Query 003714
Match_columns 800
No_of_seqs 358 out of 2330
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 17:39:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003714.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1764-1768//hhsearch_pdb/003714hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cmm_A Ubiquitin-activating en 1.0 1 1 1523.0 64.8 792 1-799 210-1015(1015)
2 1y8q_B Anthracycline-, ubiquit 1.0 1 1 858.8 28.6 519 197-786 2-536 (640)
3 1z7l_A Ubiquitin-activating en 1.0 1 1 538.0 23.6 268 368-642 9-276 (276)
4 2nvu_B Maltose binding protein 1.0 1 1 479.3 25.3 359 194-761 392-779 (805)
5 1tt5_B Ubiquitin-activating en 1.0 1 1 470.2 22.9 360 193-761 7-408 (434)
6 1tt5_A APPBP1, amyloid protein 1.0 1 1 311.7 23.0 190 193-392 13-202 (531)
7 1y8q_A Ubiquitin-like 1 activa 1.0 1 1 296.5 18.5 171 182-367 10-180 (346)
8 3cmm_A Ubiquitin-activating en 1.0 1 1 285.8 10.7 186 191-394 6-194 (1015)
9 3h8v_A Ubiquitin-like modifier 1.0 1 1 278.4 12.9 167 191-366 12-194 (292)
10 1zud_1 Adenylyltransferase THI 1.0 1 1 271.7 11.6 165 193-366 7-174 (251)
No 1
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=1523.02 Aligned_cols=792 Identities=45% Similarity=0.824 Sum_probs=738.3
Q ss_pred CCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEECEEEECCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 98878998466899079318982478864764468459997521188416688886299864234576789992499999
Q 003714 1 MTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAF 80 (800)
Q Consensus 1 m~~ln~~~~~~i~~~~~~~f~i~~dt~~~~~y~~gG~~~qvK~p~~~~fksL~e~l~~p~~~~~~d~~k~~~~~~l~~al 80 (800)
|+|+|++++++|++++|++|.| +||+.|++|++||+++|||+|+.++|++|++++.+| .++..++.|++++.++|++|
T Consensus 210 m~elN~~e~~~i~~~~p~~f~I-~Dts~~~~yv~~g~~~qvk~p~~i~f~~l~~~l~~p-~~l~~d~~k~~~~~~l~~~~ 287 (1015)
T 3cmm_A 210 LDKLNDGTLFKVEVLGPFAFRI-GSVKEYGEYKKGGIFTEVKVPRKISFKSLKQQLSNP-EFVFSDFAKFDRAAQLHLGF 287 (1015)
T ss_dssp SGGGGSSCCEECEEEETTEEEC-SCCTTTCCCCBCCEEEECCCCEEECCCCHHHHHHSC-CBCCSCGGGTHHHHHHHHHH
T ss_pred CHHHCCCCCEEEEECCCCEEEE-CCCCHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCH-HHHHHHHHCCCCCHHHHHHH
T ss_conf 1421676664669758860685-462100566327546982077643788899997385-77777775058626999999
Q ss_pred HHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999983-99999999888999999999999861999--87753489999999640145312579852234322432
Q 003714 81 QALDKFVSEL-GRFPVAGSEEDAQKLISVATNINESLGDG--RVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVK 157 (800)
Q Consensus 81 ~aL~~f~~~~-gr~P~~~~~~d~~~l~~ia~~i~~~~~~~--~~~~i~~~~i~~~~~~~~~el~Pv~AiiGGivaQEvIK 157 (800)
+||++|+.+| ||+|++++++|++++.+++++++...+.. ....+++++++++++++++||+||||++||++||||||
T Consensus 288 ~Al~~F~~~~~gr~P~~~~~~D~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~el~pvaA~iGGivAQEVIK 367 (1015)
T 3cmm_A 288 QALHQFAVRHNGELPRTMNDEDANELIKLVTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVVAFFGGLVAQEVLK 367 (1015)
T ss_dssp HHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHH
T ss_conf 99999999658999999998999999999999998628885432347699999999864866170888853457999999
Q ss_pred CCCCCCCCCCCEEEECCCCCCCC---CCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 02486410343012024677899---999956778844710034540489889998529399973783389999999981
Q 003714 158 ACSGKFHPLYQFFYFDSVESLPT---EPLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALM 234 (800)
Q Consensus 158 ait~k~~Pi~~~~~~d~~~~~~~---~~l~~~~~~~~~~Ry~rqi~l~G~~~q~~L~~~~V~IvG~GgiG~evlknLa~~ 234 (800)
+|||||+||+|||+||+++++++ ..++++++.+.++||+||+++||.++|++|++++|+||||||+||+++++||++
T Consensus 368 aiT~kf~Pi~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~Ry~rq~~l~G~~~q~kL~~~~VlvVGaGGlGsevlk~La~~ 447 (1015)
T 3cmm_A 368 ACSGKFTPLKQFMYFDSLESLPDPKNFPRNEKTTQPVNSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALL 447 (1015)
T ss_dssp HHHCBSCCCCSEEEEECGGGSCCTTTSCCSTTTTSCCSSTTHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCEEEECCHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHCCHHHHHHHHCCEEEEEECCHHHHHHHHHHHHC
T ss_conf 85047776201688633653033345787734303222001337874499999998619599991677999999999973
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC--EEEEEECCCCCCCCCCCCHHHCCCC
Q ss_conf 36568883259834983223688754333357533108999999777219986--6999736668773124410110475
Q 003714 235 GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL--NIEALQNRVGPETENVFDDTFWENI 312 (800)
Q Consensus 235 Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~va~~~l~~inp~i--~i~~~~~~i~~~~~~~~~~~~~~~~ 312 (800)
||+||+.|+|+|+|+|+|+.|||||||||+.+|||++||++|+++++++||++ +|+++..+++++++.+++++|++++
T Consensus 448 Gv~~g~~G~i~lvD~D~Ve~SNLnRQ~lf~~~dvG~~Ka~~aa~~l~~iNP~v~~~v~~~~~~i~~~~~~~~~~~~~~~~ 527 (1015)
T 3cmm_A 448 GLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESL 527 (1015)
T ss_dssp TTTCSTTCEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCGGGTTTEEEECCCCSGGGTTTSCHHHHHHC
T ss_pred CCCCCCCCEEEEEECCEECCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHCCHHHHCCC
T ss_conf 86758998699980988442003432167924577799999999999878887664999964247303322027664269
Q ss_pred CEEEECCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 49999368978879984201235554898354686562489918864445778899999999732457999930079989
Q 003714 313 TCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWA 392 (800)
Q Consensus 313 DiVi~a~Dn~~ar~~i~~~c~~~~~pli~sgt~G~~G~v~~~ip~~t~~y~~~~~~~~~~~p~ctl~~fP~~~~h~i~wa 392 (800)
|+|++|+||+++|++++++|+.+++|+|++|+.|++|++++++|+.|+||.|..+|+++++|+||+++||+.++|||+||
T Consensus 528 D~Vi~a~Dn~~aR~~ln~~c~~~~~Pli~~g~~G~~G~v~v~~p~~t~cy~c~~dp~~~~~P~Ctl~~~P~~~~h~i~wa 607 (1015)
T 3cmm_A 528 DFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKIDHTIAWA 607 (1015)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECTTTBCCGGGSCCCCCCCCCHHHHHTCCCSHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99998989999999999878874986899577756665389947999862778999888898634268999928999999
Q ss_pred HHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87733320259267742018934676654203863578989999999522112203668999999999997899999753
Q 003714 393 RSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIF 472 (800)
Q Consensus 393 ~~~f~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~p~~~~~c~~~A~~~f~~~F~~~I~~Ll~ 472 (800)
|++|+++|...++++|+|+++| .|.+.+.+.+..+. +.|+.+++.| ..+|.+|++|++||+.+|+++|+++|+|||+
T Consensus 608 ~~~f~~lf~~~~~~~~~~l~~~-~~~~~~~~~~~~~~-~~l~~~~~~l-~~~~~~~~~c~~~a~~~f~~~F~~~I~~Ll~ 684 (1015)
T 3cmm_A 608 KSLFQGYFTDSAENVNMYLTQP-NFVEQTLKQSGDVK-GVLESISDSL-SSKPHNFEDCIKWARLEFEKKFNHDIKQLLF 684 (1015)
T ss_dssp HHHHHHHHTHHHHHHHHHHHCT-THHHHHHC---CCH-HHHHHHHHHH-HSCCSSHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHCCCHHH-HHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999865456665420481-36889874121027-8999999975-3187758999999999999998899999997
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 099320013798886699999985324899970268899999999998199999--899997789999640478876777
Q 003714 473 TFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIP--DWTNNPKMLAEAVDKVMVPDFLPK 550 (800)
Q Consensus 473 ~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~n~~h~~fi~~~a~L~a~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 550 (800)
+||+|++|++|++||+|+||+|+||+||.+|++|++||.++|+|+|.+|||+.+ .|..+.+.+.++++++.+|+|.|+
T Consensus 685 ~~p~d~~~~~g~~fW~~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~f~~~ 764 (1015)
T 3cmm_A 685 NFPKDAKTSNGEPFWSGAKRAPTPLEFDIYNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPN 764 (1015)
T ss_dssp HSCTTCBCSTTCBSSCTTCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSSTTSSCCHHHHHHHHTTCCCCCCCCC
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 48831013567623357888998703489877889999999876787639997422345799999999860767776786
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 78631132001133445636189999999999884414999997677200036897704589999642100104778888
Q 003714 551 KDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVD 630 (800)
Q Consensus 551 ~~~~~~~~e~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFI~aasNLRA~ny~I~~~~ 630 (800)
++++|..++++...+....++.+.++.|.+++++... ..+.++.|++||||||+|+|||||+|||||||+||+||++|
T Consensus 765 ~~~ki~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~FeKDDd~n~h~dFi~aasNlRa~ny~I~~~~ 842 (1015)
T 3cmm_A 765 ANLKIQVNDDDPDPNANAANGSDEIDQLVSSLPDPST--LAGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETAD 842 (1015)
T ss_dssp SSCCCCSSTTSSCC---------CCHHHHTTSCCGGG--GTTCCCCCCCCCTTCTTSSHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCCEECCCHHHHCCCCCCCCCHHHHHHHHHHHCCCHH--CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 5762014532201001454438999999997402100--03577785156657883028999999988889874999668
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEE
Q ss_conf 7799978277663135667899999999999986089986433210113445632357999996322378751-289899
Q 003714 631 KLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSW-TVWDRW 709 (800)
Q Consensus 631 ~~~~K~iAG~IIPAIaTTtA~VaGl~~lEl~K~l~~~~~~~~~rn~f~nla~p~~~~~eP~~~~~~~~~~~~~-t~wd~~ 709 (800)
|+++|+||||||||||||||+||||+|+|+||++++.+++++|||+|+|||+|++.++||.+|++.++.+.+| |+||||
T Consensus 843 ~~~~k~iaG~IIPAIaTT~AivaGl~~lE~~K~~~~~~~~~~~kn~f~nla~~~~~~~~p~~~~~~~~~~~~~~t~wd~~ 922 (1015)
T 3cmm_A 843 RQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTDIEQYKNGFVNLALPFFGFSEPIASPKGEYNNKKYDKIWDRF 922 (1015)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCEEEEETTTTEEEEECCCBCCEEEETTEEEETTTCEE
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 99999984773751001899999999999999974566424445588860677114447888888877778777578999
Q ss_pred EECCCCCHHHHHHHHHHC-CCCEEEEECCCCEEECCCCC--CHHHCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEEECCC
Q ss_conf 929988799999999985-99221210398312337996--422102681899988630457899612999999952499
Q 003714 710 ILKDNPTLRELIQWLKDK-GLNAYSISCGSCLLFNSMFP--RHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDE 786 (800)
Q Consensus 710 ~i~~~~TL~~li~~~~~~-~l~~~~i~~g~~~lY~~~~~--~~~~~l~~~l~~l~~~~~~~~l~~~~~~l~l~v~~~d~~ 786 (800)
++++++||++|+++++++ |++++||+.|+++||++++| ++++||+++|++|++.++++++|++++||+|+++|+|++
T Consensus 923 ~v~~~~Tl~~li~~~~~~~~~~~~~i~~~~~~ly~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~ 1002 (1015)
T 3cmm_A 923 DIKGDIKLSDLIEHFEKDEGLEITMLSYGVSLLYASFFPPKKLKERLNLPITQLVKLVTKKDIPAHVSTMILEICADDKE 1002 (1015)
T ss_dssp EEESCCBHHHHHHHHHHTTCCEEEEEEETTEEEEETTCCHHHHHHHTTSBHHHHHHHHSSSCCCSSCCEEEEEEEEECTT
T ss_pred EECCCCCHHHHHHHHHHHHCCCCEEECCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEEECCCC
T ss_conf 97999839999999999859861343268867983488724457760687999987505676898731899999953899
Q ss_pred CCCCCCCEEEEEE
Q ss_conf 9843467089993
Q 003714 787 DNDIDIPLISIYF 799 (800)
Q Consensus 787 ~~dv~~P~v~~~~ 799 (800)
++|+++|+|||+|
T Consensus 1003 ~~d~~~p~v~~~~ 1015 (1015)
T 3cmm_A 1003 GEDVEVPFITIHL 1015 (1015)
T ss_dssp SCEECCCEEEEEC
T ss_pred CCCCCCCCEEEEC
T ss_conf 9867787479859
No 2
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=1.00 E-value=1 Score=858.84 Aligned_cols=519 Identities=25% Similarity=0.396 Sum_probs=427.5
Q ss_pred HHHHCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 34540489889998529399973783389999999981365688832598349832236887543333575331089999
Q 003714 197 AQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVA 276 (800)
Q Consensus 197 rqi~l~G~~~q~~L~~~~V~IvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~Ka~va 276 (800)
.|+++||.++|++|++++|+||||||+||+++++||++|| |+|+|+|+|+|+.|||+|||||+.+|||++||+++
T Consensus 2 ~qi~l~G~e~Q~kL~~s~VlVVGaGGLGsevak~La~aGV-----G~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaa 76 (640)
T 1y8q_B 2 ALSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGF-----SHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVA 76 (640)
T ss_dssp ----CCCHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTC-----CEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHH
T ss_pred CHHHHCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCC-----CEEEEECCCEECHHHCCCCCCCCHHHCCHHHHHHH
T ss_conf 6165449999999856969998768899999999998489-----73799539987722048771779467482999999
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEC
Q ss_conf 99777219986699973666877312441011047549999368978879984201235554898354686562489918
Q 003714 277 ASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIP 356 (800)
Q Consensus 277 ~~~l~~inp~i~i~~~~~~i~~~~~~~~~~~~~~~~DiVi~a~Dn~~ar~~i~~~c~~~~~pli~sgt~G~~G~v~~~ip 356 (800)
+++++++||+++|+++..++.... ++.+++.++|+|++|+||+++|++++++|+.+++|+|++|+.|+.|++++++|
T Consensus 77 a~~L~~iNP~v~V~a~~~~i~~~~---~~~~~~~~~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~g~~G~~G~v~vi~p 153 (640)
T 1y8q_B 77 KESVLQFYPKANIVAYHDSIMNPD---YNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKK 153 (640)
T ss_dssp HHHHHTTCTTCEEEEEESCTTSTT---SCHHHHTTCSEEEECCSCHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHCCCCEEEEEECCCCHHH---HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECC
T ss_conf 999998789974999825665023---24766248999998988989999999999874998899987314532899889
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH--HHHHHHCCCCHHH-HHHHHHCCCHHHHHHH
Q ss_conf 864445778899999999732457999930079989877333202592--6774201893467-6654203863578989
Q 003714 357 HLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP--AEVNAYLSNPVEY-TTSMANAGDAQARDNL 433 (800)
Q Consensus 357 ~~t~~y~~~~~~~~~~~p~ctl~~fP~~~~h~i~wa~~~f~~~f~~~~--~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l 433 (800)
+.|+||.|..+|+++.+|.||++++|+.++|||+||++.|+++|+..+ ++++.++++|... ... ......+..+.+
T Consensus 154 ~~t~Cy~C~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~f~~lf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 232 (640)
T 1y8q_B 154 GVTECYECHPKPTQRTFPGATIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPEAAWEPT-EAEARARASNED 232 (640)
T ss_dssp TTSCCTTSSCCCCCCCCCTTTTTSCCCSHHHHHHHHHHHHHHHHSCCCGGGCCSCCTTCTTSCCC---------------
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHH-HHHHHHHHHHHH
T ss_conf 9998745578898765120023489886277999999999998478630334201323445554454-431001234456
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 999999522112203668999999-9999978999997530993200137988866999999853248999702688999
Q 003714 434 ERVLECLDKEKCEIFQDCITWARL-KFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMA 512 (800)
Q Consensus 434 ~~~~~~l~~~~p~~~~~c~~~A~~-~f~~~F~~~I~~Ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~n~~h~~fi~~ 512 (800)
+.+... ...+|.+|+.||+. +|+++|+++|+|||++ ++||++ ||+|+||+||..++.|+...
T Consensus 233 ~~~~~~----~~~~~~~~~~~a~~~~f~k~F~~~I~~Ll~~----------~~fW~~-kr~P~pl~fd~~~~~~~~~~-- 295 (640)
T 1y8q_B 233 GDIKRI----STKEWAKSTGYDPVKLFTKLFKDDIRYLLTM----------DKLWRK-RKPPVPLDWAEVQSQGEETN-- 295 (640)
T ss_dssp -----------CHHHHHHTTSCHHHHHHHHHTHHHHHHTTC----------GGGCSS-SCCCCCCCHHHHHHC-------
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCCCC-CCCCCCCCCCCCCCCCCCCC--
T ss_conf 678887----6655777676778889999875689999738----------512268-98998865576662235443--
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999981999998999977899996404788767-7778631132001133445636189999999999884414999
Q 003714 513 ASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFL-PKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPS 591 (800)
Q Consensus 513 ~a~L~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~ 591 (800)
+ + |++. ++.+.+ +...++.........+.++.|.++++...
T Consensus 296 -~--------~---------------------~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~l~~~l~~~~----- 337 (640)
T 1y8q_B 296 -A--------S---------------------DQQNEPQLGLK---DQQVLDVKSYARLFSKSIETLRVHLAEKG----- 337 (640)
T ss_dssp ---------------------------------------CCCG---GGSCCCHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred -C--------C---------------------CCCCCCCCCCC---HHHHCCHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_conf -4--------5---------------------31124335887---24434865655667999999998731014-----
Q ss_pred CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99767720003689770458999964210010477888877999782776631356678999999999999860899864
Q 003714 592 GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLE 671 (800)
Q Consensus 592 ~~~~~p~~FeKDDd~n~hidFI~aasNLRA~ny~I~~~~~~~~K~iAG~IIPAIaTTtA~VaGl~~lEl~K~l~~~~~~~ 671 (800)
++.|++||||||+ |||||+|||||||+||+||++|||++|+||||||||||||||+||||+|+|+||++++ +++
T Consensus 338 --~~~~~~FdKDDd~--h~dFV~aaaNlRA~~y~I~~~~~~~~K~iAG~IIPAIATTnAiVaGl~~lE~~Kvl~~--~~~ 411 (640)
T 1y8q_B 338 --DGAELIWDKDDPS--AMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSG--KID 411 (640)
T ss_dssp --TTCCCCCCTTCHH--HHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHTT--CGG
T ss_pred --CCCCCCCCCCCHH--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC--CHH
T ss_conf --5777661789888--9899999988899975998689999998847735411027999999999999998743--177
Q ss_pred CCCCCCCCCCCC----CCCCCCCCCCCCCCCCC-CCCEEEEEEEECCCCCHHHHHHHH-HHC-CCCEEEEEC---CCCEE
Q ss_conf 332101134456----32357999996322378-751289899929988799999999-985-992212103---98312
Q 003714 672 DYRNTFANLALP----LFSMAEPVPPKVIKHRD-MSWTVWDRWILKDNPTLRELIQWL-KDK-GLNAYSISC---GSCLL 741 (800)
Q Consensus 672 ~~rn~f~nla~p----~~~~~eP~~~~~~~~~~-~~~t~wd~~~i~~~~TL~~li~~~-~~~-~l~~~~i~~---g~~~l 741 (800)
.|||+|+|++.| ++.+++|.+|.+.|+.. ..+++|+++++. ++||++|++++ +++ |++++||+. |.++|
T Consensus 412 ~~kn~f~n~a~~~~~~~~~~~~p~~p~~~c~vc~~~~~~~~~~~~~-~~TL~~li~~~~~~~~~l~~~~is~~~~~~~~l 490 (640)
T 1y8q_B 412 QCRTIFLNKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVRLNVH-KVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTIL 490 (640)
T ss_dssp GCEEEEECSSCCTTSEEEEEEECCCCCTTCTTTSSSCEEEEEECTT-TCBHHHHHHCCCCCCTCCSSCEEEESSSSCCEE
T ss_pred HHHHHHEEECCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCEE
T ss_conf 6422531303577776785166679899975658742799999479-780999999998886199786699976998388
Q ss_pred ECCCCCCHHHCCCCCHHHH-HHHHHCCCCCCCEEEEEEEEEEECCC
Q ss_conf 3379964221026818999-88630457899612999999952499
Q 003714 742 FNSMFPRHKERMDKKVVDL-AREVAKVELPPYRRHLDVVVACEDDE 786 (800)
Q Consensus 742 Y~~~~~~~~~~l~~~l~~l-~~~~~~~~l~~~~~~l~l~v~~~d~~ 786 (800)
|+.+++++++||+++|++| ++..++..++....++.|++.+.-.+
T Consensus 491 y~~~~~~~~~~l~~~l~el~v~~~~~~~v~d~~~~~~~~i~~~~~~ 536 (640)
T 1y8q_B 491 ISSEEGETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINILHSE 536 (640)
T ss_dssp ECSSSSSSTTGGGSBGGGGTCCTTCEEEEEETTTTEEEEEEEEECS
T ss_pred EECCCHHHHHHHHCCHHHHCCCCCCEEEECCCCCCEEEEEEEEECC
T ss_conf 8536666677641838872835785898468775479999999567
No 3
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=1.00 E-value=1 Score=537.97 Aligned_cols=268 Identities=41% Similarity=0.745 Sum_probs=243.8
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999997324579999300799898773332025926774201893467665420386357898999999952211220
Q 003714 368 PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEI 447 (800)
Q Consensus 368 ~~~~~~p~ctl~~fP~~~~h~i~wa~~~f~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~p~~ 447 (800)
.-.+++|+||||+||+.++|||+|||++|+++|+..+++++.|+++| .|.+.+.+.++.+..+.|+.+++.|...+|.+
T Consensus 9 ~~~ks~P~CTlrsfP~~i~HcI~WAr~lFe~lF~~~~~~~n~~l~dp-~~~~~~~~~~~~~~~~~l~~i~~~L~~~~p~~ 87 (276)
T 1z7l_A 9 EFEKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDS-KFVERTLRLAGTQPLEVLEAVQRSLVLQRPQT 87 (276)
T ss_dssp -----CCHHHHHTCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHTTCS-HHHHHHHTSSTTHHHHHHHHHHHHHTTTCCSS
T ss_pred CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCH-HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 47998941136788997047999999999898767887888764080-77888874230146899999999986238874
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 36689999999999978999997530993200137988866999999853248999702688999999999981999998
Q 003714 448 FQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPD 527 (800)
Q Consensus 448 ~~~c~~~A~~~f~~~F~~~I~~Ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~n~~h~~fi~~~a~L~a~~~~i~~~~ 527 (800)
|++|++|||.+|+++|+++|+|||++||+|++|++|++|||||||+|+||+||.+|++|++||+++|+|+|++|||++.
T Consensus 88 ~~~c~~~Ar~~F~k~F~~~I~qLL~~fP~D~~t~~G~~fWsg~Kr~P~PL~fd~~~~~h~~fI~aaa~L~A~~~gi~~~- 166 (276)
T 1z7l_A 88 WGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGLTGS- 166 (276)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHSCTTCBCTTSCBSSCSSCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-
T ss_conf 8899999999999999789999998488421356787156789989988335987667999999999999998399977-
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCC
Q ss_conf 99997789999640478876777786311320011334456361899999999998844149999976772000368977
Q 003714 528 WTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTN 607 (800)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~p~~FeKDDd~n 607 (800)
.+.+.+.++++++.+|+|.|+++++|.++|++...++... +.+.++.|.++|++... ..+.++.|++||||||+|
T Consensus 167 --~d~~~i~~~~~~~~vp~f~p~~~~ki~~~e~~~~~~~~~~-~~~~~~~L~~~l~~~~~--~~~~~~~pl~FeKDDd~N 241 (276)
T 1z7l_A 167 --QDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASV-DDSRLEELKATLPSPDK--LPGFKMYPIDFEKDDDSN 241 (276)
T ss_dssp --CCHHHHHHHHHTCCCCCCCCCSSCCCCSSSCCC------C-CSHHHHHHHHHSCCGGG--STTCCCCCCCCCSSCTTS
T ss_pred --CCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCHHCCCC-CHHHHHHHHHHHHHHHH--CCCCCCCCCCEECCCCCC
T ss_conf --7999999997457778867765660025332201000333-49999999998523221--146667873113588865
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC
Q ss_conf 04589999642100104778888779997827766
Q 003714 608 YHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRII 642 (800)
Q Consensus 608 ~hidFI~aasNLRA~ny~I~~~~~~~~K~iAG~II 642 (800)
+|||||+|||||||+||+||++||+++|+||||||
T Consensus 242 ~hmdFItAaSNLRA~nY~I~~~dr~~~K~IAG~II 276 (276)
T 1z7l_A 242 FHMDFIVAASNLRAENYDISPADRHKSKLIAGKII 276 (276)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCCCHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
T ss_conf 28999999999899985998678999998817769
No 4
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=1.00 E-value=1 Score=479.25 Aligned_cols=359 Identities=26% Similarity=0.456 Sum_probs=296.5
Q ss_pred CCHHHHHCCCHHHHHHH-HCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 10034540489889998-52939997378338999999998136568883259834983223688754333357533108
Q 003714 194 RYDAQISVFGAKLQKKL-EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 272 (800)
Q Consensus 194 Ry~rqi~l~G~~~q~~L-~~~~V~IvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~K 272 (800)
+|...-..+|.+.|+++ ++++|+||||||+||+++++||++|| |+|+|+|+|+|+.|||+|||+|+++|||++|
T Consensus 392 ~~~~~~~~~g~~~~~~~l~~~~vlvvG~GglG~~~~~~L~~~Gv-----g~i~l~D~d~v~~snl~rq~~~~~~~vg~~K 466 (805)
T 2nvu_B 392 PFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGF-----RQIHVIDMDTIDVSNLNRQFLFRPKDIGRPK 466 (805)
T ss_dssp TTSCTTCCCCSHHHHHHHHTCCEEEECCSSHHHHHHHHHHTTTC-----CEEEEEECCBCCGGGGGTCTTCCGGGTTSBH
T ss_pred CCCCCCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCC-----CCEEEECCCEECCCCCCCCCCCCHHHCCCHH
T ss_conf 88886567798999998708969998987789999999998489-----9489987983443345546345632267829
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCCCCEEEECCCCHHHHHHHHHHCCC------------CCCCEE
Q ss_conf 99999977721998669997366687731244101104754999936897887998420123------------555489
Q 003714 273 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY------------FQKPLL 340 (800)
Q Consensus 273 a~va~~~l~~inp~i~i~~~~~~i~~~~~~~~~~~~~~~~DiVi~a~Dn~~ar~~i~~~c~~------------~~~pli 340 (800)
+++++++++++||+++|+++..++.+.+ .++++++|+||+|+||+++|+++++.|+. .++|+|
T Consensus 467 a~~~~~~l~~~np~~~v~~~~~~~~~~~-----~~~~~~~d~vv~~~d~~~~r~~in~~~~~~~~~~~g~~~~~~~~p~i 541 (805)
T 2nvu_B 467 AEVAAEFLNDRVPNCNVVPHFNKIQDFN-----DTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLI 541 (805)
T ss_dssp HHHHHHHHHHHSTTCEEEEEESCGGGSC-----HHHHHTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEE
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCH-----HHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 9999999997789977999955556517-----88974399999998997999999999999763024432202477579
Q ss_pred EECCCCCCCCEEEEECCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHH
Q ss_conf 835468656248991886444577889--999999973245799993007998987733320259267742018934676
Q 003714 341 ESGTLGAKCNTQMVIPHLTENYGASRD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYT 418 (800)
Q Consensus 341 ~sgt~G~~G~v~~~ip~~t~~y~~~~~--~~~~~~p~ctl~~fP~~~~h~i~wa~~~f~~~f~~~~~~~~~~l~~~~~~~ 418 (800)
++|+.|+.|++.+++|+.++||.|..+ |+....|+|+++++|+.++|||.||+...
T Consensus 542 ~~~~~g~~G~~~~~~p~~~~c~~c~~~~~p~~~~~~~c~~~~~~~~~~~~i~~a~~~~---------------------- 599 (805)
T 2nvu_B 542 DGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQ---------------------- 599 (805)
T ss_dssp EEEEETTEEEEEEECTTTSCCTTTSGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTH----------------------
T ss_pred EECCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH----------------------
T ss_conf 9325667326889889998760046777898777875536789999507999999864----------------------
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65420386357898999999952211220366899999999999789999975309932001379888669999998532
Q 003714 419 TSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQ 498 (800)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~~l~~~~p~~~~~c~~~A~~~f~~~F~~~I~~Ll~~~p~d~~~~~g~~fWs~~kr~P~pl~ 498 (800)
| ... + |.
T Consensus 600 -----------------------------------~-----~~~----------------------------~--~~--- 606 (805)
T 2nvu_B 600 -----------------------------------W-----PKE----------------------------Q--PF--- 606 (805)
T ss_dssp -----------------------------------H-----HHH----------------------------C--TT---
T ss_pred -----------------------------------C-----CCC----------------------------C--CC---
T ss_conf -----------------------------------3-----011----------------------------5--99---
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 48999702688999999999981999998999977899996404788767777863113200113344563618999999
Q 003714 499 FSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDL 578 (800)
Q Consensus 499 fd~~n~~h~~fi~~~a~L~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~l 578 (800)
T Consensus 607 -------------------------------------------------------------------------------- 606 (805)
T 2nvu_B 607 -------------------------------------------------------------------------------- 606 (805)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99998844149999976772000368977045899996421001047788887799978277663135667899999999
Q 003714 579 IIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCL 658 (800)
Q Consensus 579 ~~~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFI~aasNLRA~ny~I~~~~~~~~K~iAG~IIPAIaTTtA~VaGl~~l 658 (800)
..|+.||+||.. |++||++++|+||..|||+..+++.+++++|+|||||+||+|+|+|++++
T Consensus 607 ----------------~~~~~~d~~~~~--~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~i~p~i~~~~aiig~~~a~ 668 (805)
T 2nvu_B 607 ----------------GEGVPLDGDDPE--HIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCAT 668 (805)
T ss_dssp ----------------STTCCCCTTCHH--HHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHH
T ss_pred ----------------CCCCCCCCCCHH--HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf ----------------876667899789--99999999999999859997679999987535325521089999999999
Q ss_pred HHHHHHHCCC-CCCCCCCCCCCCCCC-CCCCC-CCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHC---CCCEE
Q ss_conf 9999860899-864332101134456-32357-999996322378751289899929988799999999985---99221
Q 003714 659 ELYKVLDGGH-KLEDYRNTFANLALP-LFSMA-EPVPPKVIKHRDMSWTVWDRWILKDNPTLRELIQWLKDK---GLNAY 732 (800)
Q Consensus 659 El~K~l~~~~-~~~~~rn~f~nla~p-~~~~~-eP~~~~~~~~~~~~~t~wd~~~i~~~~TL~~li~~~~~~---~l~~~ 732 (800)
|++|++.+.. ++..+. .|-.+... ...+. ++.+.|..| + +.|+++.++.+.||++|++++.++ +++.+
T Consensus 669 e~ik~l~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~C~~C----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (805)
T 2nvu_B 669 EVFKIATSAYIPLNNYL-VFNDVDGLYTYTFEAERKENCPAC----S-QLPQNIQFSPSAKLQEVLDYLTNSASLQMKSP 742 (805)
T ss_dssp HHHHHHHCSSCCCCSEE-EEECSBSCEEEEECCCCCTTCTTT----S-CCCEEEEECTTSBHHHHHHHHHHCTTTCCSSC
T ss_pred HHHHHHHCCCCCCCCEE-EECCCCCCCCCCCCCCCCCCCCEE----C-CEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999743564667327-763787742223467889999700----7-64589998886719999999986214474364
Q ss_pred EEEC----CCCEEECCCCCC----HHHCCCCCHHHHH
Q ss_conf 2103----983123379964----2210268189998
Q 003714 733 SISC----GSCLLFNSMFPR----HKERMDKKVVDLA 761 (800)
Q Consensus 733 ~i~~----g~~~lY~~~~~~----~~~~l~~~l~~l~ 761 (800)
||+. |+++||++++|+ +++||+++|+||.
T Consensus 743 ~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~ 779 (805)
T 2nvu_B 743 AITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELG 779 (805)
T ss_dssp EEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTT
T ss_pred EEEEECCCCCCEEEECCCCCHHHHHHHHHCCCHHHCC
T ss_conf 6777706898689962763201455765128998819
No 5
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=1.00 E-value=1 Score=470.24 Aligned_cols=360 Identities=27% Similarity=0.473 Sum_probs=293.1
Q ss_pred CCCHHHHHCCCHH-------------HHH-HHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 7100345404898-------------899-98529399973783389999999981365688832598349832236887
Q 003714 193 SRYDAQISVFGAK-------------LQK-KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLS 258 (800)
Q Consensus 193 ~Ry~rqi~l~G~~-------------~q~-~L~~~~V~IvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLn 258 (800)
.||+++..+|+.. .++ .|++++|+|+|+||+||+++++||++|| |+|+|+|+|+|+.|||+
T Consensus 7 ~r~~~vntl~~~~g~~~g~gf~~g~e~~~~~L~~~~VlvvG~GGlGs~va~~La~aGv-----g~i~ivD~D~Ve~sNL~ 81 (434)
T 1tt5_B 7 GRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGF-----RQIHVIDMDTIDVSNLN 81 (434)
T ss_dssp TTTHHHHHHHHSCCSSCCTTCCCCSSHHHHHHHTCCEEEECSSTHHHHHHHHHHHTTC-----CCEEEEECCBCCGGGTT
T ss_pred HHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCC-----CEEEEECCCEECHHCCC
T ss_conf 6610215997679850466544488899988659979998968999999999998699-----97999819880631067
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCCCCEEEECCCCHHHHHHHHHHCCCC---
Q ss_conf 54333357533108999999777219986699973666877312441011047549999368978879984201235---
Q 003714 259 RQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF--- 335 (800)
Q Consensus 259 RQflf~~~diG~~Ka~va~~~l~~inp~i~i~~~~~~i~~~~~~~~~~~~~~~~DiVi~a~Dn~~ar~~i~~~c~~~--- 335 (800)
|||+|+++|||++|+++++++++++||+++|+++..++...+ .++++++|+|++|+||+++|+++++.|+.+
T Consensus 82 RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~-----~~~~~~~DlVi~~~Dn~~~R~~in~~c~~~~~~ 156 (434)
T 1tt5_B 82 RQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFN-----DTFYRQFHIIVCGLDSIIARRWINGMLISLLNY 156 (434)
T ss_dssp TCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEESCGGGBC-----HHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCB
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHH-----HHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 773788367683999999999984689977999945555136-----887457999999889989999999999985412
Q ss_pred ---------CCCEEEECCCCCCCCEEEEECCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf ---------55489835468656248991886444577889--9999999732457999930079989877333202592
Q 003714 336 ---------QKPLLESGTLGAKCNTQMVIPHLTENYGASRD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP 404 (800)
Q Consensus 336 ---------~~pli~sgt~G~~G~v~~~ip~~t~~y~~~~~--~~~~~~p~ctl~~fP~~~~h~i~wa~~~f~~~f~~~~ 404 (800)
++|+|++|+.|+.|++.+++|+.++||.|..+ |++...|+|+++++|+.++|||.||+..
T Consensus 157 ~~g~~~~~~~iPli~~~~~g~~G~v~v~~p~~t~Cy~C~~~~~p~~~~~p~Ct~~~~p~~~~h~i~~a~~i--------- 227 (434)
T 1tt5_B 157 EDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRML--------- 227 (434)
T ss_dssp SSSCBCGGGCCCEEEEEEETTEEEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHT---------
T ss_pred CCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH---------
T ss_conf 45421001498479810256303799988899897132567789867776421246776606889999887---------
Q ss_pred HHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 67742018934676654203863578989999999522112203668999999999997899999753099320013798
Q 003714 405 AEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGA 484 (800)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~p~~~~~c~~~A~~~f~~~F~~~I~~Ll~~~p~d~~~~~g~ 484 (800)
.| ++
T Consensus 228 ------------------------------------------------~~-----~~----------------------- 231 (434)
T 1tt5_B 228 ------------------------------------------------QW-----PK----------------------- 231 (434)
T ss_dssp ------------------------------------------------HH-----HH-----------------------
T ss_pred ------------------------------------------------HH-----HH-----------------------
T ss_conf ------------------------------------------------77-----65-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88669999998532489997026889999999999819999989999778999964047887677778631132001133
Q 003714 485 PFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTL 564 (800)
Q Consensus 485 ~fWs~~kr~P~pl~fd~~n~~h~~fi~~~a~L~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 564 (800)
..|.
T Consensus 232 -------~~~~--------------------------------------------------------------------- 235 (434)
T 1tt5_B 232 -------EQPF--------------------------------------------------------------------- 235 (434)
T ss_dssp -------SCTT---------------------------------------------------------------------
T ss_pred -------HCCC---------------------------------------------------------------------
T ss_conf -------2356---------------------------------------------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCH
Q ss_conf 44563618999999999988441499999767720003689770458999964210010477888877999782776631
Q 003714 565 STASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPA 644 (800)
Q Consensus 565 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFI~aasNLRA~ny~I~~~~~~~~K~iAG~IIPA 644 (800)
..|+.||+||+. |++||++++|+||..|||+..+++.+++++|+||||
T Consensus 236 ------------------------------~~~~~~d~d~~~--~~~~v~~~a~~~~~~~gi~~~~~~~~~gv~~~iipa 283 (434)
T 1tt5_B 236 ------------------------------GEGVPLDGDDPE--HIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPA 283 (434)
T ss_dssp ------------------------------CTTCCCCTTCHH--HHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCC
T ss_pred ------------------------------CCCCCCCCCCHH--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
T ss_conf ------------------------------553345777477--899999999888987298866899998676146764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCC-CCC-CCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHH
Q ss_conf 356678999999999999860899-86433210113445632-357-999996322378751289899929988799999
Q 003714 645 IATSTAMATGLVCLELYKVLDGGH-KLEDYRNTFANLALPLF-SMA-EPVPPKVIKHRDMSWTVWDRWILKDNPTLRELI 721 (800)
Q Consensus 645 IaTTtA~VaGl~~lEl~K~l~~~~-~~~~~rn~f~nla~p~~-~~~-eP~~~~~~~~~~~~~t~wd~~~i~~~~TL~~li 721 (800)
||||+|+|+|++++|++|++.+.. ++..+. .|-.+....+ .+. ++.+.+..| + +.|+++.++.+.||++|+
T Consensus 284 ia~t~aiig~l~a~EaiK~l~g~~~~l~~~l-~~d~~~~~~~~~~~~~~~~~C~vC--~---~~~~~~~~~~~~tl~~~~ 357 (434)
T 1tt5_B 284 VASTNAVIAAVCATEVFKIATSAYIPLNNYL-VFNDVDGLYTYTFEAERKENCPAC--S---QLPQNIQFSPSAKLQEVL 357 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCSCCCCSEE-EEECSBSCEEEEECCCCCTTCTTT--C---SSCBCCCC-----CTTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEE-EEECCCCCEEEEEECCCCCCCCCC--C---CCCCEEEECCCCCHHHHH
T ss_conf 3427999999999999999838986557649-997377864678723679998844--8---887269988876389999
Q ss_pred HHHHHC---CCCEEEEEC----CCCEEECCCCC----CHHHCCCCCHHHHH
Q ss_conf 999985---992212103----98312337996----42210268189998
Q 003714 722 QWLKDK---GLNAYSISC----GSCLLFNSMFP----RHKERMDKKVVDLA 761 (800)
Q Consensus 722 ~~~~~~---~l~~~~i~~----g~~~lY~~~~~----~~~~~l~~~l~~l~ 761 (800)
+++.++ +++.+||+. |+++||++++| ++++||+++|.||.
T Consensus 358 ~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~ 408 (434)
T 1tt5_B 358 DYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELG 408 (434)
T ss_dssp HHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----C
T ss_pred HHHHCCCCCCEECCEEEEECCCCCCEEEECCCCCHHHHHHHHHCCCHHHCC
T ss_conf 998566765317557888806898589962774211455766138998818
No 6
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=1.00 E-value=1 Score=311.69 Aligned_cols=190 Identities=22% Similarity=0.342 Sum_probs=171.8
Q ss_pred CCCHHHHHCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 71003454048988999852939997378338999999998136568883259834983223688754333357533108
Q 003714 193 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 272 (800)
Q Consensus 193 ~Ry~rqi~l~G~~~q~~L~~~~V~IvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~~K 272 (800)
.||+||+++||.++|++|++++|+|||+||+||++++|||++|| |+|+|+|+|+|+.|||+|||+++++|||++|
T Consensus 13 ~rY~Rqi~l~G~~~q~~L~~~~VlvvG~GGlGseiak~La~aGV-----g~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~K 87 (531)
T 1tt5_A 13 QKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 87 (531)
T ss_dssp HHTHHHHHHHHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTTTC-----SEEEEECCCBBCHHHHHHCTTCCGGGBTSBH
T ss_pred HHHHHHHHHCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCC-----CEEEEEECCEECHHHCCCCCCCCHHHCCCHH
T ss_conf 77667887629999999846969998768899999999998289-----8599994989223111567057856658689
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCEE
Q ss_conf 99999977721998669997366687731244101104754999936897887998420123555489835468656248
Q 003714 273 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQ 352 (800)
Q Consensus 273 a~va~~~l~~inp~i~i~~~~~~i~~~~~~~~~~~~~~~~DiVi~a~Dn~~ar~~i~~~c~~~~~pli~sgt~G~~G~v~ 352 (800)
|++++++++++||++++.++...+....+ ...++++++|+||+|+|+..+|.++++.|+.+++|+|++|+.|+.|++.
T Consensus 88 a~~a~~~l~~lNp~v~v~~~~~~~~~~~~--~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~~~~G~~G~v~ 165 (531)
T 1tt5_A 88 AEAAMEFLQELNSDVSGSFVEESPENLLD--NDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMR 165 (531)
T ss_dssp HHHHHHHHHTTCTTSBCCEESSCHHHHHH--SCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTTCCEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHH--HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEEE
T ss_conf 99999999986899769995787222545--0687851799899927999999999999998399789997547738999
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9918864445778899999999732457999930079989
Q 003714 353 MVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWA 392 (800)
Q Consensus 353 ~~ip~~t~~y~~~~~~~~~~~p~ctl~~fP~~~~h~i~wa 392 (800)
+++|. ..++++. +++...++|++..+|..++||-.++
T Consensus 166 ~~~p~-~~~~d~~--~~~~~~~lr~~~p~P~~~~~~~~~~ 202 (531)
T 1tt5_A 166 IIIKE-HPVIESH--PDNALEDLRLDKPFPELREHFQSYD 202 (531)
T ss_dssp EECSC-EEESCCC--CSSCCCCCCSSSCCHHHHHHHHTCC
T ss_pred EECCC-CEECCCC--CCCCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 98288-4121578--8878986000379998545542267
No 7
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=1.00 E-value=1 Score=296.46 Aligned_cols=171 Identities=23% Similarity=0.378 Sum_probs=157.0
Q ss_pred CCCCCCCCCCCCCCHHHHHCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 99956778844710034540489889998529399973783389999999981365688832598349832236887543
Q 003714 182 PLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQF 261 (800)
Q Consensus 182 ~l~~~~~~~~~~Ry~rqi~l~G~~~q~~L~~~~V~IvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQf 261 (800)
.+++++. .||+||+++||.++|++|++++|+|+|+||+||++++||+++|| |+|+|+|+|+|+.+||+|||
T Consensus 10 ~l~~~~~----~rY~Rq~~l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gv-----g~itlvD~d~V~~sNL~rq~ 80 (346)
T 1y8q_A 10 GISEEEA----AQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGV-----KGLTMLDHEQVTPEDPGAQF 80 (346)
T ss_dssp CCCHHHH----HHHHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTC-----SEEEEECCCBCCSSCGGGCT
T ss_pred CCCHHHH----HHHHHHHHHHCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCC-----CEEEEEECCCCCHHHCCCCC
T ss_conf 6898999----88878888619999999848959998778899999999998599-----87999989781253188777
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 33357533108999999777219986699973666877312441011047549999368978879984201235554898
Q 003714 262 LFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLE 341 (800)
Q Consensus 262 lf~~~diG~~Ka~va~~~l~~inp~i~i~~~~~~i~~~~~~~~~~~~~~~~DiVi~a~Dn~~ar~~i~~~c~~~~~pli~ 341 (800)
+++++|||++|+++++++++++||+++++++...+... ..++++++|+||+|+|+.++|.++++.|+.+++|+|.
T Consensus 81 ~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~~-----~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~ 155 (346)
T 1y8q_A 81 LIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKK-----PESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFT 155 (346)
T ss_dssp TSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSCGGGC-----CHHHHTTCSEEEEESCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCC-----HHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 65520186889999999999478980899993445713-----5877458999998689999999999999984997899
Q ss_pred ECCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 35468656248991886444577889
Q 003714 342 SGTLGAKCNTQMVIPHLTENYGASRD 367 (800)
Q Consensus 342 sgt~G~~G~v~~~ip~~t~~y~~~~~ 367 (800)
+++.|+.|++.+.++ ...|+.|..+
T Consensus 156 ~~~~G~~G~v~~d~~-~~~~~~~~~~ 180 (346)
T 1y8q_A 156 GDVFGYHGYTFANLG-EHEFVEEKTK 180 (346)
T ss_dssp EEEEBTEEEEEEECS-EEEEEEECC-
T ss_pred EEECCCEEEEEEECC-CCCEEECCCC
T ss_conf 960664899999459-8887974898
No 8
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=285.84 Aligned_cols=186 Identities=22% Similarity=0.314 Sum_probs=160.9
Q ss_pred CCCCCHHHHHCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44710034540489889998529399973783389999999981365688832598349832236887543333575331
Q 003714 191 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 270 (800)
Q Consensus 191 ~~~Ry~rqi~l~G~~~q~~L~~~~V~IvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~ 270 (800)
...||+||+++||.++|++|++++|+|+|+||+||++++||+++|| |+|+|+|.|+|+.+||+|||+++++|||+
T Consensus 6 d~~rY~Rqi~l~G~~~q~rL~~s~VlIvG~GGlGseiak~La~aGV-----g~itlvD~D~V~~sNL~RQ~l~~~~dvG~ 80 (1015)
T 3cmm_A 6 DESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGV-----KSMTVFDPEPVQLADLSTQFFLTEKDIGQ 80 (1015)
T ss_dssp CHHHHHHHHHHSCHHHHHHHTTCEEEEECCSHHHHHHHHHHHHHCC-----SEEEEECCSBCCGGGGGTCTTCCGGGTTS
T ss_pred HHHHCCCHHHHCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCC-----CEEEEECCCEECHHHHCCCCCCCHHHCCH
T ss_conf 6676233375359999998725979998878689999999998189-----76999669875163303560267555380
Q ss_pred CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCCCCEEEECCC-CHHHHHHHHHHCCCCCCCEEEECCCCCCC
Q ss_conf 08999999777219986699973666877312441011047549999368-97887998420123555489835468656
Q 003714 271 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQKPLLESGTLGAKC 349 (800)
Q Consensus 271 ~Ka~va~~~l~~inp~i~i~~~~~~i~~~~~~~~~~~~~~~~DiVi~a~D-n~~ar~~i~~~c~~~~~pli~sgt~G~~G 349 (800)
+|+++++++++++||+++|+++...+. +++++++|+||+|.| +.++|..+++.|+..++|+|.+++.|+.|
T Consensus 81 ~Ka~a~~~~L~~lNP~v~v~~~~~~l~--------~~~l~~~DvVv~~~d~~~~~r~~ln~~c~~~~iplI~~~~~G~~G 152 (1015)
T 3cmm_A 81 KRGDVTRAKLAELNAYVPVNVLDSLDD--------VTQLSQFQVVVATDTVSLEDKVKINEFCHSSGIRFISSETRGLFG 152 (1015)
T ss_dssp BHHHHHHHHHTTSCTTSCEEECCCCCC--------STTGGGCSEEEECTTSCHHHHHHHHHHHHHHTCEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCC--------HHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCEE
T ss_conf 999999999998789975999627789--------889814989999378997999999999997089889997525679
Q ss_pred CEEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2489918864445778899--99999973245799993007998987
Q 003714 350 NTQMVIPHLTENYGASRDP--PEKQAPMCTVHSFPHNIDHCLTWARS 394 (800)
Q Consensus 350 ~v~~~ip~~t~~y~~~~~~--~~~~~p~ctl~~fP~~~~h~i~wa~~ 394 (800)
++.+. ..+||.|.... +....+.|++ +-| .+.||+.+.+.
T Consensus 153 ~v~~d---~~~~~~c~~~~~~~p~~~~i~~i-~~p-~~v~~l~~~~h 194 (1015)
T 3cmm_A 153 NTFVD---LGDEFTVLDPTGEEPRTGMVSDI-EPD-GTVTMLDDNRH 194 (1015)
T ss_dssp EEEEE---CCSCEEESBSSCCCCCEEEEEEE-CTT-CEEEESTTCCC
T ss_pred EEEEC---CCCCEEEEECCCCCCCCCCCCCC-CCC-CEEEEEECCCC
T ss_conf 99965---89856996179999865444578-998-44676402114
No 9
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=1.00 E-value=1 Score=278.41 Aligned_cols=167 Identities=24% Similarity=0.401 Sum_probs=152.2
Q ss_pred CCCCCHHHHHC--CCH-HHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 44710034540--489-889998529399973783389999999981365688832598349832236887543333575
Q 003714 191 INSRYDAQISV--FGA-KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWN 267 (800)
Q Consensus 191 ~~~Ry~rqi~l--~G~-~~q~~L~~~~V~IvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~d 267 (800)
.+.-|+|||.| ||. ++|++|++++|+|||+||+||+++++||++|| |+|+|+|+|+|+.|||+||+ |+++|
T Consensus 12 ~~~~y~r~i~L~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGV-----G~i~lvD~D~Ve~sNL~Rq~-~~~~d 85 (292)
T 3h8v_A 12 SGLVPRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGI-----GKLLLFDYDKVELANMNRLF-FQPHQ 85 (292)
T ss_dssp --------------------CGGGGCEEEEECCSHHHHHHHHHHHHHTC-----SEEEEECCCBC-------------CC
T ss_pred CCCCCHHHHCCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCC-----CEEEEECCCCCCHHHCCCCC-CCHHH
T ss_conf 8998137550613273889998838959998858999999999998599-----88999899856754346344-89556
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHC-----------CCCCEEEECCCCHHHHHHHHHHCCCCC
Q ss_conf 331089999997772199866999736668773124410110-----------475499993689788799842012355
Q 003714 268 IGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFW-----------ENITCVINALDNVNARLYVDQRCLYFQ 336 (800)
Q Consensus 268 iG~~Ka~va~~~l~~inp~i~i~~~~~~i~~~~~~~~~~~~~-----------~~~DiVi~a~Dn~~ar~~i~~~c~~~~ 336 (800)
||++|+++++++++++||+++|+++..+++.... + +.|+ +++|+|++|+||+++|+++++.|+.++
T Consensus 86 iG~~Ka~aa~~~L~~iNP~v~v~~~~~~l~~~~~--~-~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~~~ 162 (292)
T 3h8v_A 86 AGLSKVQAAEHTLRNINPDVLFEVHNYNITTVEN--F-QHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELG 162 (292)
T ss_dssp TTSBHHHHHHHHHHHHCTTSEEEEECCCTTSHHH--H-HHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH--H-HHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 6842999999999964898479996156781777--9-998643010000347888889989761334259999999819
Q ss_pred CCEEEECCCC--CCCCEEEEECCCCCCCCCCC
Q ss_conf 5489835468--65624899188644457788
Q 003714 337 KPLLESGTLG--AKCNTQMVIPHLTENYGASR 366 (800)
Q Consensus 337 ~pli~sgt~G--~~G~v~~~ip~~t~~y~~~~ 366 (800)
+|++++|+.| +.|++.+++|+.++||.|..
T Consensus 163 ~Pli~~gv~~~~~~Gqv~~~~pg~t~Cy~Cl~ 194 (292)
T 3h8v_A 163 QTWMESGVSENAVSGHIQLIIPGESACFACAP 194 (292)
T ss_dssp CCEEEEEECTTSSEEEEEEECTTTSCCTTSSS
T ss_pred CCEEEEEEECCEEEEEEEEECCCCCCCHHHCC
T ss_conf 98899456445469999998789998776658
No 10
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=1.00 E-value=1 Score=271.72 Aligned_cols=165 Identities=31% Similarity=0.467 Sum_probs=154.8
Q ss_pred CCCHHHHHC--CCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 710034540--489889998529399973783389999999981365688832598349832236887543333575331
Q 003714 193 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 270 (800)
Q Consensus 193 ~Ry~rqi~l--~G~~~q~~L~~~~V~IvG~GgiG~evlknLa~~Gv~~~~~g~i~ivD~D~Ie~sNLnRQflf~~~diG~ 270 (800)
+||+||+++ ||.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|.|.|+.|||+||++|+++|||+
T Consensus 7 ~ry~Rq~~l~~~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gv-----g~i~lvD~d~v~~sNL~Rq~l~~~~diG~ 81 (251)
T 1zud_1 7 MRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGV-----GTLVLADDDDVHLSNLQRQILFTTEDIDR 81 (251)
T ss_dssp HHTHHHHTSTTTHHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTC-----SEEEEECCCBCCGGGTTTCTTCCGGGTTS
T ss_pred HHHHHHCCHHHCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCC-----CEEEEEECCCCCCCCCCCCCCCCHHHCCC
T ss_conf 7755000501159999999855969999448899999999998589-----86999809996541578780278456788
Q ss_pred CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCC
Q ss_conf 08999999777219986699973666877312441011047549999368978879984201235554898354686562
Q 003714 271 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 350 (800)
Q Consensus 271 ~Ka~va~~~l~~inp~i~i~~~~~~i~~~~~~~~~~~~~~~~DiVi~a~Dn~~ar~~i~~~c~~~~~pli~sgt~G~~G~ 350 (800)
+|+++++++++++||+++++.+...+..++. .++++++|+||+|+|+.++|..+++.|+..++|+|.++..|+.|+
T Consensus 82 ~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~----~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~ 157 (251)
T 1zud_1 82 PKSQVSQQRLTQLNPDIQLTALQQRLTGEAL----KDAVARADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQ 157 (251)
T ss_dssp BHHHHHHHHHHHHCTTSEEEEECSCCCHHHH----HHHHHHCSEEEECCSSHHHHHHHHHHHHHTTCCEEEEEEEBTEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCHHHH----HHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCEE
T ss_conf 8999999999987899779999522797779----999736999999789989999999999980998999843336137
Q ss_pred EEEEECCC-CCCCCCCC
Q ss_conf 48991886-44457788
Q 003714 351 TQMVIPHL-TENYGASR 366 (800)
Q Consensus 351 v~~~ip~~-t~~y~~~~ 366 (800)
+.++.|+. ++||.|..
T Consensus 158 v~~~~p~~~~~c~~cl~ 174 (251)
T 1zud_1 158 LMVLTPPWEQGCYRCLW 174 (251)
T ss_dssp EEEECTTCTTCCHHHHC
T ss_pred EEEECCCCCCCCEEEEC
T ss_conf 99982699998577768
Done!