61
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
G M +GGDF + +GT G+SIY KF DE+ LKH PG+LSM+ A +T GSQF I
Sbjct: 62 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 121
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD +VVFG++ +G I++ +E G G+ + + I +CG++
Sbjct: 122 KTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 168
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 157 bits (398), Expect = 2e-38, Method: Composition-based stats.
Identities = 81/167 (48%), Positives = 110/167 (65%), Gaps = 8/167 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+++DG+P+ R+ FELF+D PKTAENFRAL TGEKG G YKGS FHR+I
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHRII 57
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
G M +GGDF + +GT G+SIY KF DE+ LKH PG+LSM+ A +T GSQF I
Sbjct: 58 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD +VVFG++ +G I++ +E G G+ + + I +CG++
Sbjct: 118 KTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 157 bits (398), Expect = 2e-38, Method: Composition-based stats.
Identities = 81/167 (48%), Positives = 110/167 (65%), Gaps = 8/167 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+++DG+P+ R+ FELF+D PKTAENFRAL TGEKG G YKGS FHR+I
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHRII 57
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
G M +GG+F +GT G+SIY KF DE+ LKH PG+LSM+ A +T GSQF I
Sbjct: 58 PGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 117
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD K+VVFG++ +G I++ +E G G+ + + I +CG++
Sbjct: 118 KTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 157 bits (397), Expect = 2e-38, Method: Composition-based stats.
Identities = 81/167 (48%), Positives = 110/167 (65%), Gaps = 8/167 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+++DG+P+ R+ FELF+D PKTAENFRAL TGEKG G YKGS FHR+I
Sbjct: 5 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHRII 56
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
G M +GGDF +GT G+SIY KF DE+ LKH PG+LSM+ A +T GSQF I
Sbjct: 57 PGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 116
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD K+VVFG++ +G I++ ++ G G+ + + I +CG++
Sbjct: 117 KTEWLDGKHVVFGKVKEGMNIVEAMKRFGSRNGKTSKKITIADCGQL 163
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 157 bits (396), Expect = 3e-38, Method: Composition-based stats.
Identities = 82/165 (49%), Positives = 106/165 (64%), Gaps = 8/165 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D++ +G P+ + F+LF D+ PKTA NFRALCTGEKG G Y GS FHRVI
Sbjct: 4 VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG--------YAGSHFHRVI 55
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
M +GGDF +GT G+SIY KF DE+ +LKH++PGLLSM+ A +T GSQF IT
Sbjct: 56 PDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTV 115
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCG 173
LD K+VVFGE++ G ++K IE G G+ ++I CG
Sbjct: 116 VTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAKCG 160
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 107/169 (63%), Gaps = 4/169 (2%)
Query: 8 LVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRV 67
+VF DVSI G V RM ELF+D+ PKTAENFR CTGE + G P+ YKGS FHRV
Sbjct: 12 VVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEF---RKDGVPIGYKGSTFHRV 68
Query: 68 IKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITF 127
IK M +GGDFV DGT SIY G F DE+ +L+H PGLLSM+ + T G QF IT
Sbjct: 69 IKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITC 128
Query: 128 KANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEV 175
LD K+VVFG+++ G +++KIENV + + V I CGE+
Sbjct: 129 SKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 156 bits (394), Expect = 5e-38, Method: Composition-based stats.
Identities = 80/168 (47%), Positives = 111/168 (66%), Gaps = 8/168 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF ++SI+ P R+VF+L+ + PKTA+NFR L TG+ G G YK S FHRVI
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIFHRVI 56
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
M +GGDF + +GT G+SIY KF DE+ ++KH +PGLLSM+ A +T GSQF IT
Sbjct: 57 PQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 116
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVS 176
LD K+VVFGE+++G +I++K+E G G+ T+KI +CG V+
Sbjct: 117 PTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCGTVA 164
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 155 bits (391), Expect = 1e-37, Method: Composition-based stats.
Identities = 80/167 (47%), Positives = 110/167 (65%), Gaps = 8/167 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF ++SI+ P R+VF+L+ + PKTA+NFR L TG+ G G YK S FHRVI
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIFHRVI 57
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
M +GGDF + +GT G+SIY KF DE+ ++KH +PGLLSM+ A +T GSQF IT
Sbjct: 58 PQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 117
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD K+VVFGE+++G +I++K+E G G+ T+KI +CG V
Sbjct: 118 PTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCGTV 164
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 152 bits (384), Expect = 7e-37, Method: Composition-based stats.
Identities = 80/167 (47%), Positives = 108/167 (64%), Gaps = 8/167 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+++DG+P+ R+ FELF+D PKTAENFRAL TGEKG G YKGS FHR+I
Sbjct: 5 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHRII 56
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
G +GGDF + +GT G+SIY KF DE+ LKH PG+LS + A +T GSQF I
Sbjct: 57 PGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTA 116
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD K+VVFG++ +G I++ E G G+ + + I +CG++
Sbjct: 117 KTEWLDGKHVVFGKVKEGXNIVEAXERFGSRNGKTSKKITIADCGQL 163
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 106/167 (63%), Gaps = 8/167 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF D+ I R+V EL SDI P+TAENFRALCTGE+G G Y FHRVI
Sbjct: 13 VFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG--------YHNCCFHRVI 64
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
M +GGDFVK DGT G+SIY KF DE+ +L+H+ G+LSM+ + +T GSQF I
Sbjct: 65 PQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTT 124
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 175
LD K+VVFG +V G ++KK+E+VG + G++ V I CGE+
Sbjct: 125 KCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 171
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 149 bits (375), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 104/166 (62%), Gaps = 8/166 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
V+MD+ I P R+ L SD+ P TAENFR LCT EKG G +KGS FHR+I
Sbjct: 14 VYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSSFHRII 65
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
M +GGDF +GT G+SIY KF DE+ LKH PGLLSM+ + +T GSQF +T
Sbjct: 66 PQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCD 125
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGE 174
LD K+VVFGE+ +G ++L++IE G ++G+ V I +CGE
Sbjct: 126 KTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 171
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 104/166 (62%), Gaps = 8/166 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
V+MD+ I P R+ L SD+ P TAENFR LCT EKG G +KGS FHR+I
Sbjct: 6 VYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSSFHRII 57
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
M +GGDF +GT G+SIY KF DE+ LKH PGLLSM+ + +T GSQF +T
Sbjct: 58 PQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCD 117
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGE 174
LD K+VVFGE+ +G ++L++IE G ++G+ V I +CGE
Sbjct: 118 KTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 163
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 107/175 (61%), Gaps = 10/175 (5%)
Query: 1 MAKKKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYK 60
MAK+ S V+ DV + + + R+V +L DI PKTA+NFR LC KG G YK
Sbjct: 22 MAKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG--------YK 73
Query: 61 GSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLG 120
GS FHR+I G M +GGD+ +GT G SIY KFPDE+ LKH + G+LSM+ T G
Sbjct: 74 GSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNG 133
Query: 121 SQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLT--VTVKIINCG 173
SQF IT LD K+VVFGE+V+G +++ KI G E G++ ++I +CG
Sbjct: 134 SQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 188
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 112/177 (63%), Gaps = 9/177 (5%)
Query: 4 KKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSF 63
K ++ V+ D+ I + V R++F LF PKT +NF AL TGEKG G YK S
Sbjct: 13 KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSK 64
Query: 64 FHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQF 123
FHRVIK M +GGDF + DGT G+SIY +FPDE+ +LKH PG +SM+ A +DT GSQF
Sbjct: 65 FHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQF 124
Query: 124 IITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEVSEDK 179
IT LD K+VVFG++++G E+++K+E+ D + V I +CG++ +K
Sbjct: 125 FITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEK 181
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 112/177 (63%), Gaps = 9/177 (5%)
Query: 4 KKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSF 63
K ++ V+ D+ I + V R++F LF PKT +NF AL TGEKG G YK S
Sbjct: 3 KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSK 54
Query: 64 FHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQF 123
FHRVIK M +GGDF + DGT G+SIY +FPDE+ +LKH PG +SM+ A +DT GSQF
Sbjct: 55 FHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQF 114
Query: 124 IITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEVSEDK 179
IT LD K+VVFG++++G E+++K+E+ D + V I +CG++ +K
Sbjct: 115 FITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEK 171
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 110/177 (62%), Gaps = 9/177 (5%)
Query: 4 KKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSF 63
K ++ V+ D+ I + + R+V LF PKT +NF AL TGEKG G YK S
Sbjct: 10 KVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKDSK 61
Query: 64 FHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQF 123
FHRVIK M +GGDF + DGT G+SIY +FPDE+ +LKH PG +SM+ A +DT GSQF
Sbjct: 62 FHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQF 121
Query: 124 IITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEVSEDK 179
IT LD K+VVFG++++G E+++K+E D + V I +CG++ +K
Sbjct: 122 FITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEK 178
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 110/177 (62%), Gaps = 9/177 (5%)
Query: 4 KKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSF 63
K ++ V+ D+ I + + R+V LF PKT +NF AL TGEKG G YK S
Sbjct: 10 KVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKDSK 61
Query: 64 FHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQF 123
FHRVIK M +GGDF + DGT G+SIY +FPDE+ +LKH PG +SM+ A +DT GSQF
Sbjct: 62 FHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQF 121
Query: 124 IITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEVSEDK 179
IT LD K+VVFG++++G E+++K+E D + V I +CG++ +K
Sbjct: 122 FITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEK 178
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 137 bits (345), Expect = 2e-32, Method: Composition-based stats.
Identities = 81/168 (48%), Positives = 98/168 (58%), Gaps = 9/168 (5%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF DV I V R+V LF ++ PKT ENF AL TGEKG G YKGS FHRVI
Sbjct: 10 VFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG--------YKGSIFHRVI 61
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
K M +GGDF RDGT G SIY FPDE+ +LKH G +SM+ A DT GSQF IT
Sbjct: 62 KDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 121
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIE-NVGDEEGRLTVTVKIINCGEV 175
LD K+VVFG+++ G ++ IE D R I+N G++
Sbjct: 122 KPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKI 169
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 135 bits (341), Expect = 7e-32, Method: Composition-based stats.
Identities = 74/172 (43%), Positives = 105/172 (61%), Gaps = 7/172 (4%)
Query: 8 LVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRV 67
+VFMD+++ + + + FELF +I PKT+ENFR CTGE + P+ YK + FHRV
Sbjct: 61 VVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV---NNLPVGYKNTIFHRV 117
Query: 68 IKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITF 127
IK M +GGDF+ +G+ SIY KF DE+ +KHD+ GLLSM+ + +T G QF IT
Sbjct: 118 IKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITT 177
Query: 128 KANHSLDRKYVVFGELVQGHE--ILKKIENVGDEE--GRLTVTVKIINCGEV 175
K LD K VVFG ++ +LKKIENV + + + ++ CGE+
Sbjct: 178 KKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 134 bits (337), Expect = 2e-31, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 101/166 (60%), Gaps = 8/166 (4%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
V+ D+ I P R+ L SD+ P TAENFR LCT EKG G +KGS FHR+I
Sbjct: 15 VYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG--------FKGSSFHRII 66
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
+GGDF +GT G+SIY KF DE+ LKH PGLLS + + +T GSQF +T
Sbjct: 67 PQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLTCD 126
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGE 174
LD K+VVFGE+ +G ++L++IE G ++G+ V I +CGE
Sbjct: 127 KTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 172
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/168 (47%), Positives = 95/168 (56%), Gaps = 9/168 (5%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
VF DV I V R+V LF + PKT ENF AL TGEKG G YKGS FHRVI
Sbjct: 18 VFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG--------YKGSKFHRVI 69
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
K M +GGD DGT G SIY FPDE+ +LKH G +SM+ A DT GSQF IT
Sbjct: 70 KDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 129
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIE-NVGDEEGRLTVTVKIINCGEV 175
LD K+VVFG+++ G ++ IE D R IIN G++
Sbjct: 130 KPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKI 177
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 127 bits (319), Expect = 3e-29, Method: Composition-based stats.
Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 16/169 (9%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
V+ D++I +PV R+V LF + PKT ENF+ L +GE G G YKGS FHRVI
Sbjct: 8 VYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG--------YKGSIFHRVI 59
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
+ M +GGDF DGT G+SIY +F DE+ ++KH G +SM+ A ++ GSQF +T
Sbjct: 60 RNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKH-FVGAVSMANAGPNSNGSQFFVTTA 118
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIEN----VGDEEGRLTVTVKIINCG 173
LD ++VVFG++V+G +++KK+EN + D+ + VKI +CG
Sbjct: 119 PTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKK---AVKINDCG 164
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 127 bits (318), Expect = 3e-29, Method: Composition-based stats.
Identities = 76/168 (45%), Positives = 99/168 (58%), Gaps = 10/168 (5%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
V+ DV ID +P+ R+ LF AP T ENFR LCTGE G G YK S FHRVI
Sbjct: 14 VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFHRVI 65
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
+ M +GGDF DGT G+SIY KF DE+ +KH G LSM+ A +T GSQF IT
Sbjct: 66 QNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFITTA 124
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVG-DEEGRLTVTVKIINCGEV 175
LD ++VVFG+++ G +++ +IE + R VKI+ GE+
Sbjct: 125 PTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 127 bits (318), Expect = 3e-29, Method: Composition-based stats.
Identities = 76/168 (45%), Positives = 98/168 (58%), Gaps = 10/168 (5%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
V+ DV ID +P+ R+ LF AP T ENFR LCTGE G G YK S FHRVI
Sbjct: 14 VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFHRVI 65
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
+ M +GGDF DGT G+SIY KF DE+ +KH G LSM+ A +T GSQF IT
Sbjct: 66 QNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFITTA 124
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIENVG-DEEGRLTVTVKIINCGEV 175
LD +VVFG+++ G +++ +IE + R VKI+ GE+
Sbjct: 125 PTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 95/160 (59%), Gaps = 12/160 (7%)
Query: 20 VERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFV 79
V R+VF LF PKTA+NFR LC G G Y+ S FHR+I M +GGDF
Sbjct: 21 VGRIVFNLFDKDVPKTAKNFRELCKRPAGEG--------YRESTFHRIIPNFMIQGGDFT 72
Query: 80 KRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVV 139
+ +GT G SIY KF DE+ KHD+ G+LSM+ A +T GSQF IT LD K+VV
Sbjct: 73 RGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVV 132
Query: 140 FGELV--QGHEILKKIENVGDEEG--RLTVTVKIINCGEV 175
FGE+ + + ++K+IE +G G R KI+NCGE+
Sbjct: 133 FGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 88/147 (59%), Gaps = 8/147 (5%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVI 68
V+ D+ I G P+ R+V LF PKTA NF L KG G Y GS FHRVI
Sbjct: 9 VYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG--------YPGSKFHRVI 60
Query: 69 KGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFK 128
M +GGDF + DGT G SIY KF DE+ +LKH G LSM+ A DT GSQF IT
Sbjct: 61 ADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTV 120
Query: 129 ANHSLDRKYVVFGELVQGHEILKKIEN 155
LD ++VVFG++++G ++++KIE
Sbjct: 121 KTPWLDGRHVVFGKILEGMDVVRKIEQ 147
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 75/132 (56%), Gaps = 13/132 (9%)
Query: 26 ELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTS 85
+LF PKT ENF C + R G +Y G FHR+IKG M + GD G
Sbjct: 36 KLFPVECPKTVENF---C-----VHSRNG---YYNGHTFHRIIKGFMIQTGD-PTGTGMG 83
Query: 86 GESIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELV 144
GESI+ G+F DE L+HDRP LSM+ A +T GSQF IT LD K+ VFG +
Sbjct: 84 GESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVT 143
Query: 145 QGHEILKKIENV 156
+G E++++I NV
Sbjct: 144 KGMEVVQRISNV 155
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 92.0 bits (227), Expect = 1e-18, Method: Composition-based stats.
Identities = 59/147 (40%), Positives = 79/147 (53%), Gaps = 14/147 (9%)
Query: 11 MDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKG 70
M V++ D V + E+F + PKT ENF ALC +Y G FHR IKG
Sbjct: 1 MSVTLHTD-VGDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKG 48
Query: 71 SMAEGGDFVKRDGTSGESIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKA 129
M + GD G G SI+ KF DE S LKH+ G++SM+ +T GSQF IT+
Sbjct: 49 FMVQTGDPTG-TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGK 107
Query: 130 NHSLDRKYVVFGELVQGHEILKKIENV 156
LD KY VFG+++ G E L ++E +
Sbjct: 108 QPHLDMKYTVFGKVIDGLETLDELEKL 134
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 90.9 bits (224), Expect = 3e-18, Method: Composition-based stats.
Identities = 59/147 (40%), Positives = 79/147 (53%), Gaps = 14/147 (9%)
Query: 11 MDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKG 70
M V++ D V + E+F + PKT ENF ALC +Y G FHR IKG
Sbjct: 7 MSVTLHTD-VGDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKG 54
Query: 71 SMAEGGDFVKRDGTSGESIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKA 129
M + GD G G SI+ KF DE S LKH+ G++SM+ +T GSQF IT+
Sbjct: 55 FMVQTGDPTG-TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGK 113
Query: 130 NHSLDRKYVVFGELVQGHEILKKIENV 156
LD KY VFG+++ G E L ++E +
Sbjct: 114 QPHLDMKYTVFGKVIDGLETLDELEKL 140
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 85.9 bits (211), Expect = 8e-17, Method: Composition-based stats.
Identities = 56/136 (41%), Positives = 74/136 (54%), Gaps = 17/136 (12%)
Query: 25 FELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGT 84
FELF PK +NF AL +YK + FH+ IKG + +GGD G
Sbjct: 30 FELFCSQCPKACKNFLALSASG-----------YYKNTIFHKNIKGFIIQGGDPTG-TGK 77
Query: 85 SGESIYEGKFPDE-SPRLKHDRPGLLSMSIADR----DTLGSQFIITFKANHSLDRKYVV 139
GESIY F DE P LK+DR G+LSM+ +T GSQF IT+ + L+ +YV+
Sbjct: 78 GGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVI 137
Query: 140 FGELVQGHEILKKIEN 155
FG+L+ G E L +EN
Sbjct: 138 FGKLIDGFETLNTLEN 153
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 58/150 (38%), Positives = 79/150 (52%), Gaps = 14/150 (9%)
Query: 23 MVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRD 82
+V EL+ APKT +NF L R G +Y G+ FHR+IK M +GGD
Sbjct: 23 IVLELYWKHAPKTCKNFAELA--------RRG---YYNGTKFHRIIKDFMIQGGDPTG-T 70
Query: 83 GTSGESIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFG 141
G G SIY +F DE P LK G+L+M+ A DT GSQF +T LD K+ +FG
Sbjct: 71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130
Query: 142 ELVQGHEILKKIENV-GDEEGRLTVTVKII 170
+ QG ++ ++ V + + R VKII
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 80.5 bits (197), Expect = 4e-15, Method: Composition-based stats.
Identities = 58/150 (38%), Positives = 79/150 (52%), Gaps = 14/150 (9%)
Query: 23 MVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRD 82
+V EL+ APKT +NF L R G +Y G+ FHR+IK M +GGD
Sbjct: 23 IVLELYWKHAPKTCKNFAELA--------RRG---YYNGTKFHRIIKDFMIQGGDPTG-T 70
Query: 83 GTSGESIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFG 141
G G SIY +F DE P LK G+L+M+ A DT GSQF +T LD K+ +FG
Sbjct: 71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130
Query: 142 ELVQGHEILKKIENV-GDEEGRLTVTVKII 170
+ QG ++ ++ V + + R VKII
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 80.1 bits (196), Expect = 4e-15, Method: Composition-based stats.
Identities = 58/150 (38%), Positives = 79/150 (52%), Gaps = 14/150 (9%)
Query: 23 MVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRD 82
+V EL+ APKT +NF L R G +Y G+ FHR+IK M +GGD
Sbjct: 23 IVLELYWKHAPKTCKNFAELA--------RRG---YYNGTKFHRIIKDFMIQGGDPTG-T 70
Query: 83 GTSGESIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFG 141
G G SIY +F DE P LK G+L+M+ A DT GSQF +T LD K+ +FG
Sbjct: 71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130
Query: 142 ELVQGHEILKKIENV-GDEEGRLTVTVKII 170
+ QG ++ ++ V + + R VKII
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 74/133 (55%), Gaps = 13/133 (9%)
Query: 25 FELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGT 84
EL D+ PKT ENF LC K +Y G+ FHR I+ + +GGD GT
Sbjct: 33 LELHCDLTPKTCENFIRLC-----------KKHYYDGTIFHRSIRNFVIQGGD-PTGTGT 80
Query: 85 SGESIYEGKFPDES-PRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGEL 143
GES + F DE P L H G+LSM+ + ++ SQF ITF++ LD+K+ +FG +
Sbjct: 81 GGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRV 140
Query: 144 VQGHEILKKIENV 156
V G ++L +ENV
Sbjct: 141 VGGFDVLTAMENV 153
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Query: 58 HYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDES-PRLKHDRPGLLSMSIADR 116
+Y FHRVIK M + GD DGT GESI+ +F DE L H +P ++SM+
Sbjct: 41 YYNNCIFHRVIKHFMVQTGD-PSGDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGP 99
Query: 117 DTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIIN 171
+T GSQF IT LD K+ VFG++ QG +I+ IE V D+ + +KI+N
Sbjct: 100 NTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN 155
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 73.6 bits (179), Expect = 5e-13, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Query: 27 LFSDIAPKTAENFRALCTGEKGIGPR--TGKPL--HYKGSFFHRVIKGSMAEGGDFVKRD 82
LF + APKT NF L G K + +G P Y G+ FHRVI+G M +GGD
Sbjct: 39 LFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTG 98
Query: 83 GTSGESIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFG 141
KF DE P L+ D+P LL+M+ A T GSQF IT L+R++ +FG
Sbjct: 99 RGGPGY----KFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFG 154
Query: 142 ELV 144
E++
Sbjct: 155 EVI 157
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 61/120 (50%), Gaps = 13/120 (10%)
Query: 26 ELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTS 85
EL+S APK NF LC +Y + FHRV+ G + +GGD G+
Sbjct: 39 ELWSKEAPKACRNFIQLCL-----------EAYYDNTIFHRVVPGFIVQGGD-PTGTGSG 86
Query: 86 GESIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELV 144
GESIY F DE RL+ +R GL++M+ A GSQF T L+ K+ +FG++
Sbjct: 87 GESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT 146
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/132 (36%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 26 ELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTS 85
EL+ +PKT NF LC E G Y + FHRVI + +GGD G
Sbjct: 53 ELYWYHSPKTCLNFYTLC--EMGF---------YDNTIFHRVIPNFVIQGGDPTG-TGKG 100
Query: 86 GESIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELV 144
G+SIY F DE + LKH G+LSMS +T SQF IT LD K+ +F +
Sbjct: 101 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVS 160
Query: 145 QGHEILKKIENV 156
+ ++ I +V
Sbjct: 161 KNMTCIENIASV 172
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 23/143 (16%)
Query: 26 ELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTS 85
EL +D+AP+ ++F LC + ++ + FHR I+ M +GG R +
Sbjct: 21 ELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGGRAELRQPSK 69
Query: 86 GESIYEGK-----FPDESP-------RLKHDRPGLLSMSIADRDTLGSQFIITFKANHSL 133
+ + + FP +P RL H G+LSM+ + + S+F ITFK+ L
Sbjct: 70 KKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHL 129
Query: 134 DRKYVVFGELVQGHEILKKIENV 156
+ K+ +FG +V G ++L++ E +
Sbjct: 130 NNKHTIFGRVVGGLDVLRQWEKL 152
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 21/143 (14%)
Query: 23 MVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRD 82
+ +LF+D AP+TA NF K HY G+ FHRVI G M +GG F
Sbjct: 11 ITLKLFADKAPETAANFEQYV-----------KDGHYDGTIFHRVIDGFMIQGGGF--EP 57
Query: 83 GTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRK------ 136
G +S + + L + + + D + +QF I K N LD
Sbjct: 58 GMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFLDHTAPTAHG 117
Query: 137 --YVVFGELVQGHEILKKIENVG 157
Y VFGE+V+G +++ +I++V
Sbjct: 118 WGYAVFGEVVEGTDVVDRIKSVA 140
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 84/191 (43%), Gaps = 29/191 (15%)
Query: 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGE--KGIGPRTGKPLH-------Y 59
V+MD+ ++ + + R+ +LF D P ENF L G+ + TGK + Y
Sbjct: 17 VYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTY 76
Query: 60 KGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGK-----FPDESPRLKHDRPGLLSMSIA 114
+G FH V+ + GD +G+S ++Y + F D H+ GLLS+ +
Sbjct: 77 EGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYF--YPHESKGLLSL-VP 133
Query: 115 DRDTLG-----SQFIITF------KANHSLDRKYVVFGELVQGHEILKKIEN-VGDEEGR 162
D G S F+IT LDR VV G++ G ++L KI + + GR
Sbjct: 134 YTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGR 193
Query: 163 LTVTVKIINCG 173
T I CG
Sbjct: 194 KYPTFSIGKCG 204
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 64/143 (44%), Gaps = 27/143 (18%)
Query: 25 FELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDF---VKR 81
EL APKT ENF L +KG HY G+ FHRVI G M +GG F +K+
Sbjct: 17 LELDEAKAPKTVENF--LNYVKKG---------HYDGTIFHRVINGFMIQGGGFEPGLKQ 65
Query: 82 DGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRK----- 136
T E + LK+D + D + +QF I N L+
Sbjct: 66 KPTDAPIANEA-----NNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQ 120
Query: 137 ---YVVFGELVQGHEILKKIENV 156
Y VFG++V+G +I+ KI+ V
Sbjct: 121 GWGYAVFGKVVEGQDIVDKIKAV 143
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 21/143 (14%)
Query: 23 MVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRD 82
+V + F D AP+T +NF C R G Y + FHRVI G M +GG F
Sbjct: 11 IVIKTFDDKAPETVKNFLDYC--------REG---FYNNTIFHRVINGFMIQGGGF--EP 57
Query: 83 GTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRK------ 136
G ++ E + + LK+ R L + +QF I N L+
Sbjct: 58 GMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQG 117
Query: 137 --YVVFGELVQGHEILKKIENVG 157
Y VF E+V G +++ KI+ V
Sbjct: 118 WGYCVFAEVVDGMDVVDKIKGVA 140
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 21/143 (14%)
Query: 23 MVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRD 82
+V + F D AP+T +NF C R G Y + FHRVI G M +GG F
Sbjct: 11 IVIKTFDDKAPETVKNFLDYC--------REG---FYNNTIFHRVINGFMIQGGGF--EP 57
Query: 83 GTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRK------ 136
G ++ E + + LK+ R L + +QF I N L+
Sbjct: 58 GMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQG 117
Query: 137 --YVVFGELVQGHEILKKIENVG 157
Y VF E+V G + + KI+ V
Sbjct: 118 WGYCVFAEVVDGMDEVDKIKGVA 140
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 19/109 (17%)
Query: 59 YKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDESPR------LKHDRPGLLSMS 112
Y + FHRVI G M +GG F ++ + K P+ + L++ R +
Sbjct: 41 YNNTTFHRVIPGFMIQGGGFTEQ--------MQQKKPNPPIKNEADNGLRNTRGTIAMAR 92
Query: 113 IADRDTLGSQFIITFKANHSLDR-----KYVVFGELVQGHEILKKIENV 156
AD+D+ SQF I N LD Y VFG++V+G ++ KI V
Sbjct: 93 TADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQV 141
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 19/109 (17%)
Query: 59 YKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDESPR------LKHDRPGLLSMS 112
Y + FHRVI G M +GG F ++ + K P+ + L++ R +
Sbjct: 41 YNNTTFHRVIPGFMIQGGGFTEQ--------MQQKKPNPPIKNEADNGLRNTRGTIAMAR 92
Query: 113 IADRDTLGSQFIITFKANHSLDR-----KYVVFGELVQGHEILKKIENV 156
AD+D+ SQF I N LD Y VFG++V+G ++ KI V
Sbjct: 93 TADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQV 141
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 32/159 (20%)
Query: 26 ELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTS 85
EL++ P NF LC +Y + FHRV+K + +GGD
Sbjct: 36 ELWARECPLACRNFVQLCLEG-----------YYVNTIFHRVVKDFIVQGGDPTGTGRGG 84
Query: 86 GESIYEGK-FPDES-PRLKHDRPGLLSMSIADRD--------------TLGSQFIITFKA 129
++ ++GK F E+ PRLK GL+ ++ R T G+QF IT
Sbjct: 85 ADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLAR 144
Query: 130 NHSLDRKYVVFGELVQGHEILKKIE----NVGDEEGRLT 164
L+ Y +FG+ V GH + ++ VG E+ +T
Sbjct: 145 ADVLNNAYTLFGK-VTGHTLYNLMKFNDLEVGKEDRPMT 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,114,327
Number of Sequences: 62578
Number of extensions: 356104
Number of successful extensions: 717
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 75
length of query: 801
length of database: 14,973,337
effective HSP length: 107
effective length of query: 694
effective length of database: 8,277,491
effective search space: 5744578754
effective search space used: 5744578754
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)