Query 003714
Match_columns 800
No_of_seqs 417 out of 2330
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:36:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2012 Ubiquitin activating e 100.0 2E-212 4E-217 1767.9 57.4 789 1-799 221-1013(1013)
2 TIGR01408 Ube1 ubiquitin-activ 100.0 1E-191 3E-196 1719.8 73.9 796 1-800 210-1008(1008)
3 cd01490 Ube1_repeat2 Ubiquitin 100.0 6E-122 1E-126 1021.6 40.5 430 214-753 1-435 (435)
4 KOG2013 SMT3/SUMO-activating c 100.0 7.6E-84 1.6E-88 692.8 25.1 476 205-761 5-499 (603)
5 cd01489 Uba2_SUMO Ubiquitin ac 100.0 9.3E-78 2E-82 646.4 26.9 306 214-698 1-310 (312)
6 cd01484 E1-2_like Ubiquitin ac 100.0 2.1E-64 4.5E-69 524.4 22.1 176 214-396 1-176 (234)
7 cd01488 Uba3_RUB Ubiquitin act 100.0 2E-59 4.4E-64 499.2 19.5 249 214-668 1-259 (291)
8 KOG2015 NEDD8-activating compl 100.0 7.1E-59 1.5E-63 479.4 22.9 345 203-760 31-398 (422)
9 PRK08223 hypothetical protein; 100.0 3.2E-37 7E-42 326.8 16.0 182 191-382 6-202 (287)
10 TIGR02356 adenyl_thiF thiazole 100.0 3.8E-37 8.3E-42 315.3 14.3 176 194-378 1-179 (202)
11 PRK05690 molybdopterin biosynt 100.0 9.4E-37 2E-41 321.1 13.8 171 183-366 5-178 (245)
12 cd00757 ThiF_MoeB_HesA_family 100.0 3.2E-36 6.9E-41 314.3 16.0 164 194-366 1-166 (228)
13 PRK07411 hypothetical protein; 100.0 2.3E-36 5E-41 338.0 14.2 183 182-377 10-196 (390)
14 PRK08328 hypothetical protein; 100.0 2.7E-36 5.8E-41 315.1 12.3 165 193-366 8-173 (231)
15 PRK05597 molybdopterin biosynt 100.0 1.2E-35 2.5E-40 328.7 13.8 177 193-378 7-187 (355)
16 TIGR02355 moeB molybdopterin s 100.0 5.1E-35 1.1E-39 306.7 15.2 166 193-367 3-171 (240)
17 cd01492 Aos1_SUMO Ubiquitin ac 100.0 5E-35 1.1E-39 298.2 13.8 151 193-353 2-152 (197)
18 cd01493 APPBP1_RUB Ubiquitin a 100.0 1.4E-33 3.1E-38 316.1 25.8 167 193-367 1-167 (425)
19 cd01491 Ube1_repeat1 Ubiquitin 100.0 4.2E-35 9.2E-40 312.4 12.6 185 194-394 1-187 (286)
20 PRK07878 molybdopterin biosynt 100.0 8E-35 1.7E-39 326.2 14.9 183 182-377 14-204 (392)
21 PRK05600 thiamine biosynthesis 100.0 9.3E-35 2E-39 322.2 13.4 181 183-376 14-201 (370)
22 cd01485 E1-1_like Ubiquitin ac 100.0 2.5E-34 5.4E-39 293.5 13.4 154 194-354 1-156 (198)
23 PRK12475 thiamine/molybdopteri 100.0 1.1E-33 2.4E-38 310.3 15.0 165 193-366 3-171 (338)
24 PRK07688 thiamine/molybdopteri 100.0 2.1E-33 4.6E-38 308.2 14.5 166 192-366 2-171 (339)
25 COG0476 ThiF Dinucleotide-util 100.0 2.6E-32 5.6E-37 289.5 13.9 166 193-367 9-177 (254)
26 PRK08762 molybdopterin biosynt 100.0 3.9E-32 8.4E-37 303.6 14.9 177 193-378 114-298 (376)
27 KOG2017 Molybdopterin synthase 100.0 4.9E-33 1.1E-37 290.9 5.8 176 181-369 37-215 (427)
28 PRK14851 hypothetical protein; 100.0 2.7E-31 5.9E-36 312.7 14.8 167 191-367 22-190 (679)
29 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 2.4E-31 5.2E-36 277.2 12.7 162 210-380 9-194 (244)
30 PF09358 UBA_e1_C: Ubiquitin-a 100.0 4.7E-32 1E-36 255.2 6.3 123 673-795 1-125 (125)
31 PRK14852 hypothetical protein; 100.0 5.7E-31 1.2E-35 313.3 14.8 166 191-366 311-478 (989)
32 PRK15116 sulfur acceptor prote 100.0 2.4E-30 5.1E-35 273.6 13.0 162 193-363 11-174 (268)
33 PRK07877 hypothetical protein; 100.0 1.8E-29 3.8E-34 297.9 14.8 183 167-365 65-251 (722)
34 cd00755 YgdL_like Family of ac 100.0 6E-29 1.3E-33 258.6 13.9 155 202-364 1-156 (231)
35 PRK08644 thiamine biosynthesis 100.0 7.3E-29 1.6E-33 255.7 14.0 164 191-364 7-173 (212)
36 PF00899 ThiF: ThiF family; I 100.0 2E-28 4.4E-33 235.0 11.8 134 211-353 1-134 (135)
37 TIGR01408 Ube1 ubiquitin-activ 100.0 2.1E-28 4.7E-33 298.2 14.5 150 192-354 4-155 (1008)
38 TIGR01381 E1_like_apg7 E1-like 99.9 1.7E-27 3.7E-32 272.6 15.0 144 205-354 331-490 (664)
39 COG1179 Dinucleotide-utilizing 99.9 1.8E-27 3.9E-32 241.1 11.0 160 191-358 9-169 (263)
40 cd01483 E1_enzyme_family Super 99.9 3.6E-27 7.8E-32 228.5 12.6 133 214-355 1-133 (143)
41 TIGR03603 cyclo_dehy_ocin bact 99.9 1E-27 2.2E-32 260.9 8.2 157 182-366 46-208 (318)
42 cd01486 Apg7 Apg7 is an E1-lik 99.9 4.7E-26 1E-30 241.5 13.6 133 214-353 1-149 (307)
43 cd01487 E1_ThiF_like E1_ThiF_l 99.9 6.1E-26 1.3E-30 227.2 13.2 142 214-365 1-145 (174)
44 PTZ00245 ubiquitin activating 99.9 1.8E-25 3.9E-30 228.6 10.5 115 193-323 7-121 (287)
45 TIGR02354 thiF_fam2 thiamine b 99.9 9.3E-25 2E-29 223.2 14.4 155 198-364 7-167 (200)
46 KOG2016 NEDD8-activating compl 99.9 1E-24 2.2E-29 234.7 10.5 161 191-358 6-166 (523)
47 KOG2014 SMT3/SUMO-activating c 99.9 1.4E-24 2.9E-29 225.0 9.2 160 182-355 5-164 (331)
48 PRK06153 hypothetical protein; 99.9 1.4E-23 3E-28 229.2 12.0 130 204-345 168-300 (393)
49 cd01491 Ube1_repeat1 Ubiquitin 99.9 1.7E-23 3.7E-28 223.5 6.8 83 1-181 203-285 (286)
50 PF02134 UBACT: Repeat in ubiq 99.9 1E-22 2.3E-27 171.1 5.3 66 599-666 1-66 (67)
51 KOG2336 Molybdopterin biosynth 99.9 3.2E-22 6.9E-27 204.2 8.8 166 193-367 60-241 (422)
52 KOG2018 Predicted dinucleotide 99.8 4.2E-20 9.1E-25 191.6 9.7 158 193-358 55-213 (430)
53 KOG2012 Ubiquitin activating e 99.8 1.3E-19 2.9E-24 207.2 11.2 150 191-353 16-165 (1013)
54 KOG2014 SMT3/SUMO-activating c 99.7 1.5E-17 3.3E-22 172.9 7.7 129 42-178 194-322 (331)
55 KOG2016 NEDD8-activating compl 99.7 1.9E-16 4.2E-21 171.3 10.4 132 45-178 382-517 (523)
56 PF10585 UBA_e1_thiolCys: Ubiq 99.6 5.7E-16 1.2E-20 119.2 0.7 45 357-401 1-45 (45)
57 TIGR03693 ocin_ThiF_like putat 99.5 4.6E-14 9.9E-19 161.3 9.4 146 193-364 104-260 (637)
58 KOG2337 Ubiquitin activating E 99.3 1.7E-12 3.7E-17 143.1 8.2 138 206-349 334-487 (669)
59 cd01493 APPBP1_RUB Ubiquitin a 99.3 4.8E-12 1E-16 142.9 12.0 103 74-177 287-420 (425)
60 PF02134 UBACT: Repeat in ubiq 98.3 3.2E-07 7E-12 77.4 1.7 50 498-552 1-50 (67)
61 PF08825 E2_bind: E2 binding d 97.7 4.4E-05 9.4E-10 67.2 4.2 55 709-763 1-62 (84)
62 cd01490 Ube1_repeat2 Ubiquitin 97.7 0.00012 2.6E-09 83.2 8.5 32 595-628 245-276 (435)
63 TIGR03882 cyclo_dehyd_2 bacter 97.5 9.9E-05 2.2E-09 75.5 4.7 95 203-365 96-193 (193)
64 COG1748 LYS9 Saccharopine dehy 97.4 0.00044 9.5E-09 77.4 8.3 100 213-346 2-102 (389)
65 PRK12549 shikimate 5-dehydroge 97.1 0.0013 2.7E-08 71.5 8.2 76 210-319 125-200 (284)
66 PF01488 Shikimate_DH: Shikima 97.0 0.0017 3.7E-08 62.4 7.2 78 209-322 9-86 (135)
67 PRK06718 precorrin-2 dehydroge 96.9 0.0046 1E-07 63.7 9.4 106 209-357 7-112 (202)
68 COG4015 Predicted dinucleotide 96.9 0.0035 7.5E-08 61.0 7.7 124 213-349 19-145 (217)
69 PF13241 NAD_binding_7: Putati 96.4 0.0051 1.1E-07 56.4 5.4 87 209-341 4-90 (103)
70 PRK06719 precorrin-2 dehydroge 96.4 0.017 3.7E-07 57.1 9.5 85 209-335 10-94 (157)
71 TIGR01470 cysG_Nterm siroheme 96.3 0.016 3.4E-07 60.0 9.0 95 210-343 7-101 (205)
72 PF03435 Saccharop_dh: Sacchar 95.9 0.015 3.2E-07 65.8 6.7 97 215-342 1-97 (386)
73 PRK05562 precorrin-2 dehydroge 95.8 0.032 7E-07 58.2 8.3 97 209-344 22-118 (223)
74 PRK07819 3-hydroxybutyryl-CoA 95.7 0.017 3.6E-07 62.8 5.8 168 213-405 6-183 (286)
75 PRK14027 quinate/shikimate deh 95.2 0.042 9E-07 59.7 7.1 78 210-319 125-202 (283)
76 PRK07066 3-hydroxybutyryl-CoA 95.2 0.06 1.3E-06 59.5 8.2 166 213-404 8-179 (321)
77 TIGR01809 Shik-DH-AROM shikima 95.1 0.043 9.3E-07 59.6 6.6 34 210-248 123-156 (282)
78 PRK12548 shikimate 5-dehydroge 95.0 0.058 1.3E-06 58.7 7.5 84 210-319 124-207 (289)
79 PF14732 UAE_UbL: Ubiquitin/SU 95.0 0.015 3.2E-07 51.8 2.3 49 713-761 7-57 (87)
80 PRK00258 aroE shikimate 5-dehy 94.9 0.059 1.3E-06 58.3 7.0 36 209-249 120-155 (278)
81 PF01113 DapB_N: Dihydrodipico 94.9 0.03 6.6E-07 53.0 4.1 99 214-348 2-102 (124)
82 COG0373 HemA Glutamyl-tRNA red 94.8 0.042 9E-07 62.3 5.6 76 209-323 175-250 (414)
83 PF02737 3HCDH_N: 3-hydroxyacy 94.6 0.039 8.4E-07 55.8 4.3 161 214-399 1-170 (180)
84 PF00070 Pyr_redox: Pyridine n 94.5 0.045 9.7E-07 47.4 4.1 30 214-249 1-30 (80)
85 PRK13940 glutamyl-tRNA reducta 94.5 0.057 1.2E-06 61.7 5.9 76 209-322 178-253 (414)
86 cd01492 Aos1_SUMO Ubiquitin ac 94.4 0.025 5.4E-07 58.1 2.5 37 140-176 155-191 (197)
87 PRK14106 murD UDP-N-acetylmura 94.3 0.1 2.2E-06 60.2 7.5 36 210-251 3-38 (450)
88 cd01065 NAD_bind_Shikimate_DH 94.3 0.1 2.3E-06 50.6 6.5 35 210-249 17-51 (155)
89 PRK12749 quinate/shikimate deh 94.2 0.11 2.3E-06 56.7 7.1 52 210-282 122-173 (288)
90 PF02826 2-Hacid_dh_C: D-isome 94.1 0.018 3.9E-07 58.1 0.8 92 208-318 32-126 (178)
91 PRK05808 3-hydroxybutyryl-CoA 94.1 0.3 6.5E-06 52.8 10.3 32 213-250 4-35 (282)
92 COG1648 CysG Siroheme synthase 93.9 0.081 1.7E-06 54.9 5.1 95 209-343 9-104 (210)
93 COG0169 AroE Shikimate 5-dehyd 93.7 0.15 3.2E-06 55.3 6.9 74 211-319 125-198 (283)
94 PF05237 MoeZ_MoeB: MoeZ/MoeB 93.5 0.049 1.1E-06 48.0 2.3 40 137-176 23-63 (84)
95 KOG4169 15-hydroxyprostaglandi 93.4 0.13 2.8E-06 53.4 5.5 84 210-319 3-91 (261)
96 cd01485 E1-1_like Ubiquitin ac 93.2 0.054 1.2E-06 55.7 2.5 36 142-177 158-193 (198)
97 PRK06130 3-hydroxybutyryl-CoA 93.2 0.35 7.5E-06 53.0 9.0 32 213-250 5-36 (311)
98 cd01489 Uba2_SUMO Ubiquitin ac 93.2 0.1 2.2E-06 57.4 4.7 42 497-542 210-251 (312)
99 cd05311 NAD_bind_2_malic_enz N 93.1 0.083 1.8E-06 55.5 3.7 37 209-250 22-60 (226)
100 PRK04148 hypothetical protein; 93.1 0.46 1E-05 45.8 8.4 92 211-341 16-107 (134)
101 COG0111 SerA Phosphoglycerate 92.8 0.13 2.9E-06 56.8 4.9 91 209-319 139-233 (324)
102 cd05291 HicDH_like L-2-hydroxy 92.8 0.31 6.7E-06 53.5 7.7 33 213-249 1-33 (306)
103 PRK09260 3-hydroxybutyryl-CoA 92.7 0.084 1.8E-06 57.3 3.2 33 213-251 2-34 (288)
104 cd01080 NAD_bind_m-THF_DH_Cycl 92.7 0.17 3.7E-06 50.7 5.0 34 209-248 41-75 (168)
105 PF00056 Ldh_1_N: lactate/mala 92.6 0.34 7.3E-06 47.0 6.9 76 213-321 1-79 (141)
106 PRK08293 3-hydroxybutyryl-CoA 92.5 0.75 1.6E-05 49.9 10.3 32 213-250 4-35 (287)
107 PF01118 Semialdhyde_dh: Semia 92.3 0.32 6.8E-06 45.7 6.1 109 214-357 1-112 (121)
108 PRK10637 cysG siroheme synthas 92.2 0.44 9.6E-06 55.3 8.5 107 209-357 9-115 (457)
109 COG0569 TrkA K+ transport syst 92.0 0.53 1.2E-05 49.4 8.1 98 213-343 1-99 (225)
110 PRK00066 ldh L-lactate dehydro 92.0 0.38 8.1E-06 53.1 7.2 75 212-319 6-81 (315)
111 cd05290 LDH_3 A subgroup of L- 92.0 0.38 8.3E-06 52.9 7.2 71 214-319 1-76 (307)
112 PF03446 NAD_binding_2: NAD bi 91.8 0.42 9.1E-06 47.3 6.7 30 213-248 2-31 (163)
113 PF10585 UBA_e1_thiolCys: Ubiq 91.7 0.15 3.3E-06 39.5 2.7 23 442-464 23-45 (45)
114 PRK13403 ketol-acid reductoiso 91.6 0.67 1.5E-05 51.1 8.5 36 207-248 11-46 (335)
115 PTZ00082 L-lactate dehydrogena 91.3 0.59 1.3E-05 51.7 7.8 35 210-249 4-38 (321)
116 cd05293 LDH_1 A subgroup of L- 91.3 0.7 1.5E-05 50.9 8.3 33 212-248 3-35 (312)
117 PRK06197 short chain dehydroge 91.2 0.44 9.6E-06 51.8 6.7 37 208-250 12-49 (306)
118 PRK07530 3-hydroxybutyryl-CoA 91.1 1.9 4.2E-05 46.7 11.5 32 213-250 5-36 (292)
119 PRK05854 short chain dehydroge 91.0 0.55 1.2E-05 51.5 7.2 34 210-249 12-46 (313)
120 cd01078 NAD_bind_H4MPT_DH NADP 90.9 0.61 1.3E-05 47.4 6.9 82 209-321 25-107 (194)
121 PLN02602 lactate dehydrogenase 90.8 0.68 1.5E-05 51.9 7.7 32 213-248 38-69 (350)
122 PRK07531 bifunctional 3-hydrox 90.7 1.2 2.6E-05 52.3 10.0 157 213-399 5-172 (495)
123 PRK06035 3-hydroxyacyl-CoA deh 90.7 0.69 1.5E-05 50.2 7.6 33 213-251 4-36 (291)
124 PRK07063 short chain dehydroge 90.6 0.75 1.6E-05 48.4 7.7 64 209-297 4-68 (260)
125 PLN02819 lysine-ketoglutarate 90.6 0.58 1.3E-05 59.1 7.6 104 211-343 568-679 (1042)
126 PF01210 NAD_Gly3P_dh_N: NAD-d 90.6 0.46 9.9E-06 46.8 5.5 104 214-347 1-106 (157)
127 PRK08410 2-hydroxyacid dehydro 90.5 0.54 1.2E-05 51.8 6.6 88 208-318 141-231 (311)
128 COG1086 Predicted nucleoside-d 90.5 0.94 2E-05 53.0 8.6 89 204-319 242-333 (588)
129 COG0300 DltE Short-chain dehyd 90.4 0.81 1.8E-05 49.1 7.5 63 210-298 4-67 (265)
130 PRK15469 ghrA bifunctional gly 90.2 0.31 6.8E-06 53.7 4.4 35 209-249 133-167 (312)
131 cd00300 LDH_like L-lactate deh 90.2 0.8 1.7E-05 50.2 7.6 72 215-320 1-75 (300)
132 PRK05476 S-adenosyl-L-homocyst 90.1 0.9 1.9E-05 52.1 8.1 35 210-250 210-244 (425)
133 PRK00048 dihydrodipicolinate r 90.1 0.99 2.1E-05 48.3 8.0 92 213-348 2-95 (257)
134 TIGR00872 gnd_rel 6-phosphoglu 90.0 0.28 6E-06 53.6 3.8 31 214-250 2-32 (298)
135 PRK06487 glycerate dehydrogena 89.9 0.57 1.2E-05 51.8 6.2 35 209-249 145-179 (317)
136 PF02558 ApbA: Ketopantoate re 89.9 0.54 1.2E-05 45.5 5.4 29 215-249 1-29 (151)
137 PRK13243 glyoxylate reductase; 89.8 0.5 1.1E-05 52.6 5.7 35 209-249 147-181 (333)
138 PRK14192 bifunctional 5,10-met 89.8 0.57 1.2E-05 50.9 5.9 34 209-248 156-190 (283)
139 PRK11154 fadJ multifunctional 89.7 0.36 7.9E-06 59.1 4.9 157 213-398 310-480 (708)
140 PRK14619 NAD(P)H-dependent gly 89.5 0.95 2.1E-05 49.6 7.6 33 212-250 4-36 (308)
141 PRK15438 erythronate-4-phospha 89.5 0.54 1.2E-05 53.1 5.6 88 209-319 113-207 (378)
142 cd05191 NAD_bind_amino_acid_DH 89.3 0.44 9.6E-06 41.9 3.9 36 209-249 20-55 (86)
143 PRK07062 short chain dehydroge 89.2 1.2 2.6E-05 47.1 7.7 63 210-297 6-69 (265)
144 PF03807 F420_oxidored: NADP o 89.1 1.4 3.1E-05 39.0 7.1 90 214-341 1-92 (96)
145 COG1250 FadB 3-hydroxyacyl-CoA 88.9 0.66 1.4E-05 50.9 5.6 108 213-348 4-122 (307)
146 PRK09242 tropinone reductase; 88.8 1.3 2.8E-05 46.6 7.6 64 209-297 6-70 (257)
147 PRK06932 glycerate dehydrogena 88.7 0.6 1.3E-05 51.5 5.2 35 209-249 144-178 (314)
148 PF10727 Rossmann-like: Rossma 88.6 1.1 2.4E-05 42.7 6.3 26 211-236 9-34 (127)
149 PRK00257 erythronate-4-phospha 88.6 0.65 1.4E-05 52.6 5.4 35 209-249 113-147 (381)
150 PRK11730 fadB multifunctional 88.4 0.52 1.1E-05 57.8 4.9 168 213-405 314-489 (715)
151 PRK06436 glycerate dehydrogena 88.4 0.39 8.4E-06 52.7 3.4 37 208-250 118-154 (303)
152 PRK09599 6-phosphogluconate de 88.2 0.63 1.4E-05 50.9 5.0 118 214-347 2-123 (301)
153 PLN03209 translocon at the inn 88.2 2.1 4.5E-05 50.9 9.4 33 211-249 79-112 (576)
154 PF02056 Glyco_hydro_4: Family 88.1 0.91 2E-05 46.1 5.6 109 214-349 1-113 (183)
155 PRK08618 ornithine cyclodeamin 88.1 1.8 3.9E-05 47.9 8.5 146 138-322 49-203 (325)
156 TIGR02437 FadB fatty oxidation 88.0 0.65 1.4E-05 56.9 5.4 162 213-398 314-483 (714)
157 PRK08251 short chain dehydroge 87.9 1.8 4E-05 45.0 8.1 61 212-297 2-63 (248)
158 TIGR00507 aroE shikimate 5-deh 87.8 1.8 3.8E-05 46.6 8.1 33 210-248 115-147 (270)
159 TIGR00465 ilvC ketol-acid redu 87.8 2.6 5.6E-05 46.6 9.4 27 210-236 1-27 (314)
160 PRK11908 NAD-dependent epimera 87.8 2.3 5.1E-05 47.0 9.3 31 213-249 2-34 (347)
161 cd01075 NAD_bind_Leu_Phe_Val_D 87.8 0.54 1.2E-05 48.4 3.9 36 209-250 25-60 (200)
162 TIGR02440 FadJ fatty oxidation 87.6 0.62 1.3E-05 57.0 4.9 165 213-407 305-483 (699)
163 PRK05708 2-dehydropantoate 2-r 87.6 0.51 1.1E-05 51.8 3.8 33 212-250 2-34 (305)
164 PRK07831 short chain dehydroge 87.5 1.9 4E-05 45.6 7.9 33 210-248 15-49 (262)
165 PRK11880 pyrroline-5-carboxyla 87.4 2.3 5E-05 45.4 8.6 33 213-248 3-35 (267)
166 PLN02780 ketoreductase/ oxidor 87.2 1.9 4E-05 47.6 8.0 58 212-294 53-111 (320)
167 PLN03139 formate dehydrogenase 87.2 0.66 1.4E-05 52.6 4.4 36 208-249 195-230 (386)
168 PTZ00117 malate dehydrogenase; 86.7 0.62 1.3E-05 51.5 3.9 35 211-250 4-38 (319)
169 PLN02206 UDP-glucuronate decar 86.7 2.1 4.7E-05 49.5 8.4 33 211-249 118-151 (442)
170 COG1893 ApbA Ketopantoate redu 86.6 2.8 6E-05 46.2 8.8 23 213-235 1-23 (307)
171 cd01488 Uba3_RUB Ubiquitin act 86.5 1.8 3.9E-05 47.2 7.2 78 98-178 197-274 (291)
172 PRK07576 short chain dehydroge 86.4 1.1 2.5E-05 47.5 5.6 36 209-250 6-42 (264)
173 PRK07478 short chain dehydroge 86.3 1.5 3.2E-05 46.0 6.3 34 210-249 4-38 (254)
174 PRK05867 short chain dehydroge 86.2 1.4 3.1E-05 46.1 6.2 34 210-249 7-41 (253)
175 COG0136 Asd Aspartate-semialde 86.2 2.4 5.1E-05 46.9 7.9 110 213-358 2-113 (334)
176 TIGR02441 fa_ox_alpha_mit fatt 86.2 0.72 1.6E-05 56.7 4.4 163 213-398 336-505 (737)
177 PRK12826 3-ketoacyl-(acyl-carr 86.1 1.4 3.1E-05 45.6 6.1 35 210-250 4-39 (251)
178 TIGR01035 hemA glutamyl-tRNA r 85.9 0.7 1.5E-05 53.1 3.8 36 209-249 177-212 (417)
179 PRK05335 tRNA (uracil-5-)-meth 85.9 0.71 1.5E-05 52.9 3.8 34 212-251 2-35 (436)
180 PF00106 adh_short: short chai 85.8 1.2 2.7E-05 43.2 5.1 61 213-297 1-62 (167)
181 PRK06523 short chain dehydroge 85.7 1.8 4E-05 45.4 6.7 55 209-271 6-61 (260)
182 PRK09496 trkA potassium transp 85.7 2.4 5.2E-05 48.8 8.2 94 210-336 229-322 (453)
183 PLN02350 phosphogluconate dehy 85.7 2.6 5.7E-05 49.3 8.4 123 213-347 7-136 (493)
184 PF02719 Polysacc_synt_2: Poly 85.4 0.47 1E-05 51.6 2.0 41 215-260 1-42 (293)
185 PRK07634 pyrroline-5-carboxyla 85.3 4.1 8.9E-05 42.7 9.1 25 212-236 4-28 (245)
186 PRK08217 fabG 3-ketoacyl-(acyl 85.3 1.8 3.8E-05 45.0 6.3 33 210-248 3-36 (253)
187 PF13460 NAD_binding_10: NADH( 85.2 4.4 9.6E-05 40.1 8.9 86 215-338 1-91 (183)
188 PRK06522 2-dehydropantoate 2-r 85.0 0.89 1.9E-05 49.2 4.0 30 214-249 2-31 (304)
189 COG1063 Tdh Threonine dehydrog 84.9 3.2 6.9E-05 46.5 8.4 95 214-338 171-265 (350)
190 PRK13304 L-aspartate dehydroge 84.7 3.2 6.8E-05 44.7 8.0 23 213-235 2-24 (265)
191 PRK06249 2-dehydropantoate 2-r 84.7 0.89 1.9E-05 50.0 3.8 34 212-251 5-38 (313)
192 PRK11790 D-3-phosphoglycerate 84.6 1.2 2.6E-05 51.0 4.9 35 209-249 148-182 (409)
193 PRK06476 pyrroline-5-carboxyla 84.3 2.9 6.2E-05 44.5 7.4 23 214-236 2-24 (258)
194 PRK06141 ornithine cyclodeamin 84.3 2 4.2E-05 47.4 6.3 142 138-321 48-199 (314)
195 PLN02306 hydroxypyruvate reduc 84.2 1.2 2.6E-05 50.5 4.7 35 209-249 162-197 (386)
196 cd05213 NAD_bind_Glutamyl_tRNA 84.2 0.93 2E-05 49.9 3.7 76 210-324 176-251 (311)
197 PRK09186 flagellin modificatio 84.2 2.6 5.6E-05 44.1 6.9 33 210-248 2-35 (256)
198 PRK07792 fabG 3-ketoacyl-(acyl 84.1 1.9 4.2E-05 47.0 6.2 35 209-249 9-44 (306)
199 PRK12367 short chain dehydroge 84.0 1.3 2.8E-05 46.9 4.5 39 206-250 8-47 (245)
200 PRK14982 acyl-ACP reductase; P 83.9 0.95 2.1E-05 50.4 3.6 36 209-249 152-189 (340)
201 PTZ00431 pyrroline carboxylate 83.9 2.8 6.2E-05 44.8 7.2 37 211-249 2-38 (260)
202 KOG0024 Sorbitol dehydrogenase 83.8 3.1 6.7E-05 45.7 7.2 34 211-249 169-202 (354)
203 PLN02166 dTDP-glucose 4,6-dehy 83.6 3.4 7.4E-05 47.7 8.1 33 212-250 120-153 (436)
204 PRK12490 6-phosphogluconate de 83.6 1.8 4E-05 47.2 5.7 31 214-250 2-32 (299)
205 TIGR00873 gnd 6-phosphoglucona 83.5 1.5 3.3E-05 51.0 5.2 121 214-347 1-127 (467)
206 cd00762 NAD_bind_malic_enz NAD 83.4 0.91 2E-05 48.4 3.1 44 208-251 21-69 (254)
207 PRK07067 sorbitol dehydrogenas 83.4 2.1 4.6E-05 44.9 6.0 36 210-251 4-40 (257)
208 PRK00676 hemA glutamyl-tRNA re 83.4 1 2.2E-05 50.0 3.6 35 208-247 170-204 (338)
209 PRK12480 D-lactate dehydrogena 83.4 1.1 2.4E-05 49.8 3.9 36 209-250 143-178 (330)
210 PRK14175 bifunctional 5,10-met 83.3 2.1 4.6E-05 46.5 5.9 34 209-248 155-189 (286)
211 TIGR02853 spore_dpaA dipicolin 83.2 1.1 2.3E-05 48.9 3.7 35 209-249 148-182 (287)
212 PLN02427 UDP-apiose/xylose syn 83.1 2.7 5.8E-05 47.4 6.9 36 209-249 11-47 (386)
213 cd05296 GH4_P_beta_glucosidase 83.0 2.7 5.9E-05 48.3 7.0 110 213-349 1-113 (419)
214 PRK00045 hemA glutamyl-tRNA re 83.0 1.1 2.4E-05 51.5 3.8 35 210-249 180-214 (423)
215 PRK10537 voltage-gated potassi 82.9 3.2 7E-05 47.3 7.4 36 212-253 240-275 (393)
216 PRK12550 shikimate 5-dehydroge 82.9 1.3 2.9E-05 47.8 4.2 31 213-248 123-153 (272)
217 cd05298 GH4_GlvA_pagL_like Gly 82.8 3.3 7.2E-05 47.8 7.6 110 213-350 1-113 (437)
218 PRK15409 bifunctional glyoxyla 82.8 1.9 4.1E-05 47.8 5.5 34 209-248 142-176 (323)
219 TIGR00137 gid_trmFO tRNA:m(5)U 82.6 1.3 2.7E-05 51.0 4.0 32 213-250 1-32 (433)
220 TIGR02992 ectoine_eutC ectoine 82.5 3.9 8.5E-05 45.3 7.8 145 138-321 50-204 (326)
221 PTZ00142 6-phosphogluconate de 82.5 2 4.4E-05 50.0 5.8 123 213-347 2-130 (470)
222 PRK07814 short chain dehydroge 82.4 2.8 6.1E-05 44.3 6.4 35 210-250 8-43 (263)
223 KOG1209 1-Acyl dihydroxyaceton 82.4 2.8 6.1E-05 43.4 5.9 80 212-297 7-90 (289)
224 cd05211 NAD_bind_Glu_Leu_Phe_V 82.2 1.4 3.1E-05 46.0 3.9 37 209-250 20-56 (217)
225 PRK05875 short chain dehydroge 82.1 4.2 9.1E-05 43.2 7.7 34 210-249 5-39 (276)
226 PRK07340 ornithine cyclodeamin 82.1 2 4.3E-05 47.2 5.2 77 208-321 121-198 (304)
227 PRK05690 molybdopterin biosynt 82.1 0.97 2.1E-05 48.1 2.7 41 136-176 190-231 (245)
228 PRK09496 trkA potassium transp 82.1 4.5 9.7E-05 46.5 8.4 89 213-335 1-89 (453)
229 PRK12384 sorbitol-6-phosphate 82.0 4.6 9.9E-05 42.4 7.8 33 212-250 2-35 (259)
230 TIGR03206 benzo_BadH 2-hydroxy 81.9 3 6.5E-05 43.3 6.3 35 210-250 1-36 (250)
231 PRK06139 short chain dehydroge 81.7 2.7 5.9E-05 46.6 6.2 35 209-249 4-39 (330)
232 PRK05866 short chain dehydroge 81.6 2.8 6.2E-05 45.4 6.2 34 210-249 38-72 (293)
233 PLN02545 3-hydroxybutyryl-CoA 81.6 1.5 3.3E-05 47.7 4.1 32 213-250 5-36 (295)
234 PRK08328 hypothetical protein; 81.5 1 2.2E-05 47.4 2.7 40 137-176 183-223 (231)
235 TIGR03466 HpnA hopanoid-associ 81.5 3.9 8.4E-05 44.3 7.3 31 214-250 2-33 (328)
236 PRK03562 glutathione-regulated 81.3 1.6 3.5E-05 52.7 4.6 89 212-335 400-488 (621)
237 PRK08229 2-dehydropantoate 2-r 81.3 1.4 3E-05 48.9 3.7 32 213-250 3-34 (341)
238 PRK12827 short chain dehydroge 81.2 3.7 8E-05 42.5 6.7 33 210-248 4-37 (249)
239 TIGR02355 moeB molybdopterin s 81.2 1.1 2.3E-05 47.6 2.7 40 137-176 183-223 (240)
240 PRK08291 ectoine utilization p 81.1 4.9 0.00011 44.7 7.9 145 138-321 53-207 (330)
241 PF02254 TrkA_N: TrkA-N domain 81.1 1.9 4.1E-05 39.6 4.0 85 215-334 1-85 (116)
242 KOG1205 Predicted dehydrogenas 81.0 5.2 0.00011 43.4 7.8 92 203-319 3-99 (282)
243 TIGR02632 RhaD_aldol-ADH rhamn 80.9 3.7 8.1E-05 50.1 7.5 34 210-249 412-446 (676)
244 PRK12409 D-amino acid dehydrog 80.9 1.6 3.4E-05 49.6 4.0 33 213-251 2-34 (410)
245 COG1712 Predicted dinucleotide 80.9 5.8 0.00013 41.5 7.6 87 214-340 2-88 (255)
246 PRK08655 prephenate dehydrogen 80.8 2.7 5.8E-05 48.6 5.9 30 214-249 2-32 (437)
247 PRK06398 aldose dehydrogenase; 80.8 4.2 9.1E-05 43.0 7.0 74 209-292 3-78 (258)
248 PRK03659 glutathione-regulated 80.8 4 8.6E-05 49.2 7.6 89 212-335 400-488 (601)
249 cd05292 LDH_2 A subgroup of L- 80.7 1.8 3.8E-05 47.7 4.2 32 214-249 2-33 (308)
250 PRK06720 hypothetical protein; 80.7 4 8.8E-05 40.7 6.5 35 210-250 14-49 (169)
251 PRK07856 short chain dehydroge 80.7 4 8.7E-05 42.7 6.8 36 210-251 4-40 (252)
252 TIGR01327 PGDH D-3-phosphoglyc 80.7 2.5 5.4E-05 50.1 5.7 35 209-249 135-169 (525)
253 PLN00203 glutamyl-tRNA reducta 80.6 1.3 2.8E-05 52.2 3.3 34 210-248 264-297 (519)
254 PRK07097 gluconate 5-dehydroge 80.5 3.5 7.5E-05 43.6 6.3 34 209-248 7-41 (265)
255 PLN02928 oxidoreductase family 80.4 1.5 3.3E-05 49.1 3.6 36 208-249 155-190 (347)
256 PRK07102 short chain dehydroge 80.4 5.6 0.00012 41.3 7.8 32 213-250 2-34 (243)
257 PLN00106 malate dehydrogenase 80.4 1.9 4.1E-05 47.8 4.3 37 211-251 17-54 (323)
258 PRK08125 bifunctional UDP-gluc 80.3 6 0.00013 48.2 9.1 41 205-251 308-350 (660)
259 PLN02968 Probable N-acetyl-gam 80.3 4.3 9.4E-05 46.0 7.2 100 211-346 37-137 (381)
260 PRK11259 solA N-methyltryptoph 80.3 1.6 3.5E-05 48.6 3.9 35 212-252 3-37 (376)
261 PRK06129 3-hydroxyacyl-CoA deh 80.2 1.7 3.7E-05 47.7 3.9 33 213-251 3-35 (308)
262 TIGR01181 dTDP_gluc_dehyt dTDP 80.1 6 0.00013 42.5 8.1 32 214-249 1-33 (317)
263 PF01494 FAD_binding_3: FAD bi 80.1 1.7 3.8E-05 47.2 4.0 33 213-251 2-34 (356)
264 PRK07453 protochlorophyllide o 80.0 4 8.7E-05 44.7 6.8 33 211-249 5-38 (322)
265 COG0039 Mdh Malate/lactate deh 80.0 1.7 3.6E-05 47.8 3.7 31 213-248 1-32 (313)
266 PRK12921 2-dehydropantoate 2-r 80.0 1.8 3.8E-05 47.0 3.9 30 214-249 2-31 (305)
267 PRK15181 Vi polysaccharide bio 79.9 4.2 9.1E-05 45.2 7.0 36 209-250 12-48 (348)
268 PRK06223 malate dehydrogenase; 79.8 1.9 4E-05 47.2 4.0 32 213-249 3-34 (307)
269 TIGR01915 npdG NADPH-dependent 79.8 12 0.00027 38.7 10.0 29 214-248 2-31 (219)
270 PRK05671 aspartate-semialdehyd 79.7 7 0.00015 43.6 8.5 106 213-358 5-112 (336)
271 cd01338 MDH_choloroplast_like 79.7 1.7 3.6E-05 48.2 3.6 36 213-248 3-40 (322)
272 PRK06057 short chain dehydroge 79.6 1.7 3.8E-05 45.6 3.6 35 209-249 4-39 (255)
273 PRK00094 gpsA NAD(P)H-dependen 79.6 1.9 4E-05 47.3 4.0 32 213-250 2-33 (325)
274 PRK06940 short chain dehydroge 79.6 4.3 9.2E-05 43.5 6.7 31 212-249 2-32 (275)
275 PRK05717 oxidoreductase; Valid 79.6 2.5 5.3E-05 44.4 4.8 35 210-250 8-43 (255)
276 TIGR01759 MalateDH-SF1 malate 79.5 1.8 3.8E-05 48.1 3.7 36 213-248 4-41 (323)
277 PRK06181 short chain dehydroge 79.4 4.5 9.7E-05 42.5 6.7 31 213-249 2-33 (263)
278 TIGR01850 argC N-acetyl-gamma- 79.4 5 0.00011 44.9 7.3 98 213-344 1-100 (346)
279 PRK14620 NAD(P)H-dependent gly 79.4 1.9 4.1E-05 47.6 3.9 31 214-250 2-32 (326)
280 PLN03129 NADP-dependent malic 79.3 0.78 1.7E-05 54.1 0.9 89 152-251 252-366 (581)
281 TIGR03376 glycerol3P_DH glycer 79.2 5.8 0.00012 44.4 7.7 22 214-235 1-22 (342)
282 PRK07574 formate dehydrogenase 79.2 1.9 4E-05 49.0 3.8 35 209-249 189-223 (385)
283 PRK08416 7-alpha-hydroxysteroi 79.1 5.7 0.00012 41.9 7.4 34 209-248 5-39 (260)
284 PTZ00325 malate dehydrogenase; 79.0 1.7 3.8E-05 48.1 3.5 36 210-249 6-42 (321)
285 KOG0069 Glyoxylate/hydroxypyru 79.0 1.7 3.7E-05 48.1 3.4 30 206-235 156-185 (336)
286 PRK06125 short chain dehydroge 79.0 5.7 0.00012 41.7 7.3 34 210-249 5-39 (259)
287 PF00670 AdoHcyase_NAD: S-aden 79.0 2.1 4.6E-05 42.6 3.7 38 209-252 20-57 (162)
288 KOG2015 NEDD8-activating compl 78.9 3.9 8.6E-05 44.6 5.9 78 98-178 241-318 (422)
289 PRK07774 short chain dehydroge 78.9 2.7 5.9E-05 43.7 4.8 35 210-250 4-39 (250)
290 PRK05872 short chain dehydroge 78.8 5.6 0.00012 43.0 7.4 34 210-249 7-41 (296)
291 PRK08300 acetaldehyde dehydrog 78.7 7.6 0.00016 42.6 8.2 47 309-359 68-114 (302)
292 TIGR01771 L-LDH-NAD L-lactate 78.7 3.4 7.5E-05 45.3 5.7 28 217-248 1-28 (299)
293 PRK08862 short chain dehydroge 78.7 4.4 9.5E-05 42.2 6.3 33 210-248 3-36 (227)
294 PRK14618 NAD(P)H-dependent gly 78.5 2.1 4.5E-05 47.3 3.9 32 213-250 5-36 (328)
295 PRK05479 ketol-acid reductoiso 78.4 2 4.3E-05 47.7 3.7 35 208-248 13-47 (330)
296 PF01266 DAO: FAD dependent ox 78.4 2.3 4.9E-05 46.4 4.2 35 214-254 1-35 (358)
297 PRK01438 murD UDP-N-acetylmura 78.4 1.9 4.2E-05 50.2 3.8 35 210-250 14-48 (480)
298 PRK00711 D-amino acid dehydrog 78.2 2.1 4.6E-05 48.5 4.0 32 214-251 2-33 (416)
299 TIGR01772 MDH_euk_gproteo mala 78.2 2.3 5E-05 46.9 4.1 33 214-250 1-34 (312)
300 PRK06728 aspartate-semialdehyd 78.2 7.3 0.00016 43.6 8.1 107 213-358 6-115 (347)
301 PRK12743 oxidoreductase; Provi 78.1 5.4 0.00012 41.9 6.8 31 212-248 2-33 (256)
302 PRK08306 dipicolinate synthase 78.1 2.1 4.6E-05 46.8 3.8 35 210-250 150-184 (296)
303 PRK13302 putative L-aspartate 78.1 6.4 0.00014 42.5 7.4 23 212-234 6-28 (271)
304 TIGR01296 asd_B aspartate-semi 78.0 4.7 0.0001 45.0 6.5 90 214-342 1-91 (339)
305 cd00401 AdoHcyase S-adenosyl-L 78.0 2 4.4E-05 49.1 3.7 35 210-250 200-234 (413)
306 TIGR01377 soxA_mon sarcosine o 78.0 2.2 4.8E-05 47.6 4.0 33 214-252 2-34 (380)
307 PRK13301 putative L-aspartate 77.9 6.4 0.00014 42.3 7.1 23 213-235 3-25 (267)
308 PRK05225 ketol-acid reductoiso 77.9 1.2 2.5E-05 51.3 1.7 37 200-236 20-60 (487)
309 PRK08643 acetoin reductase; Va 77.6 5.2 0.00011 41.9 6.5 33 212-250 2-35 (256)
310 PRK07231 fabG 3-ketoacyl-(acyl 77.6 2.1 4.6E-05 44.4 3.6 35 210-250 3-38 (251)
311 PRK13529 malate dehydrogenase; 77.6 1.1 2.3E-05 52.8 1.3 90 152-251 227-339 (563)
312 PRK12748 3-ketoacyl-(acyl-carr 77.5 5.2 0.00011 42.0 6.5 35 210-250 3-40 (256)
313 cd00757 ThiF_MoeB_HesA_family 77.4 1.7 3.6E-05 45.6 2.7 40 136-175 179-219 (228)
314 PRK12744 short chain dehydroge 77.4 5.3 0.00012 41.9 6.5 27 210-236 6-33 (257)
315 TIGR01202 bchC 2-desacetyl-2-h 77.3 7.1 0.00015 42.6 7.7 34 211-249 144-177 (308)
316 PRK06841 short chain dehydroge 77.2 2.5 5.3E-05 44.2 3.9 34 210-249 13-47 (255)
317 PRK15076 alpha-galactosidase; 77.1 6.3 0.00014 45.5 7.4 107 213-349 2-116 (431)
318 PF03949 Malic_M: Malic enzyme 77.1 2.9 6.3E-05 44.7 4.3 43 208-250 21-68 (255)
319 TIGR00036 dapB dihydrodipicoli 77.1 7.7 0.00017 41.7 7.7 36 310-347 67-102 (266)
320 PRK08374 homoserine dehydrogen 77.1 6 0.00013 44.1 7.1 33 310-343 90-122 (336)
321 PRK08945 putative oxoacyl-(acy 77.0 3.9 8.6E-05 42.6 5.4 37 208-250 8-45 (247)
322 TIGR00936 ahcY adenosylhomocys 76.9 2.2 4.8E-05 48.7 3.6 36 210-251 193-228 (406)
323 PRK07680 late competence prote 76.8 7.8 0.00017 41.6 7.7 33 214-248 2-34 (273)
324 PRK05442 malate dehydrogenase; 76.8 2.3 5.1E-05 47.1 3.7 36 213-248 5-42 (326)
325 PRK07109 short chain dehydroge 76.8 4.9 0.00011 44.5 6.3 34 210-249 6-40 (334)
326 PRK07035 short chain dehydroge 76.7 3.2 7E-05 43.3 4.6 35 210-250 6-41 (252)
327 TIGR00518 alaDH alanine dehydr 76.6 2.4 5.1E-05 48.0 3.7 35 210-250 165-199 (370)
328 PRK07677 short chain dehydroge 76.6 6.1 0.00013 41.3 6.7 32 213-250 2-34 (252)
329 TIGR03364 HpnW_proposed FAD de 76.5 2.8 6E-05 46.7 4.3 34 214-253 2-35 (365)
330 PRK07494 2-octaprenyl-6-methox 76.5 2.4 5.1E-05 47.7 3.7 33 213-251 8-40 (388)
331 PRK06185 hypothetical protein; 76.4 2.6 5.6E-05 47.7 4.1 35 211-251 5-39 (407)
332 cd05312 NAD_bind_1_malic_enz N 76.4 2.4 5.3E-05 45.8 3.5 110 208-343 21-139 (279)
333 cd01337 MDH_glyoxysomal_mitoch 76.4 2.5 5.5E-05 46.5 3.8 33 214-250 2-35 (310)
334 TIGR02028 ChlP geranylgeranyl 76.4 2.3 5.1E-05 48.3 3.7 31 214-250 2-32 (398)
335 PRK06947 glucose-1-dehydrogena 76.4 6.9 0.00015 40.7 7.0 24 213-236 3-27 (248)
336 PF13478 XdhC_C: XdhC Rossmann 76.3 2.7 6E-05 40.6 3.6 30 215-250 1-30 (136)
337 PLN02494 adenosylhomocysteinas 76.3 2.6 5.6E-05 48.9 3.9 35 210-250 252-286 (477)
338 PRK07417 arogenate dehydrogena 76.0 2.6 5.6E-05 45.5 3.7 30 214-249 2-31 (279)
339 PRK06935 2-deoxy-D-gluconate 3 76.0 5.4 0.00012 41.9 6.1 36 209-250 12-48 (258)
340 TIGR01832 kduD 2-deoxy-D-gluco 75.9 2.8 6E-05 43.6 3.9 33 210-248 3-36 (248)
341 PTZ00075 Adenosylhomocysteinas 75.9 2.6 5.6E-05 49.0 3.8 36 209-250 251-286 (476)
342 PRK06128 oxidoreductase; Provi 75.9 5.5 0.00012 43.2 6.3 35 208-248 51-86 (300)
343 TIGR03325 BphB_TodD cis-2,3-di 75.8 4.4 9.6E-05 42.7 5.4 35 210-250 3-38 (262)
344 PRK04207 glyceraldehyde-3-phos 75.7 11 0.00023 42.3 8.5 37 308-345 75-111 (341)
345 PRK09880 L-idonate 5-dehydroge 75.6 11 0.00023 41.8 8.6 34 211-249 169-202 (343)
346 PLN02852 ferredoxin-NADP+ redu 75.6 7.8 0.00017 45.5 7.7 42 212-260 26-69 (491)
347 PRK08063 enoyl-(acyl carrier p 75.6 5.4 0.00012 41.4 5.9 26 211-236 3-29 (250)
348 PRK01747 mnmC bifunctional tRN 75.6 2.6 5.6E-05 51.3 4.0 33 213-251 261-293 (662)
349 PRK07889 enoyl-(acyl carrier p 75.5 7.1 0.00015 41.2 6.9 36 209-250 4-42 (256)
350 PRK12769 putative oxidoreducta 75.5 7.5 0.00016 47.3 7.9 34 211-250 326-359 (654)
351 PLN02688 pyrroline-5-carboxyla 75.5 12 0.00026 39.8 8.7 24 213-236 1-24 (266)
352 COG0281 SfcA Malic enzyme [Ene 75.5 2.2 4.7E-05 48.4 2.9 102 208-344 195-300 (432)
353 PRK14874 aspartate-semialdehyd 75.4 7.1 0.00015 43.4 7.1 90 213-341 2-92 (334)
354 PLN02383 aspartate semialdehyd 75.4 8.9 0.00019 42.9 7.8 108 212-358 7-116 (344)
355 cd00650 LDH_MDH_like NAD-depen 75.4 5.2 0.00011 42.8 5.8 32 215-250 1-35 (263)
356 PRK08277 D-mannonate oxidoredu 75.2 4.9 0.00011 42.7 5.6 34 210-249 8-42 (278)
357 PRK12771 putative glutamate sy 75.2 6.1 0.00013 47.2 6.9 34 211-250 136-169 (564)
358 TIGR01373 soxB sarcosine oxida 75.1 3.5 7.5E-05 46.8 4.6 43 212-259 30-73 (407)
359 PRK07523 gluconate 5-dehydroge 75.0 3.1 6.6E-05 43.6 3.9 34 210-249 8-42 (255)
360 PRK08628 short chain dehydroge 74.9 6.4 0.00014 41.2 6.3 35 210-250 5-40 (258)
361 PF05834 Lycopene_cycl: Lycope 74.9 5.5 0.00012 44.9 6.1 66 215-291 2-69 (374)
362 PRK08773 2-octaprenyl-3-methyl 74.9 2.8 6.1E-05 47.2 3.8 34 212-251 6-39 (392)
363 PRK08220 2,3-dihydroxybenzoate 74.8 7.6 0.00016 40.4 6.8 36 210-251 6-42 (252)
364 PRK11101 glpA sn-glycerol-3-ph 74.7 3 6.5E-05 49.6 4.1 35 213-253 7-41 (546)
365 PRK08818 prephenate dehydrogen 74.7 8.4 0.00018 43.6 7.4 34 210-249 2-37 (370)
366 cd00704 MDH Malate dehydrogena 74.7 3.1 6.8E-05 46.1 4.0 38 213-250 1-40 (323)
367 PRK12823 benD 1,6-dihydroxycyc 74.6 3 6.5E-05 43.8 3.7 35 209-249 5-40 (260)
368 PRK08589 short chain dehydroge 74.6 5.2 0.00011 42.6 5.6 34 210-249 4-38 (272)
369 PRK14188 bifunctional 5,10-met 74.6 7.5 0.00016 42.6 6.8 34 209-248 155-189 (296)
370 TIGR00065 ftsZ cell division p 74.5 5.6 0.00012 44.6 6.0 55 207-264 12-68 (349)
371 PLN02520 bifunctional 3-dehydr 74.4 2.9 6.3E-05 49.6 3.9 33 210-248 377-409 (529)
372 PRK08040 putative semialdehyde 74.4 10 0.00022 42.4 7.9 94 211-343 3-97 (336)
373 PRK07502 cyclohexadienyl dehyd 74.3 3 6.6E-05 45.6 3.8 33 213-249 7-39 (307)
374 PRK05714 2-octaprenyl-3-methyl 74.3 2.8 6.1E-05 47.5 3.6 33 213-251 3-35 (405)
375 PRK06171 sorbitol-6-phosphate 74.2 9.3 0.0002 40.2 7.4 37 209-251 6-43 (266)
376 PRK08265 short chain dehydroge 74.1 4.3 9.3E-05 42.9 4.8 35 210-250 4-39 (261)
377 COG1091 RfbD dTDP-4-dehydrorha 74.0 8.6 0.00019 41.7 7.0 96 214-344 2-100 (281)
378 PRK06179 short chain dehydroge 74.0 8.9 0.00019 40.5 7.2 34 212-251 4-38 (270)
379 cd01339 LDH-like_MDH L-lactate 73.9 2.9 6.2E-05 45.7 3.5 31 215-250 1-31 (300)
380 PRK09126 hypothetical protein; 73.9 3 6.4E-05 46.9 3.7 35 212-252 3-37 (392)
381 PRK05597 molybdopterin biosynt 73.9 2.3 4.9E-05 47.8 2.6 40 137-176 188-228 (355)
382 PRK07608 ubiquinone biosynthes 73.8 3.3 7.1E-05 46.4 4.0 34 213-252 6-39 (388)
383 TIGR01763 MalateDH_bact malate 73.7 3.4 7.3E-05 45.4 3.9 32 213-249 2-33 (305)
384 PTZ00345 glycerol-3-phosphate 73.6 11 0.00023 42.6 7.9 97 211-332 10-114 (365)
385 PRK06914 short chain dehydroge 73.6 9.2 0.0002 40.6 7.2 34 211-250 2-36 (280)
386 PRK13018 cell division protein 73.6 8.7 0.00019 43.5 7.2 51 210-263 26-78 (378)
387 PRK12266 glpD glycerol-3-phosp 73.3 3.9 8.5E-05 48.2 4.6 41 213-259 7-47 (508)
388 TIGR01757 Malate-DH_plant mala 73.2 3.5 7.7E-05 46.8 4.0 80 212-319 44-128 (387)
389 PRK08642 fabG 3-ketoacyl-(acyl 73.2 6.7 0.00015 40.7 5.9 33 210-248 3-36 (253)
390 PRK12828 short chain dehydroge 73.1 3.4 7.3E-05 42.4 3.6 35 210-250 5-40 (239)
391 PRK12829 short chain dehydroge 73.1 4.1 8.9E-05 42.7 4.3 36 208-249 7-43 (264)
392 PRK06194 hypothetical protein; 73.1 3.4 7.4E-05 44.1 3.7 35 210-250 4-39 (287)
393 TIGR01758 MDH_euk_cyt malate d 73.1 3.4 7.3E-05 45.8 3.8 36 214-249 1-38 (324)
394 PRK08605 D-lactate dehydrogena 73.1 3.2 6.9E-05 46.2 3.6 35 209-249 143-178 (332)
395 CHL00194 ycf39 Ycf39; Provisio 73.1 15 0.00032 40.2 8.9 30 214-249 2-32 (317)
396 PRK06753 hypothetical protein; 72.9 3.6 7.8E-05 45.9 4.0 33 213-251 1-33 (373)
397 cd01076 NAD_bind_1_Glu_DH NAD( 72.8 3.9 8.5E-05 43.0 4.0 37 208-250 27-64 (227)
398 COG0240 GpsA Glycerol-3-phosph 72.6 13 0.00028 41.2 8.0 24 213-236 2-25 (329)
399 PTZ00317 NADP-dependent malic 72.6 1.7 3.8E-05 51.1 1.4 90 152-251 229-341 (559)
400 PRK11728 hydroxyglutarate oxid 72.6 3.8 8.2E-05 46.3 4.1 33 213-251 3-37 (393)
401 PRK12937 short chain dehydroge 72.4 8.4 0.00018 39.8 6.4 33 210-248 3-36 (245)
402 PRK07236 hypothetical protein; 72.4 3.4 7.5E-05 46.5 3.7 34 211-250 5-38 (386)
403 PTZ00188 adrenodoxin reductase 72.3 13 0.00027 43.7 8.2 97 211-322 38-137 (506)
404 TIGR01292 TRX_reduct thioredox 72.3 3.9 8.4E-05 43.7 4.0 32 214-251 2-33 (300)
405 PLN02989 cinnamyl-alcohol dehy 72.3 11 0.00025 41.0 7.7 33 212-250 5-38 (325)
406 PRK08013 oxidoreductase; Provi 72.2 3.4 7.4E-05 46.9 3.7 34 212-251 3-36 (400)
407 PRK08213 gluconate 5-dehydroge 72.2 3.6 7.8E-05 43.2 3.6 35 209-249 9-44 (259)
408 PRK12481 2-deoxy-D-gluconate 3 72.2 7.6 0.00017 40.8 6.1 34 210-249 6-40 (251)
409 PRK06847 hypothetical protein; 72.1 3.8 8.3E-05 45.7 4.0 34 212-251 4-37 (375)
410 PRK12779 putative bifunctional 72.1 8 0.00017 49.1 7.2 34 211-250 305-338 (944)
411 PLN02464 glycerol-3-phosphate 72.0 3.6 7.9E-05 49.8 4.0 41 213-259 72-112 (627)
412 PRK08850 2-octaprenyl-6-methox 71.8 3.7 7.9E-05 46.6 3.8 33 212-250 4-36 (405)
413 PRK06198 short chain dehydroge 71.7 8.3 0.00018 40.4 6.2 36 210-250 4-40 (260)
414 PRK05855 short chain dehydroge 71.7 6.7 0.00015 46.2 6.1 39 205-249 308-347 (582)
415 PRK02318 mannitol-1-phosphate 71.7 2.8 6.1E-05 47.5 2.8 45 213-263 1-46 (381)
416 PRK08703 short chain dehydroge 71.7 4.2 9.2E-05 42.1 3.9 34 210-249 4-38 (239)
417 PRK08177 short chain dehydroge 71.6 7 0.00015 40.1 5.6 33 213-251 2-35 (225)
418 PLN03096 glyceraldehyde-3-phos 71.6 6.1 0.00013 44.9 5.3 133 211-359 59-196 (395)
419 PRK06184 hypothetical protein; 71.4 3.5 7.5E-05 48.3 3.6 33 212-250 3-35 (502)
420 TIGR02023 BchP-ChlP geranylger 71.4 3.7 8E-05 46.3 3.7 31 214-250 2-32 (388)
421 PRK06138 short chain dehydroge 71.3 4.2 9.1E-05 42.3 3.8 34 210-249 3-37 (252)
422 PRK07060 short chain dehydroge 71.3 4.2 9.2E-05 42.0 3.9 34 210-249 7-41 (245)
423 PRK06172 short chain dehydroge 71.3 4.2 9.1E-05 42.5 3.9 34 210-249 5-39 (253)
424 PRK07878 molybdopterin biosynt 71.3 2.8 6E-05 47.8 2.7 41 137-177 206-247 (392)
425 COG0665 DadA Glycine/D-amino a 71.3 4.4 9.6E-05 45.2 4.3 42 211-258 3-44 (387)
426 COG2085 Predicted dinucleotide 71.2 12 0.00025 39.0 6.8 137 213-353 2-189 (211)
427 TIGR01505 tartro_sem_red 2-hyd 71.2 4.1 8.9E-05 44.1 3.9 31 214-250 1-31 (291)
428 COG1249 Lpd Pyruvate/2-oxoglut 71.2 4.2 9E-05 47.3 4.0 32 212-249 173-204 (454)
429 TIGR02032 GG-red-SF geranylger 71.2 4.2 9.1E-05 43.2 3.9 33 214-252 2-34 (295)
430 PRK08339 short chain dehydroge 71.1 4.4 9.5E-05 43.0 4.0 34 210-249 6-40 (263)
431 TIGR02279 PaaC-3OHAcCoADH 3-hy 71.1 4 8.7E-05 48.0 4.0 33 212-250 5-37 (503)
432 TIGR01179 galE UDP-glucose-4-e 71.0 15 0.00033 39.5 8.3 29 214-248 1-30 (328)
433 PLN02256 arogenate dehydrogena 71.0 3.9 8.4E-05 45.0 3.6 35 209-249 33-67 (304)
434 PRK07364 2-octaprenyl-6-methox 71.0 4 8.6E-05 46.3 3.8 33 213-251 19-51 (415)
435 PRK09310 aroDE bifunctional 3- 71.0 3.9 8.4E-05 47.8 3.8 33 210-248 330-362 (477)
436 PRK00141 murD UDP-N-acetylmura 71.0 4 8.7E-05 47.6 4.0 37 208-250 11-47 (473)
437 PRK05868 hypothetical protein; 70.9 4.3 9.4E-05 45.6 4.1 32 213-250 2-33 (372)
438 PRK07791 short chain dehydroge 70.9 9.6 0.00021 41.0 6.6 35 209-249 3-38 (286)
439 PRK06500 short chain dehydroge 70.9 4.1 8.8E-05 42.3 3.6 35 210-250 4-39 (249)
440 PRK06550 fabG 3-ketoacyl-(acyl 70.9 8.2 0.00018 39.7 5.9 36 210-251 3-39 (235)
441 PRK08762 molybdopterin biosynt 70.9 2.9 6.2E-05 47.4 2.6 40 137-176 299-339 (376)
442 PRK12939 short chain dehydroge 70.8 4.4 9.5E-05 42.0 3.8 33 210-248 5-38 (250)
443 PLN02253 xanthoxin dehydrogena 70.7 4.1 8.9E-05 43.4 3.7 35 209-249 15-50 (280)
444 TIGR01984 UbiH 2-polyprenyl-6- 70.6 3.8 8.1E-05 45.8 3.5 32 214-251 1-33 (382)
445 PRK11559 garR tartronate semia 70.5 4.5 9.8E-05 43.9 4.0 32 213-250 3-34 (296)
446 PRK08020 ubiF 2-octaprenyl-3-m 70.5 4 8.7E-05 45.9 3.7 33 213-251 6-38 (391)
447 PRK08244 hypothetical protein; 70.4 4.1 9E-05 47.6 3.9 32 213-250 3-34 (493)
448 PRK08163 salicylate hydroxylas 70.3 4.3 9.2E-05 45.7 3.9 34 212-251 4-37 (396)
449 COG0654 UbiH 2-polyprenyl-6-me 70.2 4.4 9.5E-05 45.8 4.0 33 212-250 2-34 (387)
450 TIGR03026 NDP-sugDHase nucleot 70.1 3.8 8.2E-05 46.9 3.4 41 214-260 2-42 (411)
451 cd02201 FtsZ_type1 FtsZ is a G 70.1 11 0.00024 41.4 6.9 49 213-264 1-51 (304)
452 PRK07251 pyridine nucleotide-d 70.1 4.5 9.8E-05 46.5 4.1 33 212-250 157-189 (438)
453 KOG1014 17 beta-hydroxysteroid 70.1 16 0.00035 40.0 7.9 83 209-319 47-134 (312)
454 PRK08303 short chain dehydroge 70.0 9 0.0002 41.9 6.2 35 210-250 6-41 (305)
455 PRK07588 hypothetical protein; 70.0 4.5 9.8E-05 45.5 4.0 32 213-250 1-32 (391)
456 TIGR02622 CDP_4_6_dhtase CDP-g 70.0 4.5 9.8E-05 44.8 3.9 36 210-251 2-38 (349)
457 KOG2013 SMT3/SUMO-activating c 70.0 2.6 5.7E-05 48.2 2.0 63 450-526 305-367 (603)
458 PRK09072 short chain dehydroge 69.9 4.7 0.0001 42.5 3.9 34 210-249 3-37 (263)
459 PRK10538 malonic semialdehyde 69.9 8.1 0.00018 40.3 5.7 31 214-250 2-33 (248)
460 PRK08268 3-hydroxy-acyl-CoA de 69.9 4.5 9.8E-05 47.7 4.1 32 213-250 8-39 (507)
461 PRK09134 short chain dehydroge 69.8 11 0.00023 39.6 6.6 32 211-248 8-40 (258)
462 PRK06113 7-alpha-hydroxysteroi 69.7 4.4 9.5E-05 42.5 3.6 33 210-248 9-42 (255)
463 PRK06617 2-octaprenyl-6-methox 69.6 4.5 9.7E-05 45.4 3.8 33 213-251 2-34 (374)
464 PRK05565 fabG 3-ketoacyl-(acyl 69.6 4.9 0.00011 41.5 3.9 33 210-248 3-37 (247)
465 PLN02985 squalene monooxygenas 69.6 4.6 9.9E-05 47.7 4.0 33 213-251 44-76 (514)
466 PRK06200 2,3-dihydroxy-2,3-dih 69.5 4.8 0.0001 42.4 3.8 35 210-250 4-39 (263)
467 cd01336 MDH_cytoplasmic_cytoso 69.5 4.5 9.7E-05 44.9 3.7 38 213-250 3-42 (325)
468 PRK05557 fabG 3-ketoacyl-(acyl 69.4 11 0.00024 38.7 6.6 27 210-236 3-30 (248)
469 PRK07825 short chain dehydroge 69.4 4.8 0.0001 42.7 3.8 35 210-250 3-38 (273)
470 TIGR03329 Phn_aa_oxid putative 69.4 5.5 0.00012 46.2 4.6 42 213-260 25-68 (460)
471 COG1052 LdhA Lactate dehydroge 69.4 6.3 0.00014 43.7 4.8 35 209-249 143-177 (324)
472 PRK08264 short chain dehydroge 69.4 5 0.00011 41.4 3.9 36 210-250 4-40 (238)
473 PRK14727 putative mercuric red 69.2 4.8 0.0001 47.0 4.1 33 212-250 188-220 (479)
474 PRK07411 hypothetical protein; 69.1 3.3 7.2E-05 47.1 2.7 40 137-176 198-238 (390)
475 cd08239 THR_DH_like L-threonin 69.1 11 0.00025 41.2 6.8 33 212-249 164-196 (339)
476 PRK08849 2-octaprenyl-3-methyl 69.0 4.3 9.4E-05 45.7 3.6 32 213-250 4-35 (384)
477 PRK05650 short chain dehydroge 68.9 12 0.00025 39.7 6.7 30 214-249 2-32 (270)
478 TIGR01988 Ubi-OHases Ubiquinon 68.9 4.6 9.9E-05 45.0 3.7 33 214-252 1-33 (385)
479 PRK00436 argC N-acetyl-gamma-g 68.9 14 0.0003 41.3 7.5 34 309-343 66-99 (343)
480 PRK06115 dihydrolipoamide dehy 68.8 4.8 0.0001 46.8 3.9 32 212-249 174-205 (466)
481 PRK08223 hypothetical protein; 68.7 3.5 7.5E-05 44.9 2.5 38 140-177 218-257 (287)
482 PRK07326 short chain dehydroge 68.7 5.4 0.00012 41.0 4.0 33 211-249 5-38 (237)
483 PRK11064 wecC UDP-N-acetyl-D-m 68.6 4.9 0.00011 46.1 3.9 41 213-259 4-44 (415)
484 PTZ00052 thioredoxin reductase 68.5 5.1 0.00011 47.1 4.1 32 212-249 182-213 (499)
485 KOG1208 Dehydrogenases with di 68.5 15 0.00032 40.7 7.4 62 211-297 34-96 (314)
486 PRK13581 D-3-phosphoglycerate 68.4 4.7 0.0001 47.8 3.8 35 209-249 137-171 (526)
487 PRK08132 FAD-dependent oxidore 68.3 4.8 0.0001 47.8 3.9 34 212-251 23-56 (547)
488 PRK08993 2-deoxy-D-gluconate 3 68.3 11 0.00024 39.5 6.3 33 210-248 8-41 (253)
489 PRK13512 coenzyme A disulfide 68.2 5.7 0.00012 45.8 4.4 33 212-250 148-180 (438)
490 PRK09754 phenylpropionate diox 68.2 5.1 0.00011 45.4 3.9 37 211-251 2-38 (396)
491 cd05294 LDH-like_MDH_nadp A la 67.9 5.9 0.00013 43.6 4.2 34 213-250 1-35 (309)
492 PRK06126 hypothetical protein; 67.9 4.9 0.00011 47.6 3.9 33 212-250 7-39 (545)
493 PRK08243 4-hydroxybenzoate 3-m 67.9 5.3 0.00011 45.1 4.0 34 212-251 2-35 (392)
494 PRK08507 prephenate dehydrogen 67.9 5.7 0.00012 42.7 4.1 31 214-248 2-32 (275)
495 COG1087 GalE UDP-glucose 4-epi 67.8 31 0.00067 37.8 9.4 115 213-350 1-124 (329)
496 PRK06196 oxidoreductase; Provi 67.8 5.4 0.00012 43.6 3.9 35 210-250 24-59 (315)
497 PRK07533 enoyl-(acyl carrier p 67.8 5.7 0.00012 41.9 4.0 34 210-249 8-44 (258)
498 PRK08594 enoyl-(acyl carrier p 67.8 13 0.00029 39.3 6.8 34 210-249 5-41 (257)
499 PRK06124 gluconate 5-dehydroge 67.7 5.6 0.00012 41.6 3.9 35 210-250 9-44 (256)
500 cd08230 glucose_DH Glucose deh 67.7 19 0.00041 39.9 8.3 33 211-249 172-204 (355)
No 1
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-212 Score=1767.91 Aligned_cols=789 Identities=59% Similarity=1.025 Sum_probs=765.9
Q ss_pred CCCCCCCCceeEEEcCCceEEEecCCCccCccccCceEEEEeeceEEecccHHHHhcCCCccccccCcCCCCCchHHHHH
Q 003714 1 MTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAF 80 (800)
Q Consensus 1 m~~ln~~~~~~i~v~~~~~f~i~~dt~~~~~y~~gg~~~qvK~p~~~~f~sL~e~l~~p~~~~~~d~~k~~r~~~l~~~l 80 (800)
|+|||||+|++|+|++||+|+| |||+.|++|++||+++|||+|++++||||+++|..| +++.+||.|++|++++|.+|
T Consensus 221 m~eLN~~~P~kI~v~~p~sf~I-gdt~~f~~y~~GGi~tQVK~Pk~isfKsL~~~L~~P-~fl~~df~k~~rp~~lH~af 298 (1013)
T KOG2012|consen 221 MTELNDCKPRKITVLGPYSFSI-GDTTEFGEYKKGGIFTQVKVPKTISFKSLREALKEP-EFLISDFAKFDRPPQLHLAF 298 (1013)
T ss_pred ccccCCCCceEEEEecCceEEe-ccccchhhhhcCceeEEeecCceEecccHHHhhcCC-CeeeeccccccccHHHHHHH
Confidence 8999999999999999999999 999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhhhccccchhHHHhhhhhhhhhhhccc
Q 003714 81 QALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACS 160 (800)
Q Consensus 81 ~aL~~F~~~~gr~P~~~~~~D~~~l~~i~~~i~~~~~~~~~~~l~~~~i~~~~~~~~~el~PvaA~iGGi~aQEviK~it 160 (800)
+||++|+++|||+|.|++++|+++|++++..+.+..+ ...++++++|++|+.++++.+.||+|++||++||||+|+||
T Consensus 299 ~AL~~F~~~~Gr~P~p~~e~DA~~l~~l~~~i~~~~~--~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~s 376 (1013)
T KOG2012|consen 299 QALHQFQEAHGRLPRPGNEEDAEELVELARDISEGLG--LEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACS 376 (1013)
T ss_pred HHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhhhhcc--ccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhc
Confidence 9999999999999999999999999999999988764 34589999999999999999999999999999999999999
Q ss_pred CccccccceeeecccCCCCCC--CCCccCCCCccCcchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhcccc
Q 003714 161 GKFHPLYQFFYFDSVESLPTE--PLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSC 238 (800)
Q Consensus 161 ~k~~Pi~q~~~fd~~~~l~~~--~l~~~~~~~~~~RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~ 238 (800)
|||+||.||||||++|+||+. +++++++.|.++|||.||++||...|+||.++++++|||||||||+|||||+|||+|
T Consensus 377 gKF~PL~Q~lYfDale~LP~d~~~~~e~d~~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~ 456 (1013)
T KOG2012|consen 377 GKFTPLKQWLYFDALESLPSDNLPPSEEDCQPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGC 456 (1013)
T ss_pred cCccchhHheehhhHhhCCCcCCCCCHHHcccccCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeecc
Confidence 999999999999999999975 788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEc
Q 003714 239 GNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINA 318 (800)
Q Consensus 239 ~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a 318 (800)
|..|.|+|+|||.||.||||||||||+.|||++||++||+++..|||+++|+++..++++++|.+|+++||++.|+|++|
T Consensus 457 g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanA 536 (1013)
T KOG2012|consen 457 GNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANA 536 (1013)
T ss_pred CCCCceEEeccchhhhccccceeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHhhhcccccccEEEecccCcccceEEEeCCcccccCCCCCCCCCCCCCccccCCCCCchhHHHHHHHHhhh
Q 003714 319 LDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEG 398 (800)
Q Consensus 319 ~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v~~~ip~~t~~y~~~~~~~~~~~p~ctl~~fP~~~~h~i~wA~~~F~~ 398 (800)
+||++||+|++++|+.+.+||+++||+|++|++|+++|++||+|++++|||+|++|+||+++||+.|+|||+|||+.||+
T Consensus 537 LDNVdAR~YvD~RCv~~~kPLLESGTlGTKGntQVvvPhlTEsY~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~eFEg 616 (1013)
T KOG2012|consen 537 LDNVDARRYVDRRCVYYRKPLLESGTLGTKGNTQVVVPHLTESYGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARDEFEG 616 (1013)
T ss_pred hcchhhhhhhhhhhhhhccchhhccCcCCccceeEEeccccccccccCCCcccCCceeeeccCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccChhHHhhhcCCchhHhhhhhhcCchhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhCCccc
Q 003714 399 LLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDA 478 (800)
Q Consensus 399 ~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~c~~~A~~~f~~~F~~~I~~ll~~~p~d~ 478 (800)
+|.+.++.+|+||++|..+...++..++.+..+.|+.+.+.|. .+|.+|+||++|||..|+++|+++|.|||++||+|.
T Consensus 617 ~F~~~~e~vN~yls~p~f~e~sl~~~~~~~~~~~l~~v~~~l~-~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~ 695 (1013)
T KOG2012|consen 617 LFKQSAENVNKYLSDPVFYETSLKLIGEPQSLETLERVVDCLS-ERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDA 695 (1013)
T ss_pred HhhCCHHHHHHHhcCchHHHHHHhhccCcchhHHHHHHHHHhh-cCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCccc
Confidence 9999999999999999988888888888999999999999997 999999999999999999999999999999999999
Q ss_pred cccCCCCCccCCCCCCCccccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHhhhcCCCCcCCCCCcccccc
Q 003714 479 ATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTD 558 (800)
Q Consensus 479 ~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 558 (800)
+|++|.|||+||||||+|++||.++++|+.||++||+|||.+|||+.. .++.++++++..+++|+|+|+++.+|.++
T Consensus 696 ~t~~G~pFWs~pKr~P~pl~Fd~n~~~hl~fv~Aaa~l~a~~~gi~~~---~d~~~~~~~~~~v~~p~f~P~~~~~i~~~ 772 (1013)
T KOG2012|consen 696 KTSDGAPFWSGPKRCPRPLEFDVNDPLHLNFVQAAANLRAEVYGIPGS---QDREALAELLERVIVPEFEPKQKVKIVVE 772 (1013)
T ss_pred ccCCCCcCCCCCCCCCCceeecCCCchhHHHHHHHHHHHHHhcCCCcc---cCHHHhhhhHhhcCCCccccccCCeeccc
Confidence 999999999999999999999999999999999999999999999984 67889999999999999999999999999
Q ss_pred cccccccccccccHHHHHHHHHHHHHhhhcCCCCCCcCCceecccCCCCchhHHHHHhhhhhhhccCCCCCCHHHHHHHh
Q 003714 559 EKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIA 638 (800)
Q Consensus 559 e~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~FeKDDd~n~hidFV~AasNLRa~ny~I~~~~~~~~k~iA 638 (800)
+.+....+.+.++.+.+++|...+..+... .++++.|+.||||||+|+|||||+|||||||.||+||++||+++|+||
T Consensus 773 ~~~~~~~~~s~d~~~~i~~l~~~l~~~~~~--~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~K~Ia 850 (1013)
T KOG2012|consen 773 EAELAASSASVDDSAAIDQLNKALPSPSVL--PSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKTKRIA 850 (1013)
T ss_pred ccccccccccCCchHHHHHHhhcccccccC--CCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhhheee
Confidence 998887777888888999999999887663 447899999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhHHHHHHHHHHHHHHHhhCCCCccccccccccccccccccCCCCCCccccc-CCCcceEEEEEEeCCCCCH
Q 003714 639 GRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKH-RDMSWTVWDRWILKDNPTL 717 (800)
Q Consensus 639 G~IIPAIaTTtA~VaGl~~lEl~K~l~~~~~~~~~rn~f~nla~p~~~~~eP~~~~~~~~-~~~~~t~wd~~~v~~~~TL 717 (800)
|+||||||||||+|+||+|||+||++.|+.+++.|||+|+|||+|+|+++||.++++..+ .+.+||+||||++.+++||
T Consensus 851 GkIIPAIATtTa~v~Glv~LElyKv~~G~~~~e~~Kn~flnLAlp~f~~~ep~~~pk~~~~~~~~~tlWdR~~v~g~~tL 930 (1013)
T KOG2012|consen 851 GKIIPAIATTTAAVSGLVCLELYKVVDGKRPVEAYKNTFLNLALPFFSFAEPLAAPKVQYHNDLSWTLWDRWEVKGEPTL 930 (1013)
T ss_pred eeEEEEEeehhHHHHHHHHhhhhhhccCCCchHHhhhhhhcccccceeecccCCCcceeeecccceeeeEEEEecCCCCH
Confidence 999999999999999999999999999988999999999999999999999999888776 4559999999999999999
Q ss_pred HHHHHHHHHc-CCceeeeecCCceeecCCCcchhhcccCcHHHHHHhhhccCCCCceeEEEEEEEeecCCCCccccCeEE
Q 003714 718 RELIQWLKDK-GLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLIS 796 (800)
Q Consensus 718 ~~li~~~~~~-~l~~~~i~~g~~~lY~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~d~~~~~v~~P~v~ 796 (800)
++|+++++++ |++++||++|+++||++|||++++||+++++||++.++|+++|++++.|+|+++|+|+||+|+++|+||
T Consensus 931 ~~~L~~~~~~~gl~i~mls~G~~lly~~~~~k~~erl~~~v~elv~~~~k~~~~~~~~~lvle~~~~d~~~eDve~P~v~ 1010 (1013)
T KOG2012|consen 931 REFLDHLEEQHGLEITMLSQGVSLLYASFMPKHAERLPLRVTELVRDVTKKKLPPHVRHLVLEVACEDDDDEDVEVPPVR 1010 (1013)
T ss_pred HHHHHHHhhhcCceEEEEeccceeehhhhhhHHHHhcCCcHHHHHHHHhcccCCCcceEEEEEEecCCCCCCcCCCCceE
Confidence 9999999988 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEe
Q 003714 797 IYF 799 (800)
Q Consensus 797 ~~~ 799 (800)
|+|
T Consensus 1011 y~f 1013 (1013)
T KOG2012|consen 1011 YYF 1013 (1013)
T ss_pred EeC
Confidence 986
No 2
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=1.5e-191 Score=1719.80 Aligned_cols=796 Identities=52% Similarity=0.880 Sum_probs=756.1
Q ss_pred CCCCCCCCceeEEEcCCceEEEecCCCccCccccCceEEEEeeceEEecccHHHHhcCCCccccccCcCCCCCchHHHHH
Q 003714 1 MTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAF 80 (800)
Q Consensus 1 m~~ln~~~~~~i~v~~~~~f~i~~dt~~~~~y~~gg~~~qvK~p~~~~f~sL~e~l~~p~~~~~~d~~k~~r~~~l~~~l 80 (800)
|+|||+++|++|+|++||+|+| |||+.|++|++||+++|||+|++++|+||+++|..| +++.+||.|++|+.++|++|
T Consensus 210 m~~lN~~~~~~i~~~~~~~f~i-~dt~~~~~y~~gG~~~qvK~p~~~~Fksl~~~l~~p-~~~~~d~~k~~r~~~lh~~~ 287 (1008)
T TIGR01408 210 MTGLNDGSPRKITVISPYSFSI-GDTTELGPYLHGGIATQVKTPKTVFFKSLREQLKDP-KCLIVDFSKPERPPEIHTAF 287 (1008)
T ss_pred ccccCCCCceeEEecCCceEEe-ccccccchhhcCceEEEEeccccccccCHHHHHcCC-cccccchhhcCCchhHHHHH
Confidence 8999999999999999999999 999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhhhccccchhHHHhhhhhhhhhhhccc
Q 003714 81 QALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACS 160 (800)
Q Consensus 81 ~aL~~F~~~~gr~P~~~~~~D~~~l~~i~~~i~~~~~~~~~~~l~~~~i~~~~~~~~~el~PvaA~iGGi~aQEviK~it 160 (800)
+||++|+++|||+|.+++++|++++++++++++++.+. ..+++++++++.|+++++++++||||++||++||||||+||
T Consensus 288 ~aL~~f~~~~g~~P~~~~~~d~~~~~~~a~~i~~~~~~-~~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKais 366 (1008)
T TIGR01408 288 QALDQFQEKYSRKPNVGCQQDAEELLKLATSISETLEE-KVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVT 366 (1008)
T ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhcCC-CcccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhc
Confidence 99999999999999999999999999999999987643 23569999999999999999999999999999999999999
Q ss_pred CccccccceeeecccCCCCCC-CCCccCCCCccCcchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccC
Q 003714 161 GKFHPLYQFFYFDSVESLPTE-PLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCG 239 (800)
Q Consensus 161 ~k~~Pi~q~~~fd~~~~l~~~-~l~~~~~~~~~~RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~ 239 (800)
|||+||+||||||++++||+. .+.++++.+.++|||||+++||.++|++|++++|+||||||+|||++||||++||+||
T Consensus 367 gKf~Pi~q~~~~D~~e~l~~~~~~~~~~~~~~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~ 446 (1008)
T TIGR01408 367 GKFSPLCQWFYFDSAESLPSLGKPECEEFLPRGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTG 446 (1008)
T ss_pred CCCCCceeeEEeehhhhCCcccCcchhhccchhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcC
Confidence 999999999999999999975 4455577789999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEcc
Q 003714 240 NQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINAL 319 (800)
Q Consensus 240 ~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~ 319 (800)
+.|+|+|+|+|+||.|||||||||+.+|||++||++|+++++++||+++|+++..+++++++++++++||+++|+|++|+
T Consensus 447 ~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~al 526 (1008)
T TIGR01408 447 KKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINAL 526 (1008)
T ss_pred CCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999998778888889999999999999
Q ss_pred CCHHHHHHHhhhcccccccEEEecccCcccceEEEeCCcccccCCCCCCCCCCCCCccccCCCCCchhHHHHHHHHhhhh
Q 003714 320 DNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGL 399 (800)
Q Consensus 320 Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v~~~ip~~t~~y~~~~~~~~~~~p~ctl~~fP~~~~h~i~wA~~~F~~~ 399 (800)
||+++|++++++|+.+++|+|++|+.|++|++++++|++|+||+|+++|+++++|+|||++||+.++|||+|||++|+++
T Consensus 527 Dn~~aR~~vn~~c~~~~iPli~~gt~G~~G~v~v~ip~~te~y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~ 606 (1008)
T TIGR01408 527 DNVEARRYVDSRCLAFLKPLLESGTLGTKGNTQVVVPHLTESYGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGL 606 (1008)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccCceeeEEEEeCCCcCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccChhHHhhhcCCchhHhhhhhhcCchhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhCCcccc
Q 003714 400 LEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAA 479 (800)
Q Consensus 400 F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~c~~~A~~~f~~~F~~~I~~ll~~~p~d~~ 479 (800)
|+..++++|+|+++|..|.+.+...+..+..+.|+.+++.|...+|.+|++|++|||.+|+++|+++|+|||++||+|++
T Consensus 607 F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~p~~~~~cv~~a~~~f~~~F~~~I~qLl~~fP~d~~ 686 (1008)
T TIGR01408 607 FSHKPSLVNKYLSSPSSAEEVLQKIQSGHSREGLEQIIKLLSKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIR 686 (1008)
T ss_pred HHhhHHHHHHHhhChHHHHHHHHhcCchhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 99999999999999999998888877777778999999999889999999999999999999999999999999999999
Q ss_pred ccCCCCCccCCCCCCCccccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHhhhcCCCCcCCCCCccccccc
Q 003714 480 TSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDE 559 (800)
Q Consensus 480 ~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~e 559 (800)
|++|+|||+||||+|+||+||.+|++|++||.++|+|||.+|||+.+..+.+.+.+.++++++.+|+|+|++++++..+|
T Consensus 687 ~~~G~~fWs~~kr~P~pl~Fd~~~~~h~~Fi~aaanL~A~~ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~~~i~~~~ 766 (1008)
T TIGR01408 687 TSTGSPFWSSPKRPPSPLKFDLNEPLHLSFIQAAAKLYATVYGIPFAEEDLSADALLNILSEVKIPEFKPRSNKKIQTDE 766 (1008)
T ss_pred ccCCCccccCCCCCCCceeeCCCCHHHHHHHHHHHHHHHHHhCCCCccccchHHHHHHHHhcCCCCCCCCCcCceeecCh
Confidence 99999999999999999999999999999999999999999999987544555899999999999999999999999998
Q ss_pred ccccccccccccHHHHHHHHHHHHHhhhcCCCCCCcCCceecccCCCCchhHHHHHhhhhhhhccCCCCCCHHHHHHHhC
Q 003714 560 KATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAG 639 (800)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~FeKDDd~n~hidFV~AasNLRa~ny~I~~~~~~~~k~iAG 639 (800)
++.+.+....++.+.++.+..+|...... ..+.++.|++||||||+|+|||||+|||||||+||+||++|||++|+|||
T Consensus 767 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~p~~FeKDDd~n~HidFI~AasNLRA~nY~I~~~d~~~~K~iAG 845 (1008)
T TIGR01408 767 TARKPDTAPEDDRNAIFQLEKAILSNEAT-KSDFRMAPLSFEKDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAG 845 (1008)
T ss_pred hhhcccccccchHHHHHHHHHHhhccccc-cCCCCCCceeeccCCCcchHHHHHHHHHhhHHHhcCCCcccHHHHHHHhc
Confidence 87655433334566778888887765542 12367999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhHHHHHHHHHHHHHHHhhCCCCccccccccccccccccccCCCCCCcccccCCCcc-eEEEEEEeCCCCCHH
Q 003714 640 RIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSW-TVWDRWILKDNPTLR 718 (800)
Q Consensus 640 ~IIPAIaTTtA~VaGl~~lEl~K~l~~~~~~~~~rn~f~nla~p~~~~~eP~~~~~~~~~~~~~-t~wd~~~v~~~~TL~ 718 (800)
|||||||||||+||||||||+||++++..+++.|||+|+|||+|++.|+||.||++.++.+..| |+||||++.+++||+
T Consensus 846 ~IIPAiATTTA~vaGLv~lEl~Kv~~~~~~i~~~kn~f~nlalp~~~~seP~~~~~~~~~~~~~~t~WDr~~i~~~~Tl~ 925 (1008)
T TIGR01408 846 KIIPAIATSTATVSGLVCLELIKVTDGGYKFEVYKNCFLNLAIPLFVFTEPTEVRKTKIRNGISFTIWDRWTLHGDFTLL 925 (1008)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHhccccHHHHhHHHHhhccccccccCCCCCCceeecCceeccceEEEEecCCCcHH
Confidence 9999999999999999999999999987789999999999999999999999999999888899 999999998899999
Q ss_pred HHHHHHHHc-CCceeeeecCCceeecCCCcchhhcccCcHHHHHHhhhccCCCCceeEEEEEEEeecCCCCccccCeEEE
Q 003714 719 ELIQWLKDK-GLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISI 797 (800)
Q Consensus 719 ~li~~~~~~-~l~~~~i~~g~~~lY~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~d~~~~~v~~P~v~~ 797 (800)
+|+++|+++ |+++.||+.|+++||++|++++++||+++|+||+++++|+++|++++||+|+++|+|+|++||++|+|+|
T Consensus 926 ~~i~~~~~~~~~~v~~is~g~~~lY~~~~~~~~erl~~~l~el~~~~~k~~~~~~~~~l~~~~~~~d~~~~dv~~P~v~~ 1005 (1008)
T TIGR01408 926 EFINAVKEKYGLEPTMVSQGVKLLYVPVMPGHAERLKLKMHKLVKPTTKKKLPPYRVHLTVSFACDDDGDEDVPGPPVRI 1005 (1008)
T ss_pred HHHHHHHHHhCCeeEEEEcCceEEEeccchhhHHhcCCCHHHHHHHhccCCCCCCceEEEEEEEeecCCCCcccCCeEEE
Confidence 999999999 9999999999999999999888999999999999999999999999999999999999989999999999
Q ss_pred EeC
Q 003714 798 YFR 800 (800)
Q Consensus 798 ~~~ 800 (800)
+||
T Consensus 1006 ~~~ 1008 (1008)
T TIGR01408 1006 YFS 1008 (1008)
T ss_pred EeC
Confidence 986
No 3
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=6.3e-122 Score=1021.56 Aligned_cols=430 Identities=61% Similarity=1.083 Sum_probs=413.1
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEEe
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 293 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~ 293 (800)
||+||||||+|||++|+||++||++|+.|+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEEEeCCcccccCCCCCCCCCCC
Q 003714 294 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 373 (800)
Q Consensus 294 ~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v~~~ip~~t~~y~~~~~~~~~~~ 373 (800)
.+++++++++++++||+++|+||+|+||+++|++++++|+.+++|+|++|+.|++|++++++|+.|+||+|+.+|+++++
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p~~~~~ 160 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSI 160 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCCCCCCCC
Confidence 99998888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCchhHHHHHHHHhhhhhccChhHHhhhcCCchhHhhhhhhcCchhHHHHHHHHHHHhhhhcccchhhHHH
Q 003714 374 PMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCIT 453 (800)
Q Consensus 374 p~ctl~~fP~~~~h~i~wA~~~F~~~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~c~~ 453 (800)
|+||+++||+.++|||+|||++|+++|+..++++|+|+ |++|++
T Consensus 161 P~Ctl~~~P~~~eHcI~wA~~~F~~lF~~~~~~~~~~~------------------------------------~~~c~~ 204 (435)
T cd01490 161 PLCTLKNFPNAIEHTIQWARDEFEGLFKQPPENVNQYL------------------------------------FEDCVR 204 (435)
T ss_pred CCccccCCCCCchHHHHHHHHHHHHHhccchHHHHHhh------------------------------------HHHHHH
Confidence 99999999999999999999999999998877665542 678999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHH
Q 003714 454 WARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPK 533 (800)
Q Consensus 454 ~A~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~ 533 (800)
||+.+|+++|+++|+|||++||+|+++++|++||+|+||+|+|++||.+|+.|+.||.++|+|+|++||++
T Consensus 205 ~a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~--------- 275 (435)
T cd01490 205 WARLLFEKYFNNNIKQLLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDFVLAAANLYAEVYGIP--------- 275 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998862
Q ss_pred HHHHHhhhcCCCCcCCCCCcccccccccccccccccccHHHHHHHHHHHHHhhhcCCCCCCcCCceecccCCCCchhHHH
Q 003714 534 MLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMI 613 (800)
Q Consensus 534 ~~~~~~~~~~~~~f~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~FeKDDd~n~hidFV 613 (800)
.||||||+|+|||||
T Consensus 276 -----------------------------------------------------------------~FeKDdd~n~h~~fi 290 (435)
T cd01490 276 -----------------------------------------------------------------GFEKDDDTNFHMDFI 290 (435)
T ss_pred -----------------------------------------------------------------ccccCCchhHHHHHH
Confidence 099999999999999
Q ss_pred HHhhhhhhhccCCCCCCHHHHHHHhCCccchhhhhHHHHHHHHHHHHHHHhhCCCCccccccccccccccccccCCCCCC
Q 003714 614 AGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPP 693 (800)
Q Consensus 614 ~AasNLRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~VaGl~~lEl~K~l~~~~~~~~~rn~f~nla~p~~~~~eP~~~ 693 (800)
+|||||||+||+|+++||+++|+|||||||||||||||||||+|+|+||++++..+++.|||+|+|||+|++.++||.+|
T Consensus 291 ~a~snlRa~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~~~~~~~~~~~~n~~~nla~p~~~~~~p~~~ 370 (435)
T cd01490 291 TAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVVDGKRPLEAYKNAFLNLALPFFAFSEPIPA 370 (435)
T ss_pred HHhhhhHHHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHhCCccHHHcchHhhhccCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999778999999999999999999999999
Q ss_pred ccccc-CCCcceEEEEEEeCCCCCHHHHH-HHHHHc-CCceeeeecCCceeecCCCcc--hhhcc
Q 003714 694 KVIKH-RDMSWTVWDRWILKDNPTLRELI-QWLKDK-GLNAYSISCGSCLLFNSMFPR--HKERM 753 (800)
Q Consensus 694 ~~~~~-~~~~~t~wd~~~v~~~~TL~~li-~~~~~~-~l~~~~i~~g~~~lY~~~~~~--~~~~l 753 (800)
++.++ .+.+||+||||+|++++||++|+ ++|+++ |+++.||++|+++||++|||. +++||
T Consensus 371 ~~~~~~~~~~~t~Wdr~~v~~~~t~~~~~~~~~~~~~~~~v~~i~~g~~~ly~~~~~~~~~~~r~ 435 (435)
T cd01490 371 PKVKYAYDEEWTIWDRFEVKGKQTLQELLIDYFKEKYGLEVTMLSQGVSMLYSSFMPPAKLKERL 435 (435)
T ss_pred CccccCCCCEEeeEeEEEEcCCCcHHHHHHHHHHHHhCCeEEEEEeCCeEEEeecCCchhhhhcC
Confidence 99887 77889999999999999999999 999999 999999999999999999873 34553
No 4
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-84 Score=692.76 Aligned_cols=476 Identities=29% Similarity=0.453 Sum_probs=347.5
Q ss_pred HHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhC
Q 003714 205 KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSIN 284 (800)
Q Consensus 205 ~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~n 284 (800)
+.++++.++|||||||||||||+||+||++|+ ++|+|||.|+|++|||||||||+++|||++||.||++.++++|
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf-----~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fn 79 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGF-----EEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFN 79 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcC-----CeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhC
Confidence 56788999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEEEeCCcccccCC
Q 003714 285 PRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGA 364 (800)
Q Consensus 285 p~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v~~~ip~~t~~y~~ 364 (800)
|++++.+++..|.+. -|+.+||++||+|++|+||..||+|+|++|..+++|||+||+.|+.||+++++++.||||+|
T Consensus 80 pn~~l~~yhanI~e~---~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC 156 (603)
T KOG2013|consen 80 PNIKLVPYHANIKEP---KFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYEC 156 (603)
T ss_pred CCCceEeccccccCc---chHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecc
Confidence 999999999988754 36678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccCCCCCchhHHHHHHH-HhhhhhccChhHH--hhhcCCchhHhhhhhh-cCchhHHHHHHHHHHHh
Q 003714 365 SRDPPEKQAPMCTVHSFPHNIDHCLTWARS-EFEGLLEKTPAEV--NAYLSNPVEYTTSMAN-AGDAQARDNLERVLECL 440 (800)
Q Consensus 365 ~~~~~~~~~p~ctl~~fP~~~~h~i~wA~~-~F~~~F~~~~~~~--~~~l~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l 440 (800)
.++|.++++|+||+|+.|..++|||+|||+ +|.++|+.....- +-.-.+|+.-.....+ +......+.+...+..
T Consensus 157 ~pK~~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er~~~- 235 (603)
T KOG2013|consen 157 IPKPVPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKERRES- 235 (603)
T ss_pred cCCCCCCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccchHHHHHHHH-
Confidence 999999999999999999999999999996 6999998743321 0011122221111100 0000000111111111
Q ss_pred hhhcccchhhHHHHH-------HHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccCCCCCchhHHHHHH
Q 003714 441 DKEKCEIFQDCITWA-------RLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAA 513 (800)
Q Consensus 441 ~~~~~~~~~~c~~~A-------~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~ 513 (800)
.++|. ..+|.++|.++|+.|+. ++..|.. +++|.||+|...-+...
T Consensus 236 ----------i~~~~~~~~~~~~~i~~klF~~dI~yl~~----------~e~~wk~-r~~p~pl~~~~~i~~~~------ 288 (603)
T KOG2013|consen 236 ----------IVEIDKNLDFGPFKIFNKLFIYDIEYLLG----------MEALWKP-RSRPVPLSIAEVISTSL------ 288 (603)
T ss_pred ----------HHHHhhccCCChhhhhhHHHHHHHHHHHh----------hhhhccC-CCCCCCcchhhccCCcc------
Confidence 12222 45899999999999996 5778995 77899999875422111
Q ss_pred HHHHHHHcCCCCCCCCCCHHHHHHHhhhcCCCCcCCCCCcccccccccccccccccccHHHHHHHHHHHHHhhhcCCCCC
Q 003714 514 SILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGF 593 (800)
Q Consensus 514 a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 593 (800)
+ .+..+.+.+ +. +.. .+.+.|...+. ...+...++.|..... ...
T Consensus 289 ----------~---------t~ns~~q~~--~~--a~~-----~~~~v~~v~~~----~~vf~~~i~~l~~~~~---~~~ 333 (603)
T KOG2013|consen 289 ----------E---------TINSIVQSI--TS--AQL-----NDQNVWTVDEG----AVVFRLSIQALDLRCP---KES 333 (603)
T ss_pred ----------c---------cccchhhhc--cc--ccc-----CCcceeeeccc----cHHHHHHHHHhcccCC---ccC
Confidence 0 000011100 00 000 01122222111 1122222333311111 111
Q ss_pred CcCCceecccCCCCchhHHHHHhhhhhhhccCCCCCCHHHHHHHhCCccchhhhhHHHHHHHHHHHHHHHhhCCCCcccc
Q 003714 594 RLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDY 673 (800)
Q Consensus 594 ~~~~~~FeKDDd~n~hidFV~AasNLRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~VaGl~~lEl~K~l~~~~~~~~~ 673 (800)
.---+.|||||.+ .|+||+||||+||+.|+||..+.|++|.||||||||||||||+|||++|+|.+|+|++ ++..+
T Consensus 334 ~h~~l~fdKdd~~--~~~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtTNAiIagliv~eaiKvl~~--~~~~~ 409 (603)
T KOG2013|consen 334 DHWYLIFDKDDAS--TMEFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTEAIKVLGG--DFDDC 409 (603)
T ss_pred CCceEEEcCCcHH--HHHHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhhhhHHHHHHHHHHHHHhcc--chhcc
Confidence 1223789999988 8999999999999999999999999999999999999999999999999999999976 47889
Q ss_pred cccccccccc----ccccCCCCCCcccccCCCcceEEEEEEeC-CCCCHHHHHHHH-HHc-CCceeeeec-CCceeecCC
Q 003714 674 RNTFANLALP----LFSMAEPVPPKVIKHRDMSWTVWDRWILK-DNPTLRELIQWL-KDK-GLNAYSISC-GSCLLFNSM 745 (800)
Q Consensus 674 rn~f~nla~p----~~~~~eP~~~~~~~~~~~~~t~wd~~~v~-~~~TL~~li~~~-~~~-~l~~~~i~~-g~~~lY~~~ 745 (800)
+++|++-+.. ......+.||.+.|+.+.+.. -.+.+. ..+||.+|+|.+ +.+ ++ .+.++. ...++|+
T Consensus 410 ~~~f~~~~~n~r~r~l~~~~~~~PNp~C~vCs~~~--~~l~ln~~~~~~~~L~D~ivk~r~~~-~pdvsll~~~Li~~-- 484 (603)
T KOG2013|consen 410 NMIFLAKRPNPRKRVLLPWALRPPNPNCPVCSEVP--LVLELNTRKSTLRDLVDKIVKTRLGY-LPDVSLLDDDLIDD-- 484 (603)
T ss_pred eeeEEccCCCccceeecccccCCCCCCCccccccc--eEEEeccccchHHHHHHHHHHHHhcc-Ccccchhhhhhccc--
Confidence 9999864433 222233344444444333222 234453 489999999975 555 77 444432 2345555
Q ss_pred CcchhhcccCcHHHHH
Q 003714 746 FPRHKERMDKKVVDLA 761 (800)
Q Consensus 746 ~~~~~~~l~~~l~~l~ 761 (800)
++.+++++|+|+||.
T Consensus 485 -~d~e~n~~k~lsel~ 499 (603)
T KOG2013|consen 485 -MDFEDNLDKTLSELG 499 (603)
T ss_pred -ccchhhhhhhHHhhC
Confidence 478899999999994
No 5
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=9.3e-78 Score=646.36 Aligned_cols=306 Identities=39% Similarity=0.651 Sum_probs=283.0
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEEe
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 293 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~ 293 (800)
||+||||||+|||++||||++|| |+|+|+|+|+||.|||+|||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-----g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~ 75 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-----GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYH 75 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-----CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEEEeCCcccccCCCCCCCCCCC
Q 003714 294 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 373 (800)
Q Consensus 294 ~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v~~~ip~~t~~y~~~~~~~~~~~ 373 (800)
.++.+. .++.+|++++|+||+|+||.++|++++++|+.+++|+|++|+.|+.|++++++|+.|+||+|..+++++++
T Consensus 76 ~~i~~~---~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~ 152 (312)
T cd01489 76 ANIKDP---DFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTF 152 (312)
T ss_pred ccCCCc---cchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcC
Confidence 888753 34568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCchhHHHHHHHHhhhhhccChhHHhhhcCCchhHhhhhhhcCchhHHHHHHHHHHHhhhhcccchhhHHH
Q 003714 374 PMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCIT 453 (800)
Q Consensus 374 p~ctl~~fP~~~~h~i~wA~~~F~~~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~c~~ 453 (800)
|+||++++|+.++|||+|||++|+
T Consensus 153 pictI~~~p~~~~hci~~a~~~f~-------------------------------------------------------- 176 (312)
T cd01489 153 PVCTIRSTPSQPIHCIVWAKSLFF-------------------------------------------------------- 176 (312)
T ss_pred CcceecCCCCCCEeehhHHHHHHH--------------------------------------------------------
Confidence 999999999999999999999874
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHH
Q 003714 454 WARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPK 533 (800)
Q Consensus 454 ~A~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~ 533 (800)
+|+++|+++|++|+++ ++||+++| +|+|++|+.
T Consensus 177 ----~~~~~f~~~i~~l~~~----------~~~w~~~~-~p~p~~~~~-------------------------------- 209 (312)
T cd01489 177 ----LFNKVFKDDIERLLSM----------EELWKTRK-PPVPLSWKE-------------------------------- 209 (312)
T ss_pred ----HHHHHHHHHHHHHHhh----------hhhhcCCC-CCCCCCCCC--------------------------------
Confidence 5889999999999974 78999976 999997652
Q ss_pred HHHHHhhhcCCCCcCCCCCcccccccccccccccccccHHHHHHHHHHHHHhhhcCCCCCCcCCceecccCCCCchhHHH
Q 003714 534 MLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMI 613 (800)
Q Consensus 534 ~~~~~~~~~~~~~f~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~FeKDDd~n~hidFV 613 (800)
++|||||++ ||+||
T Consensus 210 ----------------------------------------------------------------~~fdkDd~~--~~~~v 223 (312)
T cd01489 210 ----------------------------------------------------------------LTFDKDDQD--ALDFV 223 (312)
T ss_pred ----------------------------------------------------------------cCcCCCCHH--HHHHH
Confidence 249999998 99999
Q ss_pred HHhhhhhhhccCCCCCCHHHHHHHhCCccchhhhhHHHHHHHHHHHHHHHhhCCCCcccccccccccccc----ccccCC
Q 003714 614 AGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALP----LFSMAE 689 (800)
Q Consensus 614 ~AasNLRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~VaGl~~lEl~K~l~~~~~~~~~rn~f~nla~p----~~~~~e 689 (800)
+|+|||||+||+||..|++++|+|||||||||||||||||||+++|++|++++. .+.||++|+|+..+ ++...+
T Consensus 224 ~~~a~lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 301 (312)
T cd01489 224 AAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGD--KEQCRTVFLNLQPNRRKRLLVPCK 301 (312)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhh--HHHhhhHhhhcccCCCCcEecCCC
Confidence 999999999999999999999999999999999999999999999999999974 68999999997533 456667
Q ss_pred CCCCccccc
Q 003714 690 PVPPKVIKH 698 (800)
Q Consensus 690 P~~~~~~~~ 698 (800)
|.+|.+.|+
T Consensus 302 ~~~~n~~c~ 310 (312)
T cd01489 302 LDPPNPNCY 310 (312)
T ss_pred CCCcCCCCC
Confidence 777766554
No 6
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=2.1e-64 Score=524.37 Aligned_cols=176 Identities=48% Similarity=0.833 Sum_probs=168.2
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEEe
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 293 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~ 293 (800)
||+|||+||+|||++|+|+++|| |+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv-----g~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~ 75 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF-----GQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQ 75 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEEEeCCcccccCCCCCCCCCCC
Q 003714 294 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 373 (800)
Q Consensus 294 ~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v~~~ip~~t~~y~~~~~~~~~~~ 373 (800)
.++.++ ..++++|++++|+||+|+||+++|++++++|+.+++|+|++|+.|++|++++++|+.|+||.|..+|+++++
T Consensus 76 ~~i~~~--~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~ 153 (234)
T cd01484 76 NKVGPE--QDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNF 153 (234)
T ss_pred ccCChh--hhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCC
Confidence 988643 335678999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred CCccccCCCCCchhHHHHHHHHh
Q 003714 374 PMCTVHSFPHNIDHCLTWARSEF 396 (800)
Q Consensus 374 p~ctl~~fP~~~~h~i~wA~~~F 396 (800)
|.||+++||+.++|||+||+++|
T Consensus 154 p~Cti~~~P~~~~hci~~a~~~~ 176 (234)
T cd01484 154 PMCTIASMPRLPEHCIEWARMLQ 176 (234)
T ss_pred CccccCCCCCCchHHHHHHHHHH
Confidence 99999999999999999999853
No 7
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=2e-59 Score=499.23 Aligned_cols=249 Identities=32% Similarity=0.592 Sum_probs=226.4
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEEe
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 293 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~ 293 (800)
||+||||||+|||++|+||++|| |+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv-----g~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~ 75 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF-----RNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHF 75 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccc--------cccEEEecccCcccceEEEeCCcccccCCC
Q 003714 294 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF--------QKPLLESGTLGAKCNTQMVIPHLTENYGAS 365 (800)
Q Consensus 294 ~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~--------~~pli~sgt~G~~G~v~~~ip~~t~~y~~~ 365 (800)
.++.+ ++++|++++|+||+|+||+++|+++++.|... ++|+|++|+.|+.|++++++|+.|+||+|.
T Consensus 76 ~~i~~-----~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~ 150 (291)
T cd01488 76 GKIQD-----KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECS 150 (291)
T ss_pred cccCc-----hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccC
Confidence 88864 24689999999999999999999999998654 599999999999999999999999999998
Q ss_pred CC--CCCCCCCCccccCCCCCchhHHHHHHHHhhhhhccChhHHhhhcCCchhHhhhhhhcCchhHHHHHHHHHHHhhhh
Q 003714 366 RD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKE 443 (800)
Q Consensus 366 ~~--~~~~~~p~ctl~~fP~~~~h~i~wA~~~F~~~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 443 (800)
.+ |+++++|+||+++||+.++|||+||+...
T Consensus 151 ~d~~p~~~~~p~Cti~~~P~~~~hci~~a~~~~----------------------------------------------- 183 (291)
T cd01488 151 LDLFPPQVTFPLCTIANTPRLPEHCIEYASLIQ----------------------------------------------- 183 (291)
T ss_pred CCCCCCCCCCCcccccCCCCCcchheeeeeeee-----------------------------------------------
Confidence 76 67778999999999999999999988730
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccCCCCCchhHHHHHHHHHHHHHcCC
Q 003714 444 KCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGI 523 (800)
Q Consensus 444 ~~~~~~~c~~~A~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i 523 (800)
|+..+ |.
T Consensus 184 -------------------------------------------~~~~~--~~---------------------------- 190 (291)
T cd01488 184 -------------------------------------------WPKEF--PF---------------------------- 190 (291)
T ss_pred -------------------------------------------ccccc--CC----------------------------
Confidence 11100 00
Q ss_pred CCCCCCCCHHHHHHHhhhcCCCCcCCCCCcccccccccccccccccccHHHHHHHHHHHHHhhhcCCCCCCcCCceeccc
Q 003714 524 PIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKD 603 (800)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~FeKD 603 (800)
..||+|
T Consensus 191 --------------------------------------------------------------------------~~~~~d 196 (291)
T cd01488 191 --------------------------------------------------------------------------VPLDGD 196 (291)
T ss_pred --------------------------------------------------------------------------CcCCCC
Confidence 126677
Q ss_pred CCCCchhHHHHHhhhhhhhccCCCCCCHHHHHHHhCCccchhhhhHHHHHHHHHHHHHHHhhCCC
Q 003714 604 DDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGH 668 (800)
Q Consensus 604 Dd~n~hidFV~AasNLRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~VaGl~~lEl~K~l~~~~ 668 (800)
|+. ||+||+..|+.||.+|+|+..+++.+++++||||||||||||||||+++.|++|++++..
T Consensus 197 ~~~--~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~ 259 (291)
T cd01488 197 DPE--HIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCY 259 (291)
T ss_pred CHH--HHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccc
Confidence 766 999999999999999999999999999999999999999999999999999999999753
No 8
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-59 Score=479.35 Aligned_cols=345 Identities=26% Similarity=0.480 Sum_probs=278.8
Q ss_pred CHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHh
Q 003714 203 GAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATS 282 (800)
Q Consensus 203 G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~ 282 (800)
+.+..+.|.+.+|+|+||||+|||++||||++|+ +.+++||||+||.|||||||||+++|||++||++||+.+.+
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF-----~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~ 105 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGF-----RQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNR 105 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhcc-----ceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHh
Confidence 4677889999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccc---c-------ccEEEecccCcccceE
Q 003714 283 INPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF---Q-------KPLLESGTLGAKCNTQ 352 (800)
Q Consensus 283 ~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~---~-------~pli~sgt~G~~G~v~ 352 (800)
..|...|.+|..++.+ ++.+|+++|++||+++|++++|+++|.+.+.. | +|+|++|+.|++|+++
T Consensus 106 Rvp~~~v~~h~~kIqd-----~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~ar 180 (422)
T KOG2015|consen 106 RVPGCVVVPHRQKIQD-----KPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHAR 180 (422)
T ss_pred hCCCcEEeeeecchhc-----CCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeE
Confidence 9999999999998875 34689999999999999999999999766432 3 6999999999999999
Q ss_pred EEeCCcccccCCCCC--CCCCCCCCccccCCCCCchhHHHHHHHHhhhhhccChhHHhhhcCCchhHhhhhhhcCchhHH
Q 003714 353 MVIPHLTENYGASRD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQAR 430 (800)
Q Consensus 353 ~~ip~~t~~y~~~~~--~~~~~~p~ctl~~fP~~~~h~i~wA~~~F~~~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 430 (800)
+++|+.|.|+.|+.| |++.++|+||+.+.|..++|||+|++-.
T Consensus 181 vI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~li----------------------------------- 225 (422)
T KOG2015|consen 181 VIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLI----------------------------------- 225 (422)
T ss_pred EEecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhh-----------------------------------
Confidence 999999999999876 7777899999999999999999986541
Q ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccCCCCCchhHHH
Q 003714 431 DNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFV 510 (800)
Q Consensus 431 ~~l~~~~~~l~~~~~~~~~~c~~~A~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi 510 (800)
+|-+ -.|--..
T Consensus 226 ----------------------qwpe-----------------------------------~~~~g~~------------ 236 (422)
T KOG2015|consen 226 ----------------------QWPE-----------------------------------LNPFGVP------------ 236 (422)
T ss_pred ----------------------cchh-----------------------------------hCccCCC------------
Confidence 2211 0110011
Q ss_pred HHHHHHHHHHcCCCCCCCCCCHHHHHHHhhhcCCCCcCCCCCcccccccccccccccccccHHHHHHHHHHHHHhhhcCC
Q 003714 511 MAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLP 590 (800)
Q Consensus 511 ~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 590 (800)
T Consensus 237 -------------------------------------------------------------------------------- 236 (422)
T KOG2015|consen 237 -------------------------------------------------------------------------------- 236 (422)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCceecccCCCCchhHHHHHhhhhhhhccCCCCCCHHHHHHHhCCccchhhhhHHHHHHHHHHHHHHHhhCCCCc
Q 003714 591 SGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKL 670 (800)
Q Consensus 591 ~~~~~~~~~FeKDDd~n~hidFV~AasNLRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~VaGl~~lEl~K~l~~~~~~ 670 (800)
++-||.. ||+||.--+|.||.-|+|+..+++.+.++..+||||+|||||+||+.++.|++|++...
T Consensus 237 ---------~~gdd~~--hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~--- 302 (422)
T KOG2015|consen 237 ---------LDGDDPE--HIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTAT--- 302 (422)
T ss_pred ---------CCCCCHH--HHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhc---
Confidence 2223332 88888888899999999999999999999999999999999999999999999999863
Q ss_pred cccccccccc----ccccccc-CCCCCCcccccCCCcceEEEEEEeCCCCCHHHHHHHHHHc-CCceeeeecCC-ceeec
Q 003714 671 EDYRNTFANL----ALPLFSM-AEPVPPKVIKHRDMSWTVWDRWILKDNPTLRELIQWLKDK-GLNAYSISCGS-CLLFN 743 (800)
Q Consensus 671 ~~~rn~f~nl----a~p~~~~-~eP~~~~~~~~~~~~~t~wd~~~v~~~~TL~~li~~~~~~-~l~~~~i~~g~-~~lY~ 743 (800)
..|-+-|+|. ++-.+.| .|-.+.+..|-.. -..+++....||+++++++.+. ++..+.++... ..||.
T Consensus 303 ~~~~~Nym~~n~~eG~ytytf~~er~~nC~vCS~~-----~~~~~ispt~tl~~vl~~ls~~~~lk~p~~tt~~~~~ly~ 377 (422)
T KOG2015|consen 303 DDPLDNYMNYNAEEGIYTYTFLLERDKNCPVCSNL-----VQNYDISPTVTLEDVLNHLSKSFQLKSPALTTAAGRTLYL 377 (422)
T ss_pred chhhhhheeeecccceeEEEeeeccCCCCccccCC-----CcccccCCcccHHHHHHHhhhhhccCCchhhhhhcceEee
Confidence 3344444432 1112221 1111222222111 1224455678999999999988 99988886432 68999
Q ss_pred CCCc----chhhcccCcHHHH
Q 003714 744 SMFP----RHKERMDKKVVDL 760 (800)
Q Consensus 744 ~~~~----~~~~~l~~~l~~l 760 (800)
+++| ..++||.++|.||
T Consensus 378 ~~~~~~e~~t~~nl~~~l~~l 398 (422)
T KOG2015|consen 378 SSVPSIEEATRKNLSQSLKEL 398 (422)
T ss_pred cCCcHHHHHhhhhhhhhHHHh
Confidence 9988 3478999999999
No 9
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=3.2e-37 Score=326.82 Aligned_cols=182 Identities=27% Similarity=0.375 Sum_probs=166.4
Q ss_pred ccCcchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccc
Q 003714 191 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 270 (800)
Q Consensus 191 ~~~RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~ 270 (800)
..+||+||+.++|.++|++|++++|+||||||+||+++++||++|| |+|+|+|.|+||.||||||++++.+|||+
T Consensus 6 ~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGV-----G~i~lvD~D~Ve~SNLnRQ~l~~~~diG~ 80 (287)
T PRK08223 6 YDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGI-----GKFTIADFDVFELRNFNRQAGAMMSTLGR 80 (287)
T ss_pred HHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCC-----CeEEEEeCCCcchhccccccCcChhHCCC
Confidence 3589999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCH--HHHHHHhhhcccccccEEEecccCcc
Q 003714 271 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNV--NARLYVDQRCLYFQKPLLESGTLGAK 348 (800)
Q Consensus 271 ~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~--~ar~~l~~~c~~~~~pli~sgt~G~~ 348 (800)
+|+++++++++++||.++|+++...+++++. +++++++|+||||+||+ ++|.++++.|+.+++|+|.+++.|+.
T Consensus 81 ~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~----~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~ 156 (287)
T PRK08223 81 PKAEVLAEMVRDINPELEIRAFPEGIGKENA----DAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMG 156 (287)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEecccCccCH----HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCe
Confidence 9999999999999999999999999886543 46789999999999986 89999999999999999999999999
Q ss_pred cceEEEeCCcccccCCC-CC---CCC---------CCCCCccccCCC
Q 003714 349 CNTQMVIPHLTENYGAS-RD---PPE---------KQAPMCTVHSFP 382 (800)
Q Consensus 349 G~v~~~ip~~t~~y~~~-~~---~~~---------~~~p~ctl~~fP 382 (800)
|++.++.|+ +.||.|. +. |++ ...|.|.-..+.
T Consensus 157 gqv~v~~p~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl 202 (287)
T PRK08223 157 TALLVFDPG-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYL 202 (287)
T ss_pred EEEEEEcCC-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCcc
Confidence 999999997 8999993 32 333 356788776666
No 10
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=3.8e-37 Score=315.31 Aligned_cols=176 Identities=28% Similarity=0.492 Sum_probs=161.2
Q ss_pred cchhhhhc--cCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCccccc
Q 003714 194 RYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 271 (800)
Q Consensus 194 RYdrqi~l--~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~ 271 (800)
||+||+++ ||.+.|++|++++|+|||+||+||+++++|+++|+ |+|+|+|.|.|+.+||+|||||+++|||++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv-----~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~ 75 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGV-----GTIVIVDDDHVDLSNLQRQILFTEEDVGRP 75 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEecCCEEcccchhhhhccChhhCCCh
Confidence 89999999 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccce
Q 003714 272 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 351 (800)
Q Consensus 272 Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v 351 (800)
||++++++++++||+++++.+...+.+++ + +++++++|+||+|+||.++|.++++.|+.+++|+|.+++.|+.|++
T Consensus 76 Ka~~~~~~l~~~np~v~i~~~~~~i~~~~--~--~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~ 151 (202)
T TIGR02356 76 KVEVAAQRLRELNSDIQVTALKERVTAEN--L--ELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQL 151 (202)
T ss_pred HHHHHHHHHHHhCCCCEEEEehhcCCHHH--H--HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEE
Confidence 99999999999999999999988776432 1 3578999999999999999999999999999999999999999999
Q ss_pred EEEeCC-cccccCCCCCCCCCCCCCccc
Q 003714 352 QMVIPH-LTENYGASRDPPEKQAPMCTV 378 (800)
Q Consensus 352 ~~~ip~-~t~~y~~~~~~~~~~~p~ctl 378 (800)
.++.|+ .++||.|.....+...|.|..
T Consensus 152 ~~~~p~~~~~c~~c~~~~~~~~~~~~~~ 179 (202)
T TIGR02356 152 MVFDPGGEGPCLRCLFPDIADTGPSCAT 179 (202)
T ss_pred EEEeCCCCCCChhhcCCCCcccCCCCcc
Confidence 999998 799999964333334556643
No 11
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=9.4e-37 Score=321.09 Aligned_cols=171 Identities=32% Similarity=0.488 Sum_probs=159.2
Q ss_pred CCccCCCCccCcchhhhhc--cCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcc
Q 003714 183 LDSTEFKPINSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQ 260 (800)
Q Consensus 183 l~~~~~~~~~~RYdrqi~l--~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQ 260 (800)
+++++. .||+||+++ ||.++|++|++++|+|||+||+||+++++|+++|| |+|+|+|.|.|+.|||+||
T Consensus 5 l~~~~~----~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq 75 (245)
T PRK05690 5 LSDEEM----LRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGV-----GTLTLVDFDTVSLSNLQRQ 75 (245)
T ss_pred CCHHHH----HHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEECcchhhhh
Confidence 455555 899999987 99999999999999999999999999999999999 9999999999999999999
Q ss_pred cccccCcccccHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEE
Q 003714 261 FLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLL 340 (800)
Q Consensus 261 flf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli 340 (800)
+||+++|||++|+++++++++++||+++|+++...+.++.. +++++++|+||+|+||+++|.++++.|+.+++|+|
T Consensus 76 ~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~----~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v 151 (245)
T PRK05690 76 VLHDDATIGQPKVESARAALARINPHIAIETINARLDDDEL----AALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLV 151 (245)
T ss_pred hcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCCHHHH----HHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEE
Confidence 99999999999999999999999999999999988764321 46789999999999999999999999999999999
Q ss_pred EecccCcccceEEEeCCc-ccccCCCC
Q 003714 341 ESGTLGAKCNTQMVIPHL-TENYGASR 366 (800)
Q Consensus 341 ~sgt~G~~G~v~~~ip~~-t~~y~~~~ 366 (800)
.+++.|+.|++.++.|+. ++||.|..
T Consensus 152 ~~~~~g~~G~v~~~~~~~~~~c~~c~~ 178 (245)
T PRK05690 152 SGAAIRMEGQVTVFTYQDDEPCYRCLS 178 (245)
T ss_pred EeeeccCCceEEEEecCCCCceeeecc
Confidence 999999999999999875 79999954
No 12
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=3.2e-36 Score=314.34 Aligned_cols=164 Identities=35% Similarity=0.579 Sum_probs=155.9
Q ss_pred cchhhhhc--cCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCccccc
Q 003714 194 RYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 271 (800)
Q Consensus 194 RYdrqi~l--~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~ 271 (800)
||+||+++ ||.+.|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.|+.+||+|||||+++|||++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~ 75 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGV-----GKLGLVDDDVVELSNLQRQILHTEADVGQP 75 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEEcCcccccccccChhhCCCh
Confidence 89999999 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccce
Q 003714 272 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 351 (800)
Q Consensus 272 Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v 351 (800)
||++++++++++||+++|+.+..++..+.. .++++++|+||+|+|++++|.++++.|+.+++|+|.+|+.|+.|++
T Consensus 76 Ka~~~~~~l~~~np~~~i~~~~~~i~~~~~----~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v 151 (228)
T cd00757 76 KAEAAAERLRAINPDVEIEAYNERLDAENA----EELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQV 151 (228)
T ss_pred HHHHHHHHHHHhCCCCEEEEecceeCHHHH----HHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEE
Confidence 999999999999999999999988753221 4678899999999999999999999999999999999999999999
Q ss_pred EEEeCCcccccCCCC
Q 003714 352 QMVIPHLTENYGASR 366 (800)
Q Consensus 352 ~~~ip~~t~~y~~~~ 366 (800)
.+++|+.+.||.|..
T Consensus 152 ~~~~p~~~~c~~c~~ 166 (228)
T cd00757 152 TVFIPGEGPCYRCLF 166 (228)
T ss_pred EEECCCCCCCccccC
Confidence 999999999999954
No 13
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=2.3e-36 Score=337.99 Aligned_cols=183 Identities=27% Similarity=0.466 Sum_probs=166.3
Q ss_pred CCCccCCCCccCcchhhhhc--cCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCc
Q 003714 182 PLDSTEFKPINSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSR 259 (800)
Q Consensus 182 ~l~~~~~~~~~~RYdrqi~l--~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnR 259 (800)
.+++.+. .||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|+||.|||||
T Consensus 10 ~l~~~~~----~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gv-----g~l~lvD~D~ve~sNL~R 80 (390)
T PRK07411 10 QLSKDEY----ERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGI-----GRIGIVDFDVVDSSNLQR 80 (390)
T ss_pred cCCHHHH----HHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCEecccccCc
Confidence 4566665 899999999 99999999999999999999999999999999999 999999999999999999
Q ss_pred ccccccCcccccHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccE
Q 003714 260 QFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPL 339 (800)
Q Consensus 260 Qflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pl 339 (800)
||||+++|||++||++++++++++||.++|+++..++.+++. .+++.++|+||+|+||+++|.++++.|+.+++|+
T Consensus 81 Q~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~----~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~ 156 (390)
T PRK07411 81 QVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRLSSENA----LDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPN 156 (390)
T ss_pred CcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecccCHHhH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999999999999999999998875432 4678999999999999999999999999999999
Q ss_pred EEecccCcccceEEEeCCcccccCCC-CCC-CCCCCCCcc
Q 003714 340 LESGTLGAKCNTQMVIPHLTENYGAS-RDP-PEKQAPMCT 377 (800)
Q Consensus 340 i~sgt~G~~G~v~~~ip~~t~~y~~~-~~~-~~~~~p~ct 377 (800)
|.+++.|+.|++.++.|+.++||.|. +.+ +....|.|.
T Consensus 157 v~~~~~g~~g~~~v~~~~~~~c~~c~~~~~~~~~~~~~c~ 196 (390)
T PRK07411 157 VYGSIFRFEGQATVFNYEGGPNYRDLYPEPPPPGMVPSCA 196 (390)
T ss_pred EEEEEccCEEEEEEECCCCCCChHHhcCCCCCcccCCCCc
Confidence 99999999999998888889999995 333 333455664
No 14
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-36 Score=315.09 Aligned_cols=165 Identities=30% Similarity=0.467 Sum_probs=156.2
Q ss_pred CcchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccc-c
Q 003714 193 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ-A 271 (800)
Q Consensus 193 ~RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~-~ 271 (800)
+||+||+++||.++|++|++++|+|+||||+||+++++|+++|| |+|+|+|.|.|+.|||+||++|+++|+|+ +
T Consensus 8 ~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~ 82 (231)
T PRK08328 8 ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGV-----GRILLIDEQTPELSNLNRQILHWEEDLGKNP 82 (231)
T ss_pred HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCccChhhhccccccChhhcCchH
Confidence 89999999999999999999999999999999999999999999 99999999999999999999999999999 6
Q ss_pred HHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccce
Q 003714 272 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 351 (800)
Q Consensus 272 Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v 351 (800)
|+++++++++++||+++|+++...+.+++ + +++++++|+||+|+||.++|..+++.|+.+++|+|.+++.|+.|++
T Consensus 83 k~~~a~~~l~~~np~v~v~~~~~~~~~~~--~--~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v 158 (231)
T PRK08328 83 KPLSAKWKLERFNSDIKIETFVGRLSEEN--I--DEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQV 158 (231)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeccCCHHH--H--HHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEE
Confidence 99999999999999999999988776432 1 4578999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccccCCCC
Q 003714 352 QMVIPHLTENYGASR 366 (800)
Q Consensus 352 ~~~ip~~t~~y~~~~ 366 (800)
.+++|+.|+||.|.-
T Consensus 159 ~~~~p~~~~c~~~~~ 173 (231)
T PRK08328 159 TTIVPGKTKRLREIF 173 (231)
T ss_pred EEECCCCCCCHHHhC
Confidence 999999999998843
No 15
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=1.2e-35 Score=328.67 Aligned_cols=177 Identities=28% Similarity=0.404 Sum_probs=163.3
Q ss_pred Ccchhhhhc--cCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccc
Q 003714 193 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 270 (800)
Q Consensus 193 ~RYdrqi~l--~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~ 270 (800)
+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+|||||+++|||+
T Consensus 7 ~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~ 81 (355)
T PRK05597 7 ARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGV-----GHITIIDDDTVDLSNLHRQVIHSTAGVGQ 81 (355)
T ss_pred hHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcccccccCcccChhHCCC
Confidence 799999999 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccc
Q 003714 271 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 350 (800)
Q Consensus 271 ~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~ 350 (800)
+||++++++++++||+++|+++..++.+++. .++++++|+||+|+||+.+|.++++.|+++++|+|.+++.|+.|+
T Consensus 82 ~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~----~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~ 157 (355)
T PRK05597 82 PKAESAREAMLALNPDVKVTVSVRRLTWSNA----LDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQ 157 (355)
T ss_pred hHHHHHHHHHHHHCCCcEEEEEEeecCHHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEE
Confidence 9999999999999999999999988875321 367899999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccccCCC-CC-CCCCCCCCccc
Q 003714 351 TQMVIPHLTENYGAS-RD-PPEKQAPMCTV 378 (800)
Q Consensus 351 v~~~ip~~t~~y~~~-~~-~~~~~~p~ctl 378 (800)
+.++.|+.++||.|. +. |+....|.|.-
T Consensus 158 v~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 187 (355)
T PRK05597 158 LSVFHAGHGPIYEDLFPTPPPPGSVPSCSQ 187 (355)
T ss_pred EEEEcCCCCCCHHHhCCCCCCccCCCCccc
Confidence 999999989999994 33 33345677753
No 16
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=5.1e-35 Score=306.69 Aligned_cols=166 Identities=30% Similarity=0.449 Sum_probs=153.6
Q ss_pred Ccchhhhhcc--CHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccc
Q 003714 193 SRYDAQISVF--GAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 270 (800)
Q Consensus 193 ~RYdrqi~l~--G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~ 270 (800)
.||+||+++| |.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|.|.|+.|||+||+++.++|||+
T Consensus 3 ~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~RQ~l~~~~diG~ 77 (240)
T TIGR02355 3 LRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGV-----GNLTLLDFDTVSLSNLQRQVLHSDANIGQ 77 (240)
T ss_pred cceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCcccccCcccceeeeHhhCCC
Confidence 7999999996 5899999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccc
Q 003714 271 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 350 (800)
Q Consensus 271 ~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~ 350 (800)
+||++++++++++||+++|+++..++.+++. .++++++|+||+|+||+++|.++++.|+.+++|+|.+++.|+.|+
T Consensus 78 ~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~----~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~ 153 (240)
T TIGR02355 78 PKVESAKDALTQINPHIAINPINAKLDDAEL----AALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQ 153 (240)
T ss_pred cHHHHHHHHHHHHCCCcEEEEEeccCCHHHH----HHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeE
Confidence 9999999999999999999999988764321 467899999999999999999999999999999999999999999
Q ss_pred eEEEe-CCcccccCCCCC
Q 003714 351 TQMVI-PHLTENYGASRD 367 (800)
Q Consensus 351 v~~~i-p~~t~~y~~~~~ 367 (800)
+.++. +..++||.|..+
T Consensus 154 v~~~~~~~~~~c~~C~~~ 171 (240)
T TIGR02355 154 VSVFTYQDGEPCYRCLSR 171 (240)
T ss_pred EEEEecCCCCCccccccc
Confidence 88765 445789999643
No 17
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=5e-35 Score=298.22 Aligned_cols=151 Identities=25% Similarity=0.462 Sum_probs=144.1
Q ss_pred CcchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccH
Q 003714 193 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 272 (800)
Q Consensus 193 ~RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~K 272 (800)
.||+||+++||.++|++|++++|+|+|+||+|||++|+|+++|| |+|+|+|+|.|+.+||+|||+|+++|||++|
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GV-----g~i~lvD~d~ve~snL~rqfl~~~~diG~~K 76 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGI-----GSLTILDDRTVTEEDLGAQFLIPAEDLGQNR 76 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCC-----CEEEEEECCcccHhhCCCCccccHHHcCchH
Confidence 59999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceE
Q 003714 273 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQ 352 (800)
Q Consensus 273 a~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v~ 352 (800)
|++++++++++||+++|+++...+.+. +++|++++|+||+|.|+.++|.++++.|+++++|++.+|+.|+.|++.
T Consensus 77 a~a~~~~L~~lNp~v~i~~~~~~~~~~-----~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~ 151 (197)
T cd01492 77 AEASLERLRALNPRVKVSVDTDDISEK-----PEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVF 151 (197)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcccc-----HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEE
Confidence 999999999999999999998877632 357889999999999999999999999999999999999999999876
Q ss_pred E
Q 003714 353 M 353 (800)
Q Consensus 353 ~ 353 (800)
+
T Consensus 152 ~ 152 (197)
T cd01492 152 A 152 (197)
T ss_pred E
Confidence 4
No 18
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=1.4e-33 Score=316.13 Aligned_cols=167 Identities=24% Similarity=0.362 Sum_probs=152.5
Q ss_pred CcchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccH
Q 003714 193 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 272 (800)
Q Consensus 193 ~RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~K 272 (800)
.|||||+|+||.++|++|++++|+||||||+|||++|||+++|| |+|+|+|.|.|+.+||+|||+++.+|||++|
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GI-----g~~tIvD~~~V~~sDL~~nFfl~~~diGk~k 75 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGI-----GSFTIVDGSKVDEEDLGNNFFLDASSLGKSR 75 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCC-----CeEEEECCCcCchhhccccccCChhhcCcHH
Confidence 48999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceE
Q 003714 273 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQ 352 (800)
Q Consensus 273 a~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v~ 352 (800)
|+++++.|+++||+++++.+...+..-. ..+.+||+++|+||.+.++...+..++++|+..++|+|.+++.|+.|+++
T Consensus 76 A~~~~~~L~eLNp~V~i~~~~e~~~~ll--~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~ 153 (425)
T cd01493 76 AEATCELLQELNPDVNGSAVEESPEALL--DNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIR 153 (425)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccchhh--hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEE
Confidence 9999999999999999999987554211 12368999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccccCCCCC
Q 003714 353 MVIPHLTENYGASRD 367 (800)
Q Consensus 353 ~~ip~~t~~y~~~~~ 367 (800)
+.+|..+ +.++.++
T Consensus 154 v~~~~h~-i~et~p~ 167 (425)
T cd01493 154 IQLKEHT-IVESHPD 167 (425)
T ss_pred EEECCeE-EEECCCC
Confidence 9999543 5555444
No 19
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=4.2e-35 Score=312.36 Aligned_cols=185 Identities=22% Similarity=0.328 Sum_probs=165.9
Q ss_pred cchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHH
Q 003714 194 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS 273 (800)
Q Consensus 194 RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka 273 (800)
.|+||+++||.++|++|++++|+|+|+||+|||+||||+++|| |+|+|+|.|.++.+||+|||+++++|||++||
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGV-----g~itI~D~d~ve~snL~rqf~~~~~dIGk~Ka 75 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGV-----KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRA 75 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCC-----CeEEEEcCCccchhhcccCccCChHHhCHHHH
Confidence 4999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEE
Q 003714 274 TVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQM 353 (800)
Q Consensus 274 ~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v~~ 353 (800)
++++++|+++||+++|+++...+ +++++.++|+||+|.|++++|..+|++|+.+++|+|.+++.|+.|++.+
T Consensus 76 ea~~~~L~eLNp~V~V~~~~~~~--------~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~ 147 (286)
T cd01491 76 EASQARLAELNPYVPVTVSTGPL--------TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFC 147 (286)
T ss_pred HHHHHHHHHHCCCCEEEEEeccC--------CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEe
Confidence 99999999999999999997653 2467899999999999999999999999999999999999999999887
Q ss_pred EeCCcccccCCCC--CCCCCCCCCccccCCCCCchhHHHHHHH
Q 003714 354 VIPHLTENYGASR--DPPEKQAPMCTVHSFPHNIDHCLTWARS 394 (800)
Q Consensus 354 ~ip~~t~~y~~~~--~~~~~~~p~ctl~~fP~~~~h~i~wA~~ 394 (800)
... +||.|.. .+++++++.|.+.+-+..+.||+.=.|.
T Consensus 148 dfg---~~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~~~h 187 (286)
T cd01491 148 DFG---DEFTVYDPNGEEPKSGMISSISKDNPGVVTCLDETRH 187 (286)
T ss_pred cCC---CeEEEeCCCCCcCCccceeeeecCCceEEEEECCccc
Confidence 544 5555542 1344678899998888888999754333
No 20
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=8e-35 Score=326.22 Aligned_cols=183 Identities=27% Similarity=0.485 Sum_probs=163.9
Q ss_pred CCCccCCCCccCcchhhhhc--cCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCc
Q 003714 182 PLDSTEFKPINSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSR 259 (800)
Q Consensus 182 ~l~~~~~~~~~~RYdrqi~l--~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnR 259 (800)
.+++++. +||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.||.|||+|
T Consensus 14 ~l~~~~~----~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~R 84 (392)
T PRK07878 14 ELTRDEV----ARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGV-----GTLGIVEFDVVDESNLQR 84 (392)
T ss_pred CCCHHHH----HHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEecCccccc
Confidence 4666666 899999999 99999999999999999999999999999999999 999999999999999999
Q ss_pred ccccccCcccccHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccE
Q 003714 260 QFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPL 339 (800)
Q Consensus 260 Qflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pl 339 (800)
||+|+++|||++||++++++|+++||+++|+++..++..++ ..++++++|+||+|+||+.+|.++|+.|+.+++|+
T Consensus 85 q~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~----~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~ 160 (392)
T PRK07878 85 QVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLDPSN----AVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPY 160 (392)
T ss_pred ccccChhcCCChHHHHHHHHHHHhCCCcEEEEEeccCChhH----HHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999998887532 14678999999999999999999999999999999
Q ss_pred EEecccCcccceEEEeC----CcccccCCC-CCC-CCCCCCCcc
Q 003714 340 LESGTLGAKCNTQMVIP----HLTENYGAS-RDP-PEKQAPMCT 377 (800)
Q Consensus 340 i~sgt~G~~G~v~~~ip----~~t~~y~~~-~~~-~~~~~p~ct 377 (800)
|.+++.|+.|++.++.+ +.++||.|. +.+ +...+|.|.
T Consensus 161 v~~~~~g~~G~v~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~ 204 (392)
T PRK07878 161 VWGSIYRFEGQASVFWEDAPDGLGLNYRDLYPEPPPPGMVPSCA 204 (392)
T ss_pred EEEEeccCEEEEEEEecCCCCCCCCeeeeecCCCCCccCCCCCc
Confidence 99999999999998874 368999995 332 223345553
No 21
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=9.3e-35 Score=322.23 Aligned_cols=181 Identities=27% Similarity=0.496 Sum_probs=162.6
Q ss_pred CCccCCCCccCcchhhhhc--cCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcc
Q 003714 183 LDSTEFKPINSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQ 260 (800)
Q Consensus 183 l~~~~~~~~~~RYdrqi~l--~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQ 260 (800)
+++.|. .||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.|+.|||+||
T Consensus 14 ~~~~e~----~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gv-----g~i~ivD~D~ve~sNL~RQ 84 (370)
T PRK05600 14 LPTSEL----RRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGV-----GTITLIDDDTVDVSNIHRQ 84 (370)
T ss_pred CCHHHH----HHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEeCCEEcccccccc
Confidence 454554 899999999 99999999999999999999999999999999999 9999999999999999999
Q ss_pred cccccCcccccHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEE
Q 003714 261 FLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLL 340 (800)
Q Consensus 261 flf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli 340 (800)
++|+++|||++||++++++++++||+++|+++..++.+++. .++++++|+||+|+||+++|.++++.|+.+++|+|
T Consensus 85 ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~----~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v 160 (370)
T PRK05600 85 ILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLTAENA----VELLNGVDLVLDGSDSFATKFLVADAAEITGTPLV 160 (370)
T ss_pred ccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999988875332 36789999999999999999999999999999999
Q ss_pred EecccCcccceEEEeCCc---ccccCCC-CC-CCCCCCCCc
Q 003714 341 ESGTLGAKCNTQMVIPHL---TENYGAS-RD-PPEKQAPMC 376 (800)
Q Consensus 341 ~sgt~G~~G~v~~~ip~~---t~~y~~~-~~-~~~~~~p~c 376 (800)
.+++.|+.|++.++.|.. +.||.|. +. |+....|.|
T Consensus 161 ~~~~~g~~G~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~c 201 (370)
T PRK05600 161 WGTVLRFHGELAVFNSGPDHRGVGLRDLFPEQPSGDSIPDC 201 (370)
T ss_pred EEEEecCEEEEEEEecCCCCCCCCcHhhCCCCCccccCCCC
Confidence 999999999999888753 6799884 33 233344566
No 22
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=2.5e-34 Score=293.46 Aligned_cols=154 Identities=26% Similarity=0.448 Sum_probs=143.8
Q ss_pred cchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCccccccc--Cccccc
Q 003714 194 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD--WNIGQA 271 (800)
Q Consensus 194 RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~--~dIG~~ 271 (800)
|||||+++||.++|++|++++|+||||||+|||++|+|+++|| |+|+|+|.|.|+.+||+|||+|++ .|+|++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GV-----g~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~ 75 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGI-----DSITIVDHRLVSTEDLGSNFFLDAEVSNSGMN 75 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEECCcCChhcCcccEecccchhhcCch
Confidence 7999999999999999999999999999999999999999999 999999999999999999999998 899999
Q ss_pred HHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccce
Q 003714 272 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 351 (800)
Q Consensus 272 Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v 351 (800)
||++++++++++||+++|+++...+....+ ..++|++++|+||+|.|+..+|.++++.|+.+++|++.+++.|+.|++
T Consensus 76 Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~--~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v 153 (198)
T cd01485 76 RAAASYEFLQELNPNVKLSIVEEDSLSNDS--NIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYA 153 (198)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecccccchh--hHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEE
Confidence 999999999999999999999877652111 235789999999999999999999999999999999999999999998
Q ss_pred EEE
Q 003714 352 QMV 354 (800)
Q Consensus 352 ~~~ 354 (800)
.+.
T Consensus 154 ~~~ 156 (198)
T cd01485 154 FFD 156 (198)
T ss_pred EEc
Confidence 654
No 23
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=310.34 Aligned_cols=165 Identities=30% Similarity=0.460 Sum_probs=155.4
Q ss_pred Ccchhhhhc--cCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCccc-
Q 003714 193 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG- 269 (800)
Q Consensus 193 ~RYdrqi~l--~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG- 269 (800)
+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+||+||+++|+|
T Consensus 3 ~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGv-----g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~ 77 (338)
T PRK12475 3 ERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGI-----GKLTIADRDYVEWSNLQRQQLYTEEDAKQ 77 (338)
T ss_pred chhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCcccccccCccccccHHHccC
Confidence 699999998 89999999999999999999999999999999999 9999999999999999999999999985
Q ss_pred -ccHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcc
Q 003714 270 -QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAK 348 (800)
Q Consensus 270 -~~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~ 348 (800)
++||++|+++++++||+++|+++...+++++ + +++++++|+||+|+||.++|..+++.|+++++|+|.+++.|+.
T Consensus 78 g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~--~--~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~ 153 (338)
T PRK12475 78 KKPKAIAAKEHLRKINSEVEIVPVVTDVTVEE--L--EELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSY 153 (338)
T ss_pred CccHHHHHHHHHHHHCCCcEEEEEeccCCHHH--H--HHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccE
Confidence 8999999999999999999999988776432 1 3567899999999999999999999999999999999999999
Q ss_pred cceEEEeCCcccccCCCC
Q 003714 349 CNTQMVIPHLTENYGASR 366 (800)
Q Consensus 349 G~v~~~ip~~t~~y~~~~ 366 (800)
|++.+++|+.|+||.|.-
T Consensus 154 G~~~~~~P~~tpC~~Cl~ 171 (338)
T PRK12475 154 GVTYTIIPGKTPCLRCLM 171 (338)
T ss_pred EEEEEECCCCCCCHHHhc
Confidence 999999999999999964
No 24
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=2.1e-33 Score=308.24 Aligned_cols=166 Identities=30% Similarity=0.426 Sum_probs=155.6
Q ss_pred cCcchhhhhc--cCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCccc
Q 003714 192 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 269 (800)
Q Consensus 192 ~~RYdrqi~l--~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG 269 (800)
++||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+||+||+++|||
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~RQ~l~~~~dig 76 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGV-----GKVTIVDRDYVEWSNLQRQQLYTESDVK 76 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCccCHHHcCccccccHHHhc
Confidence 3799999988 99999999999999999999999999999999999 9999999999999999999999999995
Q ss_pred --ccHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCc
Q 003714 270 --QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGA 347 (800)
Q Consensus 270 --~~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~ 347 (800)
++|+++++++++++||+++++++...+++++. .++++++|+||+|+||+++|.++++.|+.+++|+|.+++.|+
T Consensus 77 ~g~~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~----~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~ 152 (339)
T PRK07688 77 NNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEEL----EELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGS 152 (339)
T ss_pred CCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHH----HHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeee
Confidence 59999999999999999999999887764322 356789999999999999999999999999999999999999
Q ss_pred ccceEEEeCCcccccCCCC
Q 003714 348 KCNTQMVIPHLTENYGASR 366 (800)
Q Consensus 348 ~G~v~~~ip~~t~~y~~~~ 366 (800)
.|++.++.|+.++||.|.-
T Consensus 153 ~G~~~~~~p~~~pC~~Cl~ 171 (339)
T PRK07688 153 YGLSYTIIPGKTPCLRCLL 171 (339)
T ss_pred eeEEEEECCCCCCCeEeec
Confidence 9999999999999999953
No 25
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.98 E-value=2.6e-32 Score=289.50 Aligned_cols=166 Identities=36% Similarity=0.598 Sum_probs=156.2
Q ss_pred CcchhhhhccC--HHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccc
Q 003714 193 SRYDAQISVFG--AKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 270 (800)
Q Consensus 193 ~RYdrqi~l~G--~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~ 270 (800)
.||+||+.+++ .++|++|++++|+|||+||+||+++++|+++|| |+++|+|.|+|+.|||+||++|++.|||+
T Consensus 9 ~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGv-----g~l~i~D~d~v~~snL~rq~~~~~~dig~ 83 (254)
T COG0476 9 ERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGV-----GKLTIVDFDTVELSNLQRQFLFTEADVGK 83 (254)
T ss_pred HhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCC-----CeEEEEcCCcccccccCceeeecccccCC
Confidence 89999999954 445999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccc
Q 003714 271 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 350 (800)
Q Consensus 271 ~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~ 350 (800)
+|++++++.++++||.++++++...++.++. ..++.++|+|++|+||+.+|..+|..|+.+++|++++|+.|+.|+
T Consensus 84 ~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~----~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~ 159 (254)
T COG0476 84 PKAEVAAKALRKLNPLVEVVAYLERLDEENA----EELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQ 159 (254)
T ss_pred cHHHHHHHHHHHhCCCCeEEEeecccChhhH----HHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEE
Confidence 9999999999999999999999998775443 467899999999999999999999999999999999999999999
Q ss_pred eEEEeCC-cccccCCCCC
Q 003714 351 TQMVIPH-LTENYGASRD 367 (800)
Q Consensus 351 v~~~ip~-~t~~y~~~~~ 367 (800)
+.++.|. .++||.|.-+
T Consensus 160 ~~~~~~~~~~~c~~~~~~ 177 (254)
T COG0476 160 VTVIIPGDKTPCYRCLFP 177 (254)
T ss_pred EEEEecCCCCCcccccCC
Confidence 9999999 5999999543
No 26
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.97 E-value=3.9e-32 Score=303.58 Aligned_cols=177 Identities=29% Similarity=0.547 Sum_probs=160.4
Q ss_pred Ccchhhhhc--cCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccc
Q 003714 193 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 270 (800)
Q Consensus 193 ~RYdrqi~l--~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~ 270 (800)
.||+||+.+ ||.++|++|++++|+|+||||+||+++++|+++|| |+|+|+|.|.|+.|||+||+|++++|||+
T Consensus 114 ~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gv-----g~i~lvD~d~v~~sNl~Rq~l~~~~diG~ 188 (376)
T PRK08762 114 ERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGV-----GTLGIVDHDVVDRSNLQRQILHTEDRVGQ 188 (376)
T ss_pred HHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEecchhhccccccchhhCCC
Confidence 799999999 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccc
Q 003714 271 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 350 (800)
Q Consensus 271 ~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~ 350 (800)
+||++++++++++||+++++++...+.+++. .++++++|+||+|+|++++|.++++.|+.+++|+|.+++.|+.|+
T Consensus 189 ~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~----~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~ 264 (376)
T PRK08762 189 PKVDSAAQRLAALNPDVQVEAVQERVTSDNV----EALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQ 264 (376)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEeccCChHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 9999999999999999999999887764321 356789999999999999999999999999999999999999999
Q ss_pred eEEEeCCc----ccccCCC-CC-CCCCCCCCccc
Q 003714 351 TQMVIPHL----TENYGAS-RD-PPEKQAPMCTV 378 (800)
Q Consensus 351 v~~~ip~~----t~~y~~~-~~-~~~~~~p~ctl 378 (800)
+.++.|+. ++||.|. +. |.....|.|..
T Consensus 265 v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~~~ 298 (376)
T PRK08762 265 VSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCAE 298 (376)
T ss_pred EEEEeCCCCCCCCCCHhhcCCCCCCcccCCCCcc
Confidence 99999876 8999995 32 22223455643
No 27
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.97 E-value=4.9e-33 Score=290.94 Aligned_cols=176 Identities=28% Similarity=0.460 Sum_probs=164.2
Q ss_pred CCCCccCCCCccCcchhhhhc--cCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCC
Q 003714 181 EPLDSTEFKPINSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLS 258 (800)
Q Consensus 181 ~~l~~~~~~~~~~RYdrqi~l--~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLn 258 (800)
..++.+|+ .||+||+.+ +|..+|.+|++++|+||||||+||..+..|+.+|+ |+|-|||.|.||.|||.
T Consensus 37 ~~Ls~dei----~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGv-----G~lGiVD~DvVe~sNlh 107 (427)
T KOG2017|consen 37 AGLSLDEI----LRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGV-----GRLGIVDYDVVELSNLH 107 (427)
T ss_pred cCCCHHHH----HhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCC-----CeecccccceeehhhHH
Confidence 36788888 999999998 99999999999999999999999999999999999 99999999999999999
Q ss_pred cccccccCcccccHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhccccccc
Q 003714 259 RQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKP 338 (800)
Q Consensus 259 RQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~p 338 (800)
||.++.+..+|++||+.|+..++++||+++|..|...+.+.+. .+.+++||+|+||+||+.+|+.+++.|+..|+|
T Consensus 108 RQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa----~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkp 183 (427)
T KOG2017|consen 108 RQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNA----FDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKP 183 (427)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechhhccchhH----HHHhhccceEEEcCCCccchhhhhhHHHHcCCc
Confidence 9999999999999999999999999999999999998886553 256799999999999999999999999999999
Q ss_pred EEEecccCcccceEEEeCCcccccCC-CCCCC
Q 003714 339 LLESGTLGAKCNTQMVIPHLTENYGA-SRDPP 369 (800)
Q Consensus 339 li~sgt~G~~G~v~~~ip~~t~~y~~-~~~~~ 369 (800)
++.+..+++.||..++--...+||.| ++.||
T Consensus 184 LVSgSaLr~EGQLtvYny~~GPCYRClFP~Pp 215 (427)
T KOG2017|consen 184 LVSGSALRWEGQLTVYNYNNGPCYRCLFPNPP 215 (427)
T ss_pred ccccccccccceeEEeecCCCceeeecCCCCc
Confidence 99999999999988876677999999 45554
No 28
>PRK14851 hypothetical protein; Provisional
Probab=99.97 E-value=2.7e-31 Score=312.70 Aligned_cols=167 Identities=26% Similarity=0.389 Sum_probs=156.1
Q ss_pred ccCcchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccc
Q 003714 191 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 270 (800)
Q Consensus 191 ~~~RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~ 270 (800)
...||+||+++||.+.|++|++++|+||||||+||+++++|+++|| |+|+|+|+|+||+||||||++|+.+|||+
T Consensus 22 ~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GV-----G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~ 96 (679)
T PRK14851 22 REAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGI-----GRFHIADFDQFEPVNVNRQFGARVPSFGR 96 (679)
T ss_pred HHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCC-----CeEEEEcCCEecccccccCcCcChhhCCC
Confidence 4489999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCC--HHHHHHHhhhcccccccEEEecccCcc
Q 003714 271 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDN--VNARLYVDQRCLYFQKPLLESGTLGAK 348 (800)
Q Consensus 271 ~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn--~~ar~~l~~~c~~~~~pli~sgt~G~~ 348 (800)
+|+++++++++++||.++|+++...+++++. ++|++++|+||+|+|+ ..+|.++++.|+.+++|+|.+|+.|+.
T Consensus 97 ~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~----~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~ 172 (679)
T PRK14851 97 PKLAVMKEQALSINPFLEITPFPAGINADNM----DAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYS 172 (679)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCChHHH----HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccccc
Confidence 9999999999999999999999999875432 4688999999999997 578999999999999999999999999
Q ss_pred cceEEEeCCcccccCCCCC
Q 003714 349 CNTQMVIPHLTENYGASRD 367 (800)
Q Consensus 349 G~v~~~ip~~t~~y~~~~~ 367 (800)
|++.++.|+ +.||.|.-+
T Consensus 173 g~~~~~~p~-~~~~~~~~~ 190 (679)
T PRK14851 173 SAMLVFTPQ-GMGFDDYFN 190 (679)
T ss_pred ceEEEEcCC-CCCHhHhcc
Confidence 999999997 778877544
No 29
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.97 E-value=2.4e-31 Score=277.24 Aligned_cols=162 Identities=26% Similarity=0.392 Sum_probs=142.4
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCC----c-ceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhC
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQ----G-KLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSIN 284 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~----g-~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~n 284 (800)
-+..+|+||||||+||+++++||++|+++..- | +|+|+|+|+||.|||||| +|.+.|||++||+++++++.+++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence 36789999999999999999999998643211 3 999999999999999999 57778999999999999999988
Q ss_pred CCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhccc--c-cccEEEecc--------cCc-----c
Q 003714 285 PRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY--F-QKPLLESGT--------LGA-----K 348 (800)
Q Consensus 285 p~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~--~-~~pli~sgt--------~G~-----~ 348 (800)
+++++++..++.+. .++.++|+||+|+||+++|.++++.|++ . .+|++++|+ .|. +
T Consensus 88 -~~~i~a~~~~~~~~-------~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k 159 (244)
T TIGR03736 88 -GTDWTAHPERVERS-------STLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAK 159 (244)
T ss_pred -CceEEEEEeeeCch-------hhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccc
Confidence 89999999888752 2356899999999999999999999987 3 589999999 666 7
Q ss_pred cceEEEeCCcccccCCCCCC---CCCCCCCccccC
Q 003714 349 CNTQMVIPHLTENYGASRDP---PEKQAPMCTVHS 380 (800)
Q Consensus 349 G~v~~~ip~~t~~y~~~~~~---~~~~~p~ctl~~ 380 (800)
|++++++|+.|+||.|..+| ++.+.|+||+..
T Consensus 160 ~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla~ 194 (244)
T TIGR03736 160 GENRLRLPHVGELFPELIDPSVDPDDDRPSCSLAE 194 (244)
T ss_pred cCCceecCCchhhCcccccCccCCCCCCCCchHHH
Confidence 88899999999999998887 777999999764
No 30
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=99.97 E-value=4.7e-32 Score=255.22 Aligned_cols=123 Identities=44% Similarity=0.839 Sum_probs=98.7
Q ss_pred cccccccccccccccCCCCCCcccccCCCcceEEEEEEeCCCCCHHHHHHHHHHc-CCceeeeecCCceeecCC-Ccchh
Q 003714 673 YRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILKDNPTLRELIQWLKDK-GLNAYSISCGSCLLFNSM-FPRHK 750 (800)
Q Consensus 673 ~rn~f~nla~p~~~~~eP~~~~~~~~~~~~~t~wd~~~v~~~~TL~~li~~~~~~-~l~~~~i~~g~~~lY~~~-~~~~~ 750 (800)
|||+|+|||+|+++||||.+|++.++.+.+||+||||++++++||++|+++|+++ |++++||++|+++||++| .++++
T Consensus 1 yrN~F~NLAlP~~~fsEP~~~~k~k~~~~~~T~WDr~~v~~~~Tl~~li~~~~~~~~lev~ml~~g~~~LY~~f~~~~~~ 80 (125)
T PF09358_consen 1 YRNSFLNLALPFFSFSEPIPAPKTKYNDKEWTLWDRIEVNGDMTLQELIDYFKEKYGLEVTMLSQGVSLLYSSFPPPKHK 80 (125)
T ss_dssp --EEEEETTTTEEEEE---B--EEEETTEEETTT-EEEEES--BHHHHHHHHHHTTS-EEEEEEETTEEEEETT-HHHHH
T ss_pred CccEEEEcCccceeeeeccCCCceEecCccccceeEEEEcCCCCHHHHHHHHHHHhCceEEEEEeCCEEEEecCChhhhH
Confidence 8999999999999999999999999988999999999999899999999999999 999999999999999999 55789
Q ss_pred hcccCcHHHHHHhhhccCCCCceeEEEEEEEeecCCCCccccCeE
Q 003714 751 ERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLI 795 (800)
Q Consensus 751 ~~l~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~d~~~~~v~~P~v 795 (800)
+||+++|+||++++++++++++++||+|+|+|+|++|+||++|+|
T Consensus 81 ~rl~~~i~elv~~v~k~~~~~~~~~l~l~v~~~d~~~edv~vP~i 125 (125)
T PF09358_consen 81 ERLKMPISELVEEVTKKPIPPGQKYLVLEVSCEDEDGEDVEVPYI 125 (125)
T ss_dssp HHTTSBHHHHHHHHTSS---TT--EEEEEEEEE-TTS-EE---EE
T ss_pred HHhCCcHHHHHHHhcCCCCCCCceEEEEEEEEeCCCCCccCCCCC
Confidence 999999999999999999999999999999999989999999997
No 31
>PRK14852 hypothetical protein; Provisional
Probab=99.97 E-value=5.7e-31 Score=313.25 Aligned_cols=166 Identities=25% Similarity=0.410 Sum_probs=155.4
Q ss_pred ccCcchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccc
Q 003714 191 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 270 (800)
Q Consensus 191 ~~~RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~ 270 (800)
...||+||+++||.++|++|++++|+||||||+||+++++||++|| |+|+|+|+|.||.|||||||+++.+|||+
T Consensus 311 ~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGV-----G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~ 385 (989)
T PRK14852 311 TDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGI-----GNFNLADFDAYSPVNLNRQYGASIASFGR 385 (989)
T ss_pred HHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCC-----CeEEEEcCCEecccccccccCCChhhCCC
Confidence 4579999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCH--HHHHHHhhhcccccccEEEecccCcc
Q 003714 271 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNV--NARLYVDQRCLYFQKPLLESGTLGAK 348 (800)
Q Consensus 271 ~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~--~ar~~l~~~c~~~~~pli~sgt~G~~ 348 (800)
+|+++++++++++||.++|+++...+.+++. ++|++++|+||+|+|++ ++|++++..|+.+++|+|.+|+.|+.
T Consensus 386 ~Kaevaa~~l~~INP~v~I~~~~~~I~~en~----~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~ 461 (989)
T PRK14852 386 GKLDVMTERALSVNPFLDIRSFPEGVAAETI----DAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYS 461 (989)
T ss_pred hHHHHHHHHHHHHCCCCeEEEEecCCCHHHH----HHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccC
Confidence 9999999999999999999999998876543 57899999999999984 57889999999999999999999999
Q ss_pred cceEEEeCCcccccCCCC
Q 003714 349 CNTQMVIPHLTENYGASR 366 (800)
Q Consensus 349 G~v~~~ip~~t~~y~~~~ 366 (800)
|++.++.|+. .||.|.-
T Consensus 462 g~v~v~~p~~-~~~~~~f 478 (989)
T PRK14852 462 CALLVFMPGG-MNFDSYF 478 (989)
T ss_pred eeEEEEcCCC-CCHHHhC
Confidence 9999999874 8888853
No 32
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.97 E-value=2.4e-30 Score=273.61 Aligned_cols=162 Identities=25% Similarity=0.426 Sum_probs=143.6
Q ss_pred CcchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccH
Q 003714 193 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 272 (800)
Q Consensus 193 ~RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~K 272 (800)
.||+||.++||.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|+|.|+.||||||+++..++||++|
T Consensus 11 ~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GV-----g~itLiD~D~V~~sNlnRQ~~~~~~~vG~~K 85 (268)
T PRK15116 11 QRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGI-----GAITLIDMDDVCVTNTNRQIHALRDNVGLAK 85 (268)
T ss_pred HHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCEecccccccccccChhhcChHH
Confidence 79999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCceEEEEecccCCCcccccchhhc-cCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccc-
Q 003714 273 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFW-ENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN- 350 (800)
Q Consensus 273 a~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~-~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~- 350 (800)
++++++++.++||+++|+++...+.+++. ++++ .++|+||+|.|++.++..++++|+.+++|+|.+|..|-+..
T Consensus 86 ve~~~~rl~~INP~~~V~~i~~~i~~e~~----~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp 161 (268)
T PRK15116 86 AEVMAERIRQINPECRVTVVDDFITPDNV----AEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDP 161 (268)
T ss_pred HHHHHHHHHhHCCCcEEEEEecccChhhH----HHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCC
Confidence 99999999999999999999887764432 1233 57999999999999999999999999999999887775554
Q ss_pred eEEEeCCcccccC
Q 003714 351 TQMVIPHLTENYG 363 (800)
Q Consensus 351 v~~~ip~~t~~y~ 363 (800)
.++.+-+++..+.
T Consensus 162 ~~~~~~di~~t~~ 174 (268)
T PRK15116 162 TQIQVVDLAKTIQ 174 (268)
T ss_pred CeEEEEeeecccC
Confidence 3455555544443
No 33
>PRK07877 hypothetical protein; Provisional
Probab=99.96 E-value=1.8e-29 Score=297.87 Aligned_cols=183 Identities=21% Similarity=0.316 Sum_probs=160.8
Q ss_pred cceeeecccCCCCCCCCCccCCCCccCcchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEE
Q 003714 167 YQFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTI 246 (800)
Q Consensus 167 ~q~~~fd~~~~l~~~~l~~~~~~~~~~RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~i 246 (800)
..|.||--.+.+. ..++++++ ...||+||+.+||.++|++|++++|+||||| +||.++.+||++||+ |+|+|
T Consensus 65 ~~w~~~pw~~~~v-~~~~~~~~--~~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvv----G~l~l 136 (722)
T PRK07877 65 GRWVYYPWRRTVV-HLLGPREF--RAVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLC----GELRL 136 (722)
T ss_pred CcEEEecchhhee-ecCCHHHh--hHHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCC----CeEEE
Confidence 4799987655554 34566665 5689999999999999999999999999997 999999999999942 99999
Q ss_pred ecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHH
Q 003714 247 TDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARL 326 (800)
Q Consensus 247 vD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~ 326 (800)
+|.|.||.|||||| +++..|||++|+++++++++++||+++|+++...+++++. ++|++++|+||+|+||+++|.
T Consensus 137 vD~D~ve~sNLnRq-~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~----~~~l~~~DlVvD~~D~~~~R~ 211 (722)
T PRK07877 137 ADFDTLELSNLNRV-PAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNV----DAFLDGLDVVVEECDSLDVKV 211 (722)
T ss_pred EcCCEEcccccccc-cCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHH----HHHhcCCCEEEECCCCHHHHH
Confidence 99999999999999 5888999999999999999999999999999999986543 467899999999999999999
Q ss_pred HHhhhcccccccEEEecccCcccceE----EEeCCcccccCCC
Q 003714 327 YVDQRCLYFQKPLLESGTLGAKCNTQ----MVIPHLTENYGAS 365 (800)
Q Consensus 327 ~l~~~c~~~~~pli~sgt~G~~G~v~----~~ip~~t~~y~~~ 365 (800)
.+++.|+.+++|+|.++..+ |++. -+.| .++||.|.
T Consensus 212 ~ln~~a~~~~iP~i~~~~~~--g~~~~e~~~~~p-~~pc~~cl 251 (722)
T PRK07877 212 LLREAARARRIPVLMATSDR--GLLDVERFDLEP-DRPILHGL 251 (722)
T ss_pred HHHHHHHHcCCCEEEEcCCC--CCcCcceeeeCC-CCceeecc
Confidence 99999999999999888555 6652 2355 68999994
No 34
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.96 E-value=6e-29 Score=258.65 Aligned_cols=155 Identities=29% Similarity=0.439 Sum_probs=138.5
Q ss_pred cCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHH
Q 003714 202 FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAT 281 (800)
Q Consensus 202 ~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~ 281 (800)
+|.++|++|++++|+|+||||+||+++++|+++|| |+|+|+|+|.|+.||||||+++..+|||++|+++++++++
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GV-----g~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~ 75 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGV-----GKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIR 75 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHH
Confidence 68999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccc-eEEEeCCccc
Q 003714 282 SINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN-TQMVIPHLTE 360 (800)
Q Consensus 282 ~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~-v~~~ip~~t~ 360 (800)
++||+++|+++...+.+++.. ..+..++|+||+|.|+..+|..++++|+.+++|+|.++..|-+.. .++.+.++..
T Consensus 76 ~inP~~~V~~~~~~i~~~~~~---~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~ 152 (231)
T cd00755 76 DINPECEVDAVEEFLTPDNSE---DLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISK 152 (231)
T ss_pred HHCCCcEEEEeeeecCHhHHH---HHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEec
Confidence 999999999999888754321 223357999999999999999999999999999999988887655 5666666665
Q ss_pred ccCC
Q 003714 361 NYGA 364 (800)
Q Consensus 361 ~y~~ 364 (800)
++.|
T Consensus 153 t~~~ 156 (231)
T cd00755 153 TSGD 156 (231)
T ss_pred cccC
Confidence 5544
No 35
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.96 E-value=7.3e-29 Score=255.69 Aligned_cols=164 Identities=27% Similarity=0.369 Sum_probs=142.6
Q ss_pred ccCcchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccc
Q 003714 191 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 270 (800)
Q Consensus 191 ~~~RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~ 270 (800)
.+.-++++...||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.|+.+||+||+++ ++|+|+
T Consensus 7 ~~~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~~~-~~dvG~ 80 (212)
T PRK08644 7 MEEFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGV-----GNLKLVDFDVVEPSNLNRQQYF-ISQIGM 80 (212)
T ss_pred HHHHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCEeccccccccEee-hhhCCC
Confidence 3445667778899999999999999999999999999999999999 9999999999999999999977 569999
Q ss_pred cHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccc-cccEEEecccCccc
Q 003714 271 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF-QKPLLESGTLGAKC 349 (800)
Q Consensus 271 ~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~-~~pli~sgt~G~~G 349 (800)
+|+++++++++++||+++++++...+.+++. +++++++|+||+|+||+.+|..+++.|+++ ++|+|.++..|..|
T Consensus 81 ~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~----~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~ 156 (212)
T PRK08644 81 PKVEALKENLLEINPFVEIEAHNEKIDEDNI----EELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYG 156 (212)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEeeecCHHHH----HHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccC
Confidence 9999999999999999999999988765322 367899999999999999999999999998 99999886667677
Q ss_pred ceEEEeCCc--ccccCC
Q 003714 350 NTQMVIPHL--TENYGA 364 (800)
Q Consensus 350 ~v~~~ip~~--t~~y~~ 364 (800)
++..+.|.. ..||.|
T Consensus 157 ~~~~~~~~~~~~~~~~~ 173 (212)
T PRK08644 157 DSNSIKTRRIGKNFYIV 173 (212)
T ss_pred CceEEEecCCCCCeeEC
Confidence 765555532 445533
No 36
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.95 E-value=2e-28 Score=235.04 Aligned_cols=134 Identities=34% Similarity=0.649 Sum_probs=121.5
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEE
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 290 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~ 290 (800)
+++||+|+|+||+||+++++|+++|+ |+|+|+|.|.|+.+||+||++++.+|+|++|+++++++++++||.++++
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv-----~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~ 75 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGV-----GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVE 75 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTT-----SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCC-----CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeee
Confidence 57899999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEE
Q 003714 291 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQM 353 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v~~ 353 (800)
++...+.++.. .++++++|+||+|+|+.++|.+++++|+++++|+|++|+.|+.|+++.
T Consensus 76 ~~~~~~~~~~~----~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 76 AIPEKIDEENI----EELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp EEESHCSHHHH----HHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred eeecccccccc----cccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 99998843221 456789999999999999999999999999999999999999999854
No 37
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.95 E-value=2.1e-28 Score=298.20 Aligned_cols=150 Identities=20% Similarity=0.370 Sum_probs=142.8
Q ss_pred cCcchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCccccc
Q 003714 192 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 271 (800)
Q Consensus 192 ~~RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~ 271 (800)
..||+||+++||.++|++|++++|+|+||||+|+|++|||+++|| |+|+|+|+|.|+.+||+||||++++|||++
T Consensus 4 ~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGV-----g~iti~D~d~v~~sdL~rQf~~~~~dIGk~ 78 (1008)
T TIGR01408 4 EALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGV-----KSVTLHDTEKCQAWDLSSNFFLSEDDVGRN 78 (1008)
T ss_pred HhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCeecHhhCCCceecchHHcCch
Confidence 479999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhccccc--ccEEEecccCccc
Q 003714 272 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQ--KPLLESGTLGAKC 349 (800)
Q Consensus 272 Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~--~pli~sgt~G~~G 349 (800)
||++++++|+++||.++|+++...+. .++++++|+||+|.|+.+.+..++++|+.++ +|+|.+++.|+.|
T Consensus 79 Kaea~~~~L~eLNp~V~V~~~~~~l~--------~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G 150 (1008)
T TIGR01408 79 RAEAVVKKLAELNPYVHVSSSSVPFN--------EEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFG 150 (1008)
T ss_pred HHHHHHHHHHHHCCCceEEEecccCC--------HHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEE
Confidence 99999999999999999999976543 4688999999999999999999999999999 9999999999999
Q ss_pred ceEEE
Q 003714 350 NTQMV 354 (800)
Q Consensus 350 ~v~~~ 354 (800)
++.+-
T Consensus 151 ~vf~D 155 (1008)
T TIGR01408 151 SLFCD 155 (1008)
T ss_pred EEEec
Confidence 87653
No 38
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.95 E-value=1.7e-27 Score=272.63 Aligned_cols=144 Identities=23% Similarity=0.290 Sum_probs=128.2
Q ss_pred HHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcc---cccHHHHHHHHHH
Q 003714 205 KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI---GQAKSTVAASAAT 281 (800)
Q Consensus 205 ~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dI---G~~Ka~vaa~~l~ 281 (800)
-+.++|++++|+||||||+||+++++|+++|| |+|+|||.|+|+.|||+||+||+.+|+ |++||++|+++|+
T Consensus 331 l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GV-----g~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk 405 (664)
T TIGR01381 331 LQLERYSQLKVLLLGAGTLGCNVARCLIGWGV-----RHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALK 405 (664)
T ss_pred hhHHHHhcCeEEEECCcHHHHHHHHHHHHcCC-----CeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHH
Confidence 34589999999999999999999999999999 999999999999999999999999999 9999999999999
Q ss_pred hhCCCceEEEEeccc-------CCCcc-ccc-----chhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcc
Q 003714 282 SINPRLNIEALQNRV-------GPETE-NVF-----DDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAK 348 (800)
Q Consensus 282 ~~np~v~i~~~~~~v-------~~~~~-~~~-----~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~ 348 (800)
++||+++++++..++ +++.. ... -.++++++|+|++|+||.++|.+++.+|..+++|+|+++ .|+.
T Consensus 406 ~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-lGfd 484 (664)
T TIGR01381 406 RIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISAA-LGFD 484 (664)
T ss_pred HHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-eccc
Confidence 999999999998875 32110 000 135789999999999999999999999999999999985 8999
Q ss_pred cceEEE
Q 003714 349 CNTQMV 354 (800)
Q Consensus 349 G~v~~~ 354 (800)
|++-+.
T Consensus 485 g~lvmr 490 (664)
T TIGR01381 485 SYVVMR 490 (664)
T ss_pred eEEEEE
Confidence 986543
No 39
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.94 E-value=1.8e-27 Score=241.06 Aligned_cols=160 Identities=26% Similarity=0.400 Sum_probs=144.0
Q ss_pred ccCcchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccc
Q 003714 191 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 270 (800)
Q Consensus 191 ~~~RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~ 270 (800)
...||.|..+++|.++.++|++++|+|||+||+|+-++..|+|+|+ |+|+|||+|.|+.+|+|||.-....+||+
T Consensus 9 ~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGi-----g~itlID~D~v~vTN~NRQi~A~~~~iGk 83 (263)
T COG1179 9 YRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGI-----GRITLIDMDDVCVTNTNRQIHALLGDIGK 83 (263)
T ss_pred HHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCC-----CeEEEEecccccccccchhhHhhhhhccc
Confidence 3479999999999999999999999999999999999999999999 99999999999999999999998899999
Q ss_pred cHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccc
Q 003714 271 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 350 (800)
Q Consensus 271 ~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~ 350 (800)
+|+++++++++.+||.++|.++...+++++.+ +-+..++|+||||.|++.++..+-.+|+.+++|+|.+|..|-+-.
T Consensus 84 ~Kv~vm~eri~~InP~c~V~~~~~f~t~en~~---~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~D 160 (263)
T COG1179 84 PKVEVMKERIKQINPECEVTAINDFITEENLE---DLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLD 160 (263)
T ss_pred HHHHHHHHHHHhhCCCceEeehHhhhCHhHHH---HHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCC
Confidence 99999999999999999999999999876643 234568999999999999999999999999999998876665433
Q ss_pred -eEEEeCCc
Q 003714 351 -TQMVIPHL 358 (800)
Q Consensus 351 -v~~~ip~~ 358 (800)
.++-+-++
T Consensus 161 PTri~v~Di 169 (263)
T COG1179 161 PTRIQVADI 169 (263)
T ss_pred CceEEeeec
Confidence 44444444
No 40
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.94 E-value=3.6e-27 Score=228.52 Aligned_cols=133 Identities=37% Similarity=0.624 Sum_probs=125.3
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEEe
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 293 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~ 293 (800)
+|+||||||+||+++++|+++|+ |+|+|+|.|.|+.+||+||++++.+|+|++|+++++++++++||+++++.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-----~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~ 75 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-----GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVP 75 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEEEe
Q 003714 294 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVI 355 (800)
Q Consensus 294 ~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v~~~i 355 (800)
..+.+... .++++++|+||+|.|+.++|..++++|+++++|++++|+.|+.|+++++.
T Consensus 76 ~~~~~~~~----~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 76 EGISEDNL----DDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred eecChhhH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 87664322 46789999999999999999999999999999999999999999998876
No 41
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.94 E-value=1e-27 Score=260.85 Aligned_cols=157 Identities=17% Similarity=0.192 Sum_probs=144.4
Q ss_pred CCCccCCCCccCcchhhhhc---cC-HHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCC
Q 003714 182 PLDSTEFKPINSRYDAQISV---FG-AKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNL 257 (800)
Q Consensus 182 ~l~~~~~~~~~~RYdrqi~l---~G-~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNL 257 (800)
+++.+++ .||.||+.+ || .++|++|++++|+ |||+||.++.+||. || |+|+|+|.|.||.|||
T Consensus 46 ~l~~~~~----~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GV-----g~L~ivD~D~Ve~SNL 112 (318)
T TIGR03603 46 TLTKFNL----ITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NV-----GALFISDKTYFQETAE 112 (318)
T ss_pred ccCHHHH----HHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CC-----CEEEEEcCCEechhhH
Confidence 3566666 899999998 55 4589999999999 99999999999999 99 9999999999999999
Q ss_pred CcccccccCcccccHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHH--Hhhhcccc
Q 003714 258 SRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLY--VDQRCLYF 335 (800)
Q Consensus 258 nRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~--l~~~c~~~ 335 (800)
+ +||+++|||++|+++|++++.++||+++|+.+. ++++++|+||+|+||+.+|.. +|+.|+.+
T Consensus 113 ~--~L~~~~diG~~K~~~a~~~L~~lnp~v~i~~~~-------------~li~~~DlVid~tDn~~~r~L~~iN~ac~~~ 177 (318)
T TIGR03603 113 I--DLYSKEFILKKDIRDLTSNLDALELTKNVDELK-------------DLLKDYNYIIICTEHSNISLLRGLNKLSKET 177 (318)
T ss_pred H--HHhChhhcCcHHHHHHHHHHHHhCCCCEEeeHH-------------HHhCCCCEEEECCCCccHhHHHHHHHHHHHH
Confidence 9 999999999999999999999999999998642 456889999999999999965 99999999
Q ss_pred cccEEEecccCcccceEEEeCCcccccCCCC
Q 003714 336 QKPLLESGTLGAKCNTQMVIPHLTENYGASR 366 (800)
Q Consensus 336 ~~pli~sgt~G~~G~v~~~ip~~t~~y~~~~ 366 (800)
++|+|.++..|+.|++.+++|+.|+||.|.-
T Consensus 178 ~~PlV~gav~g~~Gqv~~~~P~~t~C~~Cl~ 208 (318)
T TIGR03603 178 KKPNTIAFIDGPFVFITCTLPPETGCFECLE 208 (318)
T ss_pred CCCEEEEEEccCEEEEEEEeCCCCCcHHHcc
Confidence 9999999999999999888898999999963
No 42
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.93 E-value=4.7e-26 Score=241.53 Aligned_cols=133 Identities=22% Similarity=0.289 Sum_probs=118.5
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCc--ccccHHHHHHHHHHhhCCCceEEE
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWN--IGQAKSTVAASAATSINPRLNIEA 291 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~d--IG~~Ka~vaa~~l~~~np~v~i~~ 291 (800)
||+||||||+||+++++|+++|| |+|+|+|.|.|+.|||+||+||+.+| +|++||++|+++|+++||++++++
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-----g~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~ 75 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-----RHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATG 75 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEE
Confidence 69999999999999999999999 99999999999999999999999999 999999999999999999999999
Q ss_pred EecccC-------CC-------cccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEE
Q 003714 292 LQNRVG-------PE-------TENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQM 353 (800)
Q Consensus 292 ~~~~v~-------~~-------~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v~~ 353 (800)
+...+. +. +.+. -.++++++|+|++|+||.++|..++.+|..+++|+|+ +..|+.|++-.
T Consensus 76 ~~~~Ipmpgh~~~~~~~~~~~~~~~~-l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~-aalGfdg~lvm 149 (307)
T cd01486 76 IVLSIPMPGHPISESEVPSTLKDVKR-LEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN-AALGFDSYLVM 149 (307)
T ss_pred eeeeccccccccccccccccccCHHH-HHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE-EEeccceEEEE
Confidence 987651 00 0000 1467899999999999999999999999999999998 57799888643
No 43
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.93 E-value=6.1e-26 Score=227.16 Aligned_cols=142 Identities=27% Similarity=0.389 Sum_probs=127.6
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEEe
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 293 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~ 293 (800)
+|+|+||||+||+++++|+++|+ |+|+|+|.|.|+.+||+||+++ .+|+|++|+++++++++++||+++++++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~ 74 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-----GNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAIN 74 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEE
Confidence 69999999999999999999999 9999999999999999999965 56999999999999999999999999999
Q ss_pred cccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccc-cccEEEecccCcccceEEEeCCc--ccccCCC
Q 003714 294 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF-QKPLLESGTLGAKCNTQMVIPHL--TENYGAS 365 (800)
Q Consensus 294 ~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~-~~pli~sgt~G~~G~v~~~ip~~--t~~y~~~ 365 (800)
.++.+++ .+++++++|+||+|+||+++|..+++.|.+. ++|+|.++..|..|++..+.|.. ..||.|.
T Consensus 75 ~~~~~~~----~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 75 IKIDENN----LEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred eecChhh----HHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 8876532 1467899999999999999999888877776 99999999999999988777654 4688886
No 44
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.92 E-value=1.8e-25 Score=228.59 Aligned_cols=115 Identities=21% Similarity=0.403 Sum_probs=106.8
Q ss_pred CcchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccH
Q 003714 193 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 272 (800)
Q Consensus 193 ~RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~K 272 (800)
.||+||+++||.++|++|++++|+|||+||+|||++|||+++|| |+|+|+|.|.|+.+||+|||++++ ++|++|
T Consensus 7 ~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGV-----GsItIvDdD~Ve~SNL~RQfl~~~-dvGk~K 80 (287)
T PTZ00245 7 VRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGV-----RAVAVADEGLVTDADVCTNYLMQG-EAGGTR 80 (287)
T ss_pred HHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCC-----CeEEEecCCccchhhhcccccccc-ccCCcH
Confidence 79999999999999999999999999999999999999999999 999999999999999999999998 789999
Q ss_pred HHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHH
Q 003714 273 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVN 323 (800)
Q Consensus 273 a~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ 323 (800)
+++++++++++||+++|+++..++++. .+|.+|+-+.-+.+
T Consensus 81 AeaAa~~L~eLNP~V~V~~i~~rld~~----------n~fqvvV~~~~~le 121 (287)
T PTZ00245 81 GARALGALQRLNPHVSVYDAVTKLDGS----------SGTRVTMAAVITEE 121 (287)
T ss_pred HHHHHHHHHHHCCCcEEEEcccccCCc----------CCceEEEEEcccHH
Confidence 999999999999999999998777532 47888888865544
No 45
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.92 E-value=9.3e-25 Score=223.17 Aligned_cols=155 Identities=30% Similarity=0.443 Sum_probs=127.1
Q ss_pred hhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHH
Q 003714 198 QISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAA 277 (800)
Q Consensus 198 qi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa 277 (800)
+.+-+|.+.|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.+||+||++ ..+|+|++|+++++
T Consensus 7 ~~~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~~-~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 7 LVARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGI-----GKLILVDFDVVEPSNLNRQQY-KASQVGEPKTEALK 80 (200)
T ss_pred HHHhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEECCCEEcccccccccC-ChhhCCCHHHHHHH
Confidence 445689999999999999999999999999999999999 999999999999999999975 55799999999999
Q ss_pred HHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcc-ccc-ccEEEecccCcccce--EE
Q 003714 278 SAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCL-YFQ-KPLLESGTLGAKCNT--QM 353 (800)
Q Consensus 278 ~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~-~~~-~pli~sgt~G~~G~v--~~ 353 (800)
+.++++||.++++++..++++++. .++++++|+||+|+||+++|..+.+.|. .++ .+++.+ .|..|+. ..
T Consensus 81 ~~l~~inp~~~i~~~~~~i~~~~~----~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~--~g~~g~~~~~~ 154 (200)
T TIGR02354 81 ENISEINPYTEIEAYDEKITEENI----DKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAA--SGLAGYDDANS 154 (200)
T ss_pred HHHHHHCCCCEEEEeeeeCCHhHH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEE--eccccCCCCce
Confidence 999999999999999988875332 3578899999999999999988665554 444 455542 3444443 33
Q ss_pred E-eCC-cccccCC
Q 003714 354 V-IPH-LTENYGA 364 (800)
Q Consensus 354 ~-ip~-~t~~y~~ 364 (800)
+ .+. ...||.|
T Consensus 155 ~~~~~~~~~~~~~ 167 (200)
T TIGR02354 155 IKTRKISKHFYLC 167 (200)
T ss_pred EEecccCCCEEEc
Confidence 3 322 2468888
No 46
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1e-24 Score=234.73 Aligned_cols=161 Identities=25% Similarity=0.392 Sum_probs=146.7
Q ss_pred ccCcchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccc
Q 003714 191 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 270 (800)
Q Consensus 191 ~~~RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~ 270 (800)
+..|||||+|+||..+|..|..++|+++|||++|||++|||++.|| |.++++|...|+.+++..+|+...+++|+
T Consensus 6 ~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gi-----gs~tvvd~~~v~~~d~g~nF~~~~~~~Gk 80 (523)
T KOG2016|consen 6 PKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGI-----GSFTVVDGSKVEQGDLGNNFFLDAKSIGK 80 (523)
T ss_pred hhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhccccc-----ccEEEEecceeeecchhhHHHHHHHhhch
Confidence 4589999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccc
Q 003714 271 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 350 (800)
Q Consensus 271 ~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~ 350 (800)
+||++..+.++++||+|+-...... ++....-+..|+++|++|+.+-=+-+.-..+.++|+.+++|++.+-+.|+.|.
T Consensus 81 srA~a~~e~LqeLN~~V~~~~vee~--p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~ 158 (523)
T KOG2016|consen 81 SRAEATLEFLQELNPSVSGSFVEES--PDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGT 158 (523)
T ss_pred hHHHHHHHHHHHhChhhhcCccccC--hhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEE
Confidence 9999999999999999987776542 22222236789999999999877878888999999999999999999999999
Q ss_pred eEEEeCCc
Q 003714 351 TQMVIPHL 358 (800)
Q Consensus 351 v~~~ip~~ 358 (800)
+++.+..+
T Consensus 159 iRI~ikEH 166 (523)
T KOG2016|consen 159 IRISIKEH 166 (523)
T ss_pred EEEEeeec
Confidence 99998764
No 47
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-24 Score=225.01 Aligned_cols=160 Identities=23% Similarity=0.466 Sum_probs=148.0
Q ss_pred CCCccCCCCccCcchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCccc
Q 003714 182 PLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQF 261 (800)
Q Consensus 182 ~l~~~~~~~~~~RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQf 261 (800)
.++++|+ .-||||||+||.+.|++|+++||+|+|.+|+|.|++|||+++|| |+++++|.-.|...+++-||
T Consensus 5 else~E~----alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV-----~~ltlLD~~~Vt~Ed~~~qF 75 (331)
T KOG2014|consen 5 ELSEQEI----ALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGV-----GSLTLLDDRLVTEEDVGAQF 75 (331)
T ss_pred hhhHHHH----HHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhccc-----ceeEEeeccccchhcCCcee
Confidence 4566676 89999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred ccccCcccccHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEE
Q 003714 262 LFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLE 341 (800)
Q Consensus 262 lf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~ 341 (800)
|.+.+++|+.||++..++++.+||.|+|......+.+. +++||.+||+||-.--+.+++..+|..|+.++++++.
T Consensus 76 li~~~~vg~~raeas~erl~~LNPmV~v~~d~edl~ek-----~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a 150 (331)
T KOG2014|consen 76 LISASSVGQTRAEASLERLQDLNPMVDVSVDKEDLSEK-----DEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYA 150 (331)
T ss_pred EEchhhhchHHHHHHHHHHHhcCCceEEEechhhhhhc-----chhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEe
Confidence 99999999999999999999999999999987776643 3589999999988878889999999999999999999
Q ss_pred ecccCcccceEEEe
Q 003714 342 SGTLGAKCNTQMVI 355 (800)
Q Consensus 342 sgt~G~~G~v~~~i 355 (800)
++..|+.|++..-+
T Consensus 151 ~d~~g~~Gy~F~dL 164 (331)
T KOG2014|consen 151 GDCFGLCGYAFADL 164 (331)
T ss_pred ccccceeeeeeeeh
Confidence 99999999875543
No 48
>PRK06153 hypothetical protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=229.24 Aligned_cols=130 Identities=19% Similarity=0.191 Sum_probs=118.1
Q ss_pred HHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCccc-ccccCcccc--cHHHHHHHHH
Q 003714 204 AKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQF-LFRDWNIGQ--AKSTVAASAA 280 (800)
Q Consensus 204 ~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQf-lf~~~dIG~--~Ka~vaa~~l 280 (800)
...|++|++++|+||||||+||.++..||++|| |+|+|+|.|.|+.||||||+ +|+.+|+|+ +|++++++++
T Consensus 168 ~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GV-----geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl 242 (393)
T PRK06153 168 GALSAKLEGQRIAIIGLGGTGSYILDLVAKTPV-----REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRY 242 (393)
T ss_pred HHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCC-----CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHH
Confidence 467999999999999999999999999999999 99999999999999999998 678899999 9999999999
Q ss_pred HhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEeccc
Q 003714 281 TSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTL 345 (800)
Q Consensus 281 ~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~ 345 (800)
.++||+ |.++...+.+++. ..+.++|+||+|+|+.++|..+++.|..+++|+|++|..
T Consensus 243 ~~in~~--I~~~~~~I~~~n~-----~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 243 SNMRRG--IVPHPEYIDEDNV-----DELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred HHhCCe--EEEEeecCCHHHH-----HHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec
Confidence 999985 6777777754332 346899999999999999999999999999999998863
No 49
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=99.88 E-value=1.7e-23 Score=223.46 Aligned_cols=83 Identities=61% Similarity=1.117 Sum_probs=81.0
Q ss_pred CCCCCCCCceeEEEcCCceEEEecCCCccCccccCceEEEEeeceEEecccHHHHhcCCCccccccCcCCCCCchHHHHH
Q 003714 1 MTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAF 80 (800)
Q Consensus 1 m~~ln~~~~~~i~v~~~~~f~i~~dt~~~~~y~~gg~~~qvK~p~~~~f~sL~e~l~~p~~~~~~d~~k~~r~~~l~~~l 80 (800)
|+|||+++|++|+|++||+|+| |||++|++|++||+++|||
T Consensus 203 m~~lN~~~~~~v~~~~~~~f~i-~d~~~~~~y~~gG~~~qvK-------------------------------------- 243 (286)
T cd01491 203 MTELNGCEPRKIKVKGPYTFSI-GDTSSFSEYIRGGIVTQVK-------------------------------------- 243 (286)
T ss_pred chhhCCCccEEEEECCCCeEEE-CcCcCcCccccCcEEEEEe--------------------------------------
Confidence 8999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhhhccccchhHHHhhhhhhhhhhhccc
Q 003714 81 QALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACS 160 (800)
Q Consensus 81 ~aL~~F~~~~gr~P~~~~~~D~~~l~~i~~~i~~~~~~~~~~~l~~~~i~~~~~~~~~el~PvaA~iGGi~aQEviK~it 160 (800)
++|+||++||++||||||+||
T Consensus 244 -----------------------------------------------------------~~~~~~~~g~~~~q~~~~~~~ 264 (286)
T cd01491 244 -----------------------------------------------------------LSPMAAFFGGLAAQEVLKACS 264 (286)
T ss_pred -----------------------------------------------------------cccHHHHhhhHHHHHHHHHcC
Confidence 799999999999999999999
Q ss_pred CccccccceeeecccCCCCCC
Q 003714 161 GKFHPLYQFFYFDSVESLPTE 181 (800)
Q Consensus 161 ~k~~Pi~q~~~fd~~~~l~~~ 181 (800)
|||+|++||||||++|+||..
T Consensus 265 ~~~~p~~q~~~~~~~~~l~~~ 285 (286)
T cd01491 265 GKFTPLKQWLYFDALECLPED 285 (286)
T ss_pred CCCCceeeEEEecHHHhcCCC
Confidence 999999999999999999853
No 50
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.87 E-value=1e-22 Score=171.08 Aligned_cols=66 Identities=47% Similarity=0.795 Sum_probs=55.9
Q ss_pred eecccCCCCchhHHHHHhhhhhhhccCCCCCCHHHHHHHhCCccchhhhhHHHHHHHHHHHHHHHhhC
Q 003714 599 QFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDG 666 (800)
Q Consensus 599 ~FeKDDd~n~hidFV~AasNLRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~VaGl~~lEl~K~l~~ 666 (800)
+|||||+. |++||+|+|||||++||||+.|++++++++|+||||++||||+|||++|+|++|++++
T Consensus 1 ~Fd~dd~~--h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~ 66 (67)
T PF02134_consen 1 EFDKDDPL--HLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQN 66 (67)
T ss_dssp ---TTSHH--HHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcHH--HHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhc
Confidence 59999997 9999999999999999999999999999999999999999999999999999999986
No 51
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.86 E-value=3.2e-22 Score=204.22 Aligned_cols=166 Identities=27% Similarity=0.439 Sum_probs=145.9
Q ss_pred Ccchhhhhc--cC-HHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCccc
Q 003714 193 SRYDAQISV--FG-AKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 269 (800)
Q Consensus 193 ~RYdrqi~l--~G-~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG 269 (800)
.-|+|.+.+ .| .+..++|+...|.|||.||+|+-.+..|.++|+ |++.+.|.|.||..|+||- ||+++..|
T Consensus 60 NPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGI-----GkLlLfDYDkVElANMNRL-Ff~P~QaG 133 (422)
T KOG2336|consen 60 NPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGI-----GKLLLFDYDKVELANMNRL-FFQPDQAG 133 (422)
T ss_pred ChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCc-----ceEEEeecchhhhhccccc-ccCccccc
Confidence 568888776 23 366899999999999999999999999999999 9999999999999999995 57888999
Q ss_pred ccHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhc-----------cCccEEEEccCCHHHHHHHhhhccccccc
Q 003714 270 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFW-----------ENITCVINALDNVNARLYVDQRCLYFQKP 338 (800)
Q Consensus 270 ~~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~-----------~~~dvVi~a~Dn~~ar~~l~~~c~~~~~p 338 (800)
.+|+++|++.|..+||++.|+.|..+++.-. -| +.|. +..|+|+.|+||++||..+|..|-..+.-
T Consensus 134 lsKv~AA~~TL~~iNPDV~iE~hn~NITTve--nF-d~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~ 210 (422)
T KOG2336|consen 134 LSKVDAAVQTLAEINPDVVIEVHNYNITTVE--NF-DTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQT 210 (422)
T ss_pred chHHHHHHHHHHhcCCCeEEEEeecceeeeh--hH-HHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999999998886421 12 1121 34899999999999999999999999999
Q ss_pred EEEecccC--cccceEEEeCCcccccCCCCC
Q 003714 339 LLESGTLG--AKCNTQMVIPHLTENYGASRD 367 (800)
Q Consensus 339 li~sgt~G--~~G~v~~~ip~~t~~y~~~~~ 367 (800)
|+++|... ..|++|.++|+.|+||.|.+.
T Consensus 211 WmESGVSEnAVSGHIQ~i~PGetACFACaPP 241 (422)
T KOG2336|consen 211 WMESGVSENAVSGHIQLIVPGETACFACAPP 241 (422)
T ss_pred HHHccCccccccceeEEecCCccceecccCc
Confidence 99999875 579999999999999999653
No 52
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.2e-20 Score=191.63 Aligned_cols=158 Identities=22% Similarity=0.316 Sum_probs=139.2
Q ss_pred CcchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccH
Q 003714 193 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 272 (800)
Q Consensus 193 ~RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~K 272 (800)
+...|++.+||.++|++|.++=|+||||||+|+.++-.|+++|+ ++|.|||+|.|..|.||||-...-.|||.||
T Consensus 55 eqLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~-----qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK 129 (430)
T KOG2018|consen 55 EQLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGV-----QKIRIVDFDQVSLSSLNRHSCATLADVGTPK 129 (430)
T ss_pred HHHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcC-----ceEEEechhhccHhhhhhhhhhhHhhcCCch
Confidence 44567888999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccc-e
Q 003714 273 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN-T 351 (800)
Q Consensus 273 a~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~-v 351 (800)
+.++++.++++.|.+.|++...-.++++++ +-.+.+.|+|++|+||.+++.-+-.+|..+++++|.+-..+.+.. .
T Consensus 130 ~~clkkh~skiaPw~eIdar~~l~~~~s~e---dll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksDPT 206 (430)
T KOG2018|consen 130 VMCLKKHFSKIAPWCEIDARNMLWTSSSEE---DLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPT 206 (430)
T ss_pred HHHHHHHHHhhCccceecHHHhhcCCCchh---hhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCCCc
Confidence 999999999999999999988877765543 234567999999999999999999999999999998766665554 4
Q ss_pred EEEeCCc
Q 003714 352 QMVIPHL 358 (800)
Q Consensus 352 ~~~ip~~ 358 (800)
++-+.++
T Consensus 207 rv~v~Di 213 (430)
T KOG2018|consen 207 RVNVADI 213 (430)
T ss_pred eeehhhc
Confidence 4444443
No 53
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.3e-19 Score=207.17 Aligned_cols=150 Identities=22% Similarity=0.372 Sum_probs=141.2
Q ss_pred ccCcchhhhhccCHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccc
Q 003714 191 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 270 (800)
Q Consensus 191 ~~~RYdrqi~l~G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~ 270 (800)
..+-|+||+.++|.+.++++..++|||.|+||+|-|+||||+++|| +++||-|...+..++|+-||+++++|||+
T Consensus 16 DE~LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGV-----ksvTlhD~~~~~~~DLssqf~L~E~Digk 90 (1013)
T KOG2012|consen 16 DESLYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGV-----KSVTLHDPRPVQLSDLSSQFYLSEEDIGK 90 (1013)
T ss_pred hhhhhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhcc-----ceEEeeCCCcccHHhhccceeeeHHhcCC
Confidence 4478999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccc
Q 003714 271 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 350 (800)
Q Consensus 271 ~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~ 350 (800)
++|++..++|.++|+.|.|..+....+ .+|+++|++||-+--..+....++++|+++++.+|.+-+.|..|+
T Consensus 91 nRA~as~~~LaeLN~yV~V~v~t~~~~--------~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~ 162 (1013)
T KOG2012|consen 91 NRAEASVEKLAELNNYVPVVVLTGPLT--------EEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLFGQ 162 (1013)
T ss_pred chHHHHHHHHHHhhcceeeEEecCccc--------HHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhhhh
Confidence 999999999999999999999886443 578999999998888889999999999999999999999999998
Q ss_pred eEE
Q 003714 351 TQM 353 (800)
Q Consensus 351 v~~ 353 (800)
+..
T Consensus 163 lFC 165 (1013)
T KOG2012|consen 163 LFC 165 (1013)
T ss_pred hhc
Confidence 654
No 54
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.5e-17 Score=172.91 Aligned_cols=129 Identities=33% Similarity=0.380 Sum_probs=110.9
Q ss_pred eeceEEecccHHHHhcCCCccccccCcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCC
Q 003714 42 KQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGRV 121 (800)
Q Consensus 42 K~p~~~~f~sL~e~l~~p~~~~~~d~~k~~r~~~l~~~l~aL~~F~~~~gr~P~~~~~~D~~~l~~i~~~i~~~~~~~~~ 121 (800)
-+...+.|+|++|+|+.++. ...-.+.+|...+|++++.+..|.+.+||.|+...++|.+.++.|.+++++..
T Consensus 194 ~vk~~~~~~~~~Eal~~~~~--~k~k~~~rr~~~~~~ll~v~l~f~~s~~r~pg~~~~~d~erl~~I~~ell~s~----- 266 (331)
T KOG2014|consen 194 WVKRKVVFPSVKEALSVDWT--KKEKRKPRRTKKLYFLLPVLLKFRTSEGRDPGETSEEDLERLLQIRNELLESE----- 266 (331)
T ss_pred ehhhhhcccCHHHHHhcccc--hhhhhhhhccCcceehHHHHHHHHHhcCCCCccccHHHHHHHHHHHHhhcccc-----
Confidence 34567889999999998832 22334567888899999999999999999999778999999999999988732
Q ss_pred CcccHHHHHHHHhhhccccchhHHHhhhhhhhhhhhcccCccccccceeeecccCCC
Q 003714 122 EDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESL 178 (800)
Q Consensus 122 ~~l~~~~i~~~~~~~~~el~PvaA~iGGi~aQEviK~it~k~~Pi~q~~~fd~~~~l 178 (800)
.-+++.++ +|..+.+.|++|+||++||++||||||++|++..|++|+|+||+.++.
T Consensus 267 ~i~pd~~~-~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl~Nff~fdg~~g~ 322 (331)
T KOG2014|consen 267 TIIPDELL-EFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPLNNFFIFDGETGK 322 (331)
T ss_pred ccCCchHH-HHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCcccceEEeecccCc
Confidence 23556666 899999999999999999999999999999999999999999998765
No 55
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.9e-16 Score=171.32 Aligned_cols=132 Identities=27% Similarity=0.405 Sum_probs=109.2
Q ss_pred eEEecccHHHHhcCCCc---cccccCcCCCCCchHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCCCC
Q 003714 45 KVLNFKPLREALEDPGD---FLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGS-EEDAQKLISVATNINESLGDGR 120 (800)
Q Consensus 45 ~~~~f~sL~e~l~~p~~---~~~~d~~k~~r~~~l~~~l~aL~~F~~~~gr~P~~~~-~~D~~~l~~i~~~i~~~~~~~~ 120 (800)
++++|+++++... |.. ....+-........+|+++||+++|..++|++|+... ++|+..+..++..++.+++...
T Consensus 382 kv~r~~~~~eey~-~s~~~~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG~~~v~~D~~~lks~a~~~lse~g~~~ 460 (523)
T KOG2016|consen 382 KVCRGRTLAEEYE-KSITELIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPGEGPVEIDITKLKSIAASLLSELGLDG 460 (523)
T ss_pred eeeecchhhhhhc-ccchhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHHHhccCc
Confidence 4678999999988 411 1111111223467899999999999999999999432 6899999999999999887422
Q ss_pred CCcccHHHHHHHHhhhccccchhHHHhhhhhhhhhhhcccCccccccceeeecccCCC
Q 003714 121 VEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESL 178 (800)
Q Consensus 121 ~~~l~~~~i~~~~~~~~~el~PvaA~iGGi~aQEviK~it~k~~Pi~q~~~fd~~~~l 178 (800)
..+.++.+.+|||+.++|+|.|+||+||++||||||.+|++|.||+|+|+|||+..-
T Consensus 461 -~~v~d~~i~E~cR~gaaElH~VsAfiGGiaaQEvIKLiTkQyvPidNTFIfnGi~~~ 517 (523)
T KOG2016|consen 461 -NAVTDDAIHEICRFGAAELHVVSAFIGGIAAQEVIKLITKQYVPIDNTFIFNGITQE 517 (523)
T ss_pred -ccCcHHHHHHHHhcCCchhHHHHHHHhhHHHHHHHHHHHhceecccceeEecccccc
Confidence 367889999999999999999999999999999999999999999999999997653
No 56
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.56 E-value=5.7e-16 Score=119.24 Aligned_cols=45 Identities=49% Similarity=1.046 Sum_probs=40.1
Q ss_pred CcccccCCCCCCCCCCCCCccccCCCCCchhHHHHHHHHhhhhhc
Q 003714 357 HLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLE 401 (800)
Q Consensus 357 ~~t~~y~~~~~~~~~~~p~ctl~~fP~~~~h~i~wA~~~F~~~F~ 401 (800)
++|+||+|+.+++++++|+|||++||+.++|||+|||++|+++|+
T Consensus 1 ~~Tecy~c~~~~~~~~~P~CTir~~P~~~~HcI~wAk~~f~~~F~ 45 (45)
T PF10585_consen 1 HVTECYECSPDPPEKSYPVCTIRNFPRTPEHCIEWAKDLFEELFG 45 (45)
T ss_dssp TTS--TTCSGGGSSSSEEHHHHHTS-SSHHHHHHHHHHHHHHHHT
T ss_pred CccccccCCCCCCCCCCCcchhhcCCCCchHHHHHHHHHHHHHhC
Confidence 579999999999999999999999999999999999999999995
No 57
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.49 E-value=4.6e-14 Score=161.30 Aligned_cols=146 Identities=20% Similarity=0.246 Sum_probs=122.3
Q ss_pred Ccchhhhhcc------CHHHHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccC
Q 003714 193 SRYDAQISVF------GAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDW 266 (800)
Q Consensus 193 ~RYdrqi~l~------G~~~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~ 266 (800)
+||..||.++ |....++.+++||+|+|.||+|+.++.+|+.+|+ ++|+.+|.|.+ .|||||
T Consensus 104 ERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~-----~~I~~vd~D~v-~SNlnR------- 170 (637)
T TIGR03693 104 DRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGF-----PRFHAIVTDAE-EHALDR------- 170 (637)
T ss_pred HHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCC-----CcEEEEecccc-chhhhH-------
Confidence 8999999885 3455566699999999999999999999999999 99999999999 999999
Q ss_pred cccccHHHHHHHHHHhhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHH--HHHHHhhhccccc---ccEEE
Q 003714 267 NIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVN--ARLYVDQRCLYFQ---KPLLE 341 (800)
Q Consensus 267 dIG~~Ka~vaa~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~--ar~~l~~~c~~~~---~pli~ 341 (800)
||+. ++.|++ +||+++|+.+.... .+++ .+.++++|+||...|+.. --+++|+.|+..+ +|++-
T Consensus 171 -IgEl-~e~A~~----~n~~v~v~~i~~~~---~~dl--~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~ 239 (637)
T TIGR03693 171 -IHEL-AEIAEE----TDDALLVQEIDFAE---DQHL--HEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAIC 239 (637)
T ss_pred -HHHH-HHHHHH----hCCCCceEeccCCc---chhH--HHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEE
Confidence 8886 555555 99999999997622 2222 245689999999999554 4568999999999 67778
Q ss_pred ecccCcccceEEEeCCcccccCC
Q 003714 342 SGTLGAKCNTQMVIPHLTENYGA 364 (800)
Q Consensus 342 sgt~G~~G~v~~~ip~~t~~y~~ 364 (800)
+|..++.|-+ +-|+.|+|+.|
T Consensus 240 ~G~~~liGPl--ftPgkTGCWeC 260 (637)
T TIGR03693 240 LKQVGLAGPV--FQQHGDECFEA 260 (637)
T ss_pred cccceeecce--ECCCCCcHHHH
Confidence 8888888865 44999999999
No 58
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.34 E-value=1.7e-12 Score=143.11 Aligned_cols=138 Identities=20% Similarity=0.292 Sum_probs=113.9
Q ss_pred HHHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcc---cccHHHHHHHHHHh
Q 003714 206 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI---GQAKSTVAASAATS 282 (800)
Q Consensus 206 ~q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dI---G~~Ka~vaa~~l~~ 282 (800)
..+++.+.|+++.|||.+||.++++|...|| .|||++|..+|..||--||-||+-+|- |++||++|+++|++
T Consensus 334 nLd~is~~KcLLLGAGTLGC~VAR~Ll~WGv-----RhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~ 408 (669)
T KOG2337|consen 334 NLDIISQTKCLLLGAGTLGCNVARNLLGWGV-----RHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKE 408 (669)
T ss_pred chhhhhcceeEEecCcccchHHHHHHHhhcc-----ceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHH
Confidence 4579999999999999999999999999999 999999999999999999999998876 49999999999999
Q ss_pred hCCCceEEEEecccCCC----ccccc---------chhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCccc
Q 003714 283 INPRLNIEALQNRVGPE----TENVF---------DDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 349 (800)
Q Consensus 283 ~np~v~i~~~~~~v~~~----~~~~~---------~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G 349 (800)
++|.+.-+.+.-.|--. .+... -+..++..|+|+-.+|+.++|..-.-.|...++-+|++. +|+..
T Consensus 409 IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaA-LGFDs 487 (669)
T KOG2337|consen 409 IFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAA-LGFDS 487 (669)
T ss_pred hCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeee-cccce
Confidence 99998777665443210 01000 034678999999999999999988888888888777653 45543
No 59
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.34 E-value=4.8e-12 Score=142.92 Aligned_cols=103 Identities=32% Similarity=0.558 Sum_probs=86.1
Q ss_pred chHHHHHHHHHHHHHH-hCCCCCCCC----------------------HHHHHHHHHHHHHHHHhcCCCCCCcccHHHHH
Q 003714 74 PPLHLAFQALDKFVSE-LGRFPVAGS----------------------EEDAQKLISVATNINESLGDGRVEDINTKLLR 130 (800)
Q Consensus 74 ~~l~~~l~aL~~F~~~-~gr~P~~~~----------------------~~D~~~l~~i~~~i~~~~~~~~~~~l~~~~i~ 130 (800)
...+++.+||.+|.++ ||.+|-+.. ..|+.++.+++.++.++.|. ..+.|+++.|+
T Consensus 287 ~~fwi~~~alk~F~~~~~g~lPl~G~lPDM~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~-~~~~I~~~~i~ 365 (425)
T cd01493 287 SSFWIMARALKEFVAEENGLLPLPGTLPDMTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGR-SPDSISDKEIK 365 (425)
T ss_pred chHHHHHHHHHHHHHhcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCHHHHH
Confidence 4578899999999988 988886543 46888888888888777653 24579999999
Q ss_pred HHHhhh--------ccccchhHHHhhhhhhhhhhhcccCccccccceeeecccCC
Q 003714 131 HFAFGA--------RAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVES 177 (800)
Q Consensus 131 ~~~~~~--------~~el~PvaA~iGGi~aQEviK~it~k~~Pi~q~~~fd~~~~ 177 (800)
.||+.+ +.--+|+|||+||++||||||.+|+||+|++|+|+|||+.+
T Consensus 366 ~FCkna~~l~~i~~~~~~~~~~~~~gg~~aqE~iK~~t~q~vp~~n~~i~dg~~~ 420 (425)
T cd01493 366 LFCKNAAFLRVIRGRSLEHNISAFMGGIAAQEVIKLITKQYVPIDNTFIFDGIRS 420 (425)
T ss_pred HHHhhHHhhhcccCCcccchHHHHHhHHHHHHHHHHHhccccccCCceEEecccc
Confidence 999876 22239999999999999999999999999999999999765
No 60
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=98.27 E-value=3.2e-07 Score=77.37 Aligned_cols=50 Identities=38% Similarity=0.751 Sum_probs=37.2
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHhhhcCCCCcCCCCC
Q 003714 498 QFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKD 552 (800)
Q Consensus 498 ~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 552 (800)
+||.+|++|++||.++|+|||++|||+ + .+...+.+++ +..+|.|.|+.+
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~-~---~~~~~~~~i~-~~iIP~~~~t~~ 50 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIP-P---LDREEIKKIA-GNIIPAFAPTNA 50 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT-------S-HHHHHHHH-TTEE-B-HHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCC-c---ccHHHHHHHh-cCcCCCcCCchh
Confidence 599999999999999999999999998 4 5788899998 778999988654
No 61
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=97.67 E-value=4.4e-05 Score=67.23 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=45.6
Q ss_pred EEeCCCCCHHHHHHHHHHc---CCceeeeecCCceeecCCCc----chhhcccCcHHHHHHh
Q 003714 709 WILKDNPTLRELIQWLKDK---GLNAYSISCGSCLLFNSMFP----RHKERMDKKVVDLARE 763 (800)
Q Consensus 709 ~~v~~~~TL~~li~~~~~~---~l~~~~i~~g~~~lY~~~~~----~~~~~l~~~l~~l~~~ 763 (800)
++++.++||++||+.+.++ .+..++|+.+++.||....| .++.||+|+|.||+..
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL~~~ 62 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKELLSD 62 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTTHHS
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHHhcC
Confidence 3567899999999999998 77889999999999998876 3579999999999764
No 62
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=97.65 E-value=0.00012 Score=83.19 Aligned_cols=32 Identities=31% Similarity=0.661 Sum_probs=29.3
Q ss_pred cCCceecccCCCCchhHHHHHhhhhhhhccCCCC
Q 003714 595 LKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPE 628 (800)
Q Consensus 595 ~~~~~FeKDDd~n~hidFV~AasNLRa~ny~I~~ 628 (800)
..|+.|+.+|+. |++||.|+|||||.+|+|+.
T Consensus 245 P~p~~fd~~~~~--h~~fv~~~a~l~a~~~~~~~ 276 (435)
T cd01490 245 PTPLEFDVNNPL--HLDFVLAAANLYAEVYGIPG 276 (435)
T ss_pred CCCCCCCCCCHH--HHHHHHHHHHHHHHhcCCCc
Confidence 568999999876 99999999999999999985
No 63
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=97.50 E-value=9.9e-05 Score=75.45 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=65.4
Q ss_pred CHHHHHHHhcCcEEEEcCCchHHH-HHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHH
Q 003714 203 GAKLQKKLEDAKVFIVGSGALGCE-FLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAT 281 (800)
Q Consensus 203 G~~~q~~L~~~~VlvvG~GgiG~e-vlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~ 281 (800)
+...+++|++++|.|+|.|+.|++ ++..|+.+|+ |.+. +
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv-----~~~~------------------~----------------- 135 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGI-----RIAP------------------S----------------- 135 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCC-----CccC------------------C-----------------
Confidence 356789999999999999999999 9999999999 4432 0
Q ss_pred hhCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHH-HHhhhcccccccEEEecccCcccce-EEEeCCcc
Q 003714 282 SINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARL-YVDQRCLYFQKPLLESGTLGAKCNT-QMVIPHLT 359 (800)
Q Consensus 282 ~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~-~l~~~c~~~~~pli~sgt~G~~G~v-~~~ip~~t 359 (800)
.+ ..++|+. -|-.+.+. .+|+.....+.|++-....|..+-+ .+++|+.|
T Consensus 136 --~a-------------------------~l~vVl~-~Dyl~p~L~~~n~~~l~~~~~~l~v~~~~~~~~~gp~~~p~~~ 187 (193)
T TIGR03882 136 --EA-------------------------DLTVVLT-DDYLDPELAAINQRALAAGRPWLLVKPGGVQPWIGPLFKPGKT 187 (193)
T ss_pred --CC-------------------------CEEEEEe-CCCCChHHHHHHHHHHHcCCceEEEEeCCceEEECCeecCCCC
Confidence 00 1122221 12223332 4666677777888777666666554 56789999
Q ss_pred cccCCC
Q 003714 360 ENYGAS 365 (800)
Q Consensus 360 ~~y~~~ 365 (800)
.|+.|.
T Consensus 188 ~c~~c~ 193 (193)
T TIGR03882 188 GCWHCL 193 (193)
T ss_pred cccccC
Confidence 999993
No 64
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.38 E-value=0.00044 Score=77.45 Aligned_cols=100 Identities=21% Similarity=0.321 Sum_probs=70.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHH-hhCCCceEEE
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAT-SINPRLNIEA 291 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~-~~np~v~i~~ 291 (800)
.+|+|+|||+||+.++.+||+.|. +.|+|.|. ++.. ++++. ..-+ ++++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d-----~~V~iAdR---------------------s~~~--~~~i~~~~~~--~v~~ 51 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD-----GEVTIADR---------------------SKEK--CARIAELIGG--KVEA 51 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC-----ceEEEEeC---------------------CHHH--HHHHHhhccc--ccee
Confidence 589999999999999999999998 89999872 2211 12222 2222 5556
Q ss_pred EecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccC
Q 003714 292 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLG 346 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G 346 (800)
+.-.+.... .+ .+.++++|+||+|+.....+ .+-+.|.+.++++++.....
T Consensus 52 ~~vD~~d~~-al--~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 52 LQVDAADVD-AL--VALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred EEecccChH-HH--HHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccCC
Confidence 555444321 11 25678889999999887776 56678999999999866544
No 65
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.12 E-value=0.0013 Score=71.48 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=58.4
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceE
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 289 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i 289 (800)
+..++|+|+|+||.|..++..|+..|+ ++|+|+|.+ ..|++.+++.+.+..+.+.+
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~-----~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~ 180 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGV-----ERLTIFDVD-------------------PARAAALADELNARFPAARA 180 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEE
Confidence 566799999999999999999999999 899999855 35888888888777776544
Q ss_pred EEEecccCCCcccccchhhccCccEEEEcc
Q 003714 290 EALQNRVGPETENVFDDTFWENITCVINAL 319 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~ 319 (800)
..... + .+....+|+||+|+
T Consensus 181 ~~~~~--------~--~~~~~~aDiVInaT 200 (284)
T PRK12549 181 TAGSD--------L--AAALAAADGLVHAT 200 (284)
T ss_pred Eeccc--------h--HhhhCCCCEEEECC
Confidence 33211 0 11246789999995
No 66
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.02 E-value=0.0017 Score=62.43 Aligned_cols=78 Identities=24% Similarity=0.390 Sum_probs=55.9
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCce
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 288 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~ 288 (800)
.|++++++|+|+||.|..+++.|+..|+ .+|+|+. |. ..|++.+++.+ +...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~-----~~i~i~n----------Rt---------~~ra~~l~~~~----~~~~ 60 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGA-----KEITIVN----------RT---------PERAEALAEEF----GGVN 60 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTS-----SEEEEEE----------SS---------HHHHHHHHHHH----TGCS
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCC-----CEEEEEE----------CC---------HHHHHHHHHHc----Cccc
Confidence 6889999999999999999999999999 7899975 32 34666666665 3333
Q ss_pred EEEEecccCCCcccccchhhccCccEEEEccCCH
Q 003714 289 IEALQNRVGPETENVFDDTFWENITCVINALDNV 322 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~ 322 (800)
+....- +++ ...+.++|+||+|+...
T Consensus 61 ~~~~~~------~~~--~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 61 IEAIPL------EDL--EEALQEADIVINATPSG 86 (135)
T ss_dssp EEEEEG------GGH--CHHHHTESEEEE-SSTT
T ss_pred cceeeH------HHH--HHHHhhCCeEEEecCCC
Confidence 444332 111 13467899999998654
No 67
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.88 E-value=0.0046 Score=63.73 Aligned_cols=106 Identities=17% Similarity=0.172 Sum_probs=68.4
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCce
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 288 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~ 288 (800)
.|++++|+|||.|.+|...++.|...|. +|+|++.+. .+. +.+.+.. -.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga------~V~VIs~~~------~~~---------------l~~l~~~----~~ 55 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGA------HIVVISPEL------TEN---------------LVKLVEE----GK 55 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC------eEEEEcCCC------CHH---------------HHHHHhC----CC
Confidence 4788999999999999999999999995 899986431 110 1111111 11
Q ss_pred EEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEEEeCC
Q 003714 289 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPH 357 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v~~~ip~ 357 (800)
+..... .+....+.++|+||.|+++.+.-..+...| ..+++ ++.....-.|. .++|.
T Consensus 56 i~~~~~--------~~~~~~l~~adlViaaT~d~elN~~i~~~a-~~~~l-vn~~d~~~~~~--f~~Pa 112 (202)
T PRK06718 56 IRWKQK--------EFEPSDIVDAFLVIAATNDPRVNEQVKEDL-PENAL-FNVITDAESGN--VVFPS 112 (202)
T ss_pred EEEEec--------CCChhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCc-EEECCCCccCe--EEEee
Confidence 222221 122344678999999999999988888999 45664 44443333333 34443
No 68
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=96.87 E-value=0.0035 Score=60.99 Aligned_cols=124 Identities=14% Similarity=0.203 Sum_probs=91.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEE
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 292 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~ 292 (800)
-.|.++|||-+|--++-+|... ..|+..+|.++|...|+..++-.--+- .-+|.+|++-+++ +.+-.+.-.+++.
T Consensus 19 GeV~l~G~GRLG~Rval~Lle~--HRGGperi~v~Dgqrve~dDiihrr~G--a~~GEyKv~Fi~r-l~~~~f~r~V~a~ 93 (217)
T COG4015 19 GEVSLIGCGRLGVRVALDLLEV--HRGGPERIYVFDGQRVEEDDIIHRRLG--AKVGEYKVDFIKR-LGRVHFGRRVEAF 93 (217)
T ss_pred ceEEEEeccchhHHHHHHHHHH--hcCCCeEEEEecCcccCchhhHHHHhC--CCcchhHHHHHHH-hCcCCCCceeecc
Confidence 4599999999999998887653 344448999999999999997432222 3689999998765 4555666789999
Q ss_pred ecccCCCcccccchhhccCccEEEEcc---CCHHHHHHHhhhcccccccEEEecccCccc
Q 003714 293 QNRVGPETENVFDDTFWENITCVINAL---DNVNARLYVDQRCLYFQKPLLESGTLGAKC 349 (800)
Q Consensus 293 ~~~v~~~~~~~~~~~f~~~~dvVi~a~---Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G 349 (800)
.+.++.++.+++ .+ |+|+-|. |....-..+.++|.+.++.-|. |.|..|
T Consensus 94 pE~it~dNlhll-----~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~Tis--T~GVFG 145 (217)
T COG4015 94 PENITKDNLHLL-----KG-DVVVICIAGGDTIPVTAAIINYAKERGIKTIS--TNGVFG 145 (217)
T ss_pred cccccccchhhh-----cC-CEEEEEecCCCcchhHHHHHHHHHHcCceEee--cCceee
Confidence 999988766543 33 7765544 6777778899999999987763 344443
No 69
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.43 E-value=0.0051 Score=56.36 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=61.6
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCce
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 288 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~ 288 (800)
.|++.+|+|||.|.+|..-++.|..+|. +++++..+. +... ..++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA------~v~vis~~~-~~~~----------------------------~~i~ 48 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGA------KVTVISPEI-EFSE----------------------------GLIQ 48 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTB------EEEEEESSE-HHHH----------------------------TSCE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECCch-hhhh----------------------------hHHH
Confidence 4788999999999999999999999996 999998765 1000 1122
Q ss_pred EEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEE
Q 003714 289 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLE 341 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~ 341 (800)
. ....+ . ..+.++++|+.|+++......+-+.|+.+++|+-.
T Consensus 49 ~--~~~~~--------~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~ 90 (103)
T PF13241_consen 49 L--IRREF--------E-EDLDGADLVFAATDDPELNEAIYADARARGILVNV 90 (103)
T ss_dssp E--EESS---------G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEE
T ss_pred H--HhhhH--------H-HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEE
Confidence 2 22211 1 23578999999999999999999999999997653
No 70
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.42 E-value=0.017 Score=57.14 Aligned_cols=85 Identities=16% Similarity=0.281 Sum_probs=60.7
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCce
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 288 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~ 288 (800)
.|++.+|+|||.|.+|...++.|...|. +++||+.+..+. +.++ +.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga------~V~VIsp~~~~~-------------------------l~~l-~~i- 56 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA------FVTVVSPEICKE-------------------------MKEL-PYI- 56 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCccCHH-------------------------HHhc-cCc-
Confidence 5788999999999999999999999996 999997553211 0010 111
Q ss_pred EEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccc
Q 003714 289 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF 335 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~ 335 (800)
+.... .|.+..+.++|+||.|+|+.+.-..+...|...
T Consensus 57 -~~~~~--------~~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 57 -TWKQK--------TFSNDDIKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred -EEEec--------ccChhcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 12221 122344678999999999999888888888763
No 71
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.34 E-value=0.016 Score=59.96 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=68.5
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceE
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 289 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i 289 (800)
|++++|+|||.|.+|..-++.|...|. +++|++.+.- +. +.+ +.+. -++
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga------~VtVvsp~~~------------------~~---l~~-l~~~---~~i 55 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA------QLRVIAEELE------------------SE---LTL-LAEQ---GGI 55 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC------EEEEEcCCCC------------------HH---HHH-HHHc---CCE
Confidence 678899999999999999999999996 9999986421 00 111 1111 134
Q ss_pred EEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEec
Q 003714 290 EALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 343 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sg 343 (800)
+.+..... ...+.++++||.|+|+.+....+-..|...++|+-.++
T Consensus 56 ~~~~~~~~--------~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d 101 (205)
T TIGR01470 56 TWLARCFD--------ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVD 101 (205)
T ss_pred EEEeCCCC--------HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 44443222 23467899999999999888889999999999875443
No 72
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.86 E-value=0.015 Score=65.81 Aligned_cols=97 Identities=19% Similarity=0.266 Sum_probs=62.7
Q ss_pred EEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEEec
Q 003714 215 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQN 294 (800)
Q Consensus 215 VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~~ 294 (800)
|+|+|+|.+|..+++.|+..+-. .++++.|.+ ..|++.+++.+ ...++....-
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~----~~v~va~r~-------------------~~~~~~~~~~~----~~~~~~~~~~ 53 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPF----EEVTVADRN-------------------PEKAERLAEKL----LGDRVEAVQV 53 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-----EEEEEESS-------------------HHHHHHHHT------TTTTEEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCC----CcEEEEECC-------------------HHHHHHHHhhc----cccceeEEEE
Confidence 78999999999999999999841 388888732 22333333332 2335556555
Q ss_pred ccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEe
Q 003714 295 RVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLES 342 (800)
Q Consensus 295 ~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~s 342 (800)
.+.... .+ ..+++++|+||+|+... .-..+-+.|.++++++++.
T Consensus 54 d~~~~~-~l--~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 54 DVNDPE-SL--AELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp -TTTHH-HH--HHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred ecCCHH-HH--HHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 554322 22 35789999999999777 5567889999999999993
No 73
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.79 E-value=0.032 Score=58.24 Aligned_cols=97 Identities=14% Similarity=0.181 Sum_probs=69.2
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCce
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 288 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~ 288 (800)
.+++.+|+|||.|.+|..=++.|...|. +|+||-++.- + ++ ..+++ .+.
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA------~VtVVap~i~------------~-el-----~~l~~-----~~~-- 70 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC------YVYILSKKFS------------K-EF-----LDLKK-----YGN-- 70 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCCCC------------H-HH-----HHHHh-----CCC--
Confidence 5678899999999999999999999996 8999865521 0 00 00110 222
Q ss_pred EEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecc
Q 003714 289 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGT 344 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt 344 (800)
|+.+...+ .+..+.++++||.|+|+.+.-..+...|...++++..+..
T Consensus 71 i~~~~r~~--------~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 71 LKLIKGNY--------DKEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred EEEEeCCC--------ChHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 44444322 2345688999999999999999999999999887765443
No 74
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.65 E-value=0.017 Score=62.83 Aligned_cols=168 Identities=15% Similarity=0.126 Sum_probs=87.2
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCC---cccccccCcccccHHHHHHHHHHhhCCCceE
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLS---RQFLFRDWNIGQAKSTVAASAATSINPRLNI 289 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLn---RQflf~~~dIG~~Ka~vaa~~l~~~np~v~i 289 (800)
.+|.|||+|.+|+.++.+|++.|. .++++|.+.=.....- ++.+-+-..-|+.....+...+.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l------ 73 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV------DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARL------ 73 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC------EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCe------
Confidence 489999999999999999999998 8999985532221100 0000000011221111111111111
Q ss_pred EEEecccCCCcccccchhhccCccEEEEcc-CCHHHHHHH----hhhcccccccEEEecccCcc-cceEEEeCCcccccC
Q 003714 290 EALQNRVGPETENVFDDTFWENITCVINAL-DNVNARLYV----DQRCLYFQKPLLESGTLGAK-CNTQMVIPHLTENYG 363 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~-Dn~~ar~~l----~~~c~~~~~pli~sgt~G~~-G~v~~~ip~~t~~y~ 363 (800)
+.. .+ + +-++++|+||.|+ ++.+.++.+ ...|-..+..+. +.|.+.- ........+...+..
T Consensus 74 ~~~--------~~-~--~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~-snTS~~~~~~la~~~~~~~r~~g 141 (286)
T PRK07819 74 RFT--------TD-L--GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLA-SNTSSIPIMKLAAATKRPGRVLG 141 (286)
T ss_pred Eee--------CC-H--HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEE-ECCCCCCHHHHHhhcCCCccEEE
Confidence 111 01 1 1257899999887 455666544 333323344343 4443321 111111111111222
Q ss_pred CC-CCCCCCCCCCccccCCCCCchhHHHHHHHHhhhhhccChh
Q 003714 364 AS-RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPA 405 (800)
Q Consensus 364 ~~-~~~~~~~~p~ctl~~fP~~~~h~i~wA~~~F~~~F~~~~~ 405 (800)
.. -+| ..-.|..++-.-+.+...++++++.++....+..|-
T Consensus 142 ~hf~~P-~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv 183 (286)
T PRK07819 142 LHFFNP-VPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVV 183 (286)
T ss_pred EecCCC-cccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCce
Confidence 21 122 223567788888899999999999987765655443
No 75
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.24 E-value=0.042 Score=59.69 Aligned_cols=78 Identities=21% Similarity=0.272 Sum_probs=52.5
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceE
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 289 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i 289 (800)
+.+++++|+|+||.|..++-.|+..|+ .+|+|+|.+ ..|++.+++.+....+...+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~-----~~i~i~nR~-------------------~~ka~~La~~~~~~~~~~~~ 180 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGV-----QKLQVADLD-------------------TSRAQALADVINNAVGREAV 180 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCC-----CEEEEEcCC-------------------HHHHHHHHHHHhhccCcceE
Confidence 456799999999999999999999999 899998633 23777777776544333222
Q ss_pred EEEecccCCCcccccchhhccCccEEEEcc
Q 003714 290 EALQNRVGPETENVFDDTFWENITCVINAL 319 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~ 319 (800)
.... . .. + ......+|+||||+
T Consensus 181 ~~~~--~----~~-~-~~~~~~~divINaT 202 (283)
T PRK14027 181 VGVD--A----RG-I-EDVIAAADGVVNAT 202 (283)
T ss_pred EecC--H----hH-H-HHHHhhcCEEEEcC
Confidence 2111 0 00 0 11235689999986
No 76
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.19 E-value=0.06 Score=59.47 Aligned_cols=166 Identities=14% Similarity=0.096 Sum_probs=89.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEE
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 292 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~ 292 (800)
++|.|||+|-+|+.++..++..|. .+++.|.+.=....+ +.+...+.+.+.+..+. ....
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~------~V~l~D~~~~~~~~~------------~~~i~~~~~~~~~~~~~--~~~~ 67 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL------DVVAWDPAPGAEAAL------------RANVANAWPALERQGLA--PGAS 67 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCCHHHHHHH------------HHHHHHHHHHHHHcCCC--hhhH
Confidence 479999999999999999999998 899998654111110 11111111111111110 0000
Q ss_pred ecccCCCcccccchhhccCccEEEEccC-CHHHHHHH----hhhcccccccEEEecccCcccc-eEEEeCCcccccCCCC
Q 003714 293 QNRVGPETENVFDDTFWENITCVINALD-NVNARLYV----DQRCLYFQKPLLESGTLGAKCN-TQMVIPHLTENYGASR 366 (800)
Q Consensus 293 ~~~v~~~~~~~~~~~f~~~~dvVi~a~D-n~~ar~~l----~~~c~~~~~pli~sgt~G~~G~-v~~~ip~~t~~y~~~~ 366 (800)
..++...+ + + .+-+++.|+|+.|+- +.+.++.+ .+.|.. +. +|.+.|.|..-. ..-...+-..|.....
T Consensus 68 ~~~i~~~~-~-l-~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~-~a-IlaSnTS~l~~s~la~~~~~p~R~~g~Hf 142 (321)
T PRK07066 68 PARLRFVA-T-I-EACVADADFIQESAPEREALKLELHERISRAAKP-DA-IIASSTSGLLPTDFYARATHPERCVVGHP 142 (321)
T ss_pred HhhceecC-C-H-HHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCC-Ce-EEEECCCccCHHHHHHhcCCcccEEEEec
Confidence 11111111 1 1 134689999998874 55566543 333322 22 788888775422 1111111122222222
Q ss_pred CCCCCCCCCccccCCCCCchhHHHHHHHHhhhhhccCh
Q 003714 367 DPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP 404 (800)
Q Consensus 367 ~~~~~~~p~ctl~~fP~~~~h~i~wA~~~F~~~F~~~~ 404 (800)
--|.--.|...+-.-|.+-.-+++++++++.. .+..|
T Consensus 143 fnP~~~~pLVEVv~g~~T~~e~~~~~~~f~~~-lGk~p 179 (321)
T PRK07066 143 FNPVYLLPLVEVLGGERTAPEAVDAAMGIYRA-LGMRP 179 (321)
T ss_pred CCccccCceEEEeCCCCCCHHHHHHHHHHHHH-cCCEe
Confidence 12233467777777788888899999998776 55444
No 77
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.07 E-value=0.043 Score=59.55 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=31.5
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEec
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
+++++++|+|+||.|..++..|+..|+ .+|+|++
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~-----~~i~I~n 156 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGV-----TDITVIN 156 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCC-----CeEEEEe
Confidence 567899999999999999999999999 8999985
No 78
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.04 E-value=0.058 Score=58.75 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=52.5
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceE
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 289 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i 289 (800)
+++++++|+|+||+|..++..|+..|+ .+|+|++.+. -...|++.+++.+.+..+.+.+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~-----~~V~I~~R~~----------------~~~~~a~~l~~~l~~~~~~~~~ 182 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGA-----KEITIFNIKD----------------DFYERAEQTAEKIKQEVPECIV 182 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCCc----------------hHHHHHHHHHHHHhhcCCCcee
Confidence 567889999999999999999999999 6799976310 0113566666666555554444
Q ss_pred EEEecccCCCcccccchhhccCccEEEEcc
Q 003714 290 EALQNRVGPETENVFDDTFWENITCVINAL 319 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~ 319 (800)
.... +.. .+. + ...+...|+||||+
T Consensus 183 ~~~d--~~~-~~~-~-~~~~~~~DilINaT 207 (289)
T PRK12548 183 NVYD--LND-TEK-L-KAEIASSDILVNAT 207 (289)
T ss_pred EEec--hhh-hhH-H-HhhhccCCEEEEeC
Confidence 3221 111 011 1 12234567777775
No 79
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=95.00 E-value=0.015 Score=51.77 Aligned_cols=49 Identities=29% Similarity=0.481 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHH-HHc-CCceeeeecCCceeecCCCcchhhcccCcHHHHH
Q 003714 713 DNPTLRELIQWL-KDK-GLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLA 761 (800)
Q Consensus 713 ~~~TL~~li~~~-~~~-~l~~~~i~~g~~~lY~~~~~~~~~~l~~~l~~l~ 761 (800)
..+||++|++.+ +++ |+..+.++.|..+||++-....+++++++|++|.
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elg 57 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELG 57 (87)
T ss_dssp TT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT
T ss_pred hhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcC
Confidence 589999999986 445 9999999999999999543334889999999994
No 80
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.88 E-value=0.059 Score=58.31 Aligned_cols=36 Identities=22% Similarity=0.493 Sum_probs=32.2
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.+.+++++|+|+||+|..+++.|+..|+ .+|+|++.
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~-----~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGV-----AEITIVNR 155 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCC-----CEEEEEeC
Confidence 3677899999999999999999999998 78999863
No 81
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=94.85 E-value=0.03 Score=53.03 Aligned_cols=99 Identities=22% Similarity=0.228 Sum_probs=58.4
Q ss_pred cEEEEcC-CchHHHHHHHHHH-hccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEE
Q 003714 214 KVFIVGS-GALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 291 (800)
Q Consensus 214 ~VlvvG~-GgiG~evlknLa~-~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~ 291 (800)
||.|+|+ |-+|.++++.+.. .|+ --.-.+|... |. + ...|+|. .+..-...+.+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~-----~lv~~v~~~~---~~-----~-~g~d~g~--------~~~~~~~~~~v-- 57 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGF-----ELVGAVDRKP---SA-----K-VGKDVGE--------LAGIGPLGVPV-- 57 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTE-----EEEEEEETTT---ST-----T-TTSBCHH--------HCTSST-SSBE--
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCc-----EEEEEEecCC---cc-----c-ccchhhh--------hhCcCCccccc--
Confidence 7999999 9999999999998 565 2234444322 00 0 0124442 11111111111
Q ss_pred EecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcc
Q 003714 292 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAK 348 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~ 348 (800)
..+. ++.+...|+||+.+ ++++-...-++|.++++|++ .||.|+.
T Consensus 58 -----~~~l-----~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~V-iGTTG~~ 102 (124)
T PF01113_consen 58 -----TDDL-----EELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLV-IGTTGFS 102 (124)
T ss_dssp -----BS-H-----HHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEE-EE-SSSH
T ss_pred -----chhH-----HHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEE-EECCCCC
Confidence 1111 24456699999998 78888888889999999999 6787874
No 82
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.77 E-value=0.042 Score=62.25 Aligned_cols=76 Identities=26% Similarity=0.354 Sum_probs=57.8
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCce
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 288 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~ 288 (800)
.|.+++++|||+|-+|.-++++|+..|+ ..|+|+ ||+ ..||+-+|+.+. ..
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~-----~~i~Ia----------NRT---------~erA~~La~~~~-----~~ 225 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGV-----KKITIA----------NRT---------LERAEELAKKLG-----AE 225 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCC-----CEEEEE----------cCC---------HHHHHHHHHHhC-----Ce
Confidence 4888999999999999999999999999 899995 665 347777777655 22
Q ss_pred EEEEecccCCCcccccchhhccCccEEEEccCCHH
Q 003714 289 IEALQNRVGPETENVFDDTFWENITCVINALDNVN 323 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ 323 (800)
+..+.. + .+++..+|+||.|+..+.
T Consensus 226 ~~~l~e--------l--~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 226 AVALEE--------L--LEALAEADVVISSTSAPH 250 (414)
T ss_pred eecHHH--------H--HHhhhhCCEEEEecCCCc
Confidence 333221 1 356789999999986653
No 83
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.56 E-value=0.039 Score=55.84 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=78.6
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCccc---ccccCcccccHHHHHHHHHHhhCCCceEE
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQF---LFRDWNIGQAKSTVAASAATSINPRLNIE 290 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQf---lf~~~dIG~~Ka~vaa~~l~~~np~v~i~ 290 (800)
+|.|||+|.+|..++-.+++.|. .++++|.+.=.....-+.+ +-...+-|+...+.+...+.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~------~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~------ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY------EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS------ 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS------EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE------
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC------cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc------
Confidence 68999999999999999999998 9999997543332211110 00000112222222333333222
Q ss_pred EEecccCCCcccccchhhccCccEEEEccC-CHHHHH----HHhhhcccccccEEEecccCcccc-eEEEeCCcccccCC
Q 003714 291 ALQNRVGPETENVFDDTFWENITCVINALD-NVNARL----YVDQRCLYFQKPLLESGTLGAKCN-TQMVIPHLTENYGA 364 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~D-n~~ar~----~l~~~c~~~~~pli~sgt~G~~G~-v~~~ip~~t~~y~~ 364 (800)
.. .. + .+. .+.|+||.|+- +.+.++ .+++.|.. + .++-+.|.++.=. +.-.+++-..+.+.
T Consensus 69 ~~-~d--------l-~~~-~~adlViEai~E~l~~K~~~~~~l~~~~~~-~-~ilasnTSsl~i~~la~~~~~p~R~ig~ 135 (180)
T PF02737_consen 69 FT-TD--------L-EEA-VDADLVIEAIPEDLELKQELFAELDEICPP-D-TILASNTSSLSISELAAALSRPERFIGM 135 (180)
T ss_dssp EE-SS--------G-GGG-CTESEEEE-S-SSHHHHHHHHHHHHCCS-T-T-SEEEE--SSS-HHHHHTTSSTGGGEEEE
T ss_pred cc-cC--------H-HHH-hhhheehhhccccHHHHHHHHHHHHHHhCC-C-ceEEecCCCCCHHHHHhccCcCceEEEE
Confidence 11 11 1 123 38999999974 555655 34445422 2 2454555443211 00001111112222
Q ss_pred CCCCCCCCCCCccccCCCCCchhHHHHHHHHhhhh
Q 003714 365 SRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGL 399 (800)
Q Consensus 365 ~~~~~~~~~p~ctl~~fP~~~~h~i~wA~~~F~~~ 399 (800)
.--.|....|...+-.-|.+..-+++++++++..+
T Consensus 136 Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~ 170 (180)
T PF02737_consen 136 HFFNPPHLMPLVEVVPGPKTSPETVDRVRALLRSL 170 (180)
T ss_dssp EE-SSTTT--EEEEEE-TTS-HHHHHHHHHHHHHT
T ss_pred ecccccccCceEEEeCCCCCCHHHHHHHHHHHHHC
Confidence 11112335788888888999999999999977654
No 84
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.53 E-value=0.045 Score=47.39 Aligned_cols=30 Identities=27% Similarity=0.628 Sum_probs=27.7
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
||+|||.|.+|+|++..|+..|. ++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~------~vtli~~ 30 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK------EVTLIER 30 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS------EEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHhCc------EEEEEec
Confidence 68999999999999999999997 8898874
No 85
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.46 E-value=0.057 Score=61.72 Aligned_cols=76 Identities=17% Similarity=0.331 Sum_probs=52.9
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCce
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 288 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~ 288 (800)
.+.+++|+|||+|+.|..++++|+..|+ .+|+|+. |. ..|++.+++.+. ...
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~-----~~I~V~n----------Rt---------~~ra~~La~~~~----~~~ 229 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAP-----KQIMLAN----------RT---------IEKAQKITSAFR----NAS 229 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCC-----CEEEEEC----------CC---------HHHHHHHHHHhc----CCe
Confidence 4678999999999999999999999999 7899873 32 235555555432 122
Q ss_pred EEEEecccCCCcccccchhhccCccEEEEccCCH
Q 003714 289 IEALQNRVGPETENVFDDTFWENITCVINALDNV 322 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~ 322 (800)
+..+. ++ .+.+.++|+||+|+-.+
T Consensus 230 ~~~~~--------~l--~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 230 AHYLS--------EL--PQLIKKADIIIAAVNVL 253 (414)
T ss_pred EecHH--------HH--HHHhccCCEEEECcCCC
Confidence 22211 11 24567899999998654
No 86
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.39 E-value=0.025 Score=58.07 Aligned_cols=37 Identities=46% Similarity=0.776 Sum_probs=35.1
Q ss_pred cchhHHHhhhhhhhhhhhcccCccccccceeeecccC
Q 003714 140 LNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVE 176 (800)
Q Consensus 140 l~PvaA~iGGi~aQEviK~it~k~~Pi~q~~~fd~~~ 176 (800)
+.|+++++|++.+||++|.++|+..|+.+++.||...
T Consensus 155 ~~p~~~~~~~~~~~e~~k~~~~~~~~l~~~~~~d~~~ 191 (197)
T cd01492 155 LAPVAAVVGGILAQDVINALSKRESPLNNFFVFDGET 191 (197)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECCC
Confidence 8999999999999999999999999999999999854
No 87
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.26 E-value=0.1 Score=60.19 Aligned_cols=36 Identities=33% Similarity=0.582 Sum_probs=32.4
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
+++++|+|+|+|++|.++++.|+..|. .++++|.+.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~------~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA------KVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeCCc
Confidence 567899999999999999999999997 899998654
No 88
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=94.25 E-value=0.1 Score=50.60 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=30.4
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+.+++|+|+|+|++|..+++.|+..|. ..++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~-----~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGA-----AKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEcC
Confidence 457899999999999999999999875 57888873
No 89
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.24 E-value=0.11 Score=56.70 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=40.8
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHh
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATS 282 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~ 282 (800)
+++++++|+|+||.+..++-.|+..|+ .+|+|++.+ .-...|++.+++.+..
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~-----~~i~i~nRt----------------~~~~~ka~~la~~~~~ 173 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGL-----KEIKLFNRR----------------DEFFDKALAFAQRVNE 173 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCC----------------ccHHHHHHHHHHHhhh
Confidence 566799999999999999999999999 899998621 0124577777777654
No 90
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.15 E-value=0.018 Score=58.06 Aligned_cols=92 Identities=17% Similarity=0.334 Sum_probs=53.9
Q ss_pred HHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 003714 208 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 287 (800)
Q Consensus 208 ~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v 287 (800)
..|.+++|.|+|+|.||.++++.|...|+ +++.+|...-...... +.|-.. ..+.++.+..
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~~~~~~~~~~--------~~~~~~-----~~l~ell~~a 92 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM------RVIGYDRSPKPEEGAD--------EFGVEY-----VSLDELLAQA 92 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT-------EEEEEESSCHHHHHHH--------HTTEEE-----SSHHHHHHH-
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc------eeEEecccCChhhhcc--------ccccee-----eehhhhcchh
Confidence 47899999999999999999999999998 8888886544322000 000000 0111111223
Q ss_pred eEEEEecccCCCcccccchhhccCcc---EEEEc
Q 003714 288 NIEALQNRVGPETENVFDDTFWENIT---CVINA 318 (800)
Q Consensus 288 ~i~~~~~~v~~~~~~~~~~~f~~~~d---vVi~a 318 (800)
.+....-..++++..+++.++++..- ++||+
T Consensus 93 Div~~~~plt~~T~~li~~~~l~~mk~ga~lvN~ 126 (178)
T PF02826_consen 93 DIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNV 126 (178)
T ss_dssp SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEES
T ss_pred hhhhhhhccccccceeeeeeeeeccccceEEEec
Confidence 45555555566666677666665443 55555
No 91
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.08 E-value=0.3 Score=52.77 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=29.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
.+|.|||+|-+|+.++..|+..|. .++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC------ceEEEeCC
Confidence 479999999999999999999997 88998854
No 92
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.88 E-value=0.081 Score=54.90 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=67.2
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc-ccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV-IEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 287 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~-Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v 287 (800)
.|.+++|+|||.|.+|..=++.|..+|. +++++-.+. -+..++ . . .+
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga------~v~Vvs~~~~~el~~~-------------------~---~-~~--- 56 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA------DVTVVSPEFEPELKAL-------------------I---E-EG--- 56 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC------EEEEEcCCccHHHHHH-------------------H---H-hc---
Confidence 4678899999999999999999999995 899986543 111111 1 1 11
Q ss_pred eEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEec
Q 003714 288 NIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 343 (800)
Q Consensus 288 ~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sg 343 (800)
++..+.. -|+.+.+..+++||-|+|+.+--..+.+.|..+++|+-.+.
T Consensus 57 ~i~~~~~--------~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D 104 (210)
T COG1648 57 KIKWIER--------EFDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVD 104 (210)
T ss_pred Ccchhhc--------ccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccC
Confidence 1222221 13334456699999999999999999999999998765433
No 93
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=93.71 E-value=0.15 Score=55.29 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=53.1
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEE
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 290 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~ 290 (800)
..++++|+|+||.+..++..|+..|+ .+|+|+. | -..|++.+++...+..+.+...
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~-----~~i~V~N----------R---------t~~ra~~La~~~~~~~~~~~~~ 180 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGA-----KRITVVN----------R---------TRERAEELADLFGELGAAVEAA 180 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEEe----------C---------CHHHHHHHHHHhhhcccccccc
Confidence 46889999999999999999999999 7999973 2 2467888888888777522222
Q ss_pred EEecccCCCcccccchhhccCccEEEEcc
Q 003714 291 ALQNRVGPETENVFDDTFWENITCVINAL 319 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~ 319 (800)
.... .+. ...+|+||||+
T Consensus 181 ~~~~-----~~~------~~~~dliINaT 198 (283)
T COG0169 181 ALAD-----LEG------LEEADLLINAT 198 (283)
T ss_pred cccc-----ccc------ccccCEEEECC
Confidence 2110 010 11689999996
No 94
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=93.47 E-value=0.049 Score=48.02 Aligned_cols=40 Identities=25% Similarity=0.459 Sum_probs=29.5
Q ss_pred ccccchhHHHhhhhhhhhhhhcccCcccccc-ceeeecccC
Q 003714 137 RAVLNPMAAMFGGIVGQEVVKACSGKFHPLY-QFFYFDSVE 176 (800)
Q Consensus 137 ~~el~PvaA~iGGi~aQEviK~it~k~~Pi~-q~~~fd~~~ 176 (800)
.+-+.|+++++|++.|+|+||.|+|...|+. .+++||..+
T Consensus 23 ~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~ 63 (84)
T PF05237_consen 23 AGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLN 63 (84)
T ss_dssp S-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTT
T ss_pred cccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCC
Confidence 3679999999999999999999999877765 566788754
No 95
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=93.43 E-value=0.13 Score=53.45 Aligned_cols=84 Identities=25% Similarity=0.382 Sum_probs=59.4
Q ss_pred HhcCcEEEEc-CCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCce
Q 003714 210 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 288 (800)
Q Consensus 210 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~ 288 (800)
+.+++++++| |||||-++.|.|..-|+ ..+.|.| +.|- -.+-..|+++||.++
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgi-----k~~~i~~--~~En-------------------~~a~akL~ai~p~~~ 56 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGI-----KVLVIDD--SEEN-------------------PEAIAKLQAINPSVS 56 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCc-----hheeehh--hhhC-------------------HHHHHHHhccCCCce
Confidence 4577888886 89999999999999999 4555543 1111 235667999999999
Q ss_pred EEEEecccCCCc--ccccch--hhccCccEEEEcc
Q 003714 289 IEALQNRVGPET--ENVFDD--TFWENITCVINAL 319 (800)
Q Consensus 289 i~~~~~~v~~~~--~~~~~~--~f~~~~dvVi~a~ 319 (800)
+..+.-+|.... +..|+. .-+...|++||..
T Consensus 57 v~F~~~DVt~~~~~~~~f~ki~~~fg~iDIlINgA 91 (261)
T KOG4169|consen 57 VIFIKCDVTNRGDLEAAFDKILATFGTIDILINGA 91 (261)
T ss_pred EEEEEeccccHHHHHHHHHHHHHHhCceEEEEccc
Confidence 999988887421 222321 2356789999865
No 96
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.25 E-value=0.054 Score=55.68 Aligned_cols=36 Identities=50% Similarity=0.958 Sum_probs=34.0
Q ss_pred hhHHHhhhhhhhhhhhcccCccccccceeeecccCC
Q 003714 142 PMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVES 177 (800)
Q Consensus 142 PvaA~iGGi~aQEviK~it~k~~Pi~q~~~fd~~~~ 177 (800)
|+++++|++.++|+||.++|+..|++++++||..+.
T Consensus 158 p~~~~~~~~~~~e~~k~l~~~~~~~~~~~~~d~~~~ 193 (198)
T cd01485 158 PIAAFLGGVVAQEAIKSISGKFTPLNNLYIYDGFES 193 (198)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECccc
Confidence 999999999999999999999999999999998654
No 97
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.24 E-value=0.35 Score=53.00 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=28.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
++|.|||+|.+|+.++..|+..|. .++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~------~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL------QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC------eEEEEECC
Confidence 479999999999999999999997 78888854
No 98
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.20 E-value=0.1 Score=57.38 Aligned_cols=42 Identities=33% Similarity=0.566 Sum_probs=34.7
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHhhhc
Q 003714 497 LQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKV 542 (800)
Q Consensus 497 l~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~ 542 (800)
++||.+|+.|++||.++|+|||..|||+.. +......++.++
T Consensus 210 ~~fdkDd~~~~~~v~~~a~lRa~~f~I~~~----~~~~~k~i~g~I 251 (312)
T cd01489 210 LTFDKDDQDALDFVAAAANLRSHVFGIPMK----SRFDIKQMAGNI 251 (312)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHHHcCCCCC----CHHHHHHHhccc
Confidence 789999999999999999999999999864 445555665554
No 99
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.11 E-value=0.083 Score=55.47 Aligned_cols=37 Identities=27% Similarity=0.522 Sum_probs=33.9
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCc--ceEEecCC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQG--KLTITDDD 250 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g--~i~ivD~D 250 (800)
.+++.+|+|+|+|+.|+.+++.|+..|+ . +|+|+|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~-----~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGA-----KPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCc-----CcceEEEEeCC
Confidence 4778899999999999999999999999 6 89999865
No 100
>PRK04148 hypothetical protein; Provisional
Probab=93.07 E-value=0.46 Score=45.75 Aligned_cols=92 Identities=12% Similarity=0.170 Sum_probs=66.6
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEE
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 290 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~ 290 (800)
++.++++||+| -|.++++.|+..|. .++.+|.+. ..++.+++. .+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~------~ViaIDi~~-------------------~aV~~a~~~--------~~~ 61 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF------DVIVIDINE-------------------KAVEKAKKL--------GLN 61 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC------EEEEEECCH-------------------HHHHHHHHh--------CCe
Confidence 34689999999 99999999999997 899987332 122223222 133
Q ss_pred EEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEE
Q 003714 291 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLE 341 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~ 341 (800)
+....+... +.++++++|+|-..--..+....+-+.+.+.+.+++-
T Consensus 62 ~v~dDlf~p-----~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i 107 (134)
T PRK04148 62 AFVDDLFNP-----NLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLII 107 (134)
T ss_pred EEECcCCCC-----CHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence 444433321 2456789999999988888888999999999998873
No 101
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=92.77 E-value=0.13 Score=56.83 Aligned_cols=91 Identities=21% Similarity=0.289 Sum_probs=61.1
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccc-cCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEK-SNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 287 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~-sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v 287 (800)
.|.+++|.|||+|.||+.+++-|...|+ ++...|.-.-.. ..... ......+.++-...
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm------~v~~~d~~~~~~~~~~~~--------------~~~~~~Ld~lL~~s 198 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGM------KVIGYDPYSPRERAGVDG--------------VVGVDSLDELLAEA 198 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCC------eEEEECCCCchhhhcccc--------------ceecccHHHHHhhC
Confidence 6789999999999999999999999999 888888522111 11000 01112233444456
Q ss_pred eEEEEecccCCCcccccchhhccCc---cEEEEcc
Q 003714 288 NIEALQNRVGPETENVFDDTFWENI---TCVINAL 319 (800)
Q Consensus 288 ~i~~~~~~v~~~~~~~~~~~f~~~~---dvVi~a~ 319 (800)
.|...+..++++|..+++.+.+... .++|||.
T Consensus 199 Div~lh~PlT~eT~g~i~~~~~a~MK~gailIN~a 233 (324)
T COG0111 199 DILTLHLPLTPETRGLINAEELAKMKPGAILINAA 233 (324)
T ss_pred CEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECC
Confidence 6777777788888888776666443 3677773
No 102
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.75 E-value=0.31 Score=53.51 Aligned_cols=33 Identities=30% Similarity=0.577 Sum_probs=29.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.||.|+|+|++|+.++..|+..|+. .+|.++|.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~----~ei~l~D~ 33 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIA----DELVLIDI 33 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC
Confidence 3799999999999999999999982 48999873
No 103
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.72 E-value=0.084 Score=57.28 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=29.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
++|.|||+|.+|+.++.+|+..|. .++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~------~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF------QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC------cEEEEeCCH
Confidence 479999999999999999999997 899998653
No 104
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=92.66 E-value=0.17 Score=50.70 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=30.0
Q ss_pred HHhcCcEEEEcCCch-HHHHHHHHHHhccccCCCcceEEec
Q 003714 209 KLEDAKVFIVGSGAL-GCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlvvG~Ggi-G~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
.|.+++|+|||+|.+ |..++++|...|+ ++++++
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~------~V~v~~ 75 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA------TVTVCH 75 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC------EEEEEE
Confidence 478899999999985 8889999999997 688876
No 105
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.58 E-value=0.34 Score=47.03 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=51.6
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc--eE
Q 003714 213 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL--NI 289 (800)
Q Consensus 213 ~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v--~i 289 (800)
.||.|||+ |.+|+.++-.|++.|++ .+|.|+| +...|++.-+.-+....+.. .+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~----~ei~L~D-------------------~~~~~~~g~a~Dl~~~~~~~~~~~ 57 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLA----DEIVLID-------------------INEDKAEGEALDLSHASAPLPSPV 57 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTS----SEEEEEE-------------------SSHHHHHHHHHHHHHHHHGSTEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC----CceEEec-------------------cCcccceeeehhhhhhhhhccccc
Confidence 37999999 99999999999999994 4699987 33336666666666553332 22
Q ss_pred EEEecccCCCcccccchhhccCccEEEEccCC
Q 003714 290 EALQNRVGPETENVFDDTFWENITCVINALDN 321 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn 321 (800)
..... . .+-+++.|+||.+...
T Consensus 58 ~i~~~-----~-----~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 58 RITSG-----D-----YEALKDADIVVITAGV 79 (141)
T ss_dssp EEEES-----S-----GGGGTTESEEEETTST
T ss_pred ccccc-----c-----ccccccccEEEEeccc
Confidence 22221 1 1235789999988644
No 106
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.54 E-value=0.75 Score=49.88 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=29.1
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
.+|.|||+|.+|+.++..|+..|. .++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~------~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF------DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC------eEEEEeCC
Confidence 479999999999999999999997 89999854
No 107
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=92.27 E-value=0.32 Score=45.73 Aligned_cols=109 Identities=18% Similarity=0.161 Sum_probs=61.0
Q ss_pred cEEEEc-CCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCc-ccccHHHHHHHHHHhhCCCceEEE
Q 003714 214 KVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWN-IGQAKSTVAASAATSINPRLNIEA 291 (800)
Q Consensus 214 ~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~d-IG~~Ka~vaa~~l~~~np~v~i~~ 291 (800)
||.||| .|-+|.++++.|+..-- -.++. ++..+. .|+.=+.... .......+..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~-----~e~~~---------------~~~~~~~~g~~~~~~~~----~~~~~~~~~~ 56 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPD-----FELVA---------------LVSSSRSAGKPLSEVFP----HPKGFEDLSV 56 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST-----EEEEE---------------EEESTTTTTSBHHHTTG----GGTTTEEEBE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCC-----ccEEE---------------eeeeccccCCeeehhcc----ccccccceeE
Confidence 699999 79999999999998321 22222 222223 5553222111 1111111111
Q ss_pred EecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecc-cCcccceEEEeCC
Q 003714 292 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGT-LGAKCNTQMVIPH 357 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt-~G~~G~v~~~ip~ 357 (800)
.. .+.+-+.+.|+|+.|+++-.++.+.... ...++.+|+.+. .-+...+...+|.
T Consensus 57 ~~----------~~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~~~R~~~~~~~~~pe 112 (121)
T PF01118_consen 57 ED----------ADPEELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLSGDFRLDDDVPYGLPE 112 (121)
T ss_dssp EE----------TSGHHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSSTTTTSTTSEEE-HH
T ss_pred ee----------cchhHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCHHHhCCCCCCEEeCC
Confidence 11 1223458999999999998887777766 777888887443 3333334445554
No 108
>PRK10637 cysG siroheme synthase; Provisional
Probab=92.20 E-value=0.44 Score=55.30 Aligned_cols=107 Identities=14% Similarity=0.141 Sum_probs=72.1
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCce
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 288 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~ 288 (800)
.|++++|+|||.|.+|..=++.|...|. +|+|+-++. .+ + +.++-..-+
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga------~v~visp~~------------~~-~------------~~~l~~~~~ 57 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA------RLTVNALAF------------IP-Q------------FTAWADAGM 57 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEcCCC------------CH-H------------HHHHHhCCC
Confidence 5788999999999999999999999996 899985431 11 0 111111123
Q ss_pred EEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEEEeCC
Q 003714 289 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPH 357 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v~~~ip~ 357 (800)
|+.+.... ....++++++||.|+|+.+.-..+.+.|...++++ +.......|. +++|.
T Consensus 58 i~~~~~~~--------~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lv-N~~d~~~~~~--f~~pa 115 (457)
T PRK10637 58 LTLVEGPF--------DESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFC-NVVDAPKAAS--FIMPS 115 (457)
T ss_pred EEEEeCCC--------ChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEE-EECCCcccCe--EEEee
Confidence 44443322 23456889999999999999999999999988864 4443333333 34443
No 109
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.03 E-value=0.53 Score=49.38 Aligned_cols=98 Identities=17% Similarity=0.296 Sum_probs=62.1
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEE
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 292 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~ 292 (800)
++++|+|+|-+|..+++.|+..|- .+++||.|. .+ +.+.+.. .....++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~------~Vv~Id~d~-------------------~~---~~~~~~~---~~~~~~v 49 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH------NVVLIDRDE-------------------ER---VEEFLAD---ELDTHVV 49 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC------ceEEEEcCH-------------------HH---HHHHhhh---hcceEEE
Confidence 479999999999999999999995 888888542 11 1111111 1223344
Q ss_pred ecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhccc-ccccEEEec
Q 003714 293 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY-FQKPLLESG 343 (800)
Q Consensus 293 ~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~-~~~pli~sg 343 (800)
...-+. ...+.+.-...+|+++.++++-..-..+...+.+ +++|-+.+-
T Consensus 50 ~gd~t~--~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar 99 (225)
T COG0569 50 IGDATD--EDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIAR 99 (225)
T ss_pred EecCCC--HHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 332221 2223333467899999999987666655555544 788776443
No 110
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.98 E-value=0.38 Score=53.13 Aligned_cols=75 Identities=21% Similarity=0.327 Sum_probs=50.3
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc-eEE
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL-NIE 290 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v-~i~ 290 (800)
..||.|||+|.+|+.++-.|+..|+. ..|.|+| +...|+...+.-+....|.. ++.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~----~el~L~D-------------------~~~~~~~g~~~Dl~~~~~~~~~~~ 62 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIA----DELVIID-------------------INKEKAEGDAMDLSHAVPFTSPTK 62 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEe-------------------CCCchhHHHHHHHHhhccccCCeE
Confidence 45899999999999999999999984 5799987 33445555566666554322 111
Q ss_pred EEecccCCCcccccchhhccCccEEEEcc
Q 003714 291 ALQNRVGPETENVFDDTFWENITCVINAL 319 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~ 319 (800)
.... + + +-+++.|+||.+.
T Consensus 63 i~~~-----~---~--~~~~~adivIita 81 (315)
T PRK00066 63 IYAG-----D---Y--SDCKDADLVVITA 81 (315)
T ss_pred EEeC-----C---H--HHhCCCCEEEEec
Confidence 1111 1 1 2258899988874
No 111
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.97 E-value=0.38 Score=52.86 Aligned_cols=71 Identities=13% Similarity=0.244 Sum_probs=49.0
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCC-----Cce
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINP-----RLN 288 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np-----~v~ 288 (800)
||.|||+|.+|+.++-.|+..|++ +.|.|+| +.+.|++..+.-|....+ +++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~----~elvL~D-------------------i~~~~a~g~a~DL~~~~~~~~~~~~~ 57 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF----SEIVLID-------------------VNEGVAEGEALDFHHATALTYSTNTK 57 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC----CEEEEEe-------------------CCcchhhHHHHHHHhhhccCCCCCEE
Confidence 689999999999999999999985 6899997 334455555555555433 233
Q ss_pred EEEEecccCCCcccccchhhccCccEEEEcc
Q 003714 289 IEALQNRVGPETENVFDDTFWENITCVINAL 319 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~ 319 (800)
+. .. + .+-+++.|+||-+.
T Consensus 58 i~--~~---~-------y~~~~~aDivvita 76 (307)
T cd05290 58 IR--AG---D-------YDDCADADIIVITA 76 (307)
T ss_pred EE--EC---C-------HHHhCCCCEEEECC
Confidence 33 21 1 12357889888774
No 112
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=91.79 E-value=0.42 Score=47.33 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=25.4
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEec
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
.+|.+||+|..|+.++++|+..|. .+++.|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~------~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY------EVTVYD 31 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT------EEEEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC------eEEeec
Confidence 479999999999999999999998 788876
No 113
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=91.74 E-value=0.15 Score=39.54 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=19.7
Q ss_pred hhcccchhhHHHHHHHHHHHHHH
Q 003714 442 KEKCEIFQDCITWARLKFEDYFS 464 (800)
Q Consensus 442 ~~~~~~~~~c~~~A~~~f~~~F~ 464 (800)
.+.|.+.+.||+||+.+|+.+|.
T Consensus 23 r~~P~~~~HcI~wAk~~f~~~F~ 45 (45)
T PF10585_consen 23 RNFPRTPEHCIEWAKDLFEELFG 45 (45)
T ss_dssp HTS-SSHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCchHHHHHHHHHHHHHhC
Confidence 45799999999999999999984
No 114
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=91.61 E-value=0.67 Score=51.06 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=32.3
Q ss_pred HHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEec
Q 003714 207 QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 207 q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
.+.|++++|.|||.|.+|..+++||..+|+ ++++.|
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~------~ViV~~ 46 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGV------EVVVGV 46 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcC------EEEEEE
Confidence 468999999999999999999999999998 676654
No 115
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.29 E-value=0.59 Score=51.74 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=30.7
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
++..||.|||+|.+|+.++-.++..|+ ..|+|+|-
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl-----~~i~LvDi 38 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNL-----GDVVLFDI 38 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-----CeEEEEeC
Confidence 455799999999999999999999998 46999984
No 116
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.26 E-value=0.7 Score=50.94 Aligned_cols=33 Identities=27% Similarity=0.488 Sum_probs=29.7
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEec
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
..||.|||+|.+|+.++-.|++.|++ ..|.|+|
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~----~el~LiD 35 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLA----DELVLVD 35 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEe
Confidence 35899999999999999999999984 5799997
No 117
>PRK06197 short chain dehydrogenase; Provisional
Probab=91.20 E-value=0.44 Score=51.77 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=30.6
Q ss_pred HHHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 208 KKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 208 ~~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
..+.+++|+|.|+ ||||.++++.|+..|. ++++++.+
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~------~vi~~~r~ 49 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGA------HVVLAVRN 49 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC------EEEEEeCC
Confidence 3567788999995 9999999999999997 67777643
No 118
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.06 E-value=1.9 Score=46.73 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=29.3
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
++|.|||+|.+|..++.+|+..|. .++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC------eEEEEeCC
Confidence 589999999999999999999997 88998864
No 119
>PRK05854 short chain dehydrogenase; Provisional
Probab=90.97 E-value=0.55 Score=51.49 Aligned_cols=34 Identities=18% Similarity=0.407 Sum_probs=28.8
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+++++++|.|+ ||||.++++.|+..|. ++++++.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~------~Vil~~R 46 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA------EVILPVR 46 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeC
Confidence 56678999995 8999999999999997 7777754
No 120
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.85 E-value=0.61 Score=47.40 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=51.8
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 287 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v 287 (800)
.+++++++|+|+ |++|..+++.|+..|. ++++++.+ ..|++.+++.+.+.. ..
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~------~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~ 78 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA------RVVLVGRD-------------------LERAQKAADSLRARF-GE 78 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEcCC-------------------HHHHHHHHHHHHhhc-CC
Confidence 457789999996 9999999999998874 78887532 235555665554322 23
Q ss_pred eEEEEecccCCCcccccchhhccCccEEEEccCC
Q 003714 288 NIEALQNRVGPETENVFDDTFWENITCVINALDN 321 (800)
Q Consensus 288 ~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn 321 (800)
.+..... . +.+++ .+.+.++|+||+|+-.
T Consensus 79 ~~~~~~~--~-~~~~~--~~~~~~~diVi~at~~ 107 (194)
T cd01078 79 GVGAVET--S-DDAAR--AAAIKGADVVFAAGAA 107 (194)
T ss_pred cEEEeeC--C-CHHHH--HHHHhcCCEEEECCCC
Confidence 3333211 1 11111 1345789999998754
No 121
>PLN02602 lactate dehydrogenase
Probab=90.77 E-value=0.68 Score=51.87 Aligned_cols=32 Identities=25% Similarity=0.502 Sum_probs=29.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEec
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
.||.|||+|.+|+.++-.|+..|++ +.|.|+|
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~----~el~LiD 69 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLA----DELALVD 69 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC----CEEEEEe
Confidence 5999999999999999999999985 6899997
No 122
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=90.68 E-value=1.2 Score=52.34 Aligned_cols=157 Identities=13% Similarity=0.123 Sum_probs=79.3
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCC--C---c
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINP--R---L 287 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np--~---v 287 (800)
.+|.|||+|.+|+.++.+|+..|. .+++.|.+.=....+.+ ....+.+.+..+.. . -
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~------~V~v~D~~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~~g 66 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI------DVAVFDPHPEAERIIGE------------VLANAERAYAMLTDAPLPPEG 66 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCCHHHHHHHHH------------HHHHHHHHHhhhccchhhhhh
Confidence 379999999999999999999998 89998864322111100 00000001110000 0 0
Q ss_pred eEEEEecccCCCcccccchhhccCccEEEEccCCH-HHHHH----HhhhcccccccEEEecccCcccc-eEEEeCCcccc
Q 003714 288 NIEALQNRVGPETENVFDDTFWENITCVINALDNV-NARLY----VDQRCLYFQKPLLESGTLGAKCN-TQMVIPHLTEN 361 (800)
Q Consensus 288 ~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~-~ar~~----l~~~c~~~~~pli~sgt~G~~G~-v~~~ip~~t~~ 361 (800)
++.. ..+ + .+.+++.|+|+.|+-.. +.+.. +...|. .-.+|.+.|.|..-. ..-..+....+
T Consensus 67 ~i~~-----~~~----~-~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~--~~~iI~SsTsgi~~s~l~~~~~~~~r~ 134 (495)
T PRK07531 67 RLTF-----CAS----L-AEAVAGADWIQESVPERLDLKRRVLAEIDAAAR--PDALIGSSTSGFLPSDLQEGMTHPERL 134 (495)
T ss_pred ceEe-----eCC----H-HHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCC--CCcEEEEcCCCCCHHHHHhhcCCcceE
Confidence 1111 111 1 13467899999887544 33432 233222 223788888885421 11112222223
Q ss_pred cCCCCCCCCCCCCCccccCCCCCchhHHHHHHHHhhhh
Q 003714 362 YGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGL 399 (800)
Q Consensus 362 y~~~~~~~~~~~p~ctl~~fP~~~~h~i~wA~~~F~~~ 399 (800)
+...+-.|....|...+-.=|..-...++.++.+|+.+
T Consensus 135 ~~~hP~nP~~~~~Lvevv~g~~t~~e~~~~~~~~~~~l 172 (495)
T PRK07531 135 FVAHPYNPVYLLPLVELVGGGKTSPETIRRAKEILREI 172 (495)
T ss_pred EEEecCCCcccCceEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 33222112223455455544555567788888877653
No 123
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.65 E-value=0.69 Score=50.24 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=29.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
.+|.|||+|.+|+.++..|+..|. .++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~------~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY------DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC------eEEEEeCCH
Confidence 579999999999999999999997 799998654
No 124
>PRK07063 short chain dehydrogenase; Provisional
Probab=90.61 E-value=0.75 Score=48.43 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=43.3
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 287 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v 287 (800)
++++++++|.|+ ||||.++++.|+..|. +++++|.+ ..+.+.+++.+...++..
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~------~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~ 58 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA------AVALADLD-------------------AALAERAAAAIARDVAGA 58 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC-------------------HHHHHHHHHHHHhccCCc
Confidence 367889999996 8999999999999997 78877621 234444555555444444
Q ss_pred eEEEEecccC
Q 003714 288 NIEALQNRVG 297 (800)
Q Consensus 288 ~i~~~~~~v~ 297 (800)
++..+..++.
T Consensus 59 ~~~~~~~Dl~ 68 (260)
T PRK07063 59 RVLAVPADVT 68 (260)
T ss_pred eEEEEEccCC
Confidence 5555554443
No 125
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=90.59 E-value=0.58 Score=59.12 Aligned_cols=104 Identities=15% Similarity=0.223 Sum_probs=62.5
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcccc-----CC---CcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHh
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGVSC-----GN---QGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATS 282 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv~~-----~~---~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~ 282 (800)
+.++|+|+|||.+|..+++.|+..+-.. +. .-.++|.|.+ ..+++.+++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~-------------------~~~a~~la~~--- 625 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY-------------------LKDAKETVEG--- 625 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC-------------------HHHHHHHHHh---
Confidence 4679999999999999999999864210 00 0024555422 2334433332
Q ss_pred hCCCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEec
Q 003714 283 INPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 343 (800)
Q Consensus 283 ~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sg 343 (800)
.|+++ +..-.+.+ .+.+ ..++++.|+||+|+-.. .-..+...|..+++.++...
T Consensus 626 -~~~~~--~v~lDv~D-~e~L--~~~v~~~DaVIsalP~~-~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 626 -IENAE--AVQLDVSD-SESL--LKYVSQVDVVISLLPAS-CHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred -cCCCc--eEEeecCC-HHHH--HHhhcCCCEEEECCCch-hhHHHHHHHHHcCCCEEECc
Confidence 23432 22222222 1222 23457899999998663 34567788999999988654
No 126
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=90.59 E-value=0.46 Score=46.82 Aligned_cols=104 Identities=16% Similarity=0.219 Sum_probs=57.1
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEEe
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 293 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~ 293 (800)
||.|+|+|..|+.++..|+..|. ++++.+.|.=....++.+ +.-....|++++.. .
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~------~V~l~~~~~~~~~~i~~~-----------------~~n~~~~~~~~l~~-~ 56 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH------EVTLWGRDEEQIEEINET-----------------RQNPKYLPGIKLPE-N 56 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE------EEEEETSCHHHHHHHHHH-----------------TSETTTSTTSBEET-T
T ss_pred CEEEECcCHHHHHHHHHHHHcCC------EEEEEeccHHHHHHHHHh-----------------CCCCCCCCCcccCc-c
Confidence 69999999999999999999995 888877654111111110 00001112222111 0
Q ss_pred cccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcc--cccccEEEecccCc
Q 003714 294 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCL--YFQKPLLESGTLGA 347 (800)
Q Consensus 294 ~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~--~~~~pli~sgt~G~ 347 (800)
-.++.+- .+.+++.|+|+-++-...-|..+.+... ..+.+++ .-+-|+
T Consensus 57 i~~t~dl-----~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii-~~~KG~ 106 (157)
T PF01210_consen 57 IKATTDL-----EEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIII-SATKGF 106 (157)
T ss_dssp EEEESSH-----HHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEE-ETS-SE
T ss_pred cccccCH-----HHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEE-EecCCc
Confidence 0111111 2456889999999988888877777664 3344555 344454
No 127
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=90.51 E-value=0.54 Score=51.77 Aligned_cols=88 Identities=16% Similarity=0.204 Sum_probs=58.4
Q ss_pred HHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 003714 208 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 287 (800)
Q Consensus 208 ~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v 287 (800)
..|.+++|.|||.|.||.++++.+...|. +|..+|.-... + +.|-.. ..+.++-+..
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm------~V~~~d~~~~~-----~-------~~~~~~-----~~l~ell~~s 197 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGA------KVVYYSTSGKN-----K-------NEEYER-----VSLEELLKTS 197 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCC------EEEEECCCccc-----c-------ccCcee-----ecHHHHhhcC
Confidence 36889999999999999999999987776 78888862110 0 111111 1244444556
Q ss_pred eEEEEecccCCCcccccchhhccCc---cEEEEc
Q 003714 288 NIEALQNRVGPETENVFDDTFWENI---TCVINA 318 (800)
Q Consensus 288 ~i~~~~~~v~~~~~~~~~~~f~~~~---dvVi~a 318 (800)
.+..++-..+++|..+++.+.++.. -++||+
T Consensus 198 Dvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~ 231 (311)
T PRK08410 198 DIISIHAPLNEKTKNLIAYKELKLLKDGAILINV 231 (311)
T ss_pred CEEEEeCCCCchhhcccCHHHHHhCCCCeEEEEC
Confidence 6777777777777777777766543 355665
No 128
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=90.50 E-value=0.94 Score=53.01 Aligned_cols=89 Identities=17% Similarity=0.268 Sum_probs=67.6
Q ss_pred HHHHHHHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHh
Q 003714 204 AKLQKKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATS 282 (800)
Q Consensus 204 ~~~q~~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~ 282 (800)
....+-+.+++|+|-|+ |++|+|+++.++..+. .+|.+.|.| ..|-......+++
T Consensus 242 ~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p-----~~i~l~~~~-------------------E~~~~~i~~el~~ 297 (588)
T COG1086 242 ELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNP-----KEIILFSRD-------------------EYKLYLIDMELRE 297 (588)
T ss_pred HHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCC-----CEEEEecCc-------------------hHHHHHHHHHHHh
Confidence 45567899999999997 6899999999999998 899998644 4455566777888
Q ss_pred hCCCceEEEEecccCCCcccccchhhccC--ccEEEEcc
Q 003714 283 INPRLNIEALQNRVGPETENVFDDTFWEN--ITCVINAL 319 (800)
Q Consensus 283 ~np~v~i~~~~~~v~~~~~~~~~~~f~~~--~dvVi~a~ 319 (800)
..|..++.++-..|.+... + ...+++ .|+|+.|.
T Consensus 298 ~~~~~~~~~~igdVrD~~~-~--~~~~~~~kvd~VfHAA 333 (588)
T COG1086 298 KFPELKLRFYIGDVRDRDR-V--ERAMEGHKVDIVFHAA 333 (588)
T ss_pred hCCCcceEEEecccccHHH-H--HHHHhcCCCceEEEhh
Confidence 8888889998887764321 1 123455 78888773
No 129
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=90.35 E-value=0.81 Score=49.14 Aligned_cols=63 Identities=19% Similarity=0.356 Sum_probs=50.1
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCce
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 288 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~ 288 (800)
+...+++|-|| ||||-|+++.||+-|. +++++- |. +.|-+.+++.+.... .++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~------~liLva---------------R~----~~kL~~la~~l~~~~-~v~ 57 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY------NLILVA---------------RR----EDKLEALAKELEDKT-GVE 57 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC------EEEEEe---------------Cc----HHHHHHHHHHHHHhh-Cce
Confidence 45678999996 8999999999999997 788763 22 557778888888877 778
Q ss_pred EEEEecccCC
Q 003714 289 IEALQNRVGP 298 (800)
Q Consensus 289 i~~~~~~v~~ 298 (800)
++.+.-++++
T Consensus 58 v~vi~~DLs~ 67 (265)
T COG0300 58 VEVIPADLSD 67 (265)
T ss_pred EEEEECcCCC
Confidence 8888776664
No 130
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=90.19 E-value=0.31 Score=53.66 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=30.9
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.+..++|.|||.|.||.++++.|...|+ ++..+|.
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~------~V~~~~~ 167 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGF------PLRCWSR 167 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeC
Confidence 4678899999999999999999999998 7777764
No 131
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=90.18 E-value=0.8 Score=50.16 Aligned_cols=72 Identities=17% Similarity=0.237 Sum_probs=49.3
Q ss_pred EEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCC---ceEEE
Q 003714 215 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR---LNIEA 291 (800)
Q Consensus 215 VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~---v~i~~ 291 (800)
|.|||+|++|+.++-.|+..|++ .+|+++|. -+.|+...+..+....+. +++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~----~el~l~D~-------------------~~~~~~g~~~DL~~~~~~~~~~~i~~ 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLA----SELVLVDV-------------------NEEKAKGDALDLSHASAFLATGTIVR 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC-------------------CccHHHHHHHhHHHhccccCCCeEEE
Confidence 57999999999999999999984 67999973 344555666666665543 22221
Q ss_pred EecccCCCcccccchhhccCccEEEEccC
Q 003714 292 LQNRVGPETENVFDDTFWENITCVINALD 320 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~D 320 (800)
..+ + +-++++|+||.+..
T Consensus 58 -----~~~----~--~~l~~aDiVIitag 75 (300)
T cd00300 58 -----GGD----Y--ADAADADIVVITAG 75 (300)
T ss_pred -----CCC----H--HHhCCCCEEEEcCC
Confidence 111 1 23578999998864
No 132
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.10 E-value=0.9 Score=52.13 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=31.6
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+.+++|+|+|+|.+|..+++.|..+|. +++++|.|
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga------~ViV~d~d 244 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA------RVIVTEVD 244 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCC
Confidence 578899999999999999999999997 78888754
No 133
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=90.07 E-value=0.99 Score=48.30 Aligned_cols=92 Identities=24% Similarity=0.307 Sum_probs=57.0
Q ss_pred CcEEEEcC-CchHHHHHHHHHHh-ccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEE
Q 003714 213 AKVFIVGS-GALGCEFLKNVALM-GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 290 (800)
Q Consensus 213 ~~VlvvG~-GgiG~evlknLa~~-Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~ 290 (800)
.||.|+|| |.+|..+++.+... ++ --..++|.+. +...+. ....+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~-----elvav~d~~~---~~~~~~------------------------~~~~i~ 49 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDL-----ELVAAVDRPG---SPLVGQ------------------------GALGVA 49 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCC-----EEEEEEecCC---cccccc------------------------CCCCcc
Confidence 48999999 99999999988764 45 2334455432 111000 001111
Q ss_pred EEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcc
Q 003714 291 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAK 348 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~ 348 (800)
.+ .+ + ++.+..+|+||+++ ++.+-..+-..|.++++|++ .|+.|+.
T Consensus 50 ~~-----~d----l-~~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vv-igttG~s 95 (257)
T PRK00048 50 IT-----DD----L-EAVLADADVLIDFT-TPEATLENLEFALEHGKPLV-IGTTGFT 95 (257)
T ss_pred cc-----CC----H-HHhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEE-EECCCCC
Confidence 11 11 1 12345789999998 55666778889999999999 4477755
No 134
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=89.97 E-value=0.28 Score=53.61 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=27.7
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+|.|||+|.+|+.++.+|+..|. .+++.|.+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~------~V~~~dr~ 32 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH------DCVGYDHD 32 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC------EEEEEECC
Confidence 69999999999999999999997 77887754
No 135
>PRK06487 glycerate dehydrogenase; Provisional
Probab=89.95 E-value=0.57 Score=51.77 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=31.1
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.|.+++|.|||.|.||.++++.|...|+ ++..+|.
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm------~V~~~~~ 179 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGM------RVLIGQL 179 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCC------EEEEECC
Confidence 5899999999999999999999988887 7777764
No 136
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=89.92 E-value=0.54 Score=45.45 Aligned_cols=29 Identities=28% Similarity=0.618 Sum_probs=25.7
Q ss_pred EEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 215 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 215 VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
|+|+|+|++|+-++-.|+..|. .+++++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~------~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH------DVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCC------ceEEEEc
Confidence 7899999999999999999887 7787753
No 137
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.82 E-value=0.5 Score=52.56 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=31.7
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.|.+++|.|||.|.||.++++.|...|. ++..+|.
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~------~V~~~d~ 181 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGM------RILYYSR 181 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5889999999999999999999998887 7888875
No 138
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.78 E-value=0.57 Score=50.90 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=30.4
Q ss_pred HHhcCcEEEEcCCc-hHHHHHHHHHHhccccCCCcceEEec
Q 003714 209 KLEDAKVFIVGSGA-LGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlvvG~Gg-iG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
.+++++|+|+|+|+ +|..++..|...|. .+++++
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga------tVtv~~ 190 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA------TVTICH 190 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC------EEEEEe
Confidence 57888999999999 99999999999886 788875
No 139
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.72 E-value=0.36 Score=59.10 Aligned_cols=157 Identities=13% Similarity=0.130 Sum_probs=86.1
Q ss_pred CcEEEEcCCchHHHHHHHHH-HhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhC---CC--
Q 003714 213 AKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSIN---PR-- 286 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa-~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~n---p~-- 286 (800)
++|.|||+|-+|+.++-.++ ..|+ .++++|.+. ..+.| ++.++.-..+.+.+.. +.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~------~V~l~d~~~---~~l~~---------~~~~~~~~l~~~~~~~~~~~~~~ 371 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL------PVRIKDINP---QGINH---------ALKYSWDLLDKKVKRRHLKPSER 371 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC------eEEEEeCCH---HHHHH---------HHHHHHHHHHHHHHcCCCCHHHH
Confidence 67999999999999999999 8898 899999653 11111 1111111111111110 00
Q ss_pred ----ceEEEEecccCCCcccccchhhccCccEEEEcc-CCHHHHHHHhhhcccccc--cEEEecccCcccc-eEEEeCCc
Q 003714 287 ----LNIEALQNRVGPETENVFDDTFWENITCVINAL-DNVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHL 358 (800)
Q Consensus 287 ----v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~-Dn~~ar~~l~~~c~~~~~--pli~sgt~G~~G~-v~~~ip~~ 358 (800)
-+|+... + + +-++++|+||.|+ .+.+.++.+-...-.+-. .++.+.|.+..=. +.-...+.
T Consensus 372 ~~~~~~i~~~~--------~-~--~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p 440 (708)
T PRK11154 372 DKQMALISGTT--------D-Y--RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARP 440 (708)
T ss_pred HHHHhcEEEeC--------C-h--HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcc
Confidence 0122111 1 1 1247899999986 566666654433332222 3666666664311 11111111
Q ss_pred ccccCCCCCCCCCCCCCccccCCCCCchhHHHHHHHHhhh
Q 003714 359 TENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEG 398 (800)
Q Consensus 359 t~~y~~~~~~~~~~~p~ctl~~fP~~~~h~i~wA~~~F~~ 398 (800)
..+.+..--.|....|.+.+-.-|.+-..++.++..+...
T Consensus 441 ~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~ 480 (708)
T PRK11154 441 EQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKK 480 (708)
T ss_pred cceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 2222222222333568888888899999999998887654
No 140
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.54 E-value=0.95 Score=49.63 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=29.5
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
..+|.|+|+|.+|+.++++|+..|. .+++.|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~------~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH------RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 3589999999999999999999996 78888865
No 141
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=89.47 E-value=0.54 Score=53.10 Aligned_cols=88 Identities=20% Similarity=0.315 Sum_probs=56.7
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCce
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 288 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~ 288 (800)
.|.+++|.|||+|.||..+++.|...|+ ++...|.-.-+. .+.+. ...+.++-+...
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~------~V~~~dp~~~~~-----------~~~~~------~~~L~ell~~sD 169 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI------KTLLCDPPRADR-----------GDEGD------FRSLDELVQEAD 169 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECCccccc-----------ccccc------cCCHHHHHhhCC
Confidence 5889999999999999999999999998 888888532110 00010 012333333455
Q ss_pred EEEEecccCCC----cccccchhhccCc---cEEEEcc
Q 003714 289 IEALQNRVGPE----TENVFDDTFWENI---TCVINAL 319 (800)
Q Consensus 289 i~~~~~~v~~~----~~~~~~~~f~~~~---dvVi~a~ 319 (800)
|..++..++++ +..+++.++++.. -++||+.
T Consensus 170 iI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~a 207 (378)
T PRK15438 170 ILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINAC 207 (378)
T ss_pred EEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECC
Confidence 66666656553 6667777766543 4777764
No 142
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=89.31 E-value=0.44 Score=41.93 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=32.2
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.+..++++|+|+|++|..++..|...|. ..+.+.|.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~-----~~v~v~~r 55 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGG-----KKVVLCDR 55 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcC
Confidence 3678899999999999999999999975 68999887
No 143
>PRK07062 short chain dehydrogenase; Provisional
Probab=89.16 E-value=1.2 Score=47.09 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=43.7
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCce
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 288 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~ 288 (800)
++++.++|.|+ ||||.++++.|+..|. ++++++.+. .+.+.+++.+.+..+..+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~------~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~ 60 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA------SVAICGRDE-------------------ERLASAEARLREKFPGAR 60 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC------eEEEEeCCH-------------------HHHHHHHHHHHhhCCCce
Confidence 56778999997 7999999999999997 788876432 233444555555555556
Q ss_pred EEEEecccC
Q 003714 289 IEALQNRVG 297 (800)
Q Consensus 289 i~~~~~~v~ 297 (800)
+..+..++.
T Consensus 61 ~~~~~~D~~ 69 (265)
T PRK07062 61 LLAARCDVL 69 (265)
T ss_pred EEEEEecCC
Confidence 655554443
No 144
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=89.11 E-value=1.4 Score=39.04 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=52.8
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEe-cCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEE
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTIT-DDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 292 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iv-D~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~ 292 (800)
||.+||+|.+|..+++.|+..|+ ...+|.++ +. ...|+.-+++ ..+ +.+...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~---~~~~v~~~~~r-------------------~~~~~~~~~~----~~~-~~~~~~ 53 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI---KPHEVIIVSSR-------------------SPEKAAELAK----EYG-VQATAD 53 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS----GGEEEEEEES-------------------SHHHHHHHHH----HCT-TEEESE
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CceeEEeeccC-------------------cHHHHHHHHH----hhc-cccccC
Confidence 68999999999999999999996 12466643 31 1223222222 222 111110
Q ss_pred ecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhh-cccccccEEE
Q 003714 293 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQR-CLYFQKPLLE 341 (800)
Q Consensus 293 ~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~-c~~~~~pli~ 341 (800)
+ +.+..+..|+||.|+........+... ....++-+|+
T Consensus 54 ------~-----~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis 92 (96)
T PF03807_consen 54 ------D-----NEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVIS 92 (96)
T ss_dssp ------E-----HHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred ------C-----hHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEE
Confidence 0 124567899999999888877766666 2334454554
No 145
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=88.93 E-value=0.66 Score=50.87 Aligned_cols=108 Identities=22% Similarity=0.297 Sum_probs=62.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCccc--------ccCCCcccccccCcccccHHHHHHHHHHhhC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE--------KSNLSRQFLFRDWNIGQAKSTVAASAATSIN 284 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie--------~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~n 284 (800)
++|.|||+|-.|+-++..+|..|+ .+++.|...=. ..+|.|+. .-|+-+.+.+.+.+.++.
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~------~V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~ 72 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY------DVVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARIT 72 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC------ceEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhcc
Confidence 589999999999999999999777 89999865100 01122211 113333333333333333
Q ss_pred CCceEEEEecccCCCcccccchhhccCccEEEEcc-CCHHHHHHHhhhcccccc--cEEEecccCcc
Q 003714 285 PRLNIEALQNRVGPETENVFDDTFWENITCVINAL-DNVNARLYVDQRCLYFQK--PLLESGTLGAK 348 (800)
Q Consensus 285 p~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~-Dn~~ar~~l~~~c~~~~~--pli~sgt~G~~ 348 (800)
+... ..-++++|+||.|. -+.+.++.+-+..-.+-. .++.|.|.+..
T Consensus 73 ~~~~-----------------~~~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~ 122 (307)
T COG1250 73 PTTD-----------------LAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLS 122 (307)
T ss_pred ccCc-----------------hhHhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCC
Confidence 2211 11357899999887 466666544433322222 36777777654
No 146
>PRK09242 tropinone reductase; Provisional
Probab=88.77 E-value=1.3 Score=46.60 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=45.8
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 287 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v 287 (800)
.+++++++|+|+ |+||.++++.|+..|. ++++++.+ ..+.+.+.+.+...+|..
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~------~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~ 60 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA------DVLIVARD-------------------ADALAQARDELAEEFPER 60 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeCC-------------------HHHHHHHHHHHHhhCCCC
Confidence 356789999996 8999999999999997 78887632 123344555565566666
Q ss_pred eEEEEecccC
Q 003714 288 NIEALQNRVG 297 (800)
Q Consensus 288 ~i~~~~~~v~ 297 (800)
++..+..++.
T Consensus 61 ~~~~~~~Dl~ 70 (257)
T PRK09242 61 EVHGLAADVS 70 (257)
T ss_pred eEEEEECCCC
Confidence 7776665554
No 147
>PRK06932 glycerate dehydrogenase; Provisional
Probab=88.70 E-value=0.6 Score=51.51 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=30.7
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.|..++|.|||.|.||.++++.|...|+ ++..+|.
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~------~V~~~~~ 178 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGM------KVLYAEH 178 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCC------EEEEECC
Confidence 6899999999999999999999988887 6777663
No 148
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=88.61 E-value=1.1 Score=42.73 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=22.3
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcc
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGV 236 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv 236 (800)
...||.|||+|-+|..+++.|...|.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~ 34 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH 34 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC
Confidence 45689999999999999999999997
No 149
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=88.56 E-value=0.65 Score=52.59 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=32.1
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.|.+++|.|||+|.||..+++.|...|+ ++.+.|.
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~------~V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGW------KVLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5788999999999999999999999998 8888885
No 150
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.39 E-value=0.52 Score=57.82 Aligned_cols=168 Identities=17% Similarity=0.169 Sum_probs=85.5
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccC----CCcccccccCcccccHHHHHHHHHHhhCCCce
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSN----LSRQFLFRDWNIGQAKSTVAASAATSINPRLN 288 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sN----LnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~ 288 (800)
.+|.|||+|.+|+.++..+++.|. .++++|.+.=.... +.+. +-+...-|+.....+.+.+.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~------~V~l~d~~~~~l~~~~~~~~~~-l~~~~~~g~~~~~~~~~~~~~------ 380 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV------PVIMKDINQKALDLGMTEAAKL-LNKQVERGKIDGAKMAGVLSS------ 380 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC------eEEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCChhhHHHHHhC------
Confidence 579999999999999999999998 99999965322110 0000 000001122111111222211
Q ss_pred EEEEecccCCCcccccchhhccCccEEEEcc-CCHHHHHHHhhhccccc--ccEEEecccCccc-ceEEEeCCcccccCC
Q 003714 289 IEALQNRVGPETENVFDDTFWENITCVINAL-DNVNARLYVDQRCLYFQ--KPLLESGTLGAKC-NTQMVIPHLTENYGA 364 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~-Dn~~ar~~l~~~c~~~~--~pli~sgt~G~~G-~v~~~ip~~t~~y~~ 364 (800)
|+... + + +-+++.|+||.|+ .+.+.++.+-...-..- -.++.+.|.++.= .+.-...+...+.+.
T Consensus 381 i~~~~--------~-~--~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~ 449 (715)
T PRK11730 381 IRPTL--------D-Y--AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGM 449 (715)
T ss_pred eEEeC--------C-H--HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEE
Confidence 11111 1 1 1257899999986 56666654433322221 1356666655421 010011111112222
Q ss_pred CCCCCCCCCCCccccCCCCCchhHHHHHHHHhhhhhccChh
Q 003714 365 SRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPA 405 (800)
Q Consensus 365 ~~~~~~~~~p~ctl~~fP~~~~h~i~wA~~~F~~~F~~~~~ 405 (800)
.---|....|...+-.-+.+-..++.++.+++.. .+..|-
T Consensus 450 Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~-lgk~pv 489 (715)
T PRK11730 450 HFFNPVHRMPLVEVIRGEKTSDETIATVVAYASK-MGKTPI 489 (715)
T ss_pred ecCCcccccceEEeeCCCCCCHHHHHHHHHHHHH-hCCceE
Confidence 1111223456777777788888888888886654 344443
No 151
>PRK06436 glycerate dehydrogenase; Provisional
Probab=88.36 E-value=0.39 Score=52.73 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=32.3
Q ss_pred HHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 208 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 208 ~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
..|.+++|.|||.|.||.++++.|...|+ +++.+|..
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~------~V~~~~r~ 154 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGM------NIYAYTRS 154 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECCC
Confidence 36889999999999999999998887787 78888853
No 152
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=88.22 E-value=0.63 Score=50.88 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=64.0
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhh-CCCceEEEE
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSI-NPRLNIEAL 292 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~-np~v~i~~~ 292 (800)
+|.+||+|.+|..++++|+..|. .+++.|.+.-....+. +.|-.-+....+.+... ++++-+...
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~------~v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH------EVVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC------eEEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEe
Confidence 69999999999999999999997 7888886531111110 01111111122222222 345555544
Q ss_pred ecccCCCcccccc--hhhccCccEEEEccC-CHHHHHHHhhhcccccccEEEecccCc
Q 003714 293 QNRVGPETENVFD--DTFWENITCVINALD-NVNARLYVDQRCLYFQKPLLESGTLGA 347 (800)
Q Consensus 293 ~~~v~~~~~~~~~--~~f~~~~dvVi~a~D-n~~ar~~l~~~c~~~~~pli~sgt~G~ 347 (800)
... .....+++ ...+..-++||++.. ++..-..+.+.+...++-++++...|.
T Consensus 68 ~~~--~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~ 123 (301)
T PRK09599 68 PAG--EITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG 123 (301)
T ss_pred cCC--cHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence 431 01111111 012233467777643 333344455677777888888777774
No 153
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=88.19 E-value=2.1 Score=50.91 Aligned_cols=33 Identities=15% Similarity=0.471 Sum_probs=27.2
Q ss_pred hcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 211 EDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 211 ~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.++.|+|.|+ |+||..+++.|+..|. ++++++.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~------~Vval~R 112 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF------RVRAGVR 112 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC------eEEEEeC
Confidence 4567999996 9999999999999997 6776653
No 154
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=88.09 E-value=0.91 Score=46.10 Aligned_cols=109 Identities=21% Similarity=0.197 Sum_probs=63.4
Q ss_pred cEEEEcCCchHHH-HHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHH-HHHHHHHHhhCCCceEEE
Q 003714 214 KVFIVGSGALGCE-FLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS-TVAASAATSINPRLNIEA 291 (800)
Q Consensus 214 ~VlvvG~GgiG~e-vlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka-~vaa~~l~~~np~v~i~~ 291 (800)
||.+||+|+.-.. .+..+.+. ...-+.++|.++|-|. .|. ..+ ..+.+.+.+.+++++|+.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~-~~~l~~~ei~L~Did~------~RL----------~~~~~~~~~~~~~~~~~~~v~~ 63 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLR-TEELSGSEIVLMDIDE------ERL----------EIVERLARRMVEEAGADLKVEA 63 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHC-TTTSTEEEEEEE-SCH------HHH----------HHHHHHHHHHHHHCTTSSEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhc-CccCCCcEEEEEcCCH------HHH----------HHHHHHHHHHHHhcCCCeEEEE
Confidence 6899999988754 33333332 1112236899998554 121 111 244555567788888887
Q ss_pred EecccCCCcccccchhhccCccEEEEccC--CHHHHHHHhhhcccccccEEEecccCccc
Q 003714 292 LQNRVGPETENVFDDTFWENITCVINALD--NVNARLYVDQRCLYFQKPLLESGTLGAKC 349 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~D--n~~ar~~l~~~c~~~~~pli~sgt~G~~G 349 (800)
..+. .+-+++.|+||++.- ..++|..=.+.+.++|+.-...-|.|..|
T Consensus 64 ttd~----------~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG 113 (183)
T PF02056_consen 64 TTDR----------REALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGG 113 (183)
T ss_dssp ESSH----------HHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHH
T ss_pred eCCH----------HHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccH
Confidence 6532 234679999999863 45666666677777777554444555444
No 155
>PRK08618 ornithine cyclodeaminase; Validated
Probab=88.07 E-value=1.8 Score=47.93 Aligned_cols=146 Identities=16% Similarity=0.098 Sum_probs=79.2
Q ss_pred cccchhHHHhhhhhhhhhhhcccCc------cccc-c-ceeeecccCCCCCCCCCccCCCCccCcchhhhhccCHHHHHH
Q 003714 138 AVLNPMAAMFGGIVGQEVVKACSGK------FHPL-Y-QFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKK 209 (800)
Q Consensus 138 ~el~PvaA~iGGi~aQEviK~it~k------~~Pi-~-q~~~fd~~~~l~~~~l~~~~~~~~~~RYdrqi~l~G~~~q~~ 209 (800)
+.+.-|.+.++|.- --.+|.++.- ..|- . ..+.||..+..|.-.++...+ ..-|-.-- ...+.+...+
T Consensus 49 ~~~~~mp~~~~~~~-~~g~K~~~~~p~n~~~glp~~~g~i~l~d~~tG~p~a~~d~~~l--T~~RTaa~-sala~~~la~ 124 (325)
T PRK08618 49 NTSLIMPGYAEGLE-ALGLKIVSVVPENKKKGKPTIPGTVILSDFETGEVLAILDGTYL--TQIRTGAL-SGVATKYLAR 124 (325)
T ss_pred CcEEEeeeecCCCC-eEEEEEEeecCCCcccCCCcceEEEEEEeCCCCceEEEEccchh--hhhhHHHH-HHHHHHHhcC
Confidence 34555666665421 1247766532 2332 1 345677766665433332222 11111110 0122222333
Q ss_pred HhcCcEEEEcCCchHHHHHHHHH-HhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCce
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 288 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa-~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~ 288 (800)
-...+++|+|+|+.|-..+..++ ..|+ .+|.|+|.+ ..|++..++.+.... .++
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~-----~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~ 179 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDI-----ERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTE 179 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCc-----cEEEEECCC-------------------HHHHHHHHHHHHHhc-CCc
Confidence 35688999999999988888775 4577 788887633 346666676665432 233
Q ss_pred EEEEecccCCCcccccchhhccCccEEEEccCCH
Q 003714 289 IEALQNRVGPETENVFDDTFWENITCVINALDNV 322 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~ 322 (800)
+..+.. . .+.+...|+|++|+-+.
T Consensus 180 ~~~~~~-----~-----~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 180 IYVVNS-----A-----DEAIEEADIIVTVTNAK 203 (325)
T ss_pred EEEeCC-----H-----HHHHhcCCEEEEccCCC
Confidence 333321 1 23457899999998654
No 156
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=87.97 E-value=0.65 Score=56.93 Aligned_cols=162 Identities=14% Similarity=0.155 Sum_probs=82.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccC----CCcccccccCcccccHHHHHHHHHHhhCCCce
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSN----LSRQFLFRDWNIGQAKSTVAASAATSINPRLN 288 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sN----LnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~ 288 (800)
.+|.|||+|.+|+.++..++..|+ .++++|.+.=.... +.+. +-..-.-|+...+.+.+.+.++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~------~V~l~d~~~~~l~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~i----- 381 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT------PIVMKDINQHSLDLGLTEAAKL-LNKQVERGRITPAKMAGVLNGI----- 381 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC------eEEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCChhhHHHHHhCe-----
Confidence 479999999999999999999998 89999965322111 1110 0000011221111122222221
Q ss_pred EEEEecccCCCcccccchhhccCccEEEEcc-CCHHHHHHHhhhcccccc--cEEEecccCcccc-eEEEeCCcccccCC
Q 003714 289 IEALQNRVGPETENVFDDTFWENITCVINAL-DNVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGA 364 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~-Dn~~ar~~l~~~c~~~~~--pli~sgt~G~~G~-v~~~ip~~t~~y~~ 364 (800)
+... + + +-++++|+||.|+ .+.+.++.+-...-..-. .++-+.|.++.-. +.-..++-..+.+-
T Consensus 382 -~~~~--------~-~--~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~ 449 (714)
T TIGR02437 382 -TPTL--------S-Y--AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGM 449 (714)
T ss_pred -EEeC--------C-H--HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEE
Confidence 1111 0 1 1257899999986 466666544433322212 3566666554321 10011111111111
Q ss_pred CCCCCCCCCCCccccCCCCCchhHHHHHHHHhhh
Q 003714 365 SRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEG 398 (800)
Q Consensus 365 ~~~~~~~~~p~ctl~~fP~~~~h~i~wA~~~F~~ 398 (800)
.--.|....|.-.+-.-+.+-..++..+.++...
T Consensus 450 Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~ 483 (714)
T TIGR02437 450 HFFNPVHRMPLVEVIRGEKSSDETIATVVAYASK 483 (714)
T ss_pred ecCCCcccCceEeecCCCCCCHHHHHHHHHHHHH
Confidence 1111222356666666677888888888887654
No 157
>PRK08251 short chain dehydrogenase; Provisional
Probab=87.86 E-value=1.8 Score=45.00 Aligned_cols=61 Identities=18% Similarity=0.285 Sum_probs=42.0
Q ss_pred cCcEEEEc-CCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEE
Q 003714 212 DAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 290 (800)
Q Consensus 212 ~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~ 290 (800)
+++++|.| .||||.++++.|+..|. ++++++.+ ..+...+...+...+|..++.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~------~v~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~ 56 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR------DLALCARR-------------------TDRLEELKAELLARYPGIKVA 56 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC------EEEEEeCC-------------------HHHHHHHHHHHHhhCCCceEE
Confidence 46799998 59999999999999986 77777643 122333444555556666666
Q ss_pred EEecccC
Q 003714 291 ALQNRVG 297 (800)
Q Consensus 291 ~~~~~v~ 297 (800)
.+..++.
T Consensus 57 ~~~~D~~ 63 (248)
T PRK08251 57 VAALDVN 63 (248)
T ss_pred EEEcCCC
Confidence 6665554
No 158
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=87.85 E-value=1.8 Score=46.62 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=28.7
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEec
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
..+++++|+|+||+|..++..|+..|. +++++|
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~------~v~v~~ 147 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC------NVIIAN 147 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC------EEEEEe
Confidence 346789999999999999999999885 788875
No 159
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=87.84 E-value=2.6 Score=46.58 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=25.2
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhcc
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGV 236 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv 236 (800)
|++++|.|||+|.+|..++++|...|+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~ 27 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGL 27 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCC
Confidence 467899999999999999999999997
No 160
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=87.82 E-value=2.3 Score=47.02 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=25.8
Q ss_pred CcEEEEcC-CchHHHHHHHHHHh-ccccCCCcceEEecC
Q 003714 213 AKVFIVGS-GALGCEFLKNVALM-GVSCGNQGKLTITDD 249 (800)
Q Consensus 213 ~~VlvvG~-GgiG~evlknLa~~-Gv~~~~~g~i~ivD~ 249 (800)
++|+|.|+ |-||+.+++.|... |. +++.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~------~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDW------EVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCC------eEEEEeC
Confidence 47999997 99999999999876 44 7887764
No 161
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.77 E-value=0.54 Score=48.38 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=32.0
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
.|++++|+|+|.|.+|..+++.|...|. +++++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~------~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA------KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEcCC
Confidence 3678899999999999999999999997 88888754
No 162
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=87.63 E-value=0.62 Score=57.02 Aligned_cols=165 Identities=15% Similarity=0.169 Sum_probs=86.9
Q ss_pred CcEEEEcCCchHHHHHHHHH-HhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHH-HHHHh--hCCC--
Q 003714 213 AKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAA-SAATS--INPR-- 286 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa-~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa-~~l~~--~np~-- 286 (800)
.+|.|||+|-+|+.++-.++ ..|+ .++++|.+.= -+.| +..+..-.. +.+.+ +.+.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~------~V~l~d~~~~---~l~~---------~~~~~~~~l~~~~~~~~~~~~~~ 366 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI------PVRIKDINPQ---GINN---------ALKYAWKLLDKGVKRRHMTPAER 366 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC------eEEEEeCCHH---HHHH---------HHHHHHHHHHHHHHcCCCCHHHH
Confidence 47999999999999999998 4898 8999996531 1111 111111000 11100 0000
Q ss_pred ----ceEEEEecccCCCcccccchhhccCccEEEEcc-CCHHHHHHHhhhcccccc--cEEEecccCcccc-eEEEeCCc
Q 003714 287 ----LNIEALQNRVGPETENVFDDTFWENITCVINAL-DNVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHL 358 (800)
Q Consensus 287 ----v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~-Dn~~ar~~l~~~c~~~~~--pli~sgt~G~~G~-v~~~ip~~ 358 (800)
-+|+... + + +-++++|+||.|+ .+.+.++.+-.....+-. .++-+.|.++.=. +.-...+-
T Consensus 367 ~~~~~~i~~~~--------~-~--~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p 435 (699)
T TIGR02440 367 DNQMALITGTT--------D-Y--RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRP 435 (699)
T ss_pred HHHHcCeEEeC--------C-h--HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCc
Confidence 0122111 1 1 1257999999886 466666543333222211 3566666654311 11111111
Q ss_pred ccccCCCCCCCCCCCCCccccCCCCCchhHHHHHHHHhhhhhccChhHH
Q 003714 359 TENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 407 (800)
Q Consensus 359 t~~y~~~~~~~~~~~p~ctl~~fP~~~~h~i~wA~~~F~~~F~~~~~~~ 407 (800)
..+....--.|....|...+-.-|.+-..+++++.+++.. .+..|-.+
T Consensus 436 ~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~-~gk~pv~v 483 (699)
T TIGR02440 436 ENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKK-QGKTPIVV 483 (699)
T ss_pred ccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHH-cCCeEEEE
Confidence 1222222112233467888888889999999999987665 45544433
No 163
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=87.59 E-value=0.51 Score=51.79 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=29.3
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
..||+|+|+||+|+-++-.|+++|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~------~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL------PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC------CeEEEEec
Confidence 4689999999999999999999996 78888764
No 164
>PRK07831 short chain dehydrogenase; Provisional
Probab=87.48 E-value=1.9 Score=45.55 Aligned_cols=33 Identities=21% Similarity=0.443 Sum_probs=27.8
Q ss_pred HhcCcEEEEcC-C-chHHHHHHHHHHhccccCCCcceEEec
Q 003714 210 LEDAKVFIVGS-G-ALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlvvG~-G-giG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
+.+++++|.|+ | |||..+++.|+..|. +++++|
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~------~V~~~~ 49 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGA------RVVISD 49 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCC------EEEEEe
Confidence 44678999997 6 799999999999997 577765
No 165
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.42 E-value=2.3 Score=45.38 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=26.4
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEec
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
.+|.|||+|.+|..++..|...|. ....+.++|
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~---~~~~v~v~~ 35 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGV---PAKDIIVSD 35 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCC---CcceEEEEc
Confidence 479999999999999999999884 113566665
No 166
>PLN02780 ketoreductase/ oxidoreductase
Probab=87.22 E-value=1.9 Score=47.62 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=41.1
Q ss_pred cCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEE
Q 003714 212 DAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 290 (800)
Q Consensus 212 ~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~ 290 (800)
++.++|.|+ ||||.++++.|+..|. ++++++.+ ..|.+.+++.+.+..+..++.
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~------~Vil~~R~-------------------~~~l~~~~~~l~~~~~~~~~~ 107 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL------NLVLVARN-------------------PDKLKDVSDSIQSKYSKTQIK 107 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC------CEEEEECC-------------------HHHHHHHHHHHHHHCCCcEEE
Confidence 457999996 8999999999999997 78887632 234455666666655555555
Q ss_pred EEec
Q 003714 291 ALQN 294 (800)
Q Consensus 291 ~~~~ 294 (800)
.+..
T Consensus 108 ~~~~ 111 (320)
T PLN02780 108 TVVV 111 (320)
T ss_pred EEEE
Confidence 5443
No 167
>PLN03139 formate dehydrogenase; Provisional
Probab=87.20 E-value=0.66 Score=52.63 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=32.1
Q ss_pred HHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 208 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 208 ~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
..|.+++|.|||+|.||..+++.|...|+ ++..+|.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~------~V~~~d~ 230 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNC------NLLYHDR 230 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCC------EEEEECC
Confidence 36899999999999999999999999998 7777774
No 168
>PTZ00117 malate dehydrogenase; Provisional
Probab=86.74 E-value=0.62 Score=51.50 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=31.3
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
++.||.|||+|.+|..++-.|++.|+ +.|.|+|-+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~-----~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL-----GDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC-----CeEEEEECC
Confidence 56799999999999999999999998 689999853
No 169
>PLN02206 UDP-glucuronate decarboxylase
Probab=86.67 E-value=2.1 Score=49.46 Aligned_cols=33 Identities=18% Similarity=0.480 Sum_probs=28.4
Q ss_pred hcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 211 EDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 211 ~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+++||+|.|+ |-||+.+++.|...|. +++++|.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~------~V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD------SVIVVDN 151 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC------EEEEEeC
Confidence 4578999995 9999999999999996 7777764
No 170
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=86.65 E-value=2.8 Score=46.18 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=21.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHhc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMG 235 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~G 235 (800)
.||+|+|+|++||-++-.|++.|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 48999999999999999999999
No 171
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=86.47 E-value=1.8 Score=47.21 Aligned_cols=78 Identities=12% Similarity=0.162 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhhhccccchhHHHhhhhhhhhhhhcccCccccccceeeecccCC
Q 003714 98 SEEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVES 177 (800)
Q Consensus 98 ~~~D~~~l~~i~~~i~~~~~~~~~~~l~~~~i~~~~~~~~~el~PvaA~iGGi~aQEviK~it~k~~Pi~q~~~fd~~~~ 177 (800)
++++.+-+.+.|.+-.++++. +.++-.+++.++...=--++.+.|++||..+-|++|.+|+...+++||+.|.+.+.
T Consensus 197 ~~~~~~~i~~~a~~ra~~f~i---~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~~n~~~~~g~~g 273 (291)
T cd01488 197 DPEHIEWLYQKALERAAQFNI---SGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENLNNYLMYNGVDG 273 (291)
T ss_pred CHHHHHHHHHHHHHHHHHcCC---CcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCCCceEEEecCCc
Confidence 355555566777777777642 34555667777766666688999999999999999999999999999999998665
Q ss_pred C
Q 003714 178 L 178 (800)
Q Consensus 178 l 178 (800)
+
T Consensus 274 ~ 274 (291)
T cd01488 274 C 274 (291)
T ss_pred e
Confidence 4
No 172
>PRK07576 short chain dehydrogenase; Provisional
Probab=86.42 E-value=1.1 Score=47.46 Aligned_cols=36 Identities=14% Similarity=0.341 Sum_probs=31.0
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
++.+++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~------~V~~~~r~ 42 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGA------NVAVASRS 42 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 577889999996 8999999999999986 68887754
No 173
>PRK07478 short chain dehydrogenase; Provisional
Probab=86.35 E-value=1.5 Score=46.03 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=28.7
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+.+++++|.|+ ||||.++++.|+..|. ++.+++.
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~------~v~~~~r 38 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA------KVVVGAR 38 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeC
Confidence 45678999996 8999999999999997 6777764
No 174
>PRK05867 short chain dehydrogenase; Provisional
Probab=86.25 E-value=1.4 Score=46.14 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=29.2
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+++++++|.|+ ||||.++++.|+..|. ++.+++.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~------~V~~~~r 41 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA------QVAIAAR 41 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEcC
Confidence 56788999997 8999999999999997 7777653
No 175
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=86.23 E-value=2.4 Score=46.90 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=68.3
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEE
Q 003714 213 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 291 (800)
Q Consensus 213 ~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~ 291 (800)
.+|.|+|+ |.+|.++++.|....+ .+..+ .++++....|+.=.+. .-
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f------~~~~~------------~~~AS~rSaG~~~~~f--------------~~ 49 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHF------PFEEL------------VLLASARSAGKKYIEF--------------GG 49 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCC------CcceE------------EEEecccccCCccccc--------------cC
Confidence 58999997 9999999999998766 12111 1466677777731111 00
Q ss_pred EecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEE-ecccCcccceEEEeCCc
Q 003714 292 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLE-SGTLGAKCNTQMVIPHL 358 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~-sgt~G~~G~v~~~ip~~ 358 (800)
....+.+ ...+..-|++.|+|+.|...-.++ .+...+.+.|.++|+ ++.+-+.-.|.+++|.+
T Consensus 50 ~~~~v~~---~~~~~~~~~~~Divf~~ag~~~s~-~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeV 113 (334)
T COG0136 50 KSIGVPE---DAADEFVFSDVDIVFFAAGGSVSK-EVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEV 113 (334)
T ss_pred ccccCcc---ccccccccccCCEEEEeCchHHHH-HHHHHHHHcCCEEEeCCcccccCCCCCEecCCc
Confidence 0011111 112233467999999999766664 445556678888885 45555666677777764
No 176
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=86.18 E-value=0.72 Score=56.72 Aligned_cols=163 Identities=13% Similarity=0.092 Sum_probs=82.2
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCC---cccccccCcccccHHHHHHHHHHhhCCCceE
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLS---RQFLFRDWNIGQAKSTVAASAATSINPRLNI 289 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLn---RQflf~~~dIG~~Ka~vaa~~l~~~np~v~i 289 (800)
.+|.|||+|-+|+.++..++..|+ .++++|.+.=.....- ++.+-....-|+.....+.+.+.+ |
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~------~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~------i 403 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL------KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSN------L 403 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC------cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC------e
Confidence 479999999999999999999998 8999996532211100 000000000111111111111111 1
Q ss_pred EEEecccCCCcccccchhhccCccEEEEcc-CCHHHHHHHhhhcccccc--cEEEecccCcccc-eEEEeCCcccccCCC
Q 003714 290 EALQNRVGPETENVFDDTFWENITCVINAL-DNVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGAS 365 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~-Dn~~ar~~l~~~c~~~~~--pli~sgt~G~~G~-v~~~ip~~t~~y~~~ 365 (800)
+... + + +-++++|+||.|+ .+.+.++.+-...-..-. .++-+.|.++.-. +.-....-..+.+-.
T Consensus 404 ~~~~--------~-~--~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~H 472 (737)
T TIGR02441 404 TPTL--------D-Y--SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMH 472 (737)
T ss_pred EEeC--------C-H--HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEe
Confidence 1111 0 1 1257899999886 566666544333322212 2555555553211 100111111111111
Q ss_pred CCCCCCCCCCccccCCCCCchhHHHHHHHHhhh
Q 003714 366 RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEG 398 (800)
Q Consensus 366 ~~~~~~~~p~ctl~~fP~~~~h~i~wA~~~F~~ 398 (800)
--.|....|...+-.-+.+-..++.++.+++..
T Consensus 473 ff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~ 505 (737)
T TIGR02441 473 YFSPVDKMQLLEIITHDGTSKDTLASAVAVGLK 505 (737)
T ss_pred ccCCcccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 111223457777777788888899988886644
No 177
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=86.12 E-value=1.4 Score=45.63 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=29.8
Q ss_pred HhcCcEEEEc-CCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+++++|+|.| +|++|..+++.|+..|. ++++++.+
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~------~V~~~~r~ 39 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA------EVIVVDIC 39 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC------EEEEEeCC
Confidence 4567899999 59999999999999997 78887654
No 178
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=85.90 E-value=0.7 Score=53.05 Aligned_cols=36 Identities=31% Similarity=0.577 Sum_probs=32.4
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.+.+.+|+|+|+|.+|..+++.|...|+ .+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~-----~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGV-----GKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCC-----CEEEEEeC
Confidence 4778999999999999999999999998 78998863
No 179
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=85.86 E-value=0.71 Score=52.89 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=30.6
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
..+|+|||+|-+||+.|-.|++.|+ +++|+|+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl------~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV------PVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC------cEEEEEccC
Confidence 3579999999999999999999998 899999643
No 180
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=85.83 E-value=1.2 Score=43.19 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=40.5
Q ss_pred CcEEEEc-CCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEE
Q 003714 213 AKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 291 (800)
Q Consensus 213 ~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~ 291 (800)
+.++|.| +||||-++++.|+..|- .++.+++.+ .-..+.+.+.+.+...+ .++..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~-----~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~ 56 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGA-----RVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITF 56 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTT-----EEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCc-----eEEEEeeec-----------------ccccccccccccccccc--ccccc
Confidence 3688998 58999999999999986 677776543 11234444455555444 56666
Q ss_pred EecccC
Q 003714 292 LQNRVG 297 (800)
Q Consensus 292 ~~~~v~ 297 (800)
+..++.
T Consensus 57 ~~~D~~ 62 (167)
T PF00106_consen 57 IECDLS 62 (167)
T ss_dssp EESETT
T ss_pred cccccc
Confidence 665444
No 181
>PRK06523 short chain dehydrogenase; Provisional
Probab=85.71 E-value=1.8 Score=45.41 Aligned_cols=55 Identities=15% Similarity=0.289 Sum_probs=39.0
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCccccc
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 271 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~ 271 (800)
++++++|+|.|+ ||||.++++.|+..|. ++++++.+.-+ ++.....+...|+...
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~------~v~~~~r~~~~--~~~~~~~~~~~D~~~~ 61 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA------RVVTTARSRPD--DLPEGVEFVAADLTTA 61 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC------EEEEEeCChhh--hcCCceeEEecCCCCH
Confidence 466789999996 8999999999999997 78888876422 2223333444466543
No 182
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.69 E-value=2.4 Score=48.78 Aligned_cols=94 Identities=14% Similarity=0.188 Sum_probs=57.9
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceE
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 289 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i 289 (800)
+...+|+|+|+|.+|..+++.|...|. .++++|.|. .+.+.+ .+..+++.
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~------~v~vid~~~-------------------~~~~~~----~~~~~~~~- 278 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY------SVKLIERDP-------------------ERAEEL----AEELPNTL- 278 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC------eEEEEECCH-------------------HHHHHH----HHHCCCCe-
Confidence 446889999999999999999999887 789987432 111111 11122322
Q ss_pred EEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhccccc
Q 003714 290 EALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQ 336 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~ 336 (800)
.+...... ...+...-.+++|.||.++++...-..+...|+.++
T Consensus 279 -~i~gd~~~--~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~ 322 (453)
T PRK09496 279 -VLHGDGTD--QELLEEEGIDEADAFIALTNDDEANILSSLLAKRLG 322 (453)
T ss_pred -EEECCCCC--HHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhC
Confidence 23222221 122222345789999999988766665555555544
No 183
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=85.66 E-value=2.6 Score=49.34 Aligned_cols=123 Identities=14% Similarity=0.168 Sum_probs=70.1
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCccccc---HHHHHHHHHHhh-CCCce
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA---KSTVAASAATSI-NPRLN 288 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~---Ka~vaa~~l~~~-np~v~ 288 (800)
.+|.+||+|..|..+++||+..|. .+++.|.+.=....+... ...-|-. -+..+++.+..+ .|++-
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~------~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvI 76 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF------PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSV 76 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC------eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEE
Confidence 479999999999999999999998 888987542111111000 0000211 112233333322 35555
Q ss_pred EEEEecccCCCcccccc--hhhccCccEEEEccCC-HHHHHHHhhhcccccccEEEecccCc
Q 003714 289 IEALQNRVGPETENVFD--DTFWENITCVINALDN-VNARLYVDQRCLYFQKPLLESGTLGA 347 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~--~~f~~~~dvVi~a~Dn-~~ar~~l~~~c~~~~~pli~sgt~G~ 347 (800)
+..+... +..+.+++ ...+..=|+|||+.-. ++.-..+.+.+...++.++++++.|.
T Consensus 77 i~~v~~~--~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 77 IILVKAG--APVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred EEECCCc--HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 5444321 11122221 1123455789988765 34445557778888999999998875
No 184
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=85.41 E-value=0.47 Score=51.58 Aligned_cols=41 Identities=29% Similarity=0.535 Sum_probs=32.3
Q ss_pred EEEEc-CCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcc
Q 003714 215 VFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQ 260 (800)
Q Consensus 215 VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQ 260 (800)
|||-| +|.||+|+++.|+..|. .+|+++|.|--...++.+.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-----~~lil~d~~E~~l~~l~~~ 42 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-----KKLILFDRDENKLYELERE 42 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB------SEEEEEES-HHHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCC-----CeEEEeCCChhHHHHHHHH
Confidence 67888 58999999999999999 8999999776665555554
No 185
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.31 E-value=4.1 Score=42.74 Aligned_cols=25 Identities=8% Similarity=0.344 Sum_probs=22.5
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcc
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGV 236 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv 236 (800)
..||.|||+|.+|..+++.|+..|.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~ 28 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSK 28 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCC
Confidence 5689999999999999999998873
No 186
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.28 E-value=1.8 Score=45.03 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=29.0
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEec
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
+.+.+++|.|+ |+||..+++.|+..|. +++++|
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~------~vi~~~ 36 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA------KLALID 36 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEe
Confidence 56788999997 9999999999999986 678876
No 187
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=85.25 E-value=4.4 Score=40.06 Aligned_cols=86 Identities=19% Similarity=0.248 Sum_probs=52.3
Q ss_pred EEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEEe
Q 003714 215 VFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 293 (800)
Q Consensus 215 VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~ 293 (800)
|+|+|+ |.+|..+++.|...|. +++++ .|. ..|.+. .+.+ +.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~------~V~~~---------------~R~----~~~~~~--------~~~~--~~~~ 45 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH------EVTAL---------------VRS----PSKAED--------SPGV--EIIQ 45 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS------EEEEE---------------ESS----GGGHHH--------CTTE--EEEE
T ss_pred eEEECCCChHHHHHHHHHHHCCC------EEEEE---------------ecC----chhccc--------cccc--ccce
Confidence 799998 9999999999999996 66663 122 122222 4444 4444
Q ss_pred cccCCCcccccchhhccCccEEEEccCC----HHHHHHHhhhccccccc
Q 003714 294 NRVGPETENVFDDTFWENITCVINALDN----VNARLYVDQRCLYFQKP 338 (800)
Q Consensus 294 ~~v~~~~~~~~~~~f~~~~dvVi~a~Dn----~~ar~~l~~~c~~~~~p 338 (800)
..+.+. +. + ..-+.++|.|+.++.. ...-..+-+.|...+++
T Consensus 46 ~d~~d~-~~-~-~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~ 91 (183)
T PF13460_consen 46 GDLFDP-DS-V-KAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVK 91 (183)
T ss_dssp SCTTCH-HH-H-HHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSS
T ss_pred eeehhh-hh-h-hhhhhhcchhhhhhhhhcccccccccccccccccccc
Confidence 444322 11 1 2345689999999853 23333555566666665
No 188
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=85.04 E-value=0.89 Score=49.25 Aligned_cols=30 Identities=33% Similarity=0.517 Sum_probs=27.6
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+|+|+|+|++|+.++..|+..|. .++++|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~------~V~~~~r 31 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH------DVTLVAR 31 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC------eEEEEEC
Confidence 79999999999999999999985 7899885
No 189
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=84.88 E-value=3.2 Score=46.47 Aligned_cols=95 Identities=16% Similarity=0.116 Sum_probs=57.3
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEEe
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 293 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~ 293 (800)
+|+|+|+|.||.-.+..+.+.|. ..|+++|.+ ..|-+.|++..-. -.+....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga-----~~Viv~d~~-------------------~~Rl~~A~~~~g~----~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA-----SVVIVVDRS-------------------PERLELAKEAGGA----DVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC-----ceEEEeCCC-------------------HHHHHHHHHhCCC----eEeecCc
Confidence 89999999999999999999998 899998732 2333344332110 0000000
Q ss_pred cccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhccccccc
Q 003714 294 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKP 338 (800)
Q Consensus 294 ~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~p 338 (800)
.. .....+....--..+|+||+|+.+..+.....+.++..+.-
T Consensus 223 ~~--~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v 265 (350)
T COG1063 223 ED--DAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTV 265 (350)
T ss_pred cc--cHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 00 00001110000136999999999888777777777766653
No 190
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=84.68 E-value=3.2 Score=44.66 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.5
Q ss_pred CcEEEEcCCchHHHHHHHHHHhc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMG 235 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~G 235 (800)
.||.|||+|.+|..+++.|...+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~ 24 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGR 24 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCC
Confidence 37999999999999999998764
No 191
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=84.67 E-value=0.89 Score=49.95 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=29.4
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
..+|+|||+|++|+-++..|+..|. .++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~------~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF------DVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC------eEEEEEeCC
Confidence 3689999999999999999999996 788877554
No 192
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=84.59 E-value=1.2 Score=51.01 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=31.9
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.|.+++|.|||.|.||..+++.+...|. ++...|.
T Consensus 148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm------~V~~~d~ 182 (409)
T PRK11790 148 EVRGKTLGIVGYGHIGTQLSVLAESLGM------RVYFYDI 182 (409)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5889999999999999999999998887 7888884
No 193
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.26 E-value=2.9 Score=44.55 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=21.5
Q ss_pred cEEEEcCCchHHHHHHHHHHhcc
Q 003714 214 KVFIVGSGALGCEFLKNVALMGV 236 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv 236 (800)
+|.|||+|.+|..+++.|...|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~ 24 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA 24 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC
Confidence 69999999999999999998885
No 194
>PRK06141 ornithine cyclodeaminase; Validated
Probab=84.26 E-value=2 Score=47.44 Aligned_cols=142 Identities=20% Similarity=0.223 Sum_probs=79.8
Q ss_pred cccchhHHHhhh-hhhhhhhhcccC------ccccccc--eeeecccCCCCCCCCCccCCCCccCcchhhhhccCHHHHH
Q 003714 138 AVLNPMAAMFGG-IVGQEVVKACSG------KFHPLYQ--FFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQK 208 (800)
Q Consensus 138 ~el~PvaA~iGG-i~aQEviK~it~------k~~Pi~q--~~~fd~~~~l~~~~l~~~~~~~~~~RYdrqi~l~G~~~q~ 208 (800)
+.+..|.+.+|+ ++ .+|.++. +..|-.+ .+.||..+..|.-.++...+ ..-|-.-. .-.+.+...
T Consensus 48 ~~~~~mp~~~~~~~~---g~K~~~~~p~N~~~glp~~~g~v~l~d~~tG~p~ai~d~~~l--T~~RTaa~-sala~~~La 121 (314)
T PRK06141 48 ATLLLMPAWNEGRYI---GVKAVTVFPGNPARGLPGLHSTYLLFDGRTGEPLALVDGTEL--TARRTAAA-SALAASYLA 121 (314)
T ss_pred ceEEEeeeecCCCee---EEEEEeecCCCCcCCCCceEEEEEEEECCCCCEEEEEcCcch--hcchhHHH-HHHHHHHhC
Confidence 345566666643 22 3776653 2334332 34577766666433332222 11121111 112223333
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHH-hccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 287 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~-~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v 287 (800)
+...++|+|+|+|+.|..+++.+.+ .|+ .+|++.+ ....|++..++.+.+...
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~-----~~V~V~~-------------------Rs~~~a~~~a~~~~~~g~-- 175 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPI-----KQVRVWG-------------------RDPAKAEALAAELRAQGF-- 175 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCC-----CEEEEEc-------------------CCHHHHHHHHHHHHhcCC--
Confidence 4457899999999999999987766 566 6888874 235677777777765422
Q ss_pred eEEEEecccCCCcccccchhhccCccEEEEccCC
Q 003714 288 NIEALQNRVGPETENVFDDTFWENITCVINALDN 321 (800)
Q Consensus 288 ~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn 321 (800)
.+.... +. .+...++|+|++|+.+
T Consensus 176 ~~~~~~-----~~-----~~av~~aDIVi~aT~s 199 (314)
T PRK06141 176 DAEVVT-----DL-----EAAVRQADIISCATLS 199 (314)
T ss_pred ceEEeC-----CH-----HHHHhcCCEEEEeeCC
Confidence 233321 11 2345789999999874
No 195
>PLN02306 hydroxypyruvate reductase
Probab=84.25 E-value=1.2 Score=50.52 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=30.5
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHH-HhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa-~~Gv~~~~~g~i~ivD~ 249 (800)
.|.+++|.|||.|.||.++++.|. ..|+ ++..+|.
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm------~V~~~d~ 197 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM------NLIYYDL 197 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCC------EEEEECC
Confidence 588999999999999999999985 6676 7888875
No 196
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=84.19 E-value=0.93 Score=49.89 Aligned_cols=76 Identities=24% Similarity=0.329 Sum_probs=52.2
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceE
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 289 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i 289 (800)
+...+|+|+|+|.+|..+++.|...|. ..|+++|.+ ..|+..+++.+. . .+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~-----~~V~v~~r~-------------------~~ra~~la~~~g---~--~~ 226 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGV-----AEITIANRT-------------------YERAEELAKELG---G--NA 226 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCC-----CEEEEEeCC-------------------HHHHHHHHHHcC---C--eE
Confidence 678999999999999999999999887 788888643 234444444332 1 11
Q ss_pred EEEecccCCCcccccchhhccCccEEEEccCCHHH
Q 003714 290 EALQNRVGPETENVFDDTFWENITCVINALDNVNA 324 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~a 324 (800)
..+. +. .+.+..+|+||.|+-+...
T Consensus 227 ~~~~--------~~--~~~l~~aDvVi~at~~~~~ 251 (311)
T cd05213 227 VPLD--------EL--LELLNEADVVISATGAPHY 251 (311)
T ss_pred EeHH--------HH--HHHHhcCCEEEECCCCCch
Confidence 1111 11 2335678999999988766
No 197
>PRK09186 flagellin modification protein A; Provisional
Probab=84.16 E-value=2.6 Score=44.06 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=27.8
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEec
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
+++++|+|.|+ |+||.++++.|+..|. ++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~------~v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG------IVIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEe
Confidence 35678999996 8999999999999997 677764
No 198
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.13 E-value=1.9 Score=46.98 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=29.6
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.|++++++|.|+ ||||.++++.|+..|. +++++|.
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga------~Vv~~~~ 44 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGA------TVVVNDV 44 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEecC
Confidence 466789999996 7999999999999997 6777764
No 199
>PRK12367 short chain dehydrogenase; Provisional
Probab=83.95 E-value=1.3 Score=46.90 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=34.1
Q ss_pred HHHHHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 206 LQKKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 206 ~q~~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
.|.++++++++|.|+ ||||.++++.|+..|. +++++|.+
T Consensus 8 ~~~~l~~k~~lITGas~gIG~ala~~l~~~G~------~Vi~~~r~ 47 (245)
T PRK12367 8 AQSTWQGKRIGITGASGALGKALTKAFRAKGA------KVIGLTHS 47 (245)
T ss_pred hHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 578999999999996 8999999999999997 77777654
No 200
>PRK14982 acyl-ACP reductase; Provisional
Probab=83.89 E-value=0.95 Score=50.42 Aligned_cols=36 Identities=28% Similarity=0.490 Sum_probs=31.1
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHH-hccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVAL-MGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~-~Gv~~~~~g~i~ivD~ 249 (800)
.|++++|+|+|+ |.+|+++++.|+. .|+ .++++++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv-----~~lilv~R 189 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGV-----AELLLVAR 189 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCC-----CEEEEEcC
Confidence 578899999999 8999999999985 477 78888764
No 201
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=83.88 E-value=2.8 Score=44.78 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=28.3
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
++.+|.|||+|.+|+.+++.|...|... ..++.+.|.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~--~~~i~~~~~ 38 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIG--KENIYYHTP 38 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCC--cceEEEECC
Confidence 3568999999999999999999988521 124666654
No 202
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.76 E-value=3.1 Score=45.65 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=29.3
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
..++|+|.|||.||--...-+-.+|. .+|.++|.
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA-----~~VVi~d~ 202 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGA-----SDVVITDL 202 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCC-----CcEEEeec
Confidence 35789999999999888888888888 89999874
No 203
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=83.60 E-value=3.4 Score=47.74 Aligned_cols=33 Identities=15% Similarity=0.392 Sum_probs=28.3
Q ss_pred cCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 212 DAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
..||+|.|+ |-||+.+++.|...|. +++++|.+
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~------~V~~ldr~ 153 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD------EVIVIDNF 153 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 458999995 9999999999999987 78888754
No 204
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.56 E-value=1.8 Score=47.19 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=27.8
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+|.+||+|.+|..++++|+..|. .+++.|.+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~------~v~v~dr~ 32 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH------EVVGYDVN 32 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC------EEEEEECC
Confidence 69999999999999999999997 78888754
No 205
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=83.49 E-value=1.5 Score=51.02 Aligned_cols=121 Identities=13% Similarity=0.170 Sum_probs=67.3
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccc--cHHHHHHHHHHhh-CCCceEE
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ--AKSTVAASAATSI-NPRLNIE 290 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~--~Ka~vaa~~l~~~-np~v~i~ 290 (800)
.|.|||+|.+|..++.||+..|. ++++.|.+.=....+..+. ..|. .-+..+++.+..+ .|++-+.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~------~V~v~drt~~~~~~l~~~~-----~~g~~~~~~~s~~e~v~~l~~~dvIil 69 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF------TVSVYNRTPEKTDEFLAEH-----AKGKKIVGAYSIEEFVQSLERPRKIML 69 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC------eEEEEeCCHHHHHHHHhhc-----cCCCCceecCCHHHHHhhcCCCCEEEE
Confidence 47899999999999999999998 7888886543222222110 0010 0011123333322 3555444
Q ss_pred EEecccCCCcccccc--hhhccCccEEEEccC-CHHHHHHHhhhcccccccEEEecccCc
Q 003714 291 ALQNRVGPETENVFD--DTFWENITCVINALD-NVNARLYVDQRCLYFQKPLLESGTLGA 347 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~--~~f~~~~dvVi~a~D-n~~ar~~l~~~c~~~~~pli~sgt~G~ 347 (800)
.+.. ....+.+++ ...+..=|+|||+.- .+..-....+.+...++-++++++.|.
T Consensus 70 ~v~~--~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG 127 (467)
T TIGR00873 70 MVKA--GAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG 127 (467)
T ss_pred ECCC--cHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence 4332 111112221 123445589999874 333323334557778899999999884
No 206
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=83.45 E-value=0.91 Score=48.36 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=35.5
Q ss_pred HHHhcCcEEEEcCCchHHHHHHHHHHhccccCC-----CcceEEecCCc
Q 003714 208 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGN-----QGKLTITDDDV 251 (800)
Q Consensus 208 ~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~-----~g~i~ivD~D~ 251 (800)
++|.+.||+++|+|+-|+-+++.|...|+..|- ..+|.++|..-
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~G 69 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKG 69 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCC
Confidence 468889999999999999999999999982110 13899999753
No 207
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=83.44 E-value=2.1 Score=44.91 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=30.9
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
+.+++++|.|+ |+||.++++.|+..|. +++++|.+.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~------~v~~~~r~~ 40 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA------RVVIADIKP 40 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEcCCH
Confidence 55778999996 9999999999999997 788887654
No 208
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=83.42 E-value=1 Score=50.03 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=32.3
Q ss_pred HHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEe
Q 003714 208 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTIT 247 (800)
Q Consensus 208 ~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iv 247 (800)
..|.+++|+|||+|-+|..++++|...|+ ++|+|+
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~-----~~i~v~ 204 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGY-----SRITFC 204 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCC-----CEEEEE
Confidence 35889999999999999999999999999 789987
No 209
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=83.40 E-value=1.1 Score=49.78 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=32.2
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
.|.+++|.|||+|.+|..+++.|...|. +++..|..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~------~V~~~d~~ 178 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGA------TITAYDAY 178 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEeCC
Confidence 5888999999999999999999999887 88888853
No 210
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.29 E-value=2.1 Score=46.51 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=30.8
Q ss_pred HHhcCcEEEEcCCc-hHHHHHHHHHHhccccCCCcceEEec
Q 003714 209 KLEDAKVFIVGSGA-LGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlvvG~Gg-iG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
.|++++|+|||.|. +|..+++.|...|. .+++++
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga------tVtv~~ 189 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA------SVTILH 189 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC------eEEEEe
Confidence 48899999999999 99999999999986 888876
No 211
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=83.24 E-value=1.1 Score=48.89 Aligned_cols=35 Identities=14% Similarity=0.434 Sum_probs=31.1
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.|.+++++|+|+|++|..+++.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~------~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA------RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC------EEEEEeC
Confidence 5678999999999999999999999997 7888764
No 212
>PLN02427 UDP-apiose/xylose synthase
Probab=83.11 E-value=2.7 Score=47.38 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=29.0
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.++.++|+|.|+ |-||+.+++.|+..|- -+++.+|.
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g-----~~V~~l~r 47 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETP-----HKVLALDV 47 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCC-----CEEEEEec
Confidence 566678999995 9999999999999852 26777774
No 213
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=83.01 E-value=2.7 Score=48.26 Aligned_cols=110 Identities=17% Similarity=0.159 Sum_probs=68.0
Q ss_pred CcEEEEcCCchHH-HHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEE
Q 003714 213 AKVFIVGSGALGC-EFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 291 (800)
Q Consensus 213 ~~VlvvG~GgiG~-evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~ 291 (800)
.||.|||+|+.-+ ++++.|+...- ..+.++|+++|-|. ...|+. + ...+.+.+.+.++.++|+.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~-~l~~~ei~L~Did~--~~rl~~--------v----~~~~~~~~~~~~~~~~v~~ 65 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYE-ELPVTELVLVDIDE--EEKLEI--------V----GALAKRMVKKAGLPIKVHL 65 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccc-cCCCCEEEEecCCh--HHHHHH--------H----HHHHHHHHHhhCCCeEEEE
Confidence 3799999999765 67777776311 11228999999664 222221 1 2345556666777888777
Q ss_pred EecccCCCcccccchhhccCccEEEEccC--CHHHHHHHhhhcccccccEEEecccCccc
Q 003714 292 LQNRVGPETENVFDDTFWENITCVINALD--NVNARLYVDQRCLYFQKPLLESGTLGAKC 349 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~D--n~~ar~~l~~~c~~~~~pli~sgt~G~~G 349 (800)
..+. .+-+++.|+||++.- ..++|..-.+...++|+- -.-|.|..|
T Consensus 66 t~d~----------~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~--gqET~G~GG 113 (419)
T cd05296 66 TTDR----------REALEGADFVFTQIRVGGLEARALDERIPLKHGVI--GQETTGAGG 113 (419)
T ss_pred eCCH----------HHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCc--cccCCCcch
Confidence 6431 234578899998763 445665666666677653 245666666
No 214
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=83.01 E-value=1.1 Score=51.52 Aligned_cols=35 Identities=34% Similarity=0.600 Sum_probs=31.7
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+.+.+|+|+|+|++|..+++.|...|+ ..|+++|.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~-----~~V~v~~r 214 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGV-----RKITVANR 214 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCC-----CeEEEEeC
Confidence 678999999999999999999999998 78988763
No 215
>PRK10537 voltage-gated potassium channel; Provisional
Probab=82.90 E-value=3.2 Score=47.27 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=31.4
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCccc
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE 253 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie 253 (800)
+.+++|+|.|.+|.++++.|...|. .++++|.|.++
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~------~vvVId~d~~~ 275 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQ------AVTVIVPLGLE 275 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCC------CEEEEECchhh
Confidence 5689999999999999999988886 78899988553
No 216
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=82.87 E-value=1.3 Score=47.76 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=29.1
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEec
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
++++|+|+||.|..++-.|+..|+ .+|+|++
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~-----~~i~i~n 153 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGF-----TDGTIVA 153 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC-----CEEEEEe
Confidence 589999999999999999999999 7899986
No 217
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=82.84 E-value=3.3 Score=47.81 Aligned_cols=110 Identities=13% Similarity=0.084 Sum_probs=71.1
Q ss_pred CcEEEEcCCch-HHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEE
Q 003714 213 AKVFIVGSGAL-GCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 291 (800)
Q Consensus 213 ~~VlvvG~Ggi-G~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~ 291 (800)
.||.|||+|+. +.++++.|+..-- .-+.++|+++|-|. ..|.+ + ...+.+.+.+.++.++|++
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~-~l~~~ei~L~DId~---~rl~~--------v----~~l~~~~~~~~g~~~~v~~ 64 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKE-DFPLRELVLYDIDA---ERQEK--------V----AEAVKILFKENYPEIKFVY 64 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcc-cCCCCEEEEECCCH---HHHHH--------H----HHHHHHHHHhhCCCeEEEE
Confidence 37999999985 2366666665520 01238999999553 22211 1 1234455556677788887
Q ss_pred EecccCCCcccccchhhccCccEEEEcc--CCHHHHHHHhhhcccccccEEEecccCcccc
Q 003714 292 LQNRVGPETENVFDDTFWENITCVINAL--DNVNARLYVDQRCLYFQKPLLESGTLGAKCN 350 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~--Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~ 350 (800)
..++ .+-+++.|+||++. ...++|..-.+.+.+||+ +-.-|.|..|-
T Consensus 65 Ttdr----------~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG~ 113 (437)
T cd05298 65 TTDP----------EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGGF 113 (437)
T ss_pred ECCH----------HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHHH
Confidence 6542 23468899999886 456888877789999996 44466677763
No 218
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=82.82 E-value=1.9 Score=47.77 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=28.3
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHH-HhccccCCCcceEEec
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa-~~Gv~~~~~g~i~ivD 248 (800)
.|.++++.|||.|.||.++++.|. ..|+ ++...|
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm------~V~~~~ 176 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNM------PILYNA 176 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCC------EEEEEC
Confidence 589999999999999999999986 4555 566655
No 219
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=82.63 E-value=1.3 Score=51.04 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=29.3
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
.+|+|||+|-.|||+|..|++.|+ +++|+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~------~V~LiE~r 32 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV------PVILYEMR 32 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC------cEEEEecc
Confidence 379999999999999999999998 89999864
No 220
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=82.53 E-value=3.9 Score=45.31 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=79.0
Q ss_pred cccchhHHHhhhhhhhhhhhcccCc------ccccc--ceeeecccCCCCCCC-CCccCCCCccCcchhhhhccCHHHHH
Q 003714 138 AVLNPMAAMFGGIVGQEVVKACSGK------FHPLY--QFFYFDSVESLPTEP-LDSTEFKPINSRYDAQISVFGAKLQK 208 (800)
Q Consensus 138 ~el~PvaA~iGGi~aQEviK~it~k------~~Pi~--q~~~fd~~~~l~~~~-l~~~~~~~~~~RYdrqi~l~G~~~q~ 208 (800)
+.+..+.|.++|.-. -.+|.++.- ..|-. ..+.||.....|... +....+ ..-|-+..- ........
T Consensus 50 ~~~~~m~~~~~~~~~-~g~K~~~~~p~N~~~glp~~~g~i~l~d~~tG~~~ai~~d~~~l--T~~RTaa~~-~laa~~la 125 (326)
T TIGR02992 50 GEVDVKTAYVPGLDG-FAIKVSPGFFDNPKLGLPSLNGMMVLLSSRTGLLQALLLDNGYL--TDVRTAAAG-AVAARHLA 125 (326)
T ss_pred CeEEEeehhcCCCCc-eEEEEecccCCccccCCCceeEEEEEEECCCCCceEEEcCCchH--HHHHHHHHH-HHHHHHhC
Confidence 456777777776321 247766541 23332 234577655544332 111111 112222110 11111111
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHH-HhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 287 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa-~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v 287 (800)
+-..++++|+|+|+.|...++.|+ ..|+ .+|+|.+. ...|++..++.+.+..+ +
T Consensus 126 ~~~~~~v~iiGaG~qA~~~~~al~~~~~i-----~~v~V~~R-------------------~~~~a~~~a~~~~~~~g-~ 180 (326)
T TIGR02992 126 REDSSVVAIFGAGMQARLQLEALTLVRDI-----RSARIWAR-------------------DSAKAEALALQLSSLLG-I 180 (326)
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHHhCCc-----cEEEEECC-------------------CHHHHHHHHHHHHhhcC-c
Confidence 223468999999999999999997 4677 68888642 23577777777754332 3
Q ss_pred eEEEEecccCCCcccccchhhccCccEEEEccCC
Q 003714 288 NIEALQNRVGPETENVFDDTFWENITCVINALDN 321 (800)
Q Consensus 288 ~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn 321 (800)
++..... . .+.+.+.|+|++|+-.
T Consensus 181 ~v~~~~~-----~-----~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 181 DVTAATD-----P-----RAAMSGADIIVTTTPS 204 (326)
T ss_pred eEEEeCC-----H-----HHHhccCCEEEEecCC
Confidence 4433211 1 2345789999999854
No 221
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=82.52 E-value=2 Score=50.02 Aligned_cols=123 Identities=15% Similarity=0.174 Sum_probs=67.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCccccc--HHHHHHHHHHhh-CCCceE
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA--KSTVAASAATSI-NPRLNI 289 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~--Ka~vaa~~l~~~-np~v~i 289 (800)
++|.|||+|..|..++.||+..|. ++++.|.+.=....+... ...-|.. -+..+++.+..+ .|++-+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~------~V~v~dr~~~~~~~l~~~----~~~~g~~i~~~~s~~e~v~~l~~~d~Ii 71 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF------KISVYNRTYEKTEEFVKK----AKEGNTRVKGYHTLEELVNSLKKPRKVI 71 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC------eEEEEeCCHHHHHHHHHh----hhhcCCcceecCCHHHHHhcCCCCCEEE
Confidence 479999999999999999999997 789988643221111100 0000100 011233333332 355433
Q ss_pred EEEecccCCCcccccc--hhhccCccEEEEccCC-HHHHHHHhhhcccccccEEEecccCc
Q 003714 290 EALQNRVGPETENVFD--DTFWENITCVINALDN-VNARLYVDQRCLYFQKPLLESGTLGA 347 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~--~~f~~~~dvVi~a~Dn-~~ar~~l~~~c~~~~~pli~sgt~G~ 347 (800)
..+... ...+.+++ ...++.=|+||++.-. ++.-......+...++-++++|+.|-
T Consensus 72 l~v~~~--~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG 130 (470)
T PTZ00142 72 LLIKAG--EAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG 130 (470)
T ss_pred EEeCCh--HHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence 332211 01111111 1234556889988754 23333334677778999999998884
No 222
>PRK07814 short chain dehydrogenase; Provisional
Probab=82.44 E-value=2.8 Score=44.33 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=29.6
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+.+++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~------~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA------DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56788999996 6899999999999997 78887754
No 223
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.42 E-value=2.8 Score=43.37 Aligned_cols=80 Identities=24% Similarity=0.364 Sum_probs=51.1
Q ss_pred cCcEEEEcC--CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHH--hhCCCc
Q 003714 212 DAKVFIVGS--GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAT--SINPRL 287 (800)
Q Consensus 212 ~~~VlvvG~--GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~--~~np~v 287 (800)
.++|+|.|| ||||-++++-+++-|. .+.-+-...=...||.-||-.....+.-.|-+-..+... +-||+-
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~------~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~G 80 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGY------LVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDG 80 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCe------EEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCC
Confidence 568999998 9999999999999997 444444444445678877754433333333333333333 345888
Q ss_pred eEEEEecccC
Q 003714 288 NIEALQNRVG 297 (800)
Q Consensus 288 ~i~~~~~~v~ 297 (800)
+++.+..+.+
T Consensus 81 kld~L~NNAG 90 (289)
T KOG1209|consen 81 KLDLLYNNAG 90 (289)
T ss_pred ceEEEEcCCC
Confidence 8887765543
No 224
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=82.19 E-value=1.4 Score=45.98 Aligned_cols=37 Identities=32% Similarity=0.446 Sum_probs=33.0
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
.|+.++|+|.|.|.+|..+++.|...|. ..+.+.|.+
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~-----~vV~vsD~~ 56 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGG-----KVLAVSDPD 56 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCC-----EEEEEEcCC
Confidence 4688999999999999999999999997 678888854
No 225
>PRK05875 short chain dehydrogenase; Provisional
Probab=82.13 E-value=4.2 Score=43.16 Aligned_cols=34 Identities=15% Similarity=0.352 Sum_probs=29.4
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+++++++|.|+ |+||.++++.|+..|. ++++++.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~------~V~~~~r 39 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA------AVMIVGR 39 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC------eEEEEeC
Confidence 56789999996 8999999999999997 6777763
No 226
>PRK07340 ornithine cyclodeaminase; Validated
Probab=82.11 E-value=2 Score=47.21 Aligned_cols=77 Identities=16% Similarity=0.258 Sum_probs=53.3
Q ss_pred HHHhcCcEEEEcCCchHHHHHHHHHH-hccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCC
Q 003714 208 KKLEDAKVFIVGSGALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR 286 (800)
Q Consensus 208 ~~L~~~~VlvvG~GgiG~evlknLa~-~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~ 286 (800)
.+....+++|+|+|+.|...++.+.. .|+ .+|.|.|. ...|++..++.+.+.+.
T Consensus 121 a~~~~~~v~IiGaG~qa~~~~~al~~~~~~-----~~v~v~~r-------------------~~~~a~~~a~~~~~~~~- 175 (304)
T PRK07340 121 APAPPGDLLLIGTGVQARAHLEAFAAGLPV-----RRVWVRGR-------------------TAASAAAFCAHARALGP- 175 (304)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCC-----CEEEEEcC-------------------CHHHHHHHHHHHHhcCC-
Confidence 34456899999999999999999975 566 67888652 35677888887765432
Q ss_pred ceEEEEecccCCCcccccchhhccCccEEEEccCC
Q 003714 287 LNIEALQNRVGPETENVFDDTFWENITCVINALDN 321 (800)
Q Consensus 287 v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn 321 (800)
.+. . . +. ++-+.++|+|+.|+-+
T Consensus 176 -~~~-~----~-~~-----~~av~~aDiVitaT~s 198 (304)
T PRK07340 176 -TAE-P----L-DG-----EAIPEAVDLVVTATTS 198 (304)
T ss_pred -eeE-E----C-CH-----HHHhhcCCEEEEccCC
Confidence 222 1 1 11 2345799999999855
No 227
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=82.10 E-value=0.97 Score=48.07 Aligned_cols=41 Identities=22% Similarity=0.515 Sum_probs=35.0
Q ss_pred hccccchhHHHhhhhhhhhhhhcccCcccccc-ceeeecccC
Q 003714 136 ARAVLNPMAAMFGGIVGQEVVKACSGKFHPLY-QFFYFDSVE 176 (800)
Q Consensus 136 ~~~el~PvaA~iGGi~aQEviK~it~k~~Pi~-q~~~fd~~~ 176 (800)
..+-+.|+.+++|++.|+|+||.++|...|+. ..++||..+
T Consensus 190 ~~gv~~~~~~~~~~~~a~e~ik~l~g~~~~l~g~l~~~d~~~ 231 (245)
T PRK05690 190 EAGVMAPLVGVIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMT 231 (245)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCC
Confidence 35579999999999999999999999988985 666788753
No 228
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.08 E-value=4.5 Score=46.54 Aligned_cols=89 Identities=18% Similarity=0.259 Sum_probs=54.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEE
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 292 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~ 292 (800)
.+|+|+|+|.+|..+++.|...|. .++++|.|. .+++.+++ . ..+..+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~------~v~vid~~~-------------------~~~~~~~~-----~--~~~~~~ 48 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN------DVTVIDTDE-------------------ERLRRLQD-----R--LDVRTV 48 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------cEEEEECCH-------------------HHHHHHHh-----h--cCEEEE
Confidence 379999999999999999999997 788887421 11222221 0 123333
Q ss_pred ecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccc
Q 003714 293 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF 335 (800)
Q Consensus 293 ~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~ 335 (800)
...... ...+...-.+++|.||.++++...-..+-..|+.+
T Consensus 49 ~gd~~~--~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~ 89 (453)
T PRK09496 49 VGNGSS--PDVLREAGAEDADLLIAVTDSDETNMVACQIAKSL 89 (453)
T ss_pred EeCCCC--HHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHh
Confidence 332221 11222223578999999998877666666666554
No 229
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=81.97 E-value=4.6 Score=42.36 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=27.6
Q ss_pred cCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 212 DAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+++|+|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~------~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY------RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 457999996 7999999999999986 78888743
No 230
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=81.89 E-value=3 Score=43.33 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=29.2
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
|++++++|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~------~v~~~~r~ 36 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA------KVAVFDLN 36 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEecCC
Confidence 45788999995 8999999999999987 67777643
No 231
>PRK06139 short chain dehydrogenase; Provisional
Probab=81.75 E-value=2.7 Score=46.59 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=29.8
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.+.+++|+|.|+ ||||.++++.|+..|. ++++++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~------~Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA------RLVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC------EEEEEEC
Confidence 356789999997 8999999999999997 7777763
No 232
>PRK05866 short chain dehydrogenase; Provisional
Probab=81.63 E-value=2.8 Score=45.39 Aligned_cols=34 Identities=15% Similarity=0.329 Sum_probs=28.9
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+.+++++|.|+ ||||.++++.|+..|. +++++|.
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~------~Vi~~~R 72 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA------TVVAVAR 72 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEEC
Confidence 45678999996 9999999999999997 7777763
No 233
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=81.59 E-value=1.5 Score=47.65 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=29.1
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
++|.|||+|.+|+.++..|+..|. .++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~------~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM------DVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC------eEEEEeCC
Confidence 579999999999999999999997 88998854
No 234
>PRK08328 hypothetical protein; Provisional
Probab=81.55 E-value=1 Score=47.38 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=33.6
Q ss_pred ccccchhHHHhhhhhhhhhhhcccCccccccce-eeecccC
Q 003714 137 RAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQF-FYFDSVE 176 (800)
Q Consensus 137 ~~el~PvaA~iGGi~aQEviK~it~k~~Pi~q~-~~fd~~~ 176 (800)
.+-+.|+.+++|++.|+|++|.++|...|+.+. +.||..+
T Consensus 183 ~~~~~~~~~ii~~~~a~e~~k~l~g~~~~~~~~l~~~d~~~ 223 (231)
T PRK08328 183 FPILGATAGVIGSIQAMEVIKLITGYGEPLLNKLLIVDLAN 223 (231)
T ss_pred CCcCchHHHHHHHHHHHHHHHHHhCCCCcccCeEEEEECCC
Confidence 346899999999999999999999998998654 5688643
No 235
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=81.51 E-value=3.9 Score=44.32 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=27.1
Q ss_pred cEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 214 KVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 214 ~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+|+|.|+ |.||..+++.|+..|. +++++|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~------~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE------EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC------EEEEEEec
Confidence 6899995 9999999999999986 78888764
No 236
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=81.31 E-value=1.6 Score=52.67 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=60.5
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEE
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 291 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~ 291 (800)
+.+|+|+|+|.+|..+++.|...|+ .++++|.|.- +++.+++ . +. ..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~------~vvvID~d~~-------------------~v~~~~~----~--g~--~v 446 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV------KMTVLDHDPD-------------------HIETLRK----F--GM--KV 446 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC------CEEEEECCHH-------------------HHHHHHh----c--CC--eE
Confidence 4689999999999999999999998 8999997642 2222222 1 22 23
Q ss_pred EecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccc
Q 003714 292 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF 335 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~ 335 (800)
+..+.+. .+.+...-.++.++||.++|+.++-..+-..++++
T Consensus 447 ~~GDat~--~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~ 488 (621)
T PRK03562 447 FYGDATR--MDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEH 488 (621)
T ss_pred EEEeCCC--HHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 3333321 22233334568899999999998877776666654
No 237
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=81.26 E-value=1.4 Score=48.85 Aligned_cols=32 Identities=25% Similarity=0.607 Sum_probs=28.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
.||.|||+|++|+.++..|+..|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~------~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA------DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC------cEEEEecH
Confidence 579999999999999999999996 78888853
No 238
>PRK12827 short chain dehydrogenase; Provisional
Probab=81.19 E-value=3.7 Score=42.46 Aligned_cols=33 Identities=30% Similarity=0.551 Sum_probs=28.4
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEec
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
+.+++++|.|+ |+||.++++.|+..|. ++++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~------~v~~~~ 37 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGA------DVIVLD 37 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC------eEEEEc
Confidence 45678999995 9999999999999996 677776
No 239
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=81.16 E-value=1.1 Score=47.56 Aligned_cols=40 Identities=23% Similarity=0.476 Sum_probs=34.1
Q ss_pred ccccchhHHHhhhhhhhhhhhcccCcccccc-ceeeecccC
Q 003714 137 RAVLNPMAAMFGGIVGQEVVKACSGKFHPLY-QFFYFDSVE 176 (800)
Q Consensus 137 ~~el~PvaA~iGGi~aQEviK~it~k~~Pi~-q~~~fd~~~ 176 (800)
.+-+.|+.+++|++.|+|+||.++|...|+. +.+.||...
T Consensus 183 ~gv~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~~ 223 (240)
T TIGR02355 183 AGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMT 223 (240)
T ss_pred cCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCC
Confidence 4579999999999999999999999888885 566788643
No 240
>PRK08291 ectoine utilization protein EutC; Validated
Probab=81.14 E-value=4.9 Score=44.65 Aligned_cols=145 Identities=12% Similarity=0.137 Sum_probs=77.5
Q ss_pred cccchhHHHhhhhhhhhhhhcccCc------ccccc--ceeeecccCCCCCCCC-CccCCCCccCcchhhhhccCHHHHH
Q 003714 138 AVLNPMAAMFGGIVGQEVVKACSGK------FHPLY--QFFYFDSVESLPTEPL-DSTEFKPINSRYDAQISVFGAKLQK 208 (800)
Q Consensus 138 ~el~PvaA~iGGi~aQEviK~it~k------~~Pi~--q~~~fd~~~~l~~~~l-~~~~~~~~~~RYdrqi~l~G~~~q~ 208 (800)
+.+..+.++++|.-. -.+|.++.- ..|-. -.+.||.....|...+ .... ...-|-+.. ...+.....
T Consensus 53 ~~~~~mp~~~~~~~~-~g~K~~~~~~~N~~~glp~~~g~i~l~d~~tG~~~ai~~d~~~--lt~~rT~a~-~~~a~~~la 128 (330)
T PRK08291 53 GEVDVKTAYIPGLDS-FAIKVSPGFFDNPKLGLPSLNGLMVVLSARTGLVEALLLDNGY--LTDVRTAAA-GAVAARHLA 128 (330)
T ss_pred CcEEEeecccCCCCe-eEEEeccCCCCccccCCCcceEEEEEEeCCCCceEEEEcCCch--HHHHHHHHH-HHHHHHHhC
Confidence 456777777776311 337877642 22322 2345666544443221 1111 111222211 111111111
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHH-hccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 287 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~-~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v 287 (800)
+-..++++|+|+|+.|...+..|+. .|+ ..++|.+ ....|++..++.+.+.. .+
T Consensus 129 ~~~~~~v~IiGaG~~a~~~~~al~~~~~~-----~~V~v~~-------------------R~~~~a~~l~~~~~~~~-g~ 183 (330)
T PRK08291 129 REDASRAAVIGAGEQARLQLEALTLVRPI-----REVRVWA-------------------RDAAKAEAYAADLRAEL-GI 183 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCC-----CEEEEEc-------------------CCHHHHHHHHHHHhhcc-Cc
Confidence 2234689999999999999999885 566 6888874 22446777777665432 23
Q ss_pred eEEEEecccCCCcccccchhhccCccEEEEccCC
Q 003714 288 NIEALQNRVGPETENVFDDTFWENITCVINALDN 321 (800)
Q Consensus 288 ~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn 321 (800)
++..... . .+-+.+.|+|++|+-.
T Consensus 184 ~v~~~~d-----~-----~~al~~aDiVi~aT~s 207 (330)
T PRK08291 184 PVTVARD-----V-----HEAVAGADIIVTTTPS 207 (330)
T ss_pred eEEEeCC-----H-----HHHHccCCEEEEeeCC
Confidence 3333221 1 1335678999999754
No 241
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=81.10 E-value=1.9 Score=39.59 Aligned_cols=85 Identities=18% Similarity=0.251 Sum_probs=52.1
Q ss_pred EEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEEec
Q 003714 215 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQN 294 (800)
Q Consensus 215 VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~~ 294 (800)
|+|+|+|.+|-++++.|...|. .++++|.|.- ++ +.+.+.. +..+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~------~vvvid~d~~-------------------~~----~~~~~~~----~~~i~g 47 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI------DVVVIDRDPE-------------------RV----EELREEG----VEVIYG 47 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS------EEEEEESSHH-------------------HH----HHHHHTT----SEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCCC------EEEEEECCcH-------------------HH----HHHHhcc----cccccc
Confidence 6899999999999999999664 8999986531 11 1222222 223333
Q ss_pred ccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhccc
Q 003714 295 RVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY 334 (800)
Q Consensus 295 ~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~ 334 (800)
.... ...+...-+++++.|+.++++...-..+...++.
T Consensus 48 d~~~--~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~ 85 (116)
T PF02254_consen 48 DATD--PEVLERAGIEKADAVVILTDDDEENLLIALLARE 85 (116)
T ss_dssp -TTS--HHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHH
T ss_pred cchh--hhHHhhcCccccCEEEEccCCHHHHHHHHHHHHH
Confidence 3221 2223333456788888888887766666666554
No 242
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.95 E-value=5.2 Score=43.42 Aligned_cols=92 Identities=17% Similarity=0.254 Sum_probs=57.9
Q ss_pred CHHHHHHHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHH
Q 003714 203 GAKLQKKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAT 281 (800)
Q Consensus 203 G~~~q~~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~ 281 (800)
+....+++.++.|+|=|| .|||-++|+.|+..|. ++.++-. -..+-+.+++.++
T Consensus 3 ~~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~------~l~lvar-------------------~~rrl~~v~~~l~ 57 (282)
T KOG1205|consen 3 GNLFMERLAGKVVLITGASSGIGEALAYELAKRGA------KLVLVAR-------------------RARRLERVAEELR 57 (282)
T ss_pred ccccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCC------ceEEeeh-------------------hhhhHHHHHHHHH
Confidence 345567999999999997 7999999999999998 5554420 1123344555555
Q ss_pred hhCCCceEEEEecccCCCccc--ccc--hhhccCccEEEEcc
Q 003714 282 SINPRLNIEALQNRVGPETEN--VFD--DTFWENITCVINAL 319 (800)
Q Consensus 282 ~~np~v~i~~~~~~v~~~~~~--~~~--~~f~~~~dvVi~a~ 319 (800)
+..|.-++..+.-++++.... .++ ..-+.+.|+.||..
T Consensus 58 ~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNNA 99 (282)
T KOG1205|consen 58 KLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNNA 99 (282)
T ss_pred HhCCcCccEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEecC
Confidence 554433677777777643321 110 12346777777653
No 243
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=80.94 E-value=3.7 Score=50.13 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=29.3
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
|.+++++|.|+ ||||.++++.|+..|. +++++|.
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga------~Vvi~~r 446 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGA------HVVLADL 446 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC------EEEEEeC
Confidence 55678999996 8999999999999997 7888764
No 244
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=80.92 E-value=1.6 Score=49.63 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=29.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
++|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~------~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY------QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC------eEEEEeCCC
Confidence 489999999999999999999997 899998654
No 245
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=80.86 E-value=5.8 Score=41.46 Aligned_cols=87 Identities=21% Similarity=0.218 Sum_probs=47.6
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEEe
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 293 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~~ 293 (800)
+|.|||||+||.-+++. .+-|-. ..-.+.+. |-+..|+..+.+.+...-+
T Consensus 2 ~vgiVGcGaIG~~l~e~-v~~~~~--~~e~v~v~-------------------D~~~ek~~~~~~~~~~~~~-------- 51 (255)
T COG1712 2 KVGIVGCGAIGKFLLEL-VRDGRV--DFELVAVY-------------------DRDEEKAKELEASVGRRCV-------- 51 (255)
T ss_pred eEEEEeccHHHHHHHHH-HhcCCc--ceeEEEEe-------------------cCCHHHHHHHHhhcCCCcc--------
Confidence 78999999999988874 444410 00222333 3344555554443322111
Q ss_pred cccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEE
Q 003714 294 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLL 340 (800)
Q Consensus 294 ~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli 340 (800)
.. + +++....|+|+.|...-..|.|+-+ ..+.++.++
T Consensus 52 s~--------i-de~~~~~DlvVEaAS~~Av~e~~~~-~L~~g~d~i 88 (255)
T COG1712 52 SD--------I-DELIAEVDLVVEAASPEAVREYVPK-ILKAGIDVI 88 (255)
T ss_pred cc--------H-HHHhhccceeeeeCCHHHHHHHhHH-HHhcCCCEE
Confidence 11 1 3455788889888544444444443 445666655
No 246
>PRK08655 prephenate dehydrogenase; Provisional
Probab=80.85 E-value=2.7 Score=48.64 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=26.3
Q ss_pred cEEEEc-CCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 214 KVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 214 ~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+|+||| +|++|..+++.|...|. .++++|.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~------~V~v~~r 32 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF------EVIVTGR 32 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC------EEEEEEC
Confidence 799997 89999999999999886 6788774
No 247
>PRK06398 aldose dehydrogenase; Validated
Probab=80.82 E-value=4.2 Score=42.95 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=45.7
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHH-HHHHHHHHhhCCC
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS-TVAASAATSINPR 286 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka-~vaa~~l~~~np~ 286 (800)
.|++++++|.|+ ||||.++++.|+..|. +++++|.+.-+. . +..+-..|+..+.. +.+.+.+.+....
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~------~Vi~~~r~~~~~---~-~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 72 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS------NVINFDIKEPSY---N-DVDYFKVDVSNKEQVIKGIDYVISKYGR 72 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC------eEEEEeCCcccc---C-ceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 356789999995 7999999999999996 788887653221 1 22233446665442 3334444444434
Q ss_pred ceEEEE
Q 003714 287 LNIEAL 292 (800)
Q Consensus 287 v~i~~~ 292 (800)
+++-.+
T Consensus 73 id~li~ 78 (258)
T PRK06398 73 IDILVN 78 (258)
T ss_pred CCEEEE
Confidence 444433
No 248
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=80.82 E-value=4 Score=49.18 Aligned_cols=89 Identities=11% Similarity=0.183 Sum_probs=60.2
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEE
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 291 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~ 291 (800)
+.+|+|+|.|.+|..+++.|...|+ .++++|.|.- +++.+ ++.. ...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~------~vvvID~d~~-------------------~v~~~----~~~g----~~v 446 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM------RITVLERDIS-------------------AVNLM----RKYG----YKV 446 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC------CEEEEECCHH-------------------HHHHH----HhCC----CeE
Confidence 4689999999999999999999998 8999996641 22222 2211 223
Q ss_pred EecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccc
Q 003714 292 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF 335 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~ 335 (800)
+..+.+. .+.+...-.++.|.||.++|+.+.-..+-..++++
T Consensus 447 ~~GDat~--~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~ 488 (601)
T PRK03659 447 YYGDATQ--LELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQH 488 (601)
T ss_pred EEeeCCC--HHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 3333332 22333334578999999999988877766666654
No 249
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.69 E-value=1.8 Score=47.67 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=28.6
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
||.|||+|.+|+.++-.|++.|++ .++.++|.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~----~ev~l~D~ 33 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLA----SEIVLVDI 33 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCC----CEEEEEEC
Confidence 799999999999999999999973 57999983
No 250
>PRK06720 hypothetical protein; Provisional
Probab=80.69 E-value=4 Score=40.75 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=29.7
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+.++.++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~------~V~l~~r~ 49 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGA------KVIVTDID 49 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCC------EEEEEECC
Confidence 67788999997 5799999999999996 78888754
No 251
>PRK07856 short chain dehydrogenase; Provisional
Probab=80.69 E-value=4 Score=42.70 Aligned_cols=36 Identities=14% Similarity=0.333 Sum_probs=30.8
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
+++++++|.|+ ||||.++++.|+..|. +++++|.+.
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~------~v~~~~r~~ 40 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA------TVVVCGRRA 40 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEeCCh
Confidence 56788999995 8999999999999997 788888654
No 252
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=80.69 E-value=2.5 Score=50.06 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.5
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.|.+++|.|||.|.||.++++.|...|. +++.+|.
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~ 169 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKRAKAFGM------KVLAYDP 169 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECC
Confidence 5889999999999999999999998887 7888774
No 253
>PLN00203 glutamyl-tRNA reductase
Probab=80.63 E-value=1.3 Score=52.17 Aligned_cols=34 Identities=24% Similarity=0.554 Sum_probs=30.7
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEec
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
|.+++|+|||+|.+|..++++|...|+ .+|++++
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~-----~~V~V~n 297 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGC-----TKMVVVN 297 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCC-----CeEEEEe
Confidence 557999999999999999999999998 7888875
No 254
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=80.53 E-value=3.5 Score=43.61 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=28.9
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEec
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
++.+++++|.|+ |+||.++++.|+..|. +++++|
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~------~vv~~~ 41 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGA------TIVFND 41 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC------eEEEEe
Confidence 456788999996 8999999999999997 677765
No 255
>PLN02928 oxidoreductase family protein
Probab=80.45 E-value=1.5 Score=49.05 Aligned_cols=36 Identities=42% Similarity=0.594 Sum_probs=32.1
Q ss_pred HHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 208 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 208 ~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
..|.+++|.|||.|.||.++++.|...|+ +++.+|.
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~------~V~~~dr 190 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGV------KLLATRR 190 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCC------EEEEECC
Confidence 35889999999999999999999998887 7888774
No 256
>PRK07102 short chain dehydrogenase; Provisional
Probab=80.41 E-value=5.6 Score=41.30 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=27.2
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 213 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~------~Vi~~~r~ 34 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA------RLYLAARD 34 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC------EEEEEeCC
Confidence 47899995 9999999999999996 78887743
No 257
>PLN00106 malate dehydrogenase
Probab=80.38 E-value=1.9 Score=47.85 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=32.0
Q ss_pred hcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 211 EDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 211 ~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
...||.|+|+ |.||+.++-.|++.|++ +.|.++|-+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~----~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLV----SELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCC----CEEEEEecCC
Confidence 3468999999 99999999999999985 6899998644
No 258
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=80.35 E-value=6 Score=48.16 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=32.8
Q ss_pred HHHHHHhcCcEEEEcC-CchHHHHHHHHHHh-ccccCCCcceEEecCCc
Q 003714 205 KLQKKLEDAKVFIVGS-GALGCEFLKNVALM-GVSCGNQGKLTITDDDV 251 (800)
Q Consensus 205 ~~q~~L~~~~VlvvG~-GgiG~evlknLa~~-Gv~~~~~g~i~ivD~D~ 251 (800)
.....-++++|+|.|+ |-||+.+++.|... |. +++.+|...
T Consensus 308 ~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~------~V~~l~r~~ 350 (660)
T PRK08125 308 PACSAKRRTRVLILGVNGFIGNHLTERLLRDDNY------EVYGLDIGS 350 (660)
T ss_pred chhhhhcCCEEEEECCCchHHHHHHHHHHhCCCc------EEEEEeCCc
Confidence 3456677889999995 99999999999986 55 788887543
No 259
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=80.30 E-value=4.3 Score=46.04 Aligned_cols=100 Identities=18% Similarity=0.229 Sum_probs=60.1
Q ss_pred hcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceE
Q 003714 211 EDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 289 (800)
Q Consensus 211 ~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i 289 (800)
+..||+|+|+ |.+|.|+++.|..... .+|+.+- ++...|+. +...+|.+.-
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~-----~el~~l~---------------s~~saG~~--------i~~~~~~l~~ 88 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPD-----FEITVMT---------------ADRKAGQS--------FGSVFPHLIT 88 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCC-----CeEEEEE---------------ChhhcCCC--------chhhCccccC
Confidence 4459999998 8999999999988843 4676653 22223332 1122222211
Q ss_pred EEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecccC
Q 003714 290 EALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLG 346 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G 346 (800)
.... .+. . ++..-+++.|+|+.|+.+-.++.++..+ ..+..+|+.++..
T Consensus 89 ~~~~-~~~----~-~~~~~~~~~DvVf~Alp~~~s~~i~~~~--~~g~~VIDlSs~f 137 (381)
T PLN02968 89 QDLP-NLV----A-VKDADFSDVDAVFCCLPHGTTQEIIKAL--PKDLKIVDLSADF 137 (381)
T ss_pred cccc-cee----c-CCHHHhcCCCEEEEcCCHHHHHHHHHHH--hCCCEEEEcCchh
Confidence 0000 000 0 1112247899999999998888888875 3577788765543
No 260
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=80.26 E-value=1.6 Score=48.57 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=31.4
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcc
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 252 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~I 252 (800)
...|+|||+|.+|+.+|..|++.|. +++|+|.+.+
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~------~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL------RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC------eEEEEecccC
Confidence 3469999999999999999999997 8999998764
No 261
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=80.25 E-value=1.7 Score=47.68 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=29.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
.+|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~------~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH------EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC------eeEEEeCCH
Confidence 379999999999999999999997 899998653
No 262
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=80.14 E-value=6 Score=42.50 Aligned_cols=32 Identities=16% Similarity=0.493 Sum_probs=25.0
Q ss_pred cEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 214 KVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 214 ~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+|+|.|+ |.||.++++.|...|- ..+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~----~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHP----DAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCC----CCEEEEecC
Confidence 5899996 9999999999998872 026777653
No 263
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=80.11 E-value=1.7 Score=47.24 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=27.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
.+|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~------~v~i~E~~~ 34 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGI------DVTIIERRP 34 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTC------EEEEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHhccc------ccccchhcc
Confidence 469999999999999999999999 799998754
No 264
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=80.04 E-value=4 Score=44.69 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=28.1
Q ss_pred hcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 211 EDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 211 ~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.+++++|.|+ ||||.++++.|+..|. ++++++.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~------~V~~~~r 38 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW------HVIMACR 38 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC------EEEEEEC
Confidence 4568999995 8999999999999996 7888764
No 265
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=80.00 E-value=1.7 Score=47.83 Aligned_cols=31 Identities=32% Similarity=0.621 Sum_probs=28.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCc-ceEEec
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQG-KLTITD 248 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g-~i~ivD 248 (800)
.||.|||+|.||+.++-.|+.-++ | .+.|+|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~-----~~el~LiD 32 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGL-----GSELVLID 32 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccc-----cceEEEEE
Confidence 479999999999999999999999 6 999997
No 266
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=79.97 E-value=1.8 Score=47.03 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=27.0
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
||+|+|+|++|+.++..|+..|. .+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~------~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR------DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC------ceEEEec
Confidence 79999999999999999999986 7888764
No 267
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=79.93 E-value=4.2 Score=45.19 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=30.8
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+++.++|+|.|+ |=||+.+++.|...|. +++.+|..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~------~V~~~d~~ 48 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ------TVIGLDNF 48 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 456689999995 9999999999999986 78888754
No 268
>PRK06223 malate dehydrogenase; Reviewed
Probab=79.84 E-value=1.9 Score=47.25 Aligned_cols=32 Identities=28% Similarity=0.517 Sum_probs=29.5
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.||.|||+|.+|..++..|+..|+ +.+.++|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~-----~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKEL-----GDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-----eEEEEEEC
Confidence 589999999999999999999998 68999985
No 269
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=79.76 E-value=12 Score=38.71 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=25.2
Q ss_pred cEEEEc-CCchHHHHHHHHHHhccccCCCcceEEec
Q 003714 214 KVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 214 ~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
+|.||| +|.+|+.+++.|+..|- ++++.|
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~------~V~v~~ 31 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGN------KIIIGS 31 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCC------EEEEEE
Confidence 699997 89999999999999884 677765
No 270
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=79.73 E-value=7 Score=43.61 Aligned_cols=106 Identities=12% Similarity=0.223 Sum_probs=61.6
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEE
Q 003714 213 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 291 (800)
Q Consensus 213 ~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~ 291 (800)
.+|+|+|+ |-+|.|+++.|...+. +...+..+ ...+..|++ +...+-+..++.
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~h---P~~~l~~v---------------~s~~~aG~~--------l~~~~~~l~~~~ 58 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDF---PVGTLHLL---------------ASSESAGHS--------VPFAGKNLRVRE 58 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCC---CceEEEEE---------------ECcccCCCe--------eccCCcceEEee
Confidence 58999997 9999999999997665 22344333 222234543 110010111111
Q ss_pred EecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecc-cCcccceEEEeCCc
Q 003714 292 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGT-LGAKCNTQMVIPHL 358 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt-~G~~G~v~~~ip~~ 358 (800)
.. . .+ ++++|+|+-|+.+-.++.++... ...++.+|+.+. .-+. .+..++|.+
T Consensus 59 ~~-------~----~~-~~~vD~vFla~p~~~s~~~v~~~-~~~G~~VIDlS~~fR~~-~~pl~lPEv 112 (336)
T PRK05671 59 VD-------S----FD-FSQVQLAFFAAGAAVSRSFAEKA-RAAGCSVIDLSGALPSA-QAPNVVPEV 112 (336)
T ss_pred CC-------h----HH-hcCCCEEEEcCCHHHHHHHHHHH-HHCCCeEEECchhhcCC-CCCEEeccc
Confidence 10 0 12 37899999999987677766654 556888886443 3332 444566654
No 271
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=79.68 E-value=1.7 Score=48.23 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=29.2
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcccc-CCCcceEEec
Q 003714 213 AKVFIVGS-GALGCEFLKNVALMGVSC-GNQGKLTITD 248 (800)
Q Consensus 213 ~~VlvvG~-GgiG~evlknLa~~Gv~~-~~~g~i~ivD 248 (800)
.||.|+|+ |.+|+.++-.|+..|++. ...-.|+|+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~D 40 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLE 40 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEe
Confidence 58999999 999999999999999851 1111789987
No 272
>PRK06057 short chain dehydrogenase; Provisional
Probab=79.64 E-value=1.7 Score=45.57 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=30.4
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
++.+++|+|+|+ |+||..+++.|+..|. +++++|.
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~------~v~~~~r 39 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA------TVVVGDI 39 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC------EEEEEeC
Confidence 367789999997 9999999999999997 7888764
No 273
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=79.64 E-value=1.9 Score=47.29 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=28.2
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
.+|.|||+|++|+.++..|+..|. .++++|.+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~------~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGH------DVTLWARD 33 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------EEEEEECC
Confidence 379999999999999999999987 68888754
No 274
>PRK06940 short chain dehydrogenase; Provisional
Probab=79.62 E-value=4.3 Score=43.47 Aligned_cols=31 Identities=26% Similarity=0.541 Sum_probs=25.9
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
++.++|.|+||||.++++.|+ .|. +++++|.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~------~Vv~~~r 32 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK------KVLLADY 32 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC------EEEEEeC
Confidence 456889999999999999996 675 7888764
No 275
>PRK05717 oxidoreductase; Validated
Probab=79.58 E-value=2.5 Score=44.41 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=29.9
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+++++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~------~v~~~~~~ 43 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGW------QVVLADLD 43 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCC------EEEEEcCC
Confidence 45678999995 8999999999999996 78888754
No 276
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=79.54 E-value=1.8 Score=48.07 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=28.8
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcccc-CCCcceEEec
Q 003714 213 AKVFIVGS-GALGCEFLKNVALMGVSC-GNQGKLTITD 248 (800)
Q Consensus 213 ~~VlvvG~-GgiG~evlknLa~~Gv~~-~~~g~i~ivD 248 (800)
.||.|||+ |.+|+.++-.|+..|++. ...-.|+|+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~D 41 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLD 41 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEe
Confidence 58999998 999999999999999851 0111788886
No 277
>PRK06181 short chain dehydrogenase; Provisional
Probab=79.43 E-value=4.5 Score=42.52 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=26.5
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 213 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 213 ~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.+|+|.|+ |+||.++++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~------~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA------QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 47899997 9999999999998886 7888764
No 278
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=79.39 E-value=5 Score=44.90 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=56.5
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhccccCCCcceE-EecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEE
Q 003714 213 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLT-ITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 290 (800)
Q Consensus 213 ~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~-ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~ 290 (800)
.||+|+|+ |.+|.++++.|...-. -++. +++.+. ..|+. +....|.+...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~-----~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~ 52 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE-----VEITYLVSSRE---------------SAGKP--------VSEVHPHLRGL 52 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC-----ceEEEEeccch---------------hcCCC--------hHHhCcccccc
Confidence 37999999 9999999999986522 3555 445331 12321 11112222110
Q ss_pred EEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecc
Q 003714 291 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGT 344 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt 344 (800)
. ...+.+.+ ..++..+.|+|+.|+.+-.++.++... ...|+.+|+.+.
T Consensus 53 ~-~~~~~~~~----~~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~ 100 (346)
T TIGR01850 53 V-DLNLEPID----EEEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSA 100 (346)
T ss_pred C-CceeecCC----HHHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCCh
Confidence 0 00011000 023445899999999998888777765 346788887554
No 279
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.35 E-value=1.9 Score=47.60 Aligned_cols=31 Identities=16% Similarity=0.381 Sum_probs=27.6
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+|.|+|+|++|+.++..|+..|. .+++++.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~------~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI------SVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC------eEEEEecC
Confidence 69999999999999999999996 78887754
No 280
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=79.28 E-value=0.78 Score=54.06 Aligned_cols=89 Identities=22% Similarity=0.412 Sum_probs=58.3
Q ss_pred hhhhhhcccCcccc--ccceeeecccCCCCCCCCCccCCCCccCcchhhhhccCHHHH------------------HHHh
Q 003714 152 GQEVVKACSGKFHP--LYQFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQ------------------KKLE 211 (800)
Q Consensus 152 aQEviK~it~k~~P--i~q~~~fd~~~~l~~~~l~~~~~~~~~~RYdrqi~l~G~~~q------------------~~L~ 211 (800)
-.|++.++..+|-| +-|| +.+.. ......-+||...+.+|..+-| ++|.
T Consensus 252 ~defv~av~~~fGp~~~I~~---EDf~~--------~~af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~ 320 (581)
T PLN03129 252 VDEFMEAVKQRWGPKVLVQF---EDFAN--------KNAFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLA 320 (581)
T ss_pred HHHHHHHHHHHhCCccEEeh---hhcCC--------ccHHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchh
Confidence 57889999888877 3333 32211 1111223566656666654433 4788
Q ss_pred cCcEEEEcCCchHHHHHHHHHHh-----ccccCC-CcceEEecCCc
Q 003714 212 DAKVFIVGSGALGCEFLKNVALM-----GVSCGN-QGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~-----Gv~~~~-~g~i~ivD~D~ 251 (800)
+.||+++|+|+-|.-+++.|+.. |+...+ ..+|.++|.+-
T Consensus 321 d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~G 366 (581)
T PLN03129 321 DQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKG 366 (581)
T ss_pred hceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCC
Confidence 99999999999999999999885 541111 25899999763
No 281
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=79.22 E-value=5.8 Score=44.39 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=20.9
Q ss_pred cEEEEcCCchHHHHHHHHHHhc
Q 003714 214 KVFIVGSGALGCEFLKNVALMG 235 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~G 235 (800)
||.|+|+|+.|+.++..|+..|
T Consensus 1 kI~VIGaG~wGtALA~~la~ng 22 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENA 22 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcC
Confidence 6899999999999999999988
No 282
>PRK07574 formate dehydrogenase; Provisional
Probab=79.19 E-value=1.9 Score=49.04 Aligned_cols=35 Identities=40% Similarity=0.564 Sum_probs=31.9
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.|.+++|.|||.|.||.++++.|...|+ +++.+|.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~------~V~~~dr 223 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV------KLHYTDR 223 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECC
Confidence 5889999999999999999999999998 7888774
No 283
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=79.05 E-value=5.7 Score=41.86 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=28.6
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEec
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
.|++++++|.|+ ||||.++++.|+..|. ++++++
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~------~v~~~~ 39 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGV------NIAFTY 39 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEc
Confidence 467889999996 8999999999999997 666653
No 284
>PTZ00325 malate dehydrogenase; Provisional
Probab=79.04 E-value=1.7 Score=48.05 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=31.0
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
++-.||.|+|+ |.||+.++-.|+..|++ ..|.++|-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~----~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHV----SELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCC----CEEEEEec
Confidence 45569999998 99999999999988874 68999985
No 285
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=79.02 E-value=1.7 Score=48.13 Aligned_cols=30 Identities=33% Similarity=0.451 Sum_probs=26.3
Q ss_pred HHHHHhcCcEEEEcCCchHHHHHHHHHHhc
Q 003714 206 LQKKLEDAKVFIVGSGALGCEFLKNVALMG 235 (800)
Q Consensus 206 ~q~~L~~~~VlvvG~GgiG~evlknLa~~G 235 (800)
.-..+.+++|.|+|+|.||..+++.|..-|
T Consensus 156 ~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg 185 (336)
T KOG0069|consen 156 LGYDLEGKTVGILGLGRIGKAIAKRLKPFG 185 (336)
T ss_pred ccccccCCEEEEecCcHHHHHHHHhhhhcc
Confidence 345789999999999999999999998844
No 286
>PRK06125 short chain dehydrogenase; Provisional
Probab=78.98 E-value=5.7 Score=41.73 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=29.3
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+++++++|.|+ ||+|.++++.|+..|. +++++|.
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~------~V~~~~r 39 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC------HLHLVAR 39 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeC
Confidence 56788999997 7999999999999997 7888764
No 287
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=78.97 E-value=2.1 Score=42.58 Aligned_cols=38 Identities=26% Similarity=0.503 Sum_probs=29.2
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcc
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 252 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~I 252 (800)
.|..++++|+|-|-+|.-+|+.|..+|. +++|+|-|.+
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga------~V~V~e~DPi 57 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGA------RVTVTEIDPI 57 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-------EEEEE-SSHH
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCC------EEEEEECChH
Confidence 5678899999999999999999999997 9999987653
No 288
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=78.95 E-value=3.9 Score=44.60 Aligned_cols=78 Identities=10% Similarity=0.250 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhhhccccchhHHHhhhhhhhhhhhcccCccccccceeeecccCC
Q 003714 98 SEEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVES 177 (800)
Q Consensus 98 ~~~D~~~l~~i~~~i~~~~~~~~~~~l~~~~i~~~~~~~~~el~PvaA~iGGi~aQEviK~it~k~~Pi~q~~~fd~~~~ 177 (800)
++++.+-+++-+.+..+++. ...++..++.-+....=-.++...|+|.++.|-|++|.+|.-+.|++||+.|.+.+.
T Consensus 241 d~~hI~wi~er~~eRA~ef~---I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG 317 (422)
T KOG2015|consen 241 DPEHIEWIVERSNERANEFN---ITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEEG 317 (422)
T ss_pred CHHHHHHHHHHHHHHhhhcc---cccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeecccc
Confidence 46777777776666666552 223444444433322222233444899999999999999999999999999988766
Q ss_pred C
Q 003714 178 L 178 (800)
Q Consensus 178 l 178 (800)
.
T Consensus 318 ~ 318 (422)
T KOG2015|consen 318 I 318 (422)
T ss_pred e
Confidence 5
No 289
>PRK07774 short chain dehydrogenase; Provisional
Probab=78.90 E-value=2.7 Score=43.68 Aligned_cols=35 Identities=20% Similarity=0.510 Sum_probs=29.8
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+++++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~------~vi~~~r~ 39 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGA------SVVVADIN 39 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56678999997 9999999999999996 78887643
No 290
>PRK05872 short chain dehydrogenase; Provisional
Probab=78.81 E-value=5.6 Score=43.05 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=29.5
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+.+++++|.|+ ||||.++++.|+..|. ++++++.
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~------~V~~~~r 41 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA------KLALVDL 41 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeC
Confidence 56788999996 8999999999999997 7888764
No 291
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=78.74 E-value=7.6 Score=42.62 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=33.2
Q ss_pred ccCccEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEEEeCCcc
Q 003714 309 WENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLT 359 (800)
Q Consensus 309 ~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~~G~v~~~ip~~t 359 (800)
|.+.|+|++++.+. +.......+..+|+.+|+-...- .+.+++|.+.
T Consensus 68 ~~dIDiVf~AT~a~-~H~e~a~~a~eaGk~VID~sPA~---~~PlvVP~VN 114 (302)
T PRK08300 68 FDDIDIVFDATSAG-AHVRHAAKLREAGIRAIDLTPAA---IGPYCVPAVN 114 (302)
T ss_pred CCCCCEEEECCCHH-HHHHHHHHHHHcCCeEEECCccc---cCCcccCcCC
Confidence 46799999998664 44555667788899988755443 3467777654
No 292
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=78.74 E-value=3.4 Score=45.25 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=25.7
Q ss_pred EEcCCchHHHHHHHHHHhccccCCCcceEEec
Q 003714 217 IVGSGALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 217 vvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
|||+|.+|+.++-.|++.|++ ++|.|+|
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~----~el~L~D 28 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIA----DEIVLID 28 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCC----CEEEEEe
Confidence 689999999999999999985 6899997
No 293
>PRK08862 short chain dehydrogenase; Provisional
Probab=78.70 E-value=4.4 Score=42.20 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=28.1
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEec
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
+++++++|.|+ +|||-++++.|+..|. ++.+++
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~------~V~~~~ 36 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGA------TLILCD 36 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCC------EEEEEc
Confidence 45678999996 6899999999999997 777765
No 294
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.48 E-value=2.1 Score=47.32 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=28.4
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
.+|.|+|+|++|+.++..|+..|. .++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~------~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV------PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC------eEEEEeCC
Confidence 479999999999999999999996 78888753
No 295
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=78.42 E-value=2 Score=47.70 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=30.1
Q ss_pred HHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEec
Q 003714 208 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 208 ~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
..|++++|.|||+|.+|..++++|..+|+ ++++.+
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~------~Vvv~~ 47 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV------DVVVGL 47 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCC------EEEEEE
Confidence 46788899999999999999999999997 565543
No 296
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=78.38 E-value=2.3 Score=46.35 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=30.9
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccc
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEK 254 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~ 254 (800)
.|+|||+|-+|+.+|..|++.|. +++|+|.+.+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~------~V~l~e~~~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH------SVTLLERGDIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS------EEEEEESSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC------eEEEEeeccccc
Confidence 38999999999999999999997 999999885533
No 297
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.36 E-value=1.9 Score=50.17 Aligned_cols=35 Identities=23% Similarity=0.456 Sum_probs=31.0
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+...+|+|+|+|++|.+++..|+..|. +++++|..
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~------~V~~~d~~ 48 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA------RVTVVDDG 48 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 456789999999999999999999997 79998854
No 298
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=78.24 E-value=2.1 Score=48.50 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=29.4
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
+|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~------~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH------EVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC------EEEEEeCCC
Confidence 69999999999999999999997 899999763
No 299
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=78.17 E-value=2.3 Score=46.88 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=29.4
Q ss_pred cEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 214 KVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 214 ~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
||.|+|+ |.+|+.++-.|+..|++ ..|.|+|-+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~----~elvL~Di~ 34 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYV----SELSLYDIA 34 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCC----cEEEEecCC
Confidence 6899999 99999999999999984 579999864
No 300
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=78.16 E-value=7.3 Score=43.61 Aligned_cols=107 Identities=15% Similarity=0.253 Sum_probs=63.7
Q ss_pred CcEEEEcC-CchHHHHHHHHHH-hccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEE
Q 003714 213 AKVFIVGS-GALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 290 (800)
Q Consensus 213 ~~VlvvG~-GgiG~evlknLa~-~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~ 290 (800)
.+|.|||+ |.+|.|+++.|.. ..+ +-+++.++. .+...|+.= .+. ..++.+.
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f---~v~~l~~~a---------------S~~saGk~~------~~~--~~~l~v~ 59 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKF---NIAEVTLLS---------------SKRSAGKTV------QFK--GREIIIQ 59 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCC---CcccEEEEE---------------CcccCCCCe------eeC--CcceEEE
Confidence 58999998 9999999999995 555 113454432 333455531 000 1112222
Q ss_pred EEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEec-ccCcccceEEEeCCc
Q 003714 291 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG-TLGAKCNTQMVIPHL 358 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sg-t~G~~G~v~~~ip~~ 358 (800)
.. +++-|++.|+|+.|+.+-.++.+.... ...|.++|+.+ ..-+.-.+..++|.+
T Consensus 60 ~~------------~~~~~~~~Divf~a~~~~~s~~~~~~~-~~~G~~VID~Ss~fR~~~~vplvvPEv 115 (347)
T PRK06728 60 EA------------KINSFEGVDIAFFSAGGEVSRQFVNQA-VSSGAIVIDNTSEYRMAHDVPLVVPEV 115 (347)
T ss_pred eC------------CHHHhcCCCEEEECCChHHHHHHHHHH-HHCCCEEEECchhhcCCCCCCeEeCCc
Confidence 21 122247899999999988888777764 45678888633 333333444555554
No 301
>PRK12743 oxidoreductase; Provisional
Probab=78.11 E-value=5.4 Score=41.90 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=25.4
Q ss_pred cCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEec
Q 003714 212 DAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 212 ~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
.++|+|.|+ |+||.++++.|+..|. ++.+++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~------~V~~~~ 33 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF------DIGITW 33 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC------EEEEEe
Confidence 457899985 8999999999999997 666653
No 302
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=78.10 E-value=2.1 Score=46.83 Aligned_cols=35 Identities=17% Similarity=0.480 Sum_probs=30.9
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+.+++|+|+|+|++|..+++.|..+|. +++++|.+
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga------~V~v~~r~ 184 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA------NVTVGARK 184 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 567899999999999999999999997 78888743
No 303
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=78.06 E-value=6.4 Score=42.48 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.6
Q ss_pred cCcEEEEcCCchHHHHHHHHHHh
Q 003714 212 DAKVFIVGSGALGCEFLKNVALM 234 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~ 234 (800)
..||.|||+|.+|..++++|...
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~ 28 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRG 28 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhc
Confidence 46899999999999999999864
No 304
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=77.99 E-value=4.7 Score=45.02 Aligned_cols=90 Identities=20% Similarity=0.274 Sum_probs=53.2
Q ss_pred cEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEE
Q 003714 214 KVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 292 (800)
Q Consensus 214 ~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~ 292 (800)
+|+|||+ |.+|.|+++.|+..|. +..++.+ +.+..+.|+.=. ..+ ..+...
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~h---p~~~l~~---------------~as~~~~g~~~~--------~~~--~~~~~~ 52 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNF---PIDKLVL---------------LASDRSAGRKVT--------FKG--KELEVN 52 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCC---ChhhEEE---------------EeccccCCCeee--------eCC--eeEEEE
Confidence 6899995 9999999999998766 2234433 223334444210 001 111111
Q ss_pred ecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEe
Q 003714 293 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLES 342 (800)
Q Consensus 293 ~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~s 342 (800)
. +. ..+ +.+.|+|+.|+.+..++.+..... ..|..+|+.
T Consensus 53 ~--~~-------~~~-~~~~D~v~~a~g~~~s~~~a~~~~-~~G~~VID~ 91 (339)
T TIGR01296 53 E--AK-------IES-FEGIDIALFSAGGSVSKEFAPKAA-KCGAIVIDN 91 (339)
T ss_pred e--CC-------hHH-hcCCCEEEECCCHHHHHHHHHHHH-HCCCEEEEC
Confidence 1 11 122 478999999999998888776553 345556653
No 305
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=77.98 E-value=2 Score=49.10 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=30.7
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+.+.+|+|+|+|.+|..+++.+..+|. +++++|.|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga------~ViV~d~d 234 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA------RVIVTEVD 234 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEECC
Confidence 567899999999999999999999997 68888744
No 306
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=77.96 E-value=2.2 Score=47.60 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=29.9
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcc
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 252 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~I 252 (800)
.|+|||+|-+|+.+|..|++.|. +++|+|...+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~------~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK------KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC------eEEEEeccCC
Confidence 58999999999999999999997 7999998654
No 307
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=77.86 E-value=6.4 Score=42.31 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=19.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHhc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMG 235 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~G 235 (800)
.||.|||||+||..+++.|..-+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~ 25 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADA 25 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCC
Confidence 58999999999999999986543
No 308
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=77.85 E-value=1.2 Score=51.27 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=31.5
Q ss_pred hccCHHHH----HHHhcCcEEEEcCCchHHHHHHHHHHhcc
Q 003714 200 SVFGAKLQ----KKLEDAKVFIVGSGALGCEFLKNVALMGV 236 (800)
Q Consensus 200 ~l~G~~~q----~~L~~~~VlvvG~GgiG~evlknLa~~Gv 236 (800)
++|+.+.. ..|++++|+|||+|++|...+.||--+|+
T Consensus 20 r~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGv 60 (487)
T PRK05225 20 RFMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGL 60 (487)
T ss_pred eecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccc
Confidence 45655443 78999999999999999999999888898
No 309
>PRK08643 acetoin reductase; Validated
Probab=77.64 E-value=5.2 Score=41.87 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=27.4
Q ss_pred cCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 212 DAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+++++|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~------~v~~~~r~ 35 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF------KVAIVDYN 35 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 457888885 8999999999999997 78887743
No 310
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.59 E-value=2.1 Score=44.38 Aligned_cols=35 Identities=23% Similarity=0.472 Sum_probs=30.0
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+++++++|+|+ |++|.++++.|+..|. ++++++.+
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~------~V~~~~r~ 38 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGA------RVVVTDRN 38 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56789999996 8999999999999997 68887754
No 311
>PRK13529 malate dehydrogenase; Provisional
Probab=77.57 E-value=1.1 Score=52.83 Aligned_cols=90 Identities=23% Similarity=0.481 Sum_probs=60.2
Q ss_pred hhhhhhcccCccccccceeeecccCCCCCCCCCccCCCCccCcchhhhhccCHHHH------------------HHHhcC
Q 003714 152 GQEVVKACSGKFHPLYQFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQ------------------KKLEDA 213 (800)
Q Consensus 152 aQEviK~it~k~~Pi~q~~~fd~~~~l~~~~l~~~~~~~~~~RYdrqi~l~G~~~q------------------~~L~~~ 213 (800)
-.|.+.++...| |-- .+.|..+.. ......-+||...+.+|..+-| .+|.+.
T Consensus 227 ~defv~av~~~~-P~~-~I~~EDf~~--------~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~ 296 (563)
T PRK13529 227 VDEFVQAVKRRF-PNA-LLQFEDFAQ--------KNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQ 296 (563)
T ss_pred HHHHHHHHHHhC-CCe-EEehhhcCC--------chHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhc
Confidence 468899999988 653 444544322 1111223567766766654433 468889
Q ss_pred cEEEEcCCchHHHHHHHHHH----hccccC-CCcceEEecCCc
Q 003714 214 KVFIVGSGALGCEFLKNVAL----MGVSCG-NQGKLTITDDDV 251 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~----~Gv~~~-~~g~i~ivD~D~ 251 (800)
||+++|+|+.|.-+++.|+. .|+.-. -..+|.++|.+-
T Consensus 297 riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~G 339 (563)
T PRK13529 297 RIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQG 339 (563)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence 99999999999999999887 587211 125899999763
No 312
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.54 E-value=5.2 Score=41.99 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=29.3
Q ss_pred HhcCcEEEEcCC---chHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGSG---ALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~G---giG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
|+.++|+|.|++ |||..+++.|+..|. ++++++..
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~------~vi~~~r~ 40 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI------DIFFTYWS 40 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC------cEEEEcCC
Confidence 456789999984 799999999999996 78887654
No 313
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=77.42 E-value=1.7 Score=45.60 Aligned_cols=40 Identities=28% Similarity=0.502 Sum_probs=34.2
Q ss_pred hccccchhHHHhhhhhhhhhhhcccCccccc-cceeeeccc
Q 003714 136 ARAVLNPMAAMFGGIVGQEVVKACSGKFHPL-YQFFYFDSV 175 (800)
Q Consensus 136 ~~~el~PvaA~iGGi~aQEviK~it~k~~Pi-~q~~~fd~~ 175 (800)
..+-++|+++++|+++++|++|.++|.-.|+ .+++.||..
T Consensus 179 ~~~~~~~~~~~~a~l~a~e~i~~l~g~~~~~~~~~~~~d~~ 219 (228)
T cd00757 179 EAGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDAL 219 (228)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECC
Confidence 4567999999999999999999999987665 577788874
No 314
>PRK12744 short chain dehydrogenase; Provisional
Probab=77.40 E-value=5.3 Score=41.91 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=23.9
Q ss_pred HhcCcEEEEc-CCchHHHHHHHHHHhcc
Q 003714 210 LEDAKVFIVG-SGALGCEFLKNVALMGV 236 (800)
Q Consensus 210 L~~~~VlvvG-~GgiG~evlknLa~~Gv 236 (800)
|++++++|.| .|+||.++++.|+..|.
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~ 33 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGA 33 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC
Confidence 5667899999 48999999999999997
No 315
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=77.34 E-value=7.1 Score=42.57 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=27.7
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
...+++|+|+|++|...+..+..+|. ..+.++|.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~-----~~v~~~~~ 177 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGG-----SPPAVWET 177 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-----ceEEEeCC
Confidence 45689999999999999988888898 56766653
No 316
>PRK06841 short chain dehydrogenase; Provisional
Probab=77.23 E-value=2.5 Score=44.23 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=29.4
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+.+++|+|.|+ |+||.++++.|+..|. ++++++.
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~------~Vi~~~r 47 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGA------RVALLDR 47 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeC
Confidence 56789999996 9999999999999997 6777764
No 317
>PRK15076 alpha-galactosidase; Provisional
Probab=77.14 E-value=6.3 Score=45.52 Aligned_cols=107 Identities=19% Similarity=0.193 Sum_probs=58.6
Q ss_pred CcEEEEcCCchHHHHHH--HHH-HhccccCCCcceEEecCCcccccCCCcccccccCcccccH-HHH-HHHHHHhhCCCc
Q 003714 213 AKVFIVGSGALGCEFLK--NVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK-STV-AASAATSINPRL 287 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlk--nLa-~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~K-a~v-aa~~l~~~np~v 287 (800)
.||.|||+|++|...+- .++ ..++. .+.|+++|-|. .+.+ +.. +.+.+....+.+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~---~~evvLvDid~-----------------er~~~~~~l~~~~~~~~~~~~ 61 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALR---DAEIALMDIDP-----------------ERLEESEIVARKLAESLGASA 61 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCC---CCEEEEECCCH-----------------HHHHHHHHHHHHHHHhcCCCe
Confidence 48999999999855443 665 33331 14899998432 1111 112 333334445556
Q ss_pred eEEEEecccCCCcccccchhhccCccEEEEccCCH--HHHHHHh-hhcccccccEEEecccCccc
Q 003714 288 NIEALQNRVGPETENVFDDTFWENITCVINALDNV--NARLYVD-QRCLYFQKPLLESGTLGAKC 349 (800)
Q Consensus 288 ~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~--~ar~~l~-~~c~~~~~pli~sgt~G~~G 349 (800)
+|+..... .+-+++.|+||.+.--. ++++..+ +...++|+----.-+.|..|
T Consensus 62 ~i~~ttD~----------~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG 116 (431)
T PRK15076 62 KITATTDR----------REALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGG 116 (431)
T ss_pred EEEEECCH----------HHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccc
Confidence 66643210 12357899999987653 4444344 56667776411114555555
No 318
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=77.14 E-value=2.9 Score=44.67 Aligned_cols=43 Identities=23% Similarity=0.450 Sum_probs=32.7
Q ss_pred HHHhcCcEEEEcCCchHHHHHHHHHHh----cccc-CCCcceEEecCC
Q 003714 208 KKLEDAKVFIVGSGALGCEFLKNVALM----GVSC-GNQGKLTITDDD 250 (800)
Q Consensus 208 ~~L~~~~VlvvG~GgiG~evlknLa~~----Gv~~-~~~g~i~ivD~D 250 (800)
++|++.||+++|+|+-|+-+++.|+.. |+.- .-..+|.++|.+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~ 68 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSK 68 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETT
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEecc
Confidence 358999999999999999999999999 8821 002689999976
No 319
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=77.10 E-value=7.7 Score=41.73 Aligned_cols=36 Identities=14% Similarity=0.014 Sum_probs=28.7
Q ss_pred cCccEEEEccCCHHHHHHHhhhcccccccEEEecccCc
Q 003714 310 ENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGA 347 (800)
Q Consensus 310 ~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~G~ 347 (800)
...|+||+++ ++.+-..+-..|..+++|++.+- .|+
T Consensus 67 ~~~DvVIdfT-~p~~~~~~~~~al~~g~~vVigt-tg~ 102 (266)
T TIGR00036 67 TDPDVLIDFT-TPEGVLNHLKFALEHGVRLVVGT-TGF 102 (266)
T ss_pred CCCCEEEECC-ChHHHHHHHHHHHHCCCCEEEEC-CCC
Confidence 4589999998 77777788889999999999543 364
No 320
>PRK08374 homoserine dehydrogenase; Provisional
Probab=77.09 E-value=6 Score=44.11 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=23.7
Q ss_pred cCccEEEEccCCHHHHHHHhhhcccccccEEEec
Q 003714 310 ENITCVINALDNVNARLYVDQRCLYFQKPLLESG 343 (800)
Q Consensus 310 ~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sg 343 (800)
...|+||+++....++.+.. .|...+++++.+.
T Consensus 90 ~~~DVvVd~t~~~~a~~~~~-~al~~G~~VVtan 122 (336)
T PRK08374 90 IDADIVVDVTNDKNAHEWHL-EALKEGKSVVTSN 122 (336)
T ss_pred CCCCEEEECCCcHHHHHHHH-HHHhhCCcEEECC
Confidence 36899999997655555444 5667899988544
No 321
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=77.05 E-value=3.9 Score=42.57 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=31.2
Q ss_pred HHHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 208 KKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 208 ~~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
..+++++|+|.|+ |+||..+++.|+..|. +++++|.+
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~------~Vi~~~r~ 45 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA------TVILLGRT 45 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC------cEEEEeCC
Confidence 3567889999985 8899999999999886 88888764
No 322
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=76.94 E-value=2.2 Score=48.67 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=31.6
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
+.+++|+|+|+|.+|.-+++.+...|. +++++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga------~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA------RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC------EEEEEeCCh
Confidence 678999999999999999999999997 688887543
No 323
>PRK07680 late competence protein ComER; Validated
Probab=76.83 E-value=7.8 Score=41.60 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=25.5
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEec
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
+|.|||+|.+|+.++..|...|.. ....+++.|
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~--~~~~v~v~~ 34 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAV--KPSQLTITN 34 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCC--CcceEEEEC
Confidence 699999999999999999998841 112466655
No 324
>PRK05442 malate dehydrogenase; Provisional
Probab=76.82 E-value=2.3 Score=47.14 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=29.1
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcccc-CCCcceEEec
Q 003714 213 AKVFIVGS-GALGCEFLKNVALMGVSC-GNQGKLTITD 248 (800)
Q Consensus 213 ~~VlvvG~-GgiG~evlknLa~~Gv~~-~~~g~i~ivD 248 (800)
.||.|+|+ |.+|+.++-.|+..|+.. +..-.|.|+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiD 42 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLE 42 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEe
Confidence 58999998 999999999999999851 1111789987
No 325
>PRK07109 short chain dehydrogenase; Provisional
Probab=76.76 E-value=4.9 Score=44.53 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=29.1
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+.+++|+|.|+ ||||.++++.|+..|. ++++++.
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~------~Vvl~~R 40 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGA------KVVLLAR 40 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEEC
Confidence 56678999996 8999999999999997 7888763
No 326
>PRK07035 short chain dehydrogenase; Provisional
Probab=76.74 E-value=3.2 Score=43.30 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=29.9
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+++++++|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~------~Vi~~~r~ 41 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA------HVIVSSRK 41 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56778999995 8999999999999996 78888753
No 327
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=76.62 E-value=2.4 Score=47.95 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=30.7
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+...+|+|+|+|.+|..+++.|..+|. +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa------~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA------TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC------eEEEEECC
Confidence 456789999999999999999999998 68998853
No 328
>PRK07677 short chain dehydrogenase; Provisional
Probab=76.56 E-value=6.1 Score=41.33 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=27.1
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 213 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
++++|.|+ ||||..+++.|+..|. +++++|.+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~------~Vi~~~r~ 34 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA------NVVITGRT 34 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 57899996 7899999999999997 78887654
No 329
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=76.49 E-value=2.8 Score=46.69 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=30.7
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCccc
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE 253 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie 253 (800)
.|+|||+|-+|+.+|..|+..|. +++|+|.+.+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~------~V~vle~~~~~ 35 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGL------SVTVIERSSRA 35 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC------eEEEEeCCCCC
Confidence 58999999999999999999997 89999987653
No 330
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=76.49 E-value=2.4 Score=47.65 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=30.2
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
..|+|||+|..|+.++..|++.|+ +++|+|.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~------~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGA------SVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCC------eEEEEeCCC
Confidence 479999999999999999999998 899999864
No 331
>PRK06185 hypothetical protein; Provisional
Probab=76.44 E-value=2.6 Score=47.67 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=31.3
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
.+..|+|||+|..|+.++..|++.|+ +++|+|.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~------~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGV------DVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC------cEEEEecCC
Confidence 34679999999999999999999998 899999763
No 332
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=76.38 E-value=2.4 Score=45.82 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=63.5
Q ss_pred HHHhcCcEEEEcCCchHHHHHHHHHHh----ccccCC-CcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHh
Q 003714 208 KKLEDAKVFIVGSGALGCEFLKNVALM----GVSCGN-QGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATS 282 (800)
Q Consensus 208 ~~L~~~~VlvvG~GgiG~evlknLa~~----Gv~~~~-~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~ 282 (800)
++|.+.||+++|+|+-|+-+++.|... |++-.+ ..+|.++|.+-+=..+ | .|+-..|...+..
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r------~~l~~~~~~~a~~---- 88 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--R------KDLTPFKKPFARK---- 88 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--C------CcchHHHHHHHhh----
Confidence 468889999999999999999999998 762111 2589999965322211 1 1233333333322
Q ss_pred hCCCceEEEEecccCCCcccccchhhcc--CccEEEEccC--CHHHHHHHhhhcccccccEEEec
Q 003714 283 INPRLNIEALQNRVGPETENVFDDTFWE--NITCVINALD--NVNARLYVDQRCLYFQKPLLESG 343 (800)
Q Consensus 283 ~np~v~i~~~~~~v~~~~~~~~~~~f~~--~~dvVi~a~D--n~~ar~~l~~~c~~~~~pli~sg 343 (800)
.++ .... .+ .+.++ +.|++|-+.. ..=.+..+..++.....|+|..-
T Consensus 89 ~~~--------~~~~----~L--~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaL 139 (279)
T cd05312 89 DEE--------KEGK----SL--LEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFAL 139 (279)
T ss_pred cCc--------ccCC----CH--HHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence 222 0000 11 12344 6677776653 33445666777766677777543
No 333
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.38 E-value=2.5 Score=46.54 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=29.7
Q ss_pred cEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 214 KVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 214 ~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
||.|||+ |.+|+.++-.|+..|++ ..|.|+|-.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~----~elvLiDi~ 35 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLV----SELALYDIV 35 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCC----cEEEEEecC
Confidence 7999999 99999999999999984 689999854
No 334
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=76.37 E-value=2.3 Score=48.31 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=28.8
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+|+|||+|..|+..+..|++.|+ ++.|+|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGI------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCC------cEEEEecC
Confidence 69999999999999999999998 89999864
No 335
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=76.36 E-value=6.9 Score=40.66 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=21.7
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcc
Q 003714 213 AKVFIVGS-GALGCEFLKNVALMGV 236 (800)
Q Consensus 213 ~~VlvvG~-GgiG~evlknLa~~Gv 236 (800)
++|+|.|+ |+||..+++.|+..|.
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~ 27 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGW 27 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 57999996 7999999999999997
No 336
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=76.35 E-value=2.7 Score=40.56 Aligned_cols=30 Identities=27% Similarity=0.555 Sum_probs=26.7
Q ss_pred EEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 215 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 215 VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
++|+|+|.+|..+++....+|+ +++++|++
T Consensus 1 L~I~GaG~va~al~~la~~lg~------~v~v~d~r 30 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGF------RVTVVDPR 30 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTE------EEEEEES-
T ss_pred CEEEeCcHHHHHHHHHHHhCCC------EEEEEcCC
Confidence 5799999999999999999999 99999988
No 337
>PLN02494 adenosylhomocysteinase
Probab=76.26 E-value=2.6 Score=48.87 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=31.2
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+.+++|+|+|+|.||..+++.+...|. +++++|.|
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga------~VIV~e~d 286 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA------RVIVTEID 286 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 678999999999999999999998887 68888754
No 338
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=76.01 E-value=2.6 Score=45.54 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=27.3
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+|.|||+|.+|..+++.|...|. +++++|.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~------~V~~~d~ 31 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH------TVYGVSR 31 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC------EEEEEEC
Confidence 69999999999999999999986 7888875
No 339
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=75.97 E-value=5.4 Score=41.90 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=30.2
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+|.+++|+|.|+ |+||..+++.|+..|. ++++++.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~------~v~~~~~~ 48 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGA------DIIITTHG 48 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 467789999996 8999999999999997 67777643
No 340
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=75.94 E-value=2.8 Score=43.62 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=29.0
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEec
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
|++++|+|.|+ |+||..+++.|+..|. ++++++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~------~vi~~~ 36 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA------DIVGAG 36 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEc
Confidence 56789999997 8999999999999997 777776
No 341
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=75.93 E-value=2.6 Score=48.95 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=31.8
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
.|.+++|+|+|+|.+|..+++.|...|. +++++|.|
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga------~ViV~e~d 286 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA------RVVVTEID 286 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 4789999999999999999999998887 68887654
No 342
>PRK06128 oxidoreductase; Provisional
Probab=75.91 E-value=5.5 Score=43.16 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=29.5
Q ss_pred HHHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEec
Q 003714 208 KKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 208 ~~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
.+|++++++|.|+ ||||.++++.|+..|. ++++++
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~------~V~i~~ 86 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFAREGA------DIALNY 86 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHcCC------EEEEEe
Confidence 3578889999996 9999999999999997 666654
No 343
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=75.78 E-value=4.4 Score=42.73 Aligned_cols=35 Identities=20% Similarity=0.461 Sum_probs=29.7
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+++++++|.|+ ||||.++++.|+..|. +++++|.+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~------~V~~~~r~ 38 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGA------RVAVLDKS 38 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56788999996 7999999999999997 78887643
No 344
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=75.70 E-value=11 Score=42.26 Aligned_cols=37 Identities=11% Similarity=-0.073 Sum_probs=28.1
Q ss_pred hccCccEEEEccCCHHHHHHHhhhcccccccEEEeccc
Q 003714 308 FWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTL 345 (800)
Q Consensus 308 f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt~ 345 (800)
.+.+.|+|++|+....++... ..|.++|+++|.+|..
T Consensus 75 l~~~vDVVIdaT~~~~~~e~a-~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 75 LLEKADIVVDATPGGVGAKNK-ELYEKAGVKAIFQGGE 111 (341)
T ss_pred hhccCCEEEECCCchhhHHHH-HHHHHCCCEEEEcCCC
Confidence 446899999999877666555 4677788999987763
No 345
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=75.64 E-value=11 Score=41.76 Aligned_cols=34 Identities=26% Similarity=0.650 Sum_probs=29.0
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
...+|+|.|+|++|...+..+..+|. .+++++|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~-----~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGA-----AEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-----cEEEEEeC
Confidence 46789999999999999998888898 67877763
No 346
>PLN02852 ferredoxin-NADP+ reductase
Probab=75.59 E-value=7.8 Score=45.50 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=33.8
Q ss_pred cCcEEEEcCCchHHHHHHHHHH--hccccCCCcceEEecCCcccccCCCcc
Q 003714 212 DAKVFIVGSGALGCEFLKNVAL--MGVSCGNQGKLTITDDDVIEKSNLSRQ 260 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~--~Gv~~~~~g~i~ivD~D~Ie~sNLnRQ 260 (800)
..+|+|||+|.-|.+.+..|++ .|. +++|+|... .+-.|.|.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~------~Vtv~E~~p-~pgGlvr~ 69 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGA------RVDIIERLP-TPFGLVRS 69 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCC------eEEEEecCC-CCcceEee
Confidence 5689999999999999999997 565 999999765 34455553
No 347
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.57 E-value=5.4 Score=41.44 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=23.0
Q ss_pred hcCcEEEEcC-CchHHHHHHHHHHhcc
Q 003714 211 EDAKVFIVGS-GALGCEFLKNVALMGV 236 (800)
Q Consensus 211 ~~~~VlvvG~-GgiG~evlknLa~~Gv 236 (800)
.+++++|.|+ |+||.++++.|+..|.
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~ 29 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGY 29 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 4568999996 8999999999999986
No 348
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=75.57 E-value=2.6 Score=51.31 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=30.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
..|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGW------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC------eEEEEecCC
Confidence 589999999999999999999997 899999874
No 349
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.54 E-value=7.1 Score=41.24 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=30.6
Q ss_pred HHhcCcEEEEcC---CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 209 KLEDAKVFIVGS---GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 209 ~L~~~~VlvvG~---GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
++.+++++|.|+ +|||.++++.|+..|. +++++|.+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~------~v~l~~r~ 42 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGA------EVVLTGFG 42 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCC------EEEEecCc
Confidence 366789999996 7999999999999997 78888753
No 350
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=75.52 E-value=7.5 Score=47.30 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=30.8
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
...+|+|||+|..|-..+..|++.|. +++|+|.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~------~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV------AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC------eEEEEecC
Confidence 46799999999999999999999997 79999864
No 351
>PLN02688 pyrroline-5-carboxylate reductase
Probab=75.50 E-value=12 Score=39.77 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGV 236 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv 236 (800)
.+|.+||+|.+|+.++++|...|.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~ 24 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGV 24 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC
Confidence 369999999999999999999884
No 352
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=75.48 E-value=2.2 Score=48.37 Aligned_cols=102 Identities=20% Similarity=0.245 Sum_probs=64.8
Q ss_pred HHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccC-c--ccccHHHHHHHHHHhhC
Q 003714 208 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDW-N--IGQAKSTVAASAATSIN 284 (800)
Q Consensus 208 ~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~-d--IG~~Ka~vaa~~l~~~n 284 (800)
++|+..||++.|+|+-|+.+++.|..+|+ ...+|.++|.-- .++... | .++.|.+.+.+......
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~---~~~~i~~~D~~G---------~l~~~r~~~~~~~~k~~~a~~~~~~~~ 262 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGV---KEENIFVVDRKG---------LLYDGREDLTMNQKKYAKAIEDTGERT 262 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCC---CcccEEEEecCC---------cccCCCcccccchHHHHHHHhhhcccc
Confidence 47889999999999999999999999999 225999999532 233222 2 46677666654322222
Q ss_pred CCceEEEEecccCCCcccccchhhccCccEEEEccCC-HHHHHHHhhhcccccccEEEecc
Q 003714 285 PRLNIEALQNRVGPETENVFDDTFWENITCVINALDN-VNARLYVDQRCLYFQKPLLESGT 344 (800)
Q Consensus 285 p~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn-~~ar~~l~~~c~~~~~pli~sgt 344 (800)
. . .-..+.|+.|.+... .=...++..++.. |+|-.-+
T Consensus 263 ~-------~-------------~~~~~adv~iG~S~~G~~t~e~V~~Ma~~---PiIfala 300 (432)
T COG0281 263 L-------D-------------LALAGADVLIGVSGVGAFTEEMVKEMAKH---PIIFALA 300 (432)
T ss_pred c-------c-------------ccccCCCEEEEcCCCCCcCHHHHHHhccC---CEEeecC
Confidence 0 0 023577877777653 2233466666543 7775443
No 353
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=75.44 E-value=7.1 Score=43.44 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=52.9
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEE
Q 003714 213 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 291 (800)
Q Consensus 213 ~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~ 291 (800)
.||+|+|+ |.+|.++++.|+..|. +..++..+ .+..+.|+.=. ++ ...+..
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~h---p~~~l~~l---------------~s~~~~g~~l~---------~~-g~~i~v 53 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNF---PVDKLRLL---------------ASARSAGKELS---------FK-GKELKV 53 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC---CcceEEEE---------------EccccCCCeee---------eC-CceeEE
Confidence 58999996 8999999999998765 11233332 22223343210 11 111111
Q ss_pred EecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEE
Q 003714 292 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLE 341 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~ 341 (800)
. .+. ..-|.+.|+||.|+....++.+..+.. ..+..+|+
T Consensus 54 ~--d~~--------~~~~~~vDvVf~A~g~g~s~~~~~~~~-~~G~~VID 92 (334)
T PRK14874 54 E--DLT--------TFDFSGVDIALFSAGGSVSKKYAPKAA-AAGAVVID 92 (334)
T ss_pred e--eCC--------HHHHcCCCEEEECCChHHHHHHHHHHH-hCCCEEEE
Confidence 1 111 112478999999999998888777653 34555665
No 354
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=75.40 E-value=8.9 Score=42.93 Aligned_cols=108 Identities=16% Similarity=0.235 Sum_probs=62.7
Q ss_pred cCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEE
Q 003714 212 DAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 290 (800)
Q Consensus 212 ~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~ 290 (800)
..||+|||+ |.+|.|+++.|+..|. +...+..+ ......|+.=.. .+.++.+.
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~h---P~~~l~~l---------------as~rsaGk~~~~--------~~~~~~v~ 60 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDF---PYSSLKML---------------ASARSAGKKVTF--------EGRDYTVE 60 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCC---CcceEEEE---------------EccCCCCCeeee--------cCceeEEE
Confidence 368999996 8899999999998665 22444443 222234442111 01111111
Q ss_pred EEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEec-ccCcccceEEEeCCc
Q 003714 291 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG-TLGAKCNTQMVIPHL 358 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sg-t~G~~G~v~~~ip~~ 358 (800)
.. +.+-+.++|+|+.|+.+-.++.++.+. .+.+..+|+.+ ..-+.-.+..++|.+
T Consensus 61 ~~------------~~~~~~~~D~vf~a~p~~~s~~~~~~~-~~~g~~VIDlS~~fR~~~~~p~~vPEv 116 (344)
T PLN02383 61 EL------------TEDSFDGVDIALFSAGGSISKKFGPIA-VDKGAVVVDNSSAFRMEEGVPLVIPEV 116 (344)
T ss_pred eC------------CHHHHcCCCEEEECCCcHHHHHHHHHH-HhCCCEEEECCchhhcCCCCceECCCc
Confidence 11 112237899999999998888887765 34677888644 333332344555544
No 355
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=75.36 E-value=5.2 Score=42.81 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=27.4
Q ss_pred EEEEcC-CchHHHHHHHHHHhc--cccCCCcceEEecCC
Q 003714 215 VFIVGS-GALGCEFLKNVALMG--VSCGNQGKLTITDDD 250 (800)
Q Consensus 215 VlvvG~-GgiG~evlknLa~~G--v~~~~~g~i~ivD~D 250 (800)
|.|||+ |.+|..++..|++.| .. .+|+++|.+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~----~el~L~D~~ 35 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLA----IELVLYDID 35 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcc----eEEEEEeCC
Confidence 579999 999999999999999 42 689999843
No 356
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=75.21 E-value=4.9 Score=42.74 Aligned_cols=34 Identities=35% Similarity=0.539 Sum_probs=29.3
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+++++++|.|+ |+||.++++.|+..|. +++++|.
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~------~V~~~~r 42 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGA------KVAILDR 42 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEeC
Confidence 56788999996 8999999999999997 6887764
No 357
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=75.18 E-value=6.1 Score=47.17 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=30.5
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
.+.+|+|||+|.+|-..+..|++.|. +++++|..
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~------~V~v~e~~ 169 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGH------AVTIFEAG 169 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC------eEEEEecC
Confidence 46789999999999999999999997 69999854
No 358
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=75.10 E-value=3.5 Score=46.75 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=34.4
Q ss_pred cCcEEEEcCCchHHHHHHHHHHh-ccccCCCcceEEecCCcccccCCCc
Q 003714 212 DAKVFIVGSGALGCEFLKNVALM-GVSCGNQGKLTITDDDVIEKSNLSR 259 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~-Gv~~~~~g~i~ivD~D~Ie~sNLnR 259 (800)
...|+|||+|-+|+.+|..|++. |. .+++|+|.+.+-...-.|
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~-----~~V~vle~~~~~~gas~~ 73 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGI-----TNVAVLEKGWLGGGNTGR 73 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCC-----CeEEEEEcccccCccccc
Confidence 34699999999999999999985 86 589999998765443333
No 359
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=74.96 E-value=3.1 Score=43.64 Aligned_cols=34 Identities=18% Similarity=0.442 Sum_probs=29.6
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+++++|+|.|+ |+||.++++.|+..|. +++++|.
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~------~V~~~~r 42 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA------EVILNGR 42 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC------EEEEEeC
Confidence 66789999996 9999999999999997 7887764
No 360
>PRK08628 short chain dehydrogenase; Provisional
Probab=74.93 E-value=6.4 Score=41.20 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=29.3
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
|++++++|.|+ |+||.++++.|+..|. ++++++.+
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~------~v~~~~r~ 40 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGA------IPVIFGRS 40 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCC------cEEEEcCC
Confidence 66789999995 8999999999999997 67776543
No 361
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=74.91 E-value=5.5 Score=44.89 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=43.3
Q ss_pred EEEEcCCchHHHHHHHH--HHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEE
Q 003714 215 VFIVGSGALGCEFLKNV--ALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 291 (800)
Q Consensus 215 VlvvG~GgiG~evlknL--a~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~ 291 (800)
|+|||+|..|..+|..| +..|. ++.|+|...--.-.-+|-..|-..+++. ....+...-+...|..
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~------~Vllid~~~~~~~~~~~tW~~~~~~~~~-----~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGL------SVLLIDPKPKPPWPNDRTWCFWEKDLGP-----LDSLVSHRWSGWRVYF 69 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCC------EEEEEcCCccccccCCcccccccccccc-----hHHHHheecCceEEEe
Confidence 78999999999999999 66665 9999998654422334455555556665 3333443344444444
No 362
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=74.87 E-value=2.8 Score=47.20 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=30.8
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
...|+|||+|..|+.+|-.|++.|+ +++|+|...
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGL------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCC------EEEEEeCCC
Confidence 3579999999999999999999998 799999864
No 363
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=74.81 E-value=7.6 Score=40.39 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=31.1
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
+.+++++|.|+ |+||..+++.|+..|. +++++|.+.
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~------~v~~~~~~~ 42 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGA------KVIGFDQAF 42 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEecch
Confidence 56788999996 7899999999999997 788888765
No 364
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=74.73 E-value=3 Score=49.61 Aligned_cols=35 Identities=29% Similarity=0.560 Sum_probs=31.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCccc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE 253 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie 253 (800)
..|+|||+|.+|+.+|..|++.|. +++|+|...+.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~------~V~LlEk~d~~ 41 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGL------RCILVERHDIA 41 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCC------eEEEEECCCCC
Confidence 569999999999999999999998 89999986554
No 365
>PRK08818 prephenate dehydrogenase; Provisional
Probab=74.72 E-value=8.4 Score=43.57 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=28.3
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHh-ccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALM-GVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~-Gv~~~~~g~i~ivD~ 249 (800)
+.+.+|+|||. |.+|..+++.|-.. |+ +|+.+|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~------~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQL------EVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCC------EEEEEcC
Confidence 35678999999 99999999999864 44 7888875
No 366
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.72 E-value=3.1 Score=46.09 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=29.5
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhccccC-CCcceEEecCC
Q 003714 213 AKVFIVGS-GALGCEFLKNVALMGVSCG-NQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~-GgiG~evlknLa~~Gv~~~-~~g~i~ivD~D 250 (800)
.||+|+|+ |.+|+.++..|+..|+... ..-.|+|+|.+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 47999999 9999999999999998410 11149999853
No 367
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=74.60 E-value=3 Score=43.80 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=30.1
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
++++++++|.|+ |+||.++++.|+..|. +++++|.
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~------~v~~~~r 40 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGA------RVVLVDR 40 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEeC
Confidence 467788999996 8999999999999997 7888764
No 368
>PRK08589 short chain dehydrogenase; Validated
Probab=74.60 E-value=5.2 Score=42.58 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=29.3
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+.+++++|.|+ ||||.++++.|+..|. +++++|.
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~------~vi~~~r 38 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA------YVLAVDI 38 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeC
Confidence 56788999996 8999999999999997 7877753
No 369
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.56 E-value=7.5 Score=42.57 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=30.7
Q ss_pred HHhcCcEEEEc-CCchHHHHHHHHHHhccccCCCcceEEec
Q 003714 209 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
.+++++|+||| .|.+|..++.+|...|. .+++.+
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~------tVtv~~ 189 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA------TVTIAH 189 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCC------EEEEEC
Confidence 47899999999 89999999999999997 788874
No 370
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=74.54 E-value=5.6 Score=44.60 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=39.4
Q ss_pred HHHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc--ccccCCCcccccc
Q 003714 207 QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV--IEKSNLSRQFLFR 264 (800)
Q Consensus 207 q~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~--Ie~sNLnRQflf~ 264 (800)
++--.+.+|.|||+||-||.++..|.+.|+. .-.+..+|.|. ++.+...+-+++.
T Consensus 12 ~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~---~~~~iainTD~~~L~~~~a~~ki~iG 68 (349)
T TIGR00065 12 IQPSNKAKIKVIGVGGGGNNTVNRMLEEGVE---GVEFIAINTDAQHLKTTKADKKILIG 68 (349)
T ss_pred cCcccCCeEEEEEeCCcHHHHHHHHHHcCCC---ceEEEEEECCHHHHhcCCCCeEEEcC
Confidence 3333456899999999999999999999872 24667788886 4444444445553
No 371
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=74.43 E-value=2.9 Score=49.56 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=29.4
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEec
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
+++++++|+|+||+|..++..|+..|+ +|++++
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~------~V~i~n 409 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA------RVVIAN 409 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC------EEEEEc
Confidence 456789999999999999999999997 788875
No 372
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=74.40 E-value=10 Score=42.38 Aligned_cols=94 Identities=14% Similarity=0.210 Sum_probs=57.8
Q ss_pred hcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceE
Q 003714 211 EDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 289 (800)
Q Consensus 211 ~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i 289 (800)
+..+|.|||+ |.+|.|+++.|+.... |..+|..+- .+...|+.=. +. .-++.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~h---P~~~l~~la---------------S~~saG~~~~------~~--~~~~~v 56 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQF---PVGELYALA---------------SEESAGETLR------FG--GKSVTV 56 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCC---CceEEEEEE---------------ccCcCCceEE------EC--CcceEE
Confidence 3568999998 9999999999998432 226766653 2223444211 00 112233
Q ss_pred EEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEec
Q 003714 290 EALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 343 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sg 343 (800)
+. +. ..-|+++|+|+.|+.+-.++.+.... ...|..+|+.+
T Consensus 57 ~~----~~--------~~~~~~~Dvvf~a~p~~~s~~~~~~~-~~~g~~VIDlS 97 (336)
T PRK08040 57 QD----AA--------EFDWSQAQLAFFVAGREASAAYAEEA-TNAGCLVIDSS 97 (336)
T ss_pred Ee----Cc--------hhhccCCCEEEECCCHHHHHHHHHHH-HHCCCEEEECC
Confidence 21 11 11246899999999888887777766 44678788643
No 373
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=74.33 E-value=3 Score=45.59 Aligned_cols=33 Identities=21% Similarity=0.568 Sum_probs=27.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.+|.|||+|.+|..+++.|...|.. .+++++|.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~----~~V~~~dr 39 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLA----GEIVGADR 39 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCC----cEEEEEEC
Confidence 5799999999999999999999861 36777764
No 374
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=74.29 E-value=2.8 Score=47.46 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=30.4
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
..|+|||+|..|+.+|-.|++.|+ +++|+|...
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~------~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGL------EVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCC------EEEEEcCCC
Confidence 479999999999999999999998 899999765
No 375
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=74.23 E-value=9.3 Score=40.24 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=30.9
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
.|.+++++|.|+ ||||.++++.|+..|. +++++|.+.
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~------~v~~~~~~~ 43 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGA------NVVNADIHG 43 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeCCc
Confidence 367788999995 8999999999999997 788877543
No 376
>PRK08265 short chain dehydrogenase; Provisional
Probab=74.10 E-value=4.3 Score=42.90 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=30.5
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+++++++|.|+ ||||.++++.|+..|. +++++|.+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~------~V~~~~r~ 39 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGA------RVAIVDID 39 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56789999996 9999999999999997 78888754
No 377
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=73.96 E-value=8.6 Score=41.72 Aligned_cols=96 Identities=20% Similarity=0.311 Sum_probs=60.3
Q ss_pred cEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceEEEE
Q 003714 214 KVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 292 (800)
Q Consensus 214 ~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i~~~ 292 (800)
+|+|+|+ |-+|.++.+.|. |- +.++-+|...++..| .+.+++.+++..|++-|.+-
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~-----~~v~a~~~~~~Ditd----------------~~~v~~~i~~~~PDvVIn~A 58 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GE-----FEVIATDRAELDITD----------------PDAVLEVIRETRPDVVINAA 58 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CC-----ceEEeccCccccccC----------------hHHHHHHHHhhCCCEEEECc
Confidence 5999996 789999999987 32 466666655543333 34578888899999877753
Q ss_pred ec-ccC-CCcccccchhhccCccEEEEccCCHHHHHHHhhhcccccccEEEecc
Q 003714 293 QN-RVG-PETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGT 344 (800)
Q Consensus 293 ~~-~v~-~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sgt 344 (800)
.- .+. .+.+. ....-| |..+-..+.+.|...|.++|.-.|
T Consensus 59 Ayt~vD~aE~~~--------e~A~~v----Na~~~~~lA~aa~~~ga~lVhiST 100 (281)
T COG1091 59 AYTAVDKAESEP--------ELAFAV----NATGAENLARAAAEVGARLVHIST 100 (281)
T ss_pred cccccccccCCH--------HHHHHh----HHHHHHHHHHHHHHhCCeEEEeec
Confidence 21 111 11110 000111 333446788999999999997554
No 378
>PRK06179 short chain dehydrogenase; Provisional
Probab=73.95 E-value=8.9 Score=40.48 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=28.8
Q ss_pred cCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 212 DAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
+.+|+|.|+ |+||.++++.|+..|. ++++++.+.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~------~V~~~~r~~ 38 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY------RVFGTSRNP 38 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC------EEEEEeCCh
Confidence 457999995 8999999999999997 688888664
No 379
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=73.92 E-value=2.9 Score=45.70 Aligned_cols=31 Identities=26% Similarity=0.492 Sum_probs=28.3
Q ss_pred EEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 215 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 215 VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
|.|||+|.+|+.++-.|++.|+ ++++++|.|
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l-----~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKEL-----GDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCC-----cEEEEEeCC
Confidence 5799999999999999999998 589999976
No 380
>PRK09126 hypothetical protein; Provisional
Probab=73.88 E-value=3 Score=46.90 Aligned_cols=35 Identities=26% Similarity=0.578 Sum_probs=31.0
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcc
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 252 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~I 252 (800)
+..|+|||+|..|+.+|..|++.|+ +++|+|....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~------~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGL------KVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC------cEEEEeCCCc
Confidence 4679999999999999999999999 8999887653
No 381
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=73.86 E-value=2.3 Score=47.84 Aligned_cols=40 Identities=30% Similarity=0.497 Sum_probs=34.2
Q ss_pred ccccchhHHHhhhhhhhhhhhcccCccccccce-eeecccC
Q 003714 137 RAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQF-FYFDSVE 176 (800)
Q Consensus 137 ~~el~PvaA~iGGi~aQEviK~it~k~~Pi~q~-~~fd~~~ 176 (800)
.+-+.|+.+++|++.|.|+||.++|...|+.+- +.||...
T Consensus 188 ~gv~g~~~~~~g~~~a~e~ik~l~g~~~~l~~~l~~~d~~~ 228 (355)
T PRK05597 188 AGVLGPVVGVVGSAMAMEALKLITGVGTPLIGKLGYYDSLD 228 (355)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCC
Confidence 457999999999999999999999998888754 4688654
No 382
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=73.83 E-value=3.3 Score=46.43 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=30.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 252 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~I 252 (800)
..|+|||+|..|+.+|..|++.|+ +++|+|.+.-
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~------~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGL------RVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCC------eEEEEecCCC
Confidence 479999999999999999999998 8999997654
No 383
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=73.74 E-value=3.4 Score=45.42 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=29.5
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.||.|||+|-+|+.++-.|+..|. +.++++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~-----~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKEL-----ADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeC
Confidence 489999999999999999999998 68999985
No 384
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=73.65 E-value=11 Score=42.65 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=54.0
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhccccCCCc-ceEEecCCcccccCCCcccccccCcc-cccHHHHHHHHHHh--hC--
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQG-KLTITDDDVIEKSNLSRQFLFRDWNI-GQAKSTVAASAATS--IN-- 284 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g-~i~ivD~D~Ie~sNLnRQflf~~~dI-G~~Ka~vaa~~l~~--~n-- 284 (800)
...+|.|+|+|+.|+.++..|+..|..+...| .+++...| +++ |+. .++.+.+ .|
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~---------------~~~~~~~----~~~~in~~~~N~~ 70 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLE---------------EIVEGEK----LSDIINTKHENVK 70 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEec---------------ccccchH----HHHHHHhcCCCcc
Confidence 34689999999999999999999873111012 44443222 121 221 2222221 22
Q ss_pred --CCceEEEEecccCCCcccccchhhccCccEEEEccCCHHHHHHHhhhc
Q 003714 285 --PRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRC 332 (800)
Q Consensus 285 --p~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c 332 (800)
|+++ +...+...+ ++ .+..++.|+|+.|+-+...|..+.+..
T Consensus 71 ylp~~~---Lp~ni~~ts-dl--~eav~~aDiIvlAVPsq~l~~vl~~l~ 114 (365)
T PTZ00345 71 YLPGIK---LPDNIVAVS-DL--KEAVEDADLLIFVIPHQFLESVLSQIK 114 (365)
T ss_pred cCCCCc---CCCceEEec-CH--HHHHhcCCEEEEEcChHHHHHHHHHhc
Confidence 2222 111221101 11 134678999999999888888777764
No 385
>PRK06914 short chain dehydrogenase; Provisional
Probab=73.65 E-value=9.2 Score=40.61 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=27.8
Q ss_pred hcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 211 EDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 211 ~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+++.++|.|+ |++|..+++.|+..|. ++++++.+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~------~V~~~~r~ 36 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY------LVIATMRN 36 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC------EEEEEeCC
Confidence 3456899985 8999999999999997 77777654
No 386
>PRK13018 cell division protein FtsZ; Provisional
Probab=73.57 E-value=8.7 Score=43.53 Aligned_cols=51 Identities=16% Similarity=0.399 Sum_probs=38.4
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc--ccccCCCccccc
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV--IEKSNLSRQFLF 263 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~--Ie~sNLnRQflf 263 (800)
..+.+|.|||+||-||.++.+|...|+ ..-.+..++.|. ++.+.-.+-.++
T Consensus 26 ~~~~~I~ViGvGGaG~N~v~~m~~~~~---~~v~~iaiNTD~q~L~~~~a~~ki~i 78 (378)
T PRK13018 26 FGNPKIVVVGCGGAGNNTINRLYEIGI---EGAETIAINTDAQHLAMIKADKKILI 78 (378)
T ss_pred cCCCeEEEEEeCCcHHHHHHHHHHcCC---CCceEEEEECCHHHHhcCCCCcEEec
Confidence 456799999999999999999999987 124778888887 444444444444
No 387
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=73.29 E-value=3.9 Score=48.17 Aligned_cols=41 Identities=17% Similarity=0.377 Sum_probs=34.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSR 259 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnR 259 (800)
..|+|||.|.+|+.+|..|++.|+ +++|+|...+....-.|
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl------~V~LvEk~d~~~GtS~~ 47 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGL------SVLLCEQDDLASATSSA 47 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC------eEEEEecCCCCCCcccc
Confidence 469999999999999999999998 89999987664433333
No 388
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=73.16 E-value=3.5 Score=46.76 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=49.8
Q ss_pred cCcEEEEcC-CchHHHHHHHHHHhccccCCCc--ceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhC-CCc
Q 003714 212 DAKVFIVGS-GALGCEFLKNVALMGVSCGNQG--KLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSIN-PRL 287 (800)
Q Consensus 212 ~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g--~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~n-p~v 287 (800)
-.||.|||+ |.+|+.++-.|+..|+. +++- .|+|+|. |+.+.|++.-+--|...- |..
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~-~~~~ei~L~L~di-----------------D~~~~~a~g~a~DL~d~a~~~~ 105 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVF-GQDQPIALKLLGS-----------------ERSKEALEGVAMELEDSLYPLL 105 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccc-CCCCceEEEEecc-----------------CccchhhhHHHHHHHHhhhhhc
Confidence 469999999 99999999999999994 1111 4556653 445556666555555443 322
Q ss_pred -eEEEEecccCCCcccccchhhccCccEEEEcc
Q 003714 288 -NIEALQNRVGPETENVFDDTFWENITCVINAL 319 (800)
Q Consensus 288 -~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~ 319 (800)
++.... .+ .+-+++.|+||.+.
T Consensus 106 ~~v~i~~-----~~-----y~~~kdaDIVVitA 128 (387)
T TIGR01757 106 REVSIGI-----DP-----YEVFEDADWALLIG 128 (387)
T ss_pred CceEEec-----CC-----HHHhCCCCEEEECC
Confidence 121111 11 12357899988874
No 389
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.16 E-value=6.7 Score=40.74 Aligned_cols=33 Identities=21% Similarity=0.466 Sum_probs=26.9
Q ss_pred HhcCcEEEEc-CCchHHHHHHHHHHhccccCCCcceEEec
Q 003714 210 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
|++++++|.| .|+||.++++.|+..|. ++.+++
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~------~vv~~~ 36 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGA------RVVVNY 36 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC------eEEEEc
Confidence 4567899999 58999999999999996 565544
No 390
>PRK12828 short chain dehydrogenase; Provisional
Probab=73.14 E-value=3.4 Score=42.41 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=30.2
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+++++++|.|+ |+||..+++.|+..|. +++++|.+
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~------~v~~~~r~ 40 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGA------RVALIGRG 40 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCC------eEEEEeCC
Confidence 56789999996 9999999999999997 68888754
No 391
>PRK12829 short chain dehydrogenase; Provisional
Probab=73.13 E-value=4.1 Score=42.65 Aligned_cols=36 Identities=22% Similarity=0.459 Sum_probs=31.2
Q ss_pred HHHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 208 KKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 208 ~~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
..+++++++|.|+ |++|..+++.|+..|. ++++++.
T Consensus 7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~------~V~~~~r 43 (264)
T PRK12829 7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGA------RVHVCDV 43 (264)
T ss_pred hccCCCEEEEeCCCCcHHHHHHHHHHHCCC------EEEEEeC
Confidence 4578899999996 9999999999999997 6888773
No 392
>PRK06194 hypothetical protein; Provisional
Probab=73.12 E-value=3.4 Score=44.13 Aligned_cols=35 Identities=26% Similarity=0.456 Sum_probs=29.3
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+++++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~------~V~~~~r~ 39 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM------KLVLADVQ 39 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 45678999995 8999999999999997 78888753
No 393
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=73.11 E-value=3.4 Score=45.85 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=28.9
Q ss_pred cEEEEcC-CchHHHHHHHHHHhccccC-CCcceEEecC
Q 003714 214 KVFIVGS-GALGCEFLKNVALMGVSCG-NQGKLTITDD 249 (800)
Q Consensus 214 ~VlvvG~-GgiG~evlknLa~~Gv~~~-~~g~i~ivD~ 249 (800)
||.|+|+ |.+|+.++-.|+..|++.. .+..|+|+|-
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~ 38 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDI 38 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEec
Confidence 6899999 9999999999999998420 2226899874
No 394
>PRK08605 D-lactate dehydrogenase; Validated
Probab=73.09 E-value=3.2 Score=46.19 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=28.6
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHH-hccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVAL-MGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~-~Gv~~~~~g~i~ivD~ 249 (800)
.|.+++|.|||+|.+|..+++.|+. .|+ ++...|.
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~------~V~~~d~ 178 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGS------DVVAYDP 178 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHhcCCC------EEEEECC
Confidence 5889999999999999999999953 444 6666664
No 395
>CHL00194 ycf39 Ycf39; Provisional
Probab=73.06 E-value=15 Score=40.15 Aligned_cols=30 Identities=17% Similarity=0.414 Sum_probs=25.8
Q ss_pred cEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 214 KVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 214 ~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+|+|.|+ |-+|..+++.|...|. +++.++.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~------~V~~l~R 32 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY------QVRCLVR 32 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC------eEEEEEc
Confidence 7999996 9999999999999986 6777653
No 396
>PRK06753 hypothetical protein; Provisional
Probab=72.92 E-value=3.6 Score=45.88 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=29.4
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
.+|+|||+|..|+.+|..|++.|+ +++|++.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~------~v~v~E~~~ 33 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGH------EVKVFEKNE 33 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------cEEEEecCC
Confidence 379999999999999999999998 788888654
No 397
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=72.80 E-value=3.9 Score=42.99 Aligned_cols=37 Identities=30% Similarity=0.437 Sum_probs=31.7
Q ss_pred HHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceE-EecCC
Q 003714 208 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLT-ITDDD 250 (800)
Q Consensus 208 ~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~-ivD~D 250 (800)
..|+.++|+|.|.|.+|..+++.|...|. +++ |.|.+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~------~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGA------KVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEECCC
Confidence 35788999999999999999999999998 554 77753
No 398
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=72.65 E-value=13 Score=41.16 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=22.3
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGV 236 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv 236 (800)
.+|.|+|+|+.|+.+++.|+..|-
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~ 25 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGH 25 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCC
Confidence 589999999999999999999983
No 399
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=72.64 E-value=1.7 Score=51.05 Aligned_cols=90 Identities=19% Similarity=0.334 Sum_probs=60.6
Q ss_pred hhhhhhcccCccccccceeeecccCCCCCCCCCccCCCCccCcchhhhhccCHHHH------------------HHHhcC
Q 003714 152 GQEVVKACSGKFHPLYQFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQ------------------KKLEDA 213 (800)
Q Consensus 152 aQEviK~it~k~~Pi~q~~~fd~~~~l~~~~l~~~~~~~~~~RYdrqi~l~G~~~q------------------~~L~~~ 213 (800)
-+|.++++..+| |- -.+.|+.+.. ......-+||...+.+|..+-| .+|++.
T Consensus 229 ~defv~av~~~~-P~-~~Iq~EDf~~--------~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~ 298 (559)
T PTZ00317 229 LDEFMEAVSSRW-PN-AVVQFEDFSN--------NHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQ 298 (559)
T ss_pred HHHHHHHHHHhC-CC-eEEehhhcCC--------ccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhc
Confidence 588999999999 65 3445554322 1111223566666666654433 468899
Q ss_pred cEEEEcCCchHHHHHHHHHH----hccccCC-CcceEEecCCc
Q 003714 214 KVFIVGSGALGCEFLKNVAL----MGVSCGN-QGKLTITDDDV 251 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~----~Gv~~~~-~g~i~ivD~D~ 251 (800)
+|+++|+|+-|.-+++.|+. .|+.-.+ ..+|.++|.+-
T Consensus 299 riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~G 341 (559)
T PTZ00317 299 RIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKG 341 (559)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence 99999999999999998874 6872211 25899999763
No 400
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=72.59 E-value=3.8 Score=46.33 Aligned_cols=33 Identities=15% Similarity=0.385 Sum_probs=29.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHh--ccccCCCcceEEecCCc
Q 003714 213 AKVFIVGSGALGCEFLKNVALM--GVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~--Gv~~~~~g~i~ivD~D~ 251 (800)
..|+|||+|.+|+.+|..|++. |. +++|+|...
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~------~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGA------RIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCC------eEEEEeCCC
Confidence 5799999999999999999998 76 899999763
No 401
>PRK12937 short chain dehydrogenase; Provisional
Probab=72.42 E-value=8.4 Score=39.80 Aligned_cols=33 Identities=15% Similarity=0.384 Sum_probs=27.4
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEec
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
+.+++++|.|+ |+||..+++.|+..|. +++++.
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~------~v~~~~ 36 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGF------AVAVNY 36 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEec
Confidence 45678999995 9999999999999997 565554
No 402
>PRK07236 hypothetical protein; Provisional
Probab=72.37 E-value=3.4 Score=46.49 Aligned_cols=34 Identities=9% Similarity=0.125 Sum_probs=30.5
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
...+|+|||+|-.|..++..|++.|+ +++|+|..
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~------~v~v~E~~ 38 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGW------DVDVFERS 38 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCC------CEEEEecC
Confidence 35789999999999999999999998 78888865
No 403
>PTZ00188 adrenodoxin reductase; Provisional
Probab=72.33 E-value=13 Score=43.71 Aligned_cols=97 Identities=18% Similarity=0.116 Sum_probs=54.4
Q ss_pred hcCcEEEEcCCchHHHHHHHHH-HhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHh--hCCCc
Q 003714 211 EDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATS--INPRL 287 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa-~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~--~np~v 287 (800)
...+|+|||+|.-|++.|..|+ ..|. +++|+|....-- =|-|.- ....+ ++.....+.+.+ .++.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~------~VtlfEk~p~pg-GLvR~G-VaPdh---~~~k~v~~~f~~~~~~~~v 106 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV------KVDIFEKLPNPY-GLIRYG-VAPDH---IHVKNTYKTFDPVFLSPNY 106 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC------eEEEEecCCCCc-cEEEEe-CCCCC---ccHHHHHHHHHHHHhhCCe
Confidence 4568999999999999999765 5676 788888654332 333322 22223 122222222222 23555
Q ss_pred eEEEEecccCCCcccccchhhccCccEEEEccCCH
Q 003714 288 NIEALQNRVGPETENVFDDTFWENITCVINALDNV 322 (800)
Q Consensus 288 ~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~ 322 (800)
+.. ....++.+ +--++....||.||-|+...
T Consensus 107 ~f~-gnv~VG~D---vt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 107 RFF-GNVHVGVD---LKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred EEE-eeeEecCc---cCHHHHHhcCCEEEEEcCCC
Confidence 443 22233322 11134456899999998654
No 404
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=72.31 E-value=3.9 Score=43.69 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=29.4
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
+|+|||+|..|.+.|..|++.|. +++|+|...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~------~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANL------KTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC------CEEEEeccC
Confidence 69999999999999999999998 799999754
No 405
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=72.26 E-value=11 Score=40.99 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=26.8
Q ss_pred cCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 212 DAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+++|+|.|+ |+||+.+++.|+..|. ++++++.|
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~------~V~~~~r~ 38 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY------TINATVRD 38 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC------EEEEEEcC
Confidence 468999995 9999999999999986 66665443
No 406
>PRK08013 oxidoreductase; Provisional
Probab=72.25 E-value=3.4 Score=46.85 Aligned_cols=34 Identities=21% Similarity=0.421 Sum_probs=30.8
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
...|+|||+|..|..++-.|++.|+ +++|+|...
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~------~v~viE~~~ 36 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGL------RVAVLEQRV 36 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCC------EEEEEeCCC
Confidence 3579999999999999999999998 899999765
No 407
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=72.24 E-value=3.6 Score=43.21 Aligned_cols=35 Identities=14% Similarity=0.396 Sum_probs=29.9
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
++++++++|.|+ |+||..+++.|+..|. +++++|.
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~------~V~~~~r 44 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGA------RVVLSAR 44 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCC------EEEEEeC
Confidence 467889999995 9999999999999997 6777763
No 408
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=72.22 E-value=7.6 Score=40.77 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=28.9
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+.+++++|.|+ ||||.++++.|+..|. ++++++.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~------~vv~~~~ 40 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGA------DIVGVGV 40 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEecC
Confidence 56788999995 8999999999999997 7777653
No 409
>PRK06847 hypothetical protein; Provisional
Probab=72.14 E-value=3.8 Score=45.66 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=30.1
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
..+|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~------~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGI------AVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCC------CEEEEecCC
Confidence 4579999999999999999999998 789988653
No 410
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=72.12 E-value=8 Score=49.09 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=31.0
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
..++|+|||+|.-|...|..|++.|. +++|+|..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~------~VtVfE~~ 338 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF------PVTVFEAF 338 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC------eEEEEeeC
Confidence 37899999999999999999999997 89999864
No 411
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=72.00 E-value=3.6 Score=49.79 Aligned_cols=41 Identities=24% Similarity=0.444 Sum_probs=34.3
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSR 259 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnR 259 (800)
..|+|||.|.+||.++..|++.|. +++|+|.+.+.-.--.|
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl------~V~LvE~~d~a~GtSsr 112 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGL------RVGLVEREDFSSGTSSR 112 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCC------EEEEEeccccCCCcccc
Confidence 579999999999999999999998 79999988665443333
No 412
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=71.80 E-value=3.7 Score=46.59 Aligned_cols=33 Identities=15% Similarity=0.411 Sum_probs=30.1
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
...|+|||+|..|..++-.|++.|+ +++|+|..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDL------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCC------EEEEEcCC
Confidence 4579999999999999999999998 79999974
No 413
>PRK06198 short chain dehydrogenase; Provisional
Probab=71.74 E-value=8.3 Score=40.37 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=30.6
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+.+++++|.|+ |+||..+++.|+..|. .++.++|.+
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~-----~~V~~~~r~ 40 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGA-----AGLVICGRN 40 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-----CeEEEEcCC
Confidence 56788999996 8999999999999997 348888754
No 414
>PRK05855 short chain dehydrogenase; Validated
Probab=71.72 E-value=6.7 Score=46.19 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=32.2
Q ss_pred HHHHHHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 205 KLQKKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 205 ~~q~~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
..+..+++.+++|+|+ ||||.++++.|+..|. ++++++.
T Consensus 308 ~~~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~------~v~~~~r 347 (582)
T PRK05855 308 RPRGPFSGKLVVVTGAGSGIGRETALAFAREGA------EVVASDI 347 (582)
T ss_pred cccccCCCCEEEEECCcCHHHHHHHHHHHHCCC------EEEEEeC
Confidence 3345677889999996 9999999999999997 6777763
No 415
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=71.70 E-value=2.8 Score=47.51 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=35.5
Q ss_pred CcEEEEcCCchHH-HHHHHHHHhccccCCCcceEEecCCcccccCCCccccc
Q 003714 213 AKVFIVGSGALGC-EFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLF 263 (800)
Q Consensus 213 ~~VlvvG~GgiG~-evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf 263 (800)
.||+++|+|++|+ .+...|..+|. .|+++|.+.=-..-|++|-+|
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~------~V~~vd~~~~~v~aL~~qglY 46 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGF------EVTFVDVNQELIDALNKRKSY 46 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCC------eEEEEECCHHHHHHHhcCCCe
Confidence 3799999999998 66778888886 699999754455667777665
No 416
>PRK08703 short chain dehydrogenase; Provisional
Probab=71.67 E-value=4.2 Score=42.11 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=29.0
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
|++++++|.|+ |++|.++++.|+..|. ++++++.
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~------~V~~~~r 38 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGA------TVILVAR 38 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCC------EEEEEeC
Confidence 56689999996 8999999999999986 7888763
No 417
>PRK08177 short chain dehydrogenase; Provisional
Probab=71.65 E-value=7 Score=40.14 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=28.5
Q ss_pred CcEEEEc-CCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 213 AKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
++|+|.| .|++|..+++.|+..|. +|+++|.+.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~------~V~~~~r~~ 35 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW------QVTATVRGP 35 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC------EEEEEeCCC
Confidence 4689999 59999999999999997 788888654
No 418
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=71.63 E-value=6.1 Score=44.92 Aligned_cols=133 Identities=19% Similarity=0.204 Sum_probs=69.9
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHH--HHHHHhhCCCce
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVA--ASAATSINPRLN 288 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~va--a~~l~~~np~v~ 288 (800)
...||.|.|.|.||-.+++.|...+. +...|+.|. |.-+...+..-+.|.. --|+.+.++- ......+| +-+
T Consensus 59 ~~~kVaInGfGrIGR~vlr~l~~~~~---~~~evvaIN-d~~~~~~~ayLl~yDS-~hG~f~~~v~~~~g~~l~v~-gk~ 132 (395)
T PLN03096 59 AKIKVAINGFGRIGRNFLRCWHGRKD---SPLDVVAIN-DTGGVKQASHLLKYDS-TLGTFDADVKPVGDDAISVD-GKV 132 (395)
T ss_pred cccEEEEECcCHHHHHHHHHHHhCCC---CCeEEEEEc-CCCCHHHHHHHHhhcc-cCCCcCCcEEEecCCEEEEC-CEE
Confidence 33689999999999999999886542 124666553 4444444433223322 3366554331 11111111 112
Q ss_pred EEEEecccCCCcccccchhhc--cCccEEEEccCCHHHHHHHhhhccccccc-EEEecccCcccceEEEeCCcc
Q 003714 289 IEALQNRVGPETENVFDDTFW--ENITCVINALDNVNARLYVDQRCLYFQKP-LLESGTLGAKCNTQMVIPHLT 359 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~--~~~dvVi~a~Dn~~ar~~l~~~c~~~~~p-li~sgt~G~~G~v~~~ip~~t 359 (800)
|.....+ .+ ++ .. | .+.|+|+.|+.....|.+...... .|.. ++-++. .++.+..++|++.
T Consensus 133 I~v~~~~-dp--~~---~~-w~~~gvDiVie~TG~f~s~~~a~~hl~-aGAkkV~iSap--~~~~~ptvV~GVN 196 (395)
T PLN03096 133 IKVVSDR-NP--LN---LP-WGELGIDLVIEGTGVFVDREGAGKHIQ-AGAKKVLITAP--GKGDIPTYVVGVN 196 (395)
T ss_pred EEEEEcC-Cc--cc---cc-ccccCCCEEEECcchhhhHHHHHHHHH-CCCEEEEeCCC--CCCCCCeEeCccC
Confidence 2222211 01 11 12 4 489999999998877776543332 2332 333333 3445566777653
No 419
>PRK06184 hypothetical protein; Provisional
Probab=71.41 E-value=3.5 Score=48.35 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=30.2
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
...|+|||+|..|..++-.|++.|+ +++|+|..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi------~v~viE~~ 35 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGV------SFRLIEKA 35 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC------cEEEEeCC
Confidence 4679999999999999999999999 79999864
No 420
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=71.37 E-value=3.7 Score=46.35 Aligned_cols=31 Identities=19% Similarity=0.417 Sum_probs=28.7
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
.|+|||+|..|+..|..|++.|+ +++|+|..
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGI------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC------cEEEEECC
Confidence 58999999999999999999998 89999875
No 421
>PRK06138 short chain dehydrogenase; Provisional
Probab=71.33 E-value=4.2 Score=42.27 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=28.9
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
|++++++|.|+ |+||..+++.|+..|. ++++++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~------~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA------RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC------eEEEecC
Confidence 46778999996 8999999999999986 6777763
No 422
>PRK07060 short chain dehydrogenase; Provisional
Probab=71.32 E-value=4.2 Score=42.03 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=29.5
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+.+++++|.|+ |++|..+++.|+..|. ++++++.
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~------~V~~~~r 41 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA------RVVAAAR 41 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC------EEEEEeC
Confidence 56679999997 8999999999999997 6888774
No 423
>PRK06172 short chain dehydrogenase; Provisional
Probab=71.31 E-value=4.2 Score=42.47 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=29.0
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+++++++|.|+ |+||.++++.|+..|. ++++++.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~------~v~~~~r 39 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA------KVVVADR 39 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeC
Confidence 56789999996 8999999999999986 6777764
No 424
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=71.30 E-value=2.8 Score=47.75 Aligned_cols=41 Identities=32% Similarity=0.565 Sum_probs=34.7
Q ss_pred ccccchhHHHhhhhhhhhhhhcccCcccccc-ceeeecccCC
Q 003714 137 RAVLNPMAAMFGGIVGQEVVKACSGKFHPLY-QFFYFDSVES 177 (800)
Q Consensus 137 ~~el~PvaA~iGGi~aQEviK~it~k~~Pi~-q~~~fd~~~~ 177 (800)
.+-+.|+.+++|++.|+|+||.|+|...|+. ..+.||..+.
T Consensus 206 ~gv~g~~~~~~g~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~ 247 (392)
T PRK07878 206 GGVLGVLCASIGSIMGTEAIKLITGIGEPLLGRLMVYDALEM 247 (392)
T ss_pred CCccchHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCC
Confidence 4579999999999999999999999888875 5667887543
No 425
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=71.26 E-value=4.4 Score=45.18 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=35.8
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCC
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLS 258 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLn 258 (800)
...+|+|||+|-+|+..+-.|++.|. +++++|.+.+...+-.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~------~V~vie~~~~~~g~s~ 44 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA------DVTVLEAGEAGGGAAG 44 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC------EEEEEecCccCCcchh
Confidence 35689999999999999999999997 8999998888654433
No 426
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=71.21 E-value=12 Score=38.96 Aligned_cols=137 Identities=16% Similarity=0.150 Sum_probs=75.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcc----c-c-CCC------------------------cceEEe---------------
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGV----S-C-GNQ------------------------GKLTIT--------------- 247 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv----~-~-~~~------------------------g~i~iv--------------- 247 (800)
.++.|+|.|-+|..++..|+..|. + + +++ +.++++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~ 81 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAELR 81 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHHH
Confidence 468999999999999999999985 1 1 110 111110
Q ss_pred ----cCCcccccCCCcccccccCcccc-cHHHHHHHHHHhhCCCceEE-EEecccCCCcccccchhhccCccEEEEccCC
Q 003714 248 ----DDDVIEKSNLSRQFLFRDWNIGQ-AKSTVAASAATSINPRLNIE-ALQNRVGPETENVFDDTFWENITCVINALDN 321 (800)
Q Consensus 248 ----D~D~Ie~sNLnRQflf~~~dIG~-~Ka~vaa~~l~~~np~v~i~-~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn 321 (800)
|.=.|+.+|---- .+...+++. +-...+++.+.+.-|.-++. +++.-.-..-++.-... .+.| |.-|-|+
T Consensus 82 ~~~~~KIvID~tnp~~~-~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~--~~~~-v~vagDD 157 (211)
T COG2085 82 DALGGKIVIDATNPIEV-NGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPG--GRRD-VLVAGDD 157 (211)
T ss_pred HHhCCeEEEecCCCccc-cCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcC--Ccee-EEEecCc
Confidence 1112334442100 222223332 22334666666777766432 33321110000000000 1333 5667799
Q ss_pred HHHHHHHhhhcccccccEEEecccCcccceEE
Q 003714 322 VNARLYVDQRCLYFQKPLLESGTLGAKCNTQM 353 (800)
Q Consensus 322 ~~ar~~l~~~c~~~~~pli~sgt~G~~G~v~~ 353 (800)
.+|+..+.+.|...|.--+++|.+--...++.
T Consensus 158 ~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le~ 189 (211)
T COG2085 158 AEAKAVVAELAEDIGFRPLDAGPLENARILEP 189 (211)
T ss_pred HHHHHHHHHHHHhcCcceeecccccccccccc
Confidence 99999999999999999999998876655443
No 427
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=71.20 E-value=4.1 Score=44.13 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=27.3
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+|.|||+|.+|+.++.+|+..|. +++++|.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC------eEEEEcCC
Confidence 58999999999999999999997 78887643
No 428
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=71.17 E-value=4.2 Score=47.26 Aligned_cols=32 Identities=34% Similarity=0.601 Sum_probs=29.4
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
-++++|||.|.||+|++-.|+++|+ ++||+..
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~------~VTiie~ 204 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGS------KVTVVER 204 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC------cEEEEec
Confidence 4689999999999999999999998 8999864
No 429
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=71.16 E-value=4.2 Score=43.19 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=29.8
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcc
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 252 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~I 252 (800)
.|+|||+|..|+.++..|++.|+ +++|+|.+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~------~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGL------RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC------eEEEEeccCC
Confidence 58999999999999999999998 8999997753
No 430
>PRK08339 short chain dehydrogenase; Provisional
Probab=71.11 E-value=4.4 Score=43.04 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=29.1
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
|+++.++|.|+ ||||.++++.|+..|. +++++|.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~------~V~~~~r 40 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA------DVILLSR 40 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC------EEEEEeC
Confidence 56778999996 7999999999999996 7888763
No 431
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=71.10 E-value=4 Score=48.04 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=29.6
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
-.+|.|||+|..|+.++.+|+..|. .++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~------~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH------QVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCC
Confidence 3579999999999999999999998 88998854
No 432
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=71.00 E-value=15 Score=39.46 Aligned_cols=29 Identities=21% Similarity=0.532 Sum_probs=24.8
Q ss_pred cEEEEcC-CchHHHHHHHHHHhccccCCCcceEEec
Q 003714 214 KVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 214 ~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
+|+|+|+ |.||..+++.|+..|. +++++|
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~------~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH------EVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC------eEEEEe
Confidence 6899985 9999999999999986 677765
No 433
>PLN02256 arogenate dehydrogenase
Probab=70.99 E-value=3.9 Score=44.97 Aligned_cols=35 Identities=29% Similarity=0.291 Sum_probs=29.2
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+-+..+|.|||+|.+|..+++.|...|. .|+++|.
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~------~V~~~d~ 67 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGH------TVLATSR 67 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCC------EEEEEEC
Confidence 3355789999999999999999998875 6777773
No 434
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=70.98 E-value=4 Score=46.25 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=30.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
.+|+|||+|..|+.+|-.|++.|+ +++|+|...
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~------~v~v~E~~~ 51 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGL------RIALIEAQP 51 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCC------EEEEEecCC
Confidence 469999999999999999999998 899998764
No 435
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=70.98 E-value=3.9 Score=47.85 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=29.1
Q ss_pred HhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEec
Q 003714 210 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
+.+++++|+|+||+|..+++.|+..|. +++++|
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~------~V~i~~ 362 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA------ELLIFN 362 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC------EEEEEe
Confidence 567899999999999999999999997 677765
No 436
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.97 E-value=4 Score=47.60 Aligned_cols=37 Identities=19% Similarity=0.432 Sum_probs=32.2
Q ss_pred HHHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 208 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 208 ~~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
..+..++|+|+|+|+.|..+++.|...|. .+++.|.+
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~------~V~~~D~~ 47 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGC------DVVVADDN 47 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCC------EEEEECCC
Confidence 45667899999999999999999999997 78888853
No 437
>PRK05868 hypothetical protein; Validated
Probab=70.94 E-value=4.3 Score=45.63 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=29.4
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
.+|+|||+|..|+.++..|++.|+ +++|+|..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~------~v~viE~~ 33 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGY------SVTMVERH 33 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC------CEEEEcCC
Confidence 479999999999999999999998 79999875
No 438
>PRK07791 short chain dehydrogenase; Provisional
Probab=70.94 E-value=9.6 Score=41.04 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=29.5
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.++++.++|.|+ ||||.++++.|+..|. +++++|.
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~------~vii~~~ 38 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGA------RVVVNDI 38 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEeeC
Confidence 356788999995 7999999999999997 7777764
No 439
>PRK06500 short chain dehydrogenase; Provisional
Probab=70.92 E-value=4.1 Score=42.27 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=29.6
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+.+++++|.|+ |+||.++++.|+..|. ++++++.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~------~v~~~~r~ 39 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGA------RVAITGRD 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEecCC
Confidence 56788999996 9999999999999997 67777643
No 440
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.89 E-value=8.2 Score=39.71 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=30.2
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
|++++++|.|+ |+||..+++.|+..|. +++++|.+.
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~------~v~~~~r~~ 39 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGA------QVYGVDKQD 39 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCC------EEEEEeCCc
Confidence 55678999995 8999999999999996 788887653
No 441
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=70.86 E-value=2.9 Score=47.35 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=34.0
Q ss_pred ccccchhHHHhhhhhhhhhhhcccCcccccc-ceeeecccC
Q 003714 137 RAVLNPMAAMFGGIVGQEVVKACSGKFHPLY-QFFYFDSVE 176 (800)
Q Consensus 137 ~~el~PvaA~iGGi~aQEviK~it~k~~Pi~-q~~~fd~~~ 176 (800)
.+-+.|+.+++|++.|+|++|.++|...|+. +.+.||..+
T Consensus 299 ~gv~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~ 339 (376)
T PRK08762 299 AGVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALA 339 (376)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCC
Confidence 4568899999999999999999999988875 666788754
No 442
>PRK12939 short chain dehydrogenase; Provisional
Probab=70.85 E-value=4.4 Score=42.01 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=28.0
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEec
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
+++++++|.|+ |+||.++++.|+..|. ++++++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~------~v~~~~ 38 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA------TVAFND 38 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC------EEEEEe
Confidence 45688999996 8999999999999997 676664
No 443
>PLN02253 xanthoxin dehydrogenase
Probab=70.65 E-value=4.1 Score=43.38 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=29.6
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.+.+++++|.|+ |+||.++++.|+..|. +++++|.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~------~v~~~~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA------KVCIVDL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC------EEEEEeC
Confidence 456788999995 8999999999999997 7888763
No 444
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=70.57 E-value=3.8 Score=45.84 Aligned_cols=32 Identities=25% Similarity=0.582 Sum_probs=29.0
Q ss_pred cEEEEcCCchHHHHHHHHHHhc-cccCCCcceEEecCCc
Q 003714 214 KVFIVGSGALGCEFLKNVALMG-VSCGNQGKLTITDDDV 251 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~G-v~~~~~g~i~ivD~D~ 251 (800)
.|+|||+|..|+.++..|++.| + +++|+|...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~------~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKI------KIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCc------eEEEEeCCC
Confidence 3899999999999999999999 9 889998764
No 445
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=70.52 E-value=4.5 Score=43.85 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=27.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
.+|.|||+|.+|..++++|+..|. .+++.|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~------~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY------SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC------eEEEEcCC
Confidence 479999999999999999999987 67777643
No 446
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=70.47 E-value=4 Score=45.88 Aligned_cols=33 Identities=21% Similarity=0.460 Sum_probs=30.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
..|+|||+|..|+.++..|++.|+ +++|+|...
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~------~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGF------SVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCC------EEEEEcCCC
Confidence 479999999999999999999998 899999764
No 447
>PRK08244 hypothetical protein; Provisional
Probab=70.45 E-value=4.1 Score=47.57 Aligned_cols=32 Identities=31% Similarity=0.531 Sum_probs=29.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
..|+|||+|..|..++..|++.|+ +++|+|..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~------~v~viEr~ 34 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGV------KTCVIERL 34 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC------cEEEEecC
Confidence 579999999999999999999999 89999864
No 448
>PRK08163 salicylate hydroxylase; Provisional
Probab=70.26 E-value=4.3 Score=45.68 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=30.7
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
..+|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~------~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGI------KVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCC------cEEEEeeCc
Confidence 4689999999999999999999998 899998753
No 449
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=70.23 E-value=4.4 Score=45.80 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=30.4
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
...|+|||+|..|..++-.|++.|+ +++|+|..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~------~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGL------DVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC------cEEEEccC
Confidence 4579999999999999999999998 99999876
No 450
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=70.11 E-value=3.8 Score=46.89 Aligned_cols=41 Identities=24% Similarity=0.329 Sum_probs=34.1
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcc
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQ 260 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQ 260 (800)
+|.|||+|-+|..++.+|+..|. +++++|.+.=....|+++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~------~V~~~d~~~~~v~~l~~g 42 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH------EVTGVDIDQEKVDKLNKG 42 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC------eEEEEECCHHHHHHhhcC
Confidence 69999999999999999999997 799999875544455543
No 451
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=70.11 E-value=11 Score=41.42 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=35.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCccccc--CCCcccccc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKS--NLSRQFLFR 264 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~s--NLnRQflf~ 264 (800)
.+|.|||+||-||.++..|.+.|+ ..-.+..+|.|.-.+. .-.+-+++.
T Consensus 1 ~~i~viGvGg~G~n~v~~l~~~~~---~~~~~~a~ntD~~~L~~~~~~~k~~ig 51 (304)
T cd02201 1 AKIKVIGVGGGGGNAVNRMIESGL---EGVEFIAANTDAQALAKSKAPNKIQLG 51 (304)
T ss_pred CeEEEEEeCCcHHHHHHHHHHcCC---CCceEEEEECCHHHHhcCCCCcEEEcC
Confidence 379999999999999999999997 2246778888874444 333444443
No 452
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=70.10 E-value=4.5 Score=46.48 Aligned_cols=33 Identities=30% Similarity=0.511 Sum_probs=29.6
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
..+|+|||+|.+|+|++..|+..|. ++++++..
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~------~Vtli~~~ 189 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGS------KVTVLDAA 189 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC------eEEEEecC
Confidence 5689999999999999999999987 79998763
No 453
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=70.09 E-value=16 Score=39.98 Aligned_cols=83 Identities=16% Similarity=0.278 Sum_probs=58.6
Q ss_pred HHhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCc
Q 003714 209 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 287 (800)
Q Consensus 209 ~L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v 287 (800)
++. .=.+|.|+ .|||-+.++-||+-|+ ++.||- | -+.|-+..++.|.+..+ +
T Consensus 47 ~~g-~WAVVTGaTDGIGKayA~eLAkrG~------nvvLIs----------R---------t~~KL~~v~kEI~~~~~-v 99 (312)
T KOG1014|consen 47 KLG-SWAVVTGATDGIGKAYARELAKRGF------NVVLIS----------R---------TQEKLEAVAKEIEEKYK-V 99 (312)
T ss_pred hcC-CEEEEECCCCcchHHHHHHHHHcCC------EEEEEe----------C---------CHHHHHHHHHHHHHHhC-c
Confidence 444 34667787 6999999999999999 677752 1 36788999999999998 8
Q ss_pred eEEEEecccCCCcccccc--hhhccCcc--EEEEcc
Q 003714 288 NIEALQNRVGPETENVFD--DTFWENIT--CVINAL 319 (800)
Q Consensus 288 ~i~~~~~~v~~~~~~~~~--~~f~~~~d--vVi~a~ 319 (800)
++..+.-+++...+ .++ .+.+.+.| +.||++
T Consensus 100 ev~~i~~Dft~~~~-~ye~i~~~l~~~~VgILVNNv 134 (312)
T KOG1014|consen 100 EVRIIAIDFTKGDE-VYEKLLEKLAGLDVGILVNNV 134 (312)
T ss_pred EEEEEEEecCCCch-hHHHHHHHhcCCceEEEEecc
Confidence 88888777765443 221 23445555 456665
No 454
>PRK08303 short chain dehydrogenase; Provisional
Probab=70.05 E-value=9 Score=41.88 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=30.1
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
|+++.++|.|+ +|||.++++.|+..|. ++++++.+
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~------~Vv~~~r~ 41 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGA------TVYVTGRS 41 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEecc
Confidence 56788999997 6899999999999997 78888754
No 455
>PRK07588 hypothetical protein; Provisional
Probab=70.01 E-value=4.5 Score=45.52 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=29.3
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
.+|+|||+|..|+.++..|++.|+ +++|++.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~------~v~v~E~~ 32 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGH------EPTLIERA 32 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC------ceEEEeCC
Confidence 379999999999999999999998 79999876
No 456
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=69.97 E-value=4.5 Score=44.80 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=30.0
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
+++++|+|.|+ |.||+++++.|+..|. +++++|.+.
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~------~V~~~~r~~ 38 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA------EVYGYSLDP 38 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC------EEEEEeCCC
Confidence 45689999996 8899999999999996 788877553
No 457
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=69.95 E-value=2.6 Score=48.17 Aligned_cols=63 Identities=32% Similarity=0.544 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccCCCCCchhHHHHHHHHHHHHHcCCCCC
Q 003714 450 DCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIP 526 (800)
Q Consensus 450 ~c~~~A~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~ 526 (800)
+|--|...-...+|...|+.|--.+|.. .+.|. +.||.+++.-++||.+|||+||.+|||+-.
T Consensus 305 ~~~v~~v~~~~~vf~~~i~~l~~~~~~~------~~h~~--------l~fdKdd~~~~~FVaaaaNiRa~if~ipmk 367 (603)
T KOG2013|consen 305 DQNVWTVDEGAVVFRLSIQALDLRCPKE------SDHWY--------LIFDKDDASTMEFVAAAANIRAHIFGIPMK 367 (603)
T ss_pred CcceeeeccccHHHHHHHHHhcccCCcc------CCCce--------EEEcCCcHHHHHHHHHHhhhhhhhhccchh
Confidence 4445666667788999999885444432 23343 689999999999999999999999999743
No 458
>PRK09072 short chain dehydrogenase; Provisional
Probab=69.93 E-value=4.7 Score=42.51 Aligned_cols=34 Identities=26% Similarity=0.598 Sum_probs=29.1
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+++.+++|.|+ |+||.++++.|+..|. ++++++.
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~------~V~~~~r 37 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGA------RLLLVGR 37 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEEC
Confidence 45678999995 9999999999999996 7888874
No 459
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=69.93 E-value=8.1 Score=40.34 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=26.6
Q ss_pred cEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 214 KVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 214 ~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+|+|.|+ |++|.++++.|+..|. +++++|.+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~------~V~~~~r~ 33 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH------KVIATGRR 33 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC------EEEEEECC
Confidence 6899995 8999999999999997 78887653
No 460
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=69.89 E-value=4.5 Score=47.68 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=29.2
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
++|.|||+|..|+.++.+|+..|+ .+++.|.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~------~V~l~D~~ 39 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH------TVLLYDAR 39 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------eEEEEeCC
Confidence 579999999999999999999998 88998854
No 461
>PRK09134 short chain dehydrogenase; Provisional
Probab=69.84 E-value=11 Score=39.63 Aligned_cols=32 Identities=13% Similarity=0.293 Sum_probs=25.8
Q ss_pred hcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEec
Q 003714 211 EDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 211 ~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
.+++++|.|+ |+||.++++.|+..|. ++.+++
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~------~v~~~~ 40 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGF------DVAVHY 40 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEe
Confidence 3467999996 8999999999999996 555543
No 462
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=69.74 E-value=4.4 Score=42.50 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=28.5
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEec
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
+.+++|+|.|+ |+||.++++.|+..|. +++++|
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~------~vv~~~ 42 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGA------SVVVSD 42 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC------eEEEEe
Confidence 66889999995 8999999999999997 666665
No 463
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=69.63 E-value=4.5 Score=45.44 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=30.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
..|+|||+|..|..++..|++.|+ +++|+|...
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~------~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGI------KTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCC------eEEEecCCC
Confidence 369999999999999999999998 899999764
No 464
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.57 E-value=4.9 Score=41.51 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=27.7
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEe-c
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTIT-D 248 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iv-D 248 (800)
|.+++++|+|+ |+||.++++.|+..|. +++++ +
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~------~v~~~~~ 37 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGA------KVVIAYD 37 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEcC
Confidence 56778999996 9999999999999997 56665 5
No 465
>PLN02985 squalene monooxygenase
Probab=69.55 E-value=4.6 Score=47.73 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=30.1
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
..|+|||+|..|+.++..|++.|. +++|+|.+.
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~------~V~vlEr~~ 76 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGR------RVHVIERDL 76 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCC------eEEEEECcC
Confidence 469999999999999999999997 899999864
No 466
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=69.50 E-value=4.8 Score=42.43 Aligned_cols=35 Identities=14% Similarity=0.395 Sum_probs=29.6
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+++++++|.|+ ||||.++++.|+..|. +++++|.+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~------~V~~~~r~ 39 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGA------RVAVLERS 39 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56788999996 7999999999999997 68887643
No 467
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=69.50 E-value=4.5 Score=44.92 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=30.0
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcccc-CCCcceEEecCC
Q 003714 213 AKVFIVGS-GALGCEFLKNVALMGVSC-GNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~-GgiG~evlknLa~~Gv~~-~~~g~i~ivD~D 250 (800)
.||+|+|+ |.+|+.++..|+..|++. ...-.|.++|..
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~ 42 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIP 42 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcC
Confidence 47999999 999999999999999842 011278998853
No 468
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=69.44 E-value=11 Score=38.66 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=23.8
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhcc
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGV 236 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv 236 (800)
+++++++|.|+ |++|.++++.|+..|.
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~ 30 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGA 30 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35678999995 8999999999999997
No 469
>PRK07825 short chain dehydrogenase; Provisional
Probab=69.43 E-value=4.8 Score=42.71 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=28.9
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+++++++|.|+ ||||.++++.|+..|. ++++++.+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~------~v~~~~r~ 38 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGA------RVAIGDLD 38 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEECC
Confidence 44678999996 8999999999999997 67776643
No 470
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=69.39 E-value=5.5 Score=46.18 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=34.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHh--ccccCCCcceEEecCCcccccCCCcc
Q 003714 213 AKVFIVGSGALGCEFLKNVALM--GVSCGNQGKLTITDDDVIEKSNLSRQ 260 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~--Gv~~~~~g~i~ivD~D~Ie~sNLnRQ 260 (800)
..|+|||+|-+|+.+|..|+.. |. +++|+|.+.+....-.|+
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~------~V~vlE~~~~g~GaSgrn 68 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPAL------DVLVLEADLCGAGASGRN 68 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCC------eEEEEeCCcccccccccc
Confidence 4799999999999999999998 65 899999988754444443
No 471
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=69.38 E-value=6.3 Score=43.74 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=28.4
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.+.++++.|+|.|.||..+++.+. |++ -+|...|.
T Consensus 143 ~l~gktvGIiG~GrIG~avA~r~~--~Fg----m~v~y~~~ 177 (324)
T COG1052 143 DLRGKTLGIIGLGRIGQAVARRLK--GFG----MKVLYYDR 177 (324)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHh--cCC----CEEEEECC
Confidence 588999999999999999999998 552 26666553
No 472
>PRK08264 short chain dehydrogenase; Validated
Probab=69.36 E-value=5 Score=41.40 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=30.4
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+.+++|+|.|+ |+||.++++.|+..|. .++++++.+
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~-----~~V~~~~r~ 40 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGA-----AKVYAAARD 40 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCc-----ccEEEEecC
Confidence 46678999995 9999999999999997 578887644
No 473
>PRK14727 putative mercuric reductase; Provisional
Probab=69.24 E-value=4.8 Score=46.97 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=29.6
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
..+|+|||.|.+|+|++..|+..|. +++|+..+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~------~Vtlv~~~ 220 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGS------RVTILARS 220 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC------EEEEEEcC
Confidence 4789999999999999999999997 89998654
No 474
>PRK07411 hypothetical protein; Validated
Probab=69.14 E-value=3.3 Score=47.11 Aligned_cols=40 Identities=20% Similarity=0.391 Sum_probs=34.0
Q ss_pred ccccchhHHHhhhhhhhhhhhcccCcccccc-ceeeecccC
Q 003714 137 RAVLNPMAAMFGGIVGQEVVKACSGKFHPLY-QFFYFDSVE 176 (800)
Q Consensus 137 ~~el~PvaA~iGGi~aQEviK~it~k~~Pi~-q~~~fd~~~ 176 (800)
.+-+.|+.+++|.+.|+|+||.++|...|+. +.++||..+
T Consensus 198 ~gvlg~~~~~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~ 238 (390)
T PRK07411 198 GGVLGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALD 238 (390)
T ss_pred CCcCcchHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEECCC
Confidence 4679999999999999999999999987776 556788754
No 475
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=69.07 E-value=11 Score=41.19 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=28.0
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
..+|+|.|+|++|..++..+..+|. .+++++|.
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~-----~~vi~~~~ 196 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGA-----EDVIGVDP 196 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-----CEEEEECC
Confidence 6799999999999999998888998 44777753
No 476
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=69.04 E-value=4.3 Score=45.68 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=29.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
.+|+|||+|..|..++-.|++.|+ +++|+|..
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~------~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGR------SVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCC------cEEEEcCC
Confidence 579999999999999999999998 89999965
No 477
>PRK05650 short chain dehydrogenase; Provisional
Probab=68.94 E-value=12 Score=39.70 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=25.9
Q ss_pred cEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 214 KVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 214 ~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+|+|.|+ |+||.++++.|+..|. +++++|.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~------~V~~~~r 32 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW------RLALADV 32 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC------EEEEEeC
Confidence 6899985 8999999999999997 6777764
No 478
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=68.91 E-value=4.6 Score=44.99 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=29.7
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcc
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 252 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~I 252 (800)
.|+|||+|..|+.+|..|++.|+ +++|+|.+.-
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~------~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGL------KIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCC------EEEEEeCCCc
Confidence 38999999999999999999998 8999887754
No 479
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=68.90 E-value=14 Score=41.34 Aligned_cols=34 Identities=15% Similarity=-0.007 Sum_probs=25.3
Q ss_pred ccCccEEEEccCCHHHHHHHhhhcccccccEEEec
Q 003714 309 WENITCVINALDNVNARLYVDQRCLYFQKPLLESG 343 (800)
Q Consensus 309 ~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~pli~sg 343 (800)
+.+.|+|+.|+.+-....++.. |...++++|+.+
T Consensus 66 ~~~vD~Vf~alP~~~~~~~v~~-a~~aG~~VID~S 99 (343)
T PRK00436 66 LAGADVVFLALPHGVSMDLAPQ-LLEAGVKVIDLS 99 (343)
T ss_pred hcCCCEEEECCCcHHHHHHHHH-HHhCCCEEEECC
Confidence 4679999999988766665555 456788888744
No 480
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=68.77 E-value=4.8 Score=46.82 Aligned_cols=32 Identities=19% Similarity=0.437 Sum_probs=29.3
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.++|+|||.|.+|+|++..|+..|. ++++++.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~------~Vtlie~ 205 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGA------QVTVVEY 205 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC------eEEEEeC
Confidence 5799999999999999999999997 8999875
No 481
>PRK08223 hypothetical protein; Validated
Probab=68.71 E-value=3.5 Score=44.90 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=32.2
Q ss_pred cchhHHHhhhhhhhhhhhcccCccccc--cceeeecccCC
Q 003714 140 LNPMAAMFGGIVGQEVVKACSGKFHPL--YQFFYFDSVES 177 (800)
Q Consensus 140 l~PvaA~iGGi~aQEviK~it~k~~Pi--~q~~~fd~~~~ 177 (800)
..|+|.++|++.|.|+||.++|...|+ -..++||+...
T Consensus 218 ~g~~~g~~g~~~a~E~ik~l~g~g~~~~~~~~~~~d~~~~ 257 (287)
T PRK08223 218 TGLACQLCAGVVATEVLKILLGRGRVYAAPWFHQFDAYRS 257 (287)
T ss_pred ccchHHHHHHHHHHHHHHHHhCCCCcCCCCeEEEEEcCCc
Confidence 388899999999999999999998885 36778997543
No 482
>PRK07326 short chain dehydrogenase; Provisional
Probab=68.70 E-value=5.4 Score=41.04 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=27.6
Q ss_pred hcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 211 EDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 211 ~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.+.+|+|+|+ |++|.++++.|+..|. ++++++.
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~------~V~~~~r 38 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGY------KVAITAR 38 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC------EEEEeeC
Confidence 4578999996 8999999999999887 6777653
No 483
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=68.55 E-value=4.9 Score=46.13 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=32.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCc
Q 003714 213 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSR 259 (800)
Q Consensus 213 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnR 259 (800)
.+|.|||+|-+|..++.+|+..|. +++.+|.|.-....+++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~------~V~~~D~~~~~v~~l~~ 44 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK------QVIGVDINQHAVDTINR 44 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC------EEEEEeCCHHHHHHHHC
Confidence 589999999999999999999997 88999875433333433
No 484
>PTZ00052 thioredoxin reductase; Provisional
Probab=68.51 E-value=5.1 Score=47.10 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=28.8
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
..+++|||.|.+|+|++..|+..|. +++++..
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~------~Vtli~~ 213 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGF------DVTVAVR 213 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC------cEEEEEc
Confidence 3589999999999999999999997 8999864
No 485
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.47 E-value=15 Score=40.68 Aligned_cols=62 Identities=15% Similarity=0.277 Sum_probs=46.6
Q ss_pred hcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccccCcccccHHHHHHHHHHhhCCCceE
Q 003714 211 EDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 289 (800)
Q Consensus 211 ~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~dIG~~Ka~vaa~~l~~~np~v~i 289 (800)
....++|-|+ .|||-|+++.||+.|. ++++.-.| ..|++.+++.+++-.+..+|
T Consensus 34 ~~~~~vVTGansGIG~eta~~La~~Ga------~Vv~~~R~-------------------~~~~~~~~~~i~~~~~~~~i 88 (314)
T KOG1208|consen 34 SGKVALVTGATSGIGFETARELALRGA------HVVLACRN-------------------EERGEEAKEQIQKGKANQKI 88 (314)
T ss_pred CCcEEEEECCCCchHHHHHHHHHhCCC------EEEEEeCC-------------------HHHHHHHHHHHHhcCCCCce
Confidence 3367788886 7999999999999996 77775322 15788888888886667777
Q ss_pred EEEecccC
Q 003714 290 EALQNRVG 297 (800)
Q Consensus 290 ~~~~~~v~ 297 (800)
..+.-++.
T Consensus 89 ~~~~lDLs 96 (314)
T KOG1208|consen 89 RVIQLDLS 96 (314)
T ss_pred EEEECCCC
Confidence 77766554
No 486
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=68.45 E-value=4.7 Score=47.78 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=31.8
Q ss_pred HHhcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 209 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.|.+++|.|||.|.||.++++.|...|. ++..+|.
T Consensus 137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~ 171 (526)
T PRK13581 137 ELYGKTLGIIGLGRIGSEVAKRAKAFGM------KVIAYDP 171 (526)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECC
Confidence 5889999999999999999999998887 7888874
No 487
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=68.34 E-value=4.8 Score=47.78 Aligned_cols=34 Identities=32% Similarity=0.552 Sum_probs=30.3
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
...|+|||+|..|..++..|++.|+ +++|+|...
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~------~v~viE~~~ 56 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGV------PVVLLDDDD 56 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC------cEEEEeCCC
Confidence 3579999999999999999999998 789988654
No 488
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=68.29 E-value=11 Score=39.51 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=27.8
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEec
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
++++.++|.|+ ||||.++++.|+..|. +++++|
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~------~vv~~~ 41 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGC------DIVGIN 41 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEec
Confidence 56788999995 7899999999999997 666665
No 489
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=68.24 E-value=5.7 Score=45.78 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=29.7
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
..+|+|||.|.+|+|++..|+..|. ++++++..
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~------~Vtli~~~ 180 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGL------HPTLIHRS 180 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC------cEEEEecc
Confidence 4789999999999999999999997 89998853
No 490
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=68.23 E-value=5.1 Score=45.45 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=32.3
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
+..+|+|||+|.-|...+..|.+.|. ++.|+|+|.+.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~----~~~I~li~~e~ 38 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGF----TGELHLFSDER 38 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCC----CCCEEEeCCCC
Confidence 45689999999999999999999886 37999998763
No 491
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=67.93 E-value=5.9 Score=43.63 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=30.0
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 213 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
.||.|+|+ |.+|..++..|+..|+. +.|+++|.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~----~~v~lvd~~ 35 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVV----KEINLISRP 35 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC----CEEEEEECc
Confidence 47999998 99999999999999983 589999863
No 492
>PRK06126 hypothetical protein; Provisional
Probab=67.93 E-value=4.9 Score=47.57 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=30.0
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
..+|+|||+|..|..++-.|++.|+ +++|+|..
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~------~v~viEr~ 39 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGV------DSILVERK 39 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCC------cEEEEeCC
Confidence 4579999999999999999999999 88999864
No 493
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=67.91 E-value=5.3 Score=45.13 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=30.7
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecCCc
Q 003714 212 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~ 251 (800)
..+|+|||+|..|+.++..|++.|+ +++|+|...
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~------~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGI------DSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCC------CEEEEEcCC
Confidence 4679999999999999999999998 789988765
No 494
>PRK08507 prephenate dehydrogenase; Validated
Probab=67.91 E-value=5.7 Score=42.71 Aligned_cols=31 Identities=26% Similarity=0.287 Sum_probs=26.0
Q ss_pred cEEEEcCCchHHHHHHHHHHhccccCCCcceEEec
Q 003714 214 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 248 (800)
Q Consensus 214 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD 248 (800)
+|.|||+|.+|..++..|...|.. ..++++|
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~----~~v~~~d 32 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLI----SKVYGYD 32 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCC----CEEEEEc
Confidence 699999999999999999999861 3566665
No 495
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=67.81 E-value=31 Score=37.83 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=68.0
Q ss_pred CcEEEEc-CCchHHHHHHHHHHhccccCCCcceEEecCCcccccCCCcccccc------cCcccccHHHHHHHHHHhhCC
Q 003714 213 AKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFR------DWNIGQAKSTVAASAATSINP 285 (800)
Q Consensus 213 ~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~------~~dIG~~Ka~vaa~~l~~~np 285 (800)
.+|||.| +|=|||..++.|...|. .++|+|+ .+|=+|..+-+ +.||.- .+.+.+.+.+..|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~------~vvV~DN----L~~g~~~~v~~~~~~f~~gDi~D--~~~L~~vf~~~~i 68 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH------EVVVLDN----LSNGHKIALLKLQFKFYEGDLLD--RALLTAVFEENKI 68 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC------eEEEEec----CCCCCHHHhhhccCceEEecccc--HHHHHHHHHhcCC
Confidence 3688886 89999999999999997 8899883 34434433332 234433 2345556666666
Q ss_pred CceEEEEecc-cCCCcccccchhhccCccEEEEccCCHHHHHHHhhhccccccc-EEEecccCcccc
Q 003714 286 RLNIEALQNR-VGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKP-LLESGTLGAKCN 350 (800)
Q Consensus 286 ~v~i~~~~~~-v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~l~~~c~~~~~p-li~sgt~G~~G~ 350 (800)
+.-|+.-... |++.... ..+++. .|+-.-.-+-+.|+.+++. +|.|.|.-.+|.
T Consensus 69 daViHFAa~~~VgESv~~--Pl~Yy~---------NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~ 124 (329)
T COG1087 69 DAVVHFAASISVGESVQN--PLKYYD---------NNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGE 124 (329)
T ss_pred CEEEECccccccchhhhC--HHHHHh---------hchHhHHHHHHHHHHhCCCEEEEecchhhcCC
Confidence 6555543222 2211111 012222 2444445566777777764 778888777775
No 496
>PRK06196 oxidoreductase; Provisional
Probab=67.80 E-value=5.4 Score=43.58 Aligned_cols=35 Identities=20% Similarity=0.386 Sum_probs=29.8
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+.+++|+|.|+ ||||.++++.|+..|. ++++++.+
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~------~Vv~~~R~ 59 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGA------HVIVPARR 59 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56778999997 8999999999999997 78887643
No 497
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.77 E-value=5.7 Score=41.94 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=29.2
Q ss_pred HhcCcEEEEcCC---chHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGSG---ALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~G---giG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
++++.++|.|++ |||.++++.|+..|. ++.++|.
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~------~v~l~~r 44 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGA------ELAVTYL 44 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCC------EEEEEeC
Confidence 567889999975 899999999999997 7888764
No 498
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.76 E-value=13 Score=39.25 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=28.9
Q ss_pred HhcCcEEEEcC---CchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 210 LEDAKVFIVGS---GALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlvvG~---GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
+.++.++|.|+ +|||.++++.|+..|. ++++++.
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~------~v~~~~r 41 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA------KLVFTYA 41 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC------EEEEecC
Confidence 56788999997 5999999999999997 7777753
No 499
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=67.71 E-value=5.6 Score=41.59 Aligned_cols=35 Identities=23% Similarity=0.418 Sum_probs=30.5
Q ss_pred HhcCcEEEEcC-CchHHHHHHHHHHhccccCCCcceEEecCC
Q 003714 210 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~ivD~D 250 (800)
+.+++++|.|+ |+||..+++.|+..|. +++++|.+
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~------~v~~~~r~ 44 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA------HVLVNGRN 44 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC------eEEEEeCC
Confidence 67889999996 8999999999999997 78888754
No 500
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=67.69 E-value=19 Score=39.87 Aligned_cols=33 Identities=15% Similarity=0.359 Sum_probs=28.0
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhccccCCCcceEEecC
Q 003714 211 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 211 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~ 249 (800)
.+.+|+|+|+|++|...+..+..+|. +++++|.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~------~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF------EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC------eEEEEec
Confidence 56899999999999999988888887 5777764
Done!