Query 003712
Match_columns 801
No_of_seqs 309 out of 1522
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:34:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 5.4E-57 1.2E-61 479.5 19.5 177 4-180 6-183 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 1.3E-47 2.9E-52 377.0 17.0 166 7-180 40-207 (217)
3 KOG0879 U-snRNP-associated cyc 100.0 7.7E-47 1.7E-51 350.3 12.6 169 4-175 8-177 (177)
4 PTZ00221 cyclophilin; Provisio 100.0 1.2E-42 2.6E-47 362.7 22.3 178 3-184 49-228 (249)
5 KOG0111 Cyclophilin-type pepti 100.0 7.9E-44 1.7E-48 354.1 10.8 166 3-176 133-298 (298)
6 PTZ00060 cyclophilin; Provisio 100.0 2.8E-41 6.1E-46 340.7 20.9 170 5-176 14-183 (183)
7 PLN03149 peptidyl-prolyl isome 100.0 4.7E-41 1E-45 339.7 19.9 169 4-175 16-186 (186)
8 cd01926 cyclophilin_ABH_like c 100.0 8.9E-41 1.9E-45 331.6 19.8 164 7-173 1-164 (164)
9 KOG0881 Cyclophilin type pepti 100.0 7.9E-41 1.7E-45 307.1 9.7 154 4-174 7-162 (164)
10 KOG0883 Cyclophilin type, U bo 100.0 2.8E-39 6.1E-44 342.8 10.2 164 4-184 275-440 (518)
11 cd01923 cyclophilin_RING cyclo 100.0 8.9E-38 1.9E-42 308.7 19.1 156 8-180 1-158 (159)
12 KOG0885 Peptidyl-prolyl cis-tr 100.0 1.9E-38 4E-43 336.0 13.5 158 6-181 12-173 (439)
13 COG0652 PpiB Peptidyl-prolyl c 100.0 1.3E-37 2.8E-42 304.4 16.5 148 9-175 2-157 (158)
14 cd01928 Cyclophilin_PPIL3_like 100.0 7.7E-37 1.7E-41 300.2 18.1 148 9-173 3-152 (153)
15 cd01927 cyclophilin_WD40 cyclo 100.0 1.5E-36 3.2E-41 296.7 17.2 144 11-171 2-147 (148)
16 cd01921 cyclophilin_RRM cyclop 100.0 2E-36 4.4E-41 301.0 18.4 153 11-180 2-164 (166)
17 KOG0865 Cyclophilin type pepti 100.0 3.6E-37 7.8E-42 303.4 10.0 163 5-175 2-167 (167)
18 cd01922 cyclophilin_SpCYP2_lik 100.0 9.4E-36 2E-40 290.3 17.4 143 11-170 2-145 (146)
19 KOG0884 Similar to cyclophilin 100.0 2.4E-36 5.2E-41 276.1 11.6 152 9-177 3-157 (161)
20 cd01925 cyclophilin_CeCYP16-li 100.0 2.1E-35 4.7E-40 295.0 19.5 160 5-181 4-166 (171)
21 KOG0882 Cyclophilin-related pe 100.0 2.8E-36 6E-41 325.8 12.4 152 6-174 404-557 (558)
22 PRK10903 peptidyl-prolyl cis-t 100.0 3.6E-34 7.8E-39 290.4 19.1 153 4-175 26-189 (190)
23 PRK10791 peptidyl-prolyl cis-t 100.0 1.4E-33 3E-38 280.1 18.4 148 9-175 2-163 (164)
24 KOG0415 Predicted peptidyl pro 100.0 3.4E-33 7.5E-38 293.6 15.4 160 9-185 3-172 (479)
25 cd01920 cyclophilin_EcCYP_like 100.0 9.2E-33 2E-37 271.9 16.5 142 11-171 2-154 (155)
26 PF00160 Pro_isomerase: Cyclop 100.0 3.1E-32 6.6E-37 267.1 17.4 150 10-174 1-155 (155)
27 cd00317 cyclophilin cyclophili 100.0 6E-32 1.3E-36 262.6 17.0 143 10-170 1-145 (146)
28 cd01924 cyclophilin_TLP40_like 100.0 6.1E-31 1.3E-35 263.9 15.1 125 20-155 6-164 (176)
29 KOG0882 Cyclophilin-related pe 97.6 6.5E-05 1.4E-09 83.8 5.3 152 11-175 103-262 (558)
30 TIGR03268 methan_mark_3 putati 96.9 0.0036 7.8E-08 71.5 9.8 113 22-155 376-495 (503)
31 PRK00969 hypothetical protein; 96.5 0.0095 2.1E-07 68.4 9.5 113 22-155 379-497 (508)
32 PF12903 DUF3830: Protein of u 96.4 0.01 2.2E-07 58.2 7.3 107 22-156 9-131 (147)
33 TIGR03268 methan_mark_3 putati 95.9 0.024 5.1E-07 65.0 8.1 107 17-155 197-303 (503)
34 PRK00969 hypothetical protein; 95.8 0.023 4.9E-07 65.4 7.7 106 17-154 200-305 (508)
35 COG4070 Predicted peptidyl-pro 95.2 0.048 1E-06 60.6 7.5 112 23-155 378-498 (512)
36 COG4070 Predicted peptidyl-pro 95.2 0.053 1.2E-06 60.2 7.8 107 16-154 198-304 (512)
37 KOG2140 Uncharacterized conser 93.1 0.00011 2.4E-09 83.3 -18.6 24 23-46 476-499 (739)
38 PF04126 Cyclophil_like: Cyclo 91.1 0.54 1.2E-05 44.9 6.3 103 11-155 3-113 (120)
39 KOG3116 Predicted C3H1-type Zn 91.0 0.3 6.6E-06 47.7 4.5 10 138-147 22-31 (177)
40 KOG2985 Uncharacterized conser 90.6 0.1 2.2E-06 54.9 0.9 28 202-229 169-196 (306)
41 KOG0526 Nucleosome-binding fac 89.8 3.7 8.1E-05 47.9 12.4 30 101-130 371-403 (615)
42 KOG4207 Predicted splicing fac 87.5 3.8 8.3E-05 42.6 9.5 12 779-790 244-255 (256)
43 PHA03001 putative virion core 86.2 2 4.4E-05 41.2 6.3 52 7-71 4-61 (132)
44 KOG0546 HSP90 co-chaperone CPR 84.9 0.25 5.3E-06 54.9 -0.4 112 35-152 69-181 (372)
45 PF06138 Chordopox_E11: Chordo 82.3 3.3 7.1E-05 39.8 5.9 52 7-71 4-62 (130)
46 KOG4368 Predicted RNA binding 79.0 3.3 7.1E-05 48.6 5.6 12 56-67 219-230 (757)
47 PF10500 SR-25: Nuclear RNA-sp 73.9 2.3 5.1E-05 44.5 2.5 6 256-261 84-89 (225)
48 KOG0885 Peptidyl-prolyl cis-tr 62.5 1.2 2.6E-05 49.6 -2.4 46 12-67 42-87 (439)
49 KOG0111 Cyclophilin-type pepti 58.6 4.6 0.0001 42.3 1.1 101 38-149 192-297 (298)
50 KOG1832 HIV-1 Vpr-binding prot 57.6 9.3 0.0002 47.2 3.5 34 116-149 1274-1321(1516)
51 KOG2548 SWAP mRNA splicing reg 54.0 19 0.00041 42.2 5.0 7 37-43 38-44 (653)
52 COG2164 Uncharacterized conser 53.1 15 0.00033 34.2 3.4 19 137-155 99-117 (126)
53 KOG2740 Clathrin-associated pr 51.0 4.5 9.7E-05 45.2 -0.4 143 29-180 73-245 (418)
54 KOG3953 SOCS box protein SSB-1 50.0 36 0.00078 36.2 6.0 34 10-43 72-106 (242)
55 PF07174 FAP: Fibronectin-atta 48.8 24 0.00052 38.2 4.6 93 19-126 165-261 (297)
56 KOG2236 Uncharacterized conser 38.6 55 0.0012 38.0 5.7 11 59-69 16-26 (483)
57 KOG2138 Predicted RNA binding 37.6 13 0.00029 44.8 0.6 13 132-144 679-691 (883)
58 PF14283 DUF4366: Domain of un 37.1 85 0.0018 33.2 6.5 37 118-156 81-117 (218)
59 COG5406 Nucleosome binding fac 34.6 36 0.00079 40.8 3.5 17 26-46 693-709 (1001)
60 KOG3064 RNA-binding nuclear pr 31.6 20 0.00043 38.5 0.8 8 121-128 116-123 (303)
61 COG4925 Uncharacterized conser 31.4 1.6E+02 0.0035 29.0 6.7 29 120-152 127-155 (166)
62 KOG0883 Cyclophilin type, U bo 30.4 21 0.00045 40.5 0.7 71 35-109 322-398 (518)
63 COG5226 CEG1 mRNA capping enzy 28.7 1.8E+02 0.0039 32.4 7.3 32 98-129 213-259 (404)
64 COG0117 RibD Pyrimidine deamin 28.5 20 0.00043 35.5 0.1 28 108-135 56-83 (146)
65 KOG0526 Nucleosome-binding fac 27.6 33 0.00071 40.5 1.6 8 35-42 179-186 (615)
66 PF02505 MCR_D: Methyl-coenzym 27.3 4.4E+02 0.0095 26.5 9.0 88 23-156 1-94 (153)
67 KOG0670 U4/U6-associated splic 26.2 41 0.00089 40.0 2.1 52 28-79 589-640 (752)
68 KOG3087 Serine/threonine prote 26.1 25 0.00054 36.8 0.3 31 6-43 74-105 (229)
69 KOG3938 RGS-GAIP interacting p 25.9 90 0.0019 34.0 4.4 25 4-30 49-74 (334)
70 KOG3262 H/ACA small nucleolar 24.8 60 0.0013 33.4 2.7 13 35-47 55-67 (215)
71 PF05913 DUF871: Bacterial pro 24.3 40 0.00086 38.3 1.5 51 104-155 298-349 (357)
72 PF11314 DUF3117: Protein of u 24.3 78 0.0017 25.6 2.7 26 7-34 17-42 (51)
73 KOG0879 U-snRNP-associated cyc 24.0 34 0.00074 33.4 0.8 59 36-97 69-127 (177)
74 KOG0956 PHD finger protein AF1 23.9 1.2E+02 0.0026 37.0 5.3 9 4-12 18-26 (900)
75 PF12580 TPPII: Tripeptidyl pe 22.9 45 0.00097 34.7 1.5 90 58-156 41-134 (194)
76 PF10278 Med19: Mediator of RN 21.8 41 0.00089 34.5 0.9 7 139-145 74-80 (178)
77 KOG3794 CBF1-interacting corep 20.8 25 0.00054 39.8 -0.9 9 37-45 101-109 (453)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-57 Score=479.48 Aligned_cols=177 Identities=57% Similarity=0.908 Sum_probs=171.8
Q ss_pred CCCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCC
Q 003712 4 KKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDG 83 (801)
Q Consensus 4 ~~np~V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g 83 (801)
..||+|||||+||++++||||||||.|+||+||+||++||+|++|.+..||++++|+|+.||||||+||||||||+++||
T Consensus 6 ~~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnG 85 (372)
T KOG0546|consen 6 RTNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNG 85 (372)
T ss_pred CCCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCC
Confidence 35899999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCCC
Q 003712 84 TSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGR 162 (801)
Q Consensus 84 ~gg~si~g~~f~dE~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~-~d~~g~ 162 (801)
+||++|||.+|.||+|.|+|+.+|||+|||.|+|+||||||||+.++|||||+|||||+||.|++||..|+++ ++.+++
T Consensus 86 tGGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~sk 165 (372)
T KOG0546|consen 86 TGGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESK 165 (372)
T ss_pred CCcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 888889
Q ss_pred ccccEEEEEeeecccccc
Q 003712 163 LTVTVKIINCGEVSEDKK 180 (801)
Q Consensus 163 P~~~I~I~~cg~l~~~~k 180 (801)
|+.+|.|.+||||+...+
T Consensus 166 P~~dV~I~dCGel~~~~~ 183 (372)
T KOG0546|consen 166 PLADVVISDCGELVKKSK 183 (372)
T ss_pred CccceEeccccccccccc
Confidence 999999999999975544
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-47 Score=377.04 Aligned_cols=166 Identities=55% Similarity=0.870 Sum_probs=160.8
Q ss_pred cEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhc-cCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCC
Q 003712 7 LLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCT-GEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTS 85 (801)
Q Consensus 7 p~V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~-G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~g 85 (801)
-+||||+.+|++++|+|+|+||.+.+|+||+||.+||+ +++|.| |.|+.||||+++|||||||++.++|.|
T Consensus 40 ~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g--------Y~gS~FhRVi~nfmIQGGd~t~g~gtG 111 (217)
T KOG0880|consen 40 HKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG--------YKGSKFHRVIPNFMIQGGDFTKGDGTG 111 (217)
T ss_pred eEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc--------cCCceeeeeecCceeecCccccCCCCC
Confidence 47999999999999999999999999999999999999 888877 999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCCCcc
Q 003712 86 GESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLT 164 (801)
Q Consensus 86 g~si~g~~f~dE~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~-~d~~g~P~ 164 (801)
|.+|||.+|+||||.|+|+.+|.|+|||.|+|+||+|||||+...+||||+|||||+|++||+||.+|+.+ ++.+++|+
T Consensus 112 g~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~ 191 (217)
T KOG0880|consen 112 GKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPL 191 (217)
T ss_pred CeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccEEEEEeeecccccc
Q 003712 165 VTVKIINCGEVSEDKK 180 (801)
Q Consensus 165 ~~I~I~~cg~l~~~~k 180 (801)
+.|+|++||+|.....
T Consensus 192 e~v~I~~~g~l~~~~~ 207 (217)
T KOG0880|consen 192 EDVVIANCGELPVEYL 207 (217)
T ss_pred ccEEEeecCcccccch
Confidence 9999999999976543
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-47 Score=350.31 Aligned_cols=169 Identities=52% Similarity=0.849 Sum_probs=162.8
Q ss_pred CCCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCC
Q 003712 4 KKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDG 83 (801)
Q Consensus 4 ~~np~V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g 83 (801)
..||+||||+++|+.++|+|+||||+|++|+|++||.++|+|+. ...|++.-|++++|||||++||||||||.+++|
T Consensus 8 ~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~---r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDG 84 (177)
T KOG0879|consen 8 PNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEY---RKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDG 84 (177)
T ss_pred CCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhccccc---ccCCccccccccchHHHhhhheeccCceecCCC
Confidence 35999999999999999999999999999999999999999986 355788899999999999999999999999999
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCCC
Q 003712 84 TSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGR 162 (801)
Q Consensus 84 ~gg~si~g~~f~dE~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~-~d~~g~ 162 (801)
+|..+||+.+|.||||.|+|+.+|+|+|||.|+++||.|||||+..+.+||++|+|||+|++||.|+.+||++ +..+++
T Consensus 85 tG~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~Nnk 164 (177)
T KOG0879|consen 85 TGVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNK 164 (177)
T ss_pred ceEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 889999
Q ss_pred ccccEEEEEeeec
Q 003712 163 LTVTVKIINCGEV 175 (801)
Q Consensus 163 P~~~I~I~~cg~l 175 (801)
|.-+|.|+.||++
T Consensus 165 PKl~v~i~qCGem 177 (177)
T KOG0879|consen 165 PKLPVVIVQCGEM 177 (177)
T ss_pred CCCcEEEeecccC
Confidence 9999999999974
No 4
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=1.2e-42 Score=362.67 Aligned_cols=178 Identities=37% Similarity=0.528 Sum_probs=163.8
Q ss_pred CCCCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecC-ceeeeCcCcCC
Q 003712 3 KKKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKG-SMAEGGDFVKR 81 (801)
Q Consensus 3 ~~~np~V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kg-f~iQgGd~~~~ 81 (801)
...+++|||||++|+.++|+|+||||.++||+||+||+.||+|++|++..+|...+|+|+.||+|+++ ||||+||+..
T Consensus 49 ~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~- 127 (249)
T PTZ00221 49 EQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS- 127 (249)
T ss_pred CCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC-
Confidence 45689999999999999999999999999999999999999999998877888888999999999985 8999999863
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCC
Q 003712 82 DGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEE 160 (801)
Q Consensus 82 ~g~gg~si~g~~f~dE~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~-~d~~ 160 (801)
.+.++||..|.+|++.++|+.+|+|+||+.++++||+||||||.++++||++|+|||+||+||+||++|+.+ ++.+
T Consensus 128 ---~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~ 204 (249)
T PTZ00221 128 ---FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDV 204 (249)
T ss_pred ---CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCC
Confidence 356788999999999999999999999999999999999999999999999999999999999999999988 6788
Q ss_pred CCccccEEEEEeeecccccccccc
Q 003712 161 GRLTVTVKIINCGEVSEDKKKGNK 184 (801)
Q Consensus 161 g~P~~~I~I~~cg~l~~~~kk~~k 184 (801)
++|+.+|+|.+||+|.........
T Consensus 205 grP~~~V~I~~Cgvl~~~~p~~~~ 228 (249)
T PTZ00221 205 GRPLLPVTVSFCGALTGEKPPGRQ 228 (249)
T ss_pred CCCCCCeEEEECeEecCCCCCccc
Confidence 999999999999999866544433
No 5
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-44 Score=354.10 Aligned_cols=166 Identities=46% Similarity=0.785 Sum_probs=162.7
Q ss_pred CCCCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCC
Q 003712 3 KKKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRD 82 (801)
Q Consensus 3 ~~~np~V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~ 82 (801)
.+.||.|||++.||....|+|+++|-.|++|+|++||.+||+|+.|+| |+|+.|||||+.||+|||||++++
T Consensus 133 a~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg--------ykgssfhriip~fmcqggdftn~n 204 (298)
T KOG0111|consen 133 AMENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG--------YKGSSFHRIIPKFMCQGGDFTNGN 204 (298)
T ss_pred hhhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC--------ccccchhhhhhhhhccCCccccCC
Confidence 367999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCCCCC
Q 003712 83 GTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGR 162 (801)
Q Consensus 83 g~gg~si~g~~f~dE~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~~d~~g~ 162 (801)
|+||.+|||..|.||||.|+|..+|+|+|||.|.|+||+||||++....|||++|+|||.||+||+||.+|++++...|.
T Consensus 205 gtggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgk 284 (298)
T KOG0111|consen 205 GTGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGK 284 (298)
T ss_pred CCCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccEEEEEeeecc
Q 003712 163 LTVTVKIINCGEVS 176 (801)
Q Consensus 163 P~~~I~I~~cg~l~ 176 (801)
|...|+|.+||+|.
T Consensus 285 p~qkv~i~~cge~~ 298 (298)
T KOG0111|consen 285 PQQKVKIVECGEIE 298 (298)
T ss_pred cceEEEEEeccccC
Confidence 99999999999974
No 6
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=2.8e-41 Score=340.71 Aligned_cols=170 Identities=53% Similarity=0.864 Sum_probs=159.4
Q ss_pred CCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCC
Q 003712 5 KSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGT 84 (801)
Q Consensus 5 ~np~V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~ 84 (801)
++|+||||+++++..+|+|+||||.+.||+||+||+.||+|+.... .|+.++|+|+.||||+++||||||++..++|.
T Consensus 14 ~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~--~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~ 91 (183)
T PTZ00060 14 KRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS--SGKNLHYKGSIFHRIIPQFMCQGGDITNHNGT 91 (183)
T ss_pred CCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc--cCcccccCCeEEEEEcCCCeEEeCCccCCCCC
Confidence 5789999999999999999999999999999999999999876432 46788999999999999999999999877889
Q ss_pred CCCcccCCCCCCCCCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCCCCCcc
Q 003712 85 SGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLT 164 (801)
Q Consensus 85 gg~si~g~~f~dE~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~~d~~g~P~ 164 (801)
+++++|+..|.+|+..+.|+.+|+|+||+.+++.+++||||||+++++||++|+|||+||+||+||++|+.+...++.|+
T Consensus 92 ~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~ 171 (183)
T PTZ00060 92 GGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPK 171 (183)
T ss_pred CCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCc
Confidence 99999999999998899999999999999999999999999999999999999999999999999999998866789999
Q ss_pred ccEEEEEeeecc
Q 003712 165 VTVKIINCGEVS 176 (801)
Q Consensus 165 ~~I~I~~cg~l~ 176 (801)
.+|+|++||+|.
T Consensus 172 ~~v~I~~cg~~~ 183 (183)
T PTZ00060 172 KPVVVTDCGELQ 183 (183)
T ss_pred CCeEEEEeEEcC
Confidence 999999999973
No 7
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=4.7e-41 Score=339.68 Aligned_cols=169 Identities=51% Similarity=0.776 Sum_probs=155.8
Q ss_pred CCCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCC
Q 003712 4 KKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDG 83 (801)
Q Consensus 4 ~~np~V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g 83 (801)
.+|++|||||++++..+|+|+||||.++||+||+||+.||+|+... .|....|++|.||||+++|||||||+..++|
T Consensus 16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~---~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g 92 (186)
T PLN03149 16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRK---AGLPQGYKGCQFHRVIKDFMIQGGDFLKGDG 92 (186)
T ss_pred CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccc---cCcccccCCcEEEEEcCCcEEEcCCcccCCC
Confidence 4578999999999999999999999999999999999999876421 1223459999999999999999999887889
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEE-eCHHHHHHHHhc-CCCCC
Q 003712 84 TSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELV-QGHEILKKIENV-GDEEG 161 (801)
Q Consensus 84 ~gg~si~g~~f~dE~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV-~G~dVL~kIe~~-~d~~g 161 (801)
.++.++|+..|.+|++.+.|+.+|+|+||+.+++++++||||||+++++||++|+|||+|| +||+||++|+.+ ++.++
T Consensus 93 ~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~ 172 (186)
T PLN03149 93 TGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNN 172 (186)
T ss_pred CCcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCC
Confidence 9999999999999988899999999999999999999999999999999999999999999 799999999998 66889
Q ss_pred CccccEEEEEeeec
Q 003712 162 RLTVTVKIINCGEV 175 (801)
Q Consensus 162 ~P~~~I~I~~cg~l 175 (801)
+|+.+|+|.+||++
T Consensus 173 ~P~~~i~I~~cG~~ 186 (186)
T PLN03149 173 RPKLACVISECGEM 186 (186)
T ss_pred CCcCCeEEEeCEeC
Confidence 99999999999985
No 8
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=8.9e-41 Score=331.65 Aligned_cols=164 Identities=57% Similarity=0.936 Sum_probs=152.8
Q ss_pred cEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCC
Q 003712 7 LLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSG 86 (801)
Q Consensus 7 p~V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg 86 (801)
|+||||+.+++..+|+|+||||.+.||+||+||+.||+|++|.+. +..+|+++.||||+++||||||++..++|.++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~---~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~ 77 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG---KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGG 77 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc---cccccCCCEEEEEeCCcEEEcCCccCCCCCCC
Confidence 689999999999999999999999999999999999997665432 45689999999999999999999887788899
Q ss_pred CcccCCCCCCCCCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCCCCCcccc
Q 003712 87 ESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVT 166 (801)
Q Consensus 87 ~si~g~~f~dE~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~~d~~g~P~~~ 166 (801)
+++|+..|++|++.+.|+.+|+|+||+.+++++++||||||+++++||++|+|||+||+|||||++|+.+...+++|+.+
T Consensus 78 ~~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~ 157 (164)
T cd01926 78 KSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKK 157 (164)
T ss_pred CcccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCC
Confidence 99999999999889999999999999999999999999999999999999999999999999999999983338999999
Q ss_pred EEEEEee
Q 003712 167 VKIINCG 173 (801)
Q Consensus 167 I~I~~cg 173 (801)
|+|++||
T Consensus 158 i~I~~cG 164 (164)
T cd01926 158 VVIADCG 164 (164)
T ss_pred eEEEECC
Confidence 9999997
No 9
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-41 Score=307.10 Aligned_cols=154 Identities=39% Similarity=0.585 Sum_probs=146.5
Q ss_pred CCCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCC
Q 003712 4 KKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDG 83 (801)
Q Consensus 4 ~~np~V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g 83 (801)
-+-|.|+|+|++|- |+||||-+.||+||.||.+|+. .+||+|..||||+++|||||||++ ++|
T Consensus 7 ~q~~~V~LeTsmG~-----i~~ElY~kHaP~TC~NF~eLar-----------rgYYn~v~FHRii~DFmiQGGDPT-GTG 69 (164)
T KOG0881|consen 7 WQPPNVTLETSMGK-----ITLELYWKHAPRTCQNFAELAR-----------RGYYNGVIFHRIIKDFMIQGGDPT-GTG 69 (164)
T ss_pred CCCCeEEEeecccc-----eehhhhhhcCcHHHHHHHHHHh-----------cccccceeeeehhhhheeecCCCC-CCC
Confidence 34678999999988 9999999999999999999996 889999999999999999999996 799
Q ss_pred CCCCcccCCCCCCC-CCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCC
Q 003712 84 TSGESIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEG 161 (801)
Q Consensus 84 ~gg~si~g~~f~dE-~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~-~d~~g 161 (801)
.||.+|||.+|.|| +..|+|..+|+|+|||.|+++||+||||||.+.++|||+|+|||+|+.||+|++.|-.+ ++..+
T Consensus 70 RGGaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~D 149 (164)
T KOG0881|consen 70 RGGASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSD 149 (164)
T ss_pred CCccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCC
Confidence 99999999999999 78999999999999999999999999999999999999999999999999999999988 89999
Q ss_pred CccccEEEEEeee
Q 003712 162 RLTVTVKIINCGE 174 (801)
Q Consensus 162 ~P~~~I~I~~cg~ 174 (801)
+|+.+|+|+.+.+
T Consensus 150 RPi~~~kIika~~ 162 (164)
T KOG0881|consen 150 RPIDEVKIIKAYP 162 (164)
T ss_pred CCccceeeEeeec
Confidence 9999999988754
No 10
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-39 Score=342.76 Aligned_cols=164 Identities=37% Similarity=0.567 Sum_probs=155.2
Q ss_pred CCCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCC
Q 003712 4 KKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDG 83 (801)
Q Consensus 4 ~~np~V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g 83 (801)
+++-+|-|.|..|. |.|||++|.+|.+|+||+.||. +|||+|+.|||.|.+|||||||++ |+|
T Consensus 275 Kkkgyvrl~Tn~G~-----lNlELhcd~~P~aceNFI~lc~-----------~gYYnnt~FHRsIrnFmiQGGDPT-GTG 337 (518)
T KOG0883|consen 275 KKKGYVRLVTNHGP-----LNLELHCDYAPRACENFITLCK-----------NGYYNNTIFHRSIRNFMIQGGDPT-GTG 337 (518)
T ss_pred cccceEEEeccCCc-----eeeEeecCcchHHHHHHHHHHh-----------cccccchHHHHHHHHHeeeCCCCC-CCC
Confidence 56778999999988 9999999999999999999996 899999999999999999999996 799
Q ss_pred CCCCcccCCCCCCC-CCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCC
Q 003712 84 TSGESIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEG 161 (801)
Q Consensus 84 ~gg~si~g~~f~dE-~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~-~d~~g 161 (801)
.||++|+|.+|.|| ...|.|+.+|+|+|||.|+++||+|||||+..+.|||++|||||+||.|++||.+|+.+ +++.+
T Consensus 338 ~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~D 417 (518)
T KOG0883|consen 338 RGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKD 417 (518)
T ss_pred CCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCC
Confidence 99999999999999 67899999999999999999999999999999999999999999999999999999999 88889
Q ss_pred CccccEEEEEeeecccccccccc
Q 003712 162 RLTVTVKIINCGEVSEDKKKGNK 184 (801)
Q Consensus 162 ~P~~~I~I~~cg~l~~~~kk~~k 184 (801)
.|+.+|+|.+..|.++.+.+..+
T Consensus 418 rP~e~I~i~~~~VFVdPfeEa~~ 440 (518)
T KOG0883|consen 418 RPKEEIKIEDAIVFVDPFEEADK 440 (518)
T ss_pred CcccceEEeeeEEeeCcHHHHHH
Confidence 99999999999998887766544
No 11
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=8.9e-38 Score=308.71 Aligned_cols=156 Identities=39% Similarity=0.602 Sum_probs=145.0
Q ss_pred EEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCC
Q 003712 8 LVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGE 87 (801)
Q Consensus 8 ~V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~ 87 (801)
+|.|+|++|. |+||||++.||+||+||++||+ .+||+|+.||||+++||||||++. ++|.+++
T Consensus 1 ~v~~~T~~G~-----i~ieL~~~~aP~t~~nF~~L~~-----------~g~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~ 63 (159)
T cd01923 1 YVRLHTNKGD-----LNLELHCDKAPKACENFIKLCK-----------KGYYDGTIFHRSIRNFMIQGGDPT-GTGRGGE 63 (159)
T ss_pred CEEEEEcccc-----EEEEEeCCCChHHHHHHHHHHh-----------cCccCCcEEEEEeCCcEEEecccC-CCCCCCc
Confidence 4788998877 9999999999999999999997 578999999999999999999985 6788999
Q ss_pred cccCCCCCCC-CCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCCCccc
Q 003712 88 SIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTV 165 (801)
Q Consensus 88 si~g~~f~dE-~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~-~d~~g~P~~ 165 (801)
++|+..|.+| +..+.|+.+|+|+||+.+++++++||||||+++++||++|+|||+||+||+||++|+.+ ++.+++|+.
T Consensus 64 ~~~g~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~ 143 (159)
T cd01923 64 SIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKE 143 (159)
T ss_pred cccCCccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCC
Confidence 9999999999 45788999999999999999999999999999999999999999999999999999998 678899999
Q ss_pred cEEEEEeeecccccc
Q 003712 166 TVKIINCGEVSEDKK 180 (801)
Q Consensus 166 ~I~I~~cg~l~~~~k 180 (801)
+|+|.+|+++.+.+.
T Consensus 144 ~i~I~~~~i~~dpf~ 158 (159)
T cd01923 144 EIKIEDTSVFVDPFE 158 (159)
T ss_pred CeEEEEeEEEeCCCC
Confidence 999999999987654
No 12
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-38 Score=336.03 Aligned_cols=158 Identities=33% Similarity=0.534 Sum_probs=144.5
Q ss_pred CcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCC
Q 003712 6 SLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTS 85 (801)
Q Consensus 6 np~V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~g 85 (801)
..+|+|.|+.|+ |.||||+.+||++|.|||+||. .|||+|+.||+++|+|+||||+++ ++|+|
T Consensus 12 tgkvil~TT~G~-----I~iELW~kE~P~acrnFiqKOG-----------egyy~nt~fhrlvp~f~~Qggdp~-~~gtG 74 (439)
T KOG0885|consen 12 TGKVILKTTKGD-----IDIELWAKECPKACRNFIQLCL-----------EGYYDNTEFHRLVPGFLVQGGDPT-GTGTG 74 (439)
T ss_pred cceEEEEeccCc-----eeeeehhhhhhHHHHHHHHHHH-----------hccccCceeeeeccchhcccCCCC-CCCCC
Confidence 458999999999 9999999999999999999998 789999999999999999999996 79999
Q ss_pred CCcccCCCCCCC-CCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHH--hc-CCCCC
Q 003712 86 GESIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIE--NV-GDEEG 161 (801)
Q Consensus 86 g~si~g~~f~dE-~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe--~~-~d~~g 161 (801)
|++|||.+|.+| |..|.|+.+|+|+|||.+.+.||+||||||+++++|+++|+|||+|+ |-.|+..+. .+ ++.+.
T Consensus 75 gesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVt-GdtIYn~lri~e~eida~~ 153 (439)
T KOG0885|consen 75 GESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVT-GDTIYNMLRISEVEIDADD 153 (439)
T ss_pred ccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeec-chhhhhhhhhccccccccc
Confidence 999999999999 78999999999999999999999999999999999999999999999 655555444 44 67788
Q ss_pred CccccEEEEEeeeccccccc
Q 003712 162 RLTVTVKIINCGEVSEDKKK 181 (801)
Q Consensus 162 ~P~~~I~I~~cg~l~~~~kk 181 (801)
+|+.+.+|++|+|+...|..
T Consensus 154 Rp~~p~kI~s~EV~~npFdD 173 (439)
T KOG0885|consen 154 RPVDPPKIKSVEVLINPFDD 173 (439)
T ss_pred CCCCccceeeeEeecCchhh
Confidence 99999999999998765543
No 13
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=304.35 Aligned_cols=148 Identities=42% Similarity=0.628 Sum_probs=131.7
Q ss_pred EEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCc
Q 003712 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGES 88 (801)
Q Consensus 9 V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~s 88 (801)
|.|+|++|+ |+||||+++||+||+||++||. .+||+|+.|||||++|||||||++.++|.+|+.
T Consensus 2 v~~~t~~G~-----I~ieL~~~~aP~Tv~NF~~l~~-----------~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~ 65 (158)
T COG0652 2 VILETNKGD-----ITIELYPDKAPKTVANFLQLVK-----------EGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGPG 65 (158)
T ss_pred ceeeccCCC-----EEEEECCCcCcHHHHHHHHHHH-----------cCCCCCceEEEeecCceeecCCCCCCCCCCCCC
Confidence 567788777 9999999999999999999996 789999999999999999999999888888884
Q ss_pred ccCCCCCCCCCCCCCCC--CceEEecccC-CCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCC----C
Q 003712 89 IYEGKFPDESPRLKHDR--PGLLSMSIAD-RDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDE----E 160 (801)
Q Consensus 89 i~g~~f~dE~~~l~h~~--~G~Lsma~~g-~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~-~d~----~ 160 (801)
.+|++|++.+.|+. +|+|+||+.+ +++|+||||||+.++++||++|+|||+||+||+||++|+.+ +.. .
T Consensus 66 ---~~f~~E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~ 142 (158)
T COG0652 66 ---PPFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQ 142 (158)
T ss_pred ---CCCcccccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCccc
Confidence 89999998888887 9999999998 99999999999999999999999999999999999999997 332 2
Q ss_pred CCccccEEEEEeeec
Q 003712 161 GRLTVTVKIINCGEV 175 (801)
Q Consensus 161 g~P~~~I~I~~cg~l 175 (801)
..|..+++|..+.++
T Consensus 143 ~~~~~~~~i~~~~~~ 157 (158)
T COG0652 143 DVPADPVKILSVKIV 157 (158)
T ss_pred CCCCCCeEEeeeeee
Confidence 345566777665543
No 14
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=7.7e-37 Score=300.22 Aligned_cols=148 Identities=41% Similarity=0.659 Sum_probs=138.0
Q ss_pred EEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCc
Q 003712 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGES 88 (801)
Q Consensus 9 V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~s 88 (801)
|.|+|+.|. |+||||+++||+||+||++||+ .+||+|+.||||+++|||||||+. ++|.++.+
T Consensus 3 v~l~T~~G~-----i~ieL~~~~aP~t~~nF~~L~~-----------~g~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~ 65 (153)
T cd01928 3 VTLHTNLGD-----IKIELFCDDCPKACENFLALCA-----------SGYYNGCIFHRNIKGFMVQTGDPT-GTGKGGES 65 (153)
T ss_pred EEEEEcccc-----EEEEEcCCCCcHHHHHHHHHHh-----------cCccCCcEEEEeCCCCEEEccccC-CCCCCCCc
Confidence 788888877 9999999999999999999997 468999999999999999999985 57888899
Q ss_pred ccCCCCCCCCC-CCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCCCcccc
Q 003712 89 IYEGKFPDESP-RLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVT 166 (801)
Q Consensus 89 i~g~~f~dE~~-~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~-~d~~g~P~~~ 166 (801)
+|+.+|.+|+. .+.|+.+|+|+||+.+++++++||||||+++++||++|+|||+||+|||||++|+.+ ++.+++|+.+
T Consensus 66 ~~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~ 145 (153)
T cd01928 66 IWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEE 145 (153)
T ss_pred cCCCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCC
Confidence 99999999964 688989999999999999999999999999999999999999999999999999998 6788999999
Q ss_pred EEEEEee
Q 003712 167 VKIINCG 173 (801)
Q Consensus 167 I~I~~cg 173 (801)
|+|.+|.
T Consensus 146 i~I~~~~ 152 (153)
T cd01928 146 IRIKDVT 152 (153)
T ss_pred eEEEEeE
Confidence 9999984
No 15
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.5e-36 Score=296.68 Aligned_cols=144 Identities=46% Similarity=0.657 Sum_probs=134.0
Q ss_pred EEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCccc
Q 003712 11 MDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIY 90 (801)
Q Consensus 11 ~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~si~ 90 (801)
|+|+.|. |+||||.++||+||+||+.||+ .+||+|+.||||+++||||||++. ++|.+++++|
T Consensus 2 i~T~~G~-----i~ieL~~~~aP~t~~nF~~L~~-----------~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~ 64 (148)
T cd01927 2 IHTTKGD-----IHIRLFPEEAPKTVENFTTHAR-----------NGYYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIW 64 (148)
T ss_pred eEecccc-----EEEEEeCCCCcHHHHHHHHHhh-----------cCCcCCcEEEEEcCCcEEEecccC-CCCCCCCccc
Confidence 6777666 9999999999999999999997 568999999999999999999975 6788999999
Q ss_pred CCCCCCCCC-CCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCCCccccEE
Q 003712 91 EGKFPDESP-RLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVK 168 (801)
Q Consensus 91 g~~f~dE~~-~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~-~d~~g~P~~~I~ 168 (801)
+..|.+|+. .+.|+.+|+|+||+.+++++++||||||+++++||++|+|||+||+||+||++|+.+ ++.+++|+.+|+
T Consensus 65 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~ 144 (148)
T cd01927 65 GKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIK 144 (148)
T ss_pred CCccccccccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeE
Confidence 999999964 789999999999999999999999999999999999999999999999999999988 678899999999
Q ss_pred EEE
Q 003712 169 IIN 171 (801)
Q Consensus 169 I~~ 171 (801)
|..
T Consensus 145 I~~ 147 (148)
T cd01927 145 IIN 147 (148)
T ss_pred EEe
Confidence 975
No 16
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=2e-36 Score=301.05 Aligned_cols=153 Identities=35% Similarity=0.539 Sum_probs=137.6
Q ss_pred EEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCccc
Q 003712 11 MDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIY 90 (801)
Q Consensus 11 ~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~si~ 90 (801)
|+|++|. |+||||.+.||+||+||++||+ .+||+|+.||||+++||||||++. +++.++++++
T Consensus 2 l~Ts~G~-----i~ieL~~~~aP~t~~nF~~L~~-----------~~~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~ 64 (166)
T cd01921 2 LETTLGD-----LVIDLFTDECPLACLNFLKLCK-----------LKYYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIY 64 (166)
T ss_pred cEeccCC-----EEEEEcCCCCCHHHHHHHHHHh-----------cCCcCCCEEEEEeCCceEEECCcC-CCCCCCcccc
Confidence 6777766 9999999999999999999997 568999999999999999999986 5677787776
Q ss_pred C-------CCCCCCC-CCCCCCCCceEEecccCCCCCCceEEEEccC-CCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCC
Q 003712 91 E-------GKFPDES-PRLKHDRPGLLSMSIADRDTLGSQFIITFKA-NHSLDRKYVVFGELVQGHEILKKIENV-GDEE 160 (801)
Q Consensus 91 g-------~~f~dE~-~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~-~~~LDg~~tVFGkVV~G~dVL~kIe~~-~d~~ 160 (801)
+ ..|.+|. ..++|+.+|+|+||+.+++++++||||||.+ +++||++|+|||+||+||+||++|+.+ ++.+
T Consensus 65 ~~~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~ 144 (166)
T cd01921 65 SQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDD 144 (166)
T ss_pred cccccccCcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCC
Confidence 5 3567774 5789999999999999999999999999975 899999999999999999999999988 7788
Q ss_pred CCccccEEEEEeeecccccc
Q 003712 161 GRLTVTVKIINCGEVSEDKK 180 (801)
Q Consensus 161 g~P~~~I~I~~cg~l~~~~k 180 (801)
+.|+.+|+|..|++|...+.
T Consensus 145 ~~P~~~i~I~~~~i~~~pf~ 164 (166)
T cd01921 145 GRPLKDIRIKHTHILDDPFP 164 (166)
T ss_pred CCCCCCeEEEEEEEECCCCC
Confidence 99999999999999986654
No 17
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-37 Score=303.44 Aligned_cols=163 Identities=52% Similarity=0.900 Sum_probs=157.6
Q ss_pred CCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEE---eecCceeeeCcCcCC
Q 003712 5 KSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHR---VIKGSMAEGGDFVKR 81 (801)
Q Consensus 5 ~np~V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~R---I~kgf~iQgGd~~~~ 81 (801)
.||+||||++++++++|+|+||||+|.+|+|++||..||+|++|++ |++.+||+ ++++||+||||++..
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~--------yk~s~fhr~~~~~~~fm~qggDft~h 73 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG--------YKGSCFHRLIPIIPGFMCQGGDFTCH 73 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc--------cccchhhhccccccceeeccCccccc
Confidence 5899999999999999999999999999999999999999999887 99999999 345799999999999
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCCCC
Q 003712 82 DGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEG 161 (801)
Q Consensus 82 ~g~gg~si~g~~f~dE~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~~d~~g 161 (801)
+|++|++||++.|.|||+.|+|..+|+|+|||.++++||+||||++....|||++|||||+|++||+|+++|+..+..+|
T Consensus 74 ngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~g 153 (167)
T KOG0865|consen 74 NGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNG 153 (167)
T ss_pred CCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccEEEEEeeec
Q 003712 162 RLTVTVKIINCGEV 175 (801)
Q Consensus 162 ~P~~~I~I~~cg~l 175 (801)
.+..+|.|.+||+|
T Consensus 154 k~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 154 KTSKKITIADCGQL 167 (167)
T ss_pred cccccEEEecCCcC
Confidence 99999999999976
No 18
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=9.4e-36 Score=290.35 Aligned_cols=143 Identities=39% Similarity=0.643 Sum_probs=131.8
Q ss_pred EEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCccc
Q 003712 11 MDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIY 90 (801)
Q Consensus 11 ~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~si~ 90 (801)
|+|++|. |+||||.+.||+||+||++||+ .+||+++.||||+++||||||++. ++|.+++++|
T Consensus 2 i~T~~G~-----i~ieL~~~~aP~t~~nF~~L~~-----------~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~ 64 (146)
T cd01922 2 LETTMGE-----ITLELYWNHAPKTCKNFYELAK-----------RGYYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIY 64 (146)
T ss_pred eEecccc-----EEEEEcCCCCcHHHHHHHHHHh-----------cCCcCCcEEEEEcCCcEEEecccC-CCCCCccccc
Confidence 5676666 9999999999999999999997 568999999999999999999985 5788889999
Q ss_pred CCCCCCC-CCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCCCCCccccEEE
Q 003712 91 EGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKI 169 (801)
Q Consensus 91 g~~f~dE-~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~~d~~g~P~~~I~I 169 (801)
+..|.+| +..++|+..|+|+||+.+++++++||||||+++++||++|+|||+||+||+||++|+.+...+++|+.+|+|
T Consensus 65 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I 144 (146)
T cd01922 65 GKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKI 144 (146)
T ss_pred CCCcccccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEE
Confidence 9999999 567899999999999999999999999999999999999999999999999999999984338899999998
Q ss_pred E
Q 003712 170 I 170 (801)
Q Consensus 170 ~ 170 (801)
+
T Consensus 145 ~ 145 (146)
T cd01922 145 L 145 (146)
T ss_pred e
Confidence 6
No 19
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-36 Score=276.14 Aligned_cols=152 Identities=39% Similarity=0.612 Sum_probs=141.5
Q ss_pred EEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCc
Q 003712 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGES 88 (801)
Q Consensus 9 V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~s 88 (801)
|.|+|++|+ |.||||++.+|+||+|||.||. ..||+||.||+.+++||||+|+++ ..|.||++
T Consensus 3 vtlht~~gd-----ikiev~~e~tpktce~~l~~~~-----------~~~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~s 65 (161)
T KOG0884|consen 3 VTLHTDVGD-----IKIEVFCERTPKTCENFLALCA-----------SDYYNGCIFHRNIKGFMVQTGDPT-HTGRGGNS 65 (161)
T ss_pred EEEeeccCc-----EEEEEEecCChhHHHHHHHHhh-----------hhhccceeecCCCCCcEEEeCCCC-CCCCCCcc
Confidence 778999999 9999999999999999999996 679999999999999999999986 58999999
Q ss_pred ccCCCCCCC-CCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-C-CCCCCccc
Q 003712 89 IYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-G-DEEGRLTV 165 (801)
Q Consensus 89 i~g~~f~dE-~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~-~-d~~g~P~~ 165 (801)
|+|.+|+|| ..-|+|+.+|+|+|||.|+++|++|||||.+.++|||.+|+|||+||+|+|+|+.|+.+ . ....+|+.
T Consensus 66 iwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~ 145 (161)
T KOG0884|consen 66 IWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLN 145 (161)
T ss_pred ccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccch
Confidence 999999999 45799999999999999999999999999999999999999999999999999999998 3 44589999
Q ss_pred cEEEEEeeeccc
Q 003712 166 TVKIINCGEVSE 177 (801)
Q Consensus 166 ~I~I~~cg~l~~ 177 (801)
.+.|.++.+-+.
T Consensus 146 ~~~ik~itihan 157 (161)
T KOG0884|consen 146 DVHIKDITIHAN 157 (161)
T ss_pred heeeeeeEEecC
Confidence 999999876543
No 20
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2.1e-35 Score=295.02 Aligned_cols=160 Identities=34% Similarity=0.516 Sum_probs=145.4
Q ss_pred CCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCC
Q 003712 5 KSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGT 84 (801)
Q Consensus 5 ~np~V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~ 84 (801)
..-.|+|+|++|. |+||||++.||+||+||+.||+ .+||+|+.||||+++||||||++. ++|.
T Consensus 4 ~~~~v~i~Ts~G~-----i~ieL~~~~~P~t~~nF~~L~~-----------~~~Y~~~~f~Rvi~~f~iQgGd~~-~~g~ 66 (171)
T cd01925 4 TTGKVILKTTAGD-----IDIELWSKEAPKACRNFIQLCL-----------EGYYDNTIFHRVVPGFIIQGGDPT-GTGT 66 (171)
T ss_pred cccEEEEEEcccc-----EEEEEeCCCChHHHHHHHHHHh-----------cCCCCCCEEEEEcCCcEEEccccC-CCCc
Confidence 3467999999887 9999999999999999999997 568999999999999999999986 6788
Q ss_pred CCCcccCCCCCCCC-CCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEe-CHHHHHHHHhc-CCCCC
Q 003712 85 SGESIYEGKFPDES-PRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQ-GHEILKKIENV-GDEEG 161 (801)
Q Consensus 85 gg~si~g~~f~dE~-~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~-G~dVL~kIe~~-~d~~g 161 (801)
+++++|+..|.+|. ..+.|+.+|+|+||+.+++++++||||||+++++||++|+|||+|++ +|++|++|+.+ ++.++
T Consensus 67 g~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~ 146 (171)
T cd01925 67 GGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDE 146 (171)
T ss_pred cCcccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCC
Confidence 99999999999995 46889999999999999999999999999999999999999999994 67889999988 77789
Q ss_pred CccccEEEEEeeeccccccc
Q 003712 162 RLTVTVKIINCGEVSEDKKK 181 (801)
Q Consensus 162 ~P~~~I~I~~cg~l~~~~kk 181 (801)
.|+.+|+|..|+++.+.+.+
T Consensus 147 ~P~~~i~I~~~~i~~~pf~~ 166 (171)
T cd01925 147 RPVYPPKITSVEVLENPFDD 166 (171)
T ss_pred CcCCCeEEEEEEEEcCCchh
Confidence 99999999999988766544
No 21
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-36 Score=325.79 Aligned_cols=152 Identities=39% Similarity=0.578 Sum_probs=145.5
Q ss_pred CcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCC
Q 003712 6 SLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTS 85 (801)
Q Consensus 6 np~V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~g 85 (801)
+.-+.|+|++|+ |.|.||+++||+||+||...|. +|||+|.+|||||++||||+||++ |+|+|
T Consensus 404 ~~~aiihtt~gd-----i~~kl~p~ecpktvenf~th~r-----------ngyy~~~~fhriik~fmiqtgdp~-g~gtg 466 (558)
T KOG0882|consen 404 GKAAIIHTTQGD-----IHIKLYPEECPKTVENFTTHSR-----------NGYYDNHTFHRIIKGFMIQTGDPL-GDGTG 466 (558)
T ss_pred ccceEEEecccc-----eEEEecccccchhhhhhhcccc-----------CccccCcchHHhhhhheeecCCCC-CCCCC
Confidence 445789999999 9999999999999999999996 899999999999999999999996 79999
Q ss_pred CCcccCCCCCCC-CCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCCCc
Q 003712 86 GESIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRL 163 (801)
Q Consensus 86 g~si~g~~f~dE-~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~-~d~~g~P 163 (801)
|++|+|..|+|| +..|.|+.+.+|+|||.|+|+||+|||||+...+||||+|||||+|+.||+|++.|+++ ++.+++|
T Consensus 467 gesiwg~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp 546 (558)
T KOG0882|consen 467 GESIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRP 546 (558)
T ss_pred CcccccccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCC
Confidence 999999999999 67899999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred cccEEEEEeee
Q 003712 164 TVTVKIINCGE 174 (801)
Q Consensus 164 ~~~I~I~~cg~ 174 (801)
+.+|+|++..+
T Consensus 547 ~e~v~iinisv 557 (558)
T KOG0882|consen 547 YEDVKIINISV 557 (558)
T ss_pred CCceeEEEEec
Confidence 99999999754
No 22
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=3.6e-34 Score=290.44 Aligned_cols=153 Identities=29% Similarity=0.444 Sum_probs=132.9
Q ss_pred CCCcEEEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCC
Q 003712 4 KKSLLVFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDG 83 (801)
Q Consensus 4 ~~np~V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g 83 (801)
..+++|.|+|+.|+ |+||||.+.||+||+||+.||. .+||+|+.||||+++||||||++....+
T Consensus 26 ~~~~~v~l~T~~G~-----i~ieL~~~~aP~t~~NF~~L~~-----------~g~Ydg~~FhRvi~~f~iQgG~~~~~~~ 89 (190)
T PRK10903 26 KGDPHVLLTTSAGN-----IELELNSQKAPVSVKNFVDYVN-----------SGFYNNTTFHRVIPGFMIQGGGFTEQMQ 89 (190)
T ss_pred CCCcEEEEEecccc-----EEEEEeCCCCcHHHHHHHHHHh-----------cCCcCCcEEEEEeCCceEEeCCcCCCCC
Confidence 45778999998877 9999999999999999999996 6789999999999999999998764322
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCceEEeccc-CCCCCCceEEEEccCCCCCCC-----CCcEEEEEEeCHHHHHHHHhc-
Q 003712 84 TSGESIYEGKFPDESPRLKHDRPGLLSMSIA-DRDTLGSQFIITFKANHSLDR-----KYVVFGELVQGHEILKKIENV- 156 (801)
Q Consensus 84 ~gg~si~g~~f~dE~~~l~h~~~G~Lsma~~-g~~~ngSqFfITL~~~~~LDg-----~~tVFGkVV~G~dVL~kIe~~- 156 (801)
...++..|.+|.....|+..|+|+||+. ++++|++||||||.++++||+ +|+|||+|++|||||++|+.+
T Consensus 90 ---~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~ 166 (190)
T PRK10903 90 ---QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVP 166 (190)
T ss_pred ---CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCC
Confidence 2334667888865556677999999987 489999999999999999984 899999999999999999998
Q ss_pred CCC----CCCccccEEEEEeeec
Q 003712 157 GDE----EGRLTVTVKIINCGEV 175 (801)
Q Consensus 157 ~d~----~g~P~~~I~I~~cg~l 175 (801)
++. ++.|+.+|+|.+|+++
T Consensus 167 ~~~~~~~~~~P~~~v~I~~~~v~ 189 (190)
T PRK10903 167 THDVGPYQNVPSKPVVILSAKVL 189 (190)
T ss_pred CCCCCCCCCcccCCeEEEEEEEe
Confidence 443 4799999999999875
No 23
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1.4e-33 Score=280.07 Aligned_cols=148 Identities=28% Similarity=0.428 Sum_probs=125.4
Q ss_pred EEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCc
Q 003712 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGES 88 (801)
Q Consensus 9 V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~s 88 (801)
|.|+|+.|+ |+||||.+.||+||+||+.||+ .+||+|+.||||+++||||||++..+.+. .
T Consensus 2 v~~~T~~G~-----i~ieL~~~~aP~t~~nF~~L~~-----------~g~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~ 62 (164)
T PRK10791 2 VTFHTNHGD-----IVIKTFDDKAPETVKNFLDYCR-----------EGFYNNTIFHRVINGFMIQGGGFEPGMKQ---K 62 (164)
T ss_pred EEEEEcccc-----EEEEEeCCCCcHHHHHHHHHHh-----------cCCcCCcEEEEEecCcEEEeCCcCCCCCc---C
Confidence 678888877 9999999999999999999997 57899999999999999999998654332 2
Q ss_pred ccCCCCCCCCCCCCCCCCceEEecccC-CCCCCceEEEEccCCCCCC-------C-CCcEEEEEEeCHHHHHHHHhc-CC
Q 003712 89 IYEGKFPDESPRLKHDRPGLLSMSIAD-RDTLGSQFIITFKANHSLD-------R-KYVVFGELVQGHEILKKIENV-GD 158 (801)
Q Consensus 89 i~g~~f~dE~~~l~h~~~G~Lsma~~g-~~~ngSqFfITL~~~~~LD-------g-~~tVFGkVV~G~dVL~kIe~~-~d 158 (801)
.++..|.+|.....|+.+|+|+||+.+ +++|++||||||.++++|| + +|+|||+|++||+||++|+.+ ++
T Consensus 63 ~~~~~~~~e~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~ 142 (164)
T PRK10791 63 ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATG 142 (164)
T ss_pred CCCCCcCCcccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCC
Confidence 346678888444444579999999984 8999999999999988776 3 799999999999999999988 43
Q ss_pred C----CCCccccEEEEEeeec
Q 003712 159 E----EGRLTVTVKIINCGEV 175 (801)
Q Consensus 159 ~----~g~P~~~I~I~~cg~l 175 (801)
. ++.|+.+|+|..|.+.
T Consensus 143 ~~~~~~~~P~~~v~I~~~~i~ 163 (164)
T PRK10791 143 RSGMHQDVPKEDVIIESVTVS 163 (164)
T ss_pred CCCccCCCcCCCeEEEEEEEe
Confidence 3 3699999999999654
No 24
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-33 Score=293.65 Aligned_cols=160 Identities=33% Similarity=0.495 Sum_probs=147.8
Q ss_pred EEEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCc
Q 003712 9 VFMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGES 88 (801)
Q Consensus 9 V~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~s 88 (801)
|+|+|++|+ |||+||.+++|.||.|||.||. ..||+.|.||.|..+|++|.||++ |+|.||++
T Consensus 3 VlieTtlGD-----lvIDLf~~erP~~clNFLKLCk-----------~KYYN~clfh~vq~~f~aQTGDPt-GtG~GG~s 65 (479)
T KOG0415|consen 3 VLIETTLGD-----LVIDLFVKERPRTCLNFLKLCK-----------IKYYNFCLFHTVQRDFTAQTGDPT-GTGDGGES 65 (479)
T ss_pred EEEEeeccc-----EEeeeecccCcHHHHHHHHHHh-----------HhhcccceeeeccccceeecCCCC-CCCCCcce
Confidence 889999999 9999999999999999999995 789999999999999999999997 69999999
Q ss_pred ccCC-------CCCCC-CCCCCCCCCceEEecccCCCCCCceEEEEccC-CCCCCCCCcEEEEEEeCHHHHHHHHhc-CC
Q 003712 89 IYEG-------KFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKA-NHSLDRKYVVFGELVQGHEILKKIENV-GD 158 (801)
Q Consensus 89 i~g~-------~f~dE-~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~-~~~LDg~~tVFGkVV~G~dVL~kIe~~-~d 158 (801)
||+. .|..| ++.|+|...|+|+|++.|.+.+|+||||||++ +..||++|+|||+|++||+||.+|+.+ .+
T Consensus 66 i~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD 145 (479)
T KOG0415|consen 66 IYGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVD 145 (479)
T ss_pred eeeecccccchhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcC
Confidence 9874 35666 67899999999999999999999999999986 689999999999999999999999987 99
Q ss_pred CCCCccccEEEEEeeeccccccccccc
Q 003712 159 EEGRLTVTVKIINCGEVSEDKKKGNKL 185 (801)
Q Consensus 159 ~~g~P~~~I~I~~cg~l~~~~kk~~k~ 185 (801)
.++.|+.+|.|.+.-||.+.|......
T Consensus 146 ~~~rPykdIRI~HTiiLdDPFddpp~l 172 (479)
T KOG0415|consen 146 PKNRPYKDIRIKHTIILDDPFDDPPDL 172 (479)
T ss_pred CCCCcccceeeeeeEEecCCCCCchhh
Confidence 999999999999999998877665544
No 25
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=9.2e-33 Score=271.91 Aligned_cols=142 Identities=32% Similarity=0.481 Sum_probs=120.5
Q ss_pred EEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCccc
Q 003712 11 MDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIY 90 (801)
Q Consensus 11 ~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~si~ 90 (801)
|+|++|. |+||||.+.||+||+||+.||+ .+||+|+.||||+++||||||++....+ ...+
T Consensus 2 l~T~~G~-----i~ieL~~~~aP~t~~nF~~L~~-----------~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~---~~~~ 62 (155)
T cd01920 2 FQTSLGD-----IVVELYDDKAPITVENFLAYVR-----------KGFYDNTIFHRVISGFVIQGGGFTPDLA---QKET 62 (155)
T ss_pred cEeccee-----EEEEEeCCCCcHHHHHHHHHHh-----------cCCCCCCEEEEEeCCcEEEeCCCCCCCC---cccc
Confidence 4566555 9999999999999999999997 5789999999999999999999864432 2334
Q ss_pred CCCCCCCCCCCCCCCCceEEecccC-CCCCCceEEEEccCCCCCCC-----CCcEEEEEEeCHHHHHHHHhc-CCC----
Q 003712 91 EGKFPDESPRLKHDRPGLLSMSIAD-RDTLGSQFIITFKANHSLDR-----KYVVFGELVQGHEILKKIENV-GDE---- 159 (801)
Q Consensus 91 g~~f~dE~~~l~h~~~G~Lsma~~g-~~~ngSqFfITL~~~~~LDg-----~~tVFGkVV~G~dVL~kIe~~-~d~---- 159 (801)
+..|.+|.....|+..|+|+||+.+ ++++++||||||.++++||+ +|+|||+||+||+||++|+.+ ++.
T Consensus 63 ~~~~~~e~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~ 142 (155)
T cd01920 63 LKPIKNEAGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSY 142 (155)
T ss_pred CCcccCcccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCc
Confidence 6678888655566789999999974 89999999999999999995 799999999999999999998 433
Q ss_pred CCCccccEEEEE
Q 003712 160 EGRLTVTVKIIN 171 (801)
Q Consensus 160 ~g~P~~~I~I~~ 171 (801)
++.|+.+|+|..
T Consensus 143 ~~~p~~~v~i~~ 154 (155)
T cd01920 143 QDVPVQDVIIES 154 (155)
T ss_pred CCCcCCCeEEEE
Confidence 258888888865
No 26
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=3.1e-32 Score=267.05 Aligned_cols=150 Identities=43% Similarity=0.700 Sum_probs=128.5
Q ss_pred EEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCC-Cc
Q 003712 10 FMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSG-ES 88 (801)
Q Consensus 10 ~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg-~s 88 (801)
||+|++++ +|+|+||||.++||++|+||++||+ .++|+|+.||+|+++++||+|++......+. ..
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~-----------~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~ 67 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCT-----------SGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDS 67 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHH-----------TTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEB
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhc-----------ccccCCceeecccccceeeeeeccCCCCcccccc
Confidence 78888866 8999999999999999999999998 4689999999999999999999865433111 12
Q ss_pred ccCCCCCCCC--CCCCCCCCceEEecccC--CCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhcCCCCCCcc
Q 003712 89 IYEGKFPDES--PRLKHDRPGLLSMSIAD--RDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLT 164 (801)
Q Consensus 89 i~g~~f~dE~--~~l~h~~~G~Lsma~~g--~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~~d~~g~P~ 164 (801)
..+..+++|+ ..+.| .+|+|+|++.+ ++.+++||||+|.++++||++|+|||+||+||+||++|+.+...+ +|+
T Consensus 68 ~~~~~~~~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~ 145 (155)
T PF00160_consen 68 TGGEPIPDEFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPK 145 (155)
T ss_dssp TTBSCBSSSGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBS
T ss_pred cCccccccccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccC
Confidence 2344688886 34555 79999999875 788999999999999999999999999999999999999984333 999
Q ss_pred ccEEEEEeee
Q 003712 165 VTVKIINCGE 174 (801)
Q Consensus 165 ~~I~I~~cg~ 174 (801)
.+|.|.+|||
T Consensus 146 ~~v~I~~cgv 155 (155)
T PF00160_consen 146 QDVTISSCGV 155 (155)
T ss_dssp STEEEEEEEE
T ss_pred CCeEEEEeEC
Confidence 9999999986
No 27
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.98 E-value=6e-32 Score=262.61 Aligned_cols=143 Identities=45% Similarity=0.618 Sum_probs=127.4
Q ss_pred EEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCcc
Q 003712 10 FMDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESI 89 (801)
Q Consensus 10 ~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~si 89 (801)
+|+|++|. |+||||.+.||++|+||+.||+ .++|+|+.||+|+++|+||+|++....+.+ ..
T Consensus 1 ~~~T~~G~-----i~IeL~~~~~P~~~~nF~~l~~-----------~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~ 62 (146)
T cd00317 1 TLDTTKGR-----IVIELYGDEAPKTVENFLSLAR-----------GGFYDGTTFHRVIPGFMIQGGDPTGTGGGG--SG 62 (146)
T ss_pred CeEeccCc-----EEEEEcCCCChHHHHHHHHHHh-----------cCCcCCCEEEEEeCCCeEEECCCCCCCCCC--Cc
Confidence 46777766 9999999999999999999997 458999999999999999999987543322 46
Q ss_pred cCCCCCCCCCCCC-CCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCCCccccE
Q 003712 90 YEGKFPDESPRLK-HDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTV 167 (801)
Q Consensus 90 ~g~~f~dE~~~l~-h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~-~d~~g~P~~~I 167 (801)
++.+|++|+.... |+.+|+|+|++.+++.+++||||||.++++||++|+|||+||+||+||++|+.+ +++++.|+.+|
T Consensus 63 ~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i 142 (146)
T cd00317 63 PGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPV 142 (146)
T ss_pred CCCccCCccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCce
Confidence 6788999966555 888999999999989999999999999999999999999999999999999998 67799999999
Q ss_pred EEE
Q 003712 168 KII 170 (801)
Q Consensus 168 ~I~ 170 (801)
+|.
T Consensus 143 ~I~ 145 (146)
T cd00317 143 TIS 145 (146)
T ss_pred EEe
Confidence 996
No 28
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.97 E-value=6.1e-31 Score=263.91 Aligned_cols=125 Identities=31% Similarity=0.488 Sum_probs=108.2
Q ss_pred eeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCC-C---------------
Q 003712 20 VERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRD-G--------------- 83 (801)
Q Consensus 20 ~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~-g--------------- 83 (801)
.|.|+||||.+.||+||+||+.||+ .+||+++.||||+++||||||++.... +
T Consensus 6 ~G~i~ieL~~~~aP~t~~NF~~L~~-----------~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e 74 (176)
T cd01924 6 NGTITIVLDGYNAPVTAGNFVDLVE-----------RGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLE 74 (176)
T ss_pred cceEEEEEcCCCCCHHHHHHHHHHH-----------hCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccce
Confidence 4669999999999999999999997 678999999999999999999986431 1
Q ss_pred ----CCCCcccCCCCC-----CCCCCCCCCCCceEEecccC--CCCCCceEEEEcc-------CCCCCCCCCcEEEEEEe
Q 003712 84 ----TSGESIYEGKFP-----DESPRLKHDRPGLLSMSIAD--RDTLGSQFIITFK-------ANHSLDRKYVVFGELVQ 145 (801)
Q Consensus 84 ----~gg~si~g~~f~-----dE~~~l~h~~~G~Lsma~~g--~~~ngSqFfITL~-------~~~~LDg~~tVFGkVV~ 145 (801)
..+..+|+..|. +++..+.|+.+|+|+||+.+ ++++++||||+|. .+++||++|+|||+||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~Vve 154 (176)
T cd01924 75 IKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTD 154 (176)
T ss_pred ecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEec
Confidence 124456666543 55677888889999999986 6999999999998 78999999999999999
Q ss_pred CHHHHHHHHh
Q 003712 146 GHEILKKIEN 155 (801)
Q Consensus 146 G~dVL~kIe~ 155 (801)
|||||++|+.
T Consensus 155 G~dvl~~I~~ 164 (176)
T cd01924 155 GLDILRELKV 164 (176)
T ss_pred CHHHHHhhcC
Confidence 9999999975
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=6.5e-05 Score=83.76 Aligned_cols=152 Identities=18% Similarity=0.187 Sum_probs=117.6
Q ss_pred EEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCccc
Q 003712 11 MDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIY 90 (801)
Q Consensus 11 ~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~si~ 90 (801)
+.+..|+ .+--|.|+||.+-.|..++.|+.+|. .+|+++..|..|.+.+++|.||...-...+|.--|
T Consensus 103 wv~skGd-~~s~IAVs~~~sg~i~VvD~~~d~~q-----------~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEy 170 (558)
T KOG0882|consen 103 WVTSKGD-KISLIAVSLFKSGKIFVVDGFGDFCQ-----------DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEY 170 (558)
T ss_pred EecCCCC-eeeeEEeecccCCCcEEECCcCCcCc-----------cceecccccCceEEEEeeccccceeeccccceeEe
Confidence 3334443 44569999999999999999999996 78999999999999999999986433222321111
Q ss_pred C-----CCCCC--CCCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc-CCCCCC
Q 003712 91 E-----GKFPD--ESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGR 162 (801)
Q Consensus 91 g-----~~f~d--E~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~-~d~~g~ 162 (801)
+ .+|++ +++.++|. ..++.++..-....+.+|+++-.....|+.+..|||.|..|.+|++.|+.. ++....
T Consensus 171 Ws~e~~~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q 249 (558)
T KOG0882|consen 171 WSAEGPFQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQ 249 (558)
T ss_pred ecCCCcccCcccccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhc
Confidence 1 12333 36778887 778888777555667899999999999999999999999999999999987 677778
Q ss_pred ccccEEEEEeeec
Q 003712 163 LTVTVKIINCGEV 175 (801)
Q Consensus 163 P~~~I~I~~cg~l 175 (801)
+..++.|.++...
T Consensus 250 ~ks~y~l~~Velg 262 (558)
T KOG0882|consen 250 PKSPYGLMHVELG 262 (558)
T ss_pred cccccccceeehh
Confidence 8888888887543
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.94 E-value=0.0036 Score=71.51 Aligned_cols=113 Identities=19% Similarity=0.248 Sum_probs=70.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCcccCCCCCCCCCCC
Q 003712 22 RMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRL 101 (801)
Q Consensus 22 RIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~si~g~~f~dE~~~l 101 (801)
-|.||||.+.||.||.-|..+. |-+ ..--.-..+|-.+++.+|.=|+. .+...+..||..-
T Consensus 376 vi~IeLydd~AP~s~~yFRk~t-GL~--------~~~VG~L~v~F~~~d~~mFk~~~----------~~~k~LiPEN~P~ 436 (503)
T TIGR03268 376 VIEIELYDDNAPRSVWYFRKFT-GLK--------TKPVGRLPVHFAFKEMIMFKGNK----------ELAKGLIPENTPE 436 (503)
T ss_pred EEEEEEcccCCchHHHHHHHhc-CCc--------ccccceeEEEEEeCCeeEeccCc----------hhccccCCCCCCC
Confidence 3899999999999999999886 311 11111234444556654442322 2344566777666
Q ss_pred CCCCCceEEecccCCCCCCceEEEEccCC------C-CCCCCCcEEEEEEeCHHHHHHHHh
Q 003712 102 KHDRPGLLSMSIADRDTLGSQFIITFKAN------H-SLDRKYVVFGELVQGHEILKKIEN 155 (801)
Q Consensus 102 ~h~~~G~Lsma~~g~~~ngSqFfITL~~~------~-~LDg~~tVFGkVV~G~dVL~kIe~ 155 (801)
....+|.|+|.|.-....| ..=|-|.+. . .++ .-.|+|+||++|+.|++|..
T Consensus 437 ~~V~ag~IgvTN~a~k~~G-~IGVRl~d~defGPTGE~F~-gTNIiG~Vv~~~e~Lk~~Ke 495 (503)
T TIGR03268 437 DKVEAGVIGVTNQACKHVG-MIGVRLEDSDEFGPTGEPFS-GTNIIGRVVEGMERLKGLKE 495 (503)
T ss_pred CccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCcc-CcceEEEecCChhHhccccc
Confidence 6777999999886321111 222333332 2 233 35788999999999988765
No 31
>PRK00969 hypothetical protein; Provisional
Probab=96.54 E-value=0.0095 Score=68.36 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=70.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCcccCCCCCCCCCCC
Q 003712 22 RMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRL 101 (801)
Q Consensus 22 RIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~si~g~~f~dE~~~l 101 (801)
-|.||||.+.||.||.-|..+. |-+ ..--.-..+|-++++.+|.-|+. .+...+..||..-
T Consensus 379 vi~IeLydd~AP~s~~yFR~~t-GL~--------~~~VG~L~v~F~~~d~~lFk~~~----------~~~k~liPEN~P~ 439 (508)
T PRK00969 379 LIEIELYDDKAPRTVWYFRKVT-GLK--------TKPVGKLPVYFKYEDTYLFKGNI----------EYAKGLLPENTPE 439 (508)
T ss_pred EEEEEEcCcCCchHHHHHHHhc-CCc--------ccccceeEEEEEeCCeEEEccCh----------hhccccCCCCCCC
Confidence 3899999999999999999886 311 11111234454556655543332 2345566777777
Q ss_pred CCCCCceEEecccCCCCCCceEEEEccCCCCC------CCCCcEEEEEEeCHHHHHHHHh
Q 003712 102 KHDRPGLLSMSIADRDTLGSQFIITFKANHSL------DRKYVVFGELVQGHEILKKIEN 155 (801)
Q Consensus 102 ~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~L------Dg~~tVFGkVV~G~dVL~kIe~ 155 (801)
....+|.|+|.|.-....| ..=|-|.++..+ -..-.|+|+|| +++.|++|..
T Consensus 440 ~~V~ag~IgvTN~a~k~~G-~iGVR~~d~d~fGPTGE~F~gTNIIGrVv-~~e~Lk~lKe 497 (508)
T PRK00969 440 DKVKAGEIGVTNMAAKYKG-MIGVRLSDNDEFGPTGEPFEGTNIIGRVV-NLEKLKKLKE 497 (508)
T ss_pred CccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccCceeEEEec-ChHHhccccc
Confidence 7778999999886322111 222333333221 12457999999 9999998776
No 32
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=96.37 E-value=0.01 Score=58.24 Aligned_cols=107 Identities=20% Similarity=0.165 Sum_probs=57.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCc--eeeeCcCcCCCCCCCCcccCCCCCCCCC
Q 003712 22 RMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGS--MAEGGDFVKRDGTSGESIYEGKFPDESP 99 (801)
Q Consensus 22 RIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf--~iQgGd~~~~~g~gg~si~g~~f~dE~~ 99 (801)
.++.+|+.|.||+||+.|+++.= |.+..||-..-+. ||..+++.. .....||
T Consensus 9 ~~~A~l~~d~AP~Tcaa~~~~LP--------------~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN- 62 (147)
T PF12903_consen 9 SFTARLLDDKAPKTCAAFWEALP--------------LKGKVIHARWSGEEIWIPLPDFDP-----------FEPGREN- 62 (147)
T ss_dssp EEEEEE-TTTSHHHHHHHHHH----------------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-S-
T ss_pred EEEEEEcccCChHHHHHHHHhCC--------------CCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCc-
Confidence 47889999999999999999983 7777888776664 555566531 1122233
Q ss_pred CCCCCCCceEEec--cc---C--CC-CCCceEEEEccC------CCCCCCCCcEEEEEEeCHHHHHHHHhc
Q 003712 100 RLKHDRPGLLSMS--IA---D--RD-TLGSQFIITFKA------NHSLDRKYVVFGELVQGHEILKKIENV 156 (801)
Q Consensus 100 ~l~h~~~G~Lsma--~~---g--~~-~ngSqFfITL~~------~~~LDg~~tVFGkVV~G~dVL~kIe~~ 156 (801)
...|-..|-|++. .. + +. .+...+|+-.+. ..+|- -.+|++|++|++-|.++++.
T Consensus 63 ~T~~P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~--GN~FatI~egle~la~~~~~ 131 (147)
T PF12903_consen 63 HTVTPIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLP--GNHFATITEGLEELAEACRD 131 (147)
T ss_dssp EESS--TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE----EEEEEEEEESHHHHHHHHHH
T ss_pred CcccCCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccc--eeEEEEEcCCHHHHHHHHHH
Confidence 2333346666664 00 0 11 112233332222 22333 37999999999999888765
No 33
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.85 E-value=0.024 Score=65.05 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=66.6
Q ss_pred CceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCcccCCCCCC
Q 003712 17 GDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPD 96 (801)
Q Consensus 17 ~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~si~g~~f~d 96 (801)
++-+-.+.+||.++ ||..+++||.+.. .|+|. .-...+-+| +.+.+.|...+.
T Consensus 197 ~~IfTy~evE~~~~-~p~s~EH~la~~~-----------~G~~~----Vd~~tsTfi-----------~d~~L~g~~~p~ 249 (503)
T TIGR03268 197 DRIFTYVEVELDPN-APVSVEHFLALME-----------DGTFR----VDYRTSTFI-----------SDDSLRGLDKPE 249 (503)
T ss_pred CEEEEEEEEEEcCC-CChhHHHHHHHHh-----------CCeEE----EeeeecceE-----------ecccccCccCCc
Confidence 34445577887666 9999999999985 12221 000111111 122344555666
Q ss_pred CCCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHh
Q 003712 97 ESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIEN 155 (801)
Q Consensus 97 E~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~ 155 (801)
||+. --..|+|.+-|.|. .-...||.-.+-+. .--|+|+|+|+.|||+|+..+.
T Consensus 250 En~~--~R~rGtVTVRn~G~--G~G~VYIYredr~s-s~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 250 ENIE--KRRRGAVTVRNSGV--GEGRVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred cccC--cccceeEEEEeecc--CceeEEEEcCCCCC-CcccceeEEEecceeeeecccC
Confidence 6643 23489999988863 33567887776432 2249999999999999985443
No 34
>PRK00969 hypothetical protein; Provisional
Probab=95.80 E-value=0.023 Score=65.37 Aligned_cols=106 Identities=20% Similarity=0.209 Sum_probs=66.4
Q ss_pred CceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCcccCCCCCC
Q 003712 17 GDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPD 96 (801)
Q Consensus 17 ~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~si~g~~f~d 96 (801)
++-+-.+.+||.++ ||..+++||.+.. .|+|. .-...+-+| +.+.+.|...+.
T Consensus 200 ~~IfTy~eve~~~~-~p~s~EH~la~~~-----------~G~f~----Vd~~tstfI-----------~d~~L~g~~~p~ 252 (508)
T PRK00969 200 MKIFTYVEVELDPG-APKSVEHFLALLE-----------DGTFE----VDFETSTFI-----------ADDRLQGLKIPE 252 (508)
T ss_pred CEEEEEEEEEEcCC-CCchHHHHHHHHh-----------CCeEE----EeeeecceE-----------eeccccCccCCc
Confidence 34445577777766 9999999999985 22221 000111111 122344555666
Q ss_pred CCCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHH
Q 003712 97 ESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIE 154 (801)
Q Consensus 97 E~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe 154 (801)
||+.. -..|+|.+-+.|. .....||.-.+-+. .--|+|+|+|+.|||+|+..+
T Consensus 253 En~~~--R~~GtVTVRt~G~--g~G~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~ 305 (508)
T PRK00969 253 ENFEP--RRRGTVTVRTAGV--GVGKVYIYREDRPS-SLSHTVVGRVTHGIELIDFAK 305 (508)
T ss_pred cccCc--cccceEEEEeecc--CceeEEEECCCCCC-CccceeEEEEecceeeeeccc
Confidence 66432 3489999988863 34567888776432 224999999999999998544
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.048 Score=60.59 Aligned_cols=112 Identities=18% Similarity=0.272 Sum_probs=64.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc-CCCCCCCCCCCccccCCeEEEeecCc-eee-eCcCcCCCCCCCCcccCCCCCCCCC
Q 003712 23 MVFELFSDIAPKTAENFRALCTG-EKGIGPRTGKPLHYKGSFFHRVIKGS-MAE-GGDFVKRDGTSGESIYEGKFPDESP 99 (801)
Q Consensus 23 IvIELf~d~aP~t~~nFl~Lc~G-~~g~g~~~~k~~~Y~Gs~f~RI~kgf-~iQ-gGd~~~~~g~gg~si~g~~f~dE~~ 99 (801)
|.||||.+.||.++.-|..+..- ++.+| ...+|-+.++. ||. -|+ ..++..+..||.
T Consensus 378 ieIELyed~APrSv~yFRr~t~l~~kpVG----------kL~Vhfay~d~~~vmfegn----------~~~~K~llPEN~ 437 (512)
T COG4070 378 IEIELYEDRAPRSVWYFRRSTGLKTKPVG----------KLKVHFAYDDTYLVMFEGN----------AVLAKGLLPENT 437 (512)
T ss_pred EEEEecCCCCchhhHHHHhhccccccccc----------ceEEEEEeCCceEEEEcCC----------hHHhccCCCCCC
Confidence 89999999999999999987621 22222 23455555553 221 121 222344555555
Q ss_pred CCCCCCCceEEecccCCCCCCceEEEEccCCCCC------CCCCcEEEEEEeCHHHHHHHHh
Q 003712 100 RLKHDRPGLLSMSIADRDTLGSQFIITFKANHSL------DRKYVVFGELVQGHEILKKIEN 155 (801)
Q Consensus 100 ~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~L------Dg~~tVFGkVV~G~dVL~kIe~ 155 (801)
.--...+|.|++.|......| ..-+-|.+...+ -....|+|+|++|.+-|..|+.
T Consensus 438 P~d~Ve~g~iGvTN~a~r~~G-mIGVRL~dsdefGPTGE~Fe~TNiIGrIveg~e~l~~ike 498 (512)
T COG4070 438 PADTVEAGEIGVTNQAARHMG-MIGVRLEDSDEFGPTGEKFEGTNIIGRIVEGPERLIGIKE 498 (512)
T ss_pred chhheecccccccccchhccc-eeEEEeccccccCCCCCccccceeehhhccChHHhccccc
Confidence 544555666666554221111 122333333222 2346899999999999998876
No 36
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.053 Score=60.23 Aligned_cols=107 Identities=23% Similarity=0.316 Sum_probs=67.4
Q ss_pred CCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCcccCCCCC
Q 003712 16 DGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFP 95 (801)
Q Consensus 16 g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~si~g~~f~ 95 (801)
|+..+-.+.|||-.+ +|+.+++|++|.. .| +.=..+..+-+| +.+.+.+.+++
T Consensus 198 gdrifTy~eve~s~n-sP~saEH~lalme--dG-------------~lri~~~tntfi-----------s~~~lq~~~~~ 250 (512)
T COG4070 198 GDRIFTYFEVELSRN-SPKSAEHFLALME--DG-------------TLRIDVTTNTFI-----------SDDTLQEEKVP 250 (512)
T ss_pred CCEEEEEEEEEeCCC-CchhHHHHHHHhh--cc-------------eEEEEEecccee-----------eccccccccCC
Confidence 344456678888776 8999999999874 21 111111122222 12234455666
Q ss_pred CCCCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHH
Q 003712 96 DESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIE 154 (801)
Q Consensus 96 dE~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe 154 (801)
.||+.+. .+|.|.+-|.|- .....||.-.+-+.- -.|+|+|+|++||++|+-.+
T Consensus 251 ~en~d~R--erG~iTvRn~Gv--geGrvYIyRedR~ss-~sHnvVGrV~eGiELid~a~ 304 (512)
T COG4070 251 EENFDLR--ERGAITVRNVGV--GEGRVYIYREDRPSS-LSHNVVGRVIEGIELIDLAE 304 (512)
T ss_pred hhhhhhh--hcceEEEEeeec--ccceEEEEecCCCCc-cccceeeeeecceEEEEecc
Confidence 7776654 389999988763 345678876653221 24899999999999988543
No 37
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=93.11 E-value=0.00011 Score=83.27 Aligned_cols=24 Identities=8% Similarity=0.165 Sum_probs=17.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 003712 23 MVFELFSDIAPKTAENFRALCTGE 46 (801)
Q Consensus 23 IvIELf~d~aP~t~~nFl~Lc~G~ 46 (801)
+.|.|-..+.-..|.+++.+|..+
T Consensus 476 LKmkip~~q~~elc~mii~cc~Qe 499 (739)
T KOG2140|consen 476 LKMKIPESQEKELCNMIIDCCAQE 499 (739)
T ss_pred HhccCCchhhHHHHHHHHHHhhhH
Confidence 556666666777899999999754
No 38
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=91.14 E-value=0.54 Score=44.88 Aligned_cols=103 Identities=22% Similarity=0.312 Sum_probs=53.5
Q ss_pred EEEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCccc
Q 003712 11 MDVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIY 90 (801)
Q Consensus 11 ~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~si~ 90 (801)
|.+++|+ ..|.++|+.. .|++.|++++= .+.....|.+-.++.+ +
T Consensus 3 I~i~i~~---~~~~a~L~d~---~ta~~~~~~LP-------lt~~~~~~g~E~y~~~-p--------------------- 47 (120)
T PF04126_consen 3 IKITIGG---QEIEAELNDS---PTARAFAAQLP-------LTVTMNDWGNEKYFSL-P--------------------- 47 (120)
T ss_dssp EEEEETT---EEEEEEEETT---HHHHHHHHC-S-------EEEEEEECTTEEEEE--S---------------------
T ss_pred EEEEECC---EEEEEEECCC---HHHHHHHHhCC-------eEEEHHHCCceEEEeC-C---------------------
Confidence 5667776 4489999998 88999999872 1111222321111111 0
Q ss_pred CCCCC-CCCCCCCCCCCceEEecccCCCCCCceEEEEccCCC-------CCCCCCcEEEEEEeCHHHHHHHHh
Q 003712 91 EGKFP-DESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANH-------SLDRKYVVFGELVQGHEILKKIEN 155 (801)
Q Consensus 91 g~~f~-dE~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~-------~LDg~~tVFGkVV~G~dVL~kIe~ 155 (801)
..+. +|... .....|-|++-.. +..|.|-+++.+ .+-...++||+|+.|+++|+.|..
T Consensus 48 -~~l~~~~~~~-~~~~~GDi~Yw~p-----g~~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 48 -LKLPTEENPR-SSVEAGDIAYWPP-----GGALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp ------SSSEE-SSB-TTEEEEECC-----CTEEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred -CCCCcccCcc-ccccCceEEEeCC-----CCEEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 0111 12222 2235777777322 345666665553 455668999999999999988765
No 39
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=91.00 E-value=0.3 Score=47.68 Aligned_cols=10 Identities=10% Similarity=0.159 Sum_probs=4.4
Q ss_pred cEEEEEEeCH
Q 003712 138 VVFGELVQGH 147 (801)
Q Consensus 138 tVFGkVV~G~ 147 (801)
..||.-|.|.
T Consensus 22 ~a~~~~~rCQ 31 (177)
T KOG3116|consen 22 SAVGSSARCQ 31 (177)
T ss_pred hhcccchhHH
Confidence 3455444333
No 40
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.56 E-value=0.1 Score=54.88 Aligned_cols=28 Identities=39% Similarity=0.526 Sum_probs=15.3
Q ss_pred ccCcCCCcchhhhhcccccCCCCCCCCC
Q 003712 202 KKGKHKKSSRNKRRKRRRYSSSDSETSS 229 (801)
Q Consensus 202 rk~KkKKs~K~k~kKkr~~~ss~s~s~s 229 (801)
+..+.|+..++.++++++...+++++++
T Consensus 169 k~~~~k~t~s~rKkkkRrrd~SdssSDS 196 (306)
T KOG2985|consen 169 KGSSVKKTSSVRKKKKRRRDESDSSSDS 196 (306)
T ss_pred ccCccccccchhhhhhhccccccccccc
Confidence 3345555566666666665555554444
No 41
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=89.78 E-value=3.7 Score=47.85 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=16.5
Q ss_pred CCCCCCceEEeccc---CCCCCCceEEEEccCC
Q 003712 101 LKHDRPGLLSMSIA---DRDTLGSQFIITFKAN 130 (801)
Q Consensus 101 l~h~~~G~Lsma~~---g~~~ngSqFfITL~~~ 130 (801)
+.|..--.|-|+.. +..+-...|.|+|...
T Consensus 371 I~f~EIS~V~fsR~~~s~t~trtFD~ei~lk~g 403 (615)
T KOG0526|consen 371 IRFEEISSVNFSRSGLSGTSTRTFDFEITLKSG 403 (615)
T ss_pred eeccceeeEEEEeccCCccceeeEEEEEEEcCC
Confidence 33444444445444 3444567788888753
No 42
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=87.50 E-value=3.8 Score=42.59 Aligned_cols=12 Identities=8% Similarity=-0.017 Sum_probs=6.0
Q ss_pred CCCCCCCCccce
Q 003712 779 SSGSPDGRKGLV 790 (801)
Q Consensus 779 ~~~~~~~~~~~~ 790 (801)
..-++++.++.+
T Consensus 244 ~pk~~e~e~~~s 255 (256)
T KOG4207|consen 244 PPKSREEEGSPS 255 (256)
T ss_pred CCCCcccccCCC
Confidence 444555555443
No 43
>PHA03001 putative virion core protein; Provisional
Probab=86.18 E-value=2 Score=41.18 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=40.0
Q ss_pred cEEEEEEEeCCceeeeEEEEEcCCCChH------HHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCc
Q 003712 7 LLVFMDVSIDGDPVERMVFELFSDIAPK------TAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGS 71 (801)
Q Consensus 7 p~V~~Dts~g~~~~GRIvIELf~d~aP~------t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf 71 (801)
.-|||++..|. -+|.|++-...||. ++++||++.. |-..-+.++|+-++++.
T Consensus 4 vNIfLEsd~gr---vkl~~~~~~~~~~~~~~~~ka~~~fl~~L~----------kYi~v~eStFylvvrd~ 61 (132)
T PHA03001 4 VNIFLETDAGR---VKLAIENPDKVCATKAEMRKAINKFLELLK----------KYIHVDKSTFYLVVKDK 61 (132)
T ss_pred eEEEEeccCCc---eEEEEcCCCccccccchHHHHHHHHHHHHH----------hhEEecccEEEEEEecC
Confidence 45899999887 23677777777775 7789999984 45567899999999884
No 44
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=84.92 E-value=0.25 Score=54.94 Aligned_cols=112 Identities=14% Similarity=0.069 Sum_probs=69.5
Q ss_pred HHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCcccCCCCCCCCCCCCCCCCceEEeccc
Q 003712 35 TAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIA 114 (801)
Q Consensus 35 t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~si~g~~f~dE~~~l~h~~~G~Lsma~~ 114 (801)
.+.+||-+. |++..|.+||...+|.+.+=...+.-.+-..+.+ .|++.|...+|.+|+......+|+..-+|.|
T Consensus 69 ViK~FMiQg-GDfs~gnGtGGeSIYG~~FdDEnF~lKHdrpflL--SMAN~GpNTNgSQFFITT~p~PHLdGkHVVF--- 142 (372)
T KOG0546|consen 69 VIKNFMIQG-GDFSEGNGTGGESIYGEKFDDENFELKHDRPFLL--SMANRGPNTNGSQFFITTVPTPHLDGKHVVF--- 142 (372)
T ss_pred eeecceeec-cccccCCCCCcccccccccccccceeccCcchhh--hhhcCCCCCCCcceEEeCCCCCCcCCceeEE---
Confidence 357898777 7888888899999998775554433333333333 3777778888888888777777776666666
Q ss_pred CCCCCCceEEEEccCCCCCCC-CCcEEEEEEeCHHHHHH
Q 003712 115 DRDTLGSQFIITFKANHSLDR-KYVVFGELVQGHEILKK 152 (801)
Q Consensus 115 g~~~ngSqFfITL~~~~~LDg-~~tVFGkVV~G~dVL~k 152 (801)
|....|-...-+|+.+..-.. +.++-..|.+|.+++..
T Consensus 143 GqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 143 GQVIKGKEVVREIENLETDEESKPLADVVISDCGELVKK 181 (372)
T ss_pred eeEeechhHHHHHhccccccCCCCccceEeccccccccc
Confidence 222333333334444332222 45555556678877665
No 45
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=82.27 E-value=3.3 Score=39.79 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=37.2
Q ss_pred cEEEEEEEeCCceeeeEEEEEcCCCChH-------HHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCc
Q 003712 7 LLVFMDVSIDGDPVERMVFELFSDIAPK-------TAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGS 71 (801)
Q Consensus 7 p~V~~Dts~g~~~~GRIvIELf~d~aP~-------t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf 71 (801)
.-|||++..|. -+|.|++-...|+. +++.||+... |-..-+.++|+-++++.
T Consensus 4 vNIfLEsd~gr---vkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~----------kyI~veeStFylvvrd~ 62 (130)
T PF06138_consen 4 VNIFLESDSGR---VKLRYEEPDCKCARTGCEARRAVKHFLSVLK----------KYIDVEESTFYLVVRDK 62 (130)
T ss_pred eEEEEeccCce---eEEEEeCCCcccccccchHHHHHHHHHHHHH----------hhEEecccEEEEEEecC
Confidence 35899998876 22555655655544 5889999985 34556889999999884
No 46
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=78.97 E-value=3.3 Score=48.60 Aligned_cols=12 Identities=8% Similarity=0.193 Sum_probs=5.8
Q ss_pred CccccCCeEEEe
Q 003712 56 PLHYKGSFFHRV 67 (801)
Q Consensus 56 ~~~Y~Gs~f~RI 67 (801)
.+||+.++|..+
T Consensus 219 ~~yf~ds~~~ql 230 (757)
T KOG4368|consen 219 NGYFDDSIIQQL 230 (757)
T ss_pred cCchhHHHHHHh
Confidence 445555544433
No 47
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=73.95 E-value=2.3 Score=44.48 Aligned_cols=6 Identities=17% Similarity=0.495 Sum_probs=2.4
Q ss_pred chhHhh
Q 003712 256 SDDRRK 261 (801)
Q Consensus 256 ~~~krk 261 (801)
..++++
T Consensus 84 k~kkkk 89 (225)
T PF10500_consen 84 KRKKKK 89 (225)
T ss_pred hhhhhh
Confidence 334443
No 48
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=62.50 E-value=1.2 Score=49.63 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=27.1
Q ss_pred EEEeCCceeeeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEe
Q 003712 12 DVSIDGDPVERMVFELFSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRV 67 (801)
Q Consensus 12 Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI 67 (801)
.+.+.|..-|.|.-+|.+ +|| ++|....|.+||...+|...+-..+
T Consensus 42 qKOGegyy~nt~fhrlvp--------~f~--~Qggdp~~~gtGgesiyg~~fadE~ 87 (439)
T KOG0885|consen 42 QLCLEGYYDNTEFHRLVP--------GFL--VQGGDPTGTGTGGESIYGRPFADEF 87 (439)
T ss_pred HHHHhccccCceeeeecc--------chh--cccCCCCCCCCCccccccccchhhc
Confidence 333444444445555544 465 4456666778888888887754444
No 49
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=58.62 E-value=4.6 Score=42.26 Aligned_cols=101 Identities=20% Similarity=0.093 Sum_probs=55.2
Q ss_pred HHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCcccCCCCCCC-----CCCCCCCCCceEEec
Q 003712 38 NFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDE-----SPRLKHDRPGLLSMS 112 (801)
Q Consensus 38 nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~si~g~~f~dE-----~~~l~h~~~G~Lsma 112 (801)
.||+.. |++.-+.+||...+|...+=...+...+-..|.+. +.+.|...+|.+|..- -+..+|.-.|.|
T Consensus 192 ~fmcqg-gdftn~ngtggksiygkkfddenf~lkht~pgtls--mansgantngsqffict~ktdwldgkhvvfghv--- 265 (298)
T KOG0111|consen 192 KFMCQG-GDFTNGNGTGGKSIYGKKFDDENFTLKHTMPGTLS--MANSGANTNGSQFFICTEKTDWLDGKHVVFGHV--- 265 (298)
T ss_pred hhhccC-CccccCCCCCCcccccccccccceeeecCCCceee--ccccCCCCCCceEEEEecccccccCceeEEeee---
Confidence 565444 45555677777878854332222222233334332 4555666666666443 344455544544
Q ss_pred ccCCCCCCceEEEEccCCCCCCCCCcEEEEEEeCHHH
Q 003712 113 IADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEI 149 (801)
Q Consensus 113 ~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dV 149 (801)
..|....-.++.+..-+|+.....+|++|.|+
T Consensus 266 -----~eg~~vvrq~e~qgsksgkp~qkv~i~~cge~ 297 (298)
T KOG0111|consen 266 -----VEGMNVVRQVEQQGSKSGKPQQKVKIVECGEI 297 (298)
T ss_pred -----cchHHHHHHHHhccCCCCCcceEEEEEecccc
Confidence 33444444455667777877777778877654
No 50
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=57.61 E-value=9.3 Score=47.20 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=25.3
Q ss_pred CCCCCceEEEE-----------ccCCCCCCCCCcEE---EEEEeCHHH
Q 003712 116 RDTLGSQFIIT-----------FKANHSLDRKYVVF---GELVQGHEI 149 (801)
Q Consensus 116 ~~~ngSqFfIT-----------L~~~~~LDg~~tVF---GkVV~G~dV 149 (801)
.+.+|.|..|+ |...|.||...++| |.|+.+|..
T Consensus 1274 FHP~g~eVIINSEIwD~RTF~lLh~VP~Ldqc~VtFNstG~VmYa~~~ 1321 (1516)
T KOG1832|consen 1274 FHPSGNEVIINSEIWDMRTFKLLHSVPSLDQCAVTFNSTGDVMYAMLN 1321 (1516)
T ss_pred ccCCCceEEeechhhhhHHHHHHhcCccccceEEEeccCccchhhhhh
Confidence 35567777776 45579999988888 788888773
No 51
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=53.98 E-value=19 Score=42.17 Aligned_cols=7 Identities=14% Similarity=0.007 Sum_probs=4.6
Q ss_pred HHHHHHh
Q 003712 37 ENFRALC 43 (801)
Q Consensus 37 ~nFl~Lc 43 (801)
..||++.
T Consensus 38 ~QflQ~h 44 (653)
T KOG2548|consen 38 IQFLQAH 44 (653)
T ss_pred HHHHHHh
Confidence 4677766
No 52
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=53.07 E-value=15 Score=34.15 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=15.7
Q ss_pred CcEEEEEEeCHHHHHHHHh
Q 003712 137 YVVFGELVQGHEILKKIEN 155 (801)
Q Consensus 137 ~tVFGkVV~G~dVL~kIe~ 155 (801)
..|+|+||++|+.|..+..
T Consensus 99 VNvIGrIv~~lE~lk~v~d 117 (126)
T COG2164 99 VNVIGRIVKNLELLKSVDD 117 (126)
T ss_pred HHHHHHHHhhHHhhhcccC
Confidence 3589999999999987654
No 53
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.98 E-value=4.5 Score=45.20 Aligned_cols=143 Identities=12% Similarity=0.045 Sum_probs=82.1
Q ss_pred CCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcC----CCCCCCC-cccCCCCCCC------
Q 003712 29 SDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVK----RDGTSGE-SIYEGKFPDE------ 97 (801)
Q Consensus 29 ~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~----~~g~gg~-si~g~~f~dE------ 97 (801)
.+.-|..|..||.-+.... .-||+|+....|.+|+++....+.+ |....-| .|..+-++.-
T Consensus 73 ~e~pPL~~iefL~rv~dv~--------~eyFg~~s~~~Ik~N~~vv~ell~emiDnGfpl~tE~NiLke~i~pps~l~~~ 144 (418)
T KOG2740|consen 73 VETPPLMVIEFLHRVVDVL--------LEYFGGLSESKIKDNVVVVYELLDEMIDNGFPLVTEPNILKELIPPPSFLSKK 144 (418)
T ss_pred ccCCChhHHHHHHHHHHHH--------HHHhcccCHhHhhcceeeHHHHHHHHHHcCCCcccChhHHHhhcCChHHHHHH
Confidence 3445999999998775322 4578888888888887554433221 1100000 0100000000
Q ss_pred ----------CCCCCCCCCceEEecccCCCCCCceEEEEccC----CCCCCCCCcEEEEEEeCHHHHHHHHhc-----CC
Q 003712 98 ----------SPRLKHDRPGLLSMSIADRDTLGSQFIITFKA----NHSLDRKYVVFGELVQGHEILKKIENV-----GD 158 (801)
Q Consensus 98 ----------~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~----~~~LDg~~tVFGkVV~G~dVL~kIe~~-----~d 158 (801)
...|+....-+|=|...+......+|||.+-. .-.-+ .-+|||.|-.-+|+..+|..+ .-
T Consensus 145 ~~svTg~~n~~~~lPtg~~s~VPWR~~~~Ky~nNE~yvdvlEeidai~~k~-gslv~~eI~g~vd~~~qLsgmPdltlsl 223 (418)
T KOG2740|consen 145 FNSVTGNSNVSDTLPTGALSNVPWRTAGVKYTNNEAYVDVLEEIDAIVDKK-GSLVFGEIQGIVDVCSQLSGMPDLTLSL 223 (418)
T ss_pred HhhhhccccccccCCCcccccccccccCcccccchhhhhhhheeheEecCC-CCEEEEEEEEEEEEEEeecCCCceEEEc
Confidence 11233344445556666766677888886532 12222 349999988778887777765 22
Q ss_pred CCCCccccEEEEEeeecccccc
Q 003712 159 EEGRLTVTVKIINCGEVSEDKK 180 (801)
Q Consensus 159 ~~g~P~~~I~I~~cg~l~~~~k 180 (801)
.++..+.++.+..|-.+..-..
T Consensus 224 ~np~~L~dvsfHpcVr~krwe~ 245 (418)
T KOG2740|consen 224 NNPRLLGDVSFHPCVRYKRWES 245 (418)
T ss_pred cCccccCCcccccceeeccccc
Confidence 4577777888888877754433
No 54
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]
Probab=50.05 E-value=36 Score=36.22 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=30.0
Q ss_pred EEEEEeCCceeee-EEEEEcCCCChHHHHHHHHHh
Q 003712 10 FMDVSIDGDPVER-MVFELFSDIAPKTAENFRALC 43 (801)
Q Consensus 10 ~~Dts~g~~~~GR-IvIELf~d~aP~t~~nFl~Lc 43 (801)
++++..-+.++|+ ++|.++...||..|..|++|.
T Consensus 72 ~w~i~w~~r~~GT~avVGIaTk~Aplha~gy~aLl 106 (242)
T KOG3953|consen 72 AWEIAWPNRQRGTHAVVGIATKVAPLHAVGYTALL 106 (242)
T ss_pred EEEEEecCCccCCcceEEEEcccCchhhhHHHHHh
Confidence 5677777777888 899999999999999999998
No 55
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=48.79 E-value=24 Score=38.22 Aligned_cols=93 Identities=18% Similarity=0.290 Sum_probs=51.3
Q ss_pred eeeeEEEEEcCCCChHHHHHHHHHhc--cCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCcccCCCCCC
Q 003712 19 PVERMVFELFSDIAPKTAENFRALCT--GEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPD 96 (801)
Q Consensus 19 ~~GRIvIELf~d~aP~t~~nFl~Lc~--G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~si~g~~f~d 96 (801)
.+|+|.+.||+..-+...+.-+.|+. |++ ..-|-|+.|..-.- -+..+...|..+.|..+|.|
T Consensus 165 ~lgrld~kl~a~ae~dn~kaa~rl~sdmgef--------fmp~pg~rinq~~~-------~l~~~g~~g~asyyevkf~d 229 (297)
T PF07174_consen 165 VLGRLDLKLFASAEPDNTKAAVRLASDMGEF--------FMPYPGTRINQETT-------PLDANGMPGSASYYEVKFTD 229 (297)
T ss_pred EeccccccccccccCChHHHHHHHhccccce--------eccCCCcccccccc-------ccccCCcccceeEEEEEecc
Confidence 35999999999988888888888874 222 22345554432211 11111122334566777888
Q ss_pred CCCCCCCCCCceEEeccc-CCCC-CCceEEEE
Q 003712 97 ESPRLKHDRPGLLSMSIA-DRDT-LGSQFIIT 126 (801)
Q Consensus 97 E~~~l~h~~~G~Lsma~~-g~~~-ngSqFfIT 126 (801)
.+......-.|+|+-... +.+. ..-.|||+
T Consensus 230 ~~kp~gqiw~~vvg~p~~~~~~~~~~~rwfvv 261 (297)
T PF07174_consen 230 ANKPNGQIWAGVVGSPVAPGTPRGTPQRWFVV 261 (297)
T ss_pred CCCCCCceEEEeecCcCCCCCCCCCCceEEEE
Confidence 765444444666654322 2222 23446665
No 56
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.63 E-value=55 Score=38.02 Aligned_cols=11 Identities=18% Similarity=0.003 Sum_probs=6.4
Q ss_pred ccCCeEEEeec
Q 003712 59 YKGSFFHRVIK 69 (801)
Q Consensus 59 Y~Gs~f~RI~k 69 (801)
+.|+.+..|..
T Consensus 16 ~~g~~~~~ve~ 26 (483)
T KOG2236|consen 16 SNGVKEDQVES 26 (483)
T ss_pred hccccccccCc
Confidence 56666665544
No 57
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]
Probab=37.56 E-value=13 Score=44.75 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=7.1
Q ss_pred CCCCCCcEEEEEE
Q 003712 132 SLDRKYVVFGELV 144 (801)
Q Consensus 132 ~LDg~~tVFGkVV 144 (801)
.++-..+|||.|.
T Consensus 679 k~sln~~IfgD~d 691 (883)
T KOG2138|consen 679 KVSLNQTIFGDVD 691 (883)
T ss_pred cchHHHHHhccch
Confidence 3333456676665
No 58
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=37.09 E-value=85 Score=33.25 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=25.3
Q ss_pred CCCceEEEEccCCCCCCCCCcEEEEEEeCHHHHHHHHhc
Q 003712 118 TLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV 156 (801)
Q Consensus 118 ~ngSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~kIe~~ 156 (801)
.+|..|||.++.... ++.|-|=-.|+=-|+|..|+..
T Consensus 81 k~gn~FyliIDr~~~--~enV~fLn~VdE~DLl~l~e~~ 117 (218)
T PF14283_consen 81 KSGNTFYLIIDRDEE--GENVYFLNQVDEADLLALMEEE 117 (218)
T ss_pred cCCCEEEEEEecCCC--cceEEEeccCCHHHHHHHHhcc
Confidence 467788888876554 3357777777777787766653
No 59
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=34.60 E-value=36 Score=40.81 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=11.0
Q ss_pred EEcCCCChHHHHHHHHHhccC
Q 003712 26 ELFSDIAPKTAENFRALCTGE 46 (801)
Q Consensus 26 ELf~d~aP~t~~nFl~Lc~G~ 46 (801)
-||.+ .-+.|++-|.|+
T Consensus 693 iLFSN----ikhlfFq~c~gE 709 (1001)
T COG5406 693 ILFSN----IKHLFFQECNGE 709 (1001)
T ss_pred Eeecc----chhheeccCCce
Confidence 35554 346788888875
No 60
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=31.64 E-value=20 Score=38.52 Aligned_cols=8 Identities=25% Similarity=0.841 Sum_probs=3.9
Q ss_pred ceEEEEcc
Q 003712 121 SQFIITFK 128 (801)
Q Consensus 121 SqFfITL~ 128 (801)
+|++|.+.
T Consensus 116 TQylir~r 123 (303)
T KOG3064|consen 116 TQYLIRMR 123 (303)
T ss_pred HHHHHHHH
Confidence 45555443
No 61
>COG4925 Uncharacterized conserved protein [Function unknown]
Probab=31.39 E-value=1.6e+02 Score=29.03 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=19.8
Q ss_pred CceEEEEccCCCCCCCCCcEEEEEEeCHHHHHH
Q 003712 120 GSQFIITFKANHSLDRKYVVFGELVQGHEILKK 152 (801)
Q Consensus 120 gSqFfITL~~~~~LDg~~tVFGkVV~G~dVL~k 152 (801)
-..|+--+.- -+...-+|+|+.|++.|..
T Consensus 127 laiF~k~f~y----s~~L~~LGkidsG~e~i~~ 155 (166)
T COG4925 127 LAIFYKRFGY----SGGLYELGKIDSGGEHIKN 155 (166)
T ss_pred EEEEEccccc----cccceecceeecchHhhcC
Confidence 3445554443 3456789999999998763
No 62
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=30.40 E-value=21 Score=40.48 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=45.0
Q ss_pred HHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeee-CcCcCCCCCCCCcccCCCCCCCC-----CCCCCCCCce
Q 003712 35 TAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEG-GDFVKRDGTSGESIYEGKFPDES-----PRLKHDRPGL 108 (801)
Q Consensus 35 t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQg-Gd~~~~~g~gg~si~g~~f~dE~-----~~l~h~~~G~ 108 (801)
.+.||| ++|....|.++|.+.+|..-+-.....++.--| |.+ .|++.|...+|.+|+..+ +..+|...|-
T Consensus 322 sIrnFm--iQGGDPTGTG~GGeSiWgKpFkDEf~~~l~H~gRGvl--SMANsGpnTNgSQFFItyrsckhLd~KHTIFGr 397 (518)
T KOG0883|consen 322 SIRNFM--IQGGDPTGTGRGGESIWGKPFKDEFCSNLSHDGRGVL--SMANSGPNTNGSQFFITYRSCKHLDNKHTIFGR 397 (518)
T ss_pred HHHHHe--eeCCCCCCCCCCCccccCCccccccCCCCCcCCcceE--eeccCCCCCCCceEEEEecchhhccccceeeee
Confidence 455665 456777788888888888766666666653332 222 367778888888887664 4455554444
Q ss_pred E
Q 003712 109 L 109 (801)
Q Consensus 109 L 109 (801)
|
T Consensus 398 v 398 (518)
T KOG0883|consen 398 V 398 (518)
T ss_pred e
Confidence 4
No 63
>COG5226 CEG1 mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=28.74 E-value=1.8e+02 Score=32.38 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=21.4
Q ss_pred CCCCCCCCCceEEecccCC---------------CCCCceEEEEccC
Q 003712 98 SPRLKHDRPGLLSMSIADR---------------DTLGSQFIITFKA 129 (801)
Q Consensus 98 ~~~l~h~~~G~Lsma~~g~---------------~~ngSqFfITL~~ 129 (801)
...|+|...|+|-.....+ ..|...|...|..
T Consensus 213 ip~L~HgnDGLIFTp~~~PY~~Gkd~~lLKWKP~~~NTiDF~lvl~~ 259 (404)
T COG5226 213 IPELKHGNDGLIFTPADEPYSVGKDGALLKWKPASLNTIDFRLVLHK 259 (404)
T ss_pred cccccCCCCceEeccCCCCcccCccceeeecCccccCceeeeeeecc
Confidence 4578998899987665422 2366778777754
No 64
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=28.49 E-value=20 Score=35.54 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=21.2
Q ss_pred eEEecccCCCCCCceEEEEccCCCCCCC
Q 003712 108 LLSMSIADRDTLGSQFIITFKANHSLDR 135 (801)
Q Consensus 108 ~Lsma~~g~~~ngSqFfITL~~~~~LDg 135 (801)
+.++...+....|..+||||+++.|+-.
T Consensus 56 v~Al~~ag~~a~Gat~yVTLEPCsH~Gr 83 (146)
T COG0117 56 VCALRMAGEAARGATAYVTLEPCSHYGR 83 (146)
T ss_pred HHHHHHcCcccCCCEEEEEecCcccCCC
Confidence 3344444667889999999999988665
No 65
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=27.64 E-value=33 Score=40.46 Aligned_cols=8 Identities=25% Similarity=0.239 Sum_probs=3.9
Q ss_pred HHHHHHHH
Q 003712 35 TAENFRAL 42 (801)
Q Consensus 35 t~~nFl~L 42 (801)
.|+.|.+.
T Consensus 179 ~~e~F~~~ 186 (615)
T KOG0526|consen 179 KVEAFYEN 186 (615)
T ss_pred HHHHHHHH
Confidence 44555543
No 66
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=27.26 E-value=4.4e+02 Score=26.53 Aligned_cols=88 Identities=18% Similarity=0.388 Sum_probs=0.0
Q ss_pred EEEEEcCC--CChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCcccCCCCCCCCCC
Q 003712 23 MVFELFSD--IAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDESPR 100 (801)
Q Consensus 23 IvIELf~d--~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~si~g~~f~dE~~~ 100 (801)
|.||+|+. .-|.|++.||+.+....|+ .-.+|||-.+......| +.....
T Consensus 1 iqieIfP~R~L~peTtEklLN~l~~i~GI-------------------~R~vi~Gp~LPk~VpyG---------Pa~G~p 52 (153)
T PF02505_consen 1 IQIEIFPHRLLKPETTEKLLNELYSIEGI-------------------RRVVIHGPRLPKTVPYG---------PARGTP 52 (153)
T ss_pred CcEEEechhcCCHHHHHHHHHHHhccCCE-------------------EEEEEECCCCCCCCCCC---------CCCCCc
Q ss_pred CCCCCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEE---eC-HHHHHHHHhc
Q 003712 101 LKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELV---QG-HEILKKIENV 156 (801)
Q Consensus 101 l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV---~G-~dVL~kIe~~ 156 (801)
..|..+-+|-+ .|.++-. .+-.|.|+ +. .+++++|+.+
T Consensus 53 v~h~~Rk~I~V-------~g~~veL-----------~V~vGri~lele~~~~~ie~I~~i 94 (153)
T PF02505_consen 53 VNHPDRKVINV-------GGEEVEL-----------TVKVGRIILELEDEEDVIEKIREI 94 (153)
T ss_pred CCCCcceEEEE-------CCEEEEE-----------EEEEeEEEEEecCcHHHHHHHHHH
No 67
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=26.22 E-value=41 Score=39.96 Aligned_cols=52 Identities=13% Similarity=0.020 Sum_probs=35.8
Q ss_pred cCCCChHHHHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCc
Q 003712 28 FSDIAPKTAENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFV 79 (801)
Q Consensus 28 f~d~aP~t~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~ 79 (801)
..+++|..|-.|...-.=..|+.-..+-..|-.||++|.+..|.+|..|.-.
T Consensus 589 eneitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TN 640 (752)
T KOG0670|consen 589 ENEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTN 640 (752)
T ss_pred cccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCc
Confidence 3467899999998653322333222233457789999999999999988643
No 68
>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]
Probab=26.14 E-value=25 Score=36.80 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=18.7
Q ss_pred CcEE-EEEEEeCCceeeeEEEEEcCCCChHHHHHHHHHh
Q 003712 6 SLLV-FMDVSIDGDPVERMVFELFSDIAPKTAENFRALC 43 (801)
Q Consensus 6 np~V-~~Dts~g~~~~GRIvIELf~d~aP~t~~nFl~Lc 43 (801)
-|+| |+|+..|. |++|.+.- ++ ++++|+...
T Consensus 74 ~P~l~~~D~~~~~-----i~ME~~~g-~~-~vk~~i~~~ 105 (229)
T KOG3087|consen 74 APRLIFIDTYGGQ-----IYMEFIDG-AS-TVKDFILST 105 (229)
T ss_pred CceEEEEecCCCe-----EEEEeccc-hh-HHHHHHHHH
Confidence 3554 45666655 99998843 33 556666543
No 69
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.85 E-value=90 Score=34.00 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=17.0
Q ss_pred CCCcEEEEEEEeC-CceeeeEEEEEcCC
Q 003712 4 KKSLLVFMDVSID-GDPVERMVFELFSD 30 (801)
Q Consensus 4 ~~np~V~~Dts~g-~~~~GRIvIELf~d 30 (801)
..+|.++|.+.+. +.+.| .||-|.+
T Consensus 49 ~~~p~LvF~~QLAHGSptg--~Ie~fsn 74 (334)
T KOG3938|consen 49 AVRPRLVFHCQLAHGSPTG--RIEGFSN 74 (334)
T ss_pred cCCCceeEeeeeccCCccc--eeccccc
Confidence 4577778877764 66777 4566666
No 70
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=24.79 E-value=60 Score=33.40 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=10.1
Q ss_pred HHHHHHHHhccCC
Q 003712 35 TAENFRALCTGEK 47 (801)
Q Consensus 35 t~~nFl~Lc~G~~ 47 (801)
.+.+||.+|+++.
T Consensus 55 elg~flh~Cegd~ 67 (215)
T KOG3262|consen 55 ELGKFLHMCEGDL 67 (215)
T ss_pred hhhhhhhhcCCce
Confidence 4568999998764
No 71
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=24.34 E-value=40 Score=38.31 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=34.9
Q ss_pred CCCceEEecccCCCCCCceEEEEccCCCCCCCCCcEEEEEEe-CHHHHHHHHh
Q 003712 104 DRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQ-GHEILKKIEN 155 (801)
Q Consensus 104 ~~~G~Lsma~~g~~~ngSqFfITL~~~~~LDg~~tVFGkVV~-G~dVL~kIe~ 155 (801)
-..|.|.+.|..-..+-.+.=|++.+.+. |+...|+|+|++ -+.+|+.|..
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred ccCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCC
Confidence 45899999988666777899999999876 778899999996 6889888865
No 72
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=24.32 E-value=78 Score=25.65 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=19.4
Q ss_pred cEEEEEEEeCCceeeeEEEEEcCCCChH
Q 003712 7 LLVFMDVSIDGDPVERMVFELFSDIAPK 34 (801)
Q Consensus 7 p~V~~Dts~g~~~~GRIvIELf~d~aP~ 34 (801)
-.++|-+.+.+ .|||||||-+++|-.
T Consensus 17 R~ivmRvPleG--GGRLVvEl~~~Ea~~ 42 (51)
T PF11314_consen 17 RGIVMRVPLEG--GGRLVVELNPDEAKE 42 (51)
T ss_pred ceEEEEEecCC--CcEEEEEeCHHHHHH
Confidence 34677777765 499999999987643
No 73
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=23.98 E-value=34 Score=33.43 Aligned_cols=59 Identities=19% Similarity=0.132 Sum_probs=38.1
Q ss_pred HHHHHHHhccCCCCCCCCCCCccccCCeEEEeecCceeeeCcCcCCCCCCCCcccCCCCCCC
Q 003712 36 AENFRALCTGEKGIGPRTGKPLHYKGSFFHRVIKGSMAEGGDFVKRDGTSGESIYEGKFPDE 97 (801)
Q Consensus 36 ~~nFl~Lc~G~~g~g~~~~k~~~Y~Gs~f~RI~kgf~iQgGd~~~~~g~gg~si~g~~f~dE 97 (801)
...||-+. |++--|++||-..+|.+++-...+.-.+.-.|.+. +++.|...+|-+|...
T Consensus 69 IkdFMiQg-GDFv~gDGtG~~sIy~~~F~DENFtlkH~~PGlLS--MANsG~~tNGCQFFIT 127 (177)
T KOG0879|consen 69 IKDFMIQG-GDFVNGDGTGVASIYGSTFPDENFTLKHDGPGLLS--MANSGKDTNGCQFFIT 127 (177)
T ss_pred hhhheecc-CceecCCCceEEEEcCCCCCCcceeeecCCCceee--ccccCCCCCCceEEEE
Confidence 34455433 45555778888889988766666666666666554 5666666667666554
No 74
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=23.92 E-value=1.2e+02 Score=37.03 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=7.1
Q ss_pred CCCcEEEEE
Q 003712 4 KKSLLVFMD 12 (801)
Q Consensus 4 ~~np~V~~D 12 (801)
..||+||-|
T Consensus 18 aeNPLVYCD 26 (900)
T KOG0956|consen 18 AENPLVYCD 26 (900)
T ss_pred ccCceeeec
Confidence 468999976
No 75
>PF12580 TPPII: Tripeptidyl peptidase II ; InterPro: IPR022229 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=22.94 E-value=45 Score=34.70 Aligned_cols=90 Identities=13% Similarity=0.250 Sum_probs=42.5
Q ss_pred cccCCeEEEeecCc---eeeeCcCcCCCCCCCCcccCCCCCCCCCCCCCCCCceEEecccCCCCCCceEEEEccCCCCCC
Q 003712 58 HYKGSFFHRVIKGS---MAEGGDFVKRDGTSGESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLD 134 (801)
Q Consensus 58 ~Y~Gs~f~RI~kgf---~iQgGd~~~~~g~gg~si~g~~f~dE~~~l~h~~~G~Lsma~~g~~~ngSqFfITL~~~~~LD 134 (801)
+.+|..+|.++=.+ +-.+|.++.....-..-+|...|+.....+.-...-+|++. +....+|.+.|..
T Consensus 41 lp~grqiy~L~LtY~f~~~k~~eV~p~~p~L~~~LYes~fesql~mifD~NK~~v~~g----Dayp~~y~~kL~K----- 111 (194)
T PF12580_consen 41 LPDGRQIYELVLTYNFKLAKAGEVTPRLPLLSDLLYESEFESQLWMIFDSNKQLVGSG----DAYPHRYSTKLEK----- 111 (194)
T ss_dssp ETTTEE-EEEEEEEEEEESS-EEEEEE-TTTTT-SSS-SSS---EEEE-TTS-EEEEE-----SS-TT--EEE-S-----
T ss_pred CCCCceeEEEEEEEEEecCCceeEEEecccccchhhcccccceEEEEEcCCCcEEEcc----ccCCccCccccCC-----
Confidence 45666666654222 22233332222222234555555444333333344456664 3445589998875
Q ss_pred CCCcEEEEEE-eCHHHHHHHHhc
Q 003712 135 RKYVVFGELV-QGHEILKKIENV 156 (801)
Q Consensus 135 g~~tVFGkVV-~G~dVL~kIe~~ 156 (801)
|+|||--+|. +..++|++|..+
T Consensus 112 GdYtlrlqiRHe~~~~LEklk~~ 134 (194)
T PF12580_consen 112 GDYTLRLQIRHEDRSLLEKLKDL 134 (194)
T ss_dssp EEEEEEEEEEES-HHHHGGGTT-
T ss_pred ccEEEEEEEecCCHHHHHHhhCC
Confidence 6799999998 699999998765
No 76
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.85 E-value=41 Score=34.47 Aligned_cols=7 Identities=14% Similarity=0.287 Sum_probs=2.9
Q ss_pred EEEEEEe
Q 003712 139 VFGELVQ 145 (801)
Q Consensus 139 VFGkVV~ 145 (801)
|.|+-|.
T Consensus 74 i~gkei~ 80 (178)
T PF10278_consen 74 IGGKEIT 80 (178)
T ss_pred CCCccCC
Confidence 3344443
No 77
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=20.83 E-value=25 Score=39.84 Aligned_cols=9 Identities=11% Similarity=0.039 Sum_probs=4.4
Q ss_pred HHHHHHhcc
Q 003712 37 ENFRALCTG 45 (801)
Q Consensus 37 ~nFl~Lc~G 45 (801)
+-|-.||.|
T Consensus 101 apRE~~ak~ 109 (453)
T KOG3794|consen 101 APREKLAKA 109 (453)
T ss_pred ccHHHHhcC
Confidence 345555543
Done!