Query 003713
Match_columns 801
No_of_seqs 264 out of 1785
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:35:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0020 Endoplasmic reticulum 100.0 3E-169 6E-174 1358.8 40.0 672 93-773 70-756 (785)
2 PTZ00272 heat shock protein 83 100.0 2E-166 4E-171 1448.0 65.2 687 96-796 3-701 (701)
3 PTZ00130 heat shock protein 90 100.0 1E-164 3E-169 1431.8 65.1 666 94-769 64-764 (814)
4 KOG0019 Molecular chaperone (H 100.0 6E-164 1E-168 1356.8 49.8 619 93-770 32-654 (656)
5 COG0326 HtpG Molecular chapero 100.0 4E-161 9E-166 1361.0 58.2 615 94-761 3-622 (623)
6 PRK05218 heat shock protein 90 100.0 7E-140 1E-144 1223.8 62.6 608 94-762 2-613 (613)
7 PRK14083 HSP90 family protein; 100.0 6E-130 1E-134 1130.8 57.5 576 97-765 2-597 (601)
8 PF00183 HSP90: Hsp90 protein; 100.0 1E-128 2E-133 1109.2 41.6 510 282-795 1-530 (531)
9 PF13589 HATPase_c_3: Histidin 99.7 1.8E-16 3.9E-21 153.1 10.1 103 116-247 1-105 (137)
10 TIGR00585 mutl DNA mismatch re 99.4 1.2E-12 2.7E-17 143.0 12.8 166 108-307 11-192 (312)
11 COG1389 DNA topoisomerase VI, 99.3 1.7E-11 3.6E-16 135.6 12.9 152 121-297 39-200 (538)
12 PRK00095 mutL DNA mismatch rep 99.2 4.2E-10 9E-15 133.6 19.4 159 108-299 11-180 (617)
13 COG0323 MutL DNA mismatch repa 99.1 1.9E-10 4.2E-15 136.4 11.1 157 107-299 11-182 (638)
14 PRK04184 DNA topoisomerase VI 99.1 1.1E-09 2.4E-14 126.6 14.0 155 120-300 38-203 (535)
15 TIGR01052 top6b DNA topoisomer 99.0 4.9E-09 1.1E-13 120.1 13.7 152 121-300 31-194 (488)
16 PRK14868 DNA topoisomerase VI 98.9 7.9E-09 1.7E-13 122.1 12.7 150 121-300 49-209 (795)
17 PRK14867 DNA topoisomerase VI 98.4 1.4E-06 3.1E-11 103.1 12.2 151 121-299 39-199 (659)
18 PRK05559 DNA topoisomerase IV 98.4 9.1E-07 2E-11 105.5 8.8 161 119-307 38-209 (631)
19 PF02518 HATPase_c: Histidine 98.3 1.2E-06 2.7E-11 80.4 7.0 80 121-229 8-87 (111)
20 smart00433 TOP2c Topoisomerase 98.3 1.2E-06 2.6E-11 104.0 7.4 154 122-307 5-173 (594)
21 TIGR01055 parE_Gneg DNA topois 98.2 4.7E-06 1E-10 99.2 9.8 158 119-308 31-203 (625)
22 PRK05644 gyrB DNA gyrase subun 98.1 1E-05 2.2E-10 96.8 9.3 156 121-307 40-207 (638)
23 TIGR01059 gyrB DNA gyrase, B s 98.0 9.3E-06 2E-10 97.5 8.6 155 120-306 32-197 (654)
24 KOG1979 DNA mismatch repair pr 98.0 1.9E-05 4.2E-10 90.3 8.4 160 113-309 22-195 (694)
25 KOG1978 DNA mismatch repair pr 97.9 2.1E-05 4.6E-10 91.8 7.7 158 109-299 11-180 (672)
26 PRK14939 gyrB DNA gyrase subun 97.9 2.4E-05 5.3E-10 94.5 7.9 155 120-308 39-208 (756)
27 KOG1977 DNA mismatch repair pr 97.4 9.8E-05 2.1E-09 85.9 3.5 127 118-275 21-149 (1142)
28 cd00075 HATPase_c Histidine ki 97.3 0.0014 3E-08 56.8 8.6 86 121-235 3-92 (103)
29 PRK10755 sensor protein BasS/P 96.9 0.0015 3.3E-08 71.9 7.0 101 121-278 250-350 (356)
30 PRK10604 sensor protein RstB; 96.8 0.0025 5.4E-08 72.7 7.2 77 122-228 323-399 (433)
31 PRK09470 cpxA two-component se 96.7 0.0035 7.6E-08 71.0 7.9 48 122-185 357-404 (461)
32 TIGR02916 PEP_his_kin putative 96.7 0.0028 6E-08 76.8 7.4 73 122-227 583-655 (679)
33 PRK10549 signal transduction h 96.7 0.0037 8E-08 71.1 7.9 80 122-229 356-435 (466)
34 PRK11100 sensory histidine kin 96.7 0.0064 1.4E-07 68.8 9.4 101 122-277 372-472 (475)
35 smart00387 HATPase_c Histidine 96.7 0.0026 5.6E-08 56.0 4.8 80 122-230 9-88 (111)
36 TIGR01386 cztS_silS_copS heavy 96.6 0.005 1.1E-07 69.4 8.2 100 122-276 357-456 (457)
37 TIGR01058 parE_Gpos DNA topois 96.6 0.0053 1.1E-07 73.8 8.1 159 121-308 37-206 (637)
38 TIGR02938 nifL_nitrog nitrogen 96.5 0.0052 1.1E-07 69.5 7.1 53 121-185 390-444 (494)
39 PLN03237 DNA topoisomerase 2; 96.4 0.0098 2.1E-07 76.1 9.3 163 121-310 80-260 (1465)
40 PRK11006 phoR phosphate regulo 96.3 0.0079 1.7E-07 68.3 7.3 79 121-227 320-398 (430)
41 PRK10364 sensor protein ZraS; 96.3 0.011 2.3E-07 67.8 8.3 50 122-185 352-401 (457)
42 PRK15347 two component system 96.3 0.0077 1.7E-07 74.8 7.6 49 122-185 517-565 (921)
43 TIGR02956 TMAO_torS TMAO reduc 96.2 0.017 3.7E-07 72.3 9.7 74 122-226 583-657 (968)
44 PRK10815 sensor protein PhoQ; 96.1 0.013 2.9E-07 68.2 8.2 98 122-279 382-479 (485)
45 PRK11086 sensory histidine kin 96.1 0.019 4.1E-07 66.5 9.4 53 121-185 436-488 (542)
46 PRK11466 hybrid sensory histid 96.1 0.013 2.8E-07 72.9 8.4 73 122-227 565-637 (914)
47 PLN03128 DNA topoisomerase 2; 96.0 0.016 3.6E-07 73.3 8.8 162 121-310 55-235 (1135)
48 PRK15053 dpiB sensor histidine 96.0 0.022 4.8E-07 66.5 9.2 104 122-278 436-539 (545)
49 PTZ00108 DNA topoisomerase 2-l 95.9 0.024 5.2E-07 72.8 9.4 133 121-277 60-203 (1388)
50 PRK09303 adaptive-response sen 95.8 0.02 4.4E-07 64.3 7.3 77 122-228 276-353 (380)
51 PRK09467 envZ osmolarity senso 95.8 0.021 4.5E-07 64.4 7.4 32 154-185 351-382 (435)
52 COG0187 GyrB Type IIA topoisom 95.7 0.018 3.9E-07 67.8 6.8 163 119-310 37-211 (635)
53 TIGR02966 phoR_proteo phosphat 95.5 0.04 8.7E-07 58.8 8.0 50 122-185 233-282 (333)
54 PRK10337 sensor protein QseC; 95.4 0.038 8.3E-07 62.7 7.8 72 122-228 356-427 (449)
55 PRK11091 aerobic respiration c 95.2 0.072 1.5E-06 65.4 9.8 77 122-226 402-479 (779)
56 PRK10841 hybrid sensory kinase 95.1 0.16 3.5E-06 64.0 12.5 86 122-236 566-655 (924)
57 TIGR03785 marine_sort_HK prote 94.8 0.059 1.3E-06 65.8 7.6 79 122-228 601-679 (703)
58 PRK13837 two-component VirA-li 94.7 0.14 3.1E-06 63.5 10.7 81 122-236 564-663 (828)
59 PRK11360 sensory histidine kin 94.5 0.11 2.3E-06 60.4 8.3 49 122-184 504-553 (607)
60 PRK11107 hybrid sensory histid 94.5 0.089 1.9E-06 65.3 8.1 86 122-236 412-506 (919)
61 PRK04069 serine-protein kinase 94.4 0.038 8.2E-07 55.0 3.9 88 120-234 44-131 (161)
62 PRK10490 sensor protein KdpD; 94.4 0.071 1.5E-06 66.9 7.0 50 122-185 782-831 (895)
63 COG4191 Signal transduction hi 94.3 0.058 1.3E-06 63.3 5.5 63 99-185 490-552 (603)
64 COG0642 BaeS Signal transducti 94.3 0.054 1.2E-06 56.8 4.9 48 121-183 231-278 (336)
65 TIGR01925 spIIAB anti-sigma F 94.3 0.14 3.1E-06 48.8 7.3 46 121-177 42-87 (137)
66 PHA02569 39 DNA topoisomerase 94.1 0.049 1.1E-06 65.2 4.7 156 121-308 48-222 (602)
67 PRK09959 hybrid sensory histid 94.1 0.13 2.7E-06 66.3 8.7 99 122-277 832-935 (1197)
68 COG3290 CitA Signal transducti 94.0 0.091 2E-06 61.2 6.2 72 122-223 431-502 (537)
69 PRK10618 phosphotransfer inter 93.8 0.16 3.5E-06 63.7 8.5 49 122-185 569-620 (894)
70 PRK03660 anti-sigma F factor; 93.8 0.26 5.7E-06 47.4 8.2 48 120-178 41-88 (146)
71 PRK09835 sensor kinase CusS; P 93.8 0.099 2.1E-06 59.7 6.1 49 122-184 379-427 (482)
72 PTZ00109 DNA gyrase subunit b; 93.8 0.067 1.5E-06 65.8 4.8 167 120-308 131-356 (903)
73 PF13581 HATPase_c_2: Histidin 93.5 0.13 2.8E-06 48.1 5.4 81 120-232 33-113 (125)
74 TIGR01924 rsbW_low_gc serine-p 93.1 0.14 3E-06 51.0 5.1 88 120-234 44-131 (159)
75 COG5000 NtrY Signal transducti 92.4 0.32 6.8E-06 57.5 7.4 69 96-185 590-660 (712)
76 PRK10547 chemotaxis protein Ch 92.3 1 2.2E-05 54.9 11.8 53 123-183 390-448 (670)
77 KOG0019 Molecular chaperone (H 91.2 0.0042 9E-08 72.3 -9.4 226 497-734 375-603 (656)
78 COG0643 CheA Chemotaxis protei 89.7 0.64 1.4E-05 56.9 6.9 125 122-277 436-572 (716)
79 PRK13557 histidine kinase; Pro 89.4 1.5 3.2E-05 50.5 9.4 19 166-184 326-344 (540)
80 PRK10600 nitrate/nitrite senso 89.1 0.38 8.2E-06 57.0 4.2 43 122-179 473-515 (569)
81 PRK11644 sensory histidine kin 88.8 0.38 8.3E-06 56.4 4.0 42 122-178 414-455 (495)
82 COG3920 Signal transduction hi 88.8 0.65 1.4E-05 48.9 5.3 60 98-179 113-174 (221)
83 COG4251 Bacteriophytochrome (l 88.6 1.2 2.7E-05 52.9 7.7 74 154-244 657-736 (750)
84 PRK13560 hypothetical protein; 87.9 0.53 1.2E-05 57.2 4.5 45 122-179 715-762 (807)
85 PRK11073 glnL nitrogen regulat 87.6 0.91 2E-05 49.6 5.8 48 121-183 240-299 (348)
86 COG3850 NarQ Signal transducti 86.9 1.2 2.7E-05 52.0 6.4 54 102-179 474-527 (574)
87 COG2172 RsbW Anti-sigma regula 86.4 2.4 5.2E-05 41.9 7.3 84 120-236 42-128 (146)
88 COG4585 Signal transduction hi 85.9 0.54 1.2E-05 52.6 2.9 45 122-181 283-327 (365)
89 COG2205 KdpD Osmosensitive K+ 83.1 2.7 5.8E-05 51.6 7.1 55 122-190 779-833 (890)
90 COG5002 VicK Signal transducti 81.0 3.5 7.7E-05 46.1 6.5 56 154-223 362-419 (459)
91 KOG0787 Dehydrogenase kinase [ 78.6 6.3 0.00014 44.5 7.5 123 120-282 262-384 (414)
92 KOG1845 MORC family ATPases [C 75.8 2.3 5.1E-05 52.1 3.6 94 122-236 150-246 (775)
93 PRK10935 nitrate/nitrite senso 75.4 3.2 6.8E-05 48.7 4.5 42 122-178 475-517 (565)
94 COG4192 Signal transduction hi 71.2 8.7 0.00019 44.5 6.3 48 122-184 568-618 (673)
95 COG2972 Predicted signal trans 68.4 8.1 0.00017 44.9 5.7 56 116-183 348-405 (456)
96 PRK13559 hypothetical protein; 64.6 7.1 0.00015 43.0 4.1 44 122-178 271-318 (361)
97 KOG0355 DNA topoisomerase type 59.4 13 0.00029 45.7 5.3 125 122-275 57-192 (842)
98 PF06112 Herpes_capsid: Gammah 53.5 15 0.00032 36.4 3.5 37 700-736 17-62 (147)
99 COG4564 Signal transduction hi 49.8 17 0.00036 40.6 3.7 59 114-183 351-409 (459)
100 COG3851 UhpB Signal transducti 45.3 24 0.00052 40.0 4.0 28 150-177 427-454 (497)
101 KOG1845 MORC family ATPases [C 45.2 17 0.00037 44.9 3.2 51 167-236 2-53 (775)
102 PF12588 PSDC: Phophatidylseri 35.2 62 0.0013 32.0 4.7 54 705-761 2-60 (141)
103 COG2865 Predicted transcriptio 33.0 53 0.0011 38.6 4.5 86 116-227 268-357 (467)
104 PRK06851 hypothetical protein; 32.9 4.8E+02 0.01 29.9 12.0 63 529-594 190-254 (367)
105 COG1578 Uncharacterized conser 28.3 2.5E+02 0.0054 30.8 8.2 29 584-612 153-186 (285)
106 COG3852 NtrB Signal transducti 26.6 1.5E+02 0.0032 33.3 6.3 58 122-183 245-306 (363)
107 smart00481 POLIIIAc DNA polyme 22.6 1.4E+02 0.0031 24.7 4.3 55 532-588 4-60 (67)
108 KOG0541 Alkyl hydroperoxide re 20.6 1E+02 0.0023 31.1 3.4 36 574-609 70-109 (171)
109 cd03567 VHS_GGA VHS domain fam 20.6 1.1E+02 0.0024 30.1 3.6 52 464-519 79-139 (139)
No 1
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-169 Score=1358.78 Aligned_cols=672 Identities=47% Similarity=0.833 Sum_probs=622.4
Q ss_pred CCcccccchhhHHHHHHHHHhcCCCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeC
Q 003713 93 PPLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDS 172 (801)
Q Consensus 93 ~~~e~~~Fq~e~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DN 172 (801)
..+++|.||++++|||.||+|+||+|+++||||||+||+||++|+|+++++++..++...++.|.|..|+.++.|.|.|.
T Consensus 70 ~kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~Dt 149 (785)
T KOG0020|consen 70 SKAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDT 149 (785)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecc
Confidence 35789999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhcchhhHHHHhhccccC-CCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCC
Q 003713 173 GIGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDA-GGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANA 251 (801)
Q Consensus 173 GiGMt~eel~~~l~tIa~Sg~~~f~~~~~~~~~~-~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~ 251 (801)
|||||++||++||||||+||+.+|+.++++..+. ..-.++||||||||||+|+|||+|+|+|++ +++.+|+|+|++.
T Consensus 150 GiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKh-NdD~QyiWESdan- 227 (785)
T KOG0020|consen 150 GIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKH-NDDSQYIWESDAN- 227 (785)
T ss_pred cCCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEecc-CCccceeeeccCc-
Confidence 9999999999999999999999999999864211 112379999999999999999999999999 7889999999987
Q ss_pred CceEEEecCCCCCCCCCccEEEEEecCCCccCCCHHHHHHHHHHhccCCCcCeEeeccccccccccCCCCcccc--cccc
Q 003713 252 SSYTIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAET--NKDK 329 (801)
Q Consensus 252 ~~y~I~~~~~~~~~~~~GT~I~L~Lk~d~~e~~~~~~i~~lIk~ys~fl~~PI~~~~~~~~~~~~~~~e~~~~~--~~~~ 329 (801)
+|+|.+++++ ++..|||+|+|||+++..+|+++.+|+++|++||+||.|||++|..++.+.+++.+|+|+.+ .+++
T Consensus 228 -~FsvseDprg-~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lWsSKt~~~E~pvEEe~~t~e~~~ed 305 (785)
T KOG0020|consen 228 -SFSVSEDPRG-NTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLWSSKTVEVEVPVEEEEETEEDSTED 305 (785)
T ss_pred -ceeeecCCCC-CcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeeeeccceeeecccccccccccccccc
Confidence 9999999987 78899999999999999999999999999999999999999999999888888887766543 2222
Q ss_pred hh---h-HHHhhhcccceeeccccceecccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeeccccceeEEEEE
Q 003713 330 QD---E-TAEKKKKTKTVVERYWDWELTNETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILY 405 (801)
Q Consensus 330 ~~---~-~~~~~~~~~~~~~~~~~~e~iN~~~piW~r~~~~vt~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~lly 405 (801)
++ + +++++.|+|++.+++|+|+.+|..+|||+|+|++|+++||..|||+++++..+|++|+||++||.++|++|||
T Consensus 306 ~ea~vEEee~EKpKTKKV~kT~wdWel~NdvKpIW~R~p~eV~EdEYt~FYkSlsKds~dPma~~HF~aEGeVtFksiLy 385 (785)
T KOG0020|consen 306 KEAAVEEEEEEKPKTKKVEKTVWDWELLNDVKPIWLRKPKEVTEDEYTKFYKSLSKDSTDPMAYIHFTAEGEVTFKSILY 385 (785)
T ss_pred hhhhhhhhhhccccccchhhcchhhhhhcccchhhccCchhcchHHHHHHHHhhhccccCccceeeeeccccEEEEEEEE
Confidence 11 1 2233568899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCccccC-CCCcCeEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHH
Q 003713 406 VPAVAPMGKDDLIN-PKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRK 484 (801)
Q Consensus 406 iP~~~p~~~~~~~~-~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~i~~~l~~k 484 (801)
||..+|.++|+.+. ....+|+||||||||+|++. +++|.||+||+|||||+|||||||||+||++++|+.|++.|++|
T Consensus 386 VP~~~P~~lf~~Yg~~~~dniKLYVrrVFItDeF~-dmmPkYLsFikGvVDSDdLPLNVSrE~LQQHkllKvIkKKLvrK 464 (785)
T KOG0020|consen 386 VPKKAPRDLFDEYGSKKSDNIKLYVRRVFITDEFH-DMMPKYLSFIKGVVDSDDLPLNVSRETLQQHKLLKVIKKKLVRK 464 (785)
T ss_pred eCCCCchHHHHHhccccccceeEEEEEEEecchHH-HHhHHHHHHHhhccCcCcCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998655 55689999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCChHHHHH-HHHHHhHHhhhcccCCccChhhccCccceeeccCCCccccHHHHHhhcCCCCccEEEEec
Q 003713 485 AFDMILGISMSENRADYEK-FWENFGKYLKMGCIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAA 563 (801)
Q Consensus 485 v~~~L~~la~~~d~e~Y~~-f~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts~~~~~~~SL~eYv~rm~e~Qk~IYYit~ 563 (801)
+++||++++. ++|.. ||++||.++|+|+++|+.||-+|++||||.||+++++.+||++|++|||+.|+.|||++|
T Consensus 465 ~LDmikKia~----e~~~d~FW~EFgtniKLGviED~sNr~rLAKLLrFqss~~~~~~TsLdqYveRMK~kQ~~IyymaG 540 (785)
T KOG0020|consen 465 VLDMIKKIAG----EKYDDIFWKEFGTNIKLGVIEDPSNRTRLAKLLRFQSSNHPTKITSLDQYVERMKEKQDKIYYMAG 540 (785)
T ss_pred HHHHHHHhhc----cccchHHHHHhccceeeeeeeCcccHHHHHHHHhhhccCCCCCcccHHHHHHHHhhccccEEEecC
Confidence 9999999996 57777 999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCHHHHhcChhHHHHhhCCceEEEecCCccHHHHHHhhhccCCceEeccccccCcCCCchHHH--HhhhHHHHHHHHHHH
Q 003713 564 DSVASARNTPFLEKLLEKDLEVLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGEKNEEKE--KVMKEEFGQTCDWIK 641 (801)
Q Consensus 564 ds~~~~~~sp~lE~~k~kg~EVL~l~dpiDE~~lq~L~e~~gkkf~~V~k~~l~L~~~~ee~~--~~~~~e~~~L~~~lk 641 (801)
.|+.+++.|||+|++.++||||||+++|+||+|||.|.+|+||+|++|.++++.+++.+..++ +..+++|++|++|+|
T Consensus 541 ssr~e~E~sPfvERLlkKGyEVi~ltepVDEyciqalpe~d~KkFQNVaKEG~k~~~~eK~Ke~~e~l~~~FepL~~W~k 620 (785)
T KOG0020|consen 541 SSRKEVEKSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKKFQNVAKEGVKFDKSEKTKESHEALEEEFEPLTKWLK 620 (785)
T ss_pred CcHhhhccCcHHHHHHhcCceEEEEcchhHHHHHHhhhhhcchhHhHHHhhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887654444 445788999999999
Q ss_pred HH-hCCceeEEEecccCCCCCeEEEecCCCccHHHHHHHHHhccC---CCCcccccCCCceEEECCCChHHHHHHhhhcC
Q 003713 642 KR-LGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVG---DTSSMEFMRGRRVFEINPEHPIIQNLNAASKN 717 (801)
Q Consensus 642 ~~-LgdkV~~V~vS~rL~dsPa~lv~~e~g~s~~Merimkaq~~~---d~~~~~~~~~k~iLEINp~HPLIk~L~~l~~~ 717 (801)
.. |.++|.++.||+||++|||++|++.+|||++|+|||++|+.+ |.+..-|+.+|++|||||.||||+.|+.++..
T Consensus 621 ~~alkd~ieka~vSqrL~~spcalVas~~GwsgNmERimksqa~~~~kD~~~~~Y~~qKkt~EINPRHPlirell~Ri~a 700 (785)
T KOG0020|consen 621 DKALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIMKSQAYQKSKDPSKNYYASQKKTFEINPRHPLIRELLRRIAA 700 (785)
T ss_pred hhHHHHHHHHHHHHHHhccCchhhhhhhccccccHHHHHHHhhhhccCCchhhHHhccCceeeeCCCChHHHHHHHHhhc
Confidence 85 689999999999999999999999999999999999999865 33333456799999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcccC
Q 003713 718 CPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEMLGMNLQGKWSVPDAAEV 773 (801)
Q Consensus 718 d~~d~~~~~~a~lLyd~AlLs~G~~ledp~~f~~ri~~lL~~~L~~~~~~~~~~~~ 773 (801)
++.|+.+++.|.+||++|+|.+||.+.|+..|+.||++||+++|+++.++..++++
T Consensus 701 deeD~t~~d~A~lmf~TAtlrSGf~L~d~~~fadrIe~~lr~sL~is~Da~ve~e~ 756 (785)
T KOG0020|consen 701 DEEDETVKDTAVLMFETATLRSGFILQDTKDFADRIENMLRQSLNISPDAQVEEEI 756 (785)
T ss_pred CcccchHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHhhcCCCccccccccc
Confidence 99999999999999999999999999999999999999999999999888665543
No 2
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=2e-166 Score=1447.97 Aligned_cols=687 Identities=44% Similarity=0.766 Sum_probs=604.4
Q ss_pred ccccchhhHHHHHHHHHhcCCCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCC
Q 003713 96 EKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIG 175 (801)
Q Consensus 96 e~~~Fq~e~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiG 175 (801)
|+|+||+|+++||+||+|+|||++++|||||||||+|||+|+|+++++++.+.....++.|+|..|.++++|+|.|||+|
T Consensus 3 e~~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiG 82 (701)
T PTZ00272 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIG 82 (701)
T ss_pred ceEecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCC
Confidence 78999999999999999999999999999999999999999999999999887677788999999988999999999999
Q ss_pred CCHHHHHHHHHHHhhcchhhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCceE
Q 003713 176 MTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYT 255 (801)
Q Consensus 176 Mt~eel~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~y~ 255 (801)
||++||.++|||||+||++.|+++++.+ .+.++|||||||||||||||++|+|+|++. .+.+|.|+++|+ |.|+
T Consensus 83 Mt~edl~~~LgtIa~SGt~~f~~~~~~~----~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~-~~~~~~W~s~~~-g~y~ 156 (701)
T PTZ00272 83 MTKADLVNNLGTIARSGTKAFMEALEAG----GDMSMIGQFGVGFYSAYLVADRVTVTSKNN-SDESYVWESSAG-GTFT 156 (701)
T ss_pred CCHHHHHHHhhhhhhcchHHHHHHhhcc----CCccccCCCCcceEEEEEeccEEEEEEecC-CCceEEEEECCC-CcEE
Confidence 9999999999999999999999888643 467899999999999999999999999985 457999999998 9999
Q ss_pred EEecCCCCCCCCCccEEEEEecCCCccCCCHHHHHHHHHHhccCCCcCeEeeccccccccccCCCC--cccc-------c
Q 003713 256 IREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDED--PAET-------N 326 (801)
Q Consensus 256 I~~~~~~~~~~~~GT~I~L~Lk~d~~e~~~~~~i~~lIk~ys~fl~~PI~~~~~~~~~~~~~~~e~--~~~~-------~ 326 (801)
|.+++. ...++||+|+|||+++..+|++.++|++||++||+||+|||+++..+..+.+++++++ ++++ .
T Consensus 157 i~~~~~--~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (701)
T PTZ00272 157 ITSTPE--SDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEEPK 234 (701)
T ss_pred EEeCCC--CCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEEeeccccccccCcchhhhcccccccccccc
Confidence 998764 2358999999999999999999999999999999999999999865433322222110 0000 0
Q ss_pred ccc-hhhHHHhhhcccceeeccccceecccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeeccccceeEEEEE
Q 003713 327 KDK-QDETAEKKKKTKTVVERYWDWELTNETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILY 405 (801)
Q Consensus 327 ~~~-~~~~~~~~~~~~~~~~~~~~~e~iN~~~piW~r~~~~vt~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~lly 405 (801)
+++ +++++++++|+++++++.++|++||+.+|||+|++++||++||.+|||+++++|++||+|+||++||+++|+||||
T Consensus 235 ~~~~~~~~~~~~~k~~~~~~~~~~~e~iN~~~~lW~r~~~~i~~eey~~Fyk~~~~~~~~Pl~~ih~~~eg~~~~~~lly 314 (701)
T PTZ00272 235 VEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMF 314 (701)
T ss_pred cccccccccccccccccccccccchhhcccCcCCeecCcccCCHHHHHHHHHHhcCCcCCCceeeeeccCCceeeEEEEE
Confidence 011 0011223445566777889999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCccccCCCCcCeEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHH
Q 003713 406 VPAVAPMGKDDLINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKA 485 (801)
Q Consensus 406 iP~~~p~~~~~~~~~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~i~~~l~~kv 485 (801)
||+.+|+++|+. +..+++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|+
T Consensus 315 iP~~~~~~~~~~-~~~~~~i~LY~~rVfI~d~~~-~llP~~l~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~i~~~i~~ki 392 (701)
T PTZ00272 315 VPKRAPFDMFEP-NKKRNNIKLYVRRVFIMDNCE-DLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKC 392 (701)
T ss_pred eCCCCccchhhh-hhccCceEEEEeeEEEecchh-hhhHHHHhheeEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHH
Confidence 999999998864 335689999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHhHHhhhcccCCccChhhccCccceeeccCCCccccHHHHHhhcCCCCccEEEEecCC
Q 003713 486 FDMILGISMSENRADYEKFWENFGKYLKMGCIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAADS 565 (801)
Q Consensus 486 ~~~L~~la~~~d~e~Y~~f~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts~~~~~~~SL~eYv~rm~e~Qk~IYYit~ds 565 (801)
+++|.++++ ++++|++||++||.+||+|+++|.+|+++|++||||+||.++++++||+||++||+++|+.|||++|+|
T Consensus 393 ~~~l~~la~--~~~~y~~f~~~~g~~lK~G~~~D~~~~~~l~~Llrf~ss~~~~~~~sL~eYv~rmk~~Q~~IYY~~~~s 470 (701)
T PTZ00272 393 LEMFDEVAE--NKEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDS 470 (701)
T ss_pred HHHHHHHhh--CHHHHHHHHHHHhhhhheeeccCHhHHHHHHHhhceeecCCCCceeeHHHHHHhhccCCceEEEEeCCC
Confidence 999999994 689999999999999999999999999999999999999766789999999999999999999999999
Q ss_pred HHHHhcChhHHHHhhCCceEEEecCCccHHHHHHhhhccCCceEeccccccCcCCCchHHH--HhhhHHHHHHHHHHHHH
Q 003713 566 VASARNTPFLEKLLEKDLEVLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGEKNEEKE--KVMKEEFGQTCDWIKKR 643 (801)
Q Consensus 566 ~~~~~~sp~lE~~k~kg~EVL~l~dpiDE~~lq~L~e~~gkkf~~V~k~~l~L~~~~ee~~--~~~~~e~~~L~~~lk~~ 643 (801)
++++++|||+|.|+++|||||||+||||||||++|.+|+|++|++|++++++|++.+++++ ++.++++++|++|||+.
T Consensus 471 ~~~~~~sP~lE~~~~kg~EVL~l~dpiDe~~i~~l~ey~~k~f~sV~~~~~~l~~~~~e~~~~~~~~~~~~~L~~~~k~~ 550 (701)
T PTZ00272 471 KKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEV 550 (701)
T ss_pred HHHHHhChHHHHHHhCCCeEEEeCCcHHHHHHHHHHhcCCCceEecccccccccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998865333222 33456799999999999
Q ss_pred hCCceeEEEecccCCCCCeEEEecCCCccHHHHHHHHHhccCCCCcccccCCCceEEECCCChHHHHHHhhhcCCCCchH
Q 003713 644 LGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDND 723 (801)
Q Consensus 644 LgdkV~~V~vS~rL~dsPa~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~k~iLEINp~HPLIk~L~~l~~~d~~d~~ 723 (801)
|+++|.+|++|+||+++|||||++++|++++|+|||++|++++.....+|..+++|||||+||||++|+.++..+++++.
T Consensus 551 L~~kV~~VkvS~RL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~kkiLEINP~HpiIk~L~~~~~~~~~~~~ 630 (701)
T PTZ00272 551 LGDKVEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKA 630 (701)
T ss_pred hCCcccEEEEeccCCCCCeEEEecccchhHHHHHHHHhcccccccccccccCCeEEEECCCCHHHHHHHHHhhcccchHH
Confidence 99999999999999999999999999999999999999976432222455688999999999999999987656667778
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCcccCCCCCCCCCCCCcccccccccccc
Q 003713 724 ALRVVDLLYDAALVSSGFTPENPAELGSKIYEMLGMNLQGKWSVPDAAEVQHPTATQSQTSQTYEAEVVEPAE 796 (801)
Q Consensus 724 ~~~~a~lLyd~AlLs~G~~ledp~~f~~ri~~lL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (801)
++++|+||||+|+|++|+.++||+.|++|+|+||..+|+++++.+..+++.++ ..++++++.++.-+|+||
T Consensus 631 ~~~la~~LyD~AlL~~G~~leDp~~f~~Ri~~lL~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~ 701 (701)
T PTZ00272 631 VKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEEEAAEAPVA--ETAPAEVTAGTSSMEQVD 701 (701)
T ss_pred HHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcCCCcccccccccccc--ccCCccccccccccccCC
Confidence 99999999999999999999999999999999998799999988653322221 124445444445566654
No 3
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=1.2e-164 Score=1431.79 Aligned_cols=666 Identities=42% Similarity=0.739 Sum_probs=591.8
Q ss_pred CcccccchhhHHHHHHHHHhcCCCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCC
Q 003713 94 PLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSG 173 (801)
Q Consensus 94 ~~e~~~Fq~e~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNG 173 (801)
..++|+||+|+++||+||+++|||+++||||||||||+|||+|+||++++++.+.....++.|+|..|+++++|+|+|||
T Consensus 64 ~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnG 143 (814)
T PTZ00130 64 GIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTG 143 (814)
T ss_pred ccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECC
Confidence 46899999999999999999999999999999999999999999999999998887778899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhcchhhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCc
Q 003713 174 IGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASS 253 (801)
Q Consensus 174 iGMt~eel~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~ 253 (801)
||||++||.++|||||+||++.|+++++... .+..+||||||||||||||||+|+|+|++. ++.+|.|+|+|+ +.
T Consensus 144 IGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~---~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~-~~~~~~W~s~g~-g~ 218 (814)
T PTZ00130 144 IGMTKEDLINNLGTIAKSGTSNFLEAISKSG---GDMSLIGQFGVGFYSAFLVADKVIVYTKNN-NDEQYIWESTAD-AK 218 (814)
T ss_pred CCCCHHHHHHHhhhhcccccHHHHHHhhccC---CCcccccccccchhheeeecCEEEEEEcCC-CCceEEEEECCC-Cc
Confidence 9999999999999999999999999887421 457899999999999999999999999995 467899999999 99
Q ss_pred eEEEecCCCCCCCCCccEEEEEecCCCccCCCHHHHHHHHHHhccCCCcCeEeeccccccccccCCCCcccc-cccchhh
Q 003713 254 YTIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAET-NKDKQDE 332 (801)
Q Consensus 254 y~I~~~~~~~~~~~~GT~I~L~Lk~d~~e~~~~~~i~~lIk~ys~fl~~PI~~~~~~~~~~~~~~~e~~~~~-~~~~~~~ 332 (801)
|+|++++++ ...++||+|+|||+++..+|++.++|++||++||+||+|||++++.+...+++++++..+.+ +..++++
T Consensus 219 y~I~e~~~~-~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~fI~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (814)
T PTZ00130 219 FTIYKDPRG-STLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQFIQYPIYLLHENVYTEEVLADIAKEMENDPNYDSV 297 (814)
T ss_pred EEEEECCCC-CCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhccCCCCEEEccccccccccccccccccccccccccc
Confidence 999997653 34689999999999999999999999999999999999999998754333333221110000 0000000
Q ss_pred H----HHhhhcccceeeccccceecccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeeccccceeEEEEEecC
Q 003713 333 T----AEKKKKTKTVVERYWDWELTNETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPA 408 (801)
Q Consensus 333 ~----~~~~~~~~~~~~~~~~~e~iN~~~piW~r~~~~vt~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~ 408 (801)
+ ++++++++++++.+++|++||+.+|||+|++++||+|+|.+|||++++++++||+|+||++||+++|+||||||+
T Consensus 298 e~~~~~~~~~k~k~v~~~~~~~e~vN~~~aiW~r~~~eit~EeY~eFYk~l~~~~~dPl~~iH~~~Eg~~~~~~LLYIP~ 377 (814)
T PTZ00130 298 KVEETDDPNKKTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDYKKFFSVLSGFNDEPLYHIHFFAEGEIEFKCLIYIPS 377 (814)
T ss_pred cccccccccccccccccceeeeeeeccCCCcccCCcccCCHHHHHHHHHHhcCCccCCceeeeeccCCCeeEEEEEEecC
Confidence 0 112345566677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCCCCcCeEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHH
Q 003713 409 VAPMGKDDLINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDM 488 (801)
Q Consensus 409 ~~p~~~~~~~~~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~i~~~l~~kv~~~ 488 (801)
.+|+.++.. ...+++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++
T Consensus 378 ~ap~~~~~~-~~~~~~ikLYvrrVfI~d~~~-dLLP~wL~FVkGVVDSeDLPLNVSRE~LQ~n~~l~~Irk~l~kkil~~ 455 (814)
T PTZ00130 378 RAPSINDHL-FTKQNSIKLYVRRVLVADEFV-EFLPRYMSFVKGVVDSDDLPLNVSREQLQQNKILKAVSKRIVRKILDT 455 (814)
T ss_pred CCccchhhh-hhccCceEEEEeeEEeecchh-hhhhHHHhhhEEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHH
Confidence 999877652 235799999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhc----------------------------CChHHHHHHHHHHhHHhhhcccCCccChhhccCccceeeccCCCc
Q 003713 489 ILGISMS----------------------------ENRADYEKFWENFGKYLKMGCIDDRENHKPLAPLLRFFSSQSEDE 540 (801)
Q Consensus 489 L~~la~~----------------------------~d~e~Y~~f~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts~~~~~ 540 (801)
|.++++. ++|++|.+||++||.+||+||++|..|+++|++||||+||++ ++
T Consensus 456 L~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~e~Y~kF~~~fg~~LK~Gv~eD~~nre~l~~LLrF~Ss~~-~~ 534 (814)
T PTZ00130 456 FRTLYKEGKKNKETLRAELAKETDEEKKKEIQKKINEPSTYKLIYKEYRKYLKTGCYEDDINRNKIVKLLLFKTMLH-PK 534 (814)
T ss_pred HHHHHhhccccchhcccccccccccccccccccccccHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhheeeeCCC-CC
Confidence 9999861 468999999999999999999999999999999999999975 37
Q ss_pred cccHHHHHhhcCCCCccEEEEecCCHHHHhcChhHHHHhhCCceEEEecCCccHHHHHHhhhccCCceEeccccccCcCC
Q 003713 541 MISLDEYVENMKPEQKDIYFIAADSVASARNTPFLEKLLEKDLEVLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGE 620 (801)
Q Consensus 541 ~~SL~eYv~rm~e~Qk~IYYit~ds~~~~~~sp~lE~~k~kg~EVL~l~dpiDE~~lq~L~e~~gkkf~~V~k~~l~L~~ 620 (801)
++||+||++||+++|+.|||+++++++++++|||+|.|+++|||||||++||||+|+++|.+|+|++|++|++++++++.
T Consensus 535 ~~SL~eYv~rMke~Qk~IYY~t~~s~~~~~~SP~lE~~~~kg~EVL~l~d~iDE~~l~~L~e~~gk~~~sV~~~~~~~~~ 614 (814)
T PTZ00130 535 SISLDTYIENMKPDQKFIYYASGDSYEYLSKIPQLQIFKKKNIDVVFLTESVDESCVQRVQEYDGKKFKSIQKGEITFEL 614 (814)
T ss_pred ccCHHHHHhhhccCCeEEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHHHHHHHHhcCceEEEeccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred CchHHH--HhhhHHHHHHHHHHHHHhCCceeEEEecccCCCCCeEEEecCCCccHHHHHHHHHhccCCCCcccccCCCce
Q 003713 621 KNEEKE--KVMKEEFGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRV 698 (801)
Q Consensus 621 ~~ee~~--~~~~~e~~~L~~~lk~~LgdkV~~V~vS~rL~dsPa~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~k~i 698 (801)
.+++++ ++.++++++|++|+|+.|+++|.+|++|+||++||||||++++|+|++|+|||++|.+. +....++..+++
T Consensus 615 ~~~e~~~~~~~~~~~~~L~~~~k~~L~~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~~-~~~~~~~~~k~i 693 (814)
T PTZ00130 615 TEDEKKKEEKVKKMYKALIDVISDTLRNQIFKVEISRRLVDAPCAVVSTEWGLSGQMEKLMKINVNN-SDQIKAMSGQKI 693 (814)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHhcCcccEEEEeccCCCCCcEEEecCccccHHHHHHHHHhhcc-ccccccccCCeE
Confidence 333322 33446699999999999999999999999999999999999999999999999998642 211235568999
Q ss_pred EEECCCChHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCC
Q 003713 699 FEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEMLGMNLQGKWSVPD 769 (801)
Q Consensus 699 LEINp~HPLIk~L~~l~~~d~~d~~~~~~a~lLyd~AlLs~G~~ledp~~f~~ri~~lL~~~L~~~~~~~~ 769 (801)
|||||+||||++|+.+...+++++.++++|++|||+|+|++|+.++||+.|++||++||..+|+++...+-
T Consensus 694 LEINp~Hpii~~L~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~l~DP~~fa~ri~~ll~~~l~~~~~~~~ 764 (814)
T PTZ00130 694 LEINPDHPIMIDLLKRSVSNPKDSQLTESIKIIYQSAKLASGFDLEDTADLAQIVYDHINQKLGVDNNLKI 764 (814)
T ss_pred EEECCCCHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCccccc
Confidence 99999999999998765456666779999999999999999999999999999999999999999977644
No 4
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-164 Score=1356.82 Aligned_cols=619 Identities=45% Similarity=0.781 Sum_probs=593.5
Q ss_pred CCcccccchhhHHHHHHHHHhcCCCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeC
Q 003713 93 PPLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDS 172 (801)
Q Consensus 93 ~~~e~~~Fq~e~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DN 172 (801)
.+.|+|.|||++++||+++++++||++++||||||+||+||++|+||.++++|+.. .+++.|+|.+++++++|+|.|+
T Consensus 32 ~~~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~--~~~l~I~i~~nk~~~tlti~Dt 109 (656)
T KOG0019|consen 32 EPQETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKA--LPELEIRIITNKDKRTITIQDT 109 (656)
T ss_pred ccccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCcccc--ccceeEEeccCCCcceEEEEec
Confidence 45689999999999999999999999999999999999999999999999999865 7889999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhcchhhHHHHhhc-cccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCC
Q 003713 173 GIGMTQQDLVDCLGTIAQSGTAKFLKAMKD-SKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANA 251 (801)
Q Consensus 173 GiGMt~eel~~~l~tIa~Sg~~~f~~~~~~-~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~ 251 (801)
|||||++||.++|||||+||++.|++++++ + .+.++||||||||||+|+||++|+|+|++ ..+.++.|+++++
T Consensus 110 GIGMTk~dLvnnLGTIAkSGtK~Fmealkea~----ad~~~IGQFGvGFYSaylVAdkV~V~tk~-~~~e~y~Wes~~~- 183 (656)
T KOG0019|consen 110 GIGMTKEDLVNNLGTIAKSGSKAFLEALKEAE----AESNLIGQFGVGFYSAFMVADRVVVTTRH-PADEGLQWTSNGR- 183 (656)
T ss_pred CCCcCHHHHHhhhhhhhhcccHHHHHHHHhcc----cchhhhhhcccchhhhhhhhheeEEeecc-CCCcceeeecCCC-
Confidence 999999999999999999999999999994 4 68899999999999999999999999999 5666999999999
Q ss_pred CceEEEecCCCCCCCCCccEEEEEecCCCccCCCHHHHHHHHHHhccCCCcCeEeeccccccccccCCCCcccccccchh
Q 003713 252 SSYTIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAETNKDKQD 331 (801)
Q Consensus 252 ~~y~I~~~~~~~~~~~~GT~I~L~Lk~d~~e~~~~~~i~~lIk~ys~fl~~PI~~~~~~~~~~~~~~~e~~~~~~~~~~~ 331 (801)
|+|+|..+++ ..+||+|+|||++++.+|+++.||+++|++||+||.|||++++
T Consensus 184 gs~~v~~~~~----~~rGTki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~~----------------------- 236 (656)
T KOG0019|consen 184 GSYEIAEASG----LRTGTKIVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLNG----------------------- 236 (656)
T ss_pred CceEEeeccC----ccccceEEeeehhhhhhhccHhHHHHHHhhccccccccchhhh-----------------------
Confidence 9999998764 7999999999999988999999999999999999999999986
Q ss_pred hHHHhhhcccceeeccccceecccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeeccccceeEEEEEecCCCC
Q 003713 332 ETAEKKKKTKTVVERYWDWELTNETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPAVAP 411 (801)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~e~iN~~~piW~r~~~~vt~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p 411 (801)
+.+|..+|||+|+|.+||.|||.+|||+++++|++||++.||++||+++|++|||||.++|
T Consensus 237 -------------------ek~N~tKpiW~rnp~dit~eey~eFYksl~ndw~d~lav~hf~~eg~lefrail~vP~rap 297 (656)
T KOG0019|consen 237 -------------------ERVNNLKAIWTMNPKEVNEEEHEEFYKSVSGDWDDPLYVLHFKTDGPLSIRSIFYIPKRAP 297 (656)
T ss_pred -------------------hhhhccCcccccCchhhhHHHHHHHHHhhcccccchhhHhhhccccceEEEEEEeccccCc
Confidence 3399999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCcCeEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHh
Q 003713 412 MGKDDLINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILG 491 (801)
Q Consensus 412 ~~~~~~~~~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~i~~~l~~kv~~~L~~ 491 (801)
+++|+. .+.++||+||+|||||+|+|. +++|+||+||+|||||+|||||+|||+||+|+++++||+.|++|++++|.+
T Consensus 298 ~~lF~~-~kk~n~i~Ly~rrv~I~d~~~-~lipe~l~fv~gvVdSeDlPLNiSremlQ~~~i~k~~rk~l~~k~l~~~~e 375 (656)
T KOG0019|consen 298 NSMFDM-RKKKNGIKLYARRVLITDDAG-DLIPEWLRFVRGVVDSEDIPLNLSREMLQENAVLRKLRKVLPQKILEMFQD 375 (656)
T ss_pred chhhhh-hhccCceEEEEEEEecCchhH-HHHHHHhchheeccccccCccchhHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999987 466799999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCChHHHHHHHHHHhHHhhhcccCCccChhh-ccCccceeeccCCCccccHHHHHhhcCCCCccEEEEecCCHHHHh
Q 003713 492 ISMSENRADYEKFWENFGKYLKMGCIDDRENHKP-LAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAADSVASAR 570 (801)
Q Consensus 492 la~~~d~e~Y~~f~~~f~~~lK~G~~eD~~~~e~-l~~lLrF~Ts~~~~~~~SL~eYv~rm~e~Qk~IYYit~ds~~~~~ 570 (801)
++ +|+|.|++||++||++||+||++|.+|+++ +++||||+||++.++++||++|+.||+++|+.||||+++|+.+++
T Consensus 376 ~a--~d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~~a~lLry~ss~s~~~~~Sl~dYv~rm~~~qk~iyyi~~~s~~~~~ 453 (656)
T KOG0019|consen 376 LA--KDAEKYKKFFKNYGLFLKEGIVTASEQQVKEIAKLLRYESSKSGEGATSLDDYVERMREGQKNIYYITAPNRQLAE 453 (656)
T ss_pred Hh--hhHHHHHHHHHHHhhhhhhcccchhhhhhhHHHHHhhhhccccccccccHHHHHHhhcccccceEEeccchhhhhh
Confidence 99 699999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHhhCCceEEEecCCccHHHHHHhhhccCCceEeccccccCcCCCchHHH--HhhhHHHHHHHHHHHHHhCCce
Q 003713 571 NTPFLEKLLEKDLEVLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGEKNEEKE--KVMKEEFGQTCDWIKKRLGDKV 648 (801)
Q Consensus 571 ~sp~lE~~k~kg~EVL~l~dpiDE~~lq~L~e~~gkkf~~V~k~~l~L~~~~ee~~--~~~~~e~~~L~~~lk~~LgdkV 648 (801)
+|||+|.++++|+|||||++||||+++++|.+|+|++||+|++++++|++.++++. ++.+++|+.||+|||+.||++|
T Consensus 454 ~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee~k~efe~lck~mK~iL~~kV 533 (656)
T KOG0019|consen 454 SSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEESKKEFEELCKWMKEILGSKV 533 (656)
T ss_pred cchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHHHHHHHHHHHHHHHHHhcCce
Confidence 99999999999999999999999999999999999999999999999985544333 5566799999999999999999
Q ss_pred eEEEecccCCCCCeEEEecCCCccHHHHHHHHHhccCCCCcccccCCCceEEECCCChHHHHHHhhhcCCCCchHHHHHH
Q 003713 649 ASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVV 728 (801)
Q Consensus 649 ~~V~vS~rL~dsPa~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~k~iLEINp~HPLIk~L~~l~~~d~~d~~~~~~a 728 (801)
++|++|+||+++||||+++++||+++|+|+|+||+..+++.+++|.++++|||||+||||+.|..++..++++ .+++++
T Consensus 534 ekV~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~kk~lEINP~hpivk~L~~~~~~dk~d-~~k~lv 612 (656)
T KOG0019|consen 534 EKVTVNNRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKAKKHLEINPDHPLVKTLRQLRESDKND-TAKDLV 612 (656)
T ss_pred EEEEecCcccCCceEEEecccccchhHHHHHhhhhccccChhhhccccceeeeCCCChHHHHHHHHHhcCcch-hHHHHH
Confidence 9999999999999999999999999999999999999999899999999999999999999999999999888 999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCc
Q 003713 729 DLLYDAALVSSGFTPENPAELGSKIYEMLGMNLQGKWSVPDA 770 (801)
Q Consensus 729 ~lLyd~AlLs~G~~ledp~~f~~ri~~lL~~~L~~~~~~~~~ 770 (801)
.|||++|+|++||+++||+.|++|||+||..+|+++++.+++
T Consensus 613 ~llfetALlssGfsl~dP~~~~~ri~~ml~~~l~~~e~~~~~ 654 (656)
T KOG0019|consen 613 EQLYETALISAGFSLDDPQTMVGRINRLLKSGLGRDEDEVEE 654 (656)
T ss_pred HHHHHHHHHHcCCCcCChHHHhhHHHHHHHHHhccCCCcccC
Confidence 999999999999999999999999999999999999987763
No 5
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-161 Score=1360.97 Aligned_cols=615 Identities=45% Similarity=0.761 Sum_probs=576.7
Q ss_pred CcccccchhhHHHHHHHHHhcCCCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCC
Q 003713 94 PLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSG 173 (801)
Q Consensus 94 ~~e~~~Fq~e~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNG 173 (801)
..+++.||+|+++||+||+|||||||+||||||||||+|||+|+||.++++|......++++|+|.+|+++++|+|.|||
T Consensus 3 ~~e~~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNG 82 (623)
T COG0326 3 EQETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNG 82 (623)
T ss_pred chhhhhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCC
Confidence 45899999999999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhcchhhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCc
Q 003713 174 IGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASS 253 (801)
Q Consensus 174 iGMt~eel~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~ 253 (801)
||||++|++++|||||+||++.|++.+.+++ ++.++||||||||||||||||+|+|+|++++.+.++.|+|+|. |.
T Consensus 83 IGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~---~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~-g~ 158 (623)
T COG0326 83 IGMTKDEVIENLGTIAKSGTKEFLESLSEDQ---KDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGE-GE 158 (623)
T ss_pred CCCCHHHHHHHHHHhhhccHHHHHHHhcccc---ccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCC-Cc
Confidence 9999999999999999999999999987642 5789999999999999999999999999988888999999999 99
Q ss_pred eEEEecCCCCCCCC-CccEEEEEecCCCccCCCHHHHHHHHHHhccCCCcCeEeeccccccccccCCCCcccccccchhh
Q 003713 254 YTIREETNPEKLLP-RGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAETNKDKQDE 332 (801)
Q Consensus 254 y~I~~~~~~~~~~~-~GT~I~L~Lk~d~~e~~~~~~i~~lIk~ys~fl~~PI~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 332 (801)
|+|+++++. + +||+|+|||+++..+|++.++|++||++||.||++||++.+++.. ++
T Consensus 159 ytv~~~~~~----~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~------~~------------ 216 (623)
T COG0326 159 YTVEDIDKE----PRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEK------DE------------ 216 (623)
T ss_pred eEEeeccCC----CCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEEeeeccc------cc------------
Confidence 999998753 5 699999999999999999999999999999999999999764321 00
Q ss_pred HHHhhhcccceeeccccceecccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeeccccceeEEEEEecCCCCC
Q 003713 333 TAEKKKKTKTVVERYWDWELTNETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPAVAPM 412 (801)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~e~iN~~~piW~r~~~~vt~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~ 412 (801)
...+|+.||+++|||+|+++++++|+|.+||++++++|++||+|+|+++||.+++++|||||+++||
T Consensus 217 -------------~~~~~e~iN~~~alW~r~ksei~~eeY~eFYk~~~~d~~~Pl~~~h~~~EG~~ey~~ll~iP~~aPf 283 (623)
T COG0326 217 -------------EVIEWETINKAKALWTRNKSEITDEEYKEFYKHLAHDFDDPLLWIHNKVEGRLEYTALLFIPSKAPF 283 (623)
T ss_pred -------------cchhHHHhccccCcccCChhhCChHHHHHHHHHhhcccCCCeEEEecccccceEEEEEEEccCCCCc
Confidence 0346899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCcCeEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHhh
Q 003713 413 GKDDLINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGI 492 (801)
Q Consensus 413 ~~~~~~~~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~i~~~l~~kv~~~L~~l 492 (801)
++|.. ..++|++||||||||||+|. +|||+||+||+|||||+|||||||||+||+|++++.||+.|++||+++|++|
T Consensus 284 dl~~~--~~k~glkLYv~rVfI~Dd~~-~llP~yl~Fv~GvIDS~DLpLNvSRE~LQ~n~~l~~Irk~l~kkvl~~L~~L 360 (623)
T COG0326 284 DLFRR--DRKRGLKLYVNRVFIMDDAE-DLLPNYLRFVRGVIDSEDLPLNVSREILQQNRILAAIRKALTKKVLSMLEKL 360 (623)
T ss_pred ccccc--cccCCcEEEEeeeEEeCChh-hhhhHHHhhheeeeecCCCCcccCHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99975 46799999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHhHHhhhcccCCccChhhccCccceeec-cCCCccccHHHHHhhcCCCCccEEEEecCCHHHHhc
Q 003713 493 SMSENRADYEKFWENFGKYLKMGCIDDRENHKPLAPLLRFFSS-QSEDEMISLDEYVENMKPEQKDIYFIAADSVASARN 571 (801)
Q Consensus 493 a~~~d~e~Y~~f~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts-~~~~~~~SL~eYv~rm~e~Qk~IYYit~ds~~~~~~ 571 (801)
|+ ++||+|.+||++||.+||+|+++|.+|+++|++||||.|| .+.++++||+||++||+++|+.|||++|++..++.+
T Consensus 361 a~-~~~e~y~~f~~~fg~~LKeG~~eD~~n~e~l~~lLrf~St~~~~~~~~sl~eYv~rmke~q~~IyY~tges~~~~~~ 439 (623)
T COG0326 361 AK-DDPEKYRKFWKQFGLVLKEGLYEDFENKEKLLDLLRFRSTSDSGEKTVSLEEYVSRMKEGQKQIYYITGESYQAAKG 439 (623)
T ss_pred Hh-cCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhEecccCCCccCcccHHHHHHhcccccceeEEeccccHHHHhc
Confidence 99 8999999999999999999999999999999999999995 445789999999999999999999999999999999
Q ss_pred ChhHHHHhhCCceEEEecCCccHHHHHHhhhccCCceEeccccccCcCCCchH--HH-HhhhHHHHHHHHHHHHHhCCce
Q 003713 572 TPFLEKLLEKDLEVLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGEKNEE--KE-KVMKEEFGQTCDWIKKRLGDKV 648 (801)
Q Consensus 572 sp~lE~~k~kg~EVL~l~dpiDE~~lq~L~e~~gkkf~~V~k~~l~L~~~~ee--~~-~~~~~e~~~L~~~lk~~LgdkV 648 (801)
||++|.++++|||||||+|+||++++..+.+|+|++|++|+++++++....++ .. ++.+.+|++|++++|+.|+++|
T Consensus 440 sP~lE~~k~kgieVL~l~d~iDe~~l~~~~e~egk~~~~i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~L~~~v 519 (623)
T COG0326 440 SPHLELFKAKGIEVLLLTDRIDEFMLTMLPEFEGKPFKSITKGDLDLELLEEEDEADSEEEKKEFKPLLERVKEILGDKV 519 (623)
T ss_pred CchHHHHHhcCcEEEecCccchHHHhhhhhhccCCcceeeccccccccccchhhhhhhHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999887765443 22 5566789999999999999999
Q ss_pred eEEEecccCCCCCeEEEecCCCccHHHHHHHHHhccCCCCcccccCCCceEEECCCChHHHHHHhhhcCCCCchHHHHHH
Q 003713 649 ASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVV 728 (801)
Q Consensus 649 ~~V~vS~rL~dsPa~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~k~iLEINp~HPLIk~L~~l~~~d~~d~~~~~~a 728 (801)
.+|++|+||+++|||++++..+++.+|+|+|++|++..+ ..+++|||||+||||++|..+. +...+.+++
T Consensus 520 k~Vr~s~rl~dspa~l~~~~~~~~~~m~r~l~~~~~~~~------~~k~ilEiNp~h~lv~~L~~~~----d~~~~~~~~ 589 (623)
T COG0326 520 KDVRLSHRLTDSPACLTTDGADLSTQMERLLKAQGQEVP------ESKKILEINPNHPLVKKLASLE----DEASVADLV 589 (623)
T ss_pred ceeEeecccCCCcceeecCccchhHHHHHHHHhccccCC------ccccceeeCcccHHHHHHHhcc----cHHHHHHHH
Confidence 999999999999999999999999999999999876432 4789999999999999999875 456799999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhc
Q 003713 729 DLLYDAALVSSGFTPENPAELGSKIYEMLGMNL 761 (801)
Q Consensus 729 ~lLyd~AlLs~G~~ledp~~f~~ri~~lL~~~L 761 (801)
++|||+|+|++|++++||..|++|+|++|.+++
T Consensus 590 ~llydqAll~eg~~~~dp~~F~~rln~ll~~~~ 622 (623)
T COG0326 590 ELLYDQALLAEGGPLEDPAAFIERLNDLLSRLL 622 (623)
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998765
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=6.7e-140 Score=1223.83 Aligned_cols=608 Identities=46% Similarity=0.754 Sum_probs=561.8
Q ss_pred CcccccchhhHHHHHHHHHhcCCCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCC
Q 003713 94 PLEKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSG 173 (801)
Q Consensus 94 ~~e~~~Fq~e~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNG 173 (801)
..|+++||+|+++||+||+++|||||++|||||||||+|||+|+|+.+++++.+.....+++|+|.+|.++++|+|+|||
T Consensus 2 ~~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG 81 (613)
T PRK05218 2 AMETGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNG 81 (613)
T ss_pred CcceeehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECC
Confidence 36899999999999999999999999999999999999999999999999988776777889999999988999999999
Q ss_pred CCCCHHHHHHHHHHHhhcchhhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCC-CCCcEEEEEecCCC
Q 003713 174 IGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPK-SDKQYVWEGEANAS 252 (801)
Q Consensus 174 iGMt~eel~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~-~~~~~~w~s~~~~~ 252 (801)
+|||++||..+|++||+||++.|+++++... ..+.++||+|||||||+||+|++|+|.|++.+ +..++.|.++|+ +
T Consensus 82 ~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~--~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~-~ 158 (613)
T PRK05218 82 IGMTREEVIENLGTIAKSGTKEFLEKLKGDQ--KKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGE-G 158 (613)
T ss_pred CCCCHHHHHHHHHhhccccchhHHHHhhccc--ccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCC-c
Confidence 9999999999999999999999999885321 13568999999999999999999999999976 456999999998 8
Q ss_pred ceEEEecCCCCCCCCCccEEEEEecCCCccCCCHHHHHHHHHHhccCCCcCeEeeccccccccccCCCCcccccccchhh
Q 003713 253 SYTIREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAETNKDKQDE 332 (801)
Q Consensus 253 ~y~I~~~~~~~~~~~~GT~I~L~Lk~d~~e~~~~~~i~~lIk~ys~fl~~PI~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 332 (801)
.|+|.+++. .++||+|+|+|+++..+|++.++|+++|++||+|++|||+++++
T Consensus 159 ~~~i~~~~~----~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~~~~----------------------- 211 (613)
T PRK05218 159 EYTIEEIEK----EERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKLEKE----------------------- 211 (613)
T ss_pred eeEEeECCC----CCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEEecc-----------------------
Confidence 999998653 47999999999999999999999999999999999999999642
Q ss_pred HHHhhhcccceeeccccceecccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeeccccceeEEEEEecCCCCC
Q 003713 333 TAEKKKKTKTVVERYWDWELTNETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPAVAPM 412 (801)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~e~iN~~~piW~r~~~~vt~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~ 412 (801)
+|+++|..+|+|+++++++++++|..||+.+++++.+||+++||+++|++.++|+||||..+|+
T Consensus 212 ----------------~~~~in~~~~~w~~~~~~i~~~~~~~fy~~~~~~~~~pl~~i~~~~e~~~~~~gll~iP~~~~~ 275 (613)
T PRK05218 212 ----------------EEETINSASALWTRSKSEITDEEYKEFYKHLAHDFDDPLFWIHNNVEGPFEYTGLLYIPKKAPF 275 (613)
T ss_pred ----------------cceeecCCccceecCCccccHHHHHHHhhhhcccccCCcEEEEcccCCceEEEEEEEeCCCCcc
Confidence 2688999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCcCeEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHhh
Q 003713 413 GKDDLINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGI 492 (801)
Q Consensus 413 ~~~~~~~~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~i~~~l~~kv~~~L~~l 492 (801)
++++. ..+++++||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|+++++|++.|++||+++|.++
T Consensus 276 ~~~~~--~~~~~~~lyvn~v~I~d~~~-~lLP~wl~Fv~GVVDs~dLplnvSRE~lq~~~~l~~i~~~l~~kv~~~l~~l 352 (613)
T PRK05218 276 DLFNR--DRKGGLKLYVKRVFIMDDAE-ELLPEYLRFVKGVIDSEDLPLNVSREILQEDRVVKKIRKAITKKVLDELEKL 352 (613)
T ss_pred chhhh--cccccEEEEECcEEeeCchh-hhchHHHhheEEEeecCCCCCccCHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 88854 35699999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHhHHhhhcccCCccChhhccCccceeeccCCCccccHHHHHhhcCCCCccEEEEecCCHHHHhcC
Q 003713 493 SMSENRADYEKFWENFGKYLKMGCIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAADSVASARNT 572 (801)
Q Consensus 493 a~~~d~e~Y~~f~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts~~~~~~~SL~eYv~rm~e~Qk~IYYit~ds~~~~~~s 572 (801)
++ +||++|++||++||.+||+||++|.+++++|++||||+||+ +++++||+||++||+++|+.|||++++|++++++|
T Consensus 353 a~-~d~~~y~~f~~~~~~~lK~g~~~D~~~~~~~~~lL~f~ts~-~~~~~sL~ey~~rm~~~q~~Iyy~~~~~~~~~~~s 430 (613)
T PRK05218 353 AK-NDREKYEKFWKEFGPVLKEGLYEDFANREKLAKLLRFASTH-EGKYVSLAEYVERMKEGQKKIYYITGDSREAAKNS 430 (613)
T ss_pred Hh-hCHHHHHHHHHHHHHHHHhhhhccHHHHHHHHhhceeeecC-CCCcccHHHHHHhCcCCCceEEEEeCCCHHHHHhC
Confidence 98 89999999999999999999999999999999999999996 56899999999999999999999999999999999
Q ss_pred hhHHHHhhCCceEEEecCCccHHHHHHhhhccCCceEeccccccCcCC-Cc-hHHH-HhhhHHHHHHHHHHHHHhCCcee
Q 003713 573 PFLEKLLEKDLEVLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGE-KN-EEKE-KVMKEEFGQTCDWIKKRLGDKVA 649 (801)
Q Consensus 573 p~lE~~k~kg~EVL~l~dpiDE~~lq~L~e~~gkkf~~V~k~~l~L~~-~~-ee~~-~~~~~e~~~L~~~lk~~LgdkV~ 649 (801)
||+|.|+++|+|||+|++|+|++|+++|.+|+|++|++|+++++++.+ .+ ++.. +..++++++|++|+++.|+++|.
T Consensus 431 p~~e~~~~~g~eVl~~~~~~De~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~v~ 510 (613)
T PRK05218 431 PHLELFKKKGIEVLLLTDPIDEFWISYLEEFDGKPFKSVARGDLDLGKEDEEEKEEKEEAEEEFKPLLERLKEALGDKVK 510 (613)
T ss_pred hHHHHHHhcCceEEEeCCccHHHHHHHHHHhcCCceEEeeccccccccccchhhhhhhhhHHHHHHHHHHHHHHhcCcce
Confidence 999999999999999999999999999999999999999999988865 11 1111 33456899999999999999999
Q ss_pred EEEecccCCCCCeEEEecCCCccHHHHHHHHHhccCCCCcccccCCCceEEECCCChHHHHHHhhhcCCCCchHHHHHHH
Q 003713 650 SVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVD 729 (801)
Q Consensus 650 ~V~vS~rL~dsPa~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~k~iLEINp~HPLIk~L~~l~~~d~~d~~~~~~a~ 729 (801)
+|++|+||+++|||++++++|++++|+|+|++|+. +++..+++|||||+||||++|+... +++.++++++
T Consensus 511 ~V~~s~rl~~~Pa~~v~~~~~~~~~mer~~~~~~~------~~~~~~~~LeiNp~hplI~~L~~~~----d~~~~~~~~~ 580 (613)
T PRK05218 511 DVRLSHRLTDSPACLVADEGDMSTQMEKLLKAAGQ------EVPESKPILEINPNHPLVKKLADEA----DEAKFKDLAE 580 (613)
T ss_pred EEEEeccCCCCCeEEEeCccchHHHHHHHHHhhhh------cccccceEEEEcCCCHHHHHHHhcc----ChHHHHHHHH
Confidence 99999999999999999999999999999998752 2223689999999999999998742 2345999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhcC
Q 003713 730 LLYDAALVSSGFTPENPAELGSKIYEMLGMNLQ 762 (801)
Q Consensus 730 lLyd~AlLs~G~~ledp~~f~~ri~~lL~~~L~ 762 (801)
+|||+|+|++|+.++||+.|++|+++||.++++
T Consensus 581 ~Lyd~AlL~~G~~~~d~~~~~~r~~~ll~~~~~ 613 (613)
T PRK05218 581 LLYDQALLAEGGSLEDPAAFVKRLNELLLKLLA 613 (613)
T ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999988764
No 7
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=6.5e-130 Score=1130.81 Aligned_cols=576 Identities=22% Similarity=0.324 Sum_probs=507.0
Q ss_pred cccchhhHHHHHHHHHhcCCCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEE-cCCCcEEEEEeCCCC
Q 003713 97 KYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQT-DKDNGIITITDSGIG 175 (801)
Q Consensus 97 ~~~Fq~e~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~-d~~~~~l~I~DNGiG 175 (801)
.++||+|+++||++|+++||+|+++|||||||||+|||+++++.. ...+++|+|.+ |.++++|+|+|||+|
T Consensus 2 ~~~Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~--------~~~~~~I~I~~~d~~~~~l~I~DnGiG 73 (601)
T PRK14083 2 SHRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALD--------PTAPGRIRIELTDAGGGTLIVEDNGIG 73 (601)
T ss_pred CccchHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccC--------CCCCceEEEEEccCCCcEEEEEeCCCC
Confidence 579999999999999999999999999999999999999988753 22356788887 888899999999999
Q ss_pred CCHHHHHHHHHHHhhcchhhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCceE
Q 003713 176 MTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYT 255 (801)
Q Consensus 176 Mt~eel~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~y~ 255 (801)
||.+++.++|++||+||++.|. +.. .+.++||||||||||+||||++|+|.|++.+++.++.|+++++ +.|+
T Consensus 74 mt~eel~~~l~~ig~S~k~~~~--~~~-----~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~-g~y~ 145 (601)
T PRK14083 74 LTEEEVHEFLATIGRSSKRDEN--LGF-----ARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKAD-GTYS 145 (601)
T ss_pred CCHHHHHHHHhhhccchhhhhh--hcc-----cccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCC-CceE
Confidence 9999999999999999998754 211 3567999999999999999999999999965677999999998 9999
Q ss_pred EEecCCCCCCCCCccEEEEEecCCCccCCCHHHHHHHHHHhccCCCcCeEeeccccccccccCCCCcccccccchhhHHH
Q 003713 256 IREETNPEKLLPRGTRLTLYLKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAETNKDKQDETAE 335 (801)
Q Consensus 256 I~~~~~~~~~~~~GT~I~L~Lk~d~~e~~~~~~i~~lIk~ys~fl~~PI~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 335 (801)
|+..+. ...++||+|+|+++++..+|++.++|++++++||.||+|||+++++
T Consensus 146 i~~~~~--~~~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l~~~-------------------------- 197 (601)
T PRK14083 146 VRKLET--ERAEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRVEGE-------------------------- 197 (601)
T ss_pred EEeCCC--CCCCCCCEEEEEecCchhhhccHHHHHHHHHHHhccCCCCcccCCc--------------------------
Confidence 997532 2468999999999999999999999999999999999999999642
Q ss_pred hhhcccceeeccccceecccCCCCcccCCCCCC--HHHHHHHHHHHhcCCCCCceeeeeeccccceeEEEEE-ecCCCCC
Q 003713 336 KKKKTKTVVERYWDWELTNETQPIWLRNPKEVT--TEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILY-VPAVAPM 412 (801)
Q Consensus 336 ~~~~~~~~~~~~~~~e~iN~~~piW~r~~~~vt--~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~lly-iP~~~p~ 412 (801)
.++||+++|||+|+++++| ++||.+|||++++ ++||+|+||++||+.. +++|| ||..+|+
T Consensus 198 --------------~~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~--~~Pl~~ih~~~e~~~~-~~~Ly~iP~~~~~ 260 (601)
T PRK14083 198 --------------KGGVNETPPPWTRDYPDPETRREALLAYGEELLG--FTPLDVIPLDVPSGGL-EGVAYVLPYAVSP 260 (601)
T ss_pred --------------eeeecCCCCCccCCccccCccHHHHHHHHHHhcC--CCchheeeecccchhh-eEEEEecCCCCCc
Confidence 1579999999999999999 9999999999998 5999999999999875 88887 5999887
Q ss_pred CCccccCCCCcCeEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHhh
Q 003713 413 GKDDLINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGI 492 (801)
Q Consensus 413 ~~~~~~~~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~i~~~l~~kv~~~L~~l 492 (801)
+ .+++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|+++++||+.|++||+++|.++
T Consensus 261 ~-------~~~~v~LY~~rVfI~d~~~-~lLP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~ir~~i~kki~~~L~~l 332 (601)
T PRK14083 261 A-------ARRKHRVYLKRMLLSEEAE-NLLPDWAFFVRCVVNTDELRPTASREALYEDDALAAVREELGEAIRKWLIGL 332 (601)
T ss_pred c-------ccCceEEEeeeeEeecchh-hhhHHHHHHheeeeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3579999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHhHHhhhcccCCccChhhccCccceeeccCCCccccHHHHHhhcCCCCccEEEEecC-CHHHHhc
Q 003713 493 SMSENRADYEKFWENFGKYLKMGCIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAAD-SVASARN 571 (801)
Q Consensus 493 a~~~d~e~Y~~f~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts~~~~~~~SL~eYv~rm~e~Qk~IYYit~d-s~~~~~~ 571 (801)
|+ +||++|++||++||.+||+||++|.+|+++|++||||+||. +.+||+||++|| +.|||++++ ++++++
T Consensus 333 a~-~d~e~y~~f~~~~g~~lK~g~~~D~~~~~~l~~lL~f~ss~---~~~sL~eY~~r~----~~IyY~~~~~~~~~~~- 403 (601)
T PRK14083 333 AT-TDPERLRRLLAVHHLGVKALASHDDELLRLILPWLPFETTD---GRMTLAEIRRRH----GVIRYTSSVDEFRQLA- 403 (601)
T ss_pred Hh-hCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhceeecCC---CCcCHHHHHHhC----CeEEEEcCHHHHHHHH-
Confidence 99 89999999999999999999999999999999999999996 569999999996 589999994 787775
Q ss_pred ChhHHHHhhCCceEEEecCCccHHHHHHhhh-ccCCceEeccccccC--cCCCchHHHHhhhHHHHHHHHHHHHHhCCce
Q 003713 572 TPFLEKLLEKDLEVLYLVDPIDEIAVQNLKS-YKEKNFVDISKEDLD--LGEKNEEKEKVMKEEFGQTCDWIKKRLGDKV 648 (801)
Q Consensus 572 sp~lE~~k~kg~EVL~l~dpiDE~~lq~L~e-~~gkkf~~V~k~~l~--L~~~~ee~~~~~~~e~~~L~~~lk~~LgdkV 648 (801)
+.|+++|+|||+|++||||+++++|.+ |+|++|++|+++++. |...+ ...++++++|++|+++.|++++
T Consensus 404 ----~~~~~kg~eVl~~~~~iDe~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~L~~~~ 475 (601)
T PRK14083 404 ----PIARAQGMGVINGGYTYDSELLERLPRLRPGLTVERLDPAELTDRLEPLT----PEEELALRPFLAEAREVLAPFG 475 (601)
T ss_pred ----HHHHHCCCeEEEeCCccHHHHHHHHHhhCCCCcEEEechhhhhhhccccc----hhhHHHHHHHHHHHHHHhCccc
Confidence 699999999999999999999999998 999999999998763 44322 2234579999999999999975
Q ss_pred eEE-EecccCCCCCeEEEecCCCccHHHHHHHHHhc-cCCCCc--------ccccCCCceEEECCCChHHHHHHhhhcCC
Q 003713 649 ASV-QISNRLSSSPCVLVSAKFGWSANMERLMKAQT-VGDTSS--------MEFMRGRRVFEINPEHPIIQNLNAASKNC 718 (801)
Q Consensus 649 ~~V-~vS~rL~dsPa~lv~~e~g~s~~Merimkaq~-~~d~~~--------~~~~~~k~iLEINp~HPLIk~L~~l~~~d 718 (801)
.+| ++|+||+++|||++++++ .+|+++|++.. +.++.+ ..++..+++|||||+||||++|+..
T Consensus 476 ~~v~~~s~rl~~~Pa~~v~~e~---~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~LeiN~~hpli~~l~~~---- 548 (601)
T PRK14083 476 CDVVIRHFEPADLPALYLHDRA---AQHSREREEAVEEADDLWADILGSLDESQPAPRARLVLNLRNPLVRRLATL---- 548 (601)
T ss_pred eEEEEEcCCCCCCCEEEEeCch---hHHHHHHHhhhhhcccchhhhhhhhhhcccccCeEEEECCCCHHHHHHHhc----
Confidence 555 788999999999999884 36677665321 111111 0222467999999999999999875
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHhhcCCCC
Q 003713 719 PDDNDALRVVDLLYDAALVSSGFTPE--NPAELGSKIYEMLGMNLQGKW 765 (801)
Q Consensus 719 ~~d~~~~~~a~lLyd~AlLs~G~~le--dp~~f~~ri~~lL~~~L~~~~ 765 (801)
.+++.+++++++|||+|+|++|++++ +|+.|..++++||..+|+.+.
T Consensus 549 ~d~~~~~~~~~~Lyd~AlL~~g~~l~~~e~~~~~~~~~~l~~~~l~~~~ 597 (601)
T PRK14083 549 GDPKLLSRAVEALYVQALLLGHRPLRPAEMALLNRSLLGLLELALDADI 597 (601)
T ss_pred cChHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34567999999999999999998777 999999999999999887543
No 8
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=1.1e-128 Score=1109.21 Aligned_cols=510 Identities=47% Similarity=0.813 Sum_probs=422.3
Q ss_pred cCCCHHHHHHHHHHhccCCCcCeEeeccccccccccCCCCcccc---c-----------ccchh-hH--HHhhhccccee
Q 003713 282 GFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAET---N-----------KDKQD-ET--AEKKKKTKTVV 344 (801)
Q Consensus 282 e~~~~~~i~~lIk~ys~fl~~PI~~~~~~~~~~~~~~~e~~~~~---~-----------~~~~~-~~--~~~~~~~~~~~ 344 (801)
+|++.++|++||++||+||+|||+++..+..++++++++++.++ + .++++ ++ +++++++++++
T Consensus 1 eyl~~~klk~lvkkyS~Fi~~PI~l~~~k~~~~ev~~ee~~~~~~~~~~~~~~~~~~~~~e~~~~eee~~~~~~k~k~~~ 80 (531)
T PF00183_consen 1 EYLEEYKLKELVKKYSQFISFPIYLWVEKEEEKEVPDEEEEEEEEEKEEEEKKEEEEEKVEEEDEEEEKEEKKPKTKKVK 80 (531)
T ss_dssp GGGSHHHHHHHHHHHHTTSSSEEEEEEEEEEECCCEHHHHHH---HTT-TT--------SSEEEE----S-TTEEEEECC
T ss_pred CcccHHHHHHHHHhhccccccceeEeeeccccccCCcchhhhhhhhhhhccccccccccccccccccccccccccccccc
Confidence 58999999999999999999999999888776666555432211 0 11111 11 12355677788
Q ss_pred eccccceecccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeeccccceeEEEEEecCCCCCCCccccCCCCcC
Q 003713 345 ERYWDWELTNETQPIWLRNPKEVTTEEYNEFYKKTFNEYLDPLASSHFTTEGEVEFRSILYVPAVAPMGKDDLINPKTKN 424 (801)
Q Consensus 345 ~~~~~~e~iN~~~piW~r~~~~vt~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~ 424 (801)
+++++|++||+++|||+|+|++||++||.+|||+++++|++||+|+||++||+++|+||||||+.+|+++|+. ...++|
T Consensus 81 ~~~~~~~~vN~~~piW~r~~~eit~eey~~Fyk~l~~~~~~Pl~~iH~~~eg~~~~~~lLyiP~~~p~~~~~~-~~~~~~ 159 (531)
T PF00183_consen 81 ETVWEWEQVNTQKPIWTRDPKEITDEEYKEFYKSLSKDYDDPLFWIHFNAEGPFEFKSLLYIPKRAPFDLFEN-DKKKNG 159 (531)
T ss_dssp EEEEEEEECS--S-GGGSSGGGS-HHHHHHHHHHHHTTSS-ESEEEEEEEESSSEEEEEEEEESS-SCCCCSS-STT--S
T ss_pred cceeecccccccCcccccchhccchHHHHHHHHHhhhcccCchhheeccccccceeeEEEEeCCCCchhhhhh-hhcccc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999876 345799
Q ss_pred eEEEeeeEEeecCCCCCCCcccccceeeeecCCCCCCcccHHhhcccHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHH
Q 003713 425 IRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGISMSENRADYEKF 504 (801)
Q Consensus 425 i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLpLNvSRE~LQ~~~~l~~i~~~l~~kv~~~L~~la~~~d~e~Y~~f 504 (801)
|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++|++.|++||+++|.+|+ +|+++|.+|
T Consensus 160 ikLY~rrVfI~d~~~-~llP~~L~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~~~l~kkvl~~l~~l~--~d~e~y~~f 236 (531)
T PF00183_consen 160 IKLYVRRVFITDNFE-ELLPEYLRFVKGVVDSDDLPLNVSRETLQQNKLLKKIRKKLVKKVLDMLKKLA--KDREKYEKF 236 (531)
T ss_dssp EEEEETTEEEESSCG-GSS-GGGTT-EEEEEESSS-SSCTHHHHHTHHHHHHHHHHHHHHHHHHHHHHH--TSHHHHHHH
T ss_pred ceeeeecccccchhh-cccchhhheeeeeeeccccCCccchhhhhccHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHH
Confidence 999999999999999 99999999999999999999999999999999999999999999999999999 589999999
Q ss_pred HHHHhHHhhhcccCCccChhhccCccceeeccCCCccccHHHHHhhcCCCCccEEEEecCCHHHHhcChhHHHHhhCCce
Q 003713 505 WENFGKYLKMGCIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAADSVASARNTPFLEKLLEKDLE 584 (801)
Q Consensus 505 ~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts~~~~~~~SL~eYv~rm~e~Qk~IYYit~ds~~~~~~sp~lE~~k~kg~E 584 (801)
|++||.+||+||++|..||++|++||||+||+++++++||++|++||+++|+.|||++|+|++++++|||+|+|+++|||
T Consensus 237 ~~~~g~~iK~G~~eD~~n~~kl~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYY~~g~s~~~~~~SP~lE~~k~kG~E 316 (531)
T PF00183_consen 237 WKEFGKFIKEGVIEDFKNREKLAKLLRFESSKSEGKLTSLDEYVERMKEGQKQIYYLTGESREEAEQSPYLEAFKKKGYE 316 (531)
T ss_dssp HHHHHHHHHHHHHH-GGGHHHHHTT-EEEETTTTTSEEEHHHHHHTS-TT-SEEEEEESSSHHHHHTSGGGHHHHHCT--
T ss_pred HHHHhHHHHhHHhhhhhhhhhcccceeeeccccccccccHHHhhhccccccccceEEecchHHHHhhccchhhHHhhCce
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred EEEecCCccHHHHHHhhhccCCceEeccccccCcCCCchHHH--HhhhHHHHHHHHHHHHHhCCceeEEEecccCCCCCe
Q 003713 585 VLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGEKNEEKE--KVMKEEFGQTCDWIKKRLGDKVASVQISNRLSSSPC 662 (801)
Q Consensus 585 VL~l~dpiDE~~lq~L~e~~gkkf~~V~k~~l~L~~~~ee~~--~~~~~e~~~L~~~lk~~LgdkV~~V~vS~rL~dsPa 662 (801)
||||+||||++||++|.+|+|++|++|++++++|++.++++. +..++++++|++|||+.|+++|.+|++|.||+++||
T Consensus 317 VL~l~dpIDe~~i~~L~e~~gkkf~~I~ke~l~l~~~e~ek~~~e~~~~~~~~L~~~~k~~L~~kV~~V~vS~RL~~sPa 396 (531)
T PF00183_consen 317 VLFLTDPIDEFVIQQLEEYEGKKFQSIDKEDLDLEEDEEEKKEDEELKEEFKPLTEWLKELLGDKVEKVKVSNRLVDSPA 396 (531)
T ss_dssp EEEE-SHHHHHHHHHHSEETTEEEEETTBSSSSSSTSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEE-SSSSSSSE
T ss_pred EEEeCCchHHHHHHHHhhccccccccccccccccccchhhhhhhhhhhhHHHHHHHHHHhhhhhhhheecccccccCCcc
Confidence 999999999999999999999999999999999887665543 556678999999999999999999999999999999
Q ss_pred EEEecCCCccHHHHHHHHHhccCCCCcccccCCCceEEECCCChHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhCCCC
Q 003713 663 VLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFT 742 (801)
Q Consensus 663 ~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~k~iLEINp~HPLIk~L~~l~~~d~~d~~~~~~a~lLyd~AlLs~G~~ 742 (801)
||+++++|+|++|+|||+||+++++....+|..+++|||||+||||++|+.+...+++++.++++|++|||+|+|++||+
T Consensus 397 ~lv~~e~g~s~~Merimkaqa~~~~~~~~~~~~kkiLEINp~HPLIk~L~~~~~~d~~d~~~~~la~~LyD~AlL~~G~~ 476 (531)
T PF00183_consen 397 VLVSSEYGWSANMERIMKAQAMADMSMQEYMPSKKILEINPNHPLIKKLLKLVEKDEDDELAKDLAEQLYDTALLASGFE 476 (531)
T ss_dssp EEEE-SSSB-HHHHHHHHHHHCCSTTTSSTSC--EEEEE-TTSHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTTSS
T ss_pred eeecccchhHHHHHHHhhhhccccccccccccccceeecCCCCHHHHHHHhhhcccchhhHHHHHHHHHhhhhhhhcCCC
Confidence 99999999999999999999987665556777899999999999999999998888888899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCCcccCCCCCC-CCCCCCccccccccccc
Q 003713 743 PENPAELGSKIYEMLGMNLQGKWSVPDAAEVQHPTA-TQSQTSQTYEAEVVEPA 795 (801)
Q Consensus 743 ledp~~f~~ri~~lL~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 795 (801)
++||+.|++|+|+||.++||++.+.+.++++.++.. .+++...+.+++.+|.|
T Consensus 477 l~dp~~F~~Ri~~lL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v 530 (531)
T PF00183_consen 477 LEDPAAFAKRINKLLEKSLGVDPDAEVEEEDEEEEEEEEEEEEEDKEDSEMEEV 530 (531)
T ss_dssp -SSHHHHHHHHHHHHHHTTC--STTTTTTGGG-GGG--------------SSS-
T ss_pred cccHHHHHHHHHHHHHHhcCCCcCCcccccccccccCCCCCCcCCCcccccccC
Confidence 999999999999999999999988766543222111 12333334444455554
No 9
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.67 E-value=1.8e-16 Score=153.08 Aligned_cols=103 Identities=37% Similarity=0.489 Sum_probs=78.5
Q ss_pred CCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEc-CCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchh
Q 003713 116 YSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTD-KDNGIITITDSGIGMTQQDLVDCLGTIAQSGTA 194 (801)
Q Consensus 116 Ys~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~ 194 (801)
|+. +.+|+|||+||+||+... +.|.|..+ .+...|.|.|||.||+.++|.. ++++|.|++.
T Consensus 1 y~~-~~al~ElI~Ns~DA~a~~----------------I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s~k~ 62 (137)
T PF13589_consen 1 YSP-EDALRELIDNSIDAGATN----------------IKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRSSKK 62 (137)
T ss_dssp -SC-THHHHHHHHHHHHHHHHH----------------EEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHTHHH
T ss_pred CcH-HHHHHHHHHHHHHccCCE----------------EEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCCCCC
Confidence 666 889999999999999643 45555554 2458999999999999999998 7789888765
Q ss_pred hHHHHhhccccCCCCCcccccccch-hhhhhcccCeEEEEEecCCCCCcEEEEE
Q 003713 195 KFLKAMKDSKDAGGDSNLIGQFGVG-FYSAFLVSDRVVVETKSPKSDKQYVWEG 247 (801)
Q Consensus 195 ~f~~~~~~~~~~~~~~~~IGqFGIG-f~S~F~vadkv~V~Sk~~~~~~~~~w~s 247 (801)
.. .....+|+||+| ++|+|+++++++|+|+..+....+.|..
T Consensus 63 ~~-----------~~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~ 105 (137)
T PF13589_consen 63 SE-----------KDRQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTIDY 105 (137)
T ss_dssp HH-----------HHGGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEEE
T ss_pred ch-----------hhhhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEEE
Confidence 21 123579999999 8899999999999999976655666554
No 10
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.41 E-value=1.2e-12 Score=142.99 Aligned_cols=166 Identities=22% Similarity=0.290 Sum_probs=108.0
Q ss_pred HHHHH-hcCCCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCc-EEEEEeCCCCCCHHHHHHHH
Q 003713 108 MDLIV-NSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNG-IITITDSGIGMTQQDLVDCL 185 (801)
Q Consensus 108 l~ll~-~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~-~l~I~DNGiGMt~eel~~~l 185 (801)
...|. .....++..+|+|||+||.||.. . .|.|.+..+.. .|+|.|||.||+.+++...+
T Consensus 11 ~~~i~s~~~i~~~~~~l~eLi~Na~dA~a----------------~--~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~ 72 (312)
T TIGR00585 11 VNKIAAGEVIERPASVVKELVENSLDAGA----------------T--RIDVEIEEGGLKLIEVSDNGSGIDKEDLPLAC 72 (312)
T ss_pred HHHHhCcCchhhHHHHHHHHHHHHHHCCC----------------C--EEEEEEEeCCEEEEEEEecCCCCCHHHHHHHh
Confidence 34443 45677899999999999999962 2 34554443333 59999999999999998744
Q ss_pred HHHhhcchh-hHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEec-CCCCCcEEEEEecCCCceEEEecCCCC
Q 003713 186 GTIAQSGTA-KFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKS-PKSDKQYVWEGEANASSYTIREETNPE 263 (801)
Q Consensus 186 ~tIa~Sg~~-~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~-~~~~~~~~w~s~~~~~~y~I~~~~~~~ 263 (801)
... .+++. .+. .+ ......|.+|.|++|...+| +++|+|+. ..++.++.|...|. .+.... +
T Consensus 73 ~~~-~tsk~~~~~-~~-------~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~~~~~~~~~~~g~----~~~~~~-~- 136 (312)
T TIGR00585 73 ERH-ATSKIQSFE-DL-------ERIETLGFRGEALASISSVS-RLTITTKTSAADGLAWQALLEGG----MIEEIK-P- 136 (312)
T ss_pred hCC-CcCCCCChh-Hh-------hcccccCccchHHHHHHhhC-cEEEEEeecCCCcceEEEEECCC----cCcccc-c-
Confidence 333 33322 111 11 23356899999999999998 89999997 45556788874332 222211 1
Q ss_pred CCCCCccEEEEE-ec---CCCccCCC-----HHHHHHHHHHhc---cCCCcCeEee
Q 003713 264 KLLPRGTRLTLY-LK---HDDKGFAH-----PERIQKLVKNYS---QFVSFPIYTW 307 (801)
Q Consensus 264 ~~~~~GT~I~L~-Lk---~d~~e~~~-----~~~i~~lIk~ys---~fl~~PI~~~ 307 (801)
...++||+|++. |- +....|+. ...+++++++|+ ..+.|.+..+
T Consensus 137 ~~~~~GTtV~v~~lf~n~p~r~~~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~ 192 (312)
T TIGR00585 137 APRPVGTTVEVRDLFYNLPVRRKFLKSPKKEFRKILDLLNRYALIHPDVSFSLTHD 192 (312)
T ss_pred ccCCCccEEEEchhhccCchhhhhccCcHHHHHHHHHHHHHHhhcCCCeEEEEEEC
Confidence 235799999997 11 11111222 357889999998 5556666664
No 11
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.30 E-value=1.7e-11 Score=135.58 Aligned_cols=152 Identities=21% Similarity=0.274 Sum_probs=102.1
Q ss_pred HHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEE-cCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHH
Q 003713 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQT-DKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKA 199 (801)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~-d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~ 199 (801)
..++|||.||.|||+....+ ++++|+|.. +.+-.+++|+|||+|++.+++-+.||++-.|++-.
T Consensus 39 ~tv~ElV~NSLDA~eeaGIL-----------PdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh---- 103 (538)
T COG1389 39 TTVHELVTNSLDACEEAGIL-----------PDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFH---- 103 (538)
T ss_pred HHHHHHHhcchhhHHhcCCC-----------CceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhh----
Confidence 48999999999999865443 456666653 45667899999999999999999999998877642
Q ss_pred hhccccCCCCCcccccccchhhhhh-----cccCeEEEEEecCCCCCcEEEEEecC--C-CceEEEecCCCCCCCCCccE
Q 003713 200 MKDSKDAGGDSNLIGQFGVGFYSAF-----LVSDRVVVETKSPKSDKQYVWEGEAN--A-SSYTIREETNPEKLLPRGTR 271 (801)
Q Consensus 200 ~~~~~~~~~~~~~IGqFGIGf~S~F-----~vadkv~V~Sk~~~~~~~~~w~s~~~--~-~~y~I~~~~~~~~~~~~GT~ 271 (801)
...+..||+|||.-+|. --+..|.|+|+..+++..+.++-.-+ . ..--++....+.....|||+
T Consensus 104 --------~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~ 175 (538)
T COG1389 104 --------RNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTR 175 (538)
T ss_pred --------hhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceE
Confidence 12356799999975554 44577999999855455555442211 1 11122221111123479999
Q ss_pred EEEEecCCCccCCCHHH-HHHHHHHhc
Q 003713 272 LTLYLKHDDKGFAHPER-IQKLVKNYS 297 (801)
Q Consensus 272 I~L~Lk~d~~e~~~~~~-i~~lIk~ys 297 (801)
|.|+++..+. -...+ +.++|++-+
T Consensus 176 Vel~~~~~~~--~~~~qgi~eYlkrta 200 (538)
T COG1389 176 VELELKGVWY--RAKRQGIYEYLKRTA 200 (538)
T ss_pred EEEEecccch--hhcccCHHHHHHHHh
Confidence 9999998762 23334 666666543
No 12
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.21 E-value=4.2e-10 Score=133.64 Aligned_cols=159 Identities=21% Similarity=0.298 Sum_probs=102.6
Q ss_pred HHHHH-hcCCCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCC-CcEEEEEeCCCCCCHHHHHHHH
Q 003713 108 MDLIV-NSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKD-NGIITITDSGIGMTQQDLVDCL 185 (801)
Q Consensus 108 l~ll~-~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DNGiGMt~eel~~~l 185 (801)
...|+ .....++..+|+|||.||.||++ + .|.|.+..+ ...|+|.|||.||+.+++...+
T Consensus 11 ~~~IaAgevI~~~~svvkElveNsiDAga----------------t--~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~ 72 (617)
T PRK00095 11 ANQIAAGEVVERPASVVKELVENALDAGA----------------T--RIDIEIEEGGLKLIRVRDNGCGISKEDLALAL 72 (617)
T ss_pred HHHhcCcCcccCHHHHHHHHHHHHHhCCC----------------C--EEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHh
Confidence 34443 55677899999999999999963 2 455555433 3589999999999999998766
Q ss_pred HHHhhcchhhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCceEEEecCCCCCC
Q 003713 186 GTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKL 265 (801)
Q Consensus 186 ~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~y~I~~~~~~~~~ 265 (801)
...+.|.-..+ +.+ ......|..|.|+.|.-.|+ +++|+|+..++..++.+...++ ....+.+. .
T Consensus 73 ~~~~tsKi~~~-~dl-------~~~~t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G-~~~~~~~~-----~ 137 (617)
T PRK00095 73 ARHATSKIASL-DDL-------EAIRTLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYEGG-EIVEVKPA-----A 137 (617)
T ss_pred hccCCCCCCCh-hHh-------hccccCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEecCC-cCcceecc-----c
Confidence 54443321111 011 12245799999998888776 8999999854455676665444 22122221 2
Q ss_pred CCCccEEEEE-e---cCCCccCC-----CHHHHHHHHHHhccC
Q 003713 266 LPRGTRLTLY-L---KHDDKGFA-----HPERIQKLVKNYSQF 299 (801)
Q Consensus 266 ~~~GT~I~L~-L---k~d~~e~~-----~~~~i~~lIk~ys~f 299 (801)
..+||+|++. | -+....|+ +...|.+++++|+-.
T Consensus 138 ~~~GT~V~v~~LF~n~P~Rrkflk~~~~e~~~i~~~v~~~Al~ 180 (617)
T PRK00095 138 HPVGTTIEVRDLFFNTPARRKFLKSEKTELGHIDDVVNRLALA 180 (617)
T ss_pred CCCCCEEEechhhccCcHHHHhccCcHHHHHHHHHHHHHHhhc
Confidence 4799999996 1 11112232 234678888888754
No 13
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.12 E-value=1.9e-10 Score=136.40 Aligned_cols=157 Identities=22% Similarity=0.290 Sum_probs=111.2
Q ss_pred HHHHHH-hcCCCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCc-EEEEEeCCCCCCHHHHHHH
Q 003713 107 LMDLIV-NSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNG-IITITDSGIGMTQQDLVDC 184 (801)
Q Consensus 107 ll~ll~-~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~-~l~I~DNGiGMt~eel~~~ 184 (801)
+.+.|+ -..-..|..+++|||.||.||++ .+|+|.++.++. .|.|+|||+||+++||.-.
T Consensus 11 l~nqIAAGEVIerPaSVVKELVENSlDAGA------------------t~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la 72 (638)
T COG0323 11 LVNQIAAGEVIERPASVVKELVENSLDAGA------------------TRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLA 72 (638)
T ss_pred HHHHhcccceeecHHHHHHHHHhcccccCC------------------CEEEEEEccCCccEEEEEECCCCCCHHHHHHH
Confidence 344443 34666899999999999999974 478888877665 5999999999999999998
Q ss_pred HHHHhhcchhhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCce-EEEecCCCC
Q 003713 185 LGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSY-TIREETNPE 263 (801)
Q Consensus 185 l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~y-~I~~~~~~~ 263 (801)
+...|.|-=..+-+ + -...-.|..|=.+.|.-.| .+++|+|+......++.|...|+ ..- ++.+.
T Consensus 73 ~~rHaTSKI~~~~D-L-------~~I~TlGFRGEAL~SIasV-srlti~Srt~~~~~~~~~~~~g~-~~~~~~~p~---- 138 (638)
T COG0323 73 LLRHATSKIASLED-L-------FRIRTLGFRGEALASIASV-SRLTITSRTAEASEGTQIYAEGG-GMEVTVKPA---- 138 (638)
T ss_pred HhhhccccCCchhH-H-------HHhhccCccHHHHHHHHhh-heeEEEeecCCcCceEEEEecCC-cccccccCC----
Confidence 88888874322111 0 1224567777778777777 78999999755566788877766 322 34433
Q ss_pred CCCCCccEEEEE------------ecCCCccCCCHHHHHHHHHHhccC
Q 003713 264 KLLPRGTRLTLY------------LKHDDKGFAHPERIQKLVKNYSQF 299 (801)
Q Consensus 264 ~~~~~GT~I~L~------------Lk~d~~e~~~~~~i~~lIk~ys~f 299 (801)
..+.||+|++. +|.+..| -..|..+|++|+-.
T Consensus 139 -a~~~GTtVeV~dLF~NtPaRrKflks~~~E---~~~i~~vv~r~ALa 182 (638)
T COG0323 139 -AHPVGTTVEVRDLFYNTPARRKFLKSEKTE---FGHITELINRYALA 182 (638)
T ss_pred -CCCCCCEEEehHhhccChHHHHhhcccHHH---HHHHHHHHHHHHhc
Confidence 24569999997 3333333 36788999998744
No 14
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.07 E-value=1.1e-09 Score=126.63 Aligned_cols=155 Identities=23% Similarity=0.279 Sum_probs=97.4
Q ss_pred hHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEc---CCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhH
Q 003713 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTD---KDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKF 196 (801)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d---~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f 196 (801)
...|+|||.||+||+.... ..+.+.|.+... .+...|+|.|||+||+.+++...|+....+++-
T Consensus 38 ~qVLkNLIeNAIDa~~~~g-----------ilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~-- 104 (535)
T PRK04184 38 YTTVKELVDNSLDACEEAG-----------ILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKF-- 104 (535)
T ss_pred HHHHHHHHHHHHHHhhhcC-----------CCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccc--
Confidence 4578999999999996321 012344555432 223579999999999999999887765433221
Q ss_pred HHHhhccccCCCCCcccccccchhhhhhcccC-----eEEEEEecCCCCCcEEEEEecC---CCceEEEecCCCCCCCCC
Q 003713 197 LKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSD-----RVVVETKSPKSDKQYVWEGEAN---ASSYTIREETNPEKLLPR 268 (801)
Q Consensus 197 ~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vad-----kv~V~Sk~~~~~~~~~w~s~~~---~~~y~I~~~~~~~~~~~~ 268 (801)
. ......|++|+|+.++.+++. .+.|.|+..++..++.++-.-+ .+.-.+.....+ ....+
T Consensus 105 ----~------~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~i~~~~~~~-~~~~~ 173 (535)
T PRK04184 105 ----H------NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPIILEREEVD-WDRWH 173 (535)
T ss_pred ----c------ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCeeccccccC-CCCCC
Confidence 0 112456999999999887765 5899998733332555443211 011111111110 13579
Q ss_pred ccEEEEEecCCCccCCCHHHHHHHHHHhccCC
Q 003713 269 GTRLTLYLKHDDKGFAHPERIQKLVKNYSQFV 300 (801)
Q Consensus 269 GT~I~L~Lk~d~~e~~~~~~i~~lIk~ys~fl 300 (801)
||+|.+.+..++. ....++.++|++++---
T Consensus 174 GT~V~V~l~~~~~--~~~~~I~e~i~r~Al~n 203 (535)
T PRK04184 174 GTRVELEIEGDWY--RAKQRIYEYLKRTAIVN 203 (535)
T ss_pred CEEEEEEECCcCh--hhHHHHHHHHHHHHHhC
Confidence 9999999887653 22678889999887554
No 15
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.96 E-value=4.9e-09 Score=120.13 Aligned_cols=152 Identities=21% Similarity=0.252 Sum_probs=95.2
Q ss_pred HHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcC---CCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHH
Q 003713 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDK---DNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFL 197 (801)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~ 197 (801)
..++|||.||+||+... .....|.|.+.. +...|+|.|||.||+.+++...|....++++-.
T Consensus 31 ~VlkELVeNAIDA~~~~-------------g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~-- 95 (488)
T TIGR01052 31 TVIHELVTNSLDACEEA-------------GILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFH-- 95 (488)
T ss_pred HHHHHHHHHHHHHhhcc-------------CCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCccc--
Confidence 47899999999998521 111234444432 223799999999999999998877654443210
Q ss_pred HHhhccccCCCCCcccccccchhhhhhcccC-----eEEEEEecCCCCCcEEEEEec----CCCceEEEecCCCCCCCCC
Q 003713 198 KAMKDSKDAGGDSNLIGQFGVGFYSAFLVSD-----RVVVETKSPKSDKQYVWEGEA----NASSYTIREETNPEKLLPR 268 (801)
Q Consensus 198 ~~~~~~~~~~~~~~~IGqFGIGf~S~F~vad-----kv~V~Sk~~~~~~~~~w~s~~----~~~~y~I~~~~~~~~~~~~ 268 (801)
......|++|+|+.++.+++. .++|.|+..+...++.++..- ..|.. +...+.+ ....+
T Consensus 96 ----------~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~i-~~~~~~~-~~~~~ 163 (488)
T TIGR01052 96 ----------RIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGEI-VEKGEWN-KPGWR 163 (488)
T ss_pred ----------cccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCee-cceeecC-CCCCC
Confidence 123456999999998888876 399999884333344554421 11221 1211111 11247
Q ss_pred ccEEEEEecCCCccCCCHHHHHHHHHHhccCC
Q 003713 269 GTRLTLYLKHDDKGFAHPERIQKLVKNYSQFV 300 (801)
Q Consensus 269 GT~I~L~Lk~d~~e~~~~~~i~~lIk~ys~fl 300 (801)
||+|++.+......+ ...++.+++++|+---
T Consensus 164 GT~V~v~f~~~~~r~-~k~~i~e~l~~~Al~n 194 (488)
T TIGR01052 164 GTRIELEFKGVSYRR-SKQGVYEYLRRTAVAN 194 (488)
T ss_pred ceEEEEEECCceeec-cHHHHHHHHHHHHhhC
Confidence 999999976544221 3578888888877544
No 16
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.90 E-value=7.9e-09 Score=122.13 Aligned_cols=150 Identities=19% Similarity=0.343 Sum_probs=95.9
Q ss_pred HHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCC--cEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHH
Q 003713 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDN--GIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLK 198 (801)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~--~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~ 198 (801)
..|+|||.||+||+.. ....+.|.|.+.... ..|+|.|||+||+.+++...|...+++++-.
T Consensus 49 tVLkNLIeNALDAs~~-------------~gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~--- 112 (795)
T PRK14868 49 TAVKEAVDNALDATEE-------------AGILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFH--- 112 (795)
T ss_pred HHHHHHHHHHHHhCcc-------------cCCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhccccccc---
Confidence 4788999999999841 111124544443332 4799999999999999999887776544311
Q ss_pred HhhccccCCCCCcccccccchhhhhhcccC-----eEEEEEecCCCCCcEEEEE--ecCCC--ceEEEecCCCCCCCCCc
Q 003713 199 AMKDSKDAGGDSNLIGQFGVGFYSAFLVSD-----RVVVETKSPKSDKQYVWEG--EANAS--SYTIREETNPEKLLPRG 269 (801)
Q Consensus 199 ~~~~~~~~~~~~~~IGqFGIGf~S~F~vad-----kv~V~Sk~~~~~~~~~w~s--~~~~~--~y~I~~~~~~~~~~~~G 269 (801)
......|+.|+|+-++.+++. .+.|+|+..+...++.|.- +++.. ........ + ....+|
T Consensus 113 ---------~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~-~-~~~~~G 181 (795)
T PRK14868 113 ---------AREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETT-T-WDRPHG 181 (795)
T ss_pred ---------ccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceec-c-cCCCCc
Confidence 111345899999988887775 4899998744445665543 33311 21111111 1 135799
Q ss_pred cEEEEEecCCCccCCCHHHHHHHHHHhccCC
Q 003713 270 TRLTLYLKHDDKGFAHPERIQKLVKNYSQFV 300 (801)
Q Consensus 270 T~I~L~Lk~d~~e~~~~~~i~~lIk~ys~fl 300 (801)
|+|++.|.-. |.-..+|.++|++++---
T Consensus 182 T~IeV~Lf~N---~pAR~kI~eyl~r~Al~n 209 (795)
T PRK14868 182 TRIELEMEAN---MRARQQLHDYIKHTAVVN 209 (795)
T ss_pred eEEEEEEEcc---CchhhhHHHHHHHHHhhC
Confidence 9999998654 344667888888766433
No 17
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.41 E-value=1.4e-06 Score=103.06 Aligned_cols=151 Identities=19% Similarity=0.219 Sum_probs=85.7
Q ss_pred HHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcC-CCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHH
Q 003713 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDK-DNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKA 199 (801)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~-~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~ 199 (801)
..++|||.||+||+.... ..+.+.|.+.... +...|+|.|||.||+.+++...|...-. |++ |
T Consensus 39 ~VVkELVeNAIDA~~~~g-----------~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~a-tSK-~--- 102 (659)
T PRK14867 39 TIIHELVTNSLDACEEAE-----------ILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLA-GSK-M--- 102 (659)
T ss_pred HHHHHHHHHHHHHhhccC-----------CCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccc-cCc-c---
Confidence 478999999999985211 0122344443321 1235999999999999999987765322 221 1
Q ss_pred hhccccCCCCCcccccccchhhhhhcccCe-----EEEEEecCCCCCc--EEEEEec--CCCceEEEecCCCCCCCCCcc
Q 003713 200 MKDSKDAGGDSNLIGQFGVGFYSAFLVSDR-----VVVETKSPKSDKQ--YVWEGEA--NASSYTIREETNPEKLLPRGT 270 (801)
Q Consensus 200 ~~~~~~~~~~~~~IGqFGIGf~S~F~vadk-----v~V~Sk~~~~~~~--~~w~s~~--~~~~y~I~~~~~~~~~~~~GT 270 (801)
. .-....|+.|+|+.++-++++. +.|.|+. +.+.. +.|..+- ..|...-...+ ....+||
T Consensus 103 -~------~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~-g~G~~f~i~L~i~i~~n~G~I~~~~~~---~~~~~GT 171 (659)
T PRK14867 103 -H------RLIQSRGQQGIGAAGVLLFSQITTGKPLKITTST-GDGKIHEMEIKMSVEKNEGDIVSHKVR---EGFWRGT 171 (659)
T ss_pred -c------ceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEc-CCCEEEEEEEEEEecccCCeecccccC---CCCCCCc
Confidence 0 0124458999999777655543 6888876 44432 2222221 21222111111 1247999
Q ss_pred EEEEEecCCCccCCCHHHHHHHHHHhccC
Q 003713 271 RLTLYLKHDDKGFAHPERIQKLVKNYSQF 299 (801)
Q Consensus 271 ~I~L~Lk~d~~e~~~~~~i~~lIk~ys~f 299 (801)
+|++.+++-...- .+.++.++|++++--
T Consensus 172 ~Ie~~V~dLFynR-~E~~i~e~l~r~ALa 199 (659)
T PRK14867 172 RVEGEFKEVTYNR-REQGPFEYLRRISLS 199 (659)
T ss_pred EEEEEEeeceech-hhHHHHHHHHHHHHh
Confidence 9997766421110 122477888877643
No 18
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.35 E-value=9.1e-07 Score=105.47 Aligned_cols=161 Identities=19% Similarity=0.212 Sum_probs=99.0
Q ss_pred chHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHH--------HHHHHhh
Q 003713 119 KEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD--------CLGTIAQ 190 (801)
Q Consensus 119 ~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~--------~l~tIa~ 190 (801)
....++|||.||+|++.. .....|.|.++.+ +.|+|.|||.||+.+.... .|+++-.
T Consensus 38 l~~lv~EivdNaiDe~~a--------------g~a~~I~V~i~~d-g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lha 102 (631)
T PRK05559 38 LHHLVQEVIDNSVDEALA--------------GHGKRIEVTLHAD-GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHA 102 (631)
T ss_pred hhhhhhhhhccccchhhc--------------CCCCEEEEEEeCC-CcEEEEEcCCCCCcccccccCCcchheeeeeccc
Confidence 356899999999999731 1224677777655 4899999999999988876 5555433
Q ss_pred cchhhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCceEEEecCCCCCCCCCcc
Q 003713 191 SGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGT 270 (801)
Q Consensus 191 Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~y~I~~~~~~~~~~~~GT 270 (801)
+|+- ... .....-|..|+|.-++=.++.+++|.|+..+ ..|.++..++...-.+...... ....+||
T Consensus 103 gsKf------~~~----~yk~SgGl~GvGls~vNalS~~l~V~s~r~g--~~~~~~f~~G~~~~~l~~~~~~-~~~~~GT 169 (631)
T PRK05559 103 GGKF------SNK----AYKFSGGLHGVGVSVVNALSSRLEVEVKRDG--KVYRQRFEGGDPVGPLEVVGTA-GKRKTGT 169 (631)
T ss_pred cCcc------CCc----cccccCcccccchhhhhhheeeEEEEEEeCC--eEEEEEEECCcCccCccccccc-cCCCCCc
Confidence 3321 100 1224579999999999999999999999732 2243333322011111111110 0146899
Q ss_pred EEEEEecCCC--ccCCCHHHHHHHHHHhccCC-CcCeEee
Q 003713 271 RLTLYLKHDD--KGFAHPERIQKLVKNYSQFV-SFPIYTW 307 (801)
Q Consensus 271 ~I~L~Lk~d~--~e~~~~~~i~~lIk~ys~fl-~~PI~~~ 307 (801)
+|+....... ..-++...|.+.++.++-.. ..-|.++
T Consensus 170 ~V~f~PD~~iF~~~~~~~~~i~~~l~~~A~lnpgl~i~l~ 209 (631)
T PRK05559 170 RVRFWPDPKIFDSPKFSPERLKERLRSKAFLLPGLTITLN 209 (631)
T ss_pred EEEEEECHHHcCCcccCHHHHHHHHHHHHhhCCCeEEEEE
Confidence 9999743221 11236677888888886433 2344443
No 19
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.32 E-value=1.2e-06 Score=80.37 Aligned_cols=80 Identities=28% Similarity=0.456 Sum_probs=58.1
Q ss_pred HHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHh
Q 003713 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAM 200 (801)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~ 200 (801)
..|.||++||+++... ...+.|.+..+.+.-.|+|.|||.||+.+++...+.....+
T Consensus 8 ~il~~ll~Na~~~~~~--------------~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~--------- 64 (111)
T PF02518_consen 8 QILSELLDNAIKHSPE--------------GGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTS--------- 64 (111)
T ss_dssp HHHHHHHHHHHHHHHH--------------TSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHS---------
T ss_pred HHHHHHHHHHHHHhcC--------------CCEEEEEEEEecCeEEEEEEeccccccccccccchhhcccc---------
Confidence 4789999999999852 13456666666666789999999999999998743211111
Q ss_pred hccccCCCCCcccccccchhhhhhcccCe
Q 003713 201 KDSKDAGGDSNLIGQFGVGFYSAFLVSDR 229 (801)
Q Consensus 201 ~~~~~~~~~~~~IGqFGIGf~S~F~vadk 229 (801)
. .+....+.+|+|++.+..++++
T Consensus 65 --~----~~~~~~~g~GlGL~~~~~~~~~ 87 (111)
T PF02518_consen 65 --D----KSETSISGHGLGLYIVKQIAER 87 (111)
T ss_dssp --S----SSSGGSSSSSHHHHHHHHHHHH
T ss_pred --c----ccccccCCCChHHHHHHHHHHH
Confidence 0 1334567799999999988766
No 20
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.28 E-value=1.2e-06 Score=103.96 Aligned_cols=154 Identities=22% Similarity=0.236 Sum_probs=92.2
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH-------HHHHHHhhcchh
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLV-------DCLGTIAQSGTA 194 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~-------~~l~tIa~Sg~~ 194 (801)
.++|||.||+||... .....|.|.++.+ +.|+|.|||.||+.+... +.+.++-..|.+
T Consensus 5 ~v~ElvdNAiD~~~~--------------g~at~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~k 69 (594)
T smart00433 5 LVDEIVDNAADEALA--------------GYMDTIKVTIDKD-NSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGK 69 (594)
T ss_pred EEeeehhcccchhcc--------------CCCCEEEEEEeCC-CeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCC
Confidence 578999999999731 1234677777665 499999999999854321 112222222221
Q ss_pred hHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCce-E-EEecCCCCCCCCCccEE
Q 003713 195 KFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSY-T-IREETNPEKLLPRGTRL 272 (801)
Q Consensus 195 ~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~y-~-I~~~~~~~~~~~~GT~I 272 (801)
| .+ ......-|..|+|..++-.++.+++|.|+..+ ..|.+....+ |.- + +.... .....||+|
T Consensus 70 -f----d~----~~~k~s~G~~G~Gls~vnalS~~l~v~~~~~g--~~~~~~~~~~-G~~~~~~~~~~---~~~~~GT~V 134 (594)
T smart00433 70 -F----DD----DAYKVSGGLHGVGASVVNALSTEFEVEVARDG--KEYKQSFSNN-GKPLSEPKIIG---DTKKDGTKV 134 (594)
T ss_pred -C----CC----CCccccCCcccchHHHHHHhcCceEEEEEeCC--cEEEEEEeCC-CeECccceecC---CCCCCCcEE
Confidence 1 10 01223579999999999999999999999843 3344333221 111 1 11111 124789999
Q ss_pred EEEecCCCccCCC-----HHHHHHHHHHhccCC-CcCeEee
Q 003713 273 TLYLKHDDKGFAH-----PERIQKLVKNYSQFV-SFPIYTW 307 (801)
Q Consensus 273 ~L~Lk~d~~e~~~-----~~~i~~lIk~ys~fl-~~PI~~~ 307 (801)
+. .++..-|.. ...|.+.++.++-.- ..-|.++
T Consensus 135 ~F--~Pd~~~F~~~~~~~~~~i~~rl~~~A~l~pgl~i~l~ 173 (594)
T smart00433 135 TF--KPDLEIFGMTTDDDFELLKRRLRELAFLNKGVKITLN 173 (594)
T ss_pred EE--EECHHHhCCcccchHHHHHHHHHHHHhcCCCcEEEEe
Confidence 95 455444433 366788888886333 2444444
No 21
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.19 E-value=4.7e-06 Score=99.24 Aligned_cols=158 Identities=18% Similarity=0.142 Sum_probs=97.0
Q ss_pred chHHHHHHHHcHHh---HHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHH--------HHHHHHH
Q 003713 119 KEVFLRELISNASD---ALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQD--------LVDCLGT 187 (801)
Q Consensus 119 ~~vflRELIqNA~D---A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~ee--------l~~~l~t 187 (801)
+...+.|||.||+| |. .--+|.|.++.+ +.|+|.|||.||+.++ +.-.|++
T Consensus 31 ~~~lv~ElvdNsiDE~~ag-----------------~a~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~ 92 (625)
T TIGR01055 31 PNHLVQEVIDNSVDEALAG-----------------FASIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILTT 92 (625)
T ss_pred cceeehhhhhcccchhhcC-----------------CCCEEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHHhhhc
Confidence 46799999999999 42 113677777655 7999999999999988 6555544
Q ss_pred HhhcchhhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCc-eEEEecCCCCCCC
Q 003713 188 IAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASS-YTIREETNPEKLL 266 (801)
Q Consensus 188 Ia~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~-y~I~~~~~~~~~~ 266 (801)
.-.+|+- ... .-....|.-|+|.-++=.++.+++|.|++.+ ..|.+...++ .. -.+...... ...
T Consensus 93 lhagsK~------~~~----~~~~SgG~~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G-~~~~~~~~i~~~-~~~ 158 (625)
T TIGR01055 93 LHAGGKF------SNK----NYHFSGGLHGVGISVVNALSKRVKIKVYRQG--KLYSIAFENG-AKVTDLISAGTC-GKR 158 (625)
T ss_pred ccccCCC------CCC----cceecCCCcchhHHHHHHhcCeEEEEEEECC--eEEEEEEECC-eEcccccccccc-CCC
Confidence 4333321 110 1124579999999999999999999998743 2244444333 11 011111000 023
Q ss_pred CCccEEEEEecCCC--ccCCCHHHHHHHHHHhccCC-CcCeEeec
Q 003713 267 PRGTRLTLYLKHDD--KGFAHPERIQKLVKNYSQFV-SFPIYTWQ 308 (801)
Q Consensus 267 ~~GT~I~L~Lk~d~--~e~~~~~~i~~lIk~ys~fl-~~PI~~~~ 308 (801)
.+||+|+..-...- ..-.+..+|.+.++.++-.- ..-|.+++
T Consensus 159 ~~GT~V~F~PD~~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~d 203 (625)
T TIGR01055 159 LTGTSVHFTPDPEIFDSLHFSVSRLYHILRAKAVLCRGVEIEFED 203 (625)
T ss_pred CCCeEEEEEECHHHCCCCccCHHHHHHHHHHHHhhCCCcEEEEee
Confidence 58999998533211 01135567888888875543 34555543
No 22
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.07 E-value=1e-05 Score=96.78 Aligned_cols=156 Identities=22% Similarity=0.238 Sum_probs=92.3
Q ss_pred HHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH-------HHHHHHhhcch
Q 003713 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLV-------DCLGTIAQSGT 193 (801)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~-------~~l~tIa~Sg~ 193 (801)
..++|||-||+|-.. ......|.|.++.+ +.|+|.|||.||+.+.-. +.+.++-.+|.
T Consensus 40 ~~v~ElvdNaiDe~~--------------ag~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~ 104 (638)
T PRK05644 40 HLVYEIVDNSIDEAL--------------AGYCDHIEVTINED-GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGG 104 (638)
T ss_pred hhhHHhhhccccccc--------------CCCCCEEEEEEeCC-CcEEEEEeCccccCCccCCCCCCchHHheeeecccC
Confidence 477899999999431 01123677777654 599999999999986211 11222222222
Q ss_pred hhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCceEEEecCCCCCCCCCccEEE
Q 003713 194 AKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLT 273 (801)
Q Consensus 194 ~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~y~I~~~~~~~~~~~~GT~I~ 273 (801)
+ | .+. ......|..|+|.-++=.++++++|.|+..+ ..|.....++...-.+.... .....||+|+
T Consensus 105 k-f----d~~----~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g--~~~~~~~~~G~~~~~~~~~~---~~~~~GT~I~ 170 (638)
T PRK05644 105 K-F----GGG----GYKVSGGLHGVGVSVVNALSTWLEVEVKRDG--KIYYQEYERGVPVTPLEVIG---ETDETGTTVT 170 (638)
T ss_pred c-c----CCC----cccccCCccccchhhhhheeceEEEEEEeCC--cEEEEEEECCeEccCccccC---CcCCCCcEEE
Confidence 1 1 000 1123579999999999999999999998743 34544443330000112111 1246899999
Q ss_pred EEecCCCccC----CCHHHHHHHHHHhccCC-CcCeEee
Q 003713 274 LYLKHDDKGF----AHPERIQKLVKNYSQFV-SFPIYTW 307 (801)
Q Consensus 274 L~Lk~d~~e~----~~~~~i~~lIk~ys~fl-~~PI~~~ 307 (801)
. .++..-| ++...|.+.++.++-.. ..-|.++
T Consensus 171 F--~Pd~~~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~ 207 (638)
T PRK05644 171 F--KPDPEIFETTEFDYDTLATRLRELAFLNKGLKITLT 207 (638)
T ss_pred E--EECHHHcCCcccCHHHHHHHHHHHHhhCCCcEEEEE
Confidence 6 4443333 35677888888887433 2444444
No 23
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.05 E-value=9.3e-06 Score=97.49 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=90.3
Q ss_pred hHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH-------HHHHHHhhcc
Q 003713 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLV-------DCLGTIAQSG 192 (801)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~-------~~l~tIa~Sg 192 (801)
...++|||-||+|-.. ......|.|.++.+ +.|+|.|||.||+.+--. +.+.++-.+|
T Consensus 32 ~~vv~Elv~NaiDe~~--------------ag~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag 96 (654)
T TIGR01059 32 HHLVYEVVDNSIDEAM--------------AGYCDTINVTINDD-GSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAG 96 (654)
T ss_pred HhhhHHhhhccccccc--------------cCCCCEEEEEEeCC-CcEEEEEeCCCcCccccCcCCCCchHHheeeeccc
Confidence 3478899999999431 01123677777654 469999999999976210 1111221222
Q ss_pred hhhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCceEEEecCCCCCCCCCccEE
Q 003713 193 TAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRL 272 (801)
Q Consensus 193 ~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~y~I~~~~~~~~~~~~GT~I 272 (801)
.+ | .+. ......|..|+|..|+=.++.+++|.|+..+. .|..+..++...-.+...+ .....||+|
T Consensus 97 ~k-f----~~~----~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~--~~~~~~~~G~~~~~l~~~~---~~~~~GT~V 162 (654)
T TIGR01059 97 GK-F----DKD----SYKVSGGLHGVGVSVVNALSEWLEVTVFRDGK--IYRQEFERGIPLGPLEVVG---ETKKTGTTV 162 (654)
T ss_pred Cc-c----CCC----cceecCCccchhHHHHHHhcCeEEEEEEECCe--EEEEEEeCCCcccCceecc---CCCCCCcEE
Confidence 21 1 100 12245799999999999999999999987432 2433333330111111111 135799999
Q ss_pred EEEecCCCccC----CCHHHHHHHHHHhccCCCcCeEe
Q 003713 273 TLYLKHDDKGF----AHPERIQKLVKNYSQFVSFPIYT 306 (801)
Q Consensus 273 ~L~Lk~d~~e~----~~~~~i~~lIk~ys~fl~~PI~~ 306 (801)
+..-. ..-| .+...|.+.++.++ ++.--|.+
T Consensus 163 ~F~pd--p~~F~~~~~e~~~i~~rl~~~A-~l~pgl~i 197 (654)
T TIGR01059 163 RFWPD--PEIFETTEFDFDILAKRLRELA-FLNSGVKI 197 (654)
T ss_pred EEEEC--hHHhCCcccCHHHHHHHHHHhh-ccCCCeEE
Confidence 95533 3234 26677888888888 44323443
No 24
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=97.96 E-value=1.9e-05 Score=90.29 Aligned_cols=160 Identities=20% Similarity=0.273 Sum_probs=99.2
Q ss_pred hcCCCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCC-cEEEEEeCCCCCCHHHHHHHHHHHhhc
Q 003713 113 NSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDN-GIITITDSGIGMTQQDLVDCLGTIAQS 191 (801)
Q Consensus 113 ~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DNGiGMt~eel~~~l~tIa~S 191 (801)
-.+..-|.-+|.|||-|+.||.. ..|.|.+-.++ +.|.|.|||.|+-++||.=..-....|
T Consensus 22 GEVI~RP~NAlKEliENSLDA~S------------------T~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 22 GEVIQRPVNALKELIENSLDANS------------------TSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred cchhhchHHHHHHHHhccccCCC------------------ceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhh
Confidence 34666788999999999999962 46777665444 567899999999999998544444444
Q ss_pred chhhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEE-ecCCCceEEEecCCCCCCCCCcc
Q 003713 192 GTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEG-EANASSYTIREETNPEKLLPRGT 270 (801)
Q Consensus 192 g~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s-~~~~~~y~I~~~~~~~~~~~~GT 270 (801)
-=..|-+-. ..+-.|..|=.+ ++..-+-+|+|+|+...+ ..-|.. ..+ |... ..+.+ -....||
T Consensus 84 KL~kFEDL~--------~lsTyGFRGEAL-ASiShVA~VtV~TK~~~~--~cayrasY~D-Gkm~--~~pKp-cAgk~GT 148 (694)
T KOG1979|consen 84 KLTKFEDLF--------SLSTYGFRGEAL-ASISHVAHVTVTTKTAEG--KCAYRASYRD-GKMI--ATPKP-CAGKQGT 148 (694)
T ss_pred hcchhHHHH--------hhhhcCccHHHH-hhhhheeEEEEEEeecCc--eeeeEEEeec-cccc--cCCCC-ccCCCce
Confidence 322332111 112345455444 555555799999999543 344442 233 4433 22222 2357899
Q ss_pred EEEEE------------ecCCCccCCCHHHHHHHHHHhccCCCcCeEeecc
Q 003713 271 RLTLY------------LKHDDKGFAHPERIQKLVKNYSQFVSFPIYTWQE 309 (801)
Q Consensus 271 ~I~L~------------Lk~d~~e~~~~~~i~~lIk~ys~fl~~PI~~~~~ 309 (801)
.|++. |+...+|| .+|-.++.+|+-+=+ -|.+.++
T Consensus 149 ~I~vedLFYN~~~Rrkal~~~~EE~---~ki~dlv~ryAIHn~-~VsFs~r 195 (694)
T KOG1979|consen 149 IITVEDLFYNMPTRRKALRNHAEEY---RKIMDLVGRYAIHNP-RVSFSLR 195 (694)
T ss_pred EEEehHhhccCHHHHHHhcCcHHHH---HHHHHHHHHHheeCC-CcceEEe
Confidence 99986 34444444 678888999987642 3444443
No 25
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=97.90 E-value=2.1e-05 Score=91.80 Aligned_cols=158 Identities=18% Similarity=0.214 Sum_probs=94.5
Q ss_pred HHHHhcCCCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcC-CCcEEEEEeCCCCCCHHHHHHHHHH
Q 003713 109 DLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDK-DNGIITITDSGIGMTQQDLVDCLGT 187 (801)
Q Consensus 109 ~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~-~~~~l~I~DNGiGMt~eel~~~l~t 187 (801)
.|-+.+...+...+++|||-||.||++ ..|.|.++. +-..|.|.|||.|++..+..-.-..
T Consensus 11 rI~S~qvI~sl~sAVKELvENSiDAGA------------------T~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lk 72 (672)
T KOG1978|consen 11 RICSSQVITSLVSAVKELVENSIDAGA------------------TAIDIKVKDYGSDSIEVSDNGSGISATDFEGLALK 72 (672)
T ss_pred ccccCCeeccHHHHHHHHHhcCcccCC------------------ceeeEecCCCCcceEEEecCCCCCCccchhhhhhh
Confidence 344445556777999999999999984 245555543 3468999999999999987751111
Q ss_pred HhhcchhhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCceE-EEecCCCCCCC
Q 003713 188 IAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYT-IREETNPEKLL 266 (801)
Q Consensus 188 Ia~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~y~-I~~~~~~~~~~ 266 (801)
--.|.-..|-+- ....-.|..|=-+ |+.+--..|.|.|++.....+..|.-+.. |..+ ..++ ..
T Consensus 73 h~TSKi~~f~Dl--------~~l~T~GFRGEAL-SsLCa~~dv~I~Trt~~~~vgt~l~~Dh~-G~I~~k~~~-----ar 137 (672)
T KOG1978|consen 73 HTTSKIVSFADL--------AVLFTLGFRGEAL-SSLCALGDVMISTRSHSAKVGTRLVYDHD-GHIIQKKPV-----AR 137 (672)
T ss_pred hhhhcccchhhh--------hhhhhhhhHHHHH-HhhhhccceEEEEeeccCccceeEEEccC-Cceeeeccc-----cC
Confidence 111111122110 0112234444434 66666667888888854455888888777 6554 2222 35
Q ss_pred CCccEEEEE-e----cCCCccCC-----CHHHHHHHHHHhccC
Q 003713 267 PRGTRLTLY-L----KHDDKGFA-----HPERIQKLVKNYSQF 299 (801)
Q Consensus 267 ~~GT~I~L~-L----k~d~~e~~-----~~~~i~~lIk~ys~f 299 (801)
++||+|++. | .--..+|- +-.++..+|..|+-+
T Consensus 138 ~~GTTV~v~~LF~tLPVR~kef~r~~Kref~k~i~li~~y~li 180 (672)
T KOG1978|consen 138 GRGTTVMVRQLFSTLPVRRKEFQRNIKRKFVKLISLIQAYALI 180 (672)
T ss_pred CCCCEEEHhhhcccCCCchHHhhcchhhhhhhHHhhHHHHHhh
Confidence 899999987 1 11111221 124466778888754
No 26
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=97.88 E-value=2.4e-05 Score=94.45 Aligned_cols=155 Identities=18% Similarity=0.248 Sum_probs=92.2
Q ss_pred hHHHHHHHHcHHh-HHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHH----------HHHHHHHHH
Q 003713 120 EVFLRELISNASD-ALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQ----------DLVDCLGTI 188 (801)
Q Consensus 120 ~vflRELIqNA~D-A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~e----------el~~~l~tI 188 (801)
...++|||.||+| |++ ..--.|.|.++.+ +.|+|.|||.||+.+ |+. |+..
T Consensus 39 hhlv~EivdNaiDE~~A---------------G~a~~I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elv--lt~l 100 (756)
T PRK14939 39 HHMVYEVVDNAIDEALA---------------GHCDDITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVI--MTVL 100 (756)
T ss_pred hhhhhHhhccccccccc---------------CCCCEEEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhhe--eeee
Confidence 3589999999999 221 1123677777664 599999999999987 443 2222
Q ss_pred hhcchhhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCceEEEecCCCCCCCCC
Q 003713 189 AQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPR 268 (801)
Q Consensus 189 a~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~y~I~~~~~~~~~~~~ 268 (801)
..|.+ | ... .-.-.-|.-|+|.-++=.++++++|.|++.+ ..|..+...+...-.+.... ....+
T Consensus 101 -hAggK-f----d~~----~ykvSgGlhGvG~svvNAlS~~l~v~v~r~g--k~~~q~f~~G~~~~~l~~~g---~~~~~ 165 (756)
T PRK14939 101 -HAGGK-F----DQN----SYKVSGGLHGVGVSVVNALSEWLELTIRRDG--KIHEQEFEHGVPVAPLKVVG---ETDKT 165 (756)
T ss_pred -cccCC-C----CCC----cccccCCccCccceEeehccCeEEEEEEeCC--eEEEEEEecCccccCccccC---CcCCC
Confidence 22222 1 100 1112469999999999999999999998733 23433333220110122111 12468
Q ss_pred ccEEEEEecCCC--ccCCCHHHHHHHHHHhccCCC--cCeEeec
Q 003713 269 GTRLTLYLKHDD--KGFAHPERIQKLVKNYSQFVS--FPIYTWQ 308 (801)
Q Consensus 269 GT~I~L~Lk~d~--~e~~~~~~i~~lIk~ys~fl~--~PI~~~~ 308 (801)
||+|+......- ..-++...|.+.++.++ |+. .-|.+++
T Consensus 166 GT~V~F~PD~~iF~~~~~~~~~i~~rl~elA-~lnpgl~i~l~d 208 (756)
T PRK14939 166 GTEVRFWPSPEIFENTEFDYDILAKRLRELA-FLNSGVRIRLKD 208 (756)
T ss_pred CcEEEEEECHHHcCCcccCHHHHHHHHHHHh-hcCCCCEEEEec
Confidence 999999633221 11236677888888776 553 4445543
No 27
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.40 E-value=9.8e-05 Score=85.90 Aligned_cols=127 Identities=21% Similarity=0.248 Sum_probs=77.7
Q ss_pred CchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHH
Q 003713 118 NKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFL 197 (801)
Q Consensus 118 ~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~ 197 (801)
+-.-+++||++|++||.+ ..|.|.++-..-.+.|.|||+||+++||.. || .+.|.
T Consensus 21 sla~~VeElv~NSiDA~A------------------t~V~v~V~~~t~sv~ViDdG~G~~rdDl~~-lg------~ry~T 75 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDAEA------------------TCVAVRVNMETFSVQVIDDGFGMGRDDLEK-LG------NRYFT 75 (1142)
T ss_pred HHHHHHHHHHhhccccCc------------------eEEEEEecCceeEEEEEecCCCccHHHHHH-HH------hhhhh
Confidence 345599999999999974 255666666778899999999999999986 43 33333
Q ss_pred HHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEE--EEecCCCceEEEecCCCCCCCCCccEEEEE
Q 003713 198 KAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVW--EGEANASSYTIREETNPEKLLPRGTRLTLY 275 (801)
Q Consensus 198 ~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w--~s~~~~~~y~I~~~~~~~~~~~~GT~I~L~ 275 (801)
.+...-++. ......|..|-.++|.--++. ++|+|++.+...++.. ...|. ....-+.+. .+...||+|+++
T Consensus 76 SK~h~~ndl-~~~~tyGfRGeALasIsd~s~-l~v~skkk~r~~~~~~kk~~~gs--~~~~l~iD~--~R~~sGTtVtV~ 149 (1142)
T KOG1977|consen 76 SKCHSVNDL-ENPRTYGFRGEALASISDMSS-LVVISKKKNRTMKTFVKKFQSGS--ALKALEIDV--TRASSGTTVTVY 149 (1142)
T ss_pred hhceecccc-ccccccccchhhhhhhhhhhh-hhhhhhhcCCchhHHHHHHhccc--cceeccccc--ccccCCcEEEeH
Confidence 333211111 123456888877877666643 5567766444333321 11122 111112221 256899999998
No 28
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.27 E-value=0.0014 Score=56.76 Aligned_cols=86 Identities=24% Similarity=0.348 Sum_probs=57.3
Q ss_pred HHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHh
Q 003713 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAM 200 (801)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~ 200 (801)
.+++|||.||.++... ....+.|.+..+...-.|.|.|+|.||+...+...+...+.+
T Consensus 3 ~~~~~ll~Na~~~~~~-------------~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~--------- 60 (103)
T cd00075 3 QVLLNLLSNAIKHTPE-------------GGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG--------- 60 (103)
T ss_pred HHHHHHHHHHHHhCcC-------------CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---------
Confidence 4789999999999742 023345555554444578999999999999987654322000
Q ss_pred hccccCCCCCcccccccchhhhhhcccC----eEEEEEe
Q 003713 201 KDSKDAGGDSNLIGQFGVGFYSAFLVSD----RVVVETK 235 (801)
Q Consensus 201 ~~~~~~~~~~~~IGqFGIGf~S~F~vad----kv~V~Sk 235 (801)
......+.+|+|++.+-.+++ .+.+.+.
T Consensus 61 -------~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~ 92 (103)
T cd00075 61 -------SRSRKGGGTGLGLSIVKKLVELHGGRIEVESE 92 (103)
T ss_pred -------CCCCCCCccccCHHHHHHHHHHcCCEEEEEeC
Confidence 112334689999998887776 6666553
No 29
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.95 E-value=0.0015 Score=71.91 Aligned_cols=101 Identities=17% Similarity=0.343 Sum_probs=62.4
Q ss_pred HHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHh
Q 003713 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAM 200 (801)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~ 200 (801)
..+..||.||+.+.. ....+.|.+..+.+.-.|+|.|||+||+.+++.+.+ ..+.+
T Consensus 250 ~il~nLi~NA~k~~~--------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if----~~f~~------ 305 (356)
T PRK10755 250 LLLRNLVENAHRYSP--------------EGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELS----KAFVR------ 305 (356)
T ss_pred HHHHHHHHHHHhhCC--------------CCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhC----CCeEe------
Confidence 367888888876631 223455665555555689999999999999987632 11110
Q ss_pred hccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCceEEEecCCCCCCCCCccEEEEEecC
Q 003713 201 KDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLTLYLKH 278 (801)
Q Consensus 201 ~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~y~I~~~~~~~~~~~~GT~I~L~Lk~ 278 (801)
.+ ..-|.+|+|++-|-.+++. . + |.+.+...+ ...||+|++.+..
T Consensus 306 -------~~-~~~~g~GlGL~i~~~i~~~------~-g-------------g~i~i~s~~-----~~~Gt~~~i~~p~ 350 (356)
T PRK10755 306 -------MD-SRYGGIGLGLSIVSRITQL------H-H-------------GQFFLQNRQ-----ERSGTRAWVWLPK 350 (356)
T ss_pred -------CC-CCCCCcCHHHHHHHHHHHH------C-C-------------CEEEEEECC-----CCCeEEEEEEecC
Confidence 01 1125689999877666542 1 1 345555422 1278999888754
No 30
>PRK10604 sensor protein RstB; Provisional
Probab=96.78 E-value=0.0025 Score=72.73 Aligned_cols=77 Identities=14% Similarity=0.270 Sum_probs=48.4
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhh
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~~ 201 (801)
.+..||.||+.+. ...+.|.+..+.+.-.|+|.|||.||+.+++.+.+....+. .
T Consensus 323 vl~NLl~NAik~~----------------~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~---------~ 377 (433)
T PRK10604 323 VLDNLLNNALRYA----------------HSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRL---------D 377 (433)
T ss_pred HHHHHHHHHHHhC----------------CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccC---------C
Confidence 5778888887663 12355666666555679999999999999988743211110 0
Q ss_pred ccccCCCCCcccccccchhhhhhcccC
Q 003713 202 DSKDAGGDSNLIGQFGVGFYSAFLVSD 228 (801)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~vad 228 (801)
. .....-|.+|+|++-+-.+++
T Consensus 378 -~----~~~~~~~g~GLGL~ivk~i~~ 399 (433)
T PRK10604 378 -P----SRDRATGGCGLGLAIVHSIAL 399 (433)
T ss_pred -C----CCCCCCCCccchHHHHHHHHH
Confidence 0 111234678999976655543
No 31
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.73 E-value=0.0035 Score=70.96 Aligned_cols=48 Identities=23% Similarity=0.390 Sum_probs=35.7
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCL 185 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l 185 (801)
.+++||+||..+. ...+.|++..+.+.-.|+|.|||+||+.+++.+.+
T Consensus 357 ~l~nli~NA~~~~----------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 404 (461)
T PRK09470 357 ALENIVRNALRYS----------------HTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIF 404 (461)
T ss_pred HHHHHHHHHHHhC----------------CCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhc
Confidence 5788888888653 12356666666555679999999999999887643
No 32
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.73 E-value=0.0028 Score=76.76 Aligned_cols=73 Identities=25% Similarity=0.323 Sum_probs=45.4
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhh
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~~ 201 (801)
.+.+||+||.++.. ....+.|++..+.+.-.|+|.|||.||+.+.+.+.+. ....
T Consensus 583 vl~nLl~NAik~~~--------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF---~pf~-------- 637 (679)
T TIGR02916 583 VLGHLVQNALEATP--------------GEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLF---KPFD-------- 637 (679)
T ss_pred HHHHHHHHHHHhCC--------------CCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcC---CCCC--------
Confidence 56788888877741 1233455554444445789999999999998554331 1110
Q ss_pred ccccCCCCCcccccccchhhhhhccc
Q 003713 202 DSKDAGGDSNLIGQFGVGFYSAFLVS 227 (801)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~va 227 (801)
. .+ . +..|+|++.+-.++
T Consensus 638 ~-----~~-~--~G~GLGL~i~~~iv 655 (679)
T TIGR02916 638 T-----TK-G--AGMGIGVYECRQYV 655 (679)
T ss_pred C-----CC-C--CCcchhHHHHHHHH
Confidence 0 11 1 56899998886664
No 33
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.72 E-value=0.0037 Score=71.11 Aligned_cols=80 Identities=16% Similarity=0.272 Sum_probs=47.7
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhh
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~~ 201 (801)
.+..||.||+.+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+.+...-+. .
T Consensus 356 vl~nll~NAi~~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~-~-------- 412 (466)
T PRK10549 356 LFNNLLENSLRYTD--------------SGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRT-E-------- 412 (466)
T ss_pred HHHHHHHHHHHhCC--------------CCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccC-C--------
Confidence 56677777776631 123345555554444578999999999999887643211110 0
Q ss_pred ccccCCCCCcccccccchhhhhhcccCe
Q 003713 202 DSKDAGGDSNLIGQFGVGFYSAFLVSDR 229 (801)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~vadk 229 (801)
. ......|..|+|++-+-.+++.
T Consensus 413 -~----~~~~~~~g~GlGL~iv~~i~~~ 435 (466)
T PRK10549 413 -G----SRNRASGGSGLGLAICLNIVEA 435 (466)
T ss_pred -C----CcCCCCCCCcHHHHHHHHHHHH
Confidence 0 1122456789999876655443
No 34
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.67 E-value=0.0064 Score=68.82 Aligned_cols=101 Identities=21% Similarity=0.202 Sum_probs=60.5
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhh
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~~ 201 (801)
.+.+||.||+.+.. ....+.|.+..+.+.-.|+|+|||.||+.+++.+.+. ...+..
T Consensus 372 vl~nli~Na~~~~~--------------~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~-~~~~~~-------- 428 (475)
T PRK11100 372 ALGNLLDNAIDFSP--------------EGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFE-RFYSLP-------- 428 (475)
T ss_pred HHHHHHHHHHHhCC--------------CCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHH-HHccCC--------
Confidence 57778888777631 2233455555555556799999999999999887442 212110
Q ss_pred ccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCceEEEecCCCCCCCCCccEEEEEec
Q 003713 202 DSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLTLYLK 277 (801)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~y~I~~~~~~~~~~~~GT~I~L~Lk 277 (801)
.....-+..|+|++.|-.++.. . + |.+.+...+ +.||+|++.+.
T Consensus 429 ------~~~~~~~~~GlGL~i~~~~~~~------~-~-------------G~i~i~s~~------~~Gt~v~i~lp 472 (475)
T PRK11100 429 ------RPANGRKSTGLGLAFVREVARL------H-G-------------GEVTLRNRP------EGGVLATLTLP 472 (475)
T ss_pred ------CCCCCCCCcchhHHHHHHHHHH------C-C-------------CEEEEEEcC------CCeEEEEEEee
Confidence 0011224579999887665432 1 1 445555422 46898888764
No 35
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=96.65 E-value=0.0026 Score=56.01 Aligned_cols=80 Identities=24% Similarity=0.332 Sum_probs=53.1
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhh
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~~ 201 (801)
.+.|++.||.++... ...+.|.+..+.....|.|.|+|.||+.+.+...+.... ++.
T Consensus 9 ~~~~l~~n~~~~~~~--------------~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~-~~~-------- 65 (111)
T smart00387 9 VLSNLLDNAIKYTPE--------------GGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFF-RTD-------- 65 (111)
T ss_pred HHHHHHHHHHhcCCC--------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeE-ECC--------
Confidence 678888888887631 234566666655556899999999999988877542211 110
Q ss_pred ccccCCCCCcccccccchhhhhhcccCeE
Q 003713 202 DSKDAGGDSNLIGQFGVGFYSAFLVSDRV 230 (801)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~vadkv 230 (801)
......+++|+|++.+-.++++.
T Consensus 66 ------~~~~~~~~~g~gl~~~~~~~~~~ 88 (111)
T smart00387 66 ------GRSRKIGGTGLGLSIVKKLVELH 88 (111)
T ss_pred ------CCCCCCCcccccHHHHHHHHHHc
Confidence 11234577999999887776553
No 36
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.64 E-value=0.005 Score=69.44 Aligned_cols=100 Identities=18% Similarity=0.247 Sum_probs=59.8
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhh
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~~ 201 (801)
++.+||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+.+.+.|-..-++..
T Consensus 357 ~~~nll~Nai~~~~--------------~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~-------- 414 (457)
T TIGR01386 357 AISNLLSNALRHTP--------------DGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDP-------- 414 (457)
T ss_pred HHHHHHHHHHHcCC--------------CCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCc--------
Confidence 56777777776631 12334555554444457999999999999988874432211110
Q ss_pred ccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCceEEEecCCCCCCCCCccEEEEEe
Q 003713 202 DSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLTLYL 276 (801)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~y~I~~~~~~~~~~~~GT~I~L~L 276 (801)
.....-+..|+|++-+--++++ . + |++++.. + +.||+|+|.+
T Consensus 415 ------~~~~~~~g~GlGL~i~~~~~~~------~-~-------------G~~~~~~-~------~~G~~~~~~~ 456 (457)
T TIGR01386 415 ------ARSNSGEGTGLGLAIVRSIMEA------H-G-------------GRASAES-P------DGKTRFILRF 456 (457)
T ss_pred ------ccCCCCCCccccHHHHHHHHHH------C-C-------------CEEEEEe-C------CCceEEEEec
Confidence 0112245689999876655432 1 1 4566654 3 4788888765
No 37
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=96.57 E-value=0.0053 Score=73.76 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=90.2
Q ss_pred HHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH-------HH-HHHHhhcc
Q 003713 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLV-------DC-LGTIAQSG 192 (801)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~-------~~-l~tIa~Sg 192 (801)
..+.|+|.||+|=.. ...--.|.|.+++ ++.|+|.|||-||..+--. +. |+++-.+|
T Consensus 37 hlv~EIvdNavDE~~--------------ag~~~~I~V~i~~-dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGg 101 (637)
T TIGR01058 37 HLVWEIVDNSVDEVL--------------AGYADNITVTLHK-DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGG 101 (637)
T ss_pred eehhhhhcchhhhhh--------------cCCCcEEEEEEcC-CCeEEEEECCCcccCcccCcCCCccceeEEEEecccC
Confidence 356799999999531 1122367777774 4699999999999864211 11 11111112
Q ss_pred hhhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCceEEEecCCCCCCCCCccEE
Q 003713 193 TAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRL 272 (801)
Q Consensus 193 ~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~y~I~~~~~~~~~~~~GT~I 272 (801)
+ | .+ ..-.-.-|.-|+|.-.+=.++++++|.+++.+..-.-.|+. |+ ..+.+.........+||+|
T Consensus 102 k--f----d~----~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~gk~~~q~f~~-Gg---~~~~~l~~~~~~~~~GT~V 167 (637)
T TIGR01058 102 K--F----DQ----GGYKTAGGLHGVGASVVNALSSWLEVTVKRDGQIYQQRFEN-GG---KIVQSLKKIGTTKKTGTLV 167 (637)
T ss_pred c--C----CC----CcccccCCcccccccccceeeceEEEEEEECCEEEEEEEec-CC---cCcCCcccccCCCCCceEE
Confidence 1 1 00 01113458999999888899999999998732211223432 11 1111111000124689999
Q ss_pred EEEecCCC--ccCCCHHHHHHHHHHhccCC-CcCeEeec
Q 003713 273 TLYLKHDD--KGFAHPERIQKLVKNYSQFV-SFPIYTWQ 308 (801)
Q Consensus 273 ~L~Lk~d~--~e~~~~~~i~~lIk~ys~fl-~~PI~~~~ 308 (801)
+.....+- ..-++.+.|.+-++..+-.. ..-|++++
T Consensus 168 ~F~PD~~iF~~~~f~~d~l~~RlrelA~Ln~GL~I~l~d 206 (637)
T TIGR01058 168 HFHPDPTIFKTTQFNSNIIKERLKESAFLLKKLKLTFTD 206 (637)
T ss_pred EEEeCHHHcCCCccCHHHHHHHHHHHhccCCCcEEEEEe
Confidence 88755432 11136677877777766433 46677764
No 38
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.49 E-value=0.0052 Score=69.49 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=36.5
Q ss_pred HHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEE--cCCCcEEEEEeCCCCCCHHHHHHHH
Q 003713 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQT--DKDNGIITITDSGIGMTQQDLVDCL 185 (801)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DNGiGMt~eel~~~l 185 (801)
..|..|+.||.+++... ......|.|.. +.+.-.|+|.|||+||+.+...+.|
T Consensus 390 ~vl~Nl~~NAik~~~~~------------~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF 444 (494)
T TIGR02938 390 SLFKALVDNAIEAMNIK------------GWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVF 444 (494)
T ss_pred HHHHHHHHHHHHHhhcc------------CCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhc
Confidence 37899999999997421 01122455443 3344578999999999998887644
No 39
>PLN03237 DNA topoisomerase 2; Provisional
Probab=96.39 E-value=0.0098 Score=76.06 Aligned_cols=163 Identities=18% Similarity=0.254 Sum_probs=93.8
Q ss_pred HHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH-------H-HHHHHhhcc
Q 003713 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLV-------D-CLGTIAQSG 192 (801)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~-------~-~l~tIa~Sg 192 (801)
..+.|.|.||+|-.. | +...-.|.|+++.+++.|+|.|||-||.-+--. . .|+++-.||
T Consensus 80 kifdEIldNAvDe~~--r-----------~g~~~~I~V~I~~~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGg 146 (1465)
T PLN03237 80 KIFDEILVNAADNKQ--R-----------DPKMDSLRVVIDVEQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSS 146 (1465)
T ss_pred hhHHHHhhhhHhHHh--h-----------cCCCCEEEEEEEcCCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccc
Confidence 478899999999752 1 123347888888888899999999998765211 1 122222222
Q ss_pred hhhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcE--EEEEecCCCce-EEEecCCCCCCCCCc
Q 003713 193 TAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQY--VWEGEANASSY-TIREETNPEKLLPRG 269 (801)
Q Consensus 193 ~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~--~w~s~~~~~~y-~I~~~~~~~~~~~~G 269 (801)
+ | .+. ...-.-|+-|+|.-.+=.++.+++|.++.......| .|+.+.+...- .+.... ...+|
T Consensus 147 k--F----dd~----~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~~~----~~~~G 212 (1465)
T PLN03237 147 N--Y----DDN----EKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITKCK----KSENW 212 (1465)
T ss_pred c--C----CCC----cceeeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceeccCC----CCCCc
Confidence 2 1 110 122346999999988999999999999731122333 55532120111 122111 13689
Q ss_pred cEEEEEecCCC--ccCCCHHHHHHHHHH---hccCC--CcCeEeeccc
Q 003713 270 TRLTLYLKHDD--KGFAHPERIQKLVKN---YSQFV--SFPIYTWQEK 310 (801)
Q Consensus 270 T~I~L~Lk~d~--~e~~~~~~i~~lIk~---ys~fl--~~PI~~~~~~ 310 (801)
|+|+..-...- ..-++.+.|..+.++ .+.|+ ..-|++++++
T Consensus 213 T~VtF~PD~eiF~~~~fd~D~l~~~~rRlrdLAa~LnkGlkI~LndeR 260 (1465)
T PLN03237 213 TKVTFKPDLAKFNMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNGKR 260 (1465)
T ss_pred eEEEEEECHHHhCCceEcHHHHHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 99987733321 111356666544333 34566 4778887654
No 40
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.31 E-value=0.0079 Score=68.33 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=48.0
Q ss_pred HHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHh
Q 003713 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAM 200 (801)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~ 200 (801)
..+..||+||+.+.. ....+.|.+..+.+.-.|+|.|||+||+.+++.+.+-..-+ ..
T Consensus 320 ~vl~NLl~NAik~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~-~~------- 377 (430)
T PRK11006 320 SAISNLVYNAVNHTP--------------EGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYR-VD------- 377 (430)
T ss_pred HHHHHHHHHHHhcCC--------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCccc-cc-------
Confidence 367788899888752 12234444444444557999999999999998774321100 00
Q ss_pred hccccCCCCCcccccccchhhhhhccc
Q 003713 201 KDSKDAGGDSNLIGQFGVGFYSAFLVS 227 (801)
Q Consensus 201 ~~~~~~~~~~~~IGqFGIGf~S~F~va 227 (801)
+ ......|..|+|++-|-.++
T Consensus 378 ~------~~~~~~~G~GLGL~ivk~iv 398 (430)
T PRK11006 378 K------ARSRQTGGSGLGLAIVKHAL 398 (430)
T ss_pred C------CCCCCCCCCchHHHHHHHHH
Confidence 0 11123366799998776554
No 41
>PRK10364 sensor protein ZraS; Provisional
Probab=96.30 E-value=0.011 Score=67.77 Aligned_cols=50 Identities=24% Similarity=0.299 Sum_probs=35.5
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCL 185 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l 185 (801)
.+..||.||++|+. ....+.|.+..+.+.-.|+|.|||.||+.+.+.+.|
T Consensus 352 il~NLl~NA~k~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 401 (457)
T PRK10364 352 VLLNLYLNAIQAIG--------------QHGVISVTASESGAGVKISVTDSGKGIAADQLEAIF 401 (457)
T ss_pred HHHHHHHHHHHhcC--------------CCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHh
Confidence 46678888888852 123355555555555689999999999999887643
No 42
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=96.29 E-value=0.0077 Score=74.80 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=34.5
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCL 185 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l 185 (801)
.|..||+||+.+.. ...+.|++..+.+.-.|+|.|||+||+.+++.+.|
T Consensus 517 il~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 565 (921)
T PRK15347 517 ILVNLLGNAVKFTE---------------TGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIF 565 (921)
T ss_pred HHHHHHHHHhhcCC---------------CCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHh
Confidence 56778888887641 22345555554444578999999999999987743
No 43
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.15 E-value=0.017 Score=72.25 Aligned_cols=74 Identities=19% Similarity=0.340 Sum_probs=49.4
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCC-cEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHh
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDN-GIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAM 200 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~ 200 (801)
.|..||+||+.+.. ...+.|.+....+. -.|.|.|||+||+.+++.+.|-...+.
T Consensus 583 il~nLi~NAik~~~---------------~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~--------- 638 (968)
T TIGR02956 583 VLINLVGNAIKFTD---------------RGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQA--------- 638 (968)
T ss_pred HHHHHHHHHHhhCC---------------CCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhcc---------
Confidence 67889999988741 23456666666555 679999999999999988754222111
Q ss_pred hccccCCCCCcccccccchhhhhhcc
Q 003713 201 KDSKDAGGDSNLIGQFGVGFYSAFLV 226 (801)
Q Consensus 201 ~~~~~~~~~~~~IGqFGIGf~S~F~v 226 (801)
......|..|+|++-|-.+
T Consensus 639 -------~~~~~~~g~GLGL~i~~~l 657 (968)
T TIGR02956 639 -------DGRRRSGGTGLGLAISQRL 657 (968)
T ss_pred -------CCCCCCCCccHHHHHHHHH
Confidence 1112236789999866544
No 44
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.15 E-value=0.013 Score=68.22 Aligned_cols=98 Identities=15% Similarity=0.241 Sum_probs=61.0
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhh
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~~ 201 (801)
.+.-||.||+.++. ..+.|.+..+.+.-.|+|.|||.||+.+++...| ..+.+
T Consensus 382 vl~NLi~NAik~~~----------------~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF----~~f~~------- 434 (485)
T PRK10815 382 VMGNVLDNACKYCL----------------EFVEISARQTDEHLHIVVEDDGPGIPESKRELIF----DRGQR------- 434 (485)
T ss_pred HHHHHHHHHHHhcC----------------CcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHh----CCccc-------
Confidence 56778888877752 1245555554444579999999999999987643 11110
Q ss_pred ccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCceEEEecCCCCCCCCCccEEEEEecCC
Q 003713 202 DSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLTLYLKHD 279 (801)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~y~I~~~~~~~~~~~~GT~I~L~Lk~d 279 (801)
.+ ..-+..|+|++-|--+++. + + |.+.+... ...||++++.+...
T Consensus 435 ------~~-~~~~G~GLGL~Ivk~iv~~------~-g-------------G~i~v~s~------~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 435 ------AD-TLRPGQGLGLSVAREITEQ------Y-E-------------GKISAGDS------PLGGARMEVIFGRQ 479 (485)
T ss_pred ------CC-CCCCCcchhHHHHHHHHHH------c-C-------------CEEEEEEC------CCCEEEEEEEEcCC
Confidence 01 1123579999877666431 2 1 45666543 25799999988754
No 45
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.14 E-value=0.019 Score=66.51 Aligned_cols=53 Identities=17% Similarity=0.327 Sum_probs=36.7
Q ss_pred HHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHH
Q 003713 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCL 185 (801)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l 185 (801)
..+.+|+.||.+|+.. .....+.|++..+.+.-.|+|.|||.||+.+++.+.|
T Consensus 436 ~vl~nLl~NAi~~~~~------------~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF 488 (542)
T PRK11086 436 TILGNLIENALEAVGG------------EEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIF 488 (542)
T ss_pred HHHHHHHHHHHHHhhc------------CCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHH
Confidence 3577999999999731 0122344444444444578999999999999988754
No 46
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.11 E-value=0.013 Score=72.88 Aligned_cols=73 Identities=25% Similarity=0.406 Sum_probs=46.7
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhh
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~~ 201 (801)
.|..||+||+.+.. ...+.|.+..+...-.|.|.|||+||+.+++.+.|.. |...
T Consensus 565 il~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~--------f~~~-- 619 (914)
T PRK11466 565 VITNLLSNALRFTD---------------EGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQP--------FVQV-- 619 (914)
T ss_pred HHHHHHHHHHHhCC---------------CCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhch--------hhcC--
Confidence 57788888887741 2234555555444457999999999999998874421 1100
Q ss_pred ccccCCCCCcccccccchhhhhhccc
Q 003713 202 DSKDAGGDSNLIGQFGVGFYSAFLVS 227 (801)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~va 227 (801)
....|..|+|++-|-.++
T Consensus 620 --------~~~~~g~GLGL~i~~~l~ 637 (914)
T PRK11466 620 --------SGKRGGTGLGLTISSRLA 637 (914)
T ss_pred --------CCCCCCCcccHHHHHHHH
Confidence 112367899998765554
No 47
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.05 E-value=0.016 Score=73.32 Aligned_cols=162 Identities=19% Similarity=0.264 Sum_probs=89.2
Q ss_pred HHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH-------H-HHHHHhhcc
Q 003713 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLV-------D-CLGTIAQSG 192 (801)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~-------~-~l~tIa~Sg 192 (801)
..+.|.|.||+|-.. + +..--.|.|+++.+++.|+|.|||-||.-+--. . .|+++-.||
T Consensus 55 ki~dEIldNAvDe~~--~-----------~g~~~~I~V~i~~~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGg 121 (1135)
T PLN03128 55 KIFDEILVNAADNKQ--R-----------DPSMDSLKVDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSS 121 (1135)
T ss_pred HHHHHHHHHHHHHhh--h-----------cCCCcEEEEEEEcCCCeEEEEecCccccCCCCCCCCCccceEEEEeecccc
Confidence 378899999999742 1 112247888888878899999999999864211 0 112222222
Q ss_pred hhhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcE--EEEEecCCCce-EEEecCCCCCCCCCc
Q 003713 193 TAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQY--VWEGEANASSY-TIREETNPEKLLPRG 269 (801)
Q Consensus 193 ~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~--~w~s~~~~~~y-~I~~~~~~~~~~~~G 269 (801)
+ | .+. ...-.-|+-|+|.-.+=.++.+++|.+....++..| .|+.......- .|..+. ...+|
T Consensus 122 k--F----dd~----~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~y~q~f~~G~~~~~~p~i~~~~----~~~~G 187 (1135)
T PLN03128 122 N--F----DDN----EKKTTGGRNGYGAKLANIFSTEFTVETADGNRGKKYKQVFTNNMSVKSEPKITSCK----ASENW 187 (1135)
T ss_pred c--c----CCc----cceeeccccCCCCeEEEeecCeEEEEEEECCCCeEEEEEeCCCcccCCCceeccCC----CCCCc
Confidence 2 1 100 122346999999988889999999999742222222 33321000111 122111 13589
Q ss_pred cEEEEEecCCC---ccCCCHHHHHHH---HHHhccCC--CcCeEeeccc
Q 003713 270 TRLTLYLKHDD---KGFAHPERIQKL---VKNYSQFV--SFPIYTWQEK 310 (801)
Q Consensus 270 T~I~L~Lk~d~---~e~~~~~~i~~l---Ik~ys~fl--~~PI~~~~~~ 310 (801)
|+|+..-...- .. ++.+.+..+ +...+.|+ ..-|++++++
T Consensus 188 T~ItF~PD~~iF~~~~-fd~d~~~~l~kRl~elAa~Ln~GlkI~Lnder 235 (1135)
T PLN03128 188 TKITFKPDLAKFNMTR-LDEDVVALMSKRVYDIAGCLGKKLKVELNGKK 235 (1135)
T ss_pred eEEEEEECHHHcCCCc-cChHHHHHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 99987743321 12 244433222 33345566 3566666543
No 48
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.01 E-value=0.022 Score=66.51 Aligned_cols=104 Identities=18% Similarity=0.316 Sum_probs=61.6
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhh
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~~ 201 (801)
.+.+||.||++|+.+.. .....+.|.+..+.+.-.|.|.|||.||+.++..+.|.. +.++
T Consensus 436 vl~nLl~NAi~~~~~~~----------~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~-~~~t--------- 495 (545)
T PRK15053 436 IVGNLLDNAFEASLRSD----------EGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQ-GVST--------- 495 (545)
T ss_pred HHHHHHHHHHHHHhhCC----------CCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCC-CCCC---------
Confidence 58899999999974210 011223344333333356899999999999998764421 1111
Q ss_pred ccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCceEEEecCCCCCCCCCccEEEEEecC
Q 003713 202 DSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLTLYLKH 278 (801)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~y~I~~~~~~~~~~~~GT~I~L~Lk~ 278 (801)
+. .--|..|+|++-+-.+++. . + |.+.+... .+.||++++.|..
T Consensus 496 ------k~-~~~~g~GlGL~ivk~iv~~------~-~-------------G~i~v~s~------~~~Gt~f~i~lP~ 539 (545)
T PRK15053 496 ------RA-DEPGEHGIGLYLIASYVTR------C-G-------------GVITLEDN------DPCGTLFSIFIPK 539 (545)
T ss_pred ------CC-CCCCCceeCHHHHHHHHHH------c-C-------------CEEEEEEC------CCCeEEEEEEECC
Confidence 11 1124569999887766432 1 1 34455432 2578888888754
No 49
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=95.92 E-value=0.024 Score=72.80 Aligned_cols=133 Identities=23% Similarity=0.337 Sum_probs=78.7
Q ss_pred HHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHH--------HHHHHhhcc
Q 003713 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD--------CLGTIAQSG 192 (801)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~--------~l~tIa~Sg 192 (801)
..+.|+|-||+|-.. | ++ .....-.|.|.++++++.|+|.|||-||.-+--.. .|+++-.||
T Consensus 60 ki~dEIldNAvDe~~--r-----~~---~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGg 129 (1388)
T PTZ00108 60 KIFDEILVNAADNKA--R-----DK---GGHRMTYIKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSS 129 (1388)
T ss_pred hhHHHHhhhhhhhhc--c-----cC---CCCCccEEEEEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccc
Confidence 478899999999752 1 00 01233578888888878999999999987642111 122222233
Q ss_pred hhhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcE--EEEEecC-CCceEEEecCCCCCCCCCc
Q 003713 193 TAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQY--VWEGEAN-ASSYTIREETNPEKLLPRG 269 (801)
Q Consensus 193 ~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~--~w~s~~~-~~~y~I~~~~~~~~~~~~G 269 (801)
+ | .+. ...-.-|+-|+|.-.+=.++.+++|.+.....+..| .|+.... ...-.|..+. ...+|
T Consensus 130 k--f----dd~----~yKvSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~~Gm~~~~~p~i~~~~----~~~~G 195 (1388)
T PTZ00108 130 N--Y----DDT----EKRVTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWTDNMSKKSEPRITSYD----GKKDY 195 (1388)
T ss_pred c--C----CCC----ceeeecccccCCccccccccceEEEEEEECCCCCEEEEEecCCCcCCCCCccCCCC----CCCCc
Confidence 2 1 110 122357999999998999999999999884223333 4543211 0011222211 11689
Q ss_pred cEEEEEec
Q 003713 270 TRLTLYLK 277 (801)
Q Consensus 270 T~I~L~Lk 277 (801)
|+|+..-.
T Consensus 196 T~VtF~PD 203 (1388)
T PTZ00108 196 TKVTFYPD 203 (1388)
T ss_pred eEEEEEeC
Confidence 99988743
No 50
>PRK09303 adaptive-response sensory kinase; Validated
Probab=95.79 E-value=0.02 Score=64.34 Aligned_cols=77 Identities=13% Similarity=0.224 Sum_probs=45.5
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCC-CcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHh
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKD-NGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAM 200 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~ 200 (801)
.|..||.||+.+.. ....+.|.+....+ .-.|+|.|||+||+.+++.+.| ...-+
T Consensus 276 vl~NLl~NAik~~~--------------~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF----~pf~~------ 331 (380)
T PRK09303 276 VLLNLLDNAIKYTP--------------EGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIF----EDRVR------ 331 (380)
T ss_pred HHHHHHHHHHhcCC--------------CCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHc----cCcee------
Confidence 57778888877642 12223333332222 3468999999999999987643 11110
Q ss_pred hccccCCCCCcccccccchhhhhhcccC
Q 003713 201 KDSKDAGGDSNLIGQFGVGFYSAFLVSD 228 (801)
Q Consensus 201 ~~~~~~~~~~~~IGqFGIGf~S~F~vad 228 (801)
. ......+..|+|++-|..+++
T Consensus 332 --~----~~~~~~~G~GLGL~i~~~iv~ 353 (380)
T PRK09303 332 --L----PRDEGTEGYGIGLSVCRRIVR 353 (380)
T ss_pred --C----CCCCCCCcccccHHHHHHHHH
Confidence 0 011223569999988776643
No 51
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=95.77 E-value=0.021 Score=64.44 Aligned_cols=32 Identities=16% Similarity=0.366 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHH
Q 003713 154 LDIRIQTDKDNGIITITDSGIGMTQQDLVDCL 185 (801)
Q Consensus 154 ~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l 185 (801)
+.|.+..+.+.-.|+|.|||.||+.+++.+.+
T Consensus 351 i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~ 382 (435)
T PRK09467 351 IKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLF 382 (435)
T ss_pred EEEEEEecCCEEEEEEEecCCCcCHHHHHHhc
Confidence 44554444444579999999999999987643
No 52
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=95.75 E-value=0.018 Score=67.79 Aligned_cols=163 Identities=16% Similarity=0.160 Sum_probs=96.2
Q ss_pred chHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHH--------HHHHHHHHhh
Q 003713 119 KEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQD--------LVDCLGTIAQ 190 (801)
Q Consensus 119 ~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~ee--------l~~~l~tIa~ 190 (801)
....+.|.|.||+|=.- ...--.|.|+++ .++.|+|.|||-||.-+- ++-.|..+-.
T Consensus 37 LhHlv~EVvDNsiDEal--------------aG~~~~I~V~l~-~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHA 101 (635)
T COG0187 37 LHHLVWEVVDNSIDEAL--------------AGYADRIDVTLH-EDGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHA 101 (635)
T ss_pred ceeeEeEeeechHhHHh--------------hCcCcEEEEEEc-CCCeEEEEECCCCCccccCCCCCCCceEEEEEeecc
Confidence 35678999999999642 122346777776 568999999999998765 2222222222
Q ss_pred cchhhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCceEEEecCCCCCCCCCcc
Q 003713 191 SGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGT 270 (801)
Q Consensus 191 Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~y~I~~~~~~~~~~~~GT 270 (801)
+|+-+ .+ .-.-.=|.-|||.--|=.++++++|.+++.+ .-|.-....+...-.+...... ....+||
T Consensus 102 GGKFd------~~----~YkvSGGLHGVG~SVVNALS~~l~v~v~r~g--k~y~q~f~~G~~~~~l~~ig~~-~~~~~GT 168 (635)
T COG0187 102 GGKFD------ND----SYKVSGGLHGVGVSVVNALSTWLEVEVKRDG--KIYRQRFERGVPVTPLEVIGST-DTKKTGT 168 (635)
T ss_pred CcccC------CC----ccEeecCCCccceEEEecccceEEEEEEECC--EEEEEEEeCCCcCCCceecccC-CCCCCcc
Confidence 22211 00 1112348899999888899999999998842 2222222111011112211110 2347899
Q ss_pred EEEEEecCCC---ccCCCHHHHHHHHHHhccCC-CcCeEeeccc
Q 003713 271 RLTLYLKHDD---KGFAHPERIQKLVKNYSQFV-SFPIYTWQEK 310 (801)
Q Consensus 271 ~I~L~Lk~d~---~e~~~~~~i~~lIk~ys~fl-~~PI~~~~~~ 310 (801)
+|+.+-.++- .+ .+...|++-++.++=.. ..-|.+.++.
T Consensus 169 ~V~F~PD~~iF~~~~-f~~~~l~~RlrelA~L~~gl~I~l~d~r 211 (635)
T COG0187 169 KVRFKPDPEIFGETE-FDYEILKRRLRELAFLNKGVKITLTDER 211 (635)
T ss_pred EEEEEcChHhcCCcc-cCHHHHHHHHHHHhccCCCCEEEEEecc
Confidence 9988744321 23 37788888888776555 3778886543
No 53
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=95.51 E-value=0.04 Score=58.80 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=33.3
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCL 185 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l 185 (801)
.+.+||.||+++.. ....+.|.+..+.+.-.|+|.|||.||+.+.+...+
T Consensus 233 vl~nll~Nai~~~~--------------~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if 282 (333)
T TIGR02966 233 AFSNLVSNAIKYTP--------------EGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLT 282 (333)
T ss_pred HHHHHHHHhheeCC--------------CCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhc
Confidence 67788888876641 122234444444344579999999999999987643
No 54
>PRK10337 sensor protein QseC; Provisional
Probab=95.40 E-value=0.038 Score=62.69 Aligned_cols=72 Identities=18% Similarity=0.246 Sum_probs=44.2
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhh
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~~ 201 (801)
.++.||.||+.+.. .. ..|.|.... ..|+|.|||.||+.+++...+-. |.+
T Consensus 356 vl~Nli~NA~k~~~--------------~~--~~i~i~~~~--~~i~i~D~G~Gi~~~~~~~if~~--------f~~--- 406 (449)
T PRK10337 356 LVRNLLDNAIRYSP--------------QG--SVVDVTLNA--RNFTVRDNGPGVTPEALARIGER--------FYR--- 406 (449)
T ss_pred HHHHHHHHHHhhCC--------------CC--CeEEEEEEe--eEEEEEECCCCCCHHHHHHhccc--------ccC---
Confidence 57788888777741 11 235554432 37999999999999998874421 110
Q ss_pred ccccCCCCCcccccccchhhhhhcccC
Q 003713 202 DSKDAGGDSNLIGQFGVGFYSAFLVSD 228 (801)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~vad 228 (801)
.+..-.+..|+|+.-|-.+++
T Consensus 407 ------~~~~~~~g~GlGL~iv~~i~~ 427 (449)
T PRK10337 407 ------PPGQEATGSGLGLSIVRRIAK 427 (449)
T ss_pred ------CCCCCCCccchHHHHHHHHHH
Confidence 011123568999877655543
No 55
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.20 E-value=0.072 Score=65.41 Aligned_cols=77 Identities=26% Similarity=0.338 Sum_probs=48.3
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEc-CCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHh
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTD-KDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAM 200 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~ 200 (801)
.+..||.||.++.. ...+.|.+..+ .+.-.|+|.|||+||+.+++.+.|-..-+.
T Consensus 402 vl~NLl~NAik~~~---------------~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~--------- 457 (779)
T PRK11091 402 ILWNLISNAVKFTQ---------------QGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQV--------- 457 (779)
T ss_pred HHHHHHHHHHHhCC---------------CCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcc---------
Confidence 67789999988741 23355666555 233578999999999999987754322111
Q ss_pred hccccCCCCCcccccccchhhhhhcc
Q 003713 201 KDSKDAGGDSNLIGQFGVGFYSAFLV 226 (801)
Q Consensus 201 ~~~~~~~~~~~~IGqFGIGf~S~F~v 226 (801)
++. ......|.-|+|++-|-.+
T Consensus 458 ~~~----~~~~~~~GtGLGL~i~~~i 479 (779)
T PRK11091 458 KDS----HGGKPATGTGIGLAVSKRL 479 (779)
T ss_pred cCC----CCCCCCCCcchHHHHHHHH
Confidence 000 1223356789998766544
No 56
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=95.06 E-value=0.16 Score=63.97 Aligned_cols=86 Identities=20% Similarity=0.324 Sum_probs=52.6
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhh
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~~ 201 (801)
.|.-||+||+.+.. ...+.|.+..+.+.-.|+|.|||+||+.+++.+.|-..-+.+
T Consensus 566 vl~NLl~NAik~t~---------------~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~--------- 621 (924)
T PRK10841 566 VISNLLSNAIKFTD---------------TGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVG--------- 621 (924)
T ss_pred HHHHHHHHHHhhCC---------------CCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCC---------
Confidence 67788889887741 223455555544445789999999999999887442111100
Q ss_pred ccccCCCCCcccccccchhhhhhccc----CeEEEEEec
Q 003713 202 DSKDAGGDSNLIGQFGVGFYSAFLVS----DRVVVETKS 236 (801)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~va----dkv~V~Sk~ 236 (801)
. ......+..|+|++-|-.++ -++.|.|..
T Consensus 622 ~-----~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~ 655 (924)
T PRK10841 622 T-----GVQRNFQGTGLGLAICEKLINMMDGDISVDSEP 655 (924)
T ss_pred C-----CCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcC
Confidence 0 11122356799998765443 457777654
No 57
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=94.83 E-value=0.059 Score=65.84 Aligned_cols=79 Identities=16% Similarity=0.324 Sum_probs=48.3
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhh
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~~ 201 (801)
.+..||.||.+++. ....+.|.+..+.+.-.|+|.|||.||+.+++.+.|-.. .+++.
T Consensus 601 il~NLI~NAik~s~--------------~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F-~t~~~------- 658 (703)
T TIGR03785 601 MLDKLVDNAREFSP--------------EDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSM-VSVRD------- 658 (703)
T ss_pred HHHHHHHHHHHHCC--------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCC-eecCC-------
Confidence 56788888888752 123345555554444579999999999999987743211 11110
Q ss_pred ccccCCCCCcccccccchhhhhhcccC
Q 003713 202 DSKDAGGDSNLIGQFGVGFYSAFLVSD 228 (801)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~F~vad 228 (801)
....--+..|+|++-|-.+++
T Consensus 659 ------~~~~~~~g~GLGL~Ivr~Iv~ 679 (703)
T TIGR03785 659 ------QGAQDQPHLGLGLYIVRLIAD 679 (703)
T ss_pred ------CCCCCCCCccHHHHHHHHHHH
Confidence 111122468999988766644
No 58
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=94.72 E-value=0.14 Score=63.51 Aligned_cols=81 Identities=23% Similarity=0.407 Sum_probs=51.0
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEc---------------CCCcEEEEEeCCCCCCHHHHHHHHH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTD---------------KDNGIITITDSGIGMTQQDLVDCLG 186 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d---------------~~~~~l~I~DNGiGMt~eel~~~l~ 186 (801)
.+..||.||+.++. ....+.|.+..+ .+.-.|.|.|||+||+.+++.+.|
T Consensus 564 vl~NLl~NAik~~~--------------~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iF- 628 (828)
T PRK13837 564 VLMNLCSNAAQAMD--------------GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIF- 628 (828)
T ss_pred HHHHHHHHHHHHcc--------------cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhh-
Confidence 57788888888863 123345555443 122368999999999999987633
Q ss_pred HHhhcchhhHHHHhhccccCCCCCcccccccchhhhhhcc----cCeEEEEEec
Q 003713 187 TIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLV----SDRVVVETKS 236 (801)
Q Consensus 187 tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~v----adkv~V~Sk~ 236 (801)
.. |. . .. . |..|+|++-|-.+ +-++.|.|..
T Consensus 629 ---e~----F~---~------~~-~--~G~GLGL~i~~~iv~~~gG~i~v~s~~ 663 (828)
T PRK13837 629 ---EP----FF---T------TR-A--GGTGLGLATVHGIVSAHAGYIDVQSTV 663 (828)
T ss_pred ---CC----cc---c------CC-C--CCCcchHHHHHHHHHHCCCEEEEEecC
Confidence 11 10 0 11 1 6789999876544 3557777754
No 59
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=94.47 E-value=0.11 Score=60.35 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=33.4
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCC-cEEEEEeCCCCCCHHHHHHH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDN-GIITITDSGIGMTQQDLVDC 184 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DNGiGMt~eel~~~ 184 (801)
.+.+||.||+.+.. ....+.|.+..+.+. -.|.|+|||+||+.+++...
T Consensus 504 ~~~nli~na~~~~~--------------~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~ 553 (607)
T PRK11360 504 VLLNILINAVQAIS--------------ARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKI 553 (607)
T ss_pred HHHHHHHHHHHHhc--------------CCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhh
Confidence 56778888877652 122344544444444 67999999999999988763
No 60
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=94.47 E-value=0.089 Score=65.35 Aligned_cols=86 Identities=17% Similarity=0.314 Sum_probs=50.9
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcC--CC---cEEEEEeCCCCCCHHHHHHHHHHHhhcchhhH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDK--DN---GIITITDSGIGMTQQDLVDCLGTIAQSGTAKF 196 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~---~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f 196 (801)
.|..||+||+.+.. ...+.|.+.... +. -.|+|.|||+||+.+++.+.|-..-+..
T Consensus 412 vl~NLl~NAik~~~---------------~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~---- 472 (919)
T PRK11107 412 IITNLVGNAIKFTE---------------SGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQAD---- 472 (919)
T ss_pred HHHHHHHHHhhcCC---------------CCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCC----
Confidence 57789999887742 223445554322 21 3589999999999999876442211100
Q ss_pred HHHhhccccCCCCCcccccccchhhhhhccc----CeEEEEEec
Q 003713 197 LKAMKDSKDAGGDSNLIGQFGVGFYSAFLVS----DRVVVETKS 236 (801)
Q Consensus 197 ~~~~~~~~~~~~~~~~IGqFGIGf~S~F~va----dkv~V~Sk~ 236 (801)
. ......|..|+|++-|-.++ -++.|.|..
T Consensus 473 ------~----~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~ 506 (919)
T PRK11107 473 ------A----SISRRHGGTGLGLVITQKLVNEMGGDISFHSQP 506 (919)
T ss_pred ------C----CCCCCCCCcchhHHHHHHHHHHhCCEEEEEecC
Confidence 0 11223477899998665544 446666544
No 61
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=94.43 E-value=0.038 Score=54.96 Aligned_cols=88 Identities=20% Similarity=0.266 Sum_probs=52.8
Q ss_pred hHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHH
Q 003713 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKA 199 (801)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~ 199 (801)
..++.|++.||+....+. .....+.|.+....+.-.|.|.|+|.||+.+.+...+. .....
T Consensus 44 ~lav~Ea~~Nai~Hg~~~-----------~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~---p~~~~----- 104 (161)
T PRK04069 44 KIAVSEACTNAVQHAYKE-----------DEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLG---PYDIS----- 104 (161)
T ss_pred HHHHHHHHHHHHHhccCC-----------CCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccC---CCCCC-----
Confidence 358999999999987310 01233556656565556899999999999776543220 00000
Q ss_pred hhccccCCCCCcccccccchhhhhhcccCeEEEEE
Q 003713 200 MKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVET 234 (801)
Q Consensus 200 ~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~S 234 (801)
.....-..-|+|++-+=.++|++.+.+
T Consensus 105 --------~~~~~~~~~G~GL~li~~l~d~v~~~~ 131 (161)
T PRK04069 105 --------KPIEDLREGGLGLFLIETLMDDVTVYK 131 (161)
T ss_pred --------CcccccCCCceeHHHHHHHHHhEEEEc
Confidence 000111123777776667788887764
No 62
>PRK10490 sensor protein KdpD; Provisional
Probab=94.40 E-value=0.071 Score=66.92 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=34.6
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCL 185 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l 185 (801)
.+..||+||+.+.. ....+.|.+..+.+.-.|.|.|||.||+.+++.+.|
T Consensus 782 VL~NLL~NAik~s~--------------~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IF 831 (895)
T PRK10490 782 VLINLLENAVKYAG--------------AQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIF 831 (895)
T ss_pred HHHHHHHHHHHhCC--------------CCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhc
Confidence 57788888877741 223345555544444578999999999999987643
No 63
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=94.30 E-value=0.058 Score=63.27 Aligned_cols=63 Identities=30% Similarity=0.439 Sum_probs=44.1
Q ss_pred cchhhHHHHHHHHHhcCCCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCH
Q 003713 99 EYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQ 178 (801)
Q Consensus 99 ~Fq~e~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~ 178 (801)
...++--+|-.+|+| |||||.||+.- ...+.+.|+...+.+.-.|+|.|||.|+..
T Consensus 490 ~V~~~~iRLeQVLvN------------Ll~NALDA~~~------------~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~ 545 (603)
T COG4191 490 WVMANEIRLEQVLVN------------LLQNALDAMAG------------QEDRRLSIRAQREGGQVVLTVRDNGPGIAP 545 (603)
T ss_pred eeecchhhHHHHHHH------------HHHHHHHHhcC------------CCCCeeEEEEEecCCeEEEEEccCCCCCCH
Confidence 344454567777777 99999999851 022334455555555668999999999999
Q ss_pred HHHHHHH
Q 003713 179 QDLVDCL 185 (801)
Q Consensus 179 eel~~~l 185 (801)
+-+...|
T Consensus 546 e~~~~lF 552 (603)
T COG4191 546 EALPHLF 552 (603)
T ss_pred HHHHhhc
Confidence 9887654
No 64
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=94.30 E-value=0.054 Score=56.77 Aligned_cols=48 Identities=25% Similarity=0.437 Sum_probs=34.8
Q ss_pred HHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHH
Q 003713 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD 183 (801)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~ 183 (801)
..+..||.||.+|+. .+.+.|.+....+.-.|.|.|||.||+.+++..
T Consensus 231 ~vl~nLi~NAi~~~~---------------~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~ 278 (336)
T COG0642 231 QVLVNLLSNAIKYTP---------------GGEITISVRQDDEQVTISVEDTGPGIPEEELER 278 (336)
T ss_pred HHHHHHHHHHhccCC---------------CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHH
Confidence 378899999999972 123444444333336899999999999999655
No 65
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=94.27 E-value=0.14 Score=48.78 Aligned_cols=46 Identities=26% Similarity=0.273 Sum_probs=29.6
Q ss_pred HHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCC
Q 003713 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMT 177 (801)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt 177 (801)
.++.||++||..+. +. . .....+.|.+....+.-.|.|.|+|.||+
T Consensus 42 ~~l~eli~Nai~h~----~~---~----~~~~~I~v~~~~~~~~~~i~I~D~G~gi~ 87 (137)
T TIGR01925 42 TAVSEAVTNAIIHG----YE---E----NCEGVVYISATIEDHEVYITVRDEGIGIE 87 (137)
T ss_pred HHHHHHHHHHHHhc----cC---C----CCCcEEEEEEEEeCCEEEEEEEEcCCCcC
Confidence 47899999988542 11 0 01223455555544455789999999997
No 66
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=94.15 E-value=0.049 Score=65.19 Aligned_cols=156 Identities=17% Similarity=0.166 Sum_probs=84.7
Q ss_pred HHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHH--H---------HHHHh
Q 003713 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD--C---------LGTIA 189 (801)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~--~---------l~tIa 189 (801)
..+.|+|.||+|-... ++. ..--.|.|.++ ++.|+|.|||-||+-+--.. . |+++
T Consensus 48 hi~~EIldNavDe~~~-------~~~----g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~L- 113 (602)
T PHA02569 48 KIIDEIIDNSVDEAIR-------TNF----KFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRT- 113 (602)
T ss_pred eeeehhhhhhhhhhhc-------cCC----CCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEEee-
Confidence 3667999999996421 110 12346777777 67999999999998643211 0 1112
Q ss_pred hcchhhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCC-cEEEEEecCCCceEEEecCCCCCCCCC
Q 003713 190 QSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDK-QYVWEGEANASSYTIREETNPEKLLPR 268 (801)
Q Consensus 190 ~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~-~~~w~s~~~~~~y~I~~~~~~~~~~~~ 268 (801)
.+|.+ | . + .-.-.-|.-|+|.-.+=.++.+++|.++. +... ...|+. |. .+.+...+ ....+
T Consensus 114 haGgk-F-d----~----~ykvSGGlhGVG~svvNaLS~~~~V~v~~-~~~~~~q~f~~----G~-~~~~~~~~-~~~~~ 176 (602)
T PHA02569 114 KAGSN-F-D----D----TNRVTGGMNGVGSSLTNFFSVLFIGETCD-GKNEVTVNCSN----GA-ENISWSTK-PGKGK 176 (602)
T ss_pred ccccc-c-C----C----cceeeCCcCCccceeeeccchhhheEEEc-CCEEEEEEecC----Cc-ccCCcccC-CCCCC
Confidence 22221 2 0 0 11124699999998888899999998855 2211 223321 21 11111111 23468
Q ss_pred ccEEEEEecCCC---ccCC--CHHHHHHHHHHhccCC--CcCeEeec
Q 003713 269 GTRLTLYLKHDD---KGFA--HPERIQKLVKNYSQFV--SFPIYTWQ 308 (801)
Q Consensus 269 GT~I~L~Lk~d~---~e~~--~~~~i~~lIk~ys~fl--~~PI~~~~ 308 (801)
||+|+..-..+- ..|- ....|.+-++..+ |+ ..-|++++
T Consensus 177 GT~V~F~PD~~iF~~~~~~~~~~~~l~~Rl~elA-~Ln~Gl~I~l~d 222 (602)
T PHA02569 177 GTSVTFIPDFSHFEVNGLDQQYLDIILDRLQTLA-VVFPDIKFTFNG 222 (602)
T ss_pred ccEEEEEECHHHhCCCccCccHHHHHHHHHHHHh-cCCCCCEEEEEe
Confidence 999988754421 1121 1344555555443 44 35666654
No 67
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=94.13 E-value=0.13 Score=66.32 Aligned_cols=99 Identities=19% Similarity=0.242 Sum_probs=58.8
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEE---cCCC--cEEEEEeCCCCCCHHHHHHHHHHHhhcchhhH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQT---DKDN--GIITITDSGIGMTQQDLVDCLGTIAQSGTAKF 196 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~---d~~~--~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f 196 (801)
.+..||.||+++.. ...+.|.+.. +.+. -.|+|.|||+||+.+++.+.|-... .+
T Consensus 832 vl~NLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~-~~---- 891 (1197)
T PRK09959 832 VLSNLLSNALKFTT---------------EGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYS-QT---- 891 (1197)
T ss_pred HHHHHHHHHHHhCC---------------CCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhcccc-cc----
Confidence 67899999999862 1223444332 2222 2479999999999999876432110 00
Q ss_pred HHHhhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCceEEEecCCCCCCCCCccEEEEEe
Q 003713 197 LKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLTLYL 276 (801)
Q Consensus 197 ~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~y~I~~~~~~~~~~~~GT~I~L~L 276 (801)
......+..|+|++-|-.+++. + + |.+.+... ...||++++.|
T Consensus 892 -----------~~~~~~~G~GLGL~i~~~iv~~------~-g-------------G~i~v~s~------~~~Gt~f~i~l 934 (1197)
T PRK09959 892 -----------SAGRQQTGSGLGLMICKELIKN------M-Q-------------GDLSLESH------PGIGTTFTITI 934 (1197)
T ss_pred -----------ccCCCCCCcCchHHHHHHHHHH------c-C-------------CEEEEEeC------CCCcEEEEEEE
Confidence 0111235689999877665421 2 1 45555432 25799999887
Q ss_pred c
Q 003713 277 K 277 (801)
Q Consensus 277 k 277 (801)
-
T Consensus 935 P 935 (1197)
T PRK09959 935 P 935 (1197)
T ss_pred E
Confidence 4
No 68
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=93.98 E-value=0.091 Score=61.22 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=46.2
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhh
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMK 201 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~~ 201 (801)
.|.=||.||.||..+ . .....+.+.+..+.+.-.|.|.|||+||+++.... +-..|.|.+
T Consensus 431 IlGNLidNA~eA~~~------~-----~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~-iFe~G~Stk-------- 490 (537)
T COG3290 431 ILGNLIDNALEALLA------P-----EENKEIELSLSDRGDELVIEVADTGPGIPPEVRDK-IFEKGVSTK-------- 490 (537)
T ss_pred HHHHHHHHHHHHhhc------c-----CCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHH-HHhcCcccc--------
Confidence 566699999999852 0 11233344444333334679999999999998875 333444422
Q ss_pred ccccCCCCCcccccccchhhhh
Q 003713 202 DSKDAGGDSNLIGQFGVGFYSA 223 (801)
Q Consensus 202 ~~~~~~~~~~~IGqFGIGf~S~ 223 (801)
-.|.-|+|+|=+
T Consensus 491 ----------~~~~rGiGL~Lv 502 (537)
T COG3290 491 ----------NTGGRGIGLYLV 502 (537)
T ss_pred ----------CCCCCchhHHHH
Confidence 147889998754
No 69
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=93.81 E-value=0.16 Score=63.68 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=32.9
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCC---CcEEEEEeCCCCCCHHHHHHHH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKD---NGIITITDSGIGMTQQDLVDCL 185 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~---~~~l~I~DNGiGMt~eel~~~l 185 (801)
.|.-||+||..+.. ...+.|.+..... .-.|+|.|||+||+.+++.+-|
T Consensus 569 VL~NLL~NAik~t~---------------~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IF 620 (894)
T PRK10618 569 ILLLLLNYAITTTA---------------YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLH 620 (894)
T ss_pred HHHHHHHHHHHhCC---------------CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhc
Confidence 56779999887741 1234444443222 2368999999999999988743
No 70
>PRK03660 anti-sigma F factor; Provisional
Probab=93.80 E-value=0.26 Score=47.39 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=30.5
Q ss_pred hHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCH
Q 003713 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQ 178 (801)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~ 178 (801)
...+.|++.||+... +.. .....+.|.+....+.-.|+|.|+|.||+.
T Consensus 41 ~~~l~eli~Nai~h~----~~~-------~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 41 KTAVSEAVTNAIIHG----YEN-------NPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HHHHHHHHHHHHHHh----cCC-------CCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 347899999988553 110 011234555555444457899999999975
No 71
>PRK09835 sensor kinase CusS; Provisional
Probab=93.76 E-value=0.099 Score=59.68 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=32.9
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDC 184 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~ 184 (801)
.++.||.||+.+.. ....+.|.+..+.+.-.|+|.|||.||+.+++...
T Consensus 379 vl~nll~Na~~~~~--------------~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~i 427 (482)
T PRK09835 379 AISNLLSNALRYTP--------------AGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRL 427 (482)
T ss_pred HHHHHHHHHHhcCC--------------CCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHH
Confidence 56666677666531 12234555555544557999999999999998763
No 72
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=93.76 E-value=0.067 Score=65.81 Aligned_cols=167 Identities=19% Similarity=0.213 Sum_probs=90.7
Q ss_pred hHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH-------HHHHHHhhcc
Q 003713 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLV-------DCLGTIAQSG 192 (801)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~-------~~l~tIa~Sg 192 (801)
...+.|+|.||+|=... ..--.|.|.+++ ++.|+|+|||-||.-+.-. +.+.|+-.+|
T Consensus 131 hhLv~EIlDNSVDE~la--------------G~~~~I~V~i~~-DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAG 195 (903)
T PTZ00109 131 HQLLFEILDNSVDEYLA--------------GECNKITVVLHK-DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSG 195 (903)
T ss_pred eEEEEEEeeccchhhcc--------------CCCcEEEEEEcC-CCeEEEEeCCccccccccccCCCcceeEEEEEeccC
Confidence 34788999999995320 122367777765 4699999999999874322 1112222333
Q ss_pred hhhHHHHh----hc---------------------cc-----cC-CCC-CcccccccchhhhhhcccCeEEEEEecCCCC
Q 003713 193 TAKFLKAM----KD---------------------SK-----DA-GGD-SNLIGQFGVGFYSAFLVSDRVVVETKSPKSD 240 (801)
Q Consensus 193 ~~~f~~~~----~~---------------------~~-----~~-~~~-~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~ 240 (801)
.+ |-... .. +. +. ... .-.-|.-|||.-.+=.++.+++|.++..+
T Consensus 196 GK-F~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdG-- 272 (903)
T PTZ00109 196 GK-FQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGG-- 272 (903)
T ss_pred cc-ccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECC--
Confidence 22 21100 00 00 00 001 12478999999888899999999998832
Q ss_pred CcEEEEEecC--CCceEEEecCCCCCCCCCccEEEEEec-CCCc-c-C--------------CCHHHHHHHHHHhccCC-
Q 003713 241 KQYVWEGEAN--ASSYTIREETNPEKLLPRGTRLTLYLK-HDDK-G-F--------------AHPERIQKLVKNYSQFV- 300 (801)
Q Consensus 241 ~~~~w~s~~~--~~~y~I~~~~~~~~~~~~GT~I~L~Lk-~d~~-e-~--------------~~~~~i~~lIk~ys~fl- 300 (801)
..|.-+...+ .....+..++ ...+||+|+..-. +.-- . . ++.+.|++-++.++-..
T Consensus 273 K~y~q~F~rG~~v~pLkvig~~----~~~tGT~VtF~PD~~~IF~~~~~~~~~~~~~~~~~~F~~d~L~~RLrElAfLNp 348 (903)
T PTZ00109 273 KIYSIELSKGKVTKPLSVFSCP----LKKRGTTIHFLPDYKHIFKTHHQHTETEEEEGCKNGFNLDLIKNRIHELSYLNP 348 (903)
T ss_pred EEEEEEeCCCcccCCccccCCc----CCCCceEEEEEeCcchhcCccccccccccccccccccCHHHHHHHHHHHhccCC
Confidence 2222222111 0111111111 1358999887755 4311 1 1 25567777777776333
Q ss_pred CcCeEeec
Q 003713 301 SFPIYTWQ 308 (801)
Q Consensus 301 ~~PI~~~~ 308 (801)
..-|++++
T Consensus 349 GL~I~L~D 356 (903)
T PTZ00109 349 GLTFYLVD 356 (903)
T ss_pred CcEEEEEe
Confidence 46666664
No 73
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=93.50 E-value=0.13 Score=48.15 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=54.3
Q ss_pred hHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHH
Q 003713 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKA 199 (801)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~ 199 (801)
..++.|++.||+.+...- .....+.|++..+.+.-.|.|.|+|.|++...+.... .
T Consensus 33 ~lav~E~~~Nav~H~~~~-----------~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~-------~------ 88 (125)
T PF13581_consen 33 ELAVSEALTNAVEHGYPG-----------DPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPD-------P------ 88 (125)
T ss_pred HHHHHHHHHHHHHHcCCC-----------CCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCcc-------c------
Confidence 458999999999997310 0123455666677777789999999999887654310 0
Q ss_pred hhccccCCCCCcccccccchhhhhhcccCeEEE
Q 003713 200 MKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVV 232 (801)
Q Consensus 200 ~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V 232 (801)
........-|.|++=+=.++|++.+
T Consensus 89 --------~~~~~~~~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 89 --------WEPDSLREGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred --------ccCCCCCCCCcCHHHHHHHHcEEEE
Confidence 0113345556777777778899988
No 74
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=93.10 E-value=0.14 Score=51.01 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=54.3
Q ss_pred hHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHH
Q 003713 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKA 199 (801)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~ 199 (801)
..++.|++.||+.+.-. . .....+.|.+..+.+.-.|.|.|+|.||+...+..-+. .....
T Consensus 44 ~lav~Ea~~Nai~ha~~-------~----~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~---~~~~~----- 104 (159)
T TIGR01924 44 KIAVSEACTNAVKHAYK-------E----GENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLG---PYDGS----- 104 (159)
T ss_pred HHHHHHHHHHHHHhccC-------C----CCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccC---CCCCC-----
Confidence 34899999999988621 0 11234556666555556788999999998776553110 00000
Q ss_pred hhccccCCCCCcccccccchhhhhhcccCeEEEEE
Q 003713 200 MKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVET 234 (801)
Q Consensus 200 ~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~S 234 (801)
........-|.|++-+=.++|.+.+.+
T Consensus 105 --------~~~~~~~~~G~GL~Li~~L~D~v~~~~ 131 (159)
T TIGR01924 105 --------EPIDDLREGGLGLFLIETLMDEVEVYE 131 (159)
T ss_pred --------CCcccCCCCccCHHHHHHhccEEEEEe
Confidence 011111234888888888899998875
No 75
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=92.41 E-value=0.32 Score=57.47 Aligned_cols=69 Identities=22% Similarity=0.347 Sum_probs=47.1
Q ss_pred ccccchhhHHHHHHHHHhcCCCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCc--EEEEEeCC
Q 003713 96 EKYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNG--IITITDSG 173 (801)
Q Consensus 96 e~~~Fq~e~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~--~l~I~DNG 173 (801)
+.+.+..|.+.|-..+. -||+||.+|++.+.... .....|+++.|..+. .+.|+|||
T Consensus 590 epl~~~~D~~~l~Qvf~------------NliKNA~EAi~~~~~~e---------~~~~~i~~~~~~~~g~i~v~V~DNG 648 (712)
T COG5000 590 EPLIGMADATLLGQVFG------------NLLKNAAEAIEAVEAEE---------RRTALIRVSLDDADGRIVVDVIDNG 648 (712)
T ss_pred CceeeecCHHHHHHHHH------------HHHHhHHHHhhhccccc---------CCcceEEEEEecCCCeEEEEEecCC
Confidence 45556666554444444 48999999998764321 111268888876554 57999999
Q ss_pred CCCCHHHHHHHH
Q 003713 174 IGMTQQDLVDCL 185 (801)
Q Consensus 174 iGMt~eel~~~l 185 (801)
.|++.+.+.+.+
T Consensus 649 kG~p~e~r~r~~ 660 (712)
T COG5000 649 KGFPRENRHRAL 660 (712)
T ss_pred CCCChHHhhhhc
Confidence 999999988743
No 76
>PRK10547 chemotaxis protein CheA; Provisional
Probab=92.30 E-value=1 Score=54.90 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=34.1
Q ss_pred HHHHHHcHHhHHH----HHHhhccCCcccccCCCCceEEEEEc--CCCcEEEEEeCCCCCCHHHHHH
Q 003713 123 LRELISNASDALD----KLRYLGVTEPELLKDAVDLDIRIQTD--KDNGIITITDSGIGMTQQDLVD 183 (801)
Q Consensus 123 lRELIqNA~DA~~----k~r~~~~~~~~~~~~~~~~~I~I~~d--~~~~~l~I~DNGiGMt~eel~~ 183 (801)
|..||.||+|+.- .|+... ......|.|... .+.-.|+|.|+|.||+.+.+.+
T Consensus 390 L~hLirNAidHgie~p~~R~~~g--------kp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~ 448 (670)
T PRK10547 390 LTHLVRNSLDHGIELPEKRLAAG--------KNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILA 448 (670)
T ss_pred HHHHHHHHHHhhccchhhHHhcC--------CCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 6689999999962 222111 112234555543 3334689999999999988764
No 77
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=91.16 E-value=0.0042 Score=72.26 Aligned_cols=226 Identities=7% Similarity=-0.110 Sum_probs=149.6
Q ss_pred ChHHHHHHHHHHhHHhhhcccCCccChhhccCccceeeccCCCccccHHHHHhhcCCCCccEEEEecCCHHHHhcChhHH
Q 003713 497 NRADYEKFWENFGKYLKMGCIDDRENHKPLAPLLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAADSVASARNTPFLE 576 (801)
Q Consensus 497 d~e~Y~~f~~~f~~~lK~G~~eD~~~~e~l~~lLrF~Ts~~~~~~~SL~eYv~rm~e~Qk~IYYit~ds~~~~~~sp~lE 576 (801)
+...+.++|+.|...+..++-+.--....--... +...-.-...-|.+++ .+.+++...++....+.-.+.+.....
T Consensus 375 e~a~d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~-~a~lLry~ss~s~~~~--~Sl~dYv~rm~~~qk~iyyi~~~s~~~ 451 (656)
T KOG0019|consen 375 DLAKDAEKYKKFFKNYGLFLKEGIVTASEQQVKE-IAKLLRYESSKSGEGA--TSLDDYVERMREGQKNIYYITAPNRQL 451 (656)
T ss_pred HHhhhHHHHHHHHHHHhhhhhhcccchhhhhhhH-HHHHhhhhcccccccc--ccHHHHHHhhcccccceEEeccchhhh
Confidence 4457888999998888887766644433333332 2111112234667777 556777888888887766677777777
Q ss_pred HHhhCCceEEEecCCccHHHHHHhhhccCCceEeccccccCcCCCchHHH---HhhhHHHHHHHHHHHHHhCCceeEEEe
Q 003713 577 KLLEKDLEVLYLVDPIDEIAVQNLKSYKEKNFVDISKEDLDLGEKNEEKE---KVMKEEFGQTCDWIKKRLGDKVASVQI 653 (801)
Q Consensus 577 ~~k~kg~EVL~l~dpiDE~~lq~L~e~~gkkf~~V~k~~l~L~~~~ee~~---~~~~~e~~~L~~~lk~~LgdkV~~V~v 653 (801)
.-.+-++|++..-++.+.||.+.+.+|....++......+-....+..+. ++.+.+.+....-++ .|-+. +
T Consensus 452 ~~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee~k~efe-~lck~-----m 525 (656)
T KOG0019|consen 452 AESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEESKKEFE-ELCKW-----M 525 (656)
T ss_pred hhcchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHHHHHHHH-HHHHH-----H
Confidence 88888999999999999999999999999988888876653222211111 122222222222222 22222 4
Q ss_pred cccCCCCCeEEEecCCCccHHHHHHHHHhccCCCCcccccCCCceEEECCCChHHHHHHhhhcCCCCchHHHHHHHHHHH
Q 003713 654 SNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYD 733 (801)
Q Consensus 654 S~rL~dsPa~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~k~iLEINp~HPLIk~L~~l~~~d~~d~~~~~~a~lLyd 733 (801)
+.+|.+ +|+-|+..+.++.++..|+..+-....++...|.++...+.|+-|-++- .+..+.+|+.+.++.+-.+.+.
T Consensus 526 K~iL~~-kVekV~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~--kk~lEINP~hpivk~L~~~~~~ 602 (656)
T KOG0019|consen 526 KEILGS-KVEKVTVNNRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKA--KKHLEINPDHPLVKTLRQLRES 602 (656)
T ss_pred HHHhcC-ceEEEEecCcccCCceEEEecccccchhHHHHHhhhhccccChhhhccc--cceeeeCCCChHHHHHHHHHhc
Confidence 578887 8888888888998888888765333444445666788999999998876 3344567888888888766654
Q ss_pred H
Q 003713 734 A 734 (801)
Q Consensus 734 ~ 734 (801)
.
T Consensus 603 d 603 (656)
T KOG0019|consen 603 D 603 (656)
T ss_pred C
Confidence 3
No 78
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=89.71 E-value=0.64 Score=56.88 Aligned_cols=125 Identities=19% Similarity=0.281 Sum_probs=74.7
Q ss_pred HHHHHHHcHHhHHH----HHHhhccCCcccccCCCCceEEEEEcCCC--cEEEEEeCCCCCCHHHHHHHHHHHhhcchhh
Q 003713 122 FLRELISNASDALD----KLRYLGVTEPELLKDAVDLDIRIQTDKDN--GIITITDSGIGMTQQDLVDCLGTIAQSGTAK 195 (801)
Q Consensus 122 flRELIqNA~DA~~----k~r~~~~~~~~~~~~~~~~~I~I~~d~~~--~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~ 195 (801)
.|.=||=||+|.+- .|+.. +..+...|.+..-..+ -.|.|+|+|-|++++-|.+.- |-+ |-
T Consensus 436 PL~HLvRNAvDHGIE~pE~R~a~--------GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KA--iEr-Gl-- 502 (716)
T COG0643 436 PLTHLVRNAVDHGIETPEERRAA--------GKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKA--IER-GL-- 502 (716)
T ss_pred cHHHHHhcchhccCCCHHHHHHc--------CCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHH--HHc-CC--
Confidence 67778999999972 33332 3456678888764433 357999999999999987632 111 10
Q ss_pred HHHHhhccccCCCCCccccc---ccchhhhhhcccCeEEEEEecCCCCCcEE---EEEecCCCceEEEecCCCCCCCCCc
Q 003713 196 FLKAMKDSKDAGGDSNLIGQ---FGVGFYSAFLVSDRVVVETKSPKSDKQYV---WEGEANASSYTIREETNPEKLLPRG 269 (801)
Q Consensus 196 f~~~~~~~~~~~~~~~~IGq---FGIGf~S~F~vadkv~V~Sk~~~~~~~~~---w~s~~~~~~y~I~~~~~~~~~~~~G 269 (801)
+.. .....+.. +.+=|...|.-+++|+=.|.+ |-+.-++ .+. -+ |..+|... .+.|
T Consensus 503 -i~~--------~~a~~lSd~Ei~~LIF~PGFSTa~~VtdvSGR-GVGMDVVk~~I~~-Lg-G~I~V~S~------~G~G 564 (716)
T COG0643 503 -ITE--------EEAETLSDEEILNLIFAPGFSTAEQVTDVSGR-GVGMDVVKTNIEQ-LG-GSISVSSE------PGKG 564 (716)
T ss_pred -CCh--------HHhccCCHHHHHHHHhcCCCCcchhhhcccCC-ccCHHHHHHHHHH-cC-CEEEEEec------CCCC
Confidence 000 00000111 223377889999998877766 3322110 011 12 57777643 4799
Q ss_pred cEEEEEec
Q 003713 270 TRLTLYLK 277 (801)
Q Consensus 270 T~I~L~Lk 277 (801)
|+++|+|=
T Consensus 565 T~Fti~LP 572 (716)
T COG0643 565 TTFTIRLP 572 (716)
T ss_pred eEEEEecC
Confidence 99999975
No 79
>PRK13557 histidine kinase; Provisional
Probab=89.44 E-value=1.5 Score=50.54 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=16.5
Q ss_pred EEEEEeCCCCCCHHHHHHH
Q 003713 166 IITITDSGIGMTQQDLVDC 184 (801)
Q Consensus 166 ~l~I~DNGiGMt~eel~~~ 184 (801)
.|+|.|||.||+.++....
T Consensus 326 ~i~v~D~G~Gi~~~~~~~i 344 (540)
T PRK13557 326 SIAVTDTGSGMPPEILARV 344 (540)
T ss_pred EEEEEcCCCCCCHHHHHhc
Confidence 6899999999999987653
No 80
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=89.06 E-value=0.38 Score=57.01 Aligned_cols=43 Identities=21% Similarity=0.424 Sum_probs=28.4
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQ 179 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~e 179 (801)
.++|+|+||..+. ....+.|.+..+.+.-.|+|.|||+||+.+
T Consensus 473 il~ell~NA~kha---------------~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 473 IAREALSNALKHA---------------QASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHhC---------------CCCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 4777777766553 122345555555444578999999999864
No 81
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=88.80 E-value=0.38 Score=56.38 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=28.3
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQ 178 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~ 178 (801)
.+.|++.||..+.. ...+.|++..+.+.-.|+|+|||.||+.
T Consensus 414 il~nlL~NAiKha~---------------~~~I~I~l~~~~~~i~l~V~DnG~Gi~~ 455 (495)
T PRK11644 414 VCQEGLNNIVKHAD---------------ASAVTLQGWQQDERLMLVIEDDGSGLPP 455 (495)
T ss_pred HHHHHHHHHHHhCC---------------CCEEEEEEEEcCCEEEEEEEECCCCCCc
Confidence 56788888876641 2234555554444457999999999974
No 82
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=88.75 E-value=0.65 Score=48.92 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=38.2
Q ss_pred ccchhhHHHHHHHHHhcCCCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCC--cEEEEEeCCCC
Q 003713 98 YEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDN--GIITITDSGIG 175 (801)
Q Consensus 98 ~~Fq~e~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~--~~l~I~DNGiG 175 (801)
..+..|+ .+.|.. ++-||++||.-... . . .....++|.+..+.+. ..++|+|||.|
T Consensus 113 ~~l~~d~--A~~Lgl---------iv~EL~tNa~Khaf----~--~-----~~~G~I~I~~~~~~~~~~~~l~v~deg~G 170 (221)
T COG3920 113 VFLDPDT--AVPLGL---------IVHELVTNALKHAF----L--S-----RPGGEIRITLSREGDGGRFLLTVWDEGGG 170 (221)
T ss_pred eEECchh--hHHHHH---------HHHHHHHHHHHhcC----C--C-----CCCCEEEEEEEEcCCCCeEEEEEEECCCC
Confidence 5565565 445444 67799999987752 1 1 1233445555555554 58999999999
Q ss_pred CCHH
Q 003713 176 MTQQ 179 (801)
Q Consensus 176 Mt~e 179 (801)
+..+
T Consensus 171 ~~~~ 174 (221)
T COG3920 171 PPVE 174 (221)
T ss_pred CCCC
Confidence 8643
No 83
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=88.55 E-value=1.2 Score=52.87 Aligned_cols=74 Identities=19% Similarity=0.365 Sum_probs=46.1
Q ss_pred ceEEEEEc--CCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhccccCCCCCcccccccchhhhhhcccC---
Q 003713 154 LDIRIQTD--KDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSD--- 228 (801)
Q Consensus 154 ~~I~I~~d--~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vad--- 228 (801)
..|.|+.+ .+..++.+.|||+|++.+-+.+-|.-.-+-+ ......| -|+|+.-|-.++.
T Consensus 657 ~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~---------------s~~~y~g-tG~GL~I~kkI~e~H~ 720 (750)
T COG4251 657 PDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLH---------------SRDEYLG-TGLGLAICKKIAERHQ 720 (750)
T ss_pred CceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHHhcC---------------chhhhcC-CCccHHHHHHHHHHhC
Confidence 45666644 4457899999999999999887554221111 1223445 8999987765543
Q ss_pred -eEEEEEecCCCCCcEE
Q 003713 229 -RVVVETKSPKSDKQYV 244 (801)
Q Consensus 229 -kv~V~Sk~~~~~~~~~ 244 (801)
++.|.|+- ++...|.
T Consensus 721 G~i~vEs~~-gEgsTF~ 736 (750)
T COG4251 721 GRIWVESTP-GEGSTFY 736 (750)
T ss_pred ceEEEeecC-CCceeEE
Confidence 46666654 4444443
No 84
>PRK13560 hypothetical protein; Provisional
Probab=87.85 E-value=0.53 Score=57.19 Aligned_cols=45 Identities=24% Similarity=0.379 Sum_probs=30.3
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCC---CcEEEEEeCCCCCCHH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKD---NGIITITDSGIGMTQQ 179 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~---~~~l~I~DNGiGMt~e 179 (801)
.|.+|++||+.+... ......|.|..... .-.|+|.|||+||+.+
T Consensus 715 il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 715 IISELLSNALKHAFP-------------DGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHhhcc-------------CCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 678999999987521 12234555554332 2468999999999875
No 85
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=87.65 E-value=0.91 Score=49.60 Aligned_cols=48 Identities=25% Similarity=0.306 Sum_probs=31.7
Q ss_pred HHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCC------------CcEEEEEeCCCCCCHHHHHH
Q 003713 121 VFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKD------------NGIITITDSGIGMTQQDLVD 183 (801)
Q Consensus 121 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~------------~~~l~I~DNGiGMt~eel~~ 183 (801)
..++.||+||+.|+.. .. ..|.|..... .-.|.|.|||.||+.+.+.+
T Consensus 240 ~vl~nLl~NA~~~~~~-------------~~--~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 299 (348)
T PRK11073 240 QVLLNIVRNALQALGP-------------EG--GTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDT 299 (348)
T ss_pred HHHHHHHHHHHHHhcc-------------CC--CeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhh
Confidence 3688999999998730 11 2344432111 12589999999999988765
No 86
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=86.91 E-value=1.2 Score=52.00 Aligned_cols=54 Identities=20% Similarity=0.442 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHhcCCCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHH
Q 003713 102 AEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQ 179 (801)
Q Consensus 102 ~e~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~e 179 (801)
.+..+.+++|- .+||-++||.-.- .+..+.|.+....+..+++|+|||+|++..
T Consensus 474 lpa~qqvHlLq---------IvREAlsNa~KHa---------------~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 474 LPAHQQVHLLQ---------IVREALSNAIKHA---------------QASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred CCHHHHHHHHH---------HHHHHHHHHHHhc---------------ccCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 45556777765 7999999998664 245567777776667799999999997654
No 87
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=86.35 E-value=2.4 Score=41.90 Aligned_cols=84 Identities=25% Similarity=0.363 Sum_probs=53.7
Q ss_pred hHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHH
Q 003713 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKA 199 (801)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~ 199 (801)
.+++-|++.||+.+.-+. + .+...+.|.+..+.+.-.++|.|.|.|+. ++...+.
T Consensus 42 ~~av~E~~~N~v~Ha~~~------~----~~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~------------- 96 (146)
T COG2172 42 AIAVSEALTNAVKHAYKL------D----PSEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLG------------- 96 (146)
T ss_pred HHHHHHHHHHHHHHHhhc------C----CCCceEEEEEEEcCCeEEEEEEeCCCCCC--CHHHhcC-------------
Confidence 569999999999987421 0 11244566666777778899999996653 3433221
Q ss_pred hhccccCCCCCcccccc---cchhhhhhcccCeEEEEEec
Q 003713 200 MKDSKDAGGDSNLIGQF---GVGFYSAFLVSDRVVVETKS 236 (801)
Q Consensus 200 ~~~~~~~~~~~~~IGqF---GIGf~S~F~vadkv~V~Sk~ 236 (801)
......+.- |.||+-+=-+.|+|.+....
T Consensus 97 --------~~~~~~~~~~~~G~Gl~l~~~~~D~~~~~~~~ 128 (146)
T COG2172 97 --------PGDTTAEGLQEGGLGLFLAKRLMDEFSYERSE 128 (146)
T ss_pred --------CCCCCCcccccccccHHHHhhhheeEEEEecc
Confidence 011222333 77777776688999888544
No 88
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=85.91 E-value=0.54 Score=52.57 Aligned_cols=45 Identities=18% Similarity=0.403 Sum_probs=36.5
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDL 181 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel 181 (801)
+++|.|+||.-.. .+..+.|++..+.+.-.|+|.|||.|.+.+..
T Consensus 283 ivQEaltN~~rHa---------------~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~ 327 (365)
T COG4585 283 IVQEALTNAIRHA---------------QATEVRVTLERTDDELRLEVIDNGVGFDPDKE 327 (365)
T ss_pred HHHHHHHHHHhcc---------------CCceEEEEEEEcCCEEEEEEEECCcCCCcccc
Confidence 8899999998775 35667888887777778999999999876654
No 89
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=83.12 E-value=2.7 Score=51.58 Aligned_cols=55 Identities=18% Similarity=0.354 Sum_probs=41.3
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhh
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQ 190 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~ 190 (801)
.|-=||.||.-.. ++..+++|.+..+.++-.+.|.|||-|++.+++.+-|-...+
T Consensus 779 VLiNLleNA~Kya--------------p~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r 833 (890)
T COG2205 779 VLINLLENALKYA--------------PPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYR 833 (890)
T ss_pred HHHHHHHHHHhhC--------------CCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhc
Confidence 3444778876553 245567788888887788999999999999999987755433
No 90
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=81.01 E-value=3.5 Score=46.13 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=37.0
Q ss_pred ceEEEEEcCCC--cEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhccccCCCCCcccccccchhhhh
Q 003713 154 LDIRIQTDKDN--GIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYSA 223 (801)
Q Consensus 154 ~~I~I~~d~~~--~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~ 223 (801)
.+|.+...... -.|+|.|+|+|++++++.+.|-..-+-.+ ......|.-|+|++-+
T Consensus 362 g~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdk--------------ARsR~~gGTGLGLaIa 419 (459)
T COG5002 362 GRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDK--------------ARSRKMGGTGLGLAIA 419 (459)
T ss_pred CeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhh--------------hhhhcCCCCchhHHHH
Confidence 46666654433 46899999999999999986644322111 1224568889998644
No 91
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=78.56 E-value=6.3 Score=44.48 Aligned_cols=123 Identities=20% Similarity=0.250 Sum_probs=73.6
Q ss_pred hHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHH
Q 003713 120 EVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKA 199 (801)
Q Consensus 120 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~ 199 (801)
...+-||..||..|.-+.- ....+ .-+++.|.|....++-.|.|+|-|=|++..++.+ |..-..|.... .
T Consensus 262 ~ymlfElfKNamrATve~h--~~~~~----~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~dr-lf~Y~ySTa~~---~ 331 (414)
T KOG0787|consen 262 YYMLFELFKNAMRATVEHH--GDDGD----ELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDR-LFSYMYSTAPA---P 331 (414)
T ss_pred HHHHHHHHHHHHHHHHHHh--ccCCC----CCCCeEEEEecCCcceEEEEecCCCCcChhHHHH-HHhhhcccCCC---C
Confidence 4578899999999975331 11111 1355677777777788999999999999999886 43444443221 0
Q ss_pred hhccccCCCCCcccccccchhhhhhcccCeEEEEEecCCCCCcEEEEEecCCCceEEEecCCCCCCCCCccEEEEEecCC
Q 003713 200 MKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVETKSPKSDKQYVWEGEANASSYTIREETNPEKLLPRGTRLTLYLKHD 279 (801)
Q Consensus 200 ~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~Sk~~~~~~~~~w~s~~~~~~y~I~~~~~~~~~~~~GT~I~L~Lk~d 279 (801)
-.+. ....+.-.||-|+=-+=.+| +.++ |...+... .+.||-+.+|||..
T Consensus 332 ~~d~----~~~~plaGfG~GLPisrlYa-------~yf~-------------Gdl~L~Sl------eG~GTD~yI~Lk~l 381 (414)
T KOG0787|consen 332 SSDN----NRTAPLAGFGFGLPISRLYA-------RYFG-------------GDLKLQSL------EGIGTDVYIYLKAL 381 (414)
T ss_pred CCCC----CCcCcccccccCCcHHHHHH-------HHhC-------------CCeeEEee------eccccceEEEeccC
Confidence 0000 11356667777763322221 1111 23333322 37999999999976
Q ss_pred Ccc
Q 003713 280 DKG 282 (801)
Q Consensus 280 ~~e 282 (801)
..+
T Consensus 382 s~~ 384 (414)
T KOG0787|consen 382 SME 384 (414)
T ss_pred Ccc
Confidence 644
No 92
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=75.81 E-value=2.3 Score=52.05 Aligned_cols=94 Identities=22% Similarity=0.313 Sum_probs=56.9
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceE--EEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDI--RIQTDKDNGIITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKA 199 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I--~I~~d~~~~~l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~ 199 (801)
++-|||.||+|=+..+.... .+..-.+..+| +...-..+. |.|+|.||..+-+..++.....+ +.+
T Consensus 150 a~aeLldnalDEi~~~~tf~----~vd~I~p~~d~~i~a~~v~~~~---~s~~gg~~~~~~i~~~m~l~~~~-k~e---- 217 (775)
T KOG1845|consen 150 AIAELLDNALDEITNGATFV----RVDYINPVMDIFIRALVVQLKR---ISDDGGGMKPEVIRKCMSLGYSS-KKE---- 217 (775)
T ss_pred hhhhhccccccccccccceE----EeeeecccccccceeEEeeccc---eeccccccCHHHHHHHHHhhhhh-hhh----
Confidence 79999999999986443210 00000111111 111101111 67899999999999887544333 221
Q ss_pred hhccccCCCCCcccccccchhhh-hhcccCeEEEEEec
Q 003713 200 MKDSKDAGGDSNLIGQFGVGFYS-AFLVSDRVVVETKS 236 (801)
Q Consensus 200 ~~~~~~~~~~~~~IGqFGIGf~S-~F~vadkv~V~Sk~ 236 (801)
-..-+||+|.||.+ ..-++-.+.|.++.
T Consensus 218 ---------~~~tv~q~~~gfktst~rlGa~~i~~~R~ 246 (775)
T KOG1845|consen 218 ---------ANSTVGQYGNGFKTSTMRLGADAIVFSRC 246 (775)
T ss_pred ---------hhhhhhhhccccccchhhhccceeEeehh
Confidence 13578999999985 46688888888884
No 93
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=75.43 E-value=3.2 Score=48.68 Aligned_cols=42 Identities=26% Similarity=0.464 Sum_probs=26.1
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEc-CCCcEEEEEeCCCCCCH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTD-KDNGIITITDSGIGMTQ 178 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DNGiGMt~ 178 (801)
.+.||+.||+.+. ....+.|.+..+ .+.-.|.|.|||+||+.
T Consensus 475 v~~nll~NA~k~~---------------~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 475 IIREATLNAIKHA---------------NASEIAVSCVTNPDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred HHHHHHHHHHhcC---------------CCCeEEEEEEEcCCCEEEEEEEECCcCcCC
Confidence 4677777876543 122244444444 22346899999999984
No 94
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=71.20 E-value=8.7 Score=44.49 Aligned_cols=48 Identities=27% Similarity=0.198 Sum_probs=34.1
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcC---CCcEEEEEeCCCCCCHHHHHHH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDK---DNGIITITDSGIGMTQQDLVDC 184 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DNGiGMt~eel~~~ 184 (801)
.+--||-||+|||. ...+.|.|..+. +.-.|-|.|||-|...+-+.+.
T Consensus 568 VlvNl~~NaldA~~---------------h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkL 618 (673)
T COG4192 568 VLVNLIVNALDAST---------------HFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKL 618 (673)
T ss_pred HHHHHHHHHHhhhc---------------cCCceEEEEeecCcccceEEEEecCCCCCchhHHHHh
Confidence 34458899999995 223567776654 2347899999999988766653
No 95
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=68.36 E-value=8.1 Score=44.91 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=39.9
Q ss_pred CCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCC--CcEEEEEeCCCCCCHHHHHH
Q 003713 116 YSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKD--NGIITITDSGIGMTQQDLVD 183 (801)
Q Consensus 116 Ys~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~--~~~l~I~DNGiGMt~eel~~ 183 (801)
+-+|...|-=||-||.-|+-+. ..+...|.|..-.. .-.+.|.|||+||++.-+..
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~------------~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~ 405 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEP------------KRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEG 405 (456)
T ss_pred ccCchHHHhHHHHHHHHHhccc------------CCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHH
Confidence 4578888888999999998432 12334566654332 34689999999999988765
No 96
>PRK13559 hypothetical protein; Provisional
Probab=64.63 E-value=7.1 Score=42.96 Aligned_cols=44 Identities=23% Similarity=0.098 Sum_probs=26.9
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEE--cCC--CcEEEEEeCCCCCCH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQT--DKD--NGIITITDSGIGMTQ 178 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~--~~~l~I~DNGiGMt~ 178 (801)
.+.|||.||+.+.. . .....+|.|.. ... .-.|.+.|||.||..
T Consensus 271 vl~nLi~NA~k~~~------~-------~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~ 318 (361)
T PRK13559 271 VLHELAVNAIKHGA------L-------SADQGRISISWKPSPEGAGFRIDWQEQGGPTPP 318 (361)
T ss_pred HHHHHHHhHHHhcc------c-------cCCCcEEEEEEEecCCCCeEEEEEECCCCCCCC
Confidence 67789999977631 0 11224555554 332 246788999998543
No 97
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=59.40 E-value=13 Score=45.66 Aligned_cols=125 Identities=22% Similarity=0.271 Sum_probs=68.4
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH--------HHHHHHhhcch
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLV--------DCLGTIAQSGT 193 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~--------~~l~tIa~Sg~ 193 (801)
..-|.+-||.| - .| +...-.|.++++++.+.|.|.+||-|+.-+... -.||..-.|+.
T Consensus 57 i~dEilvNaad-k--~r-----------d~~m~~i~v~i~~e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Lltssn 122 (842)
T KOG0355|consen 57 IFDEILVNAAD-K--QR-----------DPKMNTIKVTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSSN 122 (842)
T ss_pred HHHHHhhcccc-c--cc-----------CCCcceeEEEEccCCCEEEEEeCCCcceeeecccccccchHHHHhhhhhccc
Confidence 45689999999 3 21 233347888999999999999999998755322 12344444442
Q ss_pred hhHHHHhhccccCCCCCcccccccchhhhhhcccCeEEEEE--ecCCCCCcEEEEEecCCC-ceEEEecCCCCCCCCCcc
Q 003713 194 AKFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVSDRVVVET--KSPKSDKQYVWEGEANAS-SYTIREETNPEKLLPRGT 270 (801)
Q Consensus 194 ~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~vadkv~V~S--k~~~~~~~~~w~s~~~~~-~y~I~~~~~~~~~~~~GT 270 (801)
-. +. ...-.-|+-|.|-.=|=..+-+.+|.| +..+......|.++-..+ .-.+....+ +.+|
T Consensus 123 y~------d~----ekK~tggrngygakLcniFs~~f~~Et~d~~~~~~~kQ~w~~nm~~~~~~~i~~~~~-----~~yT 187 (842)
T KOG0355|consen 123 YD------DD----EKKVTGGRNGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVPSTD-----EDYT 187 (842)
T ss_pred cC------CC----ccccccCCCccceeeeeeccccceeeeeehHhHHHHHHhhhcCCcccCCceeecCCC-----CCcc
Confidence 11 00 111223555555444444444555554 332222345787643311 122333332 3499
Q ss_pred EEEEE
Q 003713 271 RLTLY 275 (801)
Q Consensus 271 ~I~L~ 275 (801)
+|++.
T Consensus 188 kitF~ 192 (842)
T KOG0355|consen 188 KITFS 192 (842)
T ss_pred eEEeC
Confidence 99876
No 98
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=53.54 E-value=15 Score=36.40 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=26.9
Q ss_pred EECCCChHHHHHHhhhcCCCCchH---------HHHHHHHHHHHHH
Q 003713 700 EINPEHPIIQNLNAASKNCPDDND---------ALRVVDLLYDAAL 736 (801)
Q Consensus 700 EINp~HPLIk~L~~l~~~d~~d~~---------~~~~a~lLyd~Al 736 (801)
+.+|+||||++|..+...+-.++. +=.+|++.||.=+
T Consensus 17 ~d~p~~plv~~~~~L~q~Nms~~~y~~a~r~YLVFL~Aq~~Yd~yv 62 (147)
T PF06112_consen 17 ADYPNHPLVAKLQALPQNNMSDAEYREAQRNYLVFLIAQHCYDQYV 62 (147)
T ss_pred ccCCCCHHHHHHHhhccCCCCHHHHHHhhhchhhhhhHHHHHHHHH
Confidence 689999999999999877655442 2355777776544
No 99
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=49.76 E-value=17 Score=40.64 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=39.3
Q ss_pred cCCCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHH
Q 003713 114 SLYSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSGIGMTQQDLVD 183 (801)
Q Consensus 114 ~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNGiGMt~eel~~ 183 (801)
.|-+...+++.-.+|-|.--+++- ..++.+.|.+.-+.+.-+++|.|||.|++..++.+
T Consensus 351 ~l~~e~~talyRv~QEaltNIErH-----------a~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~~ 409 (459)
T COG4564 351 KLKPEVATALYRVVQEALTNIERH-----------AGATRVTILLQQMGDMVQLMVRDNGVGFSVKEALQ 409 (459)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhh-----------cCCeEEEEEeccCCcceEEEEecCCCCccchhhcc
Confidence 355556677778888888888642 12333344444444556899999999998877653
No 100
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=45.27 E-value=24 Score=39.96 Aligned_cols=28 Identities=25% Similarity=0.499 Sum_probs=21.6
Q ss_pred CCCCceEEEEEcCCCcEEEEEeCCCCCC
Q 003713 150 DAVDLDIRIQTDKDNGIITITDSGIGMT 177 (801)
Q Consensus 150 ~~~~~~I~I~~d~~~~~l~I~DNGiGMt 177 (801)
++..+.|.++.+.+.-.+.|.|||+|+.
T Consensus 427 ~AS~V~i~l~~~~e~l~Lei~DdG~Gl~ 454 (497)
T COG3851 427 DASAVTIQLWQQDERLMLEIEDDGSGLP 454 (497)
T ss_pred ccceEEEEEeeCCcEEEEEEecCCcCCC
Confidence 3556777777776667899999999965
No 101
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=45.23 E-value=17 Score=44.89 Aligned_cols=51 Identities=24% Similarity=0.468 Sum_probs=37.0
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhccccCCCCCcccccccchhhh-hhcccCeEEEEEec
Q 003713 167 ITITDSGIGMTQQDLVDCLGTIAQSGTAKFLKAMKDSKDAGGDSNLIGQFGVGFYS-AFLVSDRVVVETKS 236 (801)
Q Consensus 167 l~I~DNGiGMt~eel~~~l~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S-~F~vadkv~V~Sk~ 236 (801)
++..|+|+||+.+++...+- | . .....||++|=|+.| .+-.++.+.+.|+.
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~---------f------~----~~~~~ig~ygnG~ksgs~r~gkd~~~~tk~ 53 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAIN---------F------A----VGLYGIGDYGNGLKSGSMRIGKDFILFTKK 53 (775)
T ss_pred cccccCCCCcCchhhhhhhh---------h------c----ccccccccccCcccccccccCcccceeecc
Confidence 57889999999999886431 1 0 244678888888876 46677677777766
No 102
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=35.20 E-value=62 Score=32.04 Aligned_cols=54 Identities=13% Similarity=0.231 Sum_probs=42.2
Q ss_pred ChHHHHHHhhhcCCCCchHHHHHHHHHHHHHH---HhCC-C-CCCCHHHHHHHHHHHHHhhc
Q 003713 705 HPIIQNLNAASKNCPDDNDALRVVDLLYDAAL---VSSG-F-TPENPAELGSKIYEMLGMNL 761 (801)
Q Consensus 705 HPLIk~L~~l~~~d~~d~~~~~~a~lLyd~Al---Ls~G-~-~ledp~~f~~ri~~lL~~~L 761 (801)
||.|+.+.++++ +++.+..++.++|++.. --.| . .+.|=..|..-++.+|..+-
T Consensus 2 ~p~vqefk~lIe---~dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~AP 60 (141)
T PF12588_consen 2 HPVVQEFKDLIE---SDPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMTTAP 60 (141)
T ss_pred ChHHHHHHHHHh---cCHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHhhCC
Confidence 899999999995 46789999999999911 1134 3 57888999999999998643
No 103
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=33.01 E-value=53 Score=38.59 Aligned_cols=86 Identities=30% Similarity=0.361 Sum_probs=53.5
Q ss_pred CCCchHHHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCCcEEEEEeCC---CCCCHHHHHHHHHHHhhcc
Q 003713 116 YSNKEVFLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDNGIITITDSG---IGMTQQDLVDCLGTIAQSG 192 (801)
Q Consensus 116 Ys~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DNG---iGMt~eel~~~l~tIa~Sg 192 (801)
+.-|..+|||+|.||+=.-+ | +. ....+.|.|.- ..|.|.-.| .||+.+++.++ +|-
T Consensus 268 ~dyP~~alREai~NAv~HRD---Y---s~-----~~~~v~I~iyd----DRieI~NPGgl~~gi~~~~l~~~-----~s~ 327 (467)
T COG2865 268 WDYPLEALREAIINAVIHRD---Y---SI-----RGRNVHIEIYD----DRIEITNPGGLPPGITPEDLLKG-----RSK 327 (467)
T ss_pred ccCCHHHHHHHHHHHHHhhc---c---cc-----CCCceEEEEEC----CeEEEECCCCCCCCCChhHcccC-----CCc
Confidence 34578899999999984432 2 11 11234554432 379999977 59999998773 443
Q ss_pred hh-hHHHHhhccccCCCCCcccccccchhhhhhccc
Q 003713 193 TA-KFLKAMKDSKDAGGDSNLIGQFGVGFYSAFLVS 227 (801)
Q Consensus 193 ~~-~f~~~~~~~~~~~~~~~~IGqFGIGf~S~F~va 227 (801)
.+ ..+..+= .+.++|-+.|.|+-=.|-.+
T Consensus 328 ~RNp~LA~~l------~~~~liE~~GSGi~rm~~~~ 357 (467)
T COG2865 328 SRNPVLAKVL------RDMGLIEERGSGIRRMFDLM 357 (467)
T ss_pred ccCHHHHHHH------HHhhhHHHhCccHHHHHHHH
Confidence 22 2222221 35578999999986555444
No 104
>PRK06851 hypothetical protein; Provisional
Probab=32.94 E-value=4.8e+02 Score=29.91 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=43.7
Q ss_pred ccceeeccCCCccccHHHHHhhcCCCCccEEEEecCC--HHHHhcChhHHHHhhCCceEEEecCCccH
Q 003713 529 LLRFFSSQSEDEMISLDEYVENMKPEQKDIYFIAADS--VASARNTPFLEKLLEKDLEVLYLVDPIDE 594 (801)
Q Consensus 529 lLrF~Ts~~~~~~~SL~eYv~rm~e~Qk~IYYit~ds--~~~~~~sp~lE~~k~kg~EVL~l~dpiDE 594 (801)
--+|-+..+..+.+|+=+++- ++-+.+|+++|+. -+...-.-+.+.+.++|+.|.+...|.|.
T Consensus 190 rh~F~ga~Tp~G~~s~~~~l~---~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dP 254 (367)
T PRK06851 190 RHLFLGAITPKGAVDFVPSLT---EGVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDP 254 (367)
T ss_pred eeeeccccCCCcHHhhHHhHh---cccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 445666666678888766665 4567899999833 22333344566788999999999877665
No 105
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=28.27 E-value=2.5e+02 Score=30.82 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=15.1
Q ss_pred eEEEecCC-----ccHHHHHHhhhccCCceEecc
Q 003713 584 EVLYLVDP-----IDEIAVQNLKSYKEKNFVDIS 612 (801)
Q Consensus 584 EVL~l~dp-----iDE~~lq~L~e~~gkkf~~V~ 612 (801)
.|+|++|. +|.+++..+.++...-..-|-
T Consensus 153 ~VlYl~DNaGEi~FD~vlie~ik~~~~~vv~vVr 186 (285)
T COG1578 153 SVLYLTDNAGEIVFDKVLIEVIKELGKKVVVVVR 186 (285)
T ss_pred cEEEEecCCccHHHHHHHHHHHHhcCCceEEEEc
Confidence 55555553 455555555555544443333
No 106
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=26.57 E-value=1.5e+02 Score=33.28 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=29.9
Q ss_pred HHHHHHHcHHhHHHHHHhhccCCcccccCCCCceEEEEEcCCC----cEEEEEeCCCCCCHHHHHH
Q 003713 122 FLRELISNASDALDKLRYLGVTEPELLKDAVDLDIRIQTDKDN----GIITITDSGIGMTQQDLVD 183 (801)
Q Consensus 122 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~----~~l~I~DNGiGMt~eel~~ 183 (801)
++--||.||..|+.-+- . +..... -.+.+-|++++-... -.|.|.|||.|...+=...
T Consensus 245 v~LNlVrNAaqA~~~~~-~--~~g~I~-LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~ 306 (363)
T COG3852 245 VFLNLVRNAAQALGGRA-D--EGGEII-LRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDH 306 (363)
T ss_pred HHHHHHHHHHHHhcCCC-C--CCceEE-EEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhh
Confidence 45569999999985210 0 000000 001122333332221 2578999999998764443
No 107
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=22.58 E-value=1.4e+02 Score=24.72 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=34.3
Q ss_pred eeeccCC-CccccHHHHHhhcCCCCccEEEEec-CCHHHHhcChhHHHHhhCCceEEEe
Q 003713 532 FFSSQSE-DEMISLDEYVENMKPEQKDIYFIAA-DSVASARNTPFLEKLLEKDLEVLYL 588 (801)
Q Consensus 532 F~Ts~~~-~~~~SL~eYv~rm~e~Qk~IYYit~-ds~~~~~~sp~lE~~k~kg~EVL~l 588 (801)
.+|..|. ++.+++++|+.+.++..=...-+|. .+.... .++.+..++.|+.|+.-
T Consensus 4 ~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~--~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 4 VHSDYSLLDGALSPEELVKRAKELGLKAIAITDHGNLFGA--VEFYKAAKKAGIKPIIG 60 (67)
T ss_pred cccCCccccccCCHHHHHHHHHHcCCCEEEEeeCCcccCH--HHHHHHHHHcCCeEEEE
Confidence 4555554 5678899999887765556676766 332211 24455666777777653
No 108
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.62 E-value=1e+02 Score=31.11 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=29.6
Q ss_pred hHHHHhhCCceEEEecCCccHHHHHHhh-hcc---CCceE
Q 003713 574 FLEKLLEKDLEVLYLVDPIDEIAVQNLK-SYK---EKNFV 609 (801)
Q Consensus 574 ~lE~~k~kg~EVL~l~dpiDE~~lq~L~-e~~---gkkf~ 609 (801)
+.+.|+++|+++++|..--|.|+++.+. .+. ..+|.
T Consensus 70 ~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~~~~V~f~ 109 (171)
T KOG0541|consen 70 KADELKSKGVDEIICVSVNDPFVMKAWAKSLGANDHVKFV 109 (171)
T ss_pred HHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCccceEEEE
Confidence 4569999999999999999999999995 454 44554
No 109
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=20.60 E-value=1.1e+02 Score=30.09 Aligned_cols=52 Identities=17% Similarity=0.364 Sum_probs=35.1
Q ss_pred cHHhhcccHHHHHHH---------HHHHHHHHHHHHhhhhcCChHHHHHHHHHHhHHhhhcccCC
Q 003713 464 SREILQESRIVRIMR---------KRLVRKAFDMILGISMSENRADYEKFWENFGKYLKMGCIDD 519 (801)
Q Consensus 464 SRE~LQ~~~~l~~i~---------~~l~~kv~~~L~~la~~~d~e~Y~~f~~~f~~~lK~G~~eD 519 (801)
||+.+++ +++.+. ..+..|++++|..++. .-...-++...|..-.+.|+++|
T Consensus 79 s~~Fl~e--l~kl~~~k~~~~~~~~~Vk~kil~li~~W~~--~f~~~p~~~~~Y~~Lk~~G~i~~ 139 (139)
T cd03567 79 KFRFLNE--LIKLVSPKYLGSRTSEKVKTKIIELLYSWTL--ELPHEPKIKEAYDMLKKQGIIKD 139 (139)
T ss_pred hHHHHHH--HHHHhccccCCCCCCHHHHHHHHHHHHHHHH--HhcccchHHHHHHHHHHCCCcCC
Confidence 3555553 666664 4677899999999885 21223346778888888898875
Done!