Query 003715
Match_columns 800
No_of_seqs 401 out of 2288
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:38:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2012 Ubiquitin activating e 100.0 2E-212 5E-217 1765.7 57.9 789 1-799 221-1013(1013)
2 TIGR01408 Ube1 ubiquitin-activ 100.0 4E-192 8E-197 1724.7 75.7 796 1-800 210-1008(1008)
3 cd01490 Ube1_repeat2 Ubiquitin 100.0 5E-122 1E-126 1021.9 41.7 430 214-753 1-435 (435)
4 KOG2013 SMT3/SUMO-activating c 100.0 1.6E-81 3.6E-86 674.3 26.1 477 204-761 4-499 (603)
5 cd01489 Uba2_SUMO Ubiquitin ac 100.0 8.8E-77 1.9E-81 638.6 27.4 306 214-698 1-310 (312)
6 cd01484 E1-2_like Ubiquitin ac 100.0 1.3E-63 2.8E-68 518.3 22.5 176 214-396 1-176 (234)
7 cd01488 Uba3_RUB Ubiquitin act 100.0 2.1E-58 4.6E-63 491.2 20.3 249 214-668 1-259 (291)
8 KOG2015 NEDD8-activating compl 100.0 4.9E-58 1.1E-62 472.8 21.6 345 203-760 31-398 (422)
9 PRK08223 hypothetical protein; 100.0 6.5E-37 1.4E-41 324.4 16.2 182 191-382 6-202 (287)
10 TIGR02356 adenyl_thiF thiazole 100.0 8E-37 1.7E-41 312.9 14.7 175 194-377 1-178 (202)
11 PRK05690 molybdopterin biosynt 100.0 1.7E-36 3.7E-41 319.0 14.5 171 183-366 5-178 (245)
12 cd00757 ThiF_MoeB_HesA_family 100.0 5E-36 1.1E-40 312.8 15.4 164 194-366 1-166 (228)
13 PRK07411 hypothetical protein; 100.0 7E-36 1.5E-40 334.1 14.8 183 182-377 10-196 (390)
14 PRK08328 hypothetical protein; 100.0 6.9E-36 1.5E-40 311.9 13.0 165 193-366 8-173 (231)
15 PRK05597 molybdopterin biosynt 100.0 3.1E-35 6.7E-40 325.2 14.4 176 193-377 7-186 (355)
16 cd01492 Aos1_SUMO Ubiquitin ac 100.0 7.3E-35 1.6E-39 297.0 14.3 152 193-354 2-153 (197)
17 TIGR02355 moeB molybdopterin s 100.0 1.3E-34 2.7E-39 303.7 15.6 165 193-366 3-170 (240)
18 cd01493 APPBP1_RUB Ubiquitin a 100.0 3E-33 6.5E-38 313.5 26.3 167 193-367 1-167 (425)
19 cd01491 Ube1_repeat1 Ubiquitin 100.0 1.1E-34 2.3E-39 309.2 13.1 187 194-394 1-187 (286)
20 PRK07878 molybdopterin biosynt 100.0 2.1E-34 4.6E-39 322.8 15.6 171 182-365 14-190 (392)
21 PRK05600 thiamine biosynthesis 100.0 1.7E-34 3.6E-39 320.1 14.3 181 183-376 14-201 (370)
22 cd01485 E1-1_like Ubiquitin ac 100.0 3.1E-34 6.8E-39 292.6 13.6 155 194-355 1-157 (198)
23 PRK12475 thiamine/molybdopteri 100.0 2.5E-33 5.4E-38 307.5 15.5 165 193-366 3-171 (338)
24 PRK07688 thiamine/molybdopteri 100.0 4.4E-33 9.5E-38 305.7 15.1 166 192-366 2-171 (339)
25 PF09358 UBA_e1_C: Ubiquitin-a 100.0 7.4E-33 1.6E-37 260.5 6.3 123 673-795 1-125 (125)
26 PRK08762 molybdopterin biosynt 100.0 9.7E-32 2.1E-36 300.4 15.7 176 193-377 114-297 (376)
27 COG0476 ThiF Dinucleotide-util 100.0 9.2E-32 2E-36 285.3 13.9 171 184-367 4-177 (254)
28 KOG2017 Molybdopterin synthase 100.0 1E-32 2.2E-37 288.4 6.4 176 181-369 37-215 (427)
29 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 2.7E-31 5.8E-36 276.8 12.7 162 210-380 9-194 (244)
30 PRK14851 hypothetical protein; 100.0 4.7E-31 1E-35 310.7 15.5 166 192-367 23-190 (679)
31 PRK14852 hypothetical protein; 100.0 8E-31 1.7E-35 311.9 15.5 167 191-367 311-479 (989)
32 PRK15116 sulfur acceptor prote 100.0 4.6E-30 1E-34 271.3 13.5 162 193-363 11-174 (268)
33 PRK07877 hypothetical protein; 100.0 5.2E-29 1.1E-33 293.8 14.5 183 167-365 65-251 (722)
34 cd00755 YgdL_like Family of ac 100.0 1.7E-28 3.6E-33 255.3 14.6 155 202-364 1-156 (231)
35 PRK08644 thiamine biosynthesis 100.0 2.2E-28 4.7E-33 252.1 14.6 155 193-357 9-164 (212)
36 PF00899 ThiF: ThiF family; I 100.0 2.5E-28 5.5E-33 234.4 12.7 134 211-353 1-134 (135)
37 TIGR01408 Ube1 ubiquitin-activ 100.0 2.3E-28 5E-33 297.9 14.8 152 192-356 4-157 (1008)
38 cd01483 E1_enzyme_family Super 99.9 6.6E-27 1.4E-31 226.6 13.2 133 214-355 1-133 (143)
39 TIGR01381 E1_like_apg7 E1-like 99.9 7.8E-27 1.7E-31 267.1 15.8 145 204-354 330-490 (664)
40 COG1179 Dinucleotide-utilizing 99.9 5.2E-27 1.1E-31 237.5 11.1 149 192-348 10-158 (263)
41 TIGR03603 cyclo_dehy_ocin bact 99.9 2.8E-27 6.1E-32 257.3 9.2 156 182-365 46-207 (318)
42 cd01486 Apg7 Apg7 is an E1-lik 99.9 1.3E-25 2.8E-30 238.1 14.3 133 214-353 1-149 (307)
43 cd01487 E1_ThiF_like E1_ThiF_l 99.9 1.5E-25 3.3E-30 224.3 13.7 142 214-365 1-145 (174)
44 PTZ00245 ubiquitin activating 99.9 2.1E-25 4.6E-30 227.9 10.8 114 193-322 7-120 (287)
45 TIGR02354 thiF_fam2 thiamine b 99.9 2E-24 4.3E-29 220.7 15.1 155 198-364 7-167 (200)
46 KOG2014 SMT3/SUMO-activating c 99.9 3.9E-25 8.3E-30 228.9 9.1 160 182-355 5-164 (331)
47 KOG2016 NEDD8-activating compl 99.9 1.4E-24 3.1E-29 233.5 11.9 180 192-378 7-189 (523)
48 PRK06153 hypothetical protein; 99.9 1.7E-23 3.8E-28 228.3 12.7 130 204-345 168-300 (393)
49 cd01491 Ube1_repeat1 Ubiquitin 99.9 7.6E-24 1.6E-28 226.1 7.2 83 1-181 203-285 (286)
50 PF02134 UBACT: Repeat in ubiq 99.9 9.2E-23 2E-27 171.3 5.4 67 599-667 1-67 (67)
51 KOG2336 Molybdopterin biosynth 99.9 1.4E-21 3.1E-26 199.3 10.7 186 193-385 60-267 (422)
52 KOG2012 Ubiquitin activating e 99.8 1.1E-19 2.5E-24 207.6 11.5 148 193-353 18-165 (1013)
53 KOG2018 Predicted dinucleotide 99.8 1.1E-19 2.4E-24 188.3 9.8 150 193-350 55-204 (430)
54 KOG2014 SMT3/SUMO-activating c 99.8 8.7E-19 1.9E-23 182.0 7.9 129 42-178 194-322 (331)
55 KOG2016 NEDD8-activating compl 99.6 7.6E-16 1.7E-20 166.6 10.8 131 45-177 382-516 (523)
56 PF10585 UBA_e1_thiolCys: Ubiq 99.5 2.3E-15 5.1E-20 115.7 0.5 45 357-401 1-45 (45)
57 TIGR03693 ocin_ThiF_like putat 99.5 1.4E-13 2.9E-18 157.4 9.4 146 193-364 104-260 (637)
58 KOG2337 Ubiquitin activating E 99.4 1E-12 2.2E-17 144.8 8.1 139 205-349 333-487 (669)
59 cd01493 APPBP1_RUB Ubiquitin a 99.4 2.3E-12 4.9E-17 145.5 11.1 104 73-177 286-420 (425)
60 PF02134 UBACT: Repeat in ubiq 98.3 2.3E-07 5E-12 78.2 1.9 50 498-552 1-50 (67)
61 PF08825 E2_bind: E2 binding d 97.8 2.1E-05 4.7E-10 69.1 4.4 55 709-763 1-62 (84)
62 cd01490 Ube1_repeat2 Ubiquitin 97.6 0.00013 2.9E-09 82.8 8.5 32 595-628 245-276 (435)
63 TIGR03882 cyclo_dehyd_2 bacter 97.4 0.00018 3.9E-09 73.6 4.5 94 203-364 96-192 (193)
64 COG1748 LYS9 Saccharopine dehy 97.3 0.00067 1.5E-08 76.0 8.3 100 213-346 2-102 (389)
65 PRK12549 shikimate 5-dehydroge 97.1 0.0011 2.4E-08 71.9 8.0 76 210-319 125-200 (284)
66 COG4015 Predicted dinucleotide 97.1 0.0015 3.2E-08 63.4 7.3 125 213-350 19-146 (217)
67 PF01488 Shikimate_DH: Shikima 97.0 0.0013 2.9E-08 63.2 6.4 78 209-322 9-86 (135)
68 PRK06718 precorrin-2 dehydroge 96.9 0.0037 8E-08 64.4 9.4 91 209-339 7-97 (202)
69 TIGR01470 cysG_Nterm siroheme 96.6 0.0076 1.7E-07 62.3 8.4 95 210-343 7-101 (205)
70 PRK06719 precorrin-2 dehydroge 96.5 0.012 2.6E-07 58.2 9.1 85 209-335 10-94 (157)
71 PF13241 NAD_binding_7: Putati 96.5 0.0033 7.2E-08 57.6 4.5 88 209-342 4-91 (103)
72 PRK05562 precorrin-2 dehydroge 96.0 0.024 5.1E-07 59.2 8.3 96 209-343 22-117 (223)
73 PF03435 Saccharop_dh: Sacchar 95.8 0.015 3.3E-07 65.7 6.6 97 215-342 1-97 (386)
74 PRK07819 3-hydroxybutyryl-CoA 95.6 0.027 5.8E-07 61.2 7.1 167 213-404 6-182 (286)
75 PRK14027 quinate/shikimate deh 95.4 0.034 7.3E-07 60.4 6.8 78 210-319 125-202 (283)
76 TIGR01809 Shik-DH-AROM shikima 95.1 0.035 7.6E-07 60.2 6.2 34 210-248 123-156 (282)
77 cd01492 Aos1_SUMO Ubiquitin ac 95.1 0.014 3.1E-07 59.9 2.8 37 140-176 155-191 (197)
78 PRK12548 shikimate 5-dehydroge 95.1 0.054 1.2E-06 59.0 7.3 84 210-319 124-207 (289)
79 PRK00258 aroE shikimate 5-dehy 94.6 0.073 1.6E-06 57.6 6.8 35 209-248 120-154 (278)
80 PRK07066 3-hydroxybutyryl-CoA 94.5 0.12 2.6E-06 57.1 8.3 166 213-404 8-179 (321)
81 COG0373 HemA Glutamyl-tRNA red 94.5 0.043 9.3E-07 62.1 4.9 76 209-323 175-250 (414)
82 PF14732 UAE_UbL: Ubiquitin/SU 94.5 0.02 4.3E-07 50.9 1.7 49 713-761 7-57 (87)
83 PF05237 MoeZ_MoeB: MoeZ/MoeB 94.4 0.027 5.8E-07 49.7 2.4 40 137-176 23-63 (84)
84 PRK12749 quinate/shikimate deh 94.4 0.083 1.8E-06 57.5 6.6 52 210-282 122-173 (288)
85 PRK13940 glutamyl-tRNA reducta 94.3 0.064 1.4E-06 61.3 5.7 76 209-322 178-253 (414)
86 cd01485 E1-1_like Ubiquitin ac 94.2 0.031 6.7E-07 57.4 2.7 36 142-177 158-193 (198)
87 PRK14106 murD UDP-N-acetylmura 94.1 0.097 2.1E-06 60.3 6.9 36 210-251 3-38 (450)
88 COG0569 TrkA K+ transport syst 94.1 0.19 4.2E-06 52.6 8.5 98 213-343 1-99 (225)
89 PF00070 Pyr_redox: Pyridine n 94.1 0.052 1.1E-06 46.9 3.5 30 214-249 1-30 (80)
90 PF02737 3HCDH_N: 3-hydroxyacy 94.0 0.046 9.9E-07 55.3 3.6 161 214-399 1-170 (180)
91 COG0169 AroE Shikimate 5-dehyd 94.0 0.12 2.5E-06 56.1 6.9 74 211-319 125-198 (283)
92 COG1648 CysG Siroheme synthase 94.0 0.1 2.2E-06 54.1 6.1 96 209-343 9-104 (210)
93 PRK05808 3-hydroxybutyryl-CoA 94.0 0.2 4.3E-06 54.2 8.6 32 213-250 4-35 (282)
94 cd01065 NAD_bind_Shikimate_DH 93.9 0.1 2.3E-06 50.6 5.7 35 210-249 17-51 (155)
95 PF02826 2-Hacid_dh_C: D-isome 93.9 0.034 7.5E-07 56.0 2.3 39 208-252 32-70 (178)
96 cd01489 Uba2_SUMO Ubiquitin ac 93.7 0.083 1.8E-06 58.0 5.1 42 497-542 210-251 (312)
97 PF01113 DapB_N: Dihydrodipico 93.7 0.17 3.6E-06 48.0 6.6 99 214-348 2-102 (124)
98 KOG4169 15-hydroxyprostaglandi 93.6 0.13 2.7E-06 53.5 5.8 84 210-319 3-91 (261)
99 PF01118 Semialdhyde_dh: Semia 93.4 0.17 3.8E-06 47.5 6.1 109 214-357 1-112 (121)
100 PF10585 UBA_e1_thiolCys: Ubiq 93.4 0.076 1.6E-06 41.2 2.9 22 442-463 23-44 (45)
101 PF00056 Ldh_1_N: lactate/mala 93.3 0.25 5.3E-06 48.0 7.1 75 213-320 1-78 (141)
102 PRK04148 hypothetical protein; 93.3 0.33 7.2E-06 46.7 7.8 92 211-341 16-107 (134)
103 cd05291 HicDH_like L-2-hydroxy 93.2 0.2 4.4E-06 54.9 7.2 33 213-249 1-33 (306)
104 PRK10637 cysG siroheme synthas 93.2 0.27 5.8E-06 57.1 8.4 93 209-340 9-101 (457)
105 PRK06130 3-hydroxybutyryl-CoA 93.1 0.37 8E-06 52.8 9.0 32 213-250 5-36 (311)
106 COG0111 SerA Phosphoglycerate 92.9 0.12 2.6E-06 57.2 4.7 90 209-318 139-232 (324)
107 cd01080 NAD_bind_m-THF_DH_Cycl 92.9 0.13 2.9E-06 51.4 4.6 34 209-248 41-75 (168)
108 PRK08293 3-hydroxybutyryl-CoA 92.8 0.64 1.4E-05 50.4 10.3 32 213-250 4-35 (287)
109 PRK00066 ldh L-lactate dehydro 92.8 0.25 5.5E-06 54.5 7.1 75 212-319 6-81 (315)
110 cd05311 NAD_bind_2_malic_enz N 92.7 0.09 2E-06 55.2 3.3 37 209-250 22-60 (226)
111 cd05290 LDH_3 A subgroup of L- 92.6 0.39 8.5E-06 52.8 8.2 73 214-319 1-76 (307)
112 PRK09260 3-hydroxybutyryl-CoA 92.4 0.093 2E-06 56.9 3.0 32 213-250 2-33 (288)
113 COG0300 DltE Short-chain dehyd 92.4 0.39 8.5E-06 51.5 7.6 64 210-299 4-68 (265)
114 PF03446 NAD_binding_2: NAD bi 92.3 0.19 4.2E-06 49.7 4.9 30 213-248 2-31 (163)
115 cd05293 LDH_1 A subgroup of L- 92.2 0.49 1.1E-05 52.1 8.4 74 212-319 3-79 (312)
116 PTZ00082 L-lactate dehydrogena 92.1 0.35 7.7E-06 53.5 7.2 35 210-249 4-38 (321)
117 PRK13403 ketol-acid reductoiso 92.0 0.44 9.5E-06 52.5 7.5 36 207-248 11-46 (335)
118 PRK15469 ghrA bifunctional gly 91.6 0.21 4.6E-06 55.0 4.7 35 209-249 133-167 (312)
119 PLN02602 lactate dehydrogenase 91.5 0.47 1E-05 53.1 7.3 73 213-319 38-113 (350)
120 cd05213 NAD_bind_Glutamyl_tRNA 91.4 0.37 8.1E-06 53.0 6.4 35 210-249 176-210 (311)
121 cd00300 LDH_like L-lactate deh 91.1 0.58 1.3E-05 51.2 7.5 72 215-320 1-75 (300)
122 cd01078 NAD_bind_H4MPT_DH NADP 91.0 0.61 1.3E-05 47.4 7.1 83 209-322 25-108 (194)
123 COG1086 Predicted nucleoside-d 91.0 0.87 1.9E-05 53.2 8.9 88 204-318 242-332 (588)
124 PRK05854 short chain dehydroge 90.7 0.62 1.3E-05 51.0 7.4 63 210-297 12-75 (313)
125 PLN00203 glutamyl-tRNA reducta 90.6 0.33 7.2E-06 57.1 5.3 34 210-248 264-297 (519)
126 PRK13243 glyoxylate reductase; 90.6 0.41 8.8E-06 53.2 5.8 35 209-249 147-181 (333)
127 PRK14192 bifunctional 5,10-met 90.6 0.39 8.4E-06 52.2 5.4 34 209-248 156-190 (283)
128 PRK06197 short chain dehydroge 90.4 0.6 1.3E-05 50.8 6.8 35 209-249 13-48 (306)
129 PRK07063 short chain dehydroge 90.3 0.88 1.9E-05 47.9 7.8 64 209-297 4-68 (260)
130 PRK15438 erythronate-4-phospha 90.2 0.71 1.5E-05 52.2 7.3 35 209-249 113-147 (378)
131 PRK08410 2-hydroxyacid dehydro 90.0 0.75 1.6E-05 50.6 7.2 88 208-318 141-231 (311)
132 PRK09242 tropinone reductase; 89.9 1 2.2E-05 47.3 8.0 65 209-298 6-71 (257)
133 PRK05476 S-adenosyl-L-homocyst 89.9 0.71 1.5E-05 52.9 7.0 35 210-250 210-244 (425)
134 PLN02819 lysine-ketoglutarate 89.9 0.74 1.6E-05 58.2 7.7 104 211-343 568-679 (1042)
135 PRK07574 formate dehydrogenase 89.8 0.43 9.2E-06 54.1 5.2 35 209-249 189-223 (385)
136 PF02558 ApbA: Ketopantoate re 89.7 0.99 2.1E-05 43.6 7.0 28 215-248 1-28 (151)
137 PRK06487 glycerate dehydrogena 89.6 0.62 1.3E-05 51.5 6.1 35 209-249 145-179 (317)
138 TIGR00507 aroE shikimate 5-deh 89.5 0.79 1.7E-05 49.3 6.8 33 210-248 115-147 (270)
139 PRK11880 pyrroline-5-carboxyla 89.3 1.5 3.2E-05 46.8 8.7 33 213-248 3-35 (267)
140 PRK07062 short chain dehydroge 89.3 1.3 2.8E-05 46.8 8.1 63 210-297 6-69 (265)
141 PRK06932 glycerate dehydrogena 89.3 0.68 1.5E-05 51.1 6.2 34 209-248 144-177 (314)
142 PF03807 F420_oxidored: NADP o 89.3 0.99 2.1E-05 40.1 6.2 90 214-341 1-92 (96)
143 PRK07531 bifunctional 3-hydrox 88.9 2 4.4E-05 50.4 10.1 32 213-250 5-36 (495)
144 TIGR00872 gnd_rel 6-phosphoglu 88.8 0.43 9.3E-06 52.1 4.2 31 214-250 2-32 (298)
145 PRK09599 6-phosphogluconate de 88.7 0.62 1.3E-05 50.9 5.3 118 214-347 2-123 (301)
146 cd05191 NAD_bind_amino_acid_DH 88.7 0.45 9.7E-06 41.9 3.4 35 210-249 21-55 (86)
147 PRK14619 NAD(P)H-dependent gly 88.5 1.2 2.6E-05 48.9 7.4 33 212-250 4-36 (308)
148 COG1250 FadB 3-hydroxyacyl-CoA 88.4 0.71 1.5E-05 50.6 5.4 108 213-348 4-122 (307)
149 PLN03139 formate dehydrogenase 88.4 0.52 1.1E-05 53.4 4.5 36 208-249 195-230 (386)
150 PRK00257 erythronate-4-phospha 88.3 0.6 1.3E-05 52.8 5.0 35 209-249 113-147 (381)
151 PRK00048 dihydrodipicolinate r 88.2 1.5 3.2E-05 47.0 7.7 92 213-348 2-95 (257)
152 PLN02780 ketoreductase/ oxidor 88.0 1.7 3.7E-05 48.0 8.2 60 212-296 53-113 (320)
153 PRK11730 fadB multifunctional 88.0 0.56 1.2E-05 57.6 4.8 164 213-404 314-488 (715)
154 PRK06436 glycerate dehydrogena 87.9 0.38 8.2E-06 52.8 3.0 37 208-250 118-154 (303)
155 PTZ00325 malate dehydrogenase; 87.9 0.74 1.6E-05 50.9 5.3 36 210-249 6-42 (321)
156 COG0136 Asd Aspartate-semialde 87.9 1.6 3.4E-05 48.2 7.7 110 213-358 2-113 (334)
157 PRK11154 fadJ multifunctional 87.9 0.46 1E-05 58.2 4.0 160 213-398 310-480 (708)
158 PRK07831 short chain dehydroge 87.8 1.9 4.1E-05 45.5 8.2 33 210-248 15-49 (262)
159 cd01075 NAD_bind_Leu_Phe_Val_D 87.6 0.49 1.1E-05 48.7 3.5 36 209-250 25-60 (200)
160 TIGR00465 ilvC ketol-acid redu 87.6 2 4.3E-05 47.4 8.4 27 210-236 1-27 (314)
161 PRK08251 short chain dehydroge 87.3 2.1 4.6E-05 44.5 8.2 62 212-298 2-64 (248)
162 cd00401 AdoHcyase S-adenosyl-L 87.3 1.7 3.7E-05 49.7 7.9 35 210-250 200-234 (413)
163 PRK09496 trkA potassium transp 87.2 2.1 4.6E-05 49.3 8.8 89 213-335 1-89 (453)
164 PRK08618 ornithine cyclodeamin 87.2 1.9 4.2E-05 47.7 8.1 79 209-322 124-203 (325)
165 cd01488 Uba3_RUB Ubiquitin act 87.2 1.7 3.7E-05 47.4 7.4 78 98-178 197-274 (291)
166 PLN03209 translocon at the inn 87.1 2.8 6E-05 49.8 9.6 32 211-248 79-111 (576)
167 PRK05708 2-dehydropantoate 2-r 87.0 0.5 1.1E-05 51.8 3.3 32 212-249 2-33 (305)
168 PF02056 Glyco_hydro_4: Family 86.8 0.94 2E-05 46.0 4.9 109 214-349 1-113 (183)
169 PRK09496 trkA potassium transp 86.8 2.1 4.5E-05 49.3 8.4 94 210-336 229-322 (453)
170 PRK11908 NAD-dependent epimera 86.8 3.2 6.9E-05 45.9 9.6 31 213-249 2-34 (347)
171 COG1893 ApbA Ketopantoate redu 86.4 2.8 6.1E-05 46.1 8.7 23 213-235 1-23 (307)
172 PRK03562 glutathione-regulated 86.4 0.78 1.7E-05 55.4 4.7 89 212-335 400-488 (621)
173 PRK07634 pyrroline-5-carboxyla 86.3 3 6.6E-05 43.7 8.7 25 212-236 4-28 (245)
174 PRK05690 molybdopterin biosynt 86.2 0.55 1.2E-05 49.9 3.0 41 136-176 190-231 (245)
175 PF02254 TrkA_N: TrkA-N domain 86.2 2 4.4E-05 39.4 6.5 85 215-334 1-85 (116)
176 PF13460 NAD_binding_10: NADH( 86.1 4.3 9.4E-05 40.1 9.3 86 215-338 1-91 (183)
177 PRK06141 ornithine cyclodeamin 86.0 1.3 2.8E-05 48.9 5.8 79 207-321 120-199 (314)
178 cd05298 GH4_GlvA_pagL_like Gly 85.9 2.3 4.9E-05 49.2 8.0 110 213-350 1-113 (437)
179 cd05296 GH4_P_beta_glucosidase 85.8 1.9 4E-05 49.6 7.2 111 213-350 1-114 (419)
180 PRK09186 flagellin modificatio 85.8 2.3 5E-05 44.4 7.5 33 210-248 2-35 (256)
181 TIGR02992 ectoine_eutC ectoine 85.8 2.3 5E-05 47.1 7.7 76 211-321 128-204 (326)
182 PRK08328 hypothetical protein; 85.7 0.59 1.3E-05 49.2 2.9 40 137-176 183-223 (231)
183 TIGR01832 kduD 2-deoxy-D-gluco 85.7 1.8 3.9E-05 45.1 6.6 33 210-248 3-36 (248)
184 PTZ00117 malate dehydrogenase; 85.7 0.66 1.4E-05 51.3 3.4 34 211-249 4-37 (319)
185 PRK14175 bifunctional 5,10-met 85.6 1.3 2.7E-05 48.2 5.4 34 209-248 155-189 (286)
186 PRK07576 short chain dehydroge 85.4 1.4 3.1E-05 46.7 5.7 36 209-250 6-42 (264)
187 PRK12826 3-ketoacyl-(acyl-carr 85.4 2.5 5.5E-05 43.8 7.6 35 210-250 4-39 (251)
188 TIGR02441 fa_ox_alpha_mit fatt 85.4 0.83 1.8E-05 56.2 4.4 159 213-398 336-505 (737)
189 PF10727 Rossmann-like: Rossma 85.4 2.4 5.1E-05 40.5 6.5 26 211-236 9-34 (127)
190 PRK06476 pyrroline-5-carboxyla 85.4 2.5 5.5E-05 45.0 7.6 23 214-236 2-24 (258)
191 TIGR02440 FadJ fatty oxidation 85.3 0.83 1.8E-05 55.9 4.3 166 213-405 305-481 (699)
192 PTZ00431 pyrroline carboxylate 85.3 2.1 4.6E-05 45.7 7.0 37 211-249 2-38 (260)
193 PRK11790 D-3-phosphoglycerate 85.2 1.3 2.9E-05 50.6 5.7 35 209-249 148-182 (409)
194 PF02719 Polysacc_synt_2: Poly 85.2 0.53 1.2E-05 51.2 2.3 41 215-260 1-42 (293)
195 TIGR02355 moeB molybdopterin s 85.1 0.65 1.4E-05 49.2 2.9 41 136-176 182-223 (240)
196 PRK05335 tRNA (uracil-5-)-meth 85.0 0.72 1.6E-05 52.8 3.3 34 212-251 2-35 (436)
197 TIGR01035 hemA glutamyl-tRNA r 85.0 0.72 1.6E-05 52.9 3.4 36 209-249 177-212 (417)
198 PRK15409 bifunctional glyoxyla 85.0 1.4 3E-05 48.8 5.5 34 209-248 142-176 (323)
199 KOG0069 Glyoxylate/hydroxypyru 84.9 0.83 1.8E-05 50.5 3.7 29 207-235 157-185 (336)
200 PLN02206 UDP-glucuronate decar 84.9 2.1 4.6E-05 49.5 7.2 33 211-249 118-151 (442)
201 TIGR02437 FadB fatty oxidation 84.5 1.1 2.4E-05 54.9 4.9 161 213-398 314-483 (714)
202 PRK05867 short chain dehydroge 84.4 2 4.4E-05 45.0 6.3 33 210-248 7-40 (253)
203 PRK08217 fabG 3-ketoacyl-(acyl 84.1 2.3 4.9E-05 44.2 6.4 33 210-248 3-36 (253)
204 PRK14982 acyl-ACP reductase; P 84.0 0.86 1.9E-05 50.7 3.3 36 209-249 152-189 (340)
205 PRK07340 ornithine cyclodeamin 83.9 1.6 3.6E-05 47.8 5.5 76 209-321 122-198 (304)
206 PRK07478 short chain dehydroge 83.9 2.3 5E-05 44.6 6.4 33 210-248 4-37 (254)
207 PF00106 adh_short: short chai 83.9 1.5 3.2E-05 42.6 4.7 60 214-297 2-62 (167)
208 PRK06522 2-dehydropantoate 2-r 83.9 0.96 2.1E-05 49.0 3.6 31 213-249 1-31 (304)
209 COG1063 Tdh Threonine dehydrog 83.6 4.8 0.0001 45.0 9.1 97 214-340 171-267 (350)
210 PLN02253 xanthoxin dehydrogena 83.5 3 6.4E-05 44.5 7.2 34 209-248 15-49 (280)
211 KOG1205 Predicted dehydrogenas 83.5 1.8 4E-05 46.8 5.5 92 203-319 3-99 (282)
212 PRK12480 D-lactate dehydrogena 83.5 0.96 2.1E-05 50.2 3.5 36 209-250 143-178 (330)
213 PRK05875 short chain dehydroge 83.4 3.6 7.9E-05 43.6 7.8 33 210-248 5-38 (276)
214 PLN02306 hydroxypyruvate reduc 83.4 1.4 3E-05 50.1 4.7 35 209-249 162-197 (386)
215 PRK06249 2-dehydropantoate 2-r 83.4 0.95 2.1E-05 49.7 3.4 34 212-251 5-38 (313)
216 PLN02688 pyrroline-5-carboxyla 83.3 5 0.00011 42.8 8.8 24 213-236 1-24 (266)
217 PRK08291 ectoine utilization p 83.3 3.4 7.3E-05 45.9 7.7 75 212-321 132-207 (330)
218 PRK08655 prephenate dehydrogen 83.3 2 4.3E-05 49.7 6.0 30 214-249 2-32 (437)
219 PRK10537 voltage-gated potassi 83.1 2 4.4E-05 48.9 5.9 88 212-336 240-327 (393)
220 PRK12384 sorbitol-6-phosphate 83.0 4.4 9.6E-05 42.5 8.2 32 212-249 2-34 (259)
221 PLN02350 phosphogluconate dehy 83.0 5.1 0.00011 47.0 9.3 123 213-347 7-136 (493)
222 PRK06138 short chain dehydroge 83.0 4 8.7E-05 42.4 7.8 33 210-248 3-36 (252)
223 PLN02240 UDP-glucose 4-epimera 82.9 5.4 0.00012 43.9 9.2 33 210-248 3-36 (352)
224 PLN02166 dTDP-glucose 4,6-dehy 82.8 3.7 8E-05 47.5 8.0 33 212-250 120-153 (436)
225 PRK12939 short chain dehydroge 82.7 2.8 6.1E-05 43.5 6.5 33 210-248 5-38 (250)
226 PRK06523 short chain dehydroge 82.5 2.7 5.9E-05 44.1 6.3 37 209-251 6-43 (260)
227 PRK12490 6-phosphogluconate de 82.4 1.8 3.9E-05 47.3 5.1 31 214-250 2-32 (299)
228 TIGR01915 npdG NADPH-dependent 82.3 9.2 0.0002 39.7 10.1 30 213-248 1-31 (219)
229 cd05211 NAD_bind_Glu_Leu_Phe_V 82.2 1.2 2.7E-05 46.4 3.5 37 209-250 20-56 (217)
230 TIGR02853 spore_dpaA dipicolin 82.2 1.1 2.3E-05 48.9 3.2 90 142-248 92-181 (287)
231 cd00757 ThiF_MoeB_HesA_family 82.1 1 2.3E-05 47.2 2.9 42 135-176 178-220 (228)
232 cd00762 NAD_bind_malic_enz NAD 82.1 1.1 2.3E-05 47.9 2.9 44 208-251 21-69 (254)
233 PRK05866 short chain dehydroge 82.1 2.9 6.2E-05 45.4 6.5 33 210-248 38-71 (293)
234 PRK00676 hemA glutamyl-tRNA re 82.1 1.1 2.4E-05 49.8 3.2 35 208-247 170-204 (338)
235 PRK00045 hemA glutamyl-tRNA re 82.1 1.1 2.4E-05 51.5 3.4 35 210-249 180-214 (423)
236 TIGR00873 gnd 6-phosphoglucona 82.0 1.8 4E-05 50.3 5.2 120 214-347 1-127 (467)
237 PRK12550 shikimate 5-dehydroge 82.0 1.4 3E-05 47.7 3.8 31 213-248 123-153 (272)
238 PTZ00142 6-phosphogluconate de 82.0 1.6 3.5E-05 50.9 4.6 123 213-347 2-130 (470)
239 PRK06125 short chain dehydroge 81.8 4.5 9.7E-05 42.6 7.7 34 210-249 5-39 (259)
240 PRK06728 aspartate-semialdehyd 81.8 3.8 8.3E-05 45.8 7.3 108 212-358 5-115 (347)
241 PRK06139 short chain dehydroge 81.6 2.9 6.3E-05 46.4 6.4 34 209-248 4-38 (330)
242 PRK07530 3-hydroxybutyryl-CoA 81.6 1.3 2.9E-05 48.0 3.6 32 213-250 5-36 (292)
243 PLN02427 UDP-apiose/xylose syn 81.5 3.5 7.5E-05 46.5 7.1 35 209-249 11-47 (386)
244 TIGR00137 gid_trmFO tRNA:m(5)U 81.4 1.3 2.9E-05 50.8 3.7 32 213-250 1-32 (433)
245 PRK08339 short chain dehydroge 81.4 4.7 0.0001 42.8 7.7 33 210-248 6-39 (263)
246 KOG2015 NEDD8-activating compl 81.3 11 0.00025 41.1 10.2 80 97-179 240-319 (422)
247 PLN02968 Probable N-acetyl-gam 81.2 3.6 7.8E-05 46.7 7.0 98 211-344 37-135 (381)
248 PLN02545 3-hydroxybutyryl-CoA 81.2 1.5 3.2E-05 47.8 3.8 32 213-250 5-36 (295)
249 KOG0024 Sorbitol dehydrogenase 81.2 4.6 9.9E-05 44.3 7.3 34 211-249 169-202 (354)
250 PRK13304 L-aspartate dehydroge 81.1 5 0.00011 43.1 7.8 23 213-235 2-24 (265)
251 PRK06035 3-hydroxyacyl-CoA deh 81.1 1.4 3.1E-05 47.8 3.6 33 213-251 4-36 (291)
252 TIGR02632 RhaD_aldol-ADH rhamn 81.0 4.9 0.00011 49.1 8.6 34 210-249 412-446 (676)
253 PRK12367 short chain dehydroge 81.0 1.6 3.5E-05 46.1 3.9 39 206-250 8-47 (245)
254 PLN00106 malate dehydrogenase 80.9 1.5 3.3E-05 48.6 3.7 37 211-251 17-54 (323)
255 PRK07792 fabG 3-ketoacyl-(acyl 80.7 3.3 7.1E-05 45.2 6.4 35 209-249 9-44 (306)
256 cd05292 LDH_2 A subgroup of L- 80.7 1.6 3.4E-05 48.0 3.8 32 214-249 2-33 (308)
257 PLN02928 oxidoreductase family 80.7 1.3 2.9E-05 49.5 3.2 36 208-249 155-190 (347)
258 TIGR03589 PseB UDP-N-acetylglu 80.7 5.2 0.00011 44.0 7.9 37 210-250 2-39 (324)
259 COG2085 Predicted dinucleotide 80.6 4.8 0.0001 41.7 7.0 139 213-355 2-191 (211)
260 PRK07814 short chain dehydroge 80.3 3.9 8.4E-05 43.3 6.6 35 210-250 8-43 (263)
261 COG0039 Mdh Malate/lactate deh 80.3 1.5 3.1E-05 48.3 3.3 31 213-248 1-32 (313)
262 cd01338 MDH_choloroplast_like 80.3 1.4 3.1E-05 48.7 3.3 36 213-248 3-40 (322)
263 TIGR03466 HpnA hopanoid-associ 80.2 4.9 0.00011 43.5 7.6 31 214-250 2-33 (328)
264 PRK07067 sorbitol dehydrogenas 80.2 2.7 5.8E-05 44.1 5.3 36 210-251 4-40 (257)
265 TIGR01327 PGDH D-3-phosphoglyc 80.1 2.1 4.6E-05 50.6 4.9 35 209-249 135-169 (525)
266 PRK13302 putative L-aspartate 80.1 4.1 8.9E-05 44.0 6.7 23 212-234 6-28 (271)
267 TIGR03206 benzo_BadH 2-hydroxy 80.1 4 8.7E-05 42.4 6.5 34 210-249 1-35 (250)
268 TIGR01771 L-LDH-NAD L-lactate 79.9 3 6.5E-05 45.7 5.6 28 217-248 1-28 (299)
269 PRK06940 short chain dehydroge 79.9 4.5 9.7E-05 43.3 6.9 31 212-249 2-32 (275)
270 PRK08229 2-dehydropantoate 2-r 79.9 1.5 3.2E-05 48.6 3.3 32 213-250 3-34 (341)
271 TIGR01850 argC N-acetyl-gamma- 79.9 4.7 0.0001 45.1 7.3 98 213-344 1-100 (346)
272 TIGR01759 MalateDH-SF1 malate 79.8 1.5 3.3E-05 48.5 3.4 36 213-248 4-41 (323)
273 PRK06223 malate dehydrogenase; 79.8 1.7 3.6E-05 47.6 3.7 32 213-249 3-34 (307)
274 PRK13529 malate dehydrogenase; 79.7 0.81 1.8E-05 53.7 1.2 90 152-251 227-339 (563)
275 PRK08589 short chain dehydroge 79.7 4 8.7E-05 43.5 6.5 33 210-248 4-37 (272)
276 PRK03659 glutathione-regulated 79.6 2.1 4.5E-05 51.5 4.7 89 212-335 400-488 (601)
277 PRK12827 short chain dehydroge 79.5 4.9 0.00011 41.6 6.9 33 210-248 4-37 (249)
278 COG1712 Predicted dinucleotide 79.5 4.3 9.2E-05 42.4 6.1 22 213-235 1-22 (255)
279 PRK12409 D-amino acid dehydrog 79.5 1.7 3.6E-05 49.4 3.7 33 213-251 2-34 (410)
280 TIGR00036 dapB dihydrodipicoli 79.4 3.8 8.3E-05 44.0 6.2 31 310-341 67-97 (266)
281 PLN03129 NADP-dependent malic 79.4 0.86 1.9E-05 53.7 1.3 89 152-251 252-366 (581)
282 KOG1209 1-Acyl dihydroxyaceton 79.2 4.1 8.9E-05 42.2 5.9 79 212-296 7-89 (289)
283 PRK06181 short chain dehydroge 79.1 6.6 0.00014 41.3 7.9 30 213-248 2-32 (263)
284 TIGR01181 dTDP_gluc_dehyt dTDP 79.1 7.7 0.00017 41.6 8.5 31 214-248 1-32 (317)
285 PRK06949 short chain dehydroge 79.0 4.9 0.00011 42.0 6.8 33 210-248 7-40 (258)
286 PRK13301 putative L-aspartate 79.0 1.8 3.9E-05 46.4 3.5 23 212-234 2-24 (267)
287 TIGR01202 bchC 2-desacetyl-2-h 78.9 5.7 0.00012 43.3 7.5 34 211-249 144-177 (308)
288 PRK08416 7-alpha-hydroxysteroi 78.8 6.4 0.00014 41.5 7.7 33 209-247 5-38 (260)
289 PRK12921 2-dehydropantoate 2-r 78.8 1.8 3.9E-05 47.0 3.5 30 213-248 1-30 (305)
290 PRK11259 solA N-methyltryptoph 78.8 1.7 3.7E-05 48.4 3.4 35 212-252 3-37 (376)
291 PRK06129 3-hydroxyacyl-CoA deh 78.7 1.8 4E-05 47.4 3.6 33 213-251 3-35 (308)
292 PRK08223 hypothetical protein; 78.4 1.5 3.3E-05 47.5 2.8 37 141-177 219-257 (287)
293 PRK06720 hypothetical protein; 78.4 5.5 0.00012 39.8 6.5 35 210-250 14-49 (169)
294 PRK07680 late competence prote 78.3 7.8 0.00017 41.6 8.2 33 214-248 2-34 (273)
295 PRK12491 pyrroline-5-carboxyla 78.3 8.6 0.00019 41.5 8.5 35 212-248 2-36 (272)
296 PRK05872 short chain dehydroge 78.2 6.7 0.00014 42.4 7.8 34 210-249 7-41 (296)
297 PRK05876 short chain dehydroge 78.2 5 0.00011 42.9 6.7 33 210-248 4-37 (275)
298 TIGR01296 asd_B aspartate-semi 78.2 4.5 9.9E-05 45.1 6.5 90 214-342 1-91 (339)
299 COG1052 LdhA Lactate dehydroge 78.1 3.4 7.3E-05 45.8 5.4 34 209-248 143-176 (324)
300 TIGR01772 MDH_euk_gproteo mala 78.1 2.2 4.7E-05 47.1 3.9 33 214-250 1-34 (312)
301 PRK05597 molybdopterin biosynt 78.1 1.6 3.5E-05 49.0 2.9 41 136-176 187-228 (355)
302 PF01494 FAD_binding_3: FAD bi 78.0 1.9 4E-05 47.0 3.4 33 213-251 2-34 (356)
303 PLN02383 aspartate semialdehyd 78.0 6.8 0.00015 43.8 7.8 108 212-358 7-116 (344)
304 PRK00094 gpsA NAD(P)H-dependen 78.0 2 4.3E-05 47.0 3.6 32 213-250 2-33 (325)
305 PRK14188 bifunctional 5,10-met 78.0 4.8 0.0001 44.0 6.4 34 209-248 155-189 (296)
306 PRK14874 aspartate-semialdehyd 77.9 5.4 0.00012 44.4 7.0 90 213-341 2-92 (334)
307 PRK05479 ketol-acid reductoiso 77.8 1.8 4E-05 48.0 3.2 29 208-236 13-41 (330)
308 PRK04207 glyceraldehyde-3-phos 77.8 8 0.00017 43.2 8.3 36 308-344 75-110 (341)
309 PRK06057 short chain dehydroge 77.8 1.7 3.7E-05 45.6 2.9 35 209-249 4-39 (255)
310 PRK00711 D-amino acid dehydrog 77.8 2 4.3E-05 48.7 3.6 32 214-251 2-33 (416)
311 PRK05225 ketol-acid reductoiso 77.7 1.1 2.4E-05 51.4 1.5 38 199-236 19-60 (487)
312 PRK07102 short chain dehydroge 77.7 8.2 0.00018 40.1 8.0 32 213-250 2-34 (243)
313 PRK07878 molybdopterin biosynt 77.6 1.7 3.7E-05 49.5 3.0 41 137-177 206-247 (392)
314 PRK12429 3-hydroxybutyrate deh 77.5 7.8 0.00017 40.3 7.8 33 210-248 2-35 (258)
315 PRK05442 malate dehydrogenase; 77.5 2 4.4E-05 47.6 3.4 36 213-248 5-42 (326)
316 cd00650 LDH_MDH_like NAD-depen 77.5 4.2 9E-05 43.5 5.8 32 215-250 1-35 (263)
317 cd01337 MDH_glyoxysomal_mitoch 77.4 2.2 4.7E-05 47.1 3.6 34 213-250 1-35 (310)
318 PRK07856 short chain dehydroge 77.3 5.2 0.00011 41.9 6.4 36 210-251 4-40 (252)
319 PRK09880 L-idonate 5-dehydroge 77.3 8.8 0.00019 42.4 8.5 33 211-248 169-201 (343)
320 PRK05717 oxidoreductase; Valid 77.2 3 6.4E-05 43.8 4.5 35 210-250 8-43 (255)
321 PRK08125 bifunctional UDP-gluc 77.2 9 0.0002 46.7 9.2 41 204-250 307-349 (660)
322 PRK14618 NAD(P)H-dependent gly 77.2 2.2 4.8E-05 47.1 3.7 32 213-250 5-36 (328)
323 PRK08762 molybdopterin biosynt 77.2 1.7 3.7E-05 49.1 2.8 40 137-176 299-339 (376)
324 PRK01438 murD UDP-N-acetylmura 77.0 1.9 4.2E-05 50.1 3.3 35 210-250 14-48 (480)
325 PRK06398 aldose dehydrogenase; 77.0 5.8 0.00013 41.8 6.7 36 209-250 3-39 (258)
326 PRK14620 NAD(P)H-dependent gly 77.0 2.2 4.8E-05 47.1 3.6 31 214-250 2-32 (326)
327 PRK07109 short chain dehydroge 76.9 5.1 0.00011 44.4 6.5 33 210-248 6-39 (334)
328 PRK07097 gluconate 5-dehydroge 76.7 5.5 0.00012 42.1 6.5 34 209-248 7-41 (265)
329 PRK08306 dipicolinate synthase 76.7 2.1 4.5E-05 46.8 3.2 34 210-249 150-183 (296)
330 PRK07774 short chain dehydroge 76.5 3 6.5E-05 43.4 4.3 34 210-249 4-38 (250)
331 PRK10669 putative cation:proto 76.5 3.1 6.7E-05 49.6 4.9 34 212-251 417-450 (558)
332 PLN03075 nicotianamine synthas 76.5 94 0.002 34.1 15.7 54 193-250 103-158 (296)
333 PRK12743 oxidoreductase; Provi 76.4 6.9 0.00015 41.1 7.0 30 212-247 2-32 (256)
334 PRK08374 homoserine dehydrogen 76.1 8.4 0.00018 42.9 7.9 33 310-343 90-122 (336)
335 TIGR01377 soxA_mon sarcosine o 76.0 2.4 5.3E-05 47.3 3.7 33 214-252 2-34 (380)
336 PRK08085 gluconate 5-dehydroge 76.0 6 0.00013 41.4 6.4 33 210-248 7-40 (254)
337 PRK08300 acetaldehyde dehydrog 76.0 11 0.00023 41.5 8.4 47 309-359 68-114 (302)
338 TIGR00936 ahcY adenosylhomocys 75.9 2.1 4.7E-05 48.8 3.2 36 210-251 193-228 (406)
339 PF05834 Lycopene_cycl: Lycope 75.9 4.4 9.6E-05 45.7 5.7 66 215-291 2-69 (374)
340 cd05197 GH4_glycoside_hydrolas 75.8 9.2 0.0002 44.1 8.3 110 213-350 1-113 (425)
341 PRK07453 protochlorophyllide o 75.8 6.1 0.00013 43.2 6.7 33 211-249 5-38 (322)
342 PF01210 NAD_Gly3P_dh_N: NAD-d 75.8 2.8 6.2E-05 41.2 3.6 102 214-347 1-106 (157)
343 PF00670 AdoHcyase_NAD: S-aden 75.8 2.5 5.4E-05 42.0 3.2 37 209-251 20-56 (162)
344 PRK08040 putative semialdehyde 75.8 8.5 0.00018 42.9 7.7 93 211-342 3-96 (336)
345 PF01266 DAO: FAD dependent ox 75.5 2.6 5.5E-05 46.0 3.6 34 214-253 1-34 (358)
346 TIGR02028 ChlP geranylgeranyl 75.5 2.3 5E-05 48.3 3.3 31 214-250 2-32 (398)
347 PTZ00075 Adenosylhomocysteinas 75.5 2.3 5.1E-05 49.3 3.3 36 209-250 251-286 (476)
348 PRK07417 arogenate dehydrogena 75.4 2.5 5.5E-05 45.6 3.5 30 214-249 2-31 (279)
349 PF04321 RmlD_sub_bind: RmlD s 75.4 7.1 0.00015 42.3 7.0 99 213-345 1-102 (286)
350 TIGR00518 alaDH alanine dehydr 75.3 2.4 5.1E-05 48.0 3.3 35 210-250 165-199 (370)
351 PRK06185 hypothetical protein; 75.2 2.7 5.7E-05 47.6 3.7 35 211-251 5-39 (407)
352 TIGR03364 HpnW_proposed FAD de 75.2 2.8 6.2E-05 46.6 3.9 33 214-252 2-34 (365)
353 PLN02494 adenosylhomocysteinas 75.2 2.5 5.4E-05 49.0 3.4 35 210-250 252-286 (477)
354 PRK15076 alpha-galactosidase; 75.2 10 0.00022 43.8 8.4 107 213-349 2-116 (431)
355 PRK06841 short chain dehydroge 75.1 2.7 5.8E-05 44.0 3.4 34 210-249 13-47 (255)
356 COG1062 AdhC Zn-dependent alco 75.0 9.7 0.00021 42.2 7.6 94 212-338 186-281 (366)
357 PRK12744 short chain dehydroge 74.8 7.6 0.00017 40.7 6.9 27 210-236 6-33 (257)
358 COG0771 MurD UDP-N-acetylmuram 74.8 4.3 9.3E-05 46.9 5.2 42 210-258 5-46 (448)
359 PRK07411 hypothetical protein; 74.5 2.3 4.9E-05 48.4 2.9 41 136-176 197-238 (390)
360 PRK07494 2-octaprenyl-6-methox 74.4 2.6 5.6E-05 47.4 3.3 33 213-251 8-40 (388)
361 PRK13303 L-aspartate dehydroge 74.4 7 0.00015 42.0 6.5 22 213-234 2-23 (265)
362 PRK08818 prephenate dehydrogen 74.3 7.9 0.00017 43.8 7.1 34 210-249 2-37 (370)
363 PRK11101 glpA sn-glycerol-3-ph 74.3 2.8 6E-05 49.9 3.7 35 213-253 7-41 (546)
364 cd00704 MDH Malate dehydrogena 74.1 3.1 6.7E-05 46.1 3.7 38 213-250 1-40 (323)
365 PRK12748 3-ketoacyl-(acyl-carr 74.0 6.2 0.00013 41.4 5.9 35 210-250 3-40 (256)
366 PF03949 Malic_M: Malic enzyme 74.0 3.4 7.3E-05 44.1 3.8 42 209-250 22-68 (255)
367 PRK08862 short chain dehydroge 74.0 7.4 0.00016 40.5 6.4 33 210-248 3-36 (227)
368 smart00859 Semialdhyde_dh Semi 73.9 19 0.00041 33.5 8.6 48 310-357 64-114 (122)
369 PRK00436 argC N-acetyl-gamma-g 73.9 9 0.0002 42.8 7.4 34 309-343 66-99 (343)
370 PRK01747 mnmC bifunctional tRN 73.9 2.8 6E-05 51.1 3.6 33 213-251 261-293 (662)
371 PRK08063 enoyl-(acyl carrier p 73.7 6.9 0.00015 40.6 6.2 26 211-236 3-29 (250)
372 PRK08605 D-lactate dehydrogena 73.7 2.7 5.9E-05 46.7 3.2 35 209-249 143-178 (332)
373 TIGR01763 MalateDH_bact malate 73.7 3.1 6.6E-05 45.7 3.6 32 213-249 2-33 (305)
374 cd08239 THR_DH_like L-threonin 73.6 8.3 0.00018 42.3 7.1 32 212-248 164-195 (339)
375 PF13478 XdhC_C: XdhC Rossmann 73.5 3.1 6.7E-05 40.2 3.2 30 215-250 1-30 (136)
376 cd05312 NAD_bind_1_malic_enz N 73.5 3.4 7.3E-05 44.7 3.7 44 208-251 21-69 (279)
377 PLN02520 bifunctional 3-dehydr 73.5 2.8 6.2E-05 49.6 3.5 33 210-248 377-409 (529)
378 TIGR01758 MDH_euk_cyt malate d 73.5 3 6.6E-05 46.2 3.5 36 214-249 1-38 (324)
379 KOG1014 17 beta-hydroxysteroid 73.4 13 0.00027 40.8 8.0 78 215-319 52-134 (312)
380 PRK12266 glpD glycerol-3-phosp 73.2 3.5 7.6E-05 48.6 4.2 36 213-254 7-42 (508)
381 PRK08945 putative oxoacyl-(acy 73.2 5.1 0.00011 41.7 5.0 36 209-250 9-45 (247)
382 PRK07688 thiamine/molybdopteri 73.1 2.7 5.8E-05 47.0 3.0 40 137-176 184-224 (339)
383 TIGR01373 soxB sarcosine oxida 73.1 3.7 8E-05 46.5 4.2 38 212-254 30-68 (407)
384 TIGR01757 Malate-DH_plant mala 73.0 3.4 7.3E-05 46.9 3.8 80 212-319 44-128 (387)
385 cd01339 LDH-like_MDH L-lactate 73.0 2.8 6.1E-05 45.8 3.1 31 215-250 1-31 (300)
386 PRK07523 gluconate 5-dehydroge 73.0 3.2 6.9E-05 43.5 3.4 34 210-249 8-42 (255)
387 PRK06947 glucose-1-dehydrogena 72.8 10 0.00023 39.3 7.3 24 213-236 3-27 (248)
388 PTZ00317 NADP-dependent malic 72.8 1.6 3.5E-05 51.3 1.1 90 152-251 229-341 (559)
389 PRK08773 2-octaprenyl-3-methyl 72.8 3.1 6.6E-05 46.9 3.4 34 212-251 6-39 (392)
390 PRK05855 short chain dehydroge 72.8 6.1 0.00013 46.5 6.1 38 205-248 308-346 (582)
391 PRK07502 cyclohexadienyl dehyd 72.7 3.2 6.8E-05 45.5 3.4 33 213-249 7-39 (307)
392 PRK07889 enoyl-(acyl carrier p 72.6 8.8 0.00019 40.5 6.7 35 209-249 4-41 (256)
393 PLN02896 cinnamyl-alcohol dehy 72.6 12 0.00025 41.6 8.0 33 211-249 9-42 (353)
394 PRK09126 hypothetical protein; 72.6 3 6.4E-05 46.9 3.2 34 212-251 3-36 (392)
395 PLN02852 ferredoxin-NADP+ redu 72.6 10 0.00022 44.6 7.7 42 212-260 26-69 (491)
396 PRK08277 D-mannonate oxidoredu 72.5 5.4 0.00012 42.4 5.1 83 210-319 8-95 (278)
397 CHL00194 ycf39 Ycf39; Provisio 72.5 11 0.00023 41.3 7.6 29 214-248 2-31 (317)
398 PRK05714 2-octaprenyl-3-methyl 72.4 3 6.4E-05 47.3 3.2 33 213-251 3-35 (405)
399 PRK06179 short chain dehydroge 72.2 9.2 0.0002 40.4 6.8 34 212-251 4-38 (270)
400 PRK12769 putative oxidoreducta 72.1 13 0.00028 45.3 8.7 34 211-250 326-359 (654)
401 PRK05600 thiamine biosynthesis 72.1 2.8 6.2E-05 47.3 2.9 40 137-176 204-244 (370)
402 PRK07825 short chain dehydroge 72.0 5 0.00011 42.6 4.7 34 210-249 3-37 (273)
403 PRK05650 short chain dehydroge 72.0 9.4 0.0002 40.4 6.8 29 214-248 2-31 (270)
404 PLN02989 cinnamyl-alcohol dehy 72.0 11 0.00024 41.1 7.5 31 212-248 5-36 (325)
405 PRK07231 fabG 3-ketoacyl-(acyl 71.9 3.2 6.8E-05 43.1 3.1 34 210-249 3-37 (251)
406 PRK08643 acetoin reductase; Va 71.9 7.4 0.00016 40.7 5.9 32 212-249 2-34 (256)
407 PRK06753 hypothetical protein; 71.9 3.5 7.7E-05 45.9 3.7 33 213-251 1-33 (373)
408 COG1087 GalE UDP-glucose 4-epi 71.9 16 0.00035 39.9 8.3 116 213-351 1-125 (329)
409 PRK06194 hypothetical protein; 71.8 3.3 7.2E-05 44.2 3.3 34 210-249 4-38 (287)
410 COG0281 SfcA Malic enzyme [Ene 71.8 2.7 5.9E-05 47.5 2.6 102 208-344 195-300 (432)
411 cd08281 liver_ADH_like1 Zinc-d 71.6 11 0.00023 42.3 7.4 32 212-248 192-223 (371)
412 cd01484 E1-2_like Ubiquitin ac 71.5 5.1 0.00011 42.4 4.5 56 442-542 159-214 (234)
413 PRK12829 short chain dehydroge 71.4 4.2 9.1E-05 42.6 3.9 36 207-248 6-42 (264)
414 PRK12828 short chain dehydroge 71.4 3.4 7.4E-05 42.3 3.2 35 210-250 5-40 (239)
415 PRK05671 aspartate-semialdehyd 71.4 11 0.00023 42.2 7.1 106 213-358 5-112 (336)
416 PRK12861 malic enzyme; Reviewe 71.3 1.9 4.1E-05 52.8 1.3 41 208-251 185-225 (764)
417 COG0665 DadA Glycine/D-amino a 71.3 4 8.6E-05 45.6 3.9 41 211-257 3-43 (387)
418 PRK07035 short chain dehydroge 71.1 4.9 0.00011 41.9 4.3 34 210-249 6-40 (252)
419 PLN02464 glycerol-3-phosphate 71.0 3.6 7.8E-05 49.8 3.6 37 213-255 72-108 (627)
420 PRK00141 murD UDP-N-acetylmura 71.0 3.6 7.9E-05 48.0 3.6 37 208-250 11-47 (473)
421 PRK11728 hydroxyglutarate oxid 70.8 3.9 8.5E-05 46.2 3.7 33 213-251 3-37 (393)
422 PRK07608 ubiquinone biosynthes 70.7 3.9 8.5E-05 45.8 3.7 34 213-252 6-39 (388)
423 TIGR01292 TRX_reduct thioredox 70.7 4 8.7E-05 43.6 3.6 32 214-251 2-33 (300)
424 PRK08265 short chain dehydroge 70.6 5.5 0.00012 42.1 4.6 35 210-250 4-39 (261)
425 TIGR02023 BchP-ChlP geranylger 70.5 3.5 7.7E-05 46.5 3.3 31 214-250 2-32 (388)
426 KOG2013 SMT3/SUMO-activating c 70.5 2.7 5.9E-05 48.0 2.2 63 450-526 305-367 (603)
427 cd01076 NAD_bind_1_Glu_DH NAD( 70.5 4.1 9E-05 42.8 3.5 38 208-250 27-64 (227)
428 KOG0409 Predicted dehydrogenas 70.4 5.7 0.00012 43.2 4.5 32 211-248 34-65 (327)
429 PRK07236 hypothetical protein; 70.4 3.6 7.7E-05 46.4 3.3 34 211-250 5-38 (386)
430 PLN02256 arogenate dehydrogena 70.3 3.5 7.6E-05 45.3 3.1 35 209-249 33-67 (304)
431 PRK08628 short chain dehydroge 70.2 8.8 0.00019 40.2 6.0 34 210-249 5-39 (258)
432 TIGR01505 tartro_sem_red 2-hyd 70.2 4.1 8.9E-05 44.1 3.6 30 214-249 1-30 (291)
433 PRK06128 oxidoreductase; Provi 70.0 7.9 0.00017 41.9 5.8 34 209-248 52-86 (300)
434 PRK08850 2-octaprenyl-6-methox 70.0 3.9 8.4E-05 46.4 3.5 33 212-250 4-36 (405)
435 PLN00112 malate dehydrogenase 70.0 11 0.00024 43.5 7.2 37 212-248 100-140 (444)
436 PRK08013 oxidoreductase; Provi 70.0 3.6 7.7E-05 46.7 3.2 34 212-251 3-36 (400)
437 PRK06184 hypothetical protein; 69.9 3.5 7.5E-05 48.3 3.1 33 212-250 3-35 (502)
438 PRK11559 garR tartronate semia 69.8 4.4 9.5E-05 43.9 3.7 31 213-249 3-33 (296)
439 PRK08642 fabG 3-ketoacyl-(acyl 69.8 8 0.00017 40.2 5.5 27 210-236 3-30 (253)
440 PRK09310 aroDE bifunctional 3- 69.7 3.8 8.2E-05 47.9 3.4 33 210-248 330-362 (477)
441 PRK15181 Vi polysaccharide bio 69.6 10 0.00022 42.1 6.6 36 209-250 12-48 (348)
442 TIGR02279 PaaC-3OHAcCoADH 3-hy 69.6 4.1 9E-05 47.9 3.7 33 212-250 5-37 (503)
443 TIGR03376 glycerol3P_DH glycer 69.6 12 0.00026 41.9 7.1 22 214-235 1-22 (342)
444 PRK12823 benD 1,6-dihydroxycyc 69.6 4 8.6E-05 42.8 3.2 34 209-248 5-39 (260)
445 KOG0068 D-3-phosphoglycerate d 69.5 4.3 9.2E-05 44.7 3.4 76 209-308 143-222 (406)
446 cd01336 MDH_cytoplasmic_cytoso 69.4 4 8.8E-05 45.2 3.3 38 213-250 3-42 (325)
447 PRK05868 hypothetical protein; 69.4 4.5 9.8E-05 45.5 3.8 32 213-250 2-33 (372)
448 TIGR00715 precor6x_red precorr 69.3 17 0.00038 38.9 8.0 93 213-341 1-97 (256)
449 PRK06847 hypothetical protein; 69.3 4.3 9.2E-05 45.3 3.6 33 212-250 4-36 (375)
450 cd08230 glucose_DH Glucose deh 69.2 16 0.00035 40.4 8.2 33 211-249 172-204 (355)
451 PRK11863 N-acetyl-gamma-glutam 69.1 16 0.00035 40.3 7.9 52 308-360 47-99 (313)
452 PRK08268 3-hydroxy-acyl-CoA de 69.1 4.4 9.5E-05 47.8 3.7 32 213-250 8-39 (507)
453 PRK08244 hypothetical protein; 69.1 4.2 9E-05 47.5 3.6 32 213-250 3-34 (493)
454 PLN03096 glyceraldehyde-3-phos 69.0 5.2 0.00011 45.4 4.1 133 211-359 59-196 (395)
455 PRK06046 alanine dehydrogenase 69.0 14 0.00031 40.9 7.5 86 211-346 128-214 (326)
456 TIGR03451 mycoS_dep_FDH mycoth 68.9 11 0.00025 41.8 6.9 33 212-249 177-209 (358)
457 COG1486 CelF Alpha-galactosida 68.9 15 0.00032 42.3 7.6 152 211-394 2-157 (442)
458 PRK07364 2-octaprenyl-6-methox 68.9 4.2 9.1E-05 46.1 3.5 33 213-251 19-51 (415)
459 TIGR02032 GG-red-SF geranylger 68.7 4.6 0.0001 42.9 3.6 33 214-252 2-34 (295)
460 TIGR01851 argC_other N-acetyl- 68.6 13 0.00028 40.9 7.0 54 307-361 45-99 (310)
461 PRK13581 D-3-phosphoglycerate 68.4 4.2 9.1E-05 48.2 3.4 35 209-249 137-171 (526)
462 TIGR01984 UbiH 2-polyprenyl-6- 68.4 4 8.7E-05 45.6 3.1 32 214-251 1-33 (382)
463 PRK06500 short chain dehydroge 68.3 4.5 9.7E-05 42.0 3.3 34 210-249 4-38 (249)
464 PRK07060 short chain dehydroge 68.2 4.7 0.0001 41.7 3.4 34 210-249 7-41 (245)
465 TIGR03329 Phn_aa_oxid putative 68.2 5.4 0.00012 46.2 4.2 41 213-259 25-67 (460)
466 PRK08020 ubiF 2-octaprenyl-3-m 68.2 4.3 9.3E-05 45.6 3.3 33 213-251 6-38 (391)
467 TIGR03026 NDP-sugDHase nucleot 68.2 4.8 0.0001 46.0 3.7 41 214-260 2-42 (411)
468 PRK08264 short chain dehydroge 68.2 4.9 0.00011 41.5 3.5 36 210-250 4-40 (238)
469 TIGR01532 E4PD_g-proteo D-eryt 68.1 4 8.8E-05 45.2 3.0 22 214-235 1-22 (325)
470 PRK13018 cell division protein 68.1 11 0.00025 42.6 6.6 51 210-263 26-78 (378)
471 PRK08163 salicylate hydroxylas 68.1 4.4 9.6E-05 45.5 3.4 34 212-251 4-37 (396)
472 COG1023 Gnd Predicted 6-phosph 68.0 13 0.00028 39.3 6.4 118 214-346 2-122 (300)
473 TIGR00065 ftsZ cell division p 68.0 8 0.00017 43.4 5.3 53 209-264 14-68 (349)
474 COG0654 UbiH 2-polyprenyl-6-me 67.9 4.7 0.0001 45.6 3.6 33 212-250 2-34 (387)
475 PRK07588 hypothetical protein; 67.9 4.9 0.00011 45.3 3.7 32 213-250 1-32 (391)
476 PRK12779 putative bifunctional 67.7 12 0.00027 47.4 7.5 34 211-250 305-338 (944)
477 PRK06617 2-octaprenyl-6-methox 67.7 4.8 0.0001 45.2 3.6 33 213-251 2-34 (374)
478 PRK08213 gluconate 5-dehydroge 67.6 4.5 9.8E-05 42.4 3.2 34 209-248 9-43 (259)
479 PRK05565 fabG 3-ketoacyl-(acyl 67.4 5.1 0.00011 41.4 3.5 27 210-236 3-30 (247)
480 PRK06914 short chain dehydroge 67.4 13 0.00029 39.4 6.7 33 212-250 3-36 (280)
481 PRK08507 prephenate dehydrogen 67.3 5.6 0.00012 42.8 3.8 31 214-248 2-32 (275)
482 COG1249 Lpd Pyruvate/2-oxoglut 67.1 5.2 0.00011 46.5 3.7 32 212-249 173-204 (454)
483 TIGR02622 CDP_4_6_dhtase CDP-g 67.0 5 0.00011 44.5 3.5 35 210-250 2-37 (349)
484 PLN02985 squalene monooxygenas 67.0 5 0.00011 47.4 3.6 33 213-251 44-76 (514)
485 cd05294 LDH-like_MDH_nadp A la 67.0 5.3 0.00012 43.9 3.6 34 213-250 1-35 (309)
486 TIGR03325 BphB_TodD cis-2,3-di 66.8 5.2 0.00011 42.2 3.4 33 210-248 3-36 (262)
487 PRK08849 2-octaprenyl-3-methyl 66.8 4.6 0.0001 45.5 3.2 32 213-250 4-35 (384)
488 PRK07251 pyridine nucleotide-d 66.8 5.2 0.00011 46.0 3.7 33 212-250 157-189 (438)
489 PRK06901 aspartate-semialdehyd 66.7 14 0.00031 40.8 6.8 107 212-358 3-111 (322)
490 PRK08132 FAD-dependent oxidore 66.6 4.9 0.00011 47.7 3.5 34 212-251 23-56 (547)
491 PRK06834 hypothetical protein; 66.6 4.4 9.6E-05 47.5 3.1 34 212-251 3-36 (488)
492 TIGR01988 Ubi-OHases Ubiquinon 66.5 5 0.00011 44.7 3.4 33 214-252 1-33 (385)
493 KOG1208 Dehydrogenases with di 66.2 18 0.00039 39.9 7.6 61 213-298 36-97 (314)
494 PRK11064 wecC UDP-N-acetyl-D-m 66.1 5.3 0.00011 45.9 3.5 33 213-251 4-36 (415)
495 PRK06126 hypothetical protein; 66.1 5 0.00011 47.5 3.5 33 212-250 7-39 (545)
496 TIGR01745 asd_gamma aspartate- 66.0 12 0.00026 42.1 6.2 51 308-359 61-114 (366)
497 PRK09754 phenylpropionate diox 65.9 8 0.00017 43.8 4.9 43 201-249 128-175 (396)
498 PF03721 UDPG_MGDP_dh_N: UDP-g 65.8 6.2 0.00013 40.1 3.6 44 213-262 1-44 (185)
499 PRK07190 hypothetical protein; 65.8 5.1 0.00011 47.0 3.4 33 213-251 6-38 (487)
500 PRK08703 short chain dehydroge 65.6 5.8 0.00013 41.1 3.5 33 210-248 4-37 (239)
No 1
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-212 Score=1765.75 Aligned_cols=789 Identities=57% Similarity=1.004 Sum_probs=765.9
Q ss_pred CCCCCCCCcEeEEEcCCceEEEecCCCCcCCcccCcEEEEEeeeeEeecccHHHHhcCCCccccccCccCCCchhHHHHH
Q 003715 1 MTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAF 80 (800)
Q Consensus 1 m~~ln~~~~~~i~v~~~~~f~i~~dt~~~~~y~~gg~~~qvK~p~~~~f~sL~e~l~~p~~~~~~d~~k~~~~~~l~~~~ 80 (800)
|+|||||+|+||+|++||+|+| |||+.|++|..||+++|||+|++++||||.++|..| +++..||+|+.|++++|.+|
T Consensus 221 m~eLN~~~P~kI~v~~p~sf~I-gdt~~f~~y~~GGi~tQVK~Pk~isfKsL~~~L~~P-~fl~~df~k~~rp~~lH~af 298 (1013)
T KOG2012|consen 221 MTELNDCKPRKITVLGPYSFSI-GDTTEFGEYKKGGIFTQVKVPKTISFKSLREALKEP-EFLISDFAKFDRPPQLHLAF 298 (1013)
T ss_pred ccccCCCCceEEEEecCceEEe-ccccchhhhhcCceeEEeecCceEecccHHHhhcCC-CeeeeccccccccHHHHHHH
Confidence 8999999999999999999999 999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHhhcccccchhHHHhhhhHHHHHHHhhc
Q 003715 81 QALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACS 160 (800)
Q Consensus 81 ~aL~~f~~~~gr~P~~~~~~Da~~l~~i~~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~Pv~AiiGGivaQEVIKait 160 (800)
+||++|++.|||+|.|++++|+++|++++.++.+..+ ...++++++|+.|+.+++|.+.||+|++||+|||||+|++|
T Consensus 299 ~AL~~F~~~~Gr~P~p~~e~DA~~l~~l~~~i~~~~~--~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~s 376 (1013)
T KOG2012|consen 299 QALHQFQEAHGRLPRPGNEEDAEELVELARDISEGLG--LEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACS 376 (1013)
T ss_pred HHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhhhhcc--ccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhc
Confidence 9999999999999999999999999999999988763 34589999999999999999999999999999999999999
Q ss_pred CccccccccccccccccCCCC--CCCccCCCCccCcchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccC
Q 003715 161 GKFHPLLQFFYFDSVESLPSE--PLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSC 238 (800)
Q Consensus 161 ~k~~Pi~q~~~~d~~~~l~~~--~l~~~~~~~~~~Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~ 238 (800)
|||+||.||||||++|+||++ +++++++.|.++|||.||++||...|++|.+.++++||||+||||++||+|||||+|
T Consensus 377 gKF~PL~Q~lYfDale~LP~d~~~~~e~d~~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~ 456 (1013)
T KOG2012|consen 377 GKFTPLKQWLYFDALESLPSDNLPPSEEDCQPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGC 456 (1013)
T ss_pred cCccchhHheehhhHhhCCCcCCCCCHHHcccccCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeecc
Confidence 999999999999999999975 788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEc
Q 003715 239 GNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNA 318 (800)
Q Consensus 239 ~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a 318 (800)
|..|+|+++|||.||.||||||||||.+|||++|+++||+++..|||+++|+++..+++++||.+|+++||++.|+|++|
T Consensus 457 g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanA 536 (1013)
T KOG2012|consen 457 GNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANA 536 (1013)
T ss_pred CCCCceEEeccchhhhccccceeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHhhhcccccccEEEecccCcccceEEEeCCcccccCCCCCCCCCCCCCccccCCCCCcchhHHHHHhhhhh
Q 003715 319 LDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEG 398 (800)
Q Consensus 319 ~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v~~iip~~t~~y~~~~~p~~~~~p~ctl~~fP~~~~h~i~wa~~~F~~ 398 (800)
+||+.||+|++++|+.+.+||+++||+|++|++|+++|++||+|++++|||+|++|+||+++||+.|+|||+|||+.||+
T Consensus 537 LDNVdAR~YvD~RCv~~~kPLLESGTlGTKGntQVvvPhlTEsY~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~eFEg 616 (1013)
T KOG2012|consen 537 LDNVDARRYVDRRCVYYRKPLLESGTLGTKGNTQVVVPHLTESYGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARDEFEG 616 (1013)
T ss_pred hcchhhhhhhhhhhhhhccchhhccCcCCccceeEEeccccccccccCCCcccCCceeeeccCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccChhhHhhhcCChHHHHHHhhhcCchhHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 003715 399 LLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENA 478 (800)
Q Consensus 399 ~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~c~~~A~~~f~~~F~~~I~~Ll~~~p~d~ 478 (800)
+|.+.++.+|.||++|..+...++..++.+..+.|+++.+.|. .+|.+|+||++|||..|+++|+++|+|||++||+|.
T Consensus 617 ~F~~~~e~vN~yls~p~f~e~sl~~~~~~~~~~~l~~v~~~l~-~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~ 695 (1013)
T KOG2012|consen 617 LFKQSAENVNKYLSDPVFYETSLKLIGEPQSLETLERVVDCLS-ERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDA 695 (1013)
T ss_pred HhhCCHHHHHHHhcCchHHHHHHhhccCcchhHHHHHHHHHhh-cCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCccc
Confidence 9999999999999999988888898999999999999999997 999999999999999999999999999999999999
Q ss_pred cCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHHHHHHHHcCCCCCCCCCChhHHHHHhhhcCCCCCCCCCCcccccc
Q 003715 479 TTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETD 558 (800)
Q Consensus 479 ~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 558 (800)
+|++|.|||+||||||+|++||.+|++|+.||++||+|||++|||+.. .+..+++..+..+++|+|+|+++.+|.++
T Consensus 696 ~t~~G~pFWs~pKr~P~pl~Fd~n~~~hl~fv~Aaa~l~a~~~gi~~~---~d~~~~~~~~~~v~~p~f~P~~~~~i~~~ 772 (1013)
T KOG2012|consen 696 KTSDGAPFWSGPKRCPRPLEFDVNDPLHLNFVQAAANLRAEVYGIPGS---QDREALAELLERVIVPEFEPKQKVKIVVE 772 (1013)
T ss_pred ccCCCCcCCCCCCCCCCceeecCCCchhHHHHHHHHHHHHHhcCCCcc---cCHHHhhhhHhhcCCCccccccCCeeccc
Confidence 999999999999999999999999999999999999999999999984 56779999999999999999999999999
Q ss_pred ccccccCCCCCCcHHHHHHHHHHHHHhhhcCCCCCCCCCccccccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHh
Q 003715 559 EKATSMSTGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIA 638 (800)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFV~AasNLRA~ny~I~~~~~~~~K~iA 638 (800)
+.+......+.++...+++|...++.+... .++++.|+.||||||+|+|||||+|||||||.||+||++||+++|+||
T Consensus 773 ~~~~~~~~~s~d~~~~i~~l~~~l~~~~~~--~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~K~Ia 850 (1013)
T KOG2012|consen 773 EAELAASSASVDDSAAIDQLNKALPSPSVL--PSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKTKRIA 850 (1013)
T ss_pred ccccccccccCCchHHHHHHhhcccccccC--CCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhhheee
Confidence 988887777788888999999998887764 447899999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHhhCCCCcccccccccccccccccccCCCCCccccc-CCCcceEEEEEEeCCCCcH
Q 003715 639 GRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKH-QDMSWTVWDRWILRDNPTL 717 (800)
Q Consensus 639 G~IIPAIaTTtA~VaGl~~lEl~K~l~~~~~~~~~rn~f~nla~p~~~~~eP~~~~~~~~-~~~~~t~wdr~~v~~~~TL 717 (800)
|+||||||||||+|+||+|+|+||++.|+.+++.|||+|+|||+|+|+++||.++++..+ .+.+||+||||++.+++||
T Consensus 851 GkIIPAIATtTa~v~Glv~LElyKv~~G~~~~e~~Kn~flnLAlp~f~~~ep~~~pk~~~~~~~~~tlWdR~~v~g~~tL 930 (1013)
T KOG2012|consen 851 GKIIPAIATTTAAVSGLVCLELYKVVDGKRPVEAYKNTFLNLALPFFSFAEPLAAPKVQYHNDLSWTLWDRWEVKGEPTL 930 (1013)
T ss_pred eeEEEEEeehhHHHHHHHHhhhhhhccCCCchHHhhhhhhcccccceeecccCCCcceeeecccceeeeEEEEecCCCCH
Confidence 999999999999999999999999999988999999999999999999999999888766 5559999999999999999
Q ss_pred HHHHHHHHHc-CCceeeeecCCceeeccCCcchhhcccCcHHHHHHhhhcCCCCCCeeEEEEEEEeecCCCCccccCeEE
Q 003715 718 RQLLQWLQDK-GLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQIS 796 (800)
Q Consensus 718 ~~li~~~~~~-~l~~~~i~~g~~~lY~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~l~l~~~~~d~~~~dv~~P~v~ 796 (800)
++|+++++++ |++++||++|+++||+++||++++||+++++||++.++|+++|++++.|+|+++|+|+||+|+++|+||
T Consensus 931 ~~~L~~~~~~~gl~i~mls~G~~lly~~~~~k~~erl~~~v~elv~~~~k~~~~~~~~~lvle~~~~d~~~eDve~P~v~ 1010 (1013)
T KOG2012|consen 931 REFLDHLEEQHGLEITMLSQGVSLLYASFMPKHAERLPLRVTELVRDVTKKKLPPHVRHLVLEVACEDDDDEDVEVPPVR 1010 (1013)
T ss_pred HHHHHHHhhhcCceEEEEeccceeehhhhhhHHHHhcCCcHHHHHHHHhcccCCCcceEEEEEEecCCCCCCcCCCCceE
Confidence 9999999989 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEe
Q 003715 797 IYF 799 (800)
Q Consensus 797 ~~~ 799 (800)
|+|
T Consensus 1011 y~f 1013 (1013)
T KOG2012|consen 1011 YYF 1013 (1013)
T ss_pred EeC
Confidence 986
No 2
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=3.9e-192 Score=1724.65 Aligned_cols=796 Identities=50% Similarity=0.859 Sum_probs=756.3
Q ss_pred CCCCCCCCcEeEEEcCCceEEEecCCCCcCCcccCcEEEEEeeeeEeecccHHHHhcCCCccccccCccCCCchhHHHHH
Q 003715 1 MTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAF 80 (800)
Q Consensus 1 m~~ln~~~~~~i~v~~~~~f~i~~dt~~~~~y~~gg~~~qvK~p~~~~f~sL~e~l~~p~~~~~~d~~k~~~~~~l~~~~ 80 (800)
|+|||+++|++|+|++||+|+| |||++|++|++||+++|||+|++++|+||+++|..| +++.+|++|++|++++|++|
T Consensus 210 m~~lN~~~~~~i~~~~~~~f~i-~dt~~~~~y~~gG~~~qvK~p~~~~Fksl~~~l~~p-~~~~~d~~k~~r~~~lh~~~ 287 (1008)
T TIGR01408 210 MTGLNDGSPRKITVISPYSFSI-GDTTELGPYLHGGIATQVKTPKTVFFKSLREQLKDP-KCLIVDFSKPERPPEIHTAF 287 (1008)
T ss_pred ccccCCCCceeEEecCCceEEe-ccccccchhhcCceEEEEeccccccccCHHHHHcCC-cccccchhhcCCchhHHHHH
Confidence 8999999999999999999999 999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHhhcccccchhHHHhhhhHHHHHHHhhc
Q 003715 81 QALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACS 160 (800)
Q Consensus 81 ~aL~~f~~~~gr~P~~~~~~Da~~l~~i~~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~Pv~AiiGGivaQEVIKait 160 (800)
+||++|+++|||+|.+++.+|++++++++++++++.+ ...+++++++++.|+++++++++||||++||++||||||+||
T Consensus 288 ~aL~~f~~~~g~~P~~~~~~d~~~~~~~a~~i~~~~~-~~~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKais 366 (1008)
T TIGR01408 288 QALDQFQEKYSRKPNVGCQQDAEELLKLATSISETLE-EKVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVT 366 (1008)
T ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhc
Confidence 9999999999999999999999999999999988764 223569999999999999999999999999999999999999
Q ss_pred CccccccccccccccccCCCC-CCCccCCCCccCcchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCC
Q 003715 161 GKFHPLLQFFYFDSVESLPSE-PLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCG 239 (800)
Q Consensus 161 ~k~~Pi~q~~~~d~~~~l~~~-~l~~~~~~~~~~Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~ 239 (800)
|||+||+||||||++++||+. .+.++++.+.++|||||+++||.++|++|++++|+||||||+|||++|+||++||+||
T Consensus 367 gKf~Pi~q~~~~D~~e~l~~~~~~~~~~~~~~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~ 446 (1008)
T TIGR01408 367 GKFSPLCQWFYFDSAESLPSLGKPECEEFLPRGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTG 446 (1008)
T ss_pred CCCCCceeeEEeehhhhCCcccCcchhhccchhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcC
Confidence 999999999999999999975 3455577788999999999999999999999999999999999999999999999999
Q ss_pred CCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEcc
Q 003715 240 NQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNAL 319 (800)
Q Consensus 240 ~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~ 319 (800)
+.|+|+|+|+|+||.|||||||||+.+|||++||++|+++++++||+++|+++..++.++++++++++||+++|+|++|+
T Consensus 447 ~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~al 526 (1008)
T TIGR01408 447 KKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINAL 526 (1008)
T ss_pred CCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999998888888889999999999999
Q ss_pred CCHHHHHHHhhhcccccccEEEecccCcccceEEEeCCcccccCCCCCCCCCCCCCccccCCCCCcchhHHHHHhhhhhh
Q 003715 320 DNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGL 399 (800)
Q Consensus 320 Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v~~iip~~t~~y~~~~~p~~~~~p~ctl~~fP~~~~h~i~wa~~~F~~~ 399 (800)
||.++|++++++|+.+++|+|++|+.|++|++++++|+.|+||+|+++|+++++|+|||++||+.++|||+|||++|+++
T Consensus 527 Dn~~aR~~vn~~c~~~~iPli~~gt~G~~G~v~v~ip~~te~y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~ 606 (1008)
T TIGR01408 527 DNVEARRYVDSRCLAFLKPLLESGTLGTKGNTQVVVPHLTESYGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGL 606 (1008)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccCceeeEEEEeCCCcCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccChhhHhhhcCChHHHHHHhhhcCchhHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 003715 400 LEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENAT 479 (800)
Q Consensus 400 F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~c~~~A~~~f~~~F~~~I~~Ll~~~p~d~~ 479 (800)
|+..++++|+|+++|..|.+.+...+..+..+.|+.+++.|...+|.+|++|++|||.+|+++|+++|+|||++||+|++
T Consensus 607 F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~p~~~~~cv~~a~~~f~~~F~~~I~qLl~~fP~d~~ 686 (1008)
T TIGR01408 607 FSHKPSLVNKYLSSPSSAEEVLQKIQSGHSREGLEQIIKLLSKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIR 686 (1008)
T ss_pred HHhhHHHHHHHhhChHHHHHHHHhcCchhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 99999999999999999998888777777778999999999889999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCCCCCCccccCCCchhhHHHHHHHHHHHHHHcCCCCCCCCCChhHHHHHhhhcCCCCCCCCCCccccccc
Q 003715 480 TSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDE 559 (800)
Q Consensus 480 ~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 559 (800)
|++|+||||||||||+||+||.+|++|++||.+||+|||.+|||+.+.+..+.+.++++++++.+|+|+|++++++..+|
T Consensus 687 ~~~G~~fWs~~kr~P~pl~Fd~~~~~h~~Fi~aaanL~A~~ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~~~i~~~~ 766 (1008)
T TIGR01408 687 TSTGSPFWSSPKRPPSPLKFDLNEPLHLSFIQAAAKLYATVYGIPFAEEDLSADALLNILSEVKIPEFKPRSNKKIQTDE 766 (1008)
T ss_pred ccCCCccccCCCCCCCceeeCCCCHHHHHHHHHHHHHHHHHhCCCCccccchHHHHHHHHhcCCCCCCCCCcCceeecCh
Confidence 99999999999999999999999999999999999999999999987544555899999999999999999999999998
Q ss_pred cccccCCCCCCcHHHHHHHHHHHHHhhhcCCCCCCCCCccccccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhc
Q 003715 560 KATSMSTGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAG 639 (800)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFV~AasNLRA~ny~I~~~~~~~~K~iAG 639 (800)
++.+.+....++.+.++.|.++|...... ..+.++.|++||||||+|+|||||+|||||||+||+||++|||++|+|||
T Consensus 767 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~p~~FeKDDd~n~HidFI~AasNLRA~nY~I~~~d~~~~K~iAG 845 (1008)
T TIGR01408 767 TARKPDTAPEDDRNAIFQLEKAILSNEAT-KSDFRMAPLSFEKDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAG 845 (1008)
T ss_pred hhhcccccccchHHHHHHHHHHhhccccc-cCCCCCCceeeccCCCcchHHHHHHHHHhhHHHhcCCCcccHHHHHHHhc
Confidence 77655443334566778888888766542 12367999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHhhCCCCcccccccccccccccccccCCCCCcccccCCCcc-eEEEEEEeCCCCcHH
Q 003715 640 RIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSW-TVWDRWILRDNPTLR 718 (800)
Q Consensus 640 ~IIPAIaTTtA~VaGl~~lEl~K~l~~~~~~~~~rn~f~nla~p~~~~~eP~~~~~~~~~~~~~-t~wdr~~v~~~~TL~ 718 (800)
|||||||||||+||||||+|+||++++..+++.|||+|+|||+|++.|+||.||++.++.+..| |+||||++.+++||+
T Consensus 846 ~IIPAiATTTA~vaGLv~lEl~Kv~~~~~~i~~~kn~f~nlalp~~~~seP~~~~~~~~~~~~~~t~WDr~~i~~~~Tl~ 925 (1008)
T TIGR01408 846 KIIPAIATSTATVSGLVCLELIKVTDGGYKFEVYKNCFLNLAIPLFVFTEPTEVRKTKIRNGISFTIWDRWTLHGDFTLL 925 (1008)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHhccccHHHHhHHHHhhccccccccCCCCCCceeecCceeccceEEEEecCCCcHH
Confidence 9999999999999999999999999997789999999999999999999999999999888899 999999999899999
Q ss_pred HHHHHHHHc-CCceeeeecCCceeeccCCcchhhcccCcHHHHHHhhhcCCCCCCeeEEEEEEEeecCCCCccccCeEEE
Q 003715 719 QLLQWLQDK-GLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISI 797 (800)
Q Consensus 719 ~li~~~~~~-~l~~~~i~~g~~~lY~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~l~l~~~~~d~~~~dv~~P~v~~ 797 (800)
+|+++|+++ |+++.||+.|+++||+++++++++||+++|+||+++++|+++|++++||+|+++|+|+||+||++|+|+|
T Consensus 926 ~~i~~~~~~~~~~v~~is~g~~~lY~~~~~~~~erl~~~l~el~~~~~k~~~~~~~~~l~~~~~~~d~~~~dv~~P~v~~ 1005 (1008)
T TIGR01408 926 EFINAVKEKYGLEPTMVSQGVKLLYVPVMPGHAERLKLKMHKLVKPTTKKKLPPYRVHLTVSFACDDDGDEDVPGPPVRI 1005 (1008)
T ss_pred HHHHHHHHHhCCeeEEEEcCceEEEeccchhhHHhcCCCHHHHHHHhccCCCCCCceEEEEEEEeecCCCCcccCCeEEE
Confidence 999999999 9999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred EeC
Q 003715 798 YFS 800 (800)
Q Consensus 798 ~~~ 800 (800)
+||
T Consensus 1006 ~~~ 1008 (1008)
T TIGR01408 1006 YFS 1008 (1008)
T ss_pred EeC
Confidence 986
No 3
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=5.2e-122 Score=1021.90 Aligned_cols=430 Identities=59% Similarity=1.058 Sum_probs=413.4
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEee
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 293 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~ 293 (800)
||+||||||+|||++|+||++||++|+.|+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEEEeCCcccccCCCCCCCCCCC
Q 003715 294 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 373 (800)
Q Consensus 294 ~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v~~iip~~t~~y~~~~~p~~~~~ 373 (800)
.+++++++.+++++||+++|+|++|+||+++|++++++|+.+++|+|++|+.|++|++++++|+.|+||+|..+|+++++
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p~~~~~ 160 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSI 160 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCCCCCCCC
Confidence 99998888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCcchhHHHHHhhhhhhhccChhhHhhhcCChHHHHHHhhhcCchhHHHHHHHHHHHhhhhcccchhHHHH
Q 003715 374 PMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCIT 453 (800)
Q Consensus 374 p~ctl~~fP~~~~h~i~wa~~~F~~~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~c~~ 453 (800)
|+||+++||+.++|||+|||++|+++|+..++++|+|+ |++|++
T Consensus 161 P~Ctl~~~P~~~eHcI~wA~~~F~~lF~~~~~~~~~~~------------------------------------~~~c~~ 204 (435)
T cd01490 161 PLCTLKNFPNAIEHTIQWARDEFEGLFKQPPENVNQYL------------------------------------FEDCVR 204 (435)
T ss_pred CCccccCCCCCchHHHHHHHHHHHHHhccchHHHHHhh------------------------------------HHHHHH
Confidence 99999999999999999999999999998887665543 678999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHHHHHHHHcCCCCCCCCCChh
Q 003715 454 WARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPV 533 (800)
Q Consensus 454 ~A~~~f~~~F~~~I~~Ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~ 533 (800)
||+.+|+++|+++|+|||++||+|+++++|++||+|+||+|+|++||.+|++|+.||.++|+|+|.+||++
T Consensus 205 ~a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~--------- 275 (435)
T cd01490 205 WARLLFEKYFNNNIKQLLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDFVLAAANLYAEVYGIP--------- 275 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred HHHHHhhhcCCCCCCCCCCccccccccccccCCCCCCcHHHHHHHHHHHHHhhhcCCCCCCCCCccccccCCCCchhHHH
Q 003715 534 KLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLI 613 (800)
Q Consensus 534 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFV 613 (800)
.||||||+|+|||||
T Consensus 276 -----------------------------------------------------------------~FeKDdd~n~h~~fi 290 (435)
T cd01490 276 -----------------------------------------------------------------GFEKDDDTNFHMDFI 290 (435)
T ss_pred -----------------------------------------------------------------ccccCCchhHHHHHH
Confidence 099999999999999
Q ss_pred HHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhhCCCCcccccccccccccccccccCCCCC
Q 003715 614 AGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPP 693 (800)
Q Consensus 614 ~AasNLRA~ny~I~~~~~~~~K~iAG~IIPAIaTTtA~VaGl~~lEl~K~l~~~~~~~~~rn~f~nla~p~~~~~eP~~~ 693 (800)
+|||||||+||+|+++||+++|+||||||||||||||+||||+|+|+||+++++.+++.|||+|+|||+|++.++||.+|
T Consensus 291 ~a~snlRa~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~~~~~~~~~~~~n~~~nla~p~~~~~~p~~~ 370 (435)
T cd01490 291 TAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVVDGKRPLEAYKNAFLNLALPFFAFSEPIPA 370 (435)
T ss_pred HHhhhhHHHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHhCCccHHHcchHhhhccCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999878999999999999999999999999
Q ss_pred ccccc-CCCcceEEEEEEeCCCCcHHHHH-HHHHHc-CCceeeeecCCceeeccCCcc--hhhcc
Q 003715 694 KVFKH-QDMSWTVWDRWILRDNPTLRQLL-QWLQDK-GLNAYSISYGSCLLFNSMFPR--HKERM 753 (800)
Q Consensus 694 ~~~~~-~~~~~t~wdr~~v~~~~TL~~li-~~~~~~-~l~~~~i~~g~~~lY~~~~~~--~~~~l 753 (800)
++.++ .+.+||+||||+|++++||++|+ ++|+++ |++++||++|+++||++|||. +++||
T Consensus 371 ~~~~~~~~~~~t~Wdr~~v~~~~t~~~~~~~~~~~~~~~~v~~i~~g~~~ly~~~~~~~~~~~r~ 435 (435)
T cd01490 371 PKVKYAYDEEWTIWDRFEVKGKQTLQELLIDYFKEKYGLEVTMLSQGVSMLYSSFMPPAKLKERL 435 (435)
T ss_pred CccccCCCCEEeeEeEEEEcCCCcHHHHHHHHHHHHhCCeEEEEEeCCeEEEeecCCchhhhhcC
Confidence 99987 77889999999999999999999 999999 999999999999999999873 34553
No 4
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-81 Score=674.33 Aligned_cols=477 Identities=30% Similarity=0.459 Sum_probs=345.1
Q ss_pred HHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHH
Q 003715 204 SKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALI 283 (800)
Q Consensus 204 ~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~ 283 (800)
.+.++.+.++|||||||||||||++|+|+++|+ ++|+|||.|+|+.|||||||||+.+|||++||.+|++.++++
T Consensus 4 ~~~~eai~~~riLvVGaGGIGCELLKnLal~gf-----~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~F 78 (603)
T KOG2013|consen 4 REKHEAIKSGRILVVGAGGIGCELLKNLALTGF-----EEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQF 78 (603)
T ss_pred HHHHHHhccCeEEEEecCcccHHHHHHHHHhcC-----CeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHh
Confidence 355788899999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEEEeCCcccccC
Q 003715 284 NPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYG 363 (800)
Q Consensus 284 np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v~~iip~~t~~y~ 363 (800)
||++++.+|+..+... -|+.+|+++||+|++|+||.+||+|+|++|...++|||+||+.|+.||+++++++.||||.
T Consensus 79 npn~~l~~yhanI~e~---~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECye 155 (603)
T KOG2013|consen 79 NPNIKLVPYHANIKEP---KFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYE 155 (603)
T ss_pred CCCCceEeccccccCc---chHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceec
Confidence 9999999999988743 3667899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccccCCCCCcchhHHHHHh-hhhhhhccChhhH--hhhcCChHHHHHHh-hhcCchhHHHHHHHHHHH
Q 003715 364 ASRDPPEKQAPMCTVHSFPHNIDHCLTWARS-EFEGLLEKTPAEV--NAYLTSPTEYASAM-KNAGDAQARDNLDRVLEC 439 (800)
Q Consensus 364 ~~~~p~~~~~p~ctl~~fP~~~~h~i~wa~~-~F~~~F~~~~~~~--~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 439 (800)
|.+.|.++.+|+||+++.|+.++|||.|||+ +|.++|+.....- +-.-.||+.-.... ....-....+-+...+.
T Consensus 156 C~pK~~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er~~- 234 (603)
T KOG2013|consen 156 CIPKPVPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKERRE- 234 (603)
T ss_pred ccCCCCCCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccchHHHHHHH-
Confidence 9999999999999999999999999999995 6999998743321 00111222111100 00000000000111011
Q ss_pred hhhhcccchhHHHHHH-------HHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCccccCCCchhhHHHHHH
Q 003715 440 LDKERCETFQDCITWA-------RLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMA 512 (800)
Q Consensus 440 l~~~~~~~~~~c~~~A-------~~~f~~~F~~~I~~Ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~ 512 (800)
.-++|. ..+|.++|.+||+.||. ++..|.. +++|.||.|...-..
T Consensus 235 ----------~i~~~~~~~~~~~~~i~~klF~~dI~yl~~----------~e~~wk~-r~~p~pl~~~~~i~~------- 286 (603)
T KOG2013|consen 235 ----------SIVEIDKNLDFGPFKIFNKLFIYDIEYLLG----------MEALWKP-RSRPVPLSIAEVIST------- 286 (603)
T ss_pred ----------HHHHHhhccCCChhhhhhHHHHHHHHHHHh----------hhhhccC-CCCCCCcchhhccCC-------
Confidence 112222 45789999999999995 4788995 778999998654211
Q ss_pred HHHHHHHHcCCCCCCCCCChhHHHHHhhhcCCCCCCCCCCccccccccccccCCCCCCcHHHHHHHHHHHHHhhhcCCCC
Q 003715 513 ASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPTG 592 (800)
Q Consensus 513 ~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 592 (800)
+.+ .+..+++.+ + .+.. .+.+-|...+ ....+..-++.|.- ..+..
T Consensus 287 ---------~~~---------t~ns~~q~~--~--~a~~-----~~~~v~~v~~----~~~vf~~~i~~l~~---~~~~~ 332 (603)
T KOG2013|consen 287 ---------SLE---------TINSIVQSI--T--SAQL-----NDQNVWTVDE----GAVVFRLSIQALDL---RCPKE 332 (603)
T ss_pred ---------ccc---------cccchhhhc--c--cccc-----CCcceeeecc----ccHHHHHHHHHhcc---cCCcc
Confidence 000 000011000 0 0000 0111111111 11122222222211 11111
Q ss_pred CCCCCccccccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhhCCCCccc
Q 003715 593 YKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLED 672 (800)
Q Consensus 593 ~~~~p~~FeKDDd~n~hidFV~AasNLRA~ny~I~~~~~~~~K~iAG~IIPAIaTTtA~VaGl~~lEl~K~l~~~~~~~~ 672 (800)
..--.+.|||||.+ .|+||+||||+||+.|+||..+.|++|.||||||||||||||+|||++|+|.+|+|++ ++..
T Consensus 333 ~~h~~l~fdKdd~~--~~~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtTNAiIagliv~eaiKvl~~--~~~~ 408 (603)
T KOG2013|consen 333 SDHWYLIFDKDDAS--TMEFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTEAIKVLGG--DFDD 408 (603)
T ss_pred CCCceEEEcCCcHH--HHHHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhhhhHHHHHHHHHHHHHhcc--chhc
Confidence 22334899999988 9999999999999999999999999999999999999999999999999999999976 4788
Q ss_pred ccccccccccc----cccccCCCCCcccccCCCcceEEEEEEeC-CCCcHHHHHHHH-HHc-CCceeeee-cCCceeecc
Q 003715 673 YRNTFANLALP----LFSMAEPVPPKVFKHQDMSWTVWDRWILR-DNPTLRQLLQWL-QDK-GLNAYSIS-YGSCLLFNS 744 (800)
Q Consensus 673 ~rn~f~nla~p----~~~~~eP~~~~~~~~~~~~~t~wdr~~v~-~~~TL~~li~~~-~~~-~l~~~~i~-~g~~~lY~~ 744 (800)
++++|.+-... ......+.||++.|+.+.+.. -.+++. ..+||.+|+|.+ +.+ ++ .+.++ ....++|+
T Consensus 409 ~~~~f~~~~~n~r~r~l~~~~~~~PNp~C~vCs~~~--~~l~ln~~~~~~~~L~D~ivk~r~~~-~pdvsll~~~Li~~- 484 (603)
T KOG2013|consen 409 CNMIFLAKRPNPRKRVLLPWALRPPNPNCPVCSEVP--LVLELNTRKSTLRDLVDKIVKTRLGY-LPDVSLLDDDLIDD- 484 (603)
T ss_pred ceeeEEccCCCccceeecccccCCCCCCCccccccc--eEEEeccccchHHHHHHHHHHHHhcc-Ccccchhhhhhccc-
Confidence 88888764433 122223344444443322222 334553 479999999986 566 77 44433 12344554
Q ss_pred CCcchhhcccCcHHHHH
Q 003715 745 MFPRHKERMDKKVVDLV 761 (800)
Q Consensus 745 ~~~~~~~~l~~~l~~l~ 761 (800)
+..+++|+|+|+||.
T Consensus 485 --~d~e~n~~k~lsel~ 499 (603)
T KOG2013|consen 485 --MDFEDNLDKTLSELG 499 (603)
T ss_pred --ccchhhhhhhHHhhC
Confidence 367899999999994
No 5
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=8.8e-77 Score=638.58 Aligned_cols=306 Identities=40% Similarity=0.652 Sum_probs=283.3
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEee
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 293 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~ 293 (800)
||+||||||+|||++|||+++|| |+|+|+|+|.||.|||+|||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-----g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~ 75 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-----GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYH 75 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-----CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEEEeCCcccccCCCCCCCCCCC
Q 003715 294 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 373 (800)
Q Consensus 294 ~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v~~iip~~t~~y~~~~~p~~~~~ 373 (800)
..+.+. .++.+||+++|+||+|+|+.++|++++++|+.+++|+|++|+.|+.|++++++|+.|+||.|..+++++++
T Consensus 76 ~~i~~~---~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~ 152 (312)
T cd01489 76 ANIKDP---DFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTF 152 (312)
T ss_pred ccCCCc---cchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcC
Confidence 888752 34568999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred CCccccCCCCCcchhHHHHHhhhhhhhccChhhHhhhcCChHHHHHHhhhcCchhHHHHHHHHHHHhhhhcccchhHHHH
Q 003715 374 PMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCIT 453 (800)
Q Consensus 374 p~ctl~~fP~~~~h~i~wa~~~F~~~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~c~~ 453 (800)
|.||++++|+.++|||+|||++|+
T Consensus 153 pictI~~~p~~~~hci~~a~~~f~-------------------------------------------------------- 176 (312)
T cd01489 153 PVCTIRSTPSQPIHCIVWAKSLFF-------------------------------------------------------- 176 (312)
T ss_pred CcceecCCCCCCEeehhHHHHHHH--------------------------------------------------------
Confidence 999999999999999999999874
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHHHHHHHHcCCCCCCCCCChh
Q 003715 454 WARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPV 533 (800)
Q Consensus 454 ~A~~~f~~~F~~~I~~Ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~ 533 (800)
+|+++|+++|+||+++ ++||+++| +|+|++|+.
T Consensus 177 ----~~~~~f~~~i~~l~~~----------~~~w~~~~-~p~p~~~~~-------------------------------- 209 (312)
T cd01489 177 ----LFNKVFKDDIERLLSM----------EELWKTRK-PPVPLSWKE-------------------------------- 209 (312)
T ss_pred ----HHHHHHHHHHHHHHhh----------hhhhcCCC-CCCCCCCCC--------------------------------
Confidence 5889999999999975 79999977 999987652
Q ss_pred HHHHHhhhcCCCCCCCCCCccccccccccccCCCCCCcHHHHHHHHHHHHHhhhcCCCCCCCCCccccccCCCCchhHHH
Q 003715 534 KLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLI 613 (800)
Q Consensus 534 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFV 613 (800)
++||||||+ ||+||
T Consensus 210 ----------------------------------------------------------------~~fdkDd~~--~~~~v 223 (312)
T cd01489 210 ----------------------------------------------------------------LTFDKDDQD--ALDFV 223 (312)
T ss_pred ----------------------------------------------------------------cCcCCCCHH--HHHHH
Confidence 249999998 99999
Q ss_pred HHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhhCCCCcccccccccccccc----cccccC
Q 003715 614 AGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALP----LFSMAE 689 (800)
Q Consensus 614 ~AasNLRA~ny~I~~~~~~~~K~iAG~IIPAIaTTtA~VaGl~~lEl~K~l~~~~~~~~~rn~f~nla~p----~~~~~e 689 (800)
+|+|||||+||+|+..|++++|+||||||||||||||+||||+++|++|++.+. .+.||++|+||.-+ ++...+
T Consensus 224 ~~~a~lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 301 (312)
T cd01489 224 AAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGD--KEQCRTVFLNLQPNRRKRLLVPCK 301 (312)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhh--HHHhhhHhhhcccCCCCcEecCCC
Confidence 999999999999999999999999999999999999999999999999999974 68999999997633 466677
Q ss_pred CCCCccccc
Q 003715 690 PVPPKVFKH 698 (800)
Q Consensus 690 P~~~~~~~~ 698 (800)
|.+|.+.|+
T Consensus 302 ~~~~n~~c~ 310 (312)
T cd01489 302 LDPPNPNCY 310 (312)
T ss_pred CCCcCCCCC
Confidence 777776654
No 6
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=1.3e-63 Score=518.32 Aligned_cols=176 Identities=48% Similarity=0.807 Sum_probs=168.1
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEee
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 293 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~ 293 (800)
||+|||+||+|||++|+|+++|| |+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv-----g~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~ 75 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF-----GQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQ 75 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEEEeCCcccccCCCCCCCCCCC
Q 003715 294 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 373 (800)
Q Consensus 294 ~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v~~iip~~t~~y~~~~~p~~~~~ 373 (800)
.++.++ ..++++|++++|+||+|+||.++|+++++.|+.+++|+|++|+.|++|++++++|+.|+||.|..+|+++++
T Consensus 76 ~~i~~~--~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~ 153 (234)
T cd01484 76 NKVGPE--QDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNF 153 (234)
T ss_pred ccCChh--hhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCC
Confidence 988643 335678999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred CCccccCCCCCcchhHHHHHhhh
Q 003715 374 PMCTVHSFPHNIDHCLTWARSEF 396 (800)
Q Consensus 374 p~ctl~~fP~~~~h~i~wa~~~F 396 (800)
|.||+++||+.|+|||+||+++|
T Consensus 154 p~Cti~~~P~~~~hci~~a~~~~ 176 (234)
T cd01484 154 PMCTIASMPRLPEHCIEWARMLQ 176 (234)
T ss_pred CccccCCCCCCchHHHHHHHHHH
Confidence 99999999999999999999853
No 7
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=2.1e-58 Score=491.23 Aligned_cols=249 Identities=33% Similarity=0.581 Sum_probs=226.4
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEee
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 293 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~ 293 (800)
||+||||||+|||++|+|+++|| |+|+|+|+|+||.|||||||||+.+|||++||++|+++++++||+++|+++.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv-----g~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~ 75 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF-----RNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHF 75 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccc--------cccEEEecccCcccceEEEeCCcccccCCC
Q 003715 294 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF--------QKPLLESGTLGAKCNTQMVIPHLTENYGAS 365 (800)
Q Consensus 294 ~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~--------~~pli~sg~~G~~G~v~~iip~~t~~y~~~ 365 (800)
.++.+ ++.+|++++|+||+|+||.++|+++++.|... ++|+|++|+.|++|++++++|+.|+||.|.
T Consensus 76 ~~i~~-----~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~ 150 (291)
T cd01488 76 GKIQD-----KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECS 150 (291)
T ss_pred cccCc-----hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccC
Confidence 88874 24579999999999999999999999988654 499999999999999999999999999998
Q ss_pred CC--CCCCCCCCccccCCCCCcchhHHHHHhhhhhhhccChhhHhhhcCChHHHHHHhhhcCchhHHHHHHHHHHHhhhh
Q 003715 366 RD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKE 443 (800)
Q Consensus 366 ~~--p~~~~~p~ctl~~fP~~~~h~i~wa~~~F~~~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 443 (800)
.+ |+++.+|+||++++|+.++|||+||+.+
T Consensus 151 ~d~~p~~~~~p~Cti~~~P~~~~hci~~a~~~------------------------------------------------ 182 (291)
T cd01488 151 LDLFPPQVTFPLCTIANTPRLPEHCIEYASLI------------------------------------------------ 182 (291)
T ss_pred CCCCCCCCCCCcccccCCCCCcchheeeeeee------------------------------------------------
Confidence 76 6777999999999999999999998873
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHHHHHHHHcCC
Q 003715 444 RCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGI 523 (800)
Q Consensus 444 ~~~~~~~c~~~A~~~f~~~F~~~I~~Ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i 523 (800)
. |+..+ |.
T Consensus 183 ---------~---------------------------------~~~~~--~~---------------------------- 190 (291)
T cd01488 183 ---------Q---------------------------------WPKEF--PF---------------------------- 190 (291)
T ss_pred ---------e---------------------------------ccccc--CC----------------------------
Confidence 0 11100 00
Q ss_pred CCCCCCCChhHHHHHhhhcCCCCCCCCCCccccccccccccCCCCCCcHHHHHHHHHHHHHhhhcCCCCCCCCCcccccc
Q 003715 524 PIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKD 603 (800)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKD 603 (800)
..||+|
T Consensus 191 --------------------------------------------------------------------------~~~~~d 196 (291)
T cd01488 191 --------------------------------------------------------------------------VPLDGD 196 (291)
T ss_pred --------------------------------------------------------------------------CcCCCC
Confidence 126677
Q ss_pred CCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhhCCC
Q 003715 604 DDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGH 668 (800)
Q Consensus 604 Dd~n~hidFV~AasNLRA~ny~I~~~~~~~~K~iAG~IIPAIaTTtA~VaGl~~lEl~K~l~~~~ 668 (800)
|+. ||+||+..|+.||.+|+|+..++..+++++||||||||||||+|||+++.|++|++.+..
T Consensus 197 ~~~--~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~ 259 (291)
T cd01488 197 DPE--HIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCY 259 (291)
T ss_pred CHH--HHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccc
Confidence 765 999999999999999999999999999999999999999999999999999999999754
No 8
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-58 Score=472.82 Aligned_cols=345 Identities=27% Similarity=0.475 Sum_probs=279.4
Q ss_pred CHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHH
Q 003715 203 GSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAAL 282 (800)
Q Consensus 203 G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~ 282 (800)
+.+..+.|.+.+|+|+||||+|||++|||+++|+ +.+++||||+||.|||||||||+++|||++||++||+.+++
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF-----~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~ 105 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGF-----RQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNR 105 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhcc-----ceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHh
Confidence 5778889999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccc---c-------ccEEEecccCcccceE
Q 003715 283 INPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF---Q-------KPLLESGTLGAKCNTQ 352 (800)
Q Consensus 283 ~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~---~-------~pli~sg~~G~~G~v~ 352 (800)
..|+..|.+|..++.+ ++.+|+++|++||+++|++++|+++|.+.++. + +|+|++|+.|++|++.
T Consensus 106 Rvp~~~v~~h~~kIqd-----~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~ar 180 (422)
T KOG2015|consen 106 RVPGCVVVPHRQKIQD-----KPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHAR 180 (422)
T ss_pred hCCCcEEeeeecchhc-----CCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeE
Confidence 9999999999998874 44689999999999999999999999876542 2 6999999999999999
Q ss_pred EEeCCcccccCCCCC--CCCCCCCCccccCCCCCcchhHHHHHhhhhhhhccChhhHhhhcCChHHHHHHhhhcCchhHH
Q 003715 353 MVIPHLTENYGASRD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQAR 430 (800)
Q Consensus 353 ~iip~~t~~y~~~~~--p~~~~~p~ctl~~fP~~~~h~i~wa~~~F~~~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 430 (800)
+|+|+.|.|+.|+.| |++.++|+||+.+.|..|||||+|++-+
T Consensus 181 vI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~li----------------------------------- 225 (422)
T KOG2015|consen 181 VIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLI----------------------------------- 225 (422)
T ss_pred EEecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhh-----------------------------------
Confidence 999999999999876 7777899999999999999999986542
Q ss_pred HHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCccccCCCchhhHHHH
Q 003715 431 DNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFL 510 (800)
Q Consensus 431 ~~l~~~~~~l~~~~~~~~~~c~~~A~~~f~~~F~~~I~~Ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi 510 (800)
+|- +-.|--..
T Consensus 226 ----------------------qwp-----------------------------------e~~~~g~~------------ 236 (422)
T KOG2015|consen 226 ----------------------QWP-----------------------------------ELNPFGVP------------ 236 (422)
T ss_pred ----------------------cch-----------------------------------hhCccCCC------------
Confidence 221 10110111
Q ss_pred HHHHHHHHHHcCCCCCCCCCChhHHHHHhhhcCCCCCCCCCCccccccccccccCCCCCCcHHHHHHHHHHHHHhhhcCC
Q 003715 511 MAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLP 590 (800)
Q Consensus 511 ~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 590 (800)
T Consensus 237 -------------------------------------------------------------------------------- 236 (422)
T KOG2015|consen 237 -------------------------------------------------------------------------------- 236 (422)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccccccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhhCCCCc
Q 003715 591 TGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKL 670 (800)
Q Consensus 591 ~~~~~~p~~FeKDDd~n~hidFV~AasNLRA~ny~I~~~~~~~~K~iAG~IIPAIaTTtA~VaGl~~lEl~K~l~~~~~~ 670 (800)
++-||.. ||+||.--+|.||.-|+|+..++..+.++..+||||+|||||+||+.+|.|++|++...
T Consensus 237 ---------~~gdd~~--hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~--- 302 (422)
T KOG2015|consen 237 ---------LDGDDPE--HIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTAT--- 302 (422)
T ss_pred ---------CCCCCHH--HHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhc---
Confidence 2223332 88888888899999999999999999999999999999999999999999999999863
Q ss_pred cccccccccc----cccccccc-CCCCCcccccCCCcceEEEEEEeCCCCcHHHHHHHHHHc-CCceeeeecCC-ceeec
Q 003715 671 EDYRNTFANL----ALPLFSMA-EPVPPKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQDK-GLNAYSISYGS-CLLFN 743 (800)
Q Consensus 671 ~~~rn~f~nl----a~p~~~~~-eP~~~~~~~~~~~~~t~wdr~~v~~~~TL~~li~~~~~~-~l~~~~i~~g~-~~lY~ 743 (800)
..|-+-|+|. ++-.+.|. |-.+.+..|-. .-..+++....||+++++++.+. ++..+.++.-. ..||.
T Consensus 303 ~~~~~Nym~~n~~eG~ytytf~~er~~nC~vCS~-----~~~~~~ispt~tl~~vl~~ls~~~~lk~p~~tt~~~~~ly~ 377 (422)
T KOG2015|consen 303 DDPLDNYMNYNAEEGIYTYTFLLERDKNCPVCSN-----LVQNYDISPTVTLEDVLNHLSKSFQLKSPALTTAAGRTLYL 377 (422)
T ss_pred chhhhhheeeecccceeEEEeeeccCCCCccccC-----CCcccccCCcccHHHHHHHhhhhhccCCchhhhhhcceEee
Confidence 2333444432 11122211 11111111111 11224455678999999999988 99988876433 68999
Q ss_pred cCCc----chhhcccCcHHHH
Q 003715 744 SMFP----RHKERMDKKVVDL 760 (800)
Q Consensus 744 ~~~~----~~~~~l~~~l~~l 760 (800)
+++| .+++||.++|.||
T Consensus 378 ~~~~~~e~~t~~nl~~~l~~l 398 (422)
T KOG2015|consen 378 SSVPSIEEATRKNLSQSLKEL 398 (422)
T ss_pred cCCcHHHHHhhhhhhhhHHHh
Confidence 9987 4678999999999
No 9
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=6.5e-37 Score=324.37 Aligned_cols=182 Identities=26% Similarity=0.342 Sum_probs=166.2
Q ss_pred ccCcchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCc
Q 003715 191 LNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 270 (800)
Q Consensus 191 ~~~Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~ 270 (800)
..+||.||+.++|.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.||.||||||++++.+|||+
T Consensus 6 ~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGV-----G~i~lvD~D~Ve~SNLnRQ~l~~~~diG~ 80 (287)
T PRK08223 6 YDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGI-----GKFTIADFDVFELRNFNRQAGAMMSTLGR 80 (287)
T ss_pred HHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCC-----CeEEEEeCCCcchhccccccCcChhHCCC
Confidence 3589999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCH--HHHHHHhhhcccccccEEEecccCcc
Q 003715 271 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNV--NARLYIDQRCLYFQKPLLESGTLGAK 348 (800)
Q Consensus 271 ~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~--~ar~~v~~~c~~~~~pli~sg~~G~~ 348 (800)
+|+++++++++++||+++|+++...+++++. +++++++|+||+|+|++ ++|.++++.|+.+++|+|.+++.|+.
T Consensus 81 ~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~----~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~ 156 (287)
T PRK08223 81 PKAEVLAEMVRDINPELEIRAFPEGIGKENA----DAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMG 156 (287)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEecccCccCH----HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCe
Confidence 9999999999999999999999999986543 46789999999999986 89999999999999999999999999
Q ss_pred cceEEEeCCcccccCCC-CC---CCC---------CCCCCccccCCC
Q 003715 349 CNTQMVIPHLTENYGAS-RD---PPE---------KQAPMCTVHSFP 382 (800)
Q Consensus 349 G~v~~iip~~t~~y~~~-~~---p~~---------~~~p~ctl~~fP 382 (800)
|++.++.|+ ++||.|. +. |++ ...|.|.-..+.
T Consensus 157 gqv~v~~p~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl 202 (287)
T PRK08223 157 TALLVFDPG-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYL 202 (287)
T ss_pred EEEEEEcCC-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCcc
Confidence 999999987 7999983 32 333 356788766665
No 10
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=8e-37 Score=312.89 Aligned_cols=175 Identities=29% Similarity=0.473 Sum_probs=160.7
Q ss_pred cchhhhhh--cCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCcc
Q 003715 194 RYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 271 (800)
Q Consensus 194 Rydrqi~l--~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~ 271 (800)
||+||+++ ||.++|++|++++|+|||+||+||+++++|+++|+ |+|+|+|.|.|+.+||+||+||+++|+|++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv-----~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~ 75 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGV-----GTIVIVDDDHVDLSNLQRQILFTEEDVGRP 75 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEecCCEEcccchhhhhccChhhCCCh
Confidence 89999999 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccce
Q 003715 272 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNT 351 (800)
Q Consensus 272 Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v 351 (800)
|+++++++++++||+++++++...+.+++. .++++++|+||+|+|+.++|.++++.|+.+++|+|.+++.|+.|++
T Consensus 76 Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~----~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~ 151 (202)
T TIGR02356 76 KVEVAAQRLRELNSDIQVTALKERVTAENL----ELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQL 151 (202)
T ss_pred HHHHHHHHHHHhCCCCEEEEehhcCCHHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEE
Confidence 999999999999999999999988865321 3578999999999999999999999999999999999999999999
Q ss_pred EEEeCC-cccccCCCCCCCCCCCCCcc
Q 003715 352 QMVIPH-LTENYGASRDPPEKQAPMCT 377 (800)
Q Consensus 352 ~~iip~-~t~~y~~~~~p~~~~~p~ct 377 (800)
.++.|+ .++||.|......+..|.|.
T Consensus 152 ~~~~p~~~~~c~~c~~~~~~~~~~~~~ 178 (202)
T TIGR02356 152 MVFDPGGEGPCLRCLFPDIADTGPSCA 178 (202)
T ss_pred EEEeCCCCCCChhhcCCCCcccCCCCc
Confidence 999998 79999995433233455664
No 11
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=1.7e-36 Score=319.02 Aligned_cols=171 Identities=33% Similarity=0.501 Sum_probs=159.5
Q ss_pred CCccCCCCccCcchhhhhh--cCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccc
Q 003715 183 LDPRDLQPLNSRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQ 260 (800)
Q Consensus 183 l~~~~~~~~~~Rydrqi~l--~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQ 260 (800)
++++++ +||+||+++ ||.++|++|++++|+|||+||+||+++++|+++|| |+|+|+|.|.|+.|||+||
T Consensus 5 l~~~~~----~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq 75 (245)
T PRK05690 5 LSDEEM----LRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGV-----GTLTLVDFDTVSLSNLQRQ 75 (245)
T ss_pred CCHHHH----HHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEECcchhhhh
Confidence 555565 899999987 99999999999999999999999999999999999 9999999999999999999
Q ss_pred cccccCccCccHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEE
Q 003715 261 FLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLL 340 (800)
Q Consensus 261 flf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli 340 (800)
+||+++|||++|+++++++++++||+++|+++...+++++. +++++++|+||+|+|+.++|.++++.|+.+++|+|
T Consensus 76 ~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~----~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v 151 (245)
T PRK05690 76 VLHDDATIGQPKVESARAALARINPHIAIETINARLDDDEL----AALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLV 151 (245)
T ss_pred hcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCCHHHH----HHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEE
Confidence 99999999999999999999999999999999988875322 46789999999999999999999999999999999
Q ss_pred EecccCcccceEEEeCCc-ccccCCCC
Q 003715 341 ESGTLGAKCNTQMVIPHL-TENYGASR 366 (800)
Q Consensus 341 ~sg~~G~~G~v~~iip~~-t~~y~~~~ 366 (800)
.+++.|+.|++.++.|+. ++||.|..
T Consensus 152 ~~~~~g~~G~v~~~~~~~~~~c~~c~~ 178 (245)
T PRK05690 152 SGAAIRMEGQVTVFTYQDDEPCYRCLS 178 (245)
T ss_pred EeeeccCCceEEEEecCCCCceeeecc
Confidence 999999999999999875 79999954
No 12
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=5e-36 Score=312.84 Aligned_cols=164 Identities=37% Similarity=0.572 Sum_probs=156.0
Q ss_pred cchhhhhh--cCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCcc
Q 003715 194 RYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 271 (800)
Q Consensus 194 Rydrqi~l--~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~ 271 (800)
||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.|+.+||+||+|++++|||++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~ 75 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGV-----GKLGLVDDDVVELSNLQRQILHTEADVGQP 75 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEEcCcccccccccChhhCCCh
Confidence 89999999 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccce
Q 003715 272 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNT 351 (800)
Q Consensus 272 Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v 351 (800)
|+++++++++++||+++|+.+...++.++. .++++++|+||+|+|+.++|.++++.|+.+++|+|++|+.|+.|++
T Consensus 76 Ka~~~~~~l~~~np~~~i~~~~~~i~~~~~----~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v 151 (228)
T cd00757 76 KAEAAAERLRAINPDVEIEAYNERLDAENA----EELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQV 151 (228)
T ss_pred HHHHHHHHHHHhCCCCEEEEecceeCHHHH----HHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEE
Confidence 999999999999999999999988854321 3578899999999999999999999999999999999999999999
Q ss_pred EEEeCCcccccCCCC
Q 003715 352 QMVIPHLTENYGASR 366 (800)
Q Consensus 352 ~~iip~~t~~y~~~~ 366 (800)
.+++|+.+.||.|..
T Consensus 152 ~~~~p~~~~c~~c~~ 166 (228)
T cd00757 152 TVFIPGEGPCYRCLF 166 (228)
T ss_pred EEECCCCCCCccccC
Confidence 999999999999954
No 13
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=7e-36 Score=334.07 Aligned_cols=183 Identities=27% Similarity=0.450 Sum_probs=166.2
Q ss_pred CCCccCCCCccCcchhhhhh--cCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCcc
Q 003715 182 PLDPRDLQPLNSRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSR 259 (800)
Q Consensus 182 ~l~~~~~~~~~~Rydrqi~l--~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnR 259 (800)
.+++.+. +||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.||.|||+|
T Consensus 10 ~l~~~~~----~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gv-----g~l~lvD~D~ve~sNL~R 80 (390)
T PRK07411 10 QLSKDEY----ERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGI-----GRIGIVDFDVVDSSNLQR 80 (390)
T ss_pred cCCHHHH----HHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCEecccccCc
Confidence 4565565 899999999 99999999999999999999999999999999999 999999999999999999
Q ss_pred ccccccCccCccHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccE
Q 003715 260 QFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPL 339 (800)
Q Consensus 260 Qflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pl 339 (800)
|+||+.+|||++||++++++++++||+++|+++..++++++. .+++.++|+||+|+||.++|..+++.|+.+++|+
T Consensus 81 Q~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~----~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~ 156 (390)
T PRK07411 81 QVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRLSSENA----LDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPN 156 (390)
T ss_pred CcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecccCHHhH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999999999999999999998876432 3678999999999999999999999999999999
Q ss_pred EEecccCcccceEEEeCCcccccCCCC-CC-CCCCCCCcc
Q 003715 340 LESGTLGAKCNTQMVIPHLTENYGASR-DP-PEKQAPMCT 377 (800)
Q Consensus 340 i~sg~~G~~G~v~~iip~~t~~y~~~~-~p-~~~~~p~ct 377 (800)
+.+++.|+.|++.++.|+.++||.|.- .+ +....|.|.
T Consensus 157 v~~~~~g~~g~~~v~~~~~~~c~~c~~~~~~~~~~~~~c~ 196 (390)
T PRK07411 157 VYGSIFRFEGQATVFNYEGGPNYRDLYPEPPPPGMVPSCA 196 (390)
T ss_pred EEEEEccCEEEEEEECCCCCCChHHhcCCCCCcccCCCCc
Confidence 999999999999988887899999953 33 333345664
No 14
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=6.9e-36 Score=311.92 Aligned_cols=165 Identities=32% Similarity=0.444 Sum_probs=156.2
Q ss_pred CcchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCc-c
Q 003715 193 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ-A 271 (800)
Q Consensus 193 ~Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~-~ 271 (800)
+||+||+++||.++|++|++++|+|+||||+||+++++|+++|| |+|+|+|.|.|+.|||+||++|+++|+|+ +
T Consensus 8 ~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~ 82 (231)
T PRK08328 8 ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGV-----GRILLIDEQTPELSNLNRQILHWEEDLGKNP 82 (231)
T ss_pred HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCccChhhhccccccChhhcCchH
Confidence 89999999999999999999999999999999999999999999 99999999999999999999999999999 6
Q ss_pred HHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccce
Q 003715 272 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNT 351 (800)
Q Consensus 272 Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v 351 (800)
|+++++++++++||+++|+++...+++++. +++++++|+||+|+|+.++|..+++.|+.+++|+|.+++.|+.|++
T Consensus 83 k~~~a~~~l~~~np~v~v~~~~~~~~~~~~----~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v 158 (231)
T PRK08328 83 KPLSAKWKLERFNSDIKIETFVGRLSEENI----DEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQV 158 (231)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeccCCHHHH----HHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEE
Confidence 999999999999999999999988764331 3578999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccccCCCC
Q 003715 352 QMVIPHLTENYGASR 366 (800)
Q Consensus 352 ~~iip~~t~~y~~~~ 366 (800)
.+++|+.|+||.|..
T Consensus 159 ~~~~p~~~~c~~~~~ 173 (231)
T PRK08328 159 TTIVPGKTKRLREIF 173 (231)
T ss_pred EEECCCCCCCHHHhC
Confidence 999999999998843
No 15
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=3.1e-35 Score=325.23 Aligned_cols=176 Identities=29% Similarity=0.400 Sum_probs=162.8
Q ss_pred Ccchhhhhh--cCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCc
Q 003715 193 SRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 270 (800)
Q Consensus 193 ~Rydrqi~l--~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~ 270 (800)
+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.|+.|||+||+||++.|||+
T Consensus 7 ~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~ 81 (355)
T PRK05597 7 ARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGV-----GHITIIDDDTVDLSNLHRQVIHSTAGVGQ 81 (355)
T ss_pred hHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcccccccCcccChhHCCC
Confidence 899999999 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccc
Q 003715 271 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 350 (800)
Q Consensus 271 ~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~ 350 (800)
+|+++++++|+++||+++|+++..+++.++. .++++++|+||+|+||..+|..+++.|+.+++|+|.+++.|+.|+
T Consensus 82 ~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~----~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~ 157 (355)
T PRK05597 82 PKAESAREAMLALNPDVKVTVSVRRLTWSNA----LDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQ 157 (355)
T ss_pred hHHHHHHHHHHHHCCCcEEEEEEeecCHHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEE
Confidence 9999999999999999999999988875432 357899999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccccCCC-CC-CCCCCCCCcc
Q 003715 351 TQMVIPHLTENYGAS-RD-PPEKQAPMCT 377 (800)
Q Consensus 351 v~~iip~~t~~y~~~-~~-p~~~~~p~ct 377 (800)
+.++.|+.++||.|. +. |+....|.|.
T Consensus 158 v~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 186 (355)
T PRK05597 158 LSVFHAGHGPIYEDLFPTPPPPGSVPSCS 186 (355)
T ss_pred EEEEcCCCCCCHHHhCCCCCCccCCCCcc
Confidence 999989889999994 33 3334567775
No 16
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=7.3e-35 Score=296.96 Aligned_cols=152 Identities=26% Similarity=0.427 Sum_probs=144.6
Q ss_pred CcchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccH
Q 003715 193 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 272 (800)
Q Consensus 193 ~Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~K 272 (800)
.|||||+++||.++|++|++++|+|+|+||+|||++|+|+++|| |+|+|+|+|.|+.+||+|||||+.+|+|++|
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GV-----g~i~lvD~d~ve~snL~rqfl~~~~diG~~K 76 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGI-----GSLTILDDRTVTEEDLGAQFLIPAEDLGQNR 76 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCC-----CEEEEEECCcccHhhCCCCccccHHHcCchH
Confidence 69999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceE
Q 003715 273 STVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQ 352 (800)
Q Consensus 273 a~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v~ 352 (800)
+++++++++++||+++++++...+.+. +.+||+++|+||+|+|+.++|.++++.|+.+++|++.+++.|+.|++.
T Consensus 77 a~a~~~~L~~lNp~v~i~~~~~~~~~~-----~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~ 151 (197)
T cd01492 77 AEASLERLRALNPRVKVSVDTDDISEK-----PEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVF 151 (197)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcccc-----HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEE
Confidence 999999999999999999998877632 356889999999999999999999999999999999999999999986
Q ss_pred EE
Q 003715 353 MV 354 (800)
Q Consensus 353 ~i 354 (800)
+.
T Consensus 152 ~d 153 (197)
T cd01492 152 AD 153 (197)
T ss_pred Ee
Confidence 53
No 17
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=1.3e-34 Score=303.70 Aligned_cols=165 Identities=30% Similarity=0.462 Sum_probs=153.1
Q ss_pred Ccchhhhhhc--CHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCc
Q 003715 193 SRYDAQISVF--GSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 270 (800)
Q Consensus 193 ~Rydrqi~l~--G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~ 270 (800)
.||+||+++| |.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|.|.|+.|||+||+|+.+.|||+
T Consensus 3 ~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~RQ~l~~~~diG~ 77 (240)
T TIGR02355 3 LRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGV-----GNLTLLDFDTVSLSNLQRQVLHSDANIGQ 77 (240)
T ss_pred cceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCcccccCcccceeeeHhhCCC
Confidence 7999999996 5899999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccc
Q 003715 271 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 350 (800)
Q Consensus 271 ~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~ 350 (800)
+|+++++++++++||+++|+++..++++++. .++++++|+||+|+|+.++|..+++.|+.+++|+|.+++.|+.|+
T Consensus 78 ~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~----~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~ 153 (240)
T TIGR02355 78 PKVESAKDALTQINPHIAINPINAKLDDAEL----AALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQ 153 (240)
T ss_pred cHHHHHHHHHHHHCCCcEEEEEeccCCHHHH----HHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeE
Confidence 9999999999999999999999988875332 467899999999999999999999999999999999999999999
Q ss_pred eEEEe-CCcccccCCCC
Q 003715 351 TQMVI-PHLTENYGASR 366 (800)
Q Consensus 351 v~~ii-p~~t~~y~~~~ 366 (800)
+.++. +..++||.|..
T Consensus 154 v~~~~~~~~~~c~~C~~ 170 (240)
T TIGR02355 154 VSVFTYQDGEPCYRCLS 170 (240)
T ss_pred EEEEecCCCCCcccccc
Confidence 88765 44578998864
No 18
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=3e-33 Score=313.53 Aligned_cols=167 Identities=23% Similarity=0.366 Sum_probs=151.6
Q ss_pred CcchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccH
Q 003715 193 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 272 (800)
Q Consensus 193 ~Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~K 272 (800)
.|||||+|+||.++|++|++++|+||||||+|||++|||+++|| |+|+|+|+|.|+.+||+||||++.+|||++|
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GI-----g~~tIvD~~~V~~sDL~~nFfl~~~diGk~k 75 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGI-----GSFTIVDGSKVDEEDLGNNFFLDASSLGKSR 75 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCC-----CeEEEECCCcCchhhccccccCChhhcCcHH
Confidence 48999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceE
Q 003715 273 STVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQ 352 (800)
Q Consensus 273 a~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v~ 352 (800)
|+++++.|+++||+++++.+.+.+..-. ..+.+||+++|+||.|.++...+..+++.|+.+++|+|.+++.|+.|+++
T Consensus 76 A~~~~~~L~eLNp~V~i~~~~e~~~~ll--~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~ 153 (425)
T cd01493 76 AEATCELLQELNPDVNGSAVEESPEALL--DNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIR 153 (425)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccchhh--hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEE
Confidence 9999999999999999999987654211 12367999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccccCCCCC
Q 003715 353 MVIPHLTENYGASRD 367 (800)
Q Consensus 353 ~iip~~t~~y~~~~~ 367 (800)
+.+|..+ +..+.++
T Consensus 154 v~~~~h~-i~et~p~ 167 (425)
T cd01493 154 IQLKEHT-IVESHPD 167 (425)
T ss_pred EEECCeE-EEECCCC
Confidence 9998532 4444433
No 19
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=1.1e-34 Score=309.18 Aligned_cols=187 Identities=24% Similarity=0.311 Sum_probs=165.7
Q ss_pred cchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHH
Q 003715 194 RYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS 273 (800)
Q Consensus 194 Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka 273 (800)
.|+||+++||.++|++|++++|+|+|+||+|||+||||+++|| |+|+|+|.|.++.+||+|||+++++|||++||
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGV-----g~itI~D~d~ve~snL~rqf~~~~~dIGk~Ka 75 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGV-----KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRA 75 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCC-----CeEEEEcCCccchhhcccCccCChHHhCHHHH
Confidence 4999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEE
Q 003715 274 TVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQM 353 (800)
Q Consensus 274 ~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v~~ 353 (800)
++++++|+++||+++|+++...+ +.+++.++|+||+|.|+.++|..+|++|+.+++|+|.+++.|+.|++.+
T Consensus 76 ea~~~~L~eLNp~V~V~~~~~~~--------~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~ 147 (286)
T cd01491 76 EASQARLAELNPYVPVTVSTGPL--------TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFC 147 (286)
T ss_pred HHHHHHHHHHCCCCEEEEEeccC--------CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEe
Confidence 99999999999999999998653 2467899999999999999999999999999999999999999999987
Q ss_pred EeCCcccccCCCCCCCCCCCCCccccCCCCCcchhHHHHHh
Q 003715 354 VIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARS 394 (800)
Q Consensus 354 iip~~t~~y~~~~~p~~~~~p~ctl~~fP~~~~h~i~wa~~ 394 (800)
.......|+++.. +++++.+.|.+.+-+..+.||+.=.|.
T Consensus 148 dfg~~f~~~d~~g-e~p~~~~i~~I~~~~~g~V~~~~~~~h 187 (286)
T cd01491 148 DFGDEFTVYDPNG-EEPKSGMISSISKDNPGVVTCLDETRH 187 (286)
T ss_pred cCCCeEEEeCCCC-CcCCccceeeeecCCceEEEEECCccc
Confidence 5554444443222 234567888888878888899854444
No 20
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=2.1e-34 Score=322.77 Aligned_cols=171 Identities=27% Similarity=0.461 Sum_probs=159.1
Q ss_pred CCCccCCCCccCcchhhhhh--cCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCcc
Q 003715 182 PLDPRDLQPLNSRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSR 259 (800)
Q Consensus 182 ~l~~~~~~~~~~Rydrqi~l--~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnR 259 (800)
.+++++. +||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.||.|||+|
T Consensus 14 ~l~~~~~----~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~R 84 (392)
T PRK07878 14 ELTRDEV----ARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGV-----GTLGIVEFDVVDESNLQR 84 (392)
T ss_pred CCCHHHH----HHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEecCccccc
Confidence 4566666 899999998 99999999999999999999999999999999999 999999999999999999
Q ss_pred ccccccCccCccHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccE
Q 003715 260 QFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPL 339 (800)
Q Consensus 260 Qflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pl 339 (800)
||+|+++|||++|+++++++|+++||+++|+++..+++.++. .++++++|+||+|+||..+|..+|+.|+.+++|+
T Consensus 85 q~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~----~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~ 160 (392)
T PRK07878 85 QVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLDPSNA----VELFSQYDLILDGTDNFATRYLVNDAAVLAGKPY 160 (392)
T ss_pred ccccChhcCCChHHHHHHHHHHHhCCCcEEEEEeccCChhHH----HHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999999999999999999988875432 4678999999999999999999999999999999
Q ss_pred EEecccCcccceEEEeC----CcccccCCC
Q 003715 340 LESGTLGAKCNTQMVIP----HLTENYGAS 365 (800)
Q Consensus 340 i~sg~~G~~G~v~~iip----~~t~~y~~~ 365 (800)
|.+++.|+.|++.++.+ +.++||.|.
T Consensus 161 v~~~~~g~~G~v~~~~~~~~~~~~~c~~c~ 190 (392)
T PRK07878 161 VWGSIYRFEGQASVFWEDAPDGLGLNYRDL 190 (392)
T ss_pred EEEEeccCEEEEEEEecCCCCCCCCeeeee
Confidence 99999999999998874 368899994
No 21
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=1.7e-34 Score=320.12 Aligned_cols=181 Identities=28% Similarity=0.478 Sum_probs=162.5
Q ss_pred CCccCCCCccCcchhhhhh--cCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccc
Q 003715 183 LDPRDLQPLNSRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQ 260 (800)
Q Consensus 183 l~~~~~~~~~~Rydrqi~l--~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQ 260 (800)
+++.+. .||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.|+.|||+||
T Consensus 14 ~~~~e~----~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gv-----g~i~ivD~D~ve~sNL~RQ 84 (370)
T PRK05600 14 LPTSEL----RRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGV-----GTITLIDDDTVDVSNIHRQ 84 (370)
T ss_pred CCHHHH----HHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEeCCEEcccccccc
Confidence 455555 899999999 99999999999999999999999999999999999 9999999999999999999
Q ss_pred cccccCccCccHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEE
Q 003715 261 FLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLL 340 (800)
Q Consensus 261 flf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli 340 (800)
++|+++|||++|+++++++++++||+++|+++..++++++. .++++++|+||+|+||.++|..+++.|+.+++|+|
T Consensus 85 ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~----~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v 160 (370)
T PRK05600 85 ILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLTAENA----VELLNGVDLVLDGSDSFATKFLVADAAEITGTPLV 160 (370)
T ss_pred ccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999998875432 35789999999999999999999999999999999
Q ss_pred EecccCcccceEEEeCCc---ccccCCC-CC-CCCCCCCCc
Q 003715 341 ESGTLGAKCNTQMVIPHL---TENYGAS-RD-PPEKQAPMC 376 (800)
Q Consensus 341 ~sg~~G~~G~v~~iip~~---t~~y~~~-~~-p~~~~~p~c 376 (800)
.+++.|+.|++.++.|.. +.||.|. +. |+....|.|
T Consensus 161 ~~~~~g~~G~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~c 201 (370)
T PRK05600 161 WGTVLRFHGELAVFNSGPDHRGVGLRDLFPEQPSGDSIPDC 201 (370)
T ss_pred EEEEecCEEEEEEEecCCCCCCCCcHhhCCCCCccccCCCC
Confidence 999999999999888753 6788884 33 222344556
No 22
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=3.1e-34 Score=292.65 Aligned_cols=155 Identities=24% Similarity=0.441 Sum_probs=144.2
Q ss_pred cchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCcccccccc--CccCcc
Q 003715 194 RYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD--WNIGQA 271 (800)
Q Consensus 194 Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~--~dIG~~ 271 (800)
|||||+++||.++|++|++++|+||||||+|||++|+|+++|| |+|+|+|.|.|+.+||+|||||++ .|+|++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GV-----g~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~ 75 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGI-----DSITIVDHRLVSTEDLGSNFFLDAEVSNSGMN 75 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEECCcCChhcCcccEecccchhhcCch
Confidence 6999999999999999999999999999999999999999999 999999999999999999999998 899999
Q ss_pred HHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccce
Q 003715 272 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNT 351 (800)
Q Consensus 272 Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v 351 (800)
|+++++++++++||+++|+++...+....+ ...+||+++|+||+|.|+.++|.++++.|+.+++|++.+++.|+.|++
T Consensus 76 Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~--~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v 153 (198)
T cd01485 76 RAAASYEFLQELNPNVKLSIVEEDSLSNDS--NIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYA 153 (198)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecccccchh--hHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEE
Confidence 999999999999999999999887652111 235789999999999999999999999999999999999999999998
Q ss_pred EEEe
Q 003715 352 QMVI 355 (800)
Q Consensus 352 ~~ii 355 (800)
.+.+
T Consensus 154 ~~~~ 157 (198)
T cd01485 154 FFDF 157 (198)
T ss_pred EEch
Confidence 7543
No 23
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=2.5e-33 Score=307.51 Aligned_cols=165 Identities=30% Similarity=0.444 Sum_probs=155.5
Q ss_pred Ccchhhhhh--cCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccC-
Q 003715 193 SRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG- 269 (800)
Q Consensus 193 ~Rydrqi~l--~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG- 269 (800)
+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+||+||+++|+|
T Consensus 3 ~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGv-----g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~ 77 (338)
T PRK12475 3 ERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGI-----GKLTIADRDYVEWSNLQRQQLYTEEDAKQ 77 (338)
T ss_pred chhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCcccccccCccccccHHHccC
Confidence 799999998 89999999999999999999999999999999999 9999999999999999999999999985
Q ss_pred -ccHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcc
Q 003715 270 -QAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAK 348 (800)
Q Consensus 270 -~~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~ 348 (800)
++|+++++++++++||+++|+++...+++++. .++++++|+||+|+||.++|..+++.|+.+++|+|.+++.|+.
T Consensus 78 g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~~----~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~ 153 (338)
T PRK12475 78 KKPKAIAAKEHLRKINSEVEIVPVVTDVTVEEL----EELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSY 153 (338)
T ss_pred CccHHHHHHHHHHHHCCCcEEEEEeccCCHHHH----HHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccE
Confidence 89999999999999999999999887764322 3567899999999999999999999999999999999999999
Q ss_pred cceEEEeCCcccccCCCC
Q 003715 349 CNTQMVIPHLTENYGASR 366 (800)
Q Consensus 349 G~v~~iip~~t~~y~~~~ 366 (800)
|++.+++|+.|+||.|..
T Consensus 154 G~~~~~~P~~tpC~~Cl~ 171 (338)
T PRK12475 154 GVTYTIIPGKTPCLRCLM 171 (338)
T ss_pred EEEEEECCCCCCCHHHhc
Confidence 999999999999999964
No 24
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=4.4e-33 Score=305.69 Aligned_cols=166 Identities=28% Similarity=0.418 Sum_probs=155.7
Q ss_pred cCcchhhhhh--cCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccC
Q 003715 192 NSRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 269 (800)
Q Consensus 192 ~~Rydrqi~l--~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG 269 (800)
.+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+||+||+++|||
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~RQ~l~~~~dig 76 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGV-----GKVTIVDRDYVEWSNLQRQQLYTESDVK 76 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCccCHHHcCccccccHHHhc
Confidence 3799999988 99999999999999999999999999999999999 9999999999999999999999999995
Q ss_pred --ccHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCc
Q 003715 270 --QAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGA 347 (800)
Q Consensus 270 --~~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~ 347 (800)
++|+++++++++++||+++++++...+++++. .++++++|+||+|+||.++|..+++.|+.+++|+|.+++.|+
T Consensus 77 ~g~~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~----~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~ 152 (339)
T PRK07688 77 NNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEEL----EELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGS 152 (339)
T ss_pred CCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHH----HHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeee
Confidence 69999999999999999999999988765432 356789999999999999999999999999999999999999
Q ss_pred ccceEEEeCCcccccCCCC
Q 003715 348 KCNTQMVIPHLTENYGASR 366 (800)
Q Consensus 348 ~G~v~~iip~~t~~y~~~~ 366 (800)
.|++.++.|+.++||.|..
T Consensus 153 ~G~~~~~~p~~~pC~~Cl~ 171 (339)
T PRK07688 153 YGLSYTIIPGKTPCLRCLL 171 (339)
T ss_pred eeEEEEECCCCCCCeEeec
Confidence 9999999999999999953
No 25
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=99.97 E-value=7.4e-33 Score=260.50 Aligned_cols=123 Identities=41% Similarity=0.813 Sum_probs=98.8
Q ss_pred ccccccccccccccccCCCCCcccccCCCcceEEEEEEeCCCCcHHHHHHHHHHc-CCceeeeecCCceeeccC-Ccchh
Q 003715 673 YRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQDK-GLNAYSISYGSCLLFNSM-FPRHK 750 (800)
Q Consensus 673 ~rn~f~nla~p~~~~~eP~~~~~~~~~~~~~t~wdr~~v~~~~TL~~li~~~~~~-~l~~~~i~~g~~~lY~~~-~~~~~ 750 (800)
|||+|+|||+|+|+||||.+|++.++.+.+||+||||++++++||++|+++|+++ |++|+||++|+++||++| .++++
T Consensus 1 yrN~F~NLAlP~~~fsEP~~~~k~k~~~~~~T~WDr~~v~~~~Tl~~li~~~~~~~~lev~ml~~g~~~LY~~f~~~~~~ 80 (125)
T PF09358_consen 1 YRNSFLNLALPFFSFSEPIPAPKTKYNDKEWTLWDRIEVNGDMTLQELIDYFKEKYGLEVTMLSQGVSLLYSSFPPPKHK 80 (125)
T ss_dssp --EEEEETTTTEEEEE---B--EEEETTEEETTT-EEEEES--BHHHHHHHHHHTTS-EEEEEEETTEEEEETT-HHHHH
T ss_pred CccEEEEcCccceeeeeccCCCceEecCccccceeEEEEcCCCCHHHHHHHHHHHhCceEEEEEeCCEEEEecCChhhhH
Confidence 8999999999999999999999999988999999999999999999999999999 999999999999999999 55789
Q ss_pred hcccCcHHHHHHhhhcCCCCCCeeEEEEEEEeecCCCCccccCeE
Q 003715 751 ERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQI 795 (800)
Q Consensus 751 ~~l~~~l~~l~~~~~~~~~~~~~~~l~l~~~~~d~~~~dv~~P~v 795 (800)
+||+++|++|++++++++++++++||+|+|+|+|++|+||++|+|
T Consensus 81 ~rl~~~i~elv~~v~k~~~~~~~~~l~l~v~~~d~~~edv~vP~i 125 (125)
T PF09358_consen 81 ERLKMPISELVEEVTKKPIPPGQKYLVLEVSCEDEDGEDVEVPYI 125 (125)
T ss_dssp HHTTSBHHHHHHHHTSS---TT--EEEEEEEEE-TTS-EE---EE
T ss_pred HHhCCcHHHHHHHhcCCCCCCCceEEEEEEEEeCCCCCccCCCCC
Confidence 999999999999999999999999999999999999999999997
No 26
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.97 E-value=9.7e-32 Score=300.36 Aligned_cols=176 Identities=32% Similarity=0.548 Sum_probs=160.0
Q ss_pred Ccchhhhhh--cCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCc
Q 003715 193 SRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 270 (800)
Q Consensus 193 ~Rydrqi~l--~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~ 270 (800)
.||+||+.+ ||.++|++|++++|+|+||||+||+++++|+++|| |+|+|+|.|.|+.|||+||+|++++|||+
T Consensus 114 ~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gv-----g~i~lvD~d~v~~sNl~Rq~l~~~~diG~ 188 (376)
T PRK08762 114 ERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGV-----GTLGIVDHDVVDRSNLQRQILHTEDRVGQ 188 (376)
T ss_pred HHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEecchhhccccccchhhCCC
Confidence 799999999 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccc
Q 003715 271 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 350 (800)
Q Consensus 271 ~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~ 350 (800)
+|+++++++++++||+++++++...+..++. .++++++|+||+|+|+.++|.++++.|+.+++|+|.+++.|+.|+
T Consensus 189 ~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~----~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~ 264 (376)
T PRK08762 189 PKVDSAAQRLAALNPDVQVEAVQERVTSDNV----EALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQ 264 (376)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEeccCChHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 9999999999999999999999888765332 356789999999999999999999999999999999999999999
Q ss_pred eEEEeCCc----ccccCCCC-C-CCCCCCCCcc
Q 003715 351 TQMVIPHL----TENYGASR-D-PPEKQAPMCT 377 (800)
Q Consensus 351 v~~iip~~----t~~y~~~~-~-p~~~~~p~ct 377 (800)
+.++.|+. ++||.|.. . |+....|.|.
T Consensus 265 v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~~ 297 (376)
T PRK08762 265 VSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCA 297 (376)
T ss_pred EEEEeCCCCCCCCCCHhhcCCCCCCcccCCCCc
Confidence 99999876 89999953 2 2222345564
No 27
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.97 E-value=9.2e-32 Score=285.28 Aligned_cols=171 Identities=37% Similarity=0.586 Sum_probs=158.7
Q ss_pred CccCCCCccCcchhhhhhcC--HHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCcccc
Q 003715 184 DPRDLQPLNSRYDAQISVFG--SKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQF 261 (800)
Q Consensus 184 ~~~~~~~~~~Rydrqi~l~G--~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQf 261 (800)
+..++ .||+||+.+++ .++|++|++++|+|||+||+||+++++|+++|| |+++|+|.|+|+.|||+||+
T Consensus 4 ~~~~~----~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGv-----g~l~i~D~d~v~~snL~rq~ 74 (254)
T COG0476 4 SDEEI----ERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGV-----GKLTIVDFDTVELSNLQRQF 74 (254)
T ss_pred cHHHH----HhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCC-----CeEEEEcCCcccccccCcee
Confidence 44455 89999999955 445999999999999999999999999999999 99999999999999999999
Q ss_pred ccccCccCccHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEE
Q 003715 262 LFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLE 341 (800)
Q Consensus 262 lf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~ 341 (800)
+|++.|||++|++++++.+.++||.+.++++...++.++. ..++.++|+|++|+||..+|..+|+.|+.+++|+++
T Consensus 75 ~~~~~dig~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~----~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~ 150 (254)
T COG0476 75 LFTEADVGKPKAEVAAKALRKLNPLVEVVAYLERLDEENA----EELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVH 150 (254)
T ss_pred eecccccCCcHHHHHHHHHHHhCCCCeEEEeecccChhhH----HHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEe
Confidence 9999999999999999999999999999999998876543 367899999999999999999999999999999999
Q ss_pred ecccCcccceEEEeCC-cccccCCCCC
Q 003715 342 SGTLGAKCNTQMVIPH-LTENYGASRD 367 (800)
Q Consensus 342 sg~~G~~G~v~~iip~-~t~~y~~~~~ 367 (800)
+|+.|+.|++.++.|. .++||.|..+
T Consensus 151 ~~~~~~~g~~~~~~~~~~~~c~~~~~~ 177 (254)
T COG0476 151 GGAIGFEGQVTVIIPGDKTPCYRCLFP 177 (254)
T ss_pred eeeccceEEEEEEecCCCCCcccccCC
Confidence 9999999999999999 5999999543
No 28
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.97 E-value=1e-32 Score=288.40 Aligned_cols=176 Identities=31% Similarity=0.461 Sum_probs=164.0
Q ss_pred CCCCccCCCCccCcchhhhhh--cCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCc
Q 003715 181 EPLDPRDLQPLNSRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLS 258 (800)
Q Consensus 181 ~~l~~~~~~~~~~Rydrqi~l--~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLn 258 (800)
..++.+|+ .||+||+.+ +|..+|.+|.+++|+||||||+||..+..|+.+|+ |+|-|+|.|.||.|||.
T Consensus 37 ~~Ls~dei----~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGv-----G~lGiVD~DvVe~sNlh 107 (427)
T KOG2017|consen 37 AGLSLDEI----LRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGV-----GRLGIVDYDVVELSNLH 107 (427)
T ss_pred cCCCHHHH----HhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCC-----CeecccccceeehhhHH
Confidence 36788888 999999988 89999999999999999999999999999999999 99999999999999999
Q ss_pred cccccccCccCccHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhccccccc
Q 003715 259 RQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKP 338 (800)
Q Consensus 259 RQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~p 338 (800)
||.++.+..+|+.||+.|+..++++||+++|..|.+.+.+.+. .+.++++|+|+||+||+.+|+.+++.|+..++|
T Consensus 108 RQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa----~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkp 183 (427)
T KOG2017|consen 108 RQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNA----FDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKP 183 (427)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechhhccchhH----HHHhhccceEEEcCCCccchhhhhhHHHHcCCc
Confidence 9999999999999999999999999999999999999987654 246799999999999999999999999999999
Q ss_pred EEEecccCcccceEEEeCCcccccCC-CCCCC
Q 003715 339 LLESGTLGAKCNTQMVIPHLTENYGA-SRDPP 369 (800)
Q Consensus 339 li~sg~~G~~G~v~~iip~~t~~y~~-~~~p~ 369 (800)
++.+..+++.||..++--...+||.| ++.||
T Consensus 184 LVSgSaLr~EGQLtvYny~~GPCYRClFP~Pp 215 (427)
T KOG2017|consen 184 LVSGSALRWEGQLTVYNYNNGPCYRCLFPNPP 215 (427)
T ss_pred ccccccccccceeEEeecCCCceeeecCCCCc
Confidence 99999999999987776677999999 45544
No 29
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.97 E-value=2.7e-31 Score=276.77 Aligned_cols=162 Identities=26% Similarity=0.388 Sum_probs=142.4
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCC----c-ceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHC
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQ----G-KLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALIN 284 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~----g-~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~n 284 (800)
-+..+|+||||||+||+++++||++|+++... | +|+|+|+|+|+.|||||| +|...|||++||++++++++.++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence 36789999999999999999999998644222 3 999999999999999999 57778999999999999999988
Q ss_pred CCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhccc--c-cccEEEecc--------cCc-----c
Q 003715 285 PHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLY--F-QKPLLESGT--------LGA-----K 348 (800)
Q Consensus 285 p~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~--~-~~pli~sg~--------~G~-----~ 348 (800)
+++|+++..++.++ .++.++|+||+|+||.++|.++++.|++ . .+||+++|+ .|. +
T Consensus 88 -~~~i~a~~~~~~~~-------~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k 159 (244)
T TIGR03736 88 -GTDWTAHPERVERS-------STLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAK 159 (244)
T ss_pred -CceEEEEEeeeCch-------hhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccc
Confidence 89999999888752 2346899999999999999999999987 3 489999999 666 7
Q ss_pred cceEEEeCCcccccCCCCCC---CCCCCCCccccC
Q 003715 349 CNTQMVIPHLTENYGASRDP---PEKQAPMCTVHS 380 (800)
Q Consensus 349 G~v~~iip~~t~~y~~~~~p---~~~~~p~ctl~~ 380 (800)
|++++++|++|++|++..+| ++++.|+||+..
T Consensus 160 ~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla~ 194 (244)
T TIGR03736 160 GENRLRLPHVGELFPELIDPSVDPDDDRPSCSLAE 194 (244)
T ss_pred cCCceecCCchhhCcccccCccCCCCCCCCchHHH
Confidence 88899999999999998887 677999999763
No 30
>PRK14851 hypothetical protein; Provisional
Probab=99.97 E-value=4.7e-31 Score=310.66 Aligned_cols=166 Identities=27% Similarity=0.394 Sum_probs=155.6
Q ss_pred cCcchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCcc
Q 003715 192 NSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 271 (800)
Q Consensus 192 ~~Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~ 271 (800)
.+||+||+++||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.||.||||||++|+.+|||++
T Consensus 23 ~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GV-----G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~ 97 (679)
T PRK14851 23 EAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGI-----GRFHIADFDQFEPVNVNRQFGARVPSFGRP 97 (679)
T ss_pred HHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCC-----CeEEEEcCCEecccccccCcCcChhhCCCH
Confidence 389999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCC--HHHHHHHhhhcccccccEEEecccCccc
Q 003715 272 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDN--VNARLYIDQRCLYFQKPLLESGTLGAKC 349 (800)
Q Consensus 272 Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn--~~ar~~v~~~c~~~~~pli~sg~~G~~G 349 (800)
|+++++++++++||+++|+++...+++++. ++|++++|+||+|+|+ .++|.++++.|+.+++|+|.+|+.|+.|
T Consensus 98 Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~----~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g 173 (679)
T PRK14851 98 KLAVMKEQALSINPFLEITPFPAGINADNM----DAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSS 173 (679)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCChHHH----HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccc
Confidence 999999999999999999999999975442 4688999999999997 5789999999999999999999999999
Q ss_pred ceEEEeCCcccccCCCCC
Q 003715 350 NTQMVIPHLTENYGASRD 367 (800)
Q Consensus 350 ~v~~iip~~t~~y~~~~~ 367 (800)
++.++.|+ +.||.|.-+
T Consensus 174 ~~~~~~p~-~~~~~~~~~ 190 (679)
T PRK14851 174 AMLVFTPQ-GMGFDDYFN 190 (679)
T ss_pred eEEEEcCC-CCCHhHhcc
Confidence 99999997 677777544
No 31
>PRK14852 hypothetical protein; Provisional
Probab=99.97 E-value=8e-31 Score=311.89 Aligned_cols=167 Identities=24% Similarity=0.395 Sum_probs=155.5
Q ss_pred ccCcchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCc
Q 003715 191 LNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 270 (800)
Q Consensus 191 ~~~Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~ 270 (800)
...||+||+++||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.||.||||||++++.+|||+
T Consensus 311 ~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGV-----G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~ 385 (989)
T PRK14852 311 TDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGI-----GNFNLADFDAYSPVNLNRQYGASIASFGR 385 (989)
T ss_pred HHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCC-----CeEEEEcCCEecccccccccCCChhhCCC
Confidence 3579999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCH--HHHHHHhhhcccccccEEEecccCcc
Q 003715 271 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNV--NARLYIDQRCLYFQKPLLESGTLGAK 348 (800)
Q Consensus 271 ~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~--~ar~~v~~~c~~~~~pli~sg~~G~~ 348 (800)
+|+++++++++++||+++|+++...+++++. ++|++++|+||+|+|++ ++|+++++.|+.+++|+|.+|+.|+.
T Consensus 386 ~Kaevaa~~l~~INP~v~I~~~~~~I~~en~----~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~ 461 (989)
T PRK14852 386 GKLDVMTERALSVNPFLDIRSFPEGVAAETI----DAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYS 461 (989)
T ss_pred hHHHHHHHHHHHHCCCCeEEEEecCCCHHHH----HHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccC
Confidence 9999999999999999999999998876543 47889999999999984 67888999999999999999999999
Q ss_pred cceEEEeCCcccccCCCCC
Q 003715 349 CNTQMVIPHLTENYGASRD 367 (800)
Q Consensus 349 G~v~~iip~~t~~y~~~~~ 367 (800)
|++.++.|+. .||.|.-+
T Consensus 462 g~v~v~~p~~-~~~~~~f~ 479 (989)
T PRK14852 462 CALLVFMPGG-MNFDSYFG 479 (989)
T ss_pred eeEEEEcCCC-CCHHHhCC
Confidence 9999999874 88887543
No 32
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.96 E-value=4.6e-30 Score=271.29 Aligned_cols=162 Identities=25% Similarity=0.395 Sum_probs=142.6
Q ss_pred CcchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccH
Q 003715 193 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 272 (800)
Q Consensus 193 ~Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~K 272 (800)
.||+||.++||.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|+|.|+.||+|||+++..++||++|
T Consensus 11 ~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GV-----g~itLiD~D~V~~sNlnRQ~~~~~~~vG~~K 85 (268)
T PRK15116 11 QRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGI-----GAITLIDMDDVCVTNTNRQIHALRDNVGLAK 85 (268)
T ss_pred HHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCEecccccccccccChhhcChHH
Confidence 79999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhc-cCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccce
Q 003715 273 STVAASAAALINPHLNTEALQIRANPETENVFNDTFW-ENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNT 351 (800)
Q Consensus 273 a~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~-~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v 351 (800)
++++++++.++||+++|+.+...+.+++.. +++ .++|+||+|.|++.++..+++.|+.+++|+|.+|..|.+..-
T Consensus 86 ve~~~~rl~~INP~~~V~~i~~~i~~e~~~----~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp 161 (268)
T PRK15116 86 AEVMAERIRQINPECRVTVVDDFITPDNVA----EYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDP 161 (268)
T ss_pred HHHHHHHHHhHCCCcEEEEEecccChhhHH----HHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCC
Confidence 999999999999999999998877654421 233 579999999999999999999999999999998766655442
Q ss_pred -EEEeCCcccccC
Q 003715 352 -QMVIPHLTENYG 363 (800)
Q Consensus 352 -~~iip~~t~~y~ 363 (800)
++-+-.+...+.
T Consensus 162 ~~~~~~di~~t~~ 174 (268)
T PRK15116 162 TQIQVVDLAKTIQ 174 (268)
T ss_pred CeEEEEeeecccC
Confidence 344444444443
No 33
>PRK07877 hypothetical protein; Provisional
Probab=99.96 E-value=5.2e-29 Score=293.82 Aligned_cols=183 Identities=23% Similarity=0.330 Sum_probs=160.5
Q ss_pred cccccccccccCCCCCCCccCCCCccCcchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceee
Q 003715 167 LQFFYFDSVESLPSEPLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTI 246 (800)
Q Consensus 167 ~q~~~~d~~~~l~~~~l~~~~~~~~~~Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~l 246 (800)
..|+||---+.+. ..++++++. ..||+||+.+||.++|++|++++|+||||| +||.++.+|+++||+ |+|+|
T Consensus 65 ~~w~~~pw~~~~v-~~~~~~~~~--~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvv----G~l~l 136 (722)
T PRK07877 65 GRWVYYPWRRTVV-HLLGPREFR--AVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLC----GELRL 136 (722)
T ss_pred CcEEEecchhhee-ecCCHHHhh--HHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCC----CeEEE
Confidence 4789987666555 345666663 389999999999999999999999999997 999999999999942 99999
Q ss_pred cCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHH
Q 003715 247 TDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARL 326 (800)
Q Consensus 247 iD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~ 326 (800)
+|+|.||.|||||| +++..|||++|+++++++|+++||+++|+++..++++++. ++|++++|+||+|+||+++|.
T Consensus 137 vD~D~ve~sNLnRq-~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~----~~~l~~~DlVvD~~D~~~~R~ 211 (722)
T PRK07877 137 ADFDTLELSNLNRV-PAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNV----DAFLDGLDVVVEECDSLDVKV 211 (722)
T ss_pred EcCCEEcccccccc-cCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHH----HHHhcCCCEEEECCCCHHHHH
Confidence 99999999999999 5888999999999999999999999999999999986553 467889999999999999999
Q ss_pred HHhhhcccccccEEEecccCcccceE----EEeCCcccccCCC
Q 003715 327 YIDQRCLYFQKPLLESGTLGAKCNTQ----MVIPHLTENYGAS 365 (800)
Q Consensus 327 ~v~~~c~~~~~pli~sg~~G~~G~v~----~iip~~t~~y~~~ 365 (800)
.+|+.|+.+++|+|.++..+ |++. -+.| .++||.|.
T Consensus 212 ~ln~~a~~~~iP~i~~~~~~--g~~~~e~~~~~p-~~pc~~cl 251 (722)
T PRK07877 212 LLREAARARRIPVLMATSDR--GLLDVERFDLEP-DRPILHGL 251 (722)
T ss_pred HHHHHHHHcCCCEEEEcCCC--CCcCcceeeeCC-CCceeecc
Confidence 99999999999999888544 6652 2356 68999994
No 34
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.96 E-value=1.7e-28 Score=255.26 Aligned_cols=155 Identities=31% Similarity=0.424 Sum_probs=137.8
Q ss_pred cCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHH
Q 003715 202 FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAA 281 (800)
Q Consensus 202 ~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~ 281 (800)
+|.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|+|.|+.||||||+++..+|||++|+++++++++
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GV-----g~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~ 75 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGV-----GKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIR 75 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHH
Confidence 69999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccc-eEEEeCCccc
Q 003715 282 LINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN-TQMVIPHLTE 360 (800)
Q Consensus 282 ~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~-v~~iip~~t~ 360 (800)
++||+++|+++...+.+++.. ..+..++|+||+|+|+..+|..++++|+.+++|+|.++..|.+.. .++-+-.+..
T Consensus 76 ~inP~~~V~~~~~~i~~~~~~---~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~ 152 (231)
T cd00755 76 DINPECEVDAVEEFLTPDNSE---DLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISK 152 (231)
T ss_pred HHCCCcEEEEeeeecCHhHHH---HHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEec
Confidence 999999999999988865432 122357999999999999999999999999999999988887665 4555555555
Q ss_pred ccCC
Q 003715 361 NYGA 364 (800)
Q Consensus 361 ~y~~ 364 (800)
++.|
T Consensus 153 t~~~ 156 (231)
T cd00755 153 TSGD 156 (231)
T ss_pred cccC
Confidence 5543
No 35
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.95 E-value=2.2e-28 Score=252.13 Aligned_cols=155 Identities=28% Similarity=0.384 Sum_probs=139.3
Q ss_pred CcchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccH
Q 003715 193 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 272 (800)
Q Consensus 193 ~Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~K 272 (800)
.-++++...||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.|+.+||+||+++ .+|+|++|
T Consensus 9 ~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~K 82 (212)
T PRK08644 9 EFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGV-----GNLKLVDFDVVEPSNLNRQQYF-ISQIGMPK 82 (212)
T ss_pred HHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCEeccccccccEee-hhhCCChH
Confidence 44667778899999999999999999999999999999999999 9999999999999999999977 56999999
Q ss_pred HHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccc-cccEEEecccCcccce
Q 003715 273 STVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF-QKPLLESGTLGAKCNT 351 (800)
Q Consensus 273 a~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~-~~pli~sg~~G~~G~v 351 (800)
+++++++++++||+++++++...+++++. +++++++|+||+|+|+.++|..+++.|+.+ ++|+|.++..|..|++
T Consensus 83 a~~a~~~l~~lnp~v~v~~~~~~i~~~~~----~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~ 158 (212)
T PRK08644 83 VEALKENLLEINPFVEIEAHNEKIDEDNI----EELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDS 158 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCHHHH----HHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCc
Confidence 99999999999999999999988875432 367899999999999999999999999998 9999988767777776
Q ss_pred EEEeCC
Q 003715 352 QMVIPH 357 (800)
Q Consensus 352 ~~iip~ 357 (800)
..+.|.
T Consensus 159 ~~~~~~ 164 (212)
T PRK08644 159 NSIKTR 164 (212)
T ss_pred eEEEec
Confidence 655553
No 36
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.95 E-value=2.5e-28 Score=234.37 Aligned_cols=134 Identities=33% Similarity=0.640 Sum_probs=121.8
Q ss_pred HcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEE
Q 003715 211 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 290 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~ 290 (800)
+++||+|+|+||+||+++++|+++|+ |+|+|+|.|.|+++||+||++++.+|+|++|+++++++++++||+++++
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv-----~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~ 75 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGV-----GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVE 75 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTT-----SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCC-----CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeee
Confidence 57899999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEE
Q 003715 291 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQM 353 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v~~ 353 (800)
++...+..+.. .++++++|+||+|+|+.++|.+++++|+.+++|+|++|+.|+.|+++.
T Consensus 76 ~~~~~~~~~~~----~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 76 AIPEKIDEENI----EELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp EEESHCSHHHH----HHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred eeecccccccc----cccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 99998853322 356789999999999999999999999999999999999999999864
No 37
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.95 E-value=2.3e-28 Score=297.89 Aligned_cols=152 Identities=22% Similarity=0.355 Sum_probs=143.9
Q ss_pred cCcchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCcc
Q 003715 192 NSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 271 (800)
Q Consensus 192 ~~Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~ 271 (800)
..||+||+++||.++|++|++++|+|+||||+|+|+||||+++|| |+|+|+|+|.|+.+||+||||++++|||++
T Consensus 4 ~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGV-----g~iti~D~d~v~~sdL~rQf~~~~~dIGk~ 78 (1008)
T TIGR01408 4 EALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGV-----KSVTLHDTEKCQAWDLSSNFFLSEDDVGRN 78 (1008)
T ss_pred HhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCeecHhhCCCceecchHHcCch
Confidence 379999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhccccc--ccEEEecccCccc
Q 003715 272 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQ--KPLLESGTLGAKC 349 (800)
Q Consensus 272 Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~--~pli~sg~~G~~G 349 (800)
||++++++|+++||.++|+++...+. .++++++|+||+|.|+.+.+..+|+.|+.++ +|+|.+++.|+.|
T Consensus 79 Kaea~~~~L~eLNp~V~V~~~~~~l~--------~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G 150 (1008)
T TIGR01408 79 RAEAVVKKLAELNPYVHVSSSSVPFN--------EEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFG 150 (1008)
T ss_pred HHHHHHHHHHHHCCCceEEEecccCC--------HHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEE
Confidence 99999999999999999999987553 3578999999999999999999999999999 8999999999999
Q ss_pred ceEEEeC
Q 003715 350 NTQMVIP 356 (800)
Q Consensus 350 ~v~~iip 356 (800)
++.+-+.
T Consensus 151 ~vf~D~g 157 (1008)
T TIGR01408 151 SLFCDFG 157 (1008)
T ss_pred EEEecCC
Confidence 8866433
No 38
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.94 E-value=6.6e-27 Score=226.63 Aligned_cols=133 Identities=37% Similarity=0.602 Sum_probs=125.4
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEee
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 293 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~ 293 (800)
+|+||||||+||+++++|+++|+ |+|+|+|+|.|+.+||+||++++.+|+|++|+++++++++++||+++++.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-----~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~ 75 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-----GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVP 75 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEEEe
Q 003715 294 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVI 355 (800)
Q Consensus 294 ~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v~~ii 355 (800)
..+..... .++++++|+||+|.|+.++|..+++.|+.+++|+|++|+.|+.|+++++.
T Consensus 76 ~~~~~~~~----~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 76 EGISEDNL----DDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred eecChhhH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 87764332 46789999999999999999999999999999999999999999998876
No 39
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.94 E-value=7.8e-27 Score=267.12 Aligned_cols=145 Identities=23% Similarity=0.314 Sum_probs=128.7
Q ss_pred HHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCcc---CccHHHHHHHHH
Q 003715 204 SKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI---GQAKSTVAASAA 280 (800)
Q Consensus 204 ~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dI---G~~Ka~va~~~l 280 (800)
.-+.++|++++|+||||||+||++|++|+++|| |+|+|+|+|+|+.|||+||+||+.+|+ |++||++|+++|
T Consensus 330 ~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GV-----g~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~L 404 (664)
T TIGR01381 330 DLQLERYSQLKVLLLGAGTLGCNVARCLIGWGV-----RHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKAL 404 (664)
T ss_pred hhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCC-----CeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHH
Confidence 344589999999999999999999999999999 999999999999999999999999999 999999999999
Q ss_pred HHHCCCCeEEEeeccC-------Ccchh-ccc-----chhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCc
Q 003715 281 ALINPHLNTEALQIRA-------NPETE-NVF-----NDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGA 347 (800)
Q Consensus 281 ~~~np~v~i~~~~~~v-------~~~~~-~~~-----~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~ 347 (800)
+++||+++++++..++ +++.. .+. -.++++++|+|++|+||.++|..++.+|..+++|+|.++ .|+
T Consensus 405 k~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-lGf 483 (664)
T TIGR01381 405 KRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISAA-LGF 483 (664)
T ss_pred HHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-ecc
Confidence 9999999999998875 32210 000 135789999999999999999999999999999999985 899
Q ss_pred ccceEEE
Q 003715 348 KCNTQMV 354 (800)
Q Consensus 348 ~G~v~~i 354 (800)
.|++.+.
T Consensus 484 dg~lvmr 490 (664)
T TIGR01381 484 DSYVVMR 490 (664)
T ss_pred ceEEEEE
Confidence 9987554
No 40
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.94 E-value=5.2e-27 Score=237.54 Aligned_cols=149 Identities=27% Similarity=0.370 Sum_probs=138.8
Q ss_pred cCcchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCcc
Q 003715 192 NSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 271 (800)
Q Consensus 192 ~~Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~ 271 (800)
..||.|..+++|.++.++|++++|+|||+||+||.++..|+|+|+ |+|+|||+|.|+.+|+|||.-....+||++
T Consensus 10 ~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGi-----g~itlID~D~v~vTN~NRQi~A~~~~iGk~ 84 (263)
T COG1179 10 RQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGI-----GRITLIDMDDVCVTNTNRQIHALLGDIGKP 84 (263)
T ss_pred HHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCC-----CeEEEEecccccccccchhhHhhhhhcccH
Confidence 479999999999999999999999999999999999999999999 999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcc
Q 003715 272 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAK 348 (800)
Q Consensus 272 Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~ 348 (800)
|+++++++++.+||.++|.++...+++++.+. -+..++|+||||.|++.++..+-.+|+.+++|+|.+|-.|.+
T Consensus 85 Kv~vm~eri~~InP~c~V~~~~~f~t~en~~~---~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k 158 (263)
T COG1179 85 KVEVMKERIKQINPECEVTAINDFITEENLED---LLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGK 158 (263)
T ss_pred HHHHHHHHHHhhCCCceEeehHhhhCHhHHHH---HhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCC
Confidence 99999999999999999999999999877542 234689999999999999999999999999999988755543
No 41
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.94 E-value=2.8e-27 Score=257.33 Aligned_cols=156 Identities=19% Similarity=0.197 Sum_probs=143.8
Q ss_pred CCCccCCCCccCcchhhhhh---cC-HHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCC
Q 003715 182 PLDPRDLQPLNSRYDAQISV---FG-SKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNL 257 (800)
Q Consensus 182 ~l~~~~~~~~~~Rydrqi~l---~G-~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNL 257 (800)
+++..+. .||.||+.+ || .++|++|++++|+ |||+||.++..||. || |+|+|+|.|.|+.|||
T Consensus 46 ~l~~~~~----~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GV-----g~L~ivD~D~Ve~SNL 112 (318)
T TIGR03603 46 TLTKFNL----ITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NV-----GALFISDKTYFQETAE 112 (318)
T ss_pred ccCHHHH----HHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CC-----CEEEEEcCCEechhhH
Confidence 4566666 899999998 55 4589999999999 99999999999999 99 9999999999999999
Q ss_pred ccccccccCccCccHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHH--Hhhhcccc
Q 003715 258 SRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLY--IDQRCLYF 335 (800)
Q Consensus 258 nRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~--v~~~c~~~ 335 (800)
+ +||+++|||++|+++|++++.++||+++++.+. ++++++|+|++|+||+.+|.. +|+.|+.+
T Consensus 113 ~--~L~~~~diG~~K~~~a~~~L~~lnp~v~i~~~~-------------~li~~~DlVid~tDn~~~r~L~~iN~ac~~~ 177 (318)
T TIGR03603 113 I--DLYSKEFILKKDIRDLTSNLDALELTKNVDELK-------------DLLKDYNYIIICTEHSNISLLRGLNKLSKET 177 (318)
T ss_pred H--HHhChhhcCcHHHHHHHHHHHHhCCCCEEeeHH-------------HHhCCCCEEEECCCCccHhHHHHHHHHHHHH
Confidence 9 999999999999999999999999999997642 456889999999999999966 99999999
Q ss_pred cccEEEecccCcccceEEEeCCcccccCCC
Q 003715 336 QKPLLESGTLGAKCNTQMVIPHLTENYGAS 365 (800)
Q Consensus 336 ~~pli~sg~~G~~G~v~~iip~~t~~y~~~ 365 (800)
++|+|.++..|+.|++.+++|+.|+||.|.
T Consensus 178 ~~PlV~gav~g~~Gqv~~~~P~~t~C~~Cl 207 (318)
T TIGR03603 178 KKPNTIAFIDGPFVFITCTLPPETGCFECL 207 (318)
T ss_pred CCCEEEEEEccCEEEEEEEeCCCCCcHHHc
Confidence 999999999999999998889889999995
No 42
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.93 E-value=1.3e-25 Score=238.06 Aligned_cols=133 Identities=23% Similarity=0.301 Sum_probs=118.5
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCc--cCccHHHHHHHHHHHHCCCCeEEE
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWN--IGQAKSTVAASAAALINPHLNTEA 291 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~d--IG~~Ka~va~~~l~~~np~v~i~~ 291 (800)
||+||||||+||++|++|+++|| |+|+|+|+|.|+.|||+||+||+.+| +|++||++|+++|+++||++++++
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-----g~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~ 75 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-----RHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATG 75 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEE
Confidence 69999999999999999999999 99999999999999999999999999 999999999999999999999999
Q ss_pred eeccCCc-------c-------hhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEE
Q 003715 292 LQIRANP-------E-------TENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQM 353 (800)
Q Consensus 292 ~~~~v~~-------~-------~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v~~ 353 (800)
+...+.. . +... -.++++++|+|++|+|+.++|..++.+|..+++|+|+ +..|+.|++.+
T Consensus 76 ~~~~Ipmpgh~~~~~~~~~~~~~~~~-l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~-aalGfdg~lvm 149 (307)
T cd01486 76 IVLSIPMPGHPISESEVPSTLKDVKR-LEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN-AALGFDSYLVM 149 (307)
T ss_pred eeeeccccccccccccccccccCHHH-HHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE-EEeccceEEEE
Confidence 9876510 0 0000 1367899999999999999999999999999999998 57799888644
No 43
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.93 E-value=1.5e-25 Score=224.26 Aligned_cols=142 Identities=28% Similarity=0.413 Sum_probs=127.2
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEee
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 293 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~ 293 (800)
||+|+||||+||+++++|+++|+ |+|+|+|.|.|+.+||+||+++ .+|+|++|+++++++++++||+++++++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~ 74 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-----GNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAIN 74 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEE
Confidence 69999999999999999999999 9999999999999999999966 56999999999999999999999999999
Q ss_pred ccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccc-cccEEEecccCcccceEEEeCCc--ccccCCC
Q 003715 294 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF-QKPLLESGTLGAKCNTQMVIPHL--TENYGAS 365 (800)
Q Consensus 294 ~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~-~~pli~sg~~G~~G~v~~iip~~--t~~y~~~ 365 (800)
.++.+++. .++++++|+||+|+||.++|..+++.|.+. ++|+|.++..|+.|++..+.|.. ..||.|.
T Consensus 75 ~~~~~~~~----~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 75 IKIDENNL----EGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred eecChhhH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 88875331 467899999999999999999888777776 99999999999999988777654 4588875
No 44
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.92 E-value=2.1e-25 Score=227.87 Aligned_cols=114 Identities=24% Similarity=0.410 Sum_probs=105.9
Q ss_pred CcchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccH
Q 003715 193 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 272 (800)
Q Consensus 193 ~Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~K 272 (800)
.||+||+++||.++|++|++++|+|||+||+|||++|||+++|| |+|+|+|.|.|+.+||+|||+++. ++|++|
T Consensus 7 ~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGV-----GsItIvDdD~Ve~SNL~RQfl~~~-dvGk~K 80 (287)
T PTZ00245 7 VRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGV-----RAVAVADEGLVTDADVCTNYLMQG-EAGGTR 80 (287)
T ss_pred HHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCC-----CeEEEecCCccchhhhcccccccc-ccCCcH
Confidence 89999999999999999999999999999999999999999999 999999999999999999999998 789999
Q ss_pred HHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCH
Q 003715 273 STVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNV 322 (800)
Q Consensus 273 a~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~ 322 (800)
+++++++++++||+++|+++..++++. .+|.+|+-+.-..
T Consensus 81 AeaAa~~L~eLNP~V~V~~i~~rld~~----------n~fqvvV~~~~~l 120 (287)
T PTZ00245 81 GARALGALQRLNPHVSVYDAVTKLDGS----------SGTRVTMAAVITE 120 (287)
T ss_pred HHHHHHHHHHHCCCcEEEEcccccCCc----------CCceEEEEEcccH
Confidence 999999999999999999998877542 4788888775443
No 45
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.92 E-value=2e-24 Score=220.68 Aligned_cols=155 Identities=29% Similarity=0.418 Sum_probs=127.5
Q ss_pred hhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHH
Q 003715 198 QISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAA 277 (800)
Q Consensus 198 qi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~ 277 (800)
+..-+|.+.|++|++++|+||||||+||+++++|+++|| |+++|+|.|.||.+||+||++ ..+|+|++|+++++
T Consensus 7 ~~~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~~-~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 7 LVARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGI-----GKLILVDFDVVEPSNLNRQQY-KASQVGEPKTEALK 80 (200)
T ss_pred HHHhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEECCCEEcccccccccC-ChhhCCCHHHHHHH
Confidence 445689999999999999999999999999999999999 999999999999999999975 55799999999999
Q ss_pred HHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhc-cccc-ccEEEecccCcccce--EE
Q 003715 278 SAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRC-LYFQ-KPLLESGTLGAKCNT--QM 353 (800)
Q Consensus 278 ~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c-~~~~-~pli~sg~~G~~G~v--~~ 353 (800)
+.++++||+++++++..+++.++. .++++++|+||+|+||.++|..+.+.| ..++ .+++.+ .|..|+. ..
T Consensus 81 ~~l~~inp~~~i~~~~~~i~~~~~----~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~--~g~~g~~~~~~ 154 (200)
T TIGR02354 81 ENISEINPYTEIEAYDEKITEENI----DKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAA--SGLAGYDDANS 154 (200)
T ss_pred HHHHHHCCCCEEEEeeeeCCHhHH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEE--eccccCCCCce
Confidence 999999999999999998875432 357889999999999999998866555 4444 455543 3444443 33
Q ss_pred EeC-C-cccccCC
Q 003715 354 VIP-H-LTENYGA 364 (800)
Q Consensus 354 iip-~-~t~~y~~ 364 (800)
+.+ . ...||.|
T Consensus 155 ~~~~~~~~~~~~~ 167 (200)
T TIGR02354 155 IKTRKISKHFYLC 167 (200)
T ss_pred EEecccCCCEEEc
Confidence 423 2 2457877
No 46
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.9e-25 Score=228.88 Aligned_cols=160 Identities=22% Similarity=0.447 Sum_probs=147.6
Q ss_pred CCCccCCCCccCcchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCcccc
Q 003715 182 PLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQF 261 (800)
Q Consensus 182 ~l~~~~~~~~~~Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQf 261 (800)
.++++++ .-||||||+||.++|++|+++||+|+|.+|+|.|++|||+++|| |+++++|.-.|....++-||
T Consensus 5 else~E~----alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV-----~~ltlLD~~~Vt~Ed~~~qF 75 (331)
T KOG2014|consen 5 ELSEQEI----ALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGV-----GSLTLLDDRLVTEEDVGAQF 75 (331)
T ss_pred hhhHHHH----HHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhccc-----ceeEEeeccccchhcCCcee
Confidence 4566666 78999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred ccccCccCccHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEE
Q 003715 262 LFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLE 341 (800)
Q Consensus 262 lf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~ 341 (800)
|.+.+++|+.||++..++++.+||.++|....+.+... +.+||.+||+||-.--+.+++..+|..|+.++++++.
T Consensus 76 li~~~~vg~~raeas~erl~~LNPmV~v~~d~edl~ek-----~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a 150 (331)
T KOG2014|consen 76 LISASSVGQTRAEASLERLQDLNPMVDVSVDKEDLSEK-----DEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYA 150 (331)
T ss_pred EEchhhhchHHHHHHHHHHHhcCCceEEEechhhhhhc-----chhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEe
Confidence 99999999999999999999999999999888776643 3579999999987777888899999999999999999
Q ss_pred ecccCcccceEEEe
Q 003715 342 SGTLGAKCNTQMVI 355 (800)
Q Consensus 342 sg~~G~~G~v~~ii 355 (800)
+++.|+.|++..-+
T Consensus 151 ~d~~g~~Gy~F~dL 164 (331)
T KOG2014|consen 151 GDCFGLCGYAFADL 164 (331)
T ss_pred ccccceeeeeeeeh
Confidence 99999999876544
No 47
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-24 Score=233.47 Aligned_cols=180 Identities=23% Similarity=0.352 Sum_probs=153.4
Q ss_pred cCcchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCcc
Q 003715 192 NSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 271 (800)
Q Consensus 192 ~~Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~ 271 (800)
..|||||+|+||..+|..|..++||++|||++|||++|||++.|| |+++++|...|+.+++..+|+...+++|++
T Consensus 7 ~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gi-----gs~tvvd~~~v~~~d~g~nF~~~~~~~Gks 81 (523)
T KOG2016|consen 7 KTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGI-----GSFTVVDGSKVEQGDLGNNFFLDAKSIGKS 81 (523)
T ss_pred hhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhccccc-----ccEEEEecceeeecchhhHHHHHHHhhchh
Confidence 489999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccce
Q 003715 272 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNT 351 (800)
Q Consensus 272 Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v 351 (800)
||++..+.++++||+++-....+. ++.....+..|+.+|++|+.+--+.+.-..+.++|+.+++|++.+-+.|+.|.+
T Consensus 82 rA~a~~e~LqeLN~~V~~~~vee~--p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~i 159 (523)
T KOG2016|consen 82 RAEATLEFLQELNPSVSGSFVEES--PDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGTI 159 (523)
T ss_pred HHHHHHHHHHHhChhhhcCccccC--hhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEEE
Confidence 999999999999999877666542 233333467899999999988777788889999999999999999999999999
Q ss_pred EEEeCCc--ccccCCCCCCCCC-CCCCccc
Q 003715 352 QMVIPHL--TENYGASRDPPEK-QAPMCTV 378 (800)
Q Consensus 352 ~~iip~~--t~~y~~~~~p~~~-~~p~ctl 378 (800)
++.+... .++++..+.++.+ +.||..|
T Consensus 160 RI~ikEH~iieshPD~~~~DLRL~nPwpeL 189 (523)
T KOG2016|consen 160 RISIKEHTIIESHPDNPLDDLRLDNPWPEL 189 (523)
T ss_pred EEEeeeccccccCCCCcccccccCCCcHHH
Confidence 9988642 3444443322222 4555544
No 48
>PRK06153 hypothetical protein; Provisional
Probab=99.90 E-value=1.7e-23 Score=228.30 Aligned_cols=130 Identities=17% Similarity=0.144 Sum_probs=118.4
Q ss_pred HHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCcccc-ccccCccCc--cHHHHHHHHH
Q 003715 204 SKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQF-LFRDWNIGQ--AKSTVAASAA 280 (800)
Q Consensus 204 ~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQf-lf~~~dIG~--~Ka~va~~~l 280 (800)
...|++|++++|+||||||+||.++..||++|| |+|+|+|+|.|+.||||||+ +|+.+|+|+ +|++++++++
T Consensus 168 ~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GV-----geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl 242 (393)
T PRK06153 168 GALSAKLEGQRIAIIGLGGTGSYILDLVAKTPV-----REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRY 242 (393)
T ss_pred HHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCC-----CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHH
Confidence 467999999999999999999999999999999 99999999999999999998 678889999 9999999999
Q ss_pred HHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEeccc
Q 003715 281 ALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTL 345 (800)
Q Consensus 281 ~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~ 345 (800)
.++||+ |.++...+++++. +.+.++|+||+|+|+.++|..+++.|..+++|+|++|..
T Consensus 243 ~~in~~--I~~~~~~I~~~n~-----~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 243 SNMRRG--IVPHPEYIDEDNV-----DELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred HHhCCe--EEEEeecCCHHHH-----HHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec
Confidence 999984 6778777765432 346899999999999999999999999999999998853
No 49
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=99.89 E-value=7.6e-24 Score=226.10 Aligned_cols=83 Identities=64% Similarity=1.102 Sum_probs=80.9
Q ss_pred CCCCCCCCcEeEEEcCCceEEEecCCCCcCCcccCcEEEEEeeeeEeecccHHHHhcCCCccccccCccCCCchhHHHHH
Q 003715 1 MTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAF 80 (800)
Q Consensus 1 m~~ln~~~~~~i~v~~~~~f~i~~dt~~~~~y~~gg~~~qvK~p~~~~f~sL~e~l~~p~~~~~~d~~k~~~~~~l~~~~ 80 (800)
|+|||+++|++|+|++||+|+| |||++|++|++||+++|||
T Consensus 203 m~~lN~~~~~~v~~~~~~~f~i-~d~~~~~~y~~gG~~~qvK-------------------------------------- 243 (286)
T cd01491 203 MTELNGCEPRKIKVKGPYTFSI-GDTSSFSEYIRGGIVTQVK-------------------------------------- 243 (286)
T ss_pred chhhCCCccEEEEECCCCeEEE-CcCcCcCccccCcEEEEEe--------------------------------------
Confidence 8999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHhhcccccchhHHHhhhhHHHHHHHhhc
Q 003715 81 QALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACS 160 (800)
Q Consensus 81 ~aL~~f~~~~gr~P~~~~~~Da~~l~~i~~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~Pv~AiiGGivaQEVIKait 160 (800)
++|+||++||++||||||+||
T Consensus 244 -----------------------------------------------------------~~~~~~~~g~~~~q~~~~~~~ 264 (286)
T cd01491 244 -----------------------------------------------------------LSPMAAFFGGLAAQEVLKACS 264 (286)
T ss_pred -----------------------------------------------------------cccHHHHhhhHHHHHHHHHcC
Confidence 789999999999999999999
Q ss_pred CccccccccccccccccCCCC
Q 003715 161 GKFHPLLQFFYFDSVESLPSE 181 (800)
Q Consensus 161 ~k~~Pi~q~~~~d~~~~l~~~ 181 (800)
|||+||+||||||++|+||..
T Consensus 265 ~~~~p~~q~~~~~~~~~l~~~ 285 (286)
T cd01491 265 GKFTPLKQWLYFDALECLPED 285 (286)
T ss_pred CCCCceeeEEEecHHHhcCCC
Confidence 999999999999999999953
No 50
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.87 E-value=9.2e-23 Score=171.28 Aligned_cols=67 Identities=48% Similarity=0.806 Sum_probs=55.9
Q ss_pred cccccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhhCC
Q 003715 599 QFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGG 667 (800)
Q Consensus 599 ~FeKDDd~n~hidFV~AasNLRA~ny~I~~~~~~~~K~iAG~IIPAIaTTtA~VaGl~~lEl~K~l~~~ 667 (800)
+|||||+. |++||+|+|||||++||||+.|++++++++|+||||++||||+|||++|+|++|+++++
T Consensus 1 ~Fd~dd~~--h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~~ 67 (67)
T PF02134_consen 1 EFDKDDPL--HLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQNC 67 (67)
T ss_dssp ---TTSHH--HHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCCcHH--HHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhcC
Confidence 59999997 99999999999999999999999999999999999999999999999999999999863
No 51
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.85 E-value=1.4e-21 Score=199.30 Aligned_cols=186 Identities=25% Similarity=0.438 Sum_probs=153.7
Q ss_pred Ccchhhhhh--cC-HHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccC
Q 003715 193 SRYDAQISV--FG-SKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 269 (800)
Q Consensus 193 ~Rydrqi~l--~G-~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG 269 (800)
.-|+|.+.| .| ....++|+...|.|||.||+||-.|..|.++|+ |++.+.|.|.||..|+||- ||+.+..|
T Consensus 60 NPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGI-----GkLlLfDYDkVElANMNRL-Ff~P~QaG 133 (422)
T KOG2336|consen 60 NPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGI-----GKLLLFDYDKVELANMNRL-FFQPDQAG 133 (422)
T ss_pred ChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCc-----ceEEEeecchhhhhccccc-ccCccccc
Confidence 569998877 34 456889999999999999999999999999999 9999999999999999996 57888999
Q ss_pred ccHHHHHHHHHHHHCCCCeEEEeeccCCcch-hccc-----chhhc--cCCCEEEEccCCHHHHHHHhhhcccccccEEE
Q 003715 270 QAKSTVAASAAALINPHLNTEALQIRANPET-ENVF-----NDTFW--ENLNVVVNALDNVNARLYIDQRCLYFQKPLLE 341 (800)
Q Consensus 270 ~~Ka~va~~~l~~~np~v~i~~~~~~v~~~~-~~~~-----~~~f~--~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~ 341 (800)
.+|+++|++.|..+||++.++.|.-.++.-. -..| +..+. +..|+|+.|+||++||..+|..|-..+.-|++
T Consensus 134 lsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~WmE 213 (422)
T KOG2336|consen 134 LSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQTWME 213 (422)
T ss_pred chHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999999999999999987776311 1111 11111 35899999999999999999999999999999
Q ss_pred eccc--CcccceEEEeCCcccccCCCCCC------CC---CCCCCccccCCCCCc
Q 003715 342 SGTL--GAKCNTQMVIPHLTENYGASRDP------PE---KQAPMCTVHSFPHNI 385 (800)
Q Consensus 342 sg~~--G~~G~v~~iip~~t~~y~~~~~p------~~---~~~p~ctl~~fP~~~ 385 (800)
+|+. ...|++|.++|+.|.||.|.+.- ++ |.-.+|. .+.|.+.
T Consensus 214 SGVSEnAVSGHIQ~i~PGetACFACaPPlVVAs~IDErTLKReGVCA-ASLPTTM 267 (422)
T KOG2336|consen 214 SGVSENAVSGHIQLIVPGETACFACAPPLVVASGIDERTLKREGVCA-ASLPTTM 267 (422)
T ss_pred ccCccccccceeEEecCCccceecccCceeeecCcchhhhhhcceee-ecCcchH
Confidence 9986 47899999999999999996531 11 2345665 4566654
No 52
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.1e-19 Score=207.60 Aligned_cols=148 Identities=25% Similarity=0.375 Sum_probs=139.7
Q ss_pred CcchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccH
Q 003715 193 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 272 (800)
Q Consensus 193 ~Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~K 272 (800)
+-|+||+.++|.++++++..++|||.|+||+|-|+||||+++|| +++||-|...+..++|+-||++++.|||+++
T Consensus 18 ~LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGV-----ksvTlhD~~~~~~~DLssqf~L~E~DigknR 92 (1013)
T KOG2012|consen 18 SLYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGV-----KSVTLHDPRPVQLSDLSSQFYLSEEDIGKNR 92 (1013)
T ss_pred hhhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhcc-----ceEEeeCCCcccHHhhccceeeeHHhcCCch
Confidence 67999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceE
Q 003715 273 STVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQ 352 (800)
Q Consensus 273 a~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v~ 352 (800)
|++..+++.++|+.|.|.++....+ .+|+++|++|+-+--..+....++++|+++++.+|.+-+-|..|++.
T Consensus 93 A~as~~~LaeLN~yV~V~v~t~~~~--------~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lF 164 (1013)
T KOG2012|consen 93 AEASVEKLAELNNYVPVVVLTGPLT--------EEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLFGQLF 164 (1013)
T ss_pred HHHHHHHHHHhhcceeeEEecCccc--------HHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhhhhhh
Confidence 9999999999999999999987544 47889999998877778888899999999999999999999999875
Q ss_pred E
Q 003715 353 M 353 (800)
Q Consensus 353 ~ 353 (800)
.
T Consensus 165 C 165 (1013)
T KOG2012|consen 165 C 165 (1013)
T ss_pred c
Confidence 4
No 53
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.1e-19 Score=188.34 Aligned_cols=150 Identities=24% Similarity=0.322 Sum_probs=135.3
Q ss_pred CcchhhhhhcCHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccH
Q 003715 193 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 272 (800)
Q Consensus 193 ~Rydrqi~l~G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~K 272 (800)
+...|++.+||.+++++|.++=|+||||||+||.++-.|+++|+ ++|.|+|+|.|..|-||||....-.|||.||
T Consensus 55 eqLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~-----qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK 129 (430)
T KOG2018|consen 55 EQLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGV-----QKIRIVDFDQVSLSSLNRHSCATLADVGTPK 129 (430)
T ss_pred HHHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcC-----ceEEEechhhccHhhhhhhhhhhHhhcCCch
Confidence 33457788999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccc
Q 003715 273 STVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 350 (800)
Q Consensus 273 a~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~ 350 (800)
+.++++.++++.|.++|.+....+++++++ +-...+.|+|++|+||++++..+-++|..+++++|.+--.+.+..
T Consensus 130 ~~clkkh~skiaPw~eIdar~~l~~~~s~e---dll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksD 204 (430)
T KOG2018|consen 130 VMCLKKHFSKIAPWCEIDARNMLWTSSSEE---DLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSD 204 (430)
T ss_pred HHHHHHHHHhhCccceecHHHhhcCCCchh---hhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCC
Confidence 999999999999999999998888876643 123457899999999999999999999999999998765555543
No 54
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=8.7e-19 Score=181.96 Aligned_cols=129 Identities=30% Similarity=0.360 Sum_probs=111.9
Q ss_pred eeeeEeecccHHHHhcCCCccccccCccCCCchhHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcccccc
Q 003715 42 KQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADERV 121 (800)
Q Consensus 42 K~p~~~~f~sL~e~l~~p~~~~~~d~~k~~~~~~l~~~~~aL~~f~~~~gr~P~~~~~~Da~~l~~i~~~i~~~~~~~~~ 121 (800)
-+...+.|+|++|+|+.+|. ...-.+.+|...+|++++++..|++.+||.|+...++|.+.++.|.+++++...
T Consensus 194 ~vk~~~~~~~~~Eal~~~~~--~k~k~~~rr~~~~~~ll~v~l~f~~s~~r~pg~~~~~d~erl~~I~~ell~s~~---- 267 (331)
T KOG2014|consen 194 WVKRKVVFPSVKEALSVDWT--KKEKRKPRRTKKLYFLLPVLLKFRTSEGRDPGETSEEDLERLLQIRNELLESET---- 267 (331)
T ss_pred ehhhhhcccCHHHHHhcccc--hhhhhhhhccCcceehHHHHHHHHHhcCCCCccccHHHHHHHHHHHHhhccccc----
Confidence 35678899999999999953 222355678888999999999999999999997789999999999999987332
Q ss_pred cccCHHHHHHHHhhcccccchhHHHhhhhHHHHHHHhhcCccccccccccccccccC
Q 003715 122 EEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESL 178 (800)
Q Consensus 122 ~~i~~~li~~~~~~~~~el~Pv~AiiGGivaQEVIKait~k~~Pi~q~~~~d~~~~l 178 (800)
-++.+++ +|..+.+.|++|+||++|||+||||||+||++..|++|+|+|||+++.
T Consensus 268 -i~pd~~~-~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl~Nff~fdg~~g~ 322 (331)
T KOG2014|consen 268 -IIPDELL-EFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPLNNFFIFDGETGK 322 (331)
T ss_pred -cCCchHH-HHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCcccceEEeecccCc
Confidence 3455666 899999999999999999999999999999999999999999998875
No 55
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=7.6e-16 Score=166.64 Aligned_cols=131 Identities=24% Similarity=0.376 Sum_probs=107.8
Q ss_pred eEeecccHHHHhcCCCcccc---ccCccCCCchhHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhccccc
Q 003715 45 KIINFKPLREALKDPGDFLL---SDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGS-EEDAQKIISLFTNINDNLADER 120 (800)
Q Consensus 45 ~~~~f~sL~e~l~~p~~~~~---~d~~k~~~~~~l~~~~~aL~~f~~~~gr~P~~~~-~~Da~~l~~i~~~i~~~~~~~~ 120 (800)
+++.|+++++... |..... .+-........+|+++||+++|..++|++|+... ++|+..+..++..++.+.+..
T Consensus 382 kv~r~~~~~eey~-~s~~~~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG~~~v~~D~~~lks~a~~~lse~g~~- 459 (523)
T KOG2016|consen 382 KVCRGRTLAEEYE-KSITELIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPGEGPVEIDITKLKSIAASLLSELGLD- 459 (523)
T ss_pred eeeecchhhhhhc-ccchhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHHHhccC-
Confidence 4677999999888 411111 1111123457899999999999999999999332 789999999999999887632
Q ss_pred ccccCHHHHHHHHhhcccccchhHHHhhhhHHHHHHHhhcCcccccccccccccccc
Q 003715 121 VEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVES 177 (800)
Q Consensus 121 ~~~i~~~li~~~~~~~~~el~Pv~AiiGGivaQEVIKait~k~~Pi~q~~~~d~~~~ 177 (800)
...+.++.+.+|||+.++|+|.|+||+||++||||||.+|++|.||+|+|+|||++.
T Consensus 460 ~~~v~d~~i~E~cR~gaaElH~VsAfiGGiaaQEvIKLiTkQyvPidNTFIfnGi~~ 516 (523)
T KOG2016|consen 460 GNAVTDDAIHEICRFGAAELHVVSAFIGGIAAQEVIKLITKQYVPIDNTFIFNGITQ 516 (523)
T ss_pred cccCcHHHHHHHHhcCCchhHHHHHHHhhHHHHHHHHHHHhceecccceeEeccccc
Confidence 246889999999999999999999999999999999999999999999999999864
No 56
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.51 E-value=2.3e-15 Score=115.74 Aligned_cols=45 Identities=49% Similarity=1.046 Sum_probs=40.1
Q ss_pred CcccccCCCCCCCCCCCCCccccCCCCCcchhHHHHHhhhhhhhc
Q 003715 357 HLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLE 401 (800)
Q Consensus 357 ~~t~~y~~~~~p~~~~~p~ctl~~fP~~~~h~i~wa~~~F~~~F~ 401 (800)
++|+||+|..+++++++|+|||++||+.++|||+|||++|+++|+
T Consensus 1 ~~Tecy~c~~~~~~~~~P~CTir~~P~~~~HcI~wAk~~f~~~F~ 45 (45)
T PF10585_consen 1 HVTECYECSPDPPEKSYPVCTIRNFPRTPEHCIEWAKDLFEELFG 45 (45)
T ss_dssp TTS--TTCSGGGSSSSEEHHHHHTS-SSHHHHHHHHHHHHHHHHT
T ss_pred CccccccCCCCCCCCCCCcchhhcCCCCchHHHHHHHHHHHHHhC
Confidence 479999999999999999999999999999999999999999995
No 57
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.45 E-value=1.4e-13 Score=157.41 Aligned_cols=146 Identities=20% Similarity=0.247 Sum_probs=120.6
Q ss_pred Ccchhhhhhc------CHHHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccC
Q 003715 193 SRYDAQISVF------GSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDW 266 (800)
Q Consensus 193 ~Rydrqi~l~------G~~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~ 266 (800)
+||..||..+ |....++.+++||+|+|.||+|+.++.+|+.+|+ ++|+.+|.|.+ .||+||
T Consensus 104 ERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~-----~~I~~vd~D~v-~SNlnR------- 170 (637)
T TIGR03693 104 DRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGF-----PRFHAIVTDAE-EHALDR------- 170 (637)
T ss_pred HHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCC-----CcEEEEecccc-chhhhH-------
Confidence 8999999886 4555666799999999999999999999999999 99999999999 999999
Q ss_pred ccCccHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCH--HHHHHHhhhccccc---ccEEE
Q 003715 267 NIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNV--NARLYIDQRCLYFQ---KPLLE 341 (800)
Q Consensus 267 dIG~~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~--~ar~~v~~~c~~~~---~pli~ 341 (800)
||+. ++.|++ +||+++++.+.... .+++ .+.++++|+||...|+. .--+++|..|+..+ +|++-
T Consensus 171 -IgEl-~e~A~~----~n~~v~v~~i~~~~---~~dl--~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~ 239 (637)
T TIGR03693 171 -IHEL-AEIAEE----TDDALLVQEIDFAE---DQHL--HEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAIC 239 (637)
T ss_pred -HHHH-HHHHHH----hCCCCceEeccCCc---chhH--HHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEE
Confidence 7776 555554 99999999987522 2222 24568999999999955 44568999999999 56667
Q ss_pred ecccCcccceEEEeCCcccccCC
Q 003715 342 SGTLGAKCNTQMVIPHLTENYGA 364 (800)
Q Consensus 342 sg~~G~~G~v~~iip~~t~~y~~ 364 (800)
+|..++.|-+. -|+.|+||.|
T Consensus 240 ~G~~~liGPlf--tPgkTGCWeC 260 (637)
T TIGR03693 240 LKQVGLAGPVF--QQHGDECFEA 260 (637)
T ss_pred cccceeecceE--CCCCCcHHHH
Confidence 78777777654 4999999999
No 58
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.36 E-value=1e-12 Score=144.80 Aligned_cols=139 Identities=22% Similarity=0.299 Sum_probs=115.1
Q ss_pred HHHHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCcc---CccHHHHHHHHHH
Q 003715 205 KLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI---GQAKSTVAASAAA 281 (800)
Q Consensus 205 ~~q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dI---G~~Ka~va~~~l~ 281 (800)
-..+++.+.|+++.|||.+||.||++|.--|| +||+++|..+|..||--||-||.-+|- |++||++|+++|+
T Consensus 333 LnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGv-----RhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk 407 (669)
T KOG2337|consen 333 LNLDIISQTKCLLLGAGTLGCNVARNLLGWGV-----RHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLK 407 (669)
T ss_pred cchhhhhcceeEEecCcccchHHHHHHHhhcc-----ceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHH
Confidence 34579999999999999999999999999999 999999999999999999999998875 5999999999999
Q ss_pred HHCCCCeEEEeeccCCcch----hc----c---c--chhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcc
Q 003715 282 LINPHLNTEALQIRANPET----EN----V---F--NDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAK 348 (800)
Q Consensus 282 ~~np~v~i~~~~~~v~~~~----~~----~---~--~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~ 348 (800)
+|+|.+.-+.+.-.+.... +. . + =+..++..|+|+-.+|..++|..-.-+|...+|-+|++. +|+.
T Consensus 408 ~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaA-LGFD 486 (669)
T KOG2337|consen 408 EIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAA-LGFD 486 (669)
T ss_pred HhCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeee-cccc
Confidence 9999998777654442111 00 0 0 034678999999999999999988878888888888654 4554
Q ss_pred c
Q 003715 349 C 349 (800)
Q Consensus 349 G 349 (800)
.
T Consensus 487 s 487 (669)
T KOG2337|consen 487 S 487 (669)
T ss_pred e
Confidence 3
No 59
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.36 E-value=2.3e-12 Score=145.48 Aligned_cols=104 Identities=29% Similarity=0.504 Sum_probs=86.0
Q ss_pred chhHHHHHHHHHHHHHH-hCCCCCCCC----------------------HHHHHHHHHHHHHHHHhcccccccccCHHHH
Q 003715 73 PPVLHLAFQALDKFIQE-LGRFPVAGS----------------------EEDAQKIISLFTNINDNLADERVEEIDHKLL 129 (800)
Q Consensus 73 ~~~l~~~~~aL~~f~~~-~gr~P~~~~----------------------~~Da~~l~~i~~~i~~~~~~~~~~~i~~~li 129 (800)
....+.+.+||.+|.++ ||.+|-+.. ..|++++..++.++.+..+. ..+.|+++.+
T Consensus 286 ~~~fwi~~~alk~F~~~~~g~lPl~G~lPDM~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~-~~~~I~~~~i 364 (425)
T cd01493 286 SSSFWIMARALKEFVAEENGLLPLPGTLPDMTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGR-SPDSISDKEI 364 (425)
T ss_pred CchHHHHHHHHHHHHHhcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCHHHH
Confidence 34578889999999988 888886532 57888888888888776652 2357999999
Q ss_pred HHHHhhc--------ccccchhHHHhhhhHHHHHHHhhcCcccccccccccccccc
Q 003715 130 CHFAFGA--------RAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVES 177 (800)
Q Consensus 130 ~~~~~~~--------~~el~Pv~AiiGGivaQEVIKait~k~~Pi~q~~~~d~~~~ 177 (800)
+.||+.+ ..--+|+||++||++||||||++|+||.|++|+|+|||+.+
T Consensus 365 ~~FCkna~~l~~i~~~~~~~~~~~~~gg~~aqE~iK~~t~q~vp~~n~~i~dg~~~ 420 (425)
T cd01493 365 KLFCKNAAFLRVIRGRSLEHNISAFMGGIAAQEVIKLITKQYVPIDNTFIFDGIRS 420 (425)
T ss_pred HHHHhhHHhhhcccCCcccchHHHHHhHHHHHHHHHHHhccccccCCceEEecccc
Confidence 9999876 22239999999999999999999999999999999999865
No 60
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=98.31 E-value=2.3e-07 Score=78.19 Aligned_cols=50 Identities=38% Similarity=0.703 Sum_probs=36.9
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHcCCCCCCCCCChhHHHHHhhhcCCCCCCCCCC
Q 003715 498 QFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKEN 552 (800)
Q Consensus 498 ~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 552 (800)
+||.+|++|++||.++|+|||++|||+ + .+...+.+++ +..+|.|.|+++
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~-~---~~~~~~~~i~-~~iIP~~~~t~~ 50 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIP-P---LDREEIKKIA-GNIIPAFAPTNA 50 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT-------S-HHHHHHHH-TTEE-B-HHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCC-c---ccHHHHHHHh-cCcCCCcCCchh
Confidence 599999999999999999999999999 4 5678888888 888999988654
No 61
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=97.81 E-value=2.1e-05 Score=69.10 Aligned_cols=55 Identities=24% Similarity=0.300 Sum_probs=46.2
Q ss_pred EEeCCCCcHHHHHHHHHHc---CCceeeeecCCceeeccCCc----chhhcccCcHHHHHHh
Q 003715 709 WILRDNPTLRQLLQWLQDK---GLNAYSISYGSCLLFNSMFP----RHKERMDKKVVDLVRD 763 (800)
Q Consensus 709 ~~v~~~~TL~~li~~~~~~---~l~~~~i~~g~~~lY~~~~~----~~~~~l~~~l~~l~~~ 763 (800)
++++.++||++||+.+.++ .+.-++|+.+++.||+...| .++.||+++|.||+..
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL~~~ 62 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKELLSD 62 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTTHHS
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHHhcC
Confidence 4677899999999999988 77889999999999999876 4689999999999764
No 62
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=97.63 E-value=0.00013 Score=82.80 Aligned_cols=32 Identities=34% Similarity=0.732 Sum_probs=29.3
Q ss_pred CCCccccccCCCCchhHHHHHHhhhhhhhcCCCC
Q 003715 595 MNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPE 628 (800)
Q Consensus 595 ~~p~~FeKDDd~n~hidFV~AasNLRA~ny~I~~ 628 (800)
..|++|+.+|+. |++||.|+|||||++|+|+.
T Consensus 245 P~p~~fd~~~~~--h~~fv~~~a~l~a~~~~~~~ 276 (435)
T cd01490 245 PTPLEFDVNNPL--HLDFVLAAANLYAEVYGIPG 276 (435)
T ss_pred CCCCCCCCCCHH--HHHHHHHHHHHHHHhcCCCc
Confidence 468999999886 99999999999999999986
No 63
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=97.36 E-value=0.00018 Score=73.55 Aligned_cols=94 Identities=23% Similarity=0.281 Sum_probs=68.3
Q ss_pred CHHHHHHHHcCcEEEEcCCchHHH-HHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHH
Q 003715 203 GSKLQKKLEEAKVFVVGSGALGCE-FLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAA 281 (800)
Q Consensus 203 G~~~q~~L~~~~VlIvG~GgiG~e-vlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~ 281 (800)
+...+++|++.+|.|+|.|+.|++ ++..|+.+|+ |.+. ++
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv-----~~~~------------------~~---------------- 136 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGI-----RIAP------------------SE---------------- 136 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCC-----CccC------------------CC----------------
Confidence 466789999999999999999999 9999999999 4433 00
Q ss_pred HHCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHH-HHhhhcccccccEEEecccCcccce-EEEeCCcc
Q 003715 282 LINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARL-YIDQRCLYFQKPLLESGTLGAKCNT-QMVIPHLT 359 (800)
Q Consensus 282 ~~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~-~v~~~c~~~~~pli~sg~~G~~G~v-~~iip~~t 359 (800)
+ ..++|+. -|....++ .+|+.....+.|++-....|..+-+ .++.|+.|
T Consensus 137 ---a-------------------------~l~vVl~-~Dyl~p~L~~~n~~~l~~~~~~l~v~~~~~~~~~gp~~~p~~~ 187 (193)
T TIGR03882 137 ---A-------------------------DLTVVLT-DDYLDPELAAINQRALAAGRPWLLVKPGGVQPWIGPLFKPGKT 187 (193)
T ss_pred ---C-------------------------CEEEEEe-CCCCChHHHHHHHHHHHcCCceEEEEeCCceEEECCeecCCCC
Confidence 0 1222222 23334443 5677777888888887777777665 56789999
Q ss_pred cccCC
Q 003715 360 ENYGA 364 (800)
Q Consensus 360 ~~y~~ 364 (800)
.|+.|
T Consensus 188 ~c~~c 192 (193)
T TIGR03882 188 GCWHC 192 (193)
T ss_pred ccccc
Confidence 99998
No 64
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.28 E-value=0.00067 Score=75.95 Aligned_cols=100 Identities=24% Similarity=0.365 Sum_probs=69.5
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHH-CCCCeEEE
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALI-NPHLNTEA 291 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~-np~v~i~~ 291 (800)
.+|+|+|||++|+.++.+|++.|. ++|++.|.. ..| ++++... -+ ++++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d-----~~V~iAdRs-------------------~~~----~~~i~~~~~~--~v~~ 51 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD-----GEVTIADRS-------------------KEK----CARIAELIGG--KVEA 51 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC-----ceEEEEeCC-------------------HHH----HHHHHhhccc--ccee
Confidence 589999999999999999999998 899998721 112 2222222 22 4555
Q ss_pred eeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccC
Q 003715 292 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLG 346 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G 346 (800)
..-.+.... .+ .+.++++|+||+|+.....+ .+-+.|.+.++++++.....
T Consensus 52 ~~vD~~d~~-al--~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 52 LQVDAADVD-AL--VALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred EEecccChH-HH--HHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccCC
Confidence 554443221 11 25678889999999887777 55568999999999865443
No 65
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.15 E-value=0.0011 Score=71.93 Aligned_cols=76 Identities=24% Similarity=0.259 Sum_probs=58.3
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeE
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 289 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i 289 (800)
++.++|+|+|+||.|..++..|+..|+ ++|+|+|.+ ..|++.+++.+...++.+.+
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~-----~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~ 180 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGV-----ERLTIFDVD-------------------PARAAALADELNARFPAARA 180 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEE
Confidence 566799999999999999999999999 899999754 25888888888877776544
Q ss_pred EEeeccCCcchhcccchhhccCCCEEEEcc
Q 003715 290 EALQIRANPETENVFNDTFWENLNVVVNAL 319 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~ 319 (800)
..... + .+.+..+|+||+|+
T Consensus 181 ~~~~~--------~--~~~~~~aDiVInaT 200 (284)
T PRK12549 181 TAGSD--------L--AAALAAADGLVHAT 200 (284)
T ss_pred Eeccc--------h--HhhhCCCCEEEECC
Confidence 33211 0 11246789999996
No 66
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=97.09 E-value=0.0015 Score=63.42 Aligned_cols=125 Identities=17% Similarity=0.170 Sum_probs=92.3
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEe
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 292 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~ 292 (800)
..|.++|||-+|--++-+|... ..|+.-+|.++|...|+..++-.--+- ..+|.+|++-+++ +.+-.+.-.+++.
T Consensus 19 GeV~l~G~GRLG~Rval~Lle~--HRGGperi~v~Dgqrve~dDiihrr~G--a~~GEyKv~Fi~r-l~~~~f~r~V~a~ 93 (217)
T COG4015 19 GEVSLIGCGRLGVRVALDLLEV--HRGGPERIYVFDGQRVEEDDIIHRRLG--AKVGEYKVDFIKR-LGRVHFGRRVEAF 93 (217)
T ss_pred ceEEEEeccchhHHHHHHHHHH--hcCCCeEEEEecCcccCchhhHHHHhC--CCcchhHHHHHHH-hCcCCCCceeecc
Confidence 4599999999999999887654 334448999999999999997332222 3689999987654 4445566789999
Q ss_pred eccCCcchhcccchhhccCCCEEEEc---cCCHHHHHHHhhhcccccccEEEecccCcccc
Q 003715 293 QIRANPETENVFNDTFWENLNVVVNA---LDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 350 (800)
Q Consensus 293 ~~~v~~~~~~~~~~~f~~~~dvVi~a---~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~ 350 (800)
++.++.++.+++ .+ |+|+-| -|....-..+.+.|+..+..-| +|.|..|.
T Consensus 94 pE~it~dNlhll-----~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~Ti--sT~GVFGi 146 (217)
T COG4015 94 PENITKDNLHLL-----KG-DVVVICIAGGDTIPVTAAIINYAKERGIKTI--STNGVFGI 146 (217)
T ss_pred cccccccchhhh-----cC-CEEEEEecCCCcchhHHHHHHHHHHcCceEe--ecCceeec
Confidence 999998876654 33 777554 4677777788889999998766 34555554
No 67
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.02 E-value=0.0013 Score=63.21 Aligned_cols=78 Identities=24% Similarity=0.422 Sum_probs=55.4
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCe
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 288 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~ 288 (800)
.|++++|+|+|+||.|..+++.|+..|+ .+|+|++ |. ..|++.+++.+ +...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~-----~~i~i~n----------Rt---------~~ra~~l~~~~----~~~~ 60 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGA-----KEITIVN----------RT---------PERAEALAEEF----GGVN 60 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTS-----SEEEEEE----------SS---------HHHHHHHHHHH----TGCS
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCC-----CEEEEEE----------CC---------HHHHHHHHHHc----Cccc
Confidence 6889999999999999999999999999 8899974 32 24666666555 3334
Q ss_pred EEEeeccCCcchhcccchhhccCCCEEEEccCCH
Q 003715 289 TEALQIRANPETENVFNDTFWENLNVVVNALDNV 322 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~ 322 (800)
+....- +++ ...+.++|+||+|+...
T Consensus 61 ~~~~~~------~~~--~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 61 IEAIPL------EDL--EEALQEADIVINATPSG 86 (135)
T ss_dssp EEEEEG------GGH--CHHHHTESEEEE-SSTT
T ss_pred cceeeH------HHH--HHHHhhCCeEEEecCCC
Confidence 444332 011 13467899999998654
No 68
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.95 E-value=0.0037 Score=64.42 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=62.8
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCe
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 288 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~ 288 (800)
.|++++|+|||.|.+|...++.|...|. +|++++.+. .+ .+.++.+.-.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga------~V~VIs~~~------~~-------------------~l~~l~~~~~ 55 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGA------HIVVISPEL------TE-------------------NLVKLVEEGK 55 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC------eEEEEcCCC------CH-------------------HHHHHHhCCC
Confidence 4788999999999999999999999996 899986421 00 1111111112
Q ss_pred EEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccE
Q 003715 289 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPL 339 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pl 339 (800)
+...... +....+.++|+||.|+++.+.-..+...| ..++++
T Consensus 56 i~~~~~~--------~~~~~l~~adlViaaT~d~elN~~i~~~a-~~~~lv 97 (202)
T PRK06718 56 IRWKQKE--------FEPSDIVDAFLVIAATNDPRVNEQVKEDL-PENALF 97 (202)
T ss_pred EEEEecC--------CChhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCcE
Confidence 3332221 22344678999999999999999999899 446644
No 69
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.58 E-value=0.0076 Score=62.25 Aligned_cols=95 Identities=18% Similarity=0.137 Sum_probs=69.5
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeE
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 289 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i 289 (800)
|++.+|+|||.|.+|..-++.|...|. ++++++.+.- ..+. .+.+. -++
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga------~VtVvsp~~~---------------------~~l~-~l~~~---~~i 55 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA------QLRVIAEELE---------------------SELT-LLAEQ---GGI 55 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC------EEEEEcCCCC---------------------HHHH-HHHHc---CCE
Confidence 678899999999999999999999996 8999986421 0011 11111 145
Q ss_pred EEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEec
Q 003715 290 EALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG 343 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg 343 (800)
+.+...+. ...+.++++||.|+|+.+....+-..|...++|+-.++
T Consensus 56 ~~~~~~~~--------~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d 101 (205)
T TIGR01470 56 TWLARCFD--------ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVD 101 (205)
T ss_pred EEEeCCCC--------HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 55544332 23457899999999999888899999999999875444
No 70
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.52 E-value=0.012 Score=58.19 Aligned_cols=85 Identities=15% Similarity=0.257 Sum_probs=61.1
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCe
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 288 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~ 288 (800)
.|++.+|+|||.|.+|...++.|...|. ++++++.+..+. +.++ +.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga------~V~VIsp~~~~~-------------------------l~~l-~~-- 55 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA------FVTVVSPEICKE-------------------------MKEL-PY-- 55 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCccCHH-------------------------HHhc-cC--
Confidence 5788999999999999999999999997 899987553111 1111 11
Q ss_pred EEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccc
Q 003715 289 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF 335 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~ 335 (800)
++..... +....+.++|+||.|+|+.+....+...|..+
T Consensus 56 i~~~~~~--------~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 56 ITWKQKT--------FSNDDIKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred cEEEecc--------cChhcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 2222222 22344678999999999999988888888764
No 71
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.48 E-value=0.0033 Score=57.55 Aligned_cols=88 Identities=18% Similarity=0.174 Sum_probs=62.3
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCe
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 288 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~ 288 (800)
.|++.+|+|||.|.+|..-++.|..+|. +++++..+. +... ..++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA------~v~vis~~~-~~~~----------------------------~~i~ 48 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGA------KVTVISPEI-EFSE----------------------------GLIQ 48 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTB------EEEEEESSE-HHHH----------------------------TSCE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECCch-hhhh----------------------------hHHH
Confidence 4788999999999999999999999996 999987664 0000 1222
Q ss_pred EEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEe
Q 003715 289 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLES 342 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~s 342 (800)
.....+ . ..+.++++|+.|+|+.+....+-+.|+.+++|+-.+
T Consensus 49 --~~~~~~--------~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 49 --LIRREF--------E-EDLDGADLVFAATDDPELNEAIYADARARGILVNVV 91 (103)
T ss_dssp --EEESS---------G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEET
T ss_pred --HHhhhH--------H-HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEEC
Confidence 222222 1 235789999999999999999999999999976643
No 72
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.00 E-value=0.024 Score=59.23 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=69.4
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCe
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 288 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~ 288 (800)
.+++.+|+|||.|.+|..=++.|...|. +|+|+-++.- ..+..+-..-+
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA------~VtVVap~i~-------------------------~el~~l~~~~~ 70 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC------YVYILSKKFS-------------------------KEFLDLKKYGN 70 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCCCC-------------------------HHHHHHHhCCC
Confidence 4668899999999999999999999996 8999865521 00111110113
Q ss_pred EEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEec
Q 003715 289 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG 343 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg 343 (800)
++.....+. ...+.++++||.|+|+.+.-..+...|...++++..+.
T Consensus 71 i~~~~r~~~--------~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd 117 (223)
T PRK05562 71 LKLIKGNYD--------KEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCS 117 (223)
T ss_pred EEEEeCCCC--------hHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcC
Confidence 455544332 34467899999999999999999999999988776544
No 73
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.83 E-value=0.015 Score=65.66 Aligned_cols=97 Identities=20% Similarity=0.292 Sum_probs=62.7
Q ss_pred EEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEeec
Q 003715 215 VFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQI 294 (800)
Q Consensus 215 VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~~ 294 (800)
|+|+|+|.+|+.+++.|+..+-. .++++.|.+ ..|++.+++.+ ...++....-
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~----~~v~va~r~-------------------~~~~~~~~~~~----~~~~~~~~~~ 53 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPF----EEVTVADRN-------------------PEKAERLAEKL----LGDRVEAVQV 53 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-----EEEEEESS-------------------HHHHHHHHT------TTTTEEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCC----CcEEEEECC-------------------HHHHHHHHhhc----cccceeEEEE
Confidence 78999999999999999998841 388888632 23333333322 2345666665
Q ss_pred cCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEe
Q 003715 295 RANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLES 342 (800)
Q Consensus 295 ~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~s 342 (800)
.+..... + .++++++|+||+|+-.. .-..+-+.|..+++++++.
T Consensus 54 d~~~~~~-l--~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 54 DVNDPES-L--AELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp -TTTHHH-H--HHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred ecCCHHH-H--HHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 5553322 2 35789999999999776 5557888999999999993
No 74
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.60 E-value=0.027 Score=61.23 Aligned_cols=167 Identities=17% Similarity=0.139 Sum_probs=84.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCc---cccccccCccCccHHHHHHHHHHHHCCCCeE
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLS---RQFLFRDWNIGQAKSTVAASAAALINPHLNT 289 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLn---RQflf~~~dIG~~Ka~va~~~l~~~np~v~i 289 (800)
.+|.|||+|..|+.+|.+|++.|. .+++.|.+.=.....- ++.+-+...-|......+...+.+ +
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~------l 73 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV------DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALAR------L 73 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC------EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhC------e
Confidence 489999999999999999999998 8999885422111100 000000001122111111111111 1
Q ss_pred EEeeccCCcchhcccchhhccCCCEEEEcc-CCHHHHHHH----hhhcccccccEEEecccCccc-ceEEEeCCcccccC
Q 003715 290 EALQIRANPETENVFNDTFWENLNVVVNAL-DNVNARLYI----DQRCLYFQKPLLESGTLGAKC-NTQMVIPHLTENYG 363 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~-Dn~~ar~~v----~~~c~~~~~pli~sg~~G~~G-~v~~iip~~t~~y~ 363 (800)
+.. + + + +-++++|+||.|+ ++.+.+..+ ...|-..+. ++.+.|.+.-- .......+...+.+
T Consensus 74 ~~~-------~-~-~--~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~-il~snTS~~~~~~la~~~~~~~r~~g 141 (286)
T PRK07819 74 RFT-------T-D-L--GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA-VLASNTSSIPIMKLAAATKRPGRVLG 141 (286)
T ss_pred Eee-------C-C-H--HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc-EEEECCCCCCHHHHHhhcCCCccEEE
Confidence 111 0 1 1 2257999999886 455666544 333312233 33344333211 11111111111222
Q ss_pred CC-CCCCCCCCCCccccCCCCCcchhHHHHHhhhhhhhccCh
Q 003715 364 AS-RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP 404 (800)
Q Consensus 364 ~~-~~p~~~~~p~ctl~~fP~~~~h~i~wa~~~F~~~F~~~~ 404 (800)
.+ -+|+ .-.|..++..-+.+...++++++.++....+..|
T Consensus 142 ~hf~~P~-~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~p 182 (286)
T PRK07819 142 LHFFNPV-PVLPLVELVPTLVTSEATVARAEEFASDVLGKQV 182 (286)
T ss_pred EecCCCc-ccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCc
Confidence 21 1222 2356678888888999999999998776555544
No 75
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.35 E-value=0.034 Score=60.37 Aligned_cols=78 Identities=23% Similarity=0.250 Sum_probs=52.6
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeE
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 289 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i 289 (800)
+.+++|+|+|+||.|..++-.|+..|+ .+|+|+|.+ ..|++.+++.+....+...+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~-----~~i~i~nR~-------------------~~ka~~La~~~~~~~~~~~~ 180 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGV-----QKLQVADLD-------------------TSRAQALADVINNAVGREAV 180 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCC-----CEEEEEcCC-------------------HHHHHHHHHHHhhccCcceE
Confidence 456789999999999999999999999 899998632 23777777776544333222
Q ss_pred EEeeccCCcchhcccchhhccCCCEEEEcc
Q 003715 290 EALQIRANPETENVFNDTFWENLNVVVNAL 319 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~ 319 (800)
.... .. . . ......+|+||||+
T Consensus 181 ~~~~--~~----~-~-~~~~~~~divINaT 202 (283)
T PRK14027 181 VGVD--AR----G-I-EDVIAAADGVVNAT 202 (283)
T ss_pred EecC--Hh----H-H-HHHHhhcCEEEEcC
Confidence 2211 00 0 0 11235789999986
No 76
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.14 E-value=0.035 Score=60.22 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=31.4
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+++++|+|+|+||.|..++..|+..|+ .+|+|++
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~-----~~i~I~n 156 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGV-----TDITVIN 156 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCC-----CeEEEEe
Confidence 567899999999999999999999999 8999974
No 77
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.10 E-value=0.014 Score=59.89 Aligned_cols=37 Identities=46% Similarity=0.761 Sum_probs=35.2
Q ss_pred cchhHHHhhhhHHHHHHHhhcCccccccccccccccc
Q 003715 140 LNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVE 176 (800)
Q Consensus 140 l~Pv~AiiGGivaQEVIKait~k~~Pi~q~~~~d~~~ 176 (800)
+.|+++++|++.+||++|.++|+..|+.+++.||..+
T Consensus 155 ~~p~~~~~~~~~~~e~~k~~~~~~~~l~~~~~~d~~~ 191 (197)
T cd01492 155 LAPVAAVVGGILAQDVINALSKRESPLNNFFVFDGET 191 (197)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECCC
Confidence 9999999999999999999999999999999999854
No 78
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.06 E-value=0.054 Score=58.98 Aligned_cols=84 Identities=20% Similarity=0.190 Sum_probs=53.0
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeE
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 289 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i 289 (800)
+.+++++|+|+||+|..++..|+..|+ .+|+|++.+. -...|++.+++.+....+.+.+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~-----~~V~I~~R~~----------------~~~~~a~~l~~~l~~~~~~~~~ 182 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGA-----KEITIFNIKD----------------DFYERAEQTAEKIKQEVPECIV 182 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCCc----------------hHHHHHHHHHHHHhhcCCCcee
Confidence 567789999999999999999999999 7799976310 0113566666666555554444
Q ss_pred EEeeccCCcchhcccchhhccCCCEEEEcc
Q 003715 290 EALQIRANPETENVFNDTFWENLNVVVNAL 319 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~ 319 (800)
.... +.. .+.+ ...+..+|+||||+
T Consensus 183 ~~~d--~~~-~~~~--~~~~~~~DilINaT 207 (289)
T PRK12548 183 NVYD--LND-TEKL--KAEIASSDILVNAT 207 (289)
T ss_pred EEec--hhh-hhHH--HhhhccCCEEEEeC
Confidence 3222 211 1111 12345678888875
No 79
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.58 E-value=0.073 Score=57.57 Aligned_cols=35 Identities=23% Similarity=0.513 Sum_probs=31.7
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
.+.+++|+|+|+||+|..+++.|+..|+ .+|++++
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~-----~~V~v~~ 154 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGV-----AEITIVN 154 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCC-----CEEEEEe
Confidence 3677899999999999999999999998 7899985
No 80
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.49 E-value=0.12 Score=57.14 Aligned_cols=166 Identities=14% Similarity=0.102 Sum_probs=87.3
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEe
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 292 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~ 292 (800)
++|.|||+|-+|+.++..|+..|. .+++.|.+.=....+ ......+.+.+.+..+. ....
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~------~V~l~D~~~~~~~~~------------~~~i~~~~~~~~~~~~~--~~~~ 67 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL------DVVAWDPAPGAEAAL------------RANVANAWPALERQGLA--PGAS 67 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCCHHHHHHH------------HHHHHHHHHHHHHcCCC--hhhH
Confidence 479999999999999999999998 899998543111100 01111111111111110 0000
Q ss_pred eccCCcchhcccchhhccCCCEEEEccC-CHHHHHHH----hhhcccccccEEEecccCcccc-eEEEeCCcccccCCCC
Q 003715 293 QIRANPETENVFNDTFWENLNVVVNALD-NVNARLYI----DQRCLYFQKPLLESGTLGAKCN-TQMVIPHLTENYGASR 366 (800)
Q Consensus 293 ~~~v~~~~~~~~~~~f~~~~dvVi~a~D-n~~ar~~v----~~~c~~~~~pli~sg~~G~~G~-v~~iip~~t~~y~~~~ 366 (800)
..++...+ + + .+-+.++|+|+.|+- +.+.+..+ .+.|.. + .+|.+.|.+..-. ..-...+-..+...+.
T Consensus 68 ~~~i~~~~-~-l-~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~-~-aIlaSnTS~l~~s~la~~~~~p~R~~g~Hf 142 (321)
T PRK07066 68 PARLRFVA-T-I-EACVADADFIQESAPEREALKLELHERISRAAKP-D-AIIASSTSGLLPTDFYARATHPERCVVGHP 142 (321)
T ss_pred HhhceecC-C-H-HHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCC-C-eEEEECCCccCHHHHHHhcCCcccEEEEec
Confidence 11111111 1 1 134689999998864 55556533 333322 2 2788877765321 1111111111222221
Q ss_pred CCCCCCCCCccccCCCCCcchhHHHHHhhhhhhhccCh
Q 003715 367 DPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP 404 (800)
Q Consensus 367 ~p~~~~~p~ctl~~fP~~~~h~i~wa~~~F~~~F~~~~ 404 (800)
--|.--.|.-.+-.-|.+-.-+++++++++.. .+..|
T Consensus 143 fnP~~~~pLVEVv~g~~T~~e~~~~~~~f~~~-lGk~p 179 (321)
T PRK07066 143 FNPVYLLPLVEVLGGERTAPEAVDAAMGIYRA-LGMRP 179 (321)
T ss_pred CCccccCceEEEeCCCCCCHHHHHHHHHHHHH-cCCEe
Confidence 11223457777777788888899999998776 44433
No 81
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.49 E-value=0.043 Score=62.13 Aligned_cols=76 Identities=28% Similarity=0.389 Sum_probs=56.7
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCe
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 288 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~ 288 (800)
.|.+++|+|||+|-+|.-++++|+..|+ ..|+|+ ||+. .||.-+|+.+. ..
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~-----~~i~Ia----------NRT~---------erA~~La~~~~-----~~ 225 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGV-----KKITIA----------NRTL---------ERAEELAKKLG-----AE 225 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCC-----CEEEEE----------cCCH---------HHHHHHHHHhC-----Ce
Confidence 3888999999999999999999999999 899995 6653 46666666554 22
Q ss_pred EEEeeccCCcchhcccchhhccCCCEEEEccCCHH
Q 003715 289 TEALQIRANPETENVFNDTFWENLNVVVNALDNVN 323 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ 323 (800)
+..+.+ + .+++..+|+||.|+..+.
T Consensus 226 ~~~l~e--------l--~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 226 AVALEE--------L--LEALAEADVVISSTSAPH 250 (414)
T ss_pred eecHHH--------H--HHhhhhCCEEEEecCCCc
Confidence 222221 1 356789999999986654
No 82
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=94.46 E-value=0.02 Score=50.92 Aligned_cols=49 Identities=27% Similarity=0.415 Sum_probs=37.2
Q ss_pred CCCcHHHHHHHH-HHc-CCceeeeecCCceeeccCCcchhhcccCcHHHHH
Q 003715 713 DNPTLRQLLQWL-QDK-GLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLV 761 (800)
Q Consensus 713 ~~~TL~~li~~~-~~~-~l~~~~i~~g~~~lY~~~~~~~~~~l~~~l~~l~ 761 (800)
..+||++|++.+ +++ |+..+.++.|..+||++......++++++|++|.
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elg 57 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELG 57 (87)
T ss_dssp TT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT
T ss_pred hhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcC
Confidence 479999999986 555 9999999999999999765455899999999993
No 83
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=94.41 E-value=0.027 Score=49.67 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=29.7
Q ss_pred ccccchhHHHhhhhHHHHHHHhhcCcccccc-ccccccccc
Q 003715 137 RAVLNPMAAMFGGIVGQEVVKACSGKFHPLL-QFFYFDSVE 176 (800)
Q Consensus 137 ~~el~Pv~AiiGGivaQEVIKait~k~~Pi~-q~~~~d~~~ 176 (800)
.|-+.|+++++|.+.|+|+||.|+|...|+. .+++||+.+
T Consensus 23 ~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~ 63 (84)
T PF05237_consen 23 AGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLN 63 (84)
T ss_dssp S-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTT
T ss_pred cccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCC
Confidence 3789999999999999999999999877765 566789854
No 84
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.36 E-value=0.083 Score=57.50 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=40.4
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHH
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAAL 282 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~ 282 (800)
+++++++|+|+||.+..++-.|+..|+ .+|+|++ |. .-...|++.+++.+..
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~-----~~i~i~n----------Rt------~~~~~ka~~la~~~~~ 173 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGL-----KEIKLFN----------RR------DEFFDKALAFAQRVNE 173 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEe----------CC------ccHHHHHHHHHHHhhh
Confidence 567799999999999999999999999 8999975 21 0023577777776654
No 85
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.25 E-value=0.064 Score=61.32 Aligned_cols=76 Identities=13% Similarity=0.348 Sum_probs=52.2
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCe
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 288 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~ 288 (800)
.+.+++|+|||+|+.|..++++|+..|+ .+|+|+. |. ..|++.+++.+ +...
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~-----~~I~V~n----------Rt---------~~ra~~La~~~----~~~~ 229 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAP-----KQIMLAN----------RT---------IEKAQKITSAF----RNAS 229 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCC-----CEEEEEC----------CC---------HHHHHHHHHHh----cCCe
Confidence 4678999999999999999999999999 7899963 32 23555555443 1122
Q ss_pred EEEeeccCCcchhcccchhhccCCCEEEEccCCH
Q 003715 289 TEALQIRANPETENVFNDTFWENLNVVVNALDNV 322 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~ 322 (800)
+..+. .+ .+.+.++|+||+|+-.+
T Consensus 230 ~~~~~--------~l--~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 230 AHYLS--------EL--PQLIKKADIIIAAVNVL 253 (414)
T ss_pred EecHH--------HH--HHHhccCCEEEECcCCC
Confidence 21111 11 24567899999998653
No 86
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.18 E-value=0.031 Score=57.40 Aligned_cols=36 Identities=50% Similarity=0.943 Sum_probs=34.0
Q ss_pred hhHHHhhhhHHHHHHHhhcCcccccccccccccccc
Q 003715 142 PMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVES 177 (800)
Q Consensus 142 Pv~AiiGGivaQEVIKait~k~~Pi~q~~~~d~~~~ 177 (800)
|+++++|++.++|+||.++|+..|++++++||+.+.
T Consensus 158 p~~~~~~~~~~~e~~k~l~~~~~~~~~~~~~d~~~~ 193 (198)
T cd01485 158 PIAAFLGGVVAQEAIKSISGKFTPLNNLYIYDGFES 193 (198)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECccc
Confidence 999999999999999999999999999999998654
No 87
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.10 E-value=0.097 Score=60.33 Aligned_cols=36 Identities=39% Similarity=0.597 Sum_probs=32.2
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
+++++|+|+|+|++|.++++.|+..|. .++++|.+.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~------~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA------KVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeCCc
Confidence 567899999999999999999999998 899988653
No 88
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.08 E-value=0.19 Score=52.63 Aligned_cols=98 Identities=21% Similarity=0.285 Sum_probs=63.3
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEe
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 292 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~ 292 (800)
++++|+|||-+|..+|+.|+..|- .++++|.|. +.+.+.+.. .....++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~------~Vv~Id~d~----------------------~~~~~~~~~---~~~~~~v 49 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH------NVVLIDRDE----------------------ERVEEFLAD---ELDTHVV 49 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC------ceEEEEcCH----------------------HHHHHHhhh---hcceEEE
Confidence 479999999999999999999996 888888553 111111111 1234444
Q ss_pred eccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhccc-ccccEEEec
Q 003715 293 QIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLY-FQKPLLESG 343 (800)
Q Consensus 293 ~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~-~~~pli~sg 343 (800)
...-+. ...+...-...+|+++.++++-..-..+...+.+ +++|-+.+-
T Consensus 50 ~gd~t~--~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar 99 (225)
T COG0569 50 IGDATD--EDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIAR 99 (225)
T ss_pred EecCCC--HHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 433322 1222233467899999999987777666655544 678776544
No 89
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.06 E-value=0.052 Score=46.95 Aligned_cols=30 Identities=33% Similarity=0.656 Sum_probs=27.4
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
||+|||+|.+|+|+|..|+..|. ++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~------~vtli~~ 30 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK------EVTLIER 30 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS------EEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHhCc------EEEEEec
Confidence 68999999999999999999997 8888764
No 90
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.05 E-value=0.046 Score=55.30 Aligned_cols=161 Identities=19% Similarity=0.244 Sum_probs=76.7
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCcccc---ccccCccCccHHHHHHHHHHHHCCCCeEE
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQF---LFRDWNIGQAKSTVAASAAALINPHLNTE 290 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQf---lf~~~dIG~~Ka~va~~~l~~~np~v~i~ 290 (800)
+|.|||+|.+|..++-.+++.|. .++++|.+.-.....-+.+ +-...+-|....+.+...+.++ .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~------~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i------~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY------EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARI------S 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS------EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTE------E
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC------cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhc------c
Confidence 68999999999999999999998 9999996543221111100 0000011222222222222222 1
Q ss_pred EeeccCCcchhcccchhhccCCCEEEEcc-CCHHHHH----HHhhhcccccccEEEecccCcccc-eEEEeCCcccccCC
Q 003715 291 ALQIRANPETENVFNDTFWENLNVVVNAL-DNVNARL----YIDQRCLYFQKPLLESGTLGAKCN-TQMVIPHLTENYGA 364 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~-Dn~~ar~----~v~~~c~~~~~pli~sg~~G~~G~-v~~iip~~t~~y~~ 364 (800)
.. .. + .+. .++|+||.|+ .+.+.++ .+++.|.. + .+|.+.+.++.=. ....+++-..+.+.
T Consensus 69 ~~-~d--------l-~~~-~~adlViEai~E~l~~K~~~~~~l~~~~~~-~-~ilasnTSsl~i~~la~~~~~p~R~ig~ 135 (180)
T PF02737_consen 69 FT-TD--------L-EEA-VDADLVIEAIPEDLELKQELFAELDEICPP-D-TILASNTSSLSISELAAALSRPERFIGM 135 (180)
T ss_dssp EE-SS--------G-GGG-CTESEEEE-S-SSHHHHHHHHHHHHCCS-T-T-SEEEE--SSS-HHHHHTTSSTGGGEEEE
T ss_pred cc-cC--------H-HHH-hhhheehhhccccHHHHHHHHHHHHHHhCC-C-ceEEecCCCCCHHHHHhccCcCceEEEE
Confidence 11 11 1 122 3899999997 4555555 34444422 2 2454444443210 00001111111122
Q ss_pred CCCCCCCCCCCccccCCCCCcchhHHHHHhhhhhh
Q 003715 365 SRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGL 399 (800)
Q Consensus 365 ~~~p~~~~~p~ctl~~fP~~~~h~i~wa~~~F~~~ 399 (800)
+.--|....|...+-.-|.+..-++++++++++.+
T Consensus 136 Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~ 170 (180)
T PF02737_consen 136 HFFNPPHLMPLVEVVPGPKTSPETVDRVRALLRSL 170 (180)
T ss_dssp EE-SSTTT--EEEEEE-TTS-HHHHHHHHHHHHHT
T ss_pred ecccccccCceEEEeCCCCCCHHHHHHHHHHHHHC
Confidence 11112235688888888999999999999987664
No 91
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.03 E-value=0.12 Score=56.06 Aligned_cols=74 Identities=20% Similarity=0.296 Sum_probs=52.8
Q ss_pred HcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEE
Q 003715 211 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 290 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~ 290 (800)
.+++|+|+|+||.+-.++..|+..|+ .+|+|++ | -..|++.+++...+..+.+...
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~-----~~i~V~N----------R---------t~~ra~~La~~~~~~~~~~~~~ 180 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGA-----KRITVVN----------R---------TRERAEELADLFGELGAAVEAA 180 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEEe----------C---------CHHHHHHHHHHhhhcccccccc
Confidence 46889999999999999999999999 7999973 3 2467777888777776522221
Q ss_pred EeeccCCcchhcccchhhccCCCEEEEcc
Q 003715 291 ALQIRANPETENVFNDTFWENLNVVVNAL 319 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~ 319 (800)
.... .+ -...+|+||||+
T Consensus 181 ~~~~-----~~------~~~~~dliINaT 198 (283)
T COG0169 181 ALAD-----LE------GLEEADLLINAT 198 (283)
T ss_pred cccc-----cc------cccccCEEEECC
Confidence 1110 00 011689999996
No 92
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.01 E-value=0.1 Score=54.14 Aligned_cols=96 Identities=18% Similarity=0.183 Sum_probs=67.7
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCe
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 288 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~ 288 (800)
.|.+++|+|||.|.+|..=++.|+.+|. +++++-.+. + +. +...+ +.+ +
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga------~v~Vvs~~~-~-----------------~e---l~~~~-~~~---~ 57 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA------DVTVVSPEF-E-----------------PE---LKALI-EEG---K 57 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC------EEEEEcCCc-c-----------------HH---HHHHH-Hhc---C
Confidence 4678899999999999999999999996 888875443 0 01 11111 111 1
Q ss_pred EEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEec
Q 003715 289 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG 343 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg 343 (800)
+...... |+.+.+..+++||-|+|+.+.-..+-+.|..+++|+-.+.
T Consensus 58 i~~~~~~--------~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D 104 (210)
T COG1648 58 IKWIERE--------FDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVD 104 (210)
T ss_pred cchhhcc--------cChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccC
Confidence 2222222 2334456699999999999999999999999999776444
No 93
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.96 E-value=0.2 Score=54.17 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=28.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.+|.|||+|-+|+.++..|+..|. .++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC------ceEEEeCC
Confidence 479999999999999999999997 78888854
No 94
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.91 E-value=0.1 Score=50.60 Aligned_cols=35 Identities=29% Similarity=0.490 Sum_probs=30.1
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+.+++|+|+|+|++|..+++.|+..|. ..++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~-----~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGA-----AKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEcC
Confidence 457899999999999999999999875 57888763
No 95
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.89 E-value=0.034 Score=55.97 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=32.8
Q ss_pred HHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcc
Q 003715 208 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVI 252 (800)
Q Consensus 208 ~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~I 252 (800)
..|.+++|.|+|.|.||.++++-|...|+ +++.+|...-
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~~~~ 70 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM------RVIGYDRSPK 70 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT-------EEEEEESSCH
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc------eeEEecccCC
Confidence 47899999999999999999999999998 8888875543
No 96
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.75 E-value=0.083 Score=58.04 Aligned_cols=42 Identities=33% Similarity=0.617 Sum_probs=34.1
Q ss_pred cccCCCchhhHHHHHHHHHHHHHHcCCCCCCCCCChhHHHHHhhhc
Q 003715 497 LQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKV 542 (800)
Q Consensus 497 l~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~ 542 (800)
++||.+|+.|++||.++|+|||..|||+.. +....+.++.++
T Consensus 210 ~~fdkDd~~~~~~v~~~a~lRa~~f~I~~~----~~~~~k~i~g~I 251 (312)
T cd01489 210 LTFDKDDQDALDFVAAAANLRSHVFGIPMK----SRFDIKQMAGNI 251 (312)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHHHcCCCCC----CHHHHHHHhccc
Confidence 789999999999999999999999999864 344455555443
No 97
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=93.73 E-value=0.17 Score=47.97 Aligned_cols=99 Identities=23% Similarity=0.284 Sum_probs=56.7
Q ss_pred cEEEEcC-CchHHHHHHHHHH-hcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEE
Q 003715 214 KVFVVGS-GALGCEFLKNLAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 291 (800)
Q Consensus 214 ~VlIvG~-GgiG~evlknLal-~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~ 291 (800)
||.|+|+ |-.|.++++.+.. .|+ --.-.+|... |. +. ..|+|. +..+. ...+.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~-----~lv~~v~~~~---~~-----~~-g~d~g~---------~~~~~-~~~~~- 56 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGF-----ELVGAVDRKP---SA-----KV-GKDVGE---------LAGIG-PLGVP- 56 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTE-----EEEEEEETTT---ST-----TT-TSBCHH---------HCTSS-T-SSB-
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCc-----EEEEEEecCC---cc-----cc-cchhhh---------hhCcC-Ccccc-
Confidence 7999999 9999999999998 566 2223333221 00 01 124442 11111 01111
Q ss_pred eeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcc
Q 003715 292 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAK 348 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~ 348 (800)
+..+. ++.+..+|+||+.+ ++++-...-+.|.++++|++ .||.|+.
T Consensus 57 ----v~~~l-----~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~V-iGTTG~~ 102 (124)
T PF01113_consen 57 ----VTDDL-----EELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLV-IGTTGFS 102 (124)
T ss_dssp ----EBS-H-----HHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEE-EE-SSSH
T ss_pred ----cchhH-----HHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEE-EECCCCC
Confidence 11111 23455699999999 77777777888999999999 5777764
No 98
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=93.63 E-value=0.13 Score=53.48 Aligned_cols=84 Identities=24% Similarity=0.381 Sum_probs=59.5
Q ss_pred HHcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCe
Q 003715 210 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 288 (800)
Q Consensus 210 L~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~ 288 (800)
+.+++++++| |||||-++.|.|+.-|+ ..+.+.| +.| | ..+...++++||.++
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgi-----k~~~i~~--~~E--n-----------------~~a~akL~ai~p~~~ 56 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGI-----KVLVIDD--SEE--N-----------------PEAIAKLQAINPSVS 56 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCc-----hheeehh--hhh--C-----------------HHHHHHHhccCCCce
Confidence 4578888885 99999999999999999 4555543 111 1 235667899999999
Q ss_pred EEEeeccCCcch--hcccch--hhccCCCEEEEcc
Q 003715 289 TEALQIRANPET--ENVFND--TFWENLNVVVNAL 319 (800)
Q Consensus 289 i~~~~~~v~~~~--~~~~~~--~f~~~~dvVi~a~ 319 (800)
+..+.-.+.... +..|+. .-+...|++||..
T Consensus 57 v~F~~~DVt~~~~~~~~f~ki~~~fg~iDIlINgA 91 (261)
T KOG4169|consen 57 VIFIKCDVTNRGDLEAAFDKILATFGTIDILINGA 91 (261)
T ss_pred EEEEEeccccHHHHHHHHHHHHHHhCceEEEEccc
Confidence 999988887422 222321 2256889999864
No 99
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=93.44 E-value=0.17 Score=47.45 Aligned_cols=109 Identities=17% Similarity=0.144 Sum_probs=60.4
Q ss_pred cEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCc-cCccHHHHHHHHHHHHCCCCeEEE
Q 003715 214 KVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWN-IGQAKSTVAASAAALINPHLNTEA 291 (800)
Q Consensus 214 ~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~d-IG~~Ka~va~~~l~~~np~v~i~~ 291 (800)
||.||| .|-+|.++++.|+..-- -+++.+ +..+. .|+.=+.... .......+..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~-----~e~~~~---------------~~~~~~~g~~~~~~~~----~~~~~~~~~~ 56 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPD-----FELVAL---------------VSSSRSAGKPLSEVFP----HPKGFEDLSV 56 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST-----EEEEEE---------------EESTTTTTSBHHHTTG----GGTTTEEEBE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCC-----ccEEEe---------------eeeccccCCeeehhcc----ccccccceeE
Confidence 699999 79999999999988321 222221 22222 4543211111 0010111111
Q ss_pred eeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEec-ccCcccceEEEeCC
Q 003715 292 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG-TLGAKCNTQMVIPH 357 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg-~~G~~G~v~~iip~ 357 (800)
.. .+.+-+.+.|+|+.|+++..++.+.... ...++.+|+.+ ..-+...+..++|.
T Consensus 57 ~~----------~~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~~~R~~~~~~~~~pe 112 (121)
T PF01118_consen 57 ED----------ADPEELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLSGDFRLDDDVPYGLPE 112 (121)
T ss_dssp EE----------TSGHHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSSTTTTSTTSEEE-HH
T ss_pred ee----------cchhHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCHHHhCCCCCCEEeCC
Confidence 11 1223458999999999998887777765 77788888744 33344444455553
No 100
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=93.37 E-value=0.076 Score=41.19 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=19.4
Q ss_pred hhcccchhHHHHHHHHHHHHHH
Q 003715 442 KERCETFQDCITWARLRFEDYF 463 (800)
Q Consensus 442 ~~~~~~~~~c~~~A~~~f~~~F 463 (800)
...|.+.+.||+||+.+|+.+|
T Consensus 23 r~~P~~~~HcI~wAk~~f~~~F 44 (45)
T PF10585_consen 23 RNFPRTPEHCIEWAKDLFEELF 44 (45)
T ss_dssp HTS-SSHHHHHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHHHh
Confidence 4679999999999999999998
No 101
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.33 E-value=0.25 Score=47.96 Aligned_cols=75 Identities=20% Similarity=0.261 Sum_probs=51.5
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCC--eE
Q 003715 213 AKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL--NT 289 (800)
Q Consensus 213 ~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v--~i 289 (800)
.||.|||+ |.+|+.++-.|++.|++ .+|.|+| +...|++..+.-+....+.. ++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~----~ei~L~D-------------------~~~~~~~g~a~Dl~~~~~~~~~~~ 57 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLA----DEIVLID-------------------INEDKAEGEALDLSHASAPLPSPV 57 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTS----SEEEEEE-------------------SSHHHHHHHHHHHHHHHHGSTEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC----CceEEec-------------------cCcccceeeehhhhhhhhhccccc
Confidence 48999999 99999999999999995 5699986 33336666666666554332 23
Q ss_pred EEeeccCCcchhcccchhhccCCCEEEEccC
Q 003715 290 EALQIRANPETENVFNDTFWENLNVVVNALD 320 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~D 320 (800)
..... . .+-++++|+||.+..
T Consensus 58 ~i~~~-----~-----~~~~~~aDivvitag 78 (141)
T PF00056_consen 58 RITSG-----D-----YEALKDADIVVITAG 78 (141)
T ss_dssp EEEES-----S-----GGGGTTESEEEETTS
T ss_pred ccccc-----c-----ccccccccEEEEecc
Confidence 22221 1 123578999988754
No 102
>PRK04148 hypothetical protein; Provisional
Probab=93.32 E-value=0.33 Score=46.68 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=65.9
Q ss_pred HcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEE
Q 003715 211 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 290 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~ 290 (800)
++.+|++||+| -|..++..|+.+|. .++.+|.+. ..++.+ ++.. +.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~------~ViaIDi~~-------------------~aV~~a----~~~~----~~ 61 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF------DVIVIDINE-------------------KAVEKA----KKLG----LN 61 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC------EEEEEECCH-------------------HHHHHH----HHhC----Ce
Confidence 34689999999 99999999999997 888887332 122222 2221 33
Q ss_pred EeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEE
Q 003715 291 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLE 341 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~ 341 (800)
+....+... +.++.+++|+|....=.++....+-+.+.+.+.+++-
T Consensus 62 ~v~dDlf~p-----~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i 107 (134)
T PRK04148 62 AFVDDLFNP-----NLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLII 107 (134)
T ss_pred EEECcCCCC-----CHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence 444433322 2356789999999988888888999999999998873
No 103
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=93.23 E-value=0.2 Score=54.92 Aligned_cols=33 Identities=30% Similarity=0.590 Sum_probs=29.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.||.|||+|++|+.++..|+..|++ .+|.++|.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~----~ei~l~D~ 33 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIA----DELVLIDI 33 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC
Confidence 3799999999999999999999983 48999873
No 104
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.20 E-value=0.27 Score=57.12 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=67.7
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCe
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 288 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~ 288 (800)
.|++.+|+|||.|.+|..=++.|..+|. +|+++-++. .+ .+.++-..-+
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga------~v~visp~~------------~~-------------~~~~l~~~~~ 57 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA------RLTVNALAF------------IP-------------QFTAWADAGM 57 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEcCCC------------CH-------------HHHHHHhCCC
Confidence 5788999999999999999999999996 888874431 10 1111111223
Q ss_pred EEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEE
Q 003715 289 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLL 340 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli 340 (800)
++.+...+. ...+.++++||.|+|+.+.-..+.+.|...++++-
T Consensus 58 i~~~~~~~~--------~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN 101 (457)
T PRK10637 58 LTLVEGPFD--------ESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCN 101 (457)
T ss_pred EEEEeCCCC--------hHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEE
Confidence 555544332 34567899999999999999999999999888654
No 105
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.09 E-value=0.37 Score=52.80 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=28.4
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~------~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL------QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC------eEEEEECC
Confidence 479999999999999999999997 78888743
No 106
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=92.89 E-value=0.12 Score=57.23 Aligned_cols=90 Identities=20% Similarity=0.295 Sum_probs=57.9
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccc-cCCccccccccCccCccHHHHHHHHHHHHCCCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEK-SNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 287 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~-sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v 287 (800)
.|.+++|.|||+|.||+.+++-|...|+ ++...|.-.-.. ..... - .....+.++-+..
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm------~v~~~d~~~~~~~~~~~~----------~----~~~~~Ld~lL~~s 198 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGM------KVIGYDPYSPRERAGVDG----------V----VGVDSLDELLAEA 198 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCC------eEEEECCCCchhhhcccc----------c----eecccHHHHHhhC
Confidence 6889999999999999999999999999 888887522111 11000 0 0112233344445
Q ss_pred eEEEeeccCCcchhcccchhhccCC---CEEEEc
Q 003715 288 NTEALQIRANPETENVFNDTFWENL---NVVVNA 318 (800)
Q Consensus 288 ~i~~~~~~v~~~~~~~~~~~f~~~~---dvVi~a 318 (800)
.|...+..++++|..+++.+.+... .++|||
T Consensus 199 Div~lh~PlT~eT~g~i~~~~~a~MK~gailIN~ 232 (324)
T COG0111 199 DILTLHLPLTPETRGLINAEELAKMKPGAILINA 232 (324)
T ss_pred CEEEEcCCCCcchhcccCHHHHhhCCCCeEEEEC
Confidence 6666777777777777766654333 366776
No 107
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=92.88 E-value=0.13 Score=51.42 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=29.7
Q ss_pred HHHcCcEEEEcCCch-HHHHHHHHHHhcccCCCCcceeecC
Q 003715 209 KLEEAKVFVVGSGAL-GCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlIvG~Ggi-G~evlknLal~Gv~~~~~g~i~liD 248 (800)
.|.+++|+|||+|.+ |..++++|...|+ ++++++
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~------~V~v~~ 75 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA------TVTVCH 75 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC------EEEEEE
Confidence 478899999999985 8889999999997 578776
No 108
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.85 E-value=0.64 Score=50.41 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=28.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~------~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF------DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC------eEEEEeCC
Confidence 479999999999999999999997 79999854
No 109
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.75 E-value=0.25 Score=54.45 Aligned_cols=75 Identities=25% Similarity=0.317 Sum_probs=50.7
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCC-eEE
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL-NTE 290 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v-~i~ 290 (800)
..||.|||+|.+|+.++-.|+..|+. .+|.|+| +...|+...+.-+....|.. ++.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~----~el~L~D-------------------~~~~~~~g~~~Dl~~~~~~~~~~~ 62 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIA----DELVIID-------------------INKEKAEGDAMDLSHAVPFTSPTK 62 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEe-------------------CCCchhHHHHHHHHhhccccCCeE
Confidence 46999999999999999999999984 5799986 33445555666666655422 122
Q ss_pred EeeccCCcchhcccchhhccCCCEEEEcc
Q 003715 291 ALQIRANPETENVFNDTFWENLNVVVNAL 319 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~ 319 (800)
.... + .+-++++|+||.+.
T Consensus 63 i~~~-----~-----~~~~~~adivIita 81 (315)
T PRK00066 63 IYAG-----D-----YSDCKDADLVVITA 81 (315)
T ss_pred EEeC-----C-----HHHhCCCCEEEEec
Confidence 2111 1 12258899988764
No 110
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.71 E-value=0.09 Score=55.17 Aligned_cols=37 Identities=30% Similarity=0.541 Sum_probs=33.6
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCc--ceeecCCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQG--KLTITDDD 250 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g--~i~liD~D 250 (800)
.+++.+|+|+|+|+.|+.+++.|+..|+ . +|+++|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~-----~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGA-----KPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCc-----CcceEEEEeCC
Confidence 4777899999999999999999999999 6 89999865
No 111
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.55 E-value=0.39 Score=52.76 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=49.2
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCC---CeEE
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPH---LNTE 290 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~---v~i~ 290 (800)
||.|||+|.+|+.+|-.|+..|++ ++|.|+| +-+.|+...+.-|....+. .+++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~----~elvL~D-------------------i~~~~a~g~a~DL~~~~~~~~~~~~~ 57 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF----SEIVLID-------------------VNEGVAEGEALDFHHATALTYSTNTK 57 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC----CEEEEEe-------------------CCcchhhHHHHHHHhhhccCCCCCEE
Confidence 689999999999999999999985 6899997 3344555556666654431 1222
Q ss_pred EeeccCCcchhcccchhhccCCCEEEEcc
Q 003715 291 ALQIRANPETENVFNDTFWENLNVVVNAL 319 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~ 319 (800)
.+.. + .+-++++|+||-+.
T Consensus 58 i~~~---~-------y~~~~~aDivvita 76 (307)
T cd05290 58 IRAG---D-------YDDCADADIIVITA 76 (307)
T ss_pred EEEC---C-------HHHhCCCCEEEECC
Confidence 2221 1 12357889887764
No 112
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.37 E-value=0.093 Score=56.95 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=28.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
++|.|||+|.+|+.++.+|+..|. +++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~------~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF------QTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC------cEEEEeCC
Confidence 479999999999999999999997 88898855
No 113
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=92.37 E-value=0.39 Score=51.50 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=51.4
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCe
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 288 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~ 288 (800)
+...+++|-|| ||||-|+++.||+-|. +++|+- | -+.|-+.+++.+.... .++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~------~liLva---------------R----~~~kL~~la~~l~~~~-~v~ 57 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY------NLILVA---------------R----REDKLEALAKELEDKT-GVE 57 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC------EEEEEe---------------C----cHHHHHHHHHHHHHhh-Cce
Confidence 35678999996 8999999999999998 777762 2 2567888899998887 788
Q ss_pred EEEeeccCCcc
Q 003715 289 TEALQIRANPE 299 (800)
Q Consensus 289 i~~~~~~v~~~ 299 (800)
++.+..+++..
T Consensus 58 v~vi~~DLs~~ 68 (265)
T COG0300 58 VEVIPADLSDP 68 (265)
T ss_pred EEEEECcCCCh
Confidence 88888777654
No 114
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.27 E-value=0.19 Score=49.73 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=25.3
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
.+|.+||+|..|+.++++|+..|. .+++.|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~------~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY------EVTVYD 31 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT------EEEEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC------eEEeec
Confidence 479999999999999999999998 777775
No 115
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.19 E-value=0.49 Score=52.14 Aligned_cols=74 Identities=24% Similarity=0.231 Sum_probs=49.9
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCC---e
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL---N 288 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v---~ 288 (800)
..||.|||+|.+|+.++-.|++.|++ .+|.|+|- ...|+...+.-+....|.. +
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~----~el~LiD~-------------------~~~~~~g~a~Dl~~~~~~~~~~~ 59 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLA----DELVLVDV-------------------VEDKLKGEAMDLQHGSAFLKNPK 59 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC-------------------CccHHHHHHHHHHHhhccCCCCE
Confidence 35899999999999999999999985 67999972 2235555565566554322 2
Q ss_pred EEEeeccCCcchhcccchhhccCCCEEEEcc
Q 003715 289 TEALQIRANPETENVFNDTFWENLNVVVNAL 319 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~ 319 (800)
|.... +.+-++++|+||.+.
T Consensus 60 v~~~~-----------dy~~~~~adivvita 79 (312)
T cd05293 60 IEADK-----------DYSVTANSKVVIVTA 79 (312)
T ss_pred EEECC-----------CHHHhCCCCEEEECC
Confidence 22210 112368899998764
No 116
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.12 E-value=0.35 Score=53.47 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=30.6
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
++..||.|||+|.+|+.++-.++..|+ ..|+|+|-
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl-----~~i~LvDi 38 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNL-----GDVVLFDI 38 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-----CeEEEEeC
Confidence 455799999999999999999999998 46999984
No 117
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=91.96 E-value=0.44 Score=52.46 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=32.0
Q ss_pred HHHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 207 QKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 207 q~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
.+.|++++|.|||.|.+|..++++|..+|+ ++++.|
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~------~ViV~~ 46 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGV------EVVVGV 46 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcC------EEEEEE
Confidence 468999999999999999999999999999 666654
No 118
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=91.57 E-value=0.21 Score=54.98 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=30.7
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.+.+++|.|||.|.||.++++.|...|+ ++..+|.
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~------~V~~~~~ 167 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGF------PLRCWSR 167 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeC
Confidence 4678899999999999999999999998 6777763
No 119
>PLN02602 lactate dehydrogenase
Probab=91.46 E-value=0.47 Score=53.09 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=49.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCC---CCeE
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINP---HLNT 289 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np---~v~i 289 (800)
.||.|||+|.+|+.++-.|+..|++ ++|.|+| +.+.|+...+.-+....+ .++|
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~----~el~LiD-------------------i~~~~~~g~a~DL~~~~~~~~~~~i 94 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLA----DELALVD-------------------VNPDKLRGEMLDLQHAAAFLPRTKI 94 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC----CEEEEEe-------------------CCCchhhHHHHHHHhhhhcCCCCEE
Confidence 5999999999999999999999985 6899997 233455555555554433 2233
Q ss_pred EEeeccCCcchhcccchhhccCCCEEEEcc
Q 003715 290 EALQIRANPETENVFNDTFWENLNVVVNAL 319 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~ 319 (800)
... .+ .+.++++|+||-+.
T Consensus 95 ~~~-----~d------y~~~~daDiVVitA 113 (350)
T PLN02602 95 LAS-----TD------YAVTAGSDLCIVTA 113 (350)
T ss_pred EeC-----CC------HHHhCCCCEEEECC
Confidence 221 01 13368999998774
No 120
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=91.35 E-value=0.37 Score=52.98 Aligned_cols=35 Identities=40% Similarity=0.621 Sum_probs=31.4
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+.+.+|+|+|+|.+|..+++.|...|. ..|+++|.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~-----~~V~v~~r 210 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGV-----AEITIANR 210 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCC-----CEEEEEeC
Confidence 678999999999999999999999888 78888863
No 121
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=91.11 E-value=0.58 Score=51.21 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=49.6
Q ss_pred EEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCC---CeEEE
Q 003715 215 VFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPH---LNTEA 291 (800)
Q Consensus 215 VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~---v~i~~ 291 (800)
|.|||+|++|+.++-.|+..|++ .+|+++|. -+.|+...+..+....+. +++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~----~el~l~D~-------------------~~~~~~g~~~DL~~~~~~~~~~~i~~ 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLA----SELVLVDV-------------------NEEKAKGDALDLSHASAFLATGTIVR 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC-------------------CccHHHHHHHhHHHhccccCCCeEEE
Confidence 57999999999999999999984 57999973 335566666667666543 12211
Q ss_pred eeccCCcchhcccchhhccCCCEEEEccC
Q 003715 292 LQIRANPETENVFNDTFWENLNVVVNALD 320 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~D 320 (800)
..+ .+-+.++|+||.+..
T Consensus 58 -----~~~------~~~l~~aDiVIitag 75 (300)
T cd00300 58 -----GGD------YADAADADIVVITAG 75 (300)
T ss_pred -----CCC------HHHhCCCCEEEEcCC
Confidence 111 123578999998853
No 122
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.98 E-value=0.61 Score=47.40 Aligned_cols=83 Identities=18% Similarity=0.165 Sum_probs=52.2
Q ss_pred HHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCC
Q 003715 209 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 287 (800)
Q Consensus 209 ~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v 287 (800)
.+++++++|+|+ |++|..+++.|+..|. ++++++.+ ..|++.+++.+.+.. ..
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~------~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~ 78 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA------RVVLVGRD-------------------LERAQKAADSLRARF-GE 78 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEcCC-------------------HHHHHHHHHHHHhhc-CC
Confidence 356789999996 9999999999998875 77776532 235555666554322 23
Q ss_pred eEEEeeccCCcchhcccchhhccCCCEEEEccCCH
Q 003715 288 NTEALQIRANPETENVFNDTFWENLNVVVNALDNV 322 (800)
Q Consensus 288 ~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~ 322 (800)
.+.... ... .+.+ .+.+.++|+||+|+-..
T Consensus 79 ~~~~~~--~~~-~~~~--~~~~~~~diVi~at~~g 108 (194)
T cd01078 79 GVGAVE--TSD-DAAR--AAAIKGADVVFAAGAAG 108 (194)
T ss_pred cEEEee--CCC-HHHH--HHHHhcCCEEEECCCCC
Confidence 333321 111 1111 23567899999987543
No 123
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=90.98 E-value=0.87 Score=53.22 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=67.8
Q ss_pred HHHHHHHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHH
Q 003715 204 SKLQKKLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAAL 282 (800)
Q Consensus 204 ~~~q~~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~ 282 (800)
....+.+.+++|+|-|+ |++|+|+++.++..+. .+|.++|. +..|-......+++
T Consensus 242 ~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p-----~~i~l~~~-------------------~E~~~~~i~~el~~ 297 (588)
T COG1086 242 ELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNP-----KEIILFSR-------------------DEYKLYLIDMELRE 297 (588)
T ss_pred HHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCC-----CEEEEecC-------------------chHHHHHHHHHHHh
Confidence 45577899999999996 7899999999999999 89999864 44566667778888
Q ss_pred HCCCCeEEEeeccCCcchhcccchhhccC--CCEEEEc
Q 003715 283 INPHLNTEALQIRANPETENVFNDTFWEN--LNVVVNA 318 (800)
Q Consensus 283 ~np~v~i~~~~~~v~~~~~~~~~~~f~~~--~dvVi~a 318 (800)
..|..++..+-..+.+... + ...+++ .|+|+-|
T Consensus 298 ~~~~~~~~~~igdVrD~~~-~--~~~~~~~kvd~VfHA 332 (588)
T COG1086 298 KFPELKLRFYIGDVRDRDR-V--ERAMEGHKVDIVFHA 332 (588)
T ss_pred hCCCcceEEEecccccHHH-H--HHHHhcCCCceEEEh
Confidence 8888899998888764321 1 123445 7888876
No 124
>PRK05854 short chain dehydrogenase; Provisional
Probab=90.74 E-value=0.62 Score=51.05 Aligned_cols=63 Identities=22% Similarity=0.315 Sum_probs=42.4
Q ss_pred HHcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCe
Q 003715 210 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 288 (800)
Q Consensus 210 L~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~ 288 (800)
+.+++++|.| .||||.++++.|+..|. ++++++.+ ..|.+.+.+.+.+..++.+
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~------~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~ 66 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA------EVILPVRN-------------------RAKGEAAVAAIRTAVPDAK 66 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeCC-------------------HHHHHHHHHHHHHhCCCCc
Confidence 4567888888 48999999999999997 77776432 1344455555555555555
Q ss_pred EEEeeccCC
Q 003715 289 TEALQIRAN 297 (800)
Q Consensus 289 i~~~~~~v~ 297 (800)
+..+...+.
T Consensus 67 v~~~~~Dl~ 75 (313)
T PRK05854 67 LSLRALDLS 75 (313)
T ss_pred eEEEEecCC
Confidence 555544443
No 125
>PLN00203 glutamyl-tRNA reductase
Probab=90.63 E-value=0.33 Score=57.06 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=30.6
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
|.+.+|+|||+|.+|..++++|...|+ .+|++++
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~-----~~V~V~n 297 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGC-----TKMVVVN 297 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCC-----CeEEEEe
Confidence 557999999999999999999999998 7888874
No 126
>PRK13243 glyoxylate reductase; Reviewed
Probab=90.61 E-value=0.41 Score=53.25 Aligned_cols=35 Identities=11% Similarity=0.258 Sum_probs=31.5
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.|.+++|.|||.|.||.++++.|...|+ ++..+|.
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~------~V~~~d~ 181 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGM------RILYYSR 181 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5889999999999999999999998887 6777774
No 127
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.59 E-value=0.39 Score=52.19 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=30.2
Q ss_pred HHHcCcEEEEcCCc-hHHHHHHHHHHhcccCCCCcceeecC
Q 003715 209 KLEEAKVFVVGSGA-LGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlIvG~Gg-iG~evlknLal~Gv~~~~~g~i~liD 248 (800)
.+++++|+|+|+|+ +|..++..|...|. ++++++
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga------tVtv~~ 190 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA------TVTICH 190 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC------EEEEEe
Confidence 47888999999999 99999999999986 788875
No 128
>PRK06197 short chain dehydrogenase; Provisional
Probab=90.40 E-value=0.6 Score=50.77 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=29.0
Q ss_pred HHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 209 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.+.+++|+|.|+ ||||.++++.|+..|. ++++++.
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~------~vi~~~r 48 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGA------HVVLAVR 48 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCC------EEEEEeC
Confidence 456778999985 9999999999999997 6767653
No 129
>PRK07063 short chain dehydrogenase; Provisional
Probab=90.25 E-value=0.88 Score=47.92 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=43.1
Q ss_pred HHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCC
Q 003715 209 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 287 (800)
Q Consensus 209 ~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v 287 (800)
++.+++|+|.|+ ||||.++++.|+..|. +++++|.+ ..+.+.+++.+...++..
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~------~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~ 58 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA------AVALADLD-------------------AALAERAAAAIARDVAGA 58 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC-------------------HHHHHHHHHHHHhccCCc
Confidence 366788999985 8999999999999997 67777521 234444555555444444
Q ss_pred eEEEeeccCC
Q 003715 288 NTEALQIRAN 297 (800)
Q Consensus 288 ~i~~~~~~v~ 297 (800)
++..+...+.
T Consensus 59 ~~~~~~~Dl~ 68 (260)
T PRK07063 59 RVLAVPADVT 68 (260)
T ss_pred eEEEEEccCC
Confidence 5555555444
No 130
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=90.21 E-value=0.71 Score=52.15 Aligned_cols=35 Identities=29% Similarity=0.500 Sum_probs=32.0
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.|.+++|.|||+|.||+.+++.|...|+ ++...|.
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~------~V~~~dp 147 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI------KTLLCDP 147 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5889999999999999999999999998 7888874
No 131
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=90.02 E-value=0.75 Score=50.65 Aligned_cols=88 Identities=14% Similarity=0.145 Sum_probs=55.8
Q ss_pred HHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCC
Q 003715 208 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 287 (800)
Q Consensus 208 ~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v 287 (800)
..|.+++|.|||.|.||.++++.+...|+ ++..+|.-... + +.|-.. ..+.++.+..
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm------~V~~~d~~~~~-----~-------~~~~~~-----~~l~ell~~s 197 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGA------KVVYYSTSGKN-----K-------NEEYER-----VSLEELLKTS 197 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCC------EEEEECCCccc-----c-------ccCcee-----ecHHHHhhcC
Confidence 36889999999999999999999987777 78887752110 0 111111 1234444455
Q ss_pred eEEEeeccCCcchhcccchhhccC---CCEEEEc
Q 003715 288 NTEALQIRANPETENVFNDTFWEN---LNVVVNA 318 (800)
Q Consensus 288 ~i~~~~~~v~~~~~~~~~~~f~~~---~dvVi~a 318 (800)
.+.......+++|.++++.+.+.. --++||+
T Consensus 198 Dvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~ 231 (311)
T PRK08410 198 DIISIHAPLNEKTKNLIAYKELKLLKDGAILINV 231 (311)
T ss_pred CEEEEeCCCCchhhcccCHHHHHhCCCCeEEEEC
Confidence 666666666777777776665532 2355655
No 132
>PRK09242 tropinone reductase; Provisional
Probab=89.90 E-value=1 Score=47.29 Aligned_cols=65 Identities=15% Similarity=0.251 Sum_probs=46.2
Q ss_pred HHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCC
Q 003715 209 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 287 (800)
Q Consensus 209 ~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v 287 (800)
++.+++++|+|+ |+||.++++.|+..|. ++++++.+ ..+.+.+.+.+...+|+.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~------~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~ 60 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA------DVLIVARD-------------------ADALAQARDELAEEFPER 60 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeCC-------------------HHHHHHHHHHHHhhCCCC
Confidence 356788999985 8999999999999997 68877632 123444556666666666
Q ss_pred eEEEeeccCCc
Q 003715 288 NTEALQIRANP 298 (800)
Q Consensus 288 ~i~~~~~~v~~ 298 (800)
++..+...+..
T Consensus 61 ~~~~~~~Dl~~ 71 (257)
T PRK09242 61 EVHGLAADVSD 71 (257)
T ss_pred eEEEEECCCCC
Confidence 77776665543
No 133
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.89 E-value=0.71 Score=52.92 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=31.5
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+.+.+|+|+|+|.+|..+++.|..+|+ +++++|.|
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga------~ViV~d~d 244 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA------RVIVTEVD 244 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCC
Confidence 578999999999999999999999998 78888744
No 134
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=89.87 E-value=0.74 Score=58.18 Aligned_cols=104 Identities=13% Similarity=0.248 Sum_probs=61.0
Q ss_pred HcCcEEEEcCCchHHHHHHHHHHhcccC-----CC---CcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHH
Q 003715 211 EEAKVFVVGSGALGCEFLKNLALMGVSC-----GN---QGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAAL 282 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal~Gv~~-----~~---~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~ 282 (800)
+.++|+|+|||.+|..+++.|+..+-.. +. .-.+++.|.+ ..+++.+++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~-------------------~~~a~~la~~--- 625 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY-------------------LKDAKETVEG--- 625 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC-------------------HHHHHHHHHh---
Confidence 4679999999999999999998864210 00 0124554422 2233333332
Q ss_pred HCCCCeEEEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEec
Q 003715 283 INPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG 343 (800)
Q Consensus 283 ~np~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg 343 (800)
.|++. +..-.+.+ .+.+ .++++++|+||+|+-.. .-..+...|..+++.+++..
T Consensus 626 -~~~~~--~v~lDv~D-~e~L--~~~v~~~DaVIsalP~~-~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 626 -IENAE--AVQLDVSD-SESL--LKYVSQVDVVISLLPAS-CHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred -cCCCc--eEEeecCC-HHHH--HHhhcCCCEEEECCCch-hhHHHHHHHHHcCCCEEECc
Confidence 34432 22222322 1222 23457899999998663 23467778888888888653
No 135
>PRK07574 formate dehydrogenase; Provisional
Probab=89.82 E-value=0.43 Score=54.10 Aligned_cols=35 Identities=40% Similarity=0.568 Sum_probs=31.6
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.|.+++|.|||.|.||.++++.|...|+ +++..|.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~------~V~~~dr 223 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV------KLHYTDR 223 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECC
Confidence 5889999999999999999999999998 7777763
No 136
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=89.69 E-value=0.99 Score=43.61 Aligned_cols=28 Identities=29% Similarity=0.659 Sum_probs=25.1
Q ss_pred EEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 215 VFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 215 VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
|+|+|+|++|+.++-.|+..|. ++++++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~------~V~l~~ 28 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH------DVTLVS 28 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC------EEEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC------ceEEEE
Confidence 7899999999999999999987 677764
No 137
>PRK06487 glycerate dehydrogenase; Provisional
Probab=89.61 E-value=0.62 Score=51.47 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=30.8
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.|.+++|.|||.|.||.++++-|...|+ ++...|.
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm------~V~~~~~ 179 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGM------RVLIGQL 179 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCC------EEEEECC
Confidence 5899999999999999999999988887 6777664
No 138
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=89.54 E-value=0.79 Score=49.31 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=28.4
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
..+++++|+|+||+|..++..|+..|. +++++|
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~------~v~v~~ 147 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC------NVIIAN 147 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC------EEEEEe
Confidence 346789999999999999999999886 777775
No 139
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.32 E-value=1.5 Score=46.85 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=26.2
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
.+|.|||+|.+|+.++..|...|. ....+.++|
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~---~~~~v~v~~ 35 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGV---PAKDIIVSD 35 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCC---CcceEEEEc
Confidence 479999999999999999999884 113566665
No 140
>PRK07062 short chain dehydrogenase; Provisional
Probab=89.29 E-value=1.3 Score=46.84 Aligned_cols=63 Identities=19% Similarity=0.157 Sum_probs=43.9
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCe
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 288 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~ 288 (800)
++++.++|.|+ ||||.++++.|+..|. ++++++.+. .+.+.+++.+.+..|+.+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~------~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~ 60 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA------SVAICGRDE-------------------ERLASAEARLREKFPGAR 60 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC------eEEEEeCCH-------------------HHHHHHHHHHHhhCCCce
Confidence 56678999986 7999999999999997 677765321 234445556666666666
Q ss_pred EEEeeccCC
Q 003715 289 TEALQIRAN 297 (800)
Q Consensus 289 i~~~~~~v~ 297 (800)
+..+...+.
T Consensus 61 ~~~~~~D~~ 69 (265)
T PRK07062 61 LLAARCDVL 69 (265)
T ss_pred EEEEEecCC
Confidence 666555444
No 141
>PRK06932 glycerate dehydrogenase; Provisional
Probab=89.29 E-value=0.68 Score=51.07 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=30.1
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
.|.+++|.|||.|.||.++++-|...|+ ++..+|
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~------~V~~~~ 177 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGM------KVLYAE 177 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCC------EEEEEC
Confidence 6899999999999999999999988887 666665
No 142
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=89.26 E-value=0.99 Score=40.08 Aligned_cols=90 Identities=19% Similarity=0.271 Sum_probs=51.9
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeec-CCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEe
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTIT-DDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 292 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~li-D~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~ 292 (800)
||.|||+|.+|..+++.|+..|+ ...++.++ + | ...|+. .+.+..+ +.+...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~---~~~~v~~~~~----------r---------~~~~~~----~~~~~~~-~~~~~~ 53 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI---KPHEVIIVSS----------R---------SPEKAA----ELAKEYG-VQATAD 53 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS----GGEEEEEEE----------S---------SHHHHH----HHHHHCT-TEEESE
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CceeEEeecc----------C---------cHHHHH----HHHHhhc-cccccC
Confidence 68999999999999999999995 12455543 2 1 112222 2223333 111110
Q ss_pred eccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhh-cccccccEEE
Q 003715 293 QIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQR-CLYFQKPLLE 341 (800)
Q Consensus 293 ~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~-c~~~~~pli~ 341 (800)
+ +.+..+..|+||.|+........+... ....++-+|+
T Consensus 54 ------~-----~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis 92 (96)
T PF03807_consen 54 ------D-----NEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVIS 92 (96)
T ss_dssp ------E-----HHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred ------C-----hHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEE
Confidence 1 124457899999999887777766655 2333444544
No 143
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=88.91 E-value=2 Score=50.37 Aligned_cols=32 Identities=22% Similarity=0.501 Sum_probs=28.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.+|.|||+|.+|+.++.+|+..|. .+++.|.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~------~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI------DVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCC
Confidence 479999999999999999999998 88898853
No 144
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=88.84 E-value=0.43 Score=52.14 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=27.2
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+|.|||+|.+|+.++.+|+..|. ++.+.|.+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~------~V~~~dr~ 32 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH------DCVGYDHD 32 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC------EEEEEECC
Confidence 69999999999999999999997 67777643
No 145
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=88.72 E-value=0.62 Score=50.92 Aligned_cols=118 Identities=13% Similarity=0.142 Sum_probs=62.6
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHH-CCCCeEEEe
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALI-NPHLNTEAL 292 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~-np~v~i~~~ 292 (800)
+|.|||+|.+|+.++++|+..|. ++++.|.+.-....+. +.|-.-+....+.+... ++++-+...
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~------~v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH------EVVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC------eEEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEe
Confidence 79999999999999999999997 7888876531111110 01111111122222222 345444444
Q ss_pred eccCCcchhcccc--hhhccCCCEEEEccC-CHHHHHHHhhhcccccccEEEecccCc
Q 003715 293 QIRANPETENVFN--DTFWENLNVVVNALD-NVNARLYIDQRCLYFQKPLLESGTLGA 347 (800)
Q Consensus 293 ~~~v~~~~~~~~~--~~f~~~~dvVi~a~D-n~~ar~~v~~~c~~~~~pli~sg~~G~ 347 (800)
... ......++ ...+..-++||++.- ++..-..+.+.+...++-++++.+.|.
T Consensus 68 ~~~--~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~ 123 (301)
T PRK09599 68 PAG--EITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG 123 (301)
T ss_pred cCC--cHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence 331 01111111 012334467777633 333334455667777888888777764
No 146
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=88.70 E-value=0.45 Score=41.87 Aligned_cols=35 Identities=34% Similarity=0.441 Sum_probs=31.7
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+..++++|+|+|++|..++..|...|. .++.+.|.
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~-----~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGG-----KKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcC
Confidence 678899999999999999999999976 68999876
No 147
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.49 E-value=1.2 Score=48.86 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=29.2
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
..+|.|+|+|.+|+.+++.|+..|. .+++.|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~------~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH------RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 4589999999999999999999997 78888754
No 148
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=88.40 E-value=0.71 Score=50.60 Aligned_cols=108 Identities=22% Similarity=0.315 Sum_probs=62.2
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCccc--------ccCCccccccccCccCccHHHHHHHHHHHHC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIE--------KSNLSRQFLFRDWNIGQAKSTVAASAAALIN 284 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie--------~sNLnRQflf~~~dIG~~Ka~va~~~l~~~n 284 (800)
.+|.|||+|-.|+-+|..+|..|+ .+++.|...=. ..+|.|+. .-|+.+.+.+...+.++.
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~------~V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~ 72 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY------DVVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARIT 72 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC------ceEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhcc
Confidence 589999999999999999999777 88998865110 11122221 113333333333333333
Q ss_pred CCCeEEEeeccCCcchhcccchhhccCCCEEEEcc-CCHHHHHHHhhhcccccc--cEEEecccCcc
Q 003715 285 PHLNTEALQIRANPETENVFNDTFWENLNVVVNAL-DNVNARLYIDQRCLYFQK--PLLESGTLGAK 348 (800)
Q Consensus 285 p~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~-Dn~~ar~~v~~~c~~~~~--pli~sg~~G~~ 348 (800)
+... ..-++.+|+||.|+ -+.+.++.+-+..-.+-. .++.+.|.+..
T Consensus 73 ~~~~-----------------~~~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~ 122 (307)
T COG1250 73 PTTD-----------------LAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLS 122 (307)
T ss_pred ccCc-----------------hhHhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCC
Confidence 2211 11357899999886 456666544333322222 36777766643
No 149
>PLN03139 formate dehydrogenase; Provisional
Probab=88.38 E-value=0.52 Score=53.44 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=31.9
Q ss_pred HHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 208 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 208 ~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
..|.+++|.|||+|.||..+++.|...|+ ++...|.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~------~V~~~d~ 230 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNC------NLLYHDR 230 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCC------EEEEECC
Confidence 36899999999999999999999999998 6777764
No 150
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=88.30 E-value=0.6 Score=52.84 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=31.9
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.|.+++|.|||+|.||..+++.|...|+ ++...|.
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~------~V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGW------KVLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5788999999999999999999999998 7888875
No 151
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=88.25 E-value=1.5 Score=46.95 Aligned_cols=92 Identities=24% Similarity=0.291 Sum_probs=55.7
Q ss_pred CcEEEEcC-CchHHHHHHHHHHh-cccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEE
Q 003715 213 AKVFVVGS-GALGCEFLKNLALM-GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 290 (800)
Q Consensus 213 ~~VlIvG~-GgiG~evlknLal~-Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~ 290 (800)
.||.|+|| |.+|..+++.+... ++ --..++|.+. +...+. ....+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~-----elvav~d~~~---~~~~~~------------------------~~~~i~ 49 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDL-----ELVAAVDRPG---SPLVGQ------------------------GALGVA 49 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCC-----EEEEEEecCC---cccccc------------------------CCCCcc
Confidence 48999999 99999999988764 44 2233455432 111000 001111
Q ss_pred EeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcc
Q 003715 291 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAK 348 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~ 348 (800)
.+ .+- ++.+..+|+||+++ .+.+-..+-..|..+++|++ .|+.|+.
T Consensus 50 ~~-----~dl-----~~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vv-igttG~s 95 (257)
T PRK00048 50 IT-----DDL-----EAVLADADVLIDFT-TPEATLENLEFALEHGKPLV-IGTTGFT 95 (257)
T ss_pred cc-----CCH-----HHhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEE-EECCCCC
Confidence 11 111 12345789999998 55555777789999999999 4466644
No 152
>PLN02780 ketoreductase/ oxidoreductase
Probab=87.98 E-value=1.7 Score=47.95 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=42.1
Q ss_pred cCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEE
Q 003715 212 EAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 290 (800)
Q Consensus 212 ~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~ 290 (800)
++.++|.|+ ||||.++++.|+..|. ++++++.+ ..|.+.+++.+....+..++.
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~------~Vil~~R~-------------------~~~l~~~~~~l~~~~~~~~~~ 107 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL------NLVLVARN-------------------PDKLKDVSDSIQSKYSKTQIK 107 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC------CEEEEECC-------------------HHHHHHHHHHHHHHCCCcEEE
Confidence 457889985 8999999999999997 78887532 234555666676666655555
Q ss_pred EeeccC
Q 003715 291 ALQIRA 296 (800)
Q Consensus 291 ~~~~~v 296 (800)
.+...+
T Consensus 108 ~~~~Dl 113 (320)
T PLN02780 108 TVVVDF 113 (320)
T ss_pred EEEEEC
Confidence 554433
No 153
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.96 E-value=0.56 Score=57.56 Aligned_cols=164 Identities=18% Similarity=0.205 Sum_probs=83.4
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccc------cccccCccCccHHHHHHHHHHHHCCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQ------FLFRDWNIGQAKSTVAASAAALINPH 286 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQ------flf~~~dIG~~Ka~va~~~l~~~np~ 286 (800)
.+|.|||+|..|+.++-.+++.|. .++++|.+.= .+.|- .+-+.-.-|+.....+.+.+.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~------~V~l~d~~~~---~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~---- 380 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV------PVIMKDINQK---ALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSS---- 380 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC------eEEEEeCCHH---HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhC----
Confidence 579999999999999999999998 8999985522 12110 0000001122111111122111
Q ss_pred CeEEEeeccCCcchhcccchhhccCCCEEEEcc-CCHHHHHHHhhhcccccc--cEEEecccCcccc-eEEEeCCccccc
Q 003715 287 LNTEALQIRANPETENVFNDTFWENLNVVVNAL-DNVNARLYIDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENY 362 (800)
Q Consensus 287 v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~-Dn~~ar~~v~~~c~~~~~--pli~sg~~G~~G~-v~~iip~~t~~y 362 (800)
|+.. + + + +-++++|+||.|+ .+.+.++.+-...-.+-. .+|.+.|.+.-=. ..-.+.+-..+.
T Consensus 381 --i~~~-------~-~-~--~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~ 447 (715)
T PRK11730 381 --IRPT-------L-D-Y--AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFC 447 (715)
T ss_pred --eEEe-------C-C-H--HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEE
Confidence 1111 1 1 1 1247999999985 566666543333222212 3565555553210 000111111122
Q ss_pred CCC-CCCCCCCCCCccccCCCCCcchhHHHHHhhhhhhhccCh
Q 003715 363 GAS-RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP 404 (800)
Q Consensus 363 ~~~-~~p~~~~~p~ctl~~fP~~~~h~i~wa~~~F~~~F~~~~ 404 (800)
+.+ -.|+ ...|...+-.-+.+-..++.++.+++.. .+..|
T Consensus 448 g~Hff~P~-~~~~lVEvv~g~~T~~~~~~~~~~~~~~-lgk~p 488 (715)
T PRK11730 448 GMHFFNPV-HRMPLVEVIRGEKTSDETIATVVAYASK-MGKTP 488 (715)
T ss_pred EEecCCcc-cccceEEeeCCCCCCHHHHHHHHHHHHH-hCCce
Confidence 221 1222 2356666666677778888888886654 34444
No 154
>PRK06436 glycerate dehydrogenase; Provisional
Probab=87.95 E-value=0.38 Score=52.78 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=32.0
Q ss_pred HHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 208 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 208 ~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
..|.+++|.|||.|.||.++++.|...|+ ++...|..
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~------~V~~~~r~ 154 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGM------NIYAYTRS 154 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECCC
Confidence 36889999999999999999998887787 78888753
No 155
>PTZ00325 malate dehydrogenase; Provisional
Probab=87.92 E-value=0.74 Score=50.92 Aligned_cols=36 Identities=28% Similarity=0.285 Sum_probs=30.8
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
++..||.|+|+ |.||+.++-.|+..|++ .+|.|+|-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~----~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHV----SELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCC----CEEEEEec
Confidence 44569999998 99999999999988874 68999984
No 156
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=87.92 E-value=1.6 Score=48.22 Aligned_cols=110 Identities=15% Similarity=0.216 Sum_probs=68.0
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEE
Q 003715 213 AKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 291 (800)
Q Consensus 213 ~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~ 291 (800)
.+|.|+|+ |.+|.++++.|....+ +...+. ++++....|+.=.+ ...
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f---~~~~~~---------------~~AS~rSaG~~~~~--------------f~~ 49 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHF---PFEELV---------------LLASARSAGKKYIE--------------FGG 49 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCC---CcceEE---------------EEecccccCCcccc--------------ccC
Confidence 58999997 9999999999998665 111122 35666666763000 000
Q ss_pred eeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEE-ecccCcccceEEEeCCc
Q 003715 292 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLE-SGTLGAKCNTQMVIPHL 358 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~-sg~~G~~G~v~~iip~~ 358 (800)
....+.+ ...+..-|+++|+|+.|.....++.+ ...+.+.|.++|+ ++.+-+.-.|.+++|.+
T Consensus 50 ~~~~v~~---~~~~~~~~~~~Divf~~ag~~~s~~~-~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeV 113 (334)
T COG0136 50 KSIGVPE---DAADEFVFSDVDIVFFAAGGSVSKEV-EPKAAEAGCVVIDNSSAFRMDPDVPLVVPEV 113 (334)
T ss_pred ccccCcc---ccccccccccCCEEEEeCchHHHHHH-HHHHHHcCCEEEeCCcccccCCCCCEecCCc
Confidence 0011111 11223346799999999977666544 4566778888885 55566666677777764
No 157
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.86 E-value=0.46 Score=58.19 Aligned_cols=160 Identities=14% Similarity=0.146 Sum_probs=84.8
Q ss_pred CcEEEEcCCchHHHHHHHHH-HhcccCCCCcceeecCCCcccccCCcccc------ccccCccCccHHHHHHHHHHHHCC
Q 003715 213 AKVFVVGSGALGCEFLKNLA-LMGVSCGNQGKLTITDDDVIEKSNLSRQF------LFRDWNIGQAKSTVAASAAALINP 285 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLa-l~Gv~~~~~g~i~liD~D~Ie~sNLnRQf------lf~~~dIG~~Ka~va~~~l~~~np 285 (800)
++|.|||+|..|+.++-.++ +.|+ .++++|.+. ..+.|-. +-..-.-|+...+.+.+.+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~------~V~l~d~~~---~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---- 376 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL------PVRIKDINP---QGINHALKYSWDLLDKKVKRRHLKPSERDKQMA---- 376 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC------eEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh----
Confidence 57999999999999999999 8898 899998643 2221100 00000001111111111111
Q ss_pred CCeEEEeeccCCcchhcccchhhccCCCEEEEcc-CCHHHHHHHhhhcccccc--cEEEecccCcccc-eEEEeCCcccc
Q 003715 286 HLNTEALQIRANPETENVFNDTFWENLNVVVNAL-DNVNARLYIDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTEN 361 (800)
Q Consensus 286 ~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~-Dn~~ar~~v~~~c~~~~~--pli~sg~~G~~G~-v~~iip~~t~~ 361 (800)
+|+... + + +-+.++|+||.|+ .+.+.++.+-.....+-. .+|.+.|.+..=. ..-.+.+-..+
T Consensus 377 --~i~~~~--------~-~--~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ 443 (708)
T PRK11154 377 --LISGTT--------D-Y--RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQV 443 (708)
T ss_pred --cEEEeC--------C-h--HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccce
Confidence 111111 1 1 2247999999986 566666644443333222 4666666553211 10011111122
Q ss_pred cCCCCCCCCCCCCCccccCCCCCcchhHHHHHhhhhh
Q 003715 362 YGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEG 398 (800)
Q Consensus 362 y~~~~~p~~~~~p~ctl~~fP~~~~h~i~wa~~~F~~ 398 (800)
.+.+--.|....|...+-.-|.+-..++.++..+...
T Consensus 444 ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~ 480 (708)
T PRK11154 444 IGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKK 480 (708)
T ss_pred EEEecCCccccCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 2222222233467888888888888899998887755
No 158
>PRK07831 short chain dehydrogenase; Provisional
Probab=87.79 E-value=1.9 Score=45.49 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=27.4
Q ss_pred HHcCcEEEEcC-C-chHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGS-G-ALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~-G-giG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.+++++|.|+ | |||..+++.|+..|. +++++|
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~------~V~~~~ 49 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGA------RVVISD 49 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCC------EEEEEe
Confidence 44678999996 6 799999999999998 577765
No 159
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.63 E-value=0.49 Score=48.66 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=31.7
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.|++++|+|+|.|.+|..+++.|...|. +++++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~------~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA------KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEcCC
Confidence 3677899999999999999999999997 78888744
No 160
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=87.57 E-value=2 Score=47.44 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=25.2
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcc
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGV 236 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv 236 (800)
|++++|.|||+|.+|..++++|...|+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~ 27 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGL 27 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCC
Confidence 467899999999999999999999997
No 161
>PRK08251 short chain dehydrogenase; Provisional
Probab=87.34 E-value=2.1 Score=44.52 Aligned_cols=62 Identities=16% Similarity=0.287 Sum_probs=42.8
Q ss_pred cCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEE
Q 003715 212 EAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 290 (800)
Q Consensus 212 ~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~ 290 (800)
+++++|.| .||||.++++.|+..|. ++++++.+ ..+...+...+...+|..++.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~------~v~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~ 56 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR------DLALCARR-------------------TDRLEELKAELLARYPGIKVA 56 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC------EEEEEeCC-------------------HHHHHHHHHHHHhhCCCceEE
Confidence 46788998 69999999999999986 67776532 122334455555666776777
Q ss_pred EeeccCCc
Q 003715 291 ALQIRANP 298 (800)
Q Consensus 291 ~~~~~v~~ 298 (800)
.+...+..
T Consensus 57 ~~~~D~~~ 64 (248)
T PRK08251 57 VAALDVND 64 (248)
T ss_pred EEEcCCCC
Confidence 66665553
No 162
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.29 E-value=1.7 Score=49.66 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=30.6
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+.+.+|+|+|+|.+|..+++.+..+|. +++++|.|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga------~ViV~d~d 234 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA------RVIVTEVD 234 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEECC
Confidence 568899999999999999999999998 67777643
No 163
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.22 E-value=2.1 Score=49.26 Aligned_cols=89 Identities=17% Similarity=0.248 Sum_probs=56.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEe
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 292 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~ 292 (800)
++|+|+|+|.+|..+++.|...|. .++++|.|. .+++. +.+ . ..+..+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~------~v~vid~~~-------------------~~~~~----~~~-~--~~~~~~ 48 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN------DVTVIDTDE-------------------ERLRR----LQD-R--LDVRTV 48 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------cEEEEECCH-------------------HHHHH----HHh-h--cCEEEE
Confidence 379999999999999999999997 788887432 11121 211 1 123344
Q ss_pred eccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccc
Q 003715 293 QIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF 335 (800)
Q Consensus 293 ~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~ 335 (800)
...... ...+...-.+++|.||.++++...-..+...++.+
T Consensus 49 ~gd~~~--~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~ 89 (453)
T PRK09496 49 VGNGSS--PDVLREAGAEDADLLIAVTDSDETNMVACQIAKSL 89 (453)
T ss_pred EeCCCC--HHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHh
Confidence 333321 11222223578999999998877776666666654
No 164
>PRK08618 ornithine cyclodeaminase; Validated
Probab=87.18 E-value=1.9 Score=47.67 Aligned_cols=79 Identities=10% Similarity=0.153 Sum_probs=52.5
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHH-HhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 287 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLa-l~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v 287 (800)
+-...+++|||+|+.|...+..++ ..|+ .++.++|.+ ..|++.+++.+.... .+
T Consensus 124 ~~~~~~v~iiGaG~~a~~~~~al~~~~~~-----~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~ 178 (325)
T PRK08618 124 REDAKTLCLIGTGGQAKGQLEAVLAVRDI-----ERVRVYSRT-------------------FEKAYAFAQEIQSKF-NT 178 (325)
T ss_pred CCCCcEEEEECCcHHHHHHHHHHHhcCCc-----cEEEEECCC-------------------HHHHHHHHHHHHHhc-CC
Confidence 335678999999999998888775 4577 788887532 346666777665433 23
Q ss_pred eEEEeeccCCcchhcccchhhccCCCEEEEccCCH
Q 003715 288 NTEALQIRANPETENVFNDTFWENLNVVVNALDNV 322 (800)
Q Consensus 288 ~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~ 322 (800)
++..+.. . .+....+|+|++|+-+.
T Consensus 179 ~~~~~~~-----~-----~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 179 EIYVVNS-----A-----DEAIEEADIIVTVTNAK 203 (325)
T ss_pred cEEEeCC-----H-----HHHHhcCCEEEEccCCC
Confidence 3333321 1 13347899999998654
No 165
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=87.15 E-value=1.7 Score=47.36 Aligned_cols=78 Identities=9% Similarity=0.132 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHhhcccccchhHHHhhhhHHHHHHHhhcCcccccccccccccccc
Q 003715 98 SEEDAQKIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVES 177 (800)
Q Consensus 98 ~~~Da~~l~~i~~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~Pv~AiiGGivaQEVIKait~k~~Pi~q~~~~d~~~~ 177 (800)
+.++.+-+.+.|++-.++.+ .+.++-.+++.++...=--++.+.|++||..+-|++|.+|+...+++||+.|.|-+.
T Consensus 197 ~~~~~~~i~~~a~~ra~~f~---i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~~n~~~~~g~~g 273 (291)
T cd01488 197 DPEHIEWLYQKALERAAQFN---ISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENLNNYLMYNGVDG 273 (291)
T ss_pred CHHHHHHHHHHHHHHHHHcC---CCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCCCceEEEecCCc
Confidence 35555556677777666654 224555667777766666788999999999999999999999999999999998655
Q ss_pred C
Q 003715 178 L 178 (800)
Q Consensus 178 l 178 (800)
+
T Consensus 274 ~ 274 (291)
T cd01488 274 C 274 (291)
T ss_pred e
Confidence 4
No 166
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.15 E-value=2.8 Score=49.83 Aligned_cols=32 Identities=25% Similarity=0.524 Sum_probs=26.0
Q ss_pred HcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 211 EEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 211 ~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
.++.|+|.|+ |+||..+++.|+..|. ++++++
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~------~Vval~ 111 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF------RVRAGV 111 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC------eEEEEe
Confidence 4457888885 9999999999999997 666654
No 167
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=86.95 E-value=0.5 Score=51.81 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=28.5
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
..||+|+|+||+|+-++-.|+++|. .+++++.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~------~V~lv~r 33 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL------PVRLILR 33 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC------CeEEEEe
Confidence 4689999999999999999999996 7888765
No 168
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=86.85 E-value=0.94 Score=45.97 Aligned_cols=109 Identities=19% Similarity=0.161 Sum_probs=61.9
Q ss_pred cEEEEcCCchHHH-HHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHH-HHHHHHHHHHCCCCeEEE
Q 003715 214 KVFVVGSGALGCE-FLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS-TVAASAAALINPHLNTEA 291 (800)
Q Consensus 214 ~VlIvG~GgiG~e-vlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka-~va~~~l~~~np~v~i~~ 291 (800)
||.|||+|+.-.. .+..+.+. ...-+.++|.|+|-|. .|. ..+ ..+.+.+++.+++++|+.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~-~~~l~~~ei~L~Did~------~RL----------~~~~~~~~~~~~~~~~~~~v~~ 63 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLR-TEELSGSEIVLMDIDE------ERL----------EIVERLARRMVEEAGADLKVEA 63 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHC-TTTSTEEEEEEE-SCH------HHH----------HHHHHHHHHHHHHCTTSSEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhc-CccCCCcEEEEEcCCH------HHH----------HHHHHHHHHHHHhcCCCeEEEE
Confidence 6899999988754 33333332 1112236899998554 221 112 234445556678888877
Q ss_pred eeccCCcchhcccchhhccCCCEEEEcc--CCHHHHHHHhhhcccccccEEEecccCccc
Q 003715 292 LQIRANPETENVFNDTFWENLNVVVNAL--DNVNARLYIDQRCLYFQKPLLESGTLGAKC 349 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~--Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G 349 (800)
..++ .+-++++|+||++. ...++|..=.+.+.++|+.--..-|.|..|
T Consensus 64 ttd~----------~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG 113 (183)
T PF02056_consen 64 TTDR----------REALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGG 113 (183)
T ss_dssp ESSH----------HHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHH
T ss_pred eCCH----------HHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccH
Confidence 6532 23468999999986 344556655567777776554445555554
No 169
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.79 E-value=2.1 Score=49.30 Aligned_cols=94 Identities=14% Similarity=0.197 Sum_probs=58.9
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeE
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 289 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i 289 (800)
+...+|+|+|+|.+|..+++.|...|. .++++|.|. .+. +.+.+..+++.
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~------~v~vid~~~-------------------~~~----~~~~~~~~~~~- 278 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY------SVKLIERDP-------------------ERA----EELAEELPNTL- 278 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC------eEEEEECCH-------------------HHH----HHHHHHCCCCe-
Confidence 346889999999999999999999897 788887442 111 12222223332
Q ss_pred EEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhccccc
Q 003715 290 EALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQ 336 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~ 336 (800)
.+...... ...+...-.+++|.||.++++......+...|+.++
T Consensus 279 -~i~gd~~~--~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~ 322 (453)
T PRK09496 279 -VLHGDGTD--QELLEEEGIDEADAFIALTNDDEANILSSLLAKRLG 322 (453)
T ss_pred -EEECCCCC--HHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhC
Confidence 23332221 112222345789999999988776666655565544
No 170
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=86.78 E-value=3.2 Score=45.95 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=25.4
Q ss_pred CcEEEEcC-CchHHHHHHHHHHh-cccCCCCcceeecCC
Q 003715 213 AKVFVVGS-GALGCEFLKNLALM-GVSCGNQGKLTITDD 249 (800)
Q Consensus 213 ~~VlIvG~-GgiG~evlknLal~-Gv~~~~~g~i~liD~ 249 (800)
++|+|.|+ |-||+.+++.|... |. +++.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~------~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDW------EVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCC------eEEEEeC
Confidence 47999996 99999999999876 45 6777763
No 171
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=86.41 E-value=2.8 Score=46.09 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHhc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMG 235 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~G 235 (800)
.||+|+|+|++||.++-.|++.|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 48999999999999999999999
No 172
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=86.37 E-value=0.78 Score=55.38 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=61.4
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEE
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 291 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~ 291 (800)
..+|+|+|+|.+|..+++.|...|+ .++++|.|.- +++.+ ++. + ...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~------~vvvID~d~~-------------------~v~~~----~~~--g--~~v 446 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV------KMTVLDHDPD-------------------HIETL----RKF--G--MKV 446 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC------CEEEEECCHH-------------------HHHHH----Hhc--C--CeE
Confidence 4689999999999999999999998 8999987652 22222 221 2 233
Q ss_pred eeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccc
Q 003715 292 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF 335 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~ 335 (800)
+..+.+. .+.+...-.+++++||.++|+.+....+-..++.+
T Consensus 447 ~~GDat~--~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~ 488 (621)
T PRK03562 447 FYGDATR--MDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEH 488 (621)
T ss_pred EEEeCCC--HHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 4443332 12222334568999999999998888777776655
No 173
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.30 E-value=3 Score=43.72 Aligned_cols=25 Identities=12% Similarity=0.371 Sum_probs=22.5
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcc
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGV 236 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv 236 (800)
..||.|||+|.+|..+++.|+..|.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~ 28 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSK 28 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCC
Confidence 5689999999999999999998873
No 174
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=86.19 E-value=0.55 Score=49.90 Aligned_cols=41 Identities=22% Similarity=0.514 Sum_probs=35.1
Q ss_pred cccccchhHHHhhhhHHHHHHHhhcCcccccc-ccccccccc
Q 003715 136 ARAVLNPMAAMFGGIVGQEVVKACSGKFHPLL-QFFYFDSVE 176 (800)
Q Consensus 136 ~~~el~Pv~AiiGGivaQEVIKait~k~~Pi~-q~~~~d~~~ 176 (800)
..+-+.|+.+++|++.|+|+||.++|...|+. ..++||..+
T Consensus 190 ~~gv~~~~~~~~~~~~a~e~ik~l~g~~~~l~g~l~~~d~~~ 231 (245)
T PRK05690 190 EAGVMAPLVGVIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMT 231 (245)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCC
Confidence 35679999999999999999999999988885 566788753
No 175
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=86.16 E-value=2 Score=39.39 Aligned_cols=85 Identities=21% Similarity=0.234 Sum_probs=54.8
Q ss_pred EEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEeec
Q 003715 215 VFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQI 294 (800)
Q Consensus 215 VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~~ 294 (800)
|+|+|+|.+|-++++.|...|. .++++|.|.- + .+.+.+.. +..+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~------~vvvid~d~~-------------------~----~~~~~~~~----~~~i~g 47 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI------DVVVIDRDPE-------------------R----VEELREEG----VEVIYG 47 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS------EEEEEESSHH-------------------H----HHHHHHTT----SEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCCC------EEEEEECCcH-------------------H----HHHHHhcc----cccccc
Confidence 6899999999999999999664 8899985531 1 22222222 223444
Q ss_pred cCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhccc
Q 003715 295 RANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLY 334 (800)
Q Consensus 295 ~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~ 334 (800)
.... ...+...-+++++.|+.++++......+...++.
T Consensus 48 d~~~--~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~ 85 (116)
T PF02254_consen 48 DATD--PEVLERAGIEKADAVVILTDDDEENLLIALLARE 85 (116)
T ss_dssp -TTS--HHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHH
T ss_pred cchh--hhHHhhcCccccCEEEEccCCHHHHHHHHHHHHH
Confidence 3332 2223334467899999999988887777766665
No 176
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=86.15 E-value=4.3 Score=40.12 Aligned_cols=86 Identities=22% Similarity=0.245 Sum_probs=52.3
Q ss_pred EEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEee
Q 003715 215 VFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 293 (800)
Q Consensus 215 VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~ 293 (800)
|+|+|+ |.+|..+++.|...|. +++++ .|. ..|.+. .++ ++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~------~V~~~---------------~R~----~~~~~~--------~~~--~~~~~ 45 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH------EVTAL---------------VRS----PSKAED--------SPG--VEIIQ 45 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS------EEEEE---------------ESS----GGGHHH--------CTT--EEEEE
T ss_pred eEEECCCChHHHHHHHHHHHCCC------EEEEE---------------ecC----chhccc--------ccc--cccce
Confidence 789997 9999999999999996 66663 122 122222 444 45555
Q ss_pred ccCCcchhcccchhhccCCCEEEEccCC----HHHHHHHhhhccccccc
Q 003715 294 IRANPETENVFNDTFWENLNVVVNALDN----VNARLYIDQRCLYFQKP 338 (800)
Q Consensus 294 ~~v~~~~~~~~~~~f~~~~dvVi~a~Dn----~~ar~~v~~~c~~~~~p 338 (800)
..+.+. +.+ ...+.++|.|+.++.. ...-..+-+.|...+++
T Consensus 46 ~d~~d~-~~~--~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~ 91 (183)
T PF13460_consen 46 GDLFDP-DSV--KAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVK 91 (183)
T ss_dssp SCTTCH-HHH--HHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSS
T ss_pred eeehhh-hhh--hhhhhhcchhhhhhhhhcccccccccccccccccccc
Confidence 544432 111 2345799999999852 22223444556555654
No 177
>PRK06141 ornithine cyclodeaminase; Validated
Probab=85.97 E-value=1.3 Score=48.88 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=53.5
Q ss_pred HHHHHcCcEEEEcCCchHHHHHHHHHH-hcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCC
Q 003715 207 QKKLEEAKVFVVGSGALGCEFLKNLAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINP 285 (800)
Q Consensus 207 q~~L~~~~VlIvG~GgiG~evlknLal-~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np 285 (800)
..+....+|+|+|+|+.|..+++.+.+ .|+ .+|++.+ ....|++.+++.+.+..
T Consensus 120 La~~~~~~v~iiG~G~~a~~~~~al~~~~~~-----~~V~V~~-------------------Rs~~~a~~~a~~~~~~g- 174 (314)
T PRK06141 120 LARKDASRLLVVGTGRLASLLALAHASVRPI-----KQVRVWG-------------------RDPAKAEALAAELRAQG- 174 (314)
T ss_pred hCCCCCceEEEECCcHHHHHHHHHHHhcCCC-----CEEEEEc-------------------CCHHHHHHHHHHHHhcC-
Confidence 334457899999999999999987766 576 6888874 23467777777776532
Q ss_pred CCeEEEeeccCCcchhcccchhhccCCCEEEEccCC
Q 003715 286 HLNTEALQIRANPETENVFNDTFWENLNVVVNALDN 321 (800)
Q Consensus 286 ~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn 321 (800)
..+.+.. +. .+...++|+|++|+..
T Consensus 175 -~~~~~~~-----~~-----~~av~~aDIVi~aT~s 199 (314)
T PRK06141 175 -FDAEVVT-----DL-----EAAVRQADIISCATLS 199 (314)
T ss_pred -CceEEeC-----CH-----HHHHhcCCEEEEeeCC
Confidence 2233221 11 1345789999999874
No 178
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=85.92 E-value=2.3 Score=49.16 Aligned_cols=110 Identities=13% Similarity=0.044 Sum_probs=69.9
Q ss_pred CcEEEEcCCchH-HHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEE
Q 003715 213 AKVFVVGSGALG-CEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 291 (800)
Q Consensus 213 ~~VlIvG~GgiG-~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~ 291 (800)
.||.|||+|+.= .++++.|+..-- .-+.++|+|+|-|. ..|.+ + ...+.+.+.+.+++++|++
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~-~l~~~ei~L~DId~---~rl~~--------v----~~l~~~~~~~~g~~~~v~~ 64 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKE-DFPLRELVLYDIDA---ERQEK--------V----AEAVKILFKENYPEIKFVY 64 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcc-cCCCCEEEEECCCH---HHHHH--------H----HHHHHHHHHhhCCCeEEEE
Confidence 379999999852 356666654410 01238999998443 33322 1 1234444556667777777
Q ss_pred eeccCCcchhcccchhhccCCCEEEEcc--CCHHHHHHHhhhcccccccEEEecccCcccc
Q 003715 292 LQIRANPETENVFNDTFWENLNVVVNAL--DNVNARLYIDQRCLYFQKPLLESGTLGAKCN 350 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~--Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~ 350 (800)
...+ .+-++++|+||++. ...++|..-.+.+.+||+ +-.-|.|..|-
T Consensus 65 Ttdr----------~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG~ 113 (437)
T cd05298 65 TTDP----------EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGGF 113 (437)
T ss_pred ECCH----------HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHHH
Confidence 6432 24468999999875 556788877788899996 54467777774
No 179
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=85.81 E-value=1.9 Score=49.59 Aligned_cols=111 Identities=17% Similarity=0.104 Sum_probs=66.5
Q ss_pred CcEEEEcCCchHH-HHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEE
Q 003715 213 AKVFVVGSGALGC-EFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 291 (800)
Q Consensus 213 ~~VlIvG~GgiG~-evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~ 291 (800)
.||.|||+|+.-+ ++++.|+...- ..+.++|+++|-|. ...|+. =...+.+.+.+.++.++++.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~-~l~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~ 65 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYE-ELPVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHL 65 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccc-cCCCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEE
Confidence 3799999999765 67777776211 01228999998663 333322 02234555666677777776
Q ss_pred eeccCCcchhcccchhhccCCCEEEEccC--CHHHHHHHhhhcccccccEEEecccCcccc
Q 003715 292 LQIRANPETENVFNDTFWENLNVVVNALD--NVNARLYIDQRCLYFQKPLLESGTLGAKCN 350 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~D--n~~ar~~v~~~c~~~~~pli~sg~~G~~G~ 350 (800)
..+. .+-++++|+||++.- ..++|..-.+...++|+- -.-|.|..|-
T Consensus 66 t~d~----------~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~--gqET~G~GG~ 114 (419)
T cd05296 66 TTDR----------REALEGADFVFTQIRVGGLEARALDERIPLKHGVI--GQETTGAGGF 114 (419)
T ss_pred eCCH----------HHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCc--cccCCCcchH
Confidence 5432 234678999998753 334555555555666543 2456666663
No 180
>PRK09186 flagellin modification protein A; Provisional
Probab=85.77 E-value=2.3 Score=44.40 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=27.4
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.+++|+|.|+ |+||.++++.|+..|. ++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~------~v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG------IVIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEe
Confidence 35678999985 8999999999999997 666664
No 181
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=85.76 E-value=2.3 Score=47.15 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=52.1
Q ss_pred HcCcEEEEcCCchHHHHHHHHH-HhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeE
Q 003715 211 EEAKVFVVGSGALGCEFLKNLA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 289 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLa-l~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i 289 (800)
..++++|+|+|+.|...++.|+ ..|+ .+++|.+. ...|++.+++.+.+..+ +++
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i-----~~v~V~~R-------------------~~~~a~~~a~~~~~~~g-~~v 182 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDI-----RSARIWAR-------------------DSAKAEALALQLSSLLG-IDV 182 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCc-----cEEEEECC-------------------CHHHHHHHHHHHHhhcC-ceE
Confidence 3468999999999999999997 4677 78888742 23577777777764332 334
Q ss_pred EEeeccCCcchhcccchhhccCCCEEEEccCC
Q 003715 290 EALQIRANPETENVFNDTFWENLNVVVNALDN 321 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn 321 (800)
..... - .+.+..+|+|++|+-.
T Consensus 183 ~~~~~-----~-----~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 183 TAATD-----P-----RAAMSGADIIVTTTPS 204 (326)
T ss_pred EEeCC-----H-----HHHhccCCEEEEecCC
Confidence 33211 1 2345789999999854
No 182
>PRK08328 hypothetical protein; Provisional
Probab=85.72 E-value=0.59 Score=49.20 Aligned_cols=40 Identities=30% Similarity=0.409 Sum_probs=33.8
Q ss_pred ccccchhHHHhhhhHHHHHHHhhcCcccccccc-ccccccc
Q 003715 137 RAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQF-FYFDSVE 176 (800)
Q Consensus 137 ~~el~Pv~AiiGGivaQEVIKait~k~~Pi~q~-~~~d~~~ 176 (800)
.+-+.|+.+++|++.|+|+||.++|...|+.+. +.||..+
T Consensus 183 ~~~~~~~~~ii~~~~a~e~~k~l~g~~~~~~~~l~~~d~~~ 223 (231)
T PRK08328 183 FPILGATAGVIGSIQAMEVIKLITGYGEPLLNKLLIVDLAN 223 (231)
T ss_pred CCcCchHHHHHHHHHHHHHHHHHhCCCCcccCeEEEEECCC
Confidence 346899999999999999999999998898655 5688643
No 183
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=85.72 E-value=1.8 Score=45.06 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=28.6
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
|++++|+|.|+ |+||..+++.|+..|. ++++++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~------~vi~~~ 36 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA------DIVGAG 36 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEc
Confidence 56788999996 8999999999999997 677765
No 184
>PTZ00117 malate dehydrogenase; Provisional
Probab=85.69 E-value=0.66 Score=51.27 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=30.8
Q ss_pred HcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 211 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.+.||.|||+|.+|..++-.|++.|+ ..|.|+|-
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~-----~~l~L~Di 37 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL-----GDVVLYDV 37 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC-----CeEEEEEC
Confidence 46799999999999999999999998 68999984
No 185
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.65 E-value=1.3 Score=48.22 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=30.6
Q ss_pred HHHcCcEEEEcCCc-hHHHHHHHHHHhcccCCCCcceeecC
Q 003715 209 KLEEAKVFVVGSGA-LGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlIvG~Gg-iG~evlknLal~Gv~~~~~g~i~liD 248 (800)
.|++++|+|||.|. +|..+++.|...|. ++++++
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga------tVtv~~ 189 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA------SVTILH 189 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC------eEEEEe
Confidence 48899999999999 99999999999986 788775
No 186
>PRK07576 short chain dehydrogenase; Provisional
Probab=85.45 E-value=1.4 Score=46.74 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=30.4
Q ss_pred HHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 209 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 209 ~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
++.+++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~------~V~~~~r~ 42 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGA------NVAVASRS 42 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 567889999986 8999999999999987 67787643
No 187
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=85.44 E-value=2.5 Score=43.76 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=29.2
Q ss_pred HHcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 210 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+++++|+|.| +|++|..+++.|+..|. ++++++.+
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~------~V~~~~r~ 39 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA------EVIVVDIC 39 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC------EEEEEeCC
Confidence 4567899998 69999999999999997 67777644
No 188
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=85.38 E-value=0.83 Score=56.18 Aligned_cols=159 Identities=14% Similarity=0.128 Sum_probs=80.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccc------cccccCccCccHHHHHHHHHHHHCCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQ------FLFRDWNIGQAKSTVAASAAALINPH 286 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQ------flf~~~dIG~~Ka~va~~~l~~~np~ 286 (800)
.+|.|||+|-.|+.++-.++..|+ .++++|.+. ..+.|- .+-..-.-|+...+...+.+.+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~------~V~l~d~~~---~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~---- 402 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL------KTVLKDATP---AGLDRGQQQVFKGLNKKVKRKKITSLERDSILSN---- 402 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC------cEEEecCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC----
Confidence 469999999999999999999999 899998553 222110 0000000111111111111111
Q ss_pred CeEEEeeccCCcchhcccchhhccCCCEEEEcc-CCHHHHHHHhhhcccccc--cEEEecccCcccc-eEEEeCCccccc
Q 003715 287 LNTEALQIRANPETENVFNDTFWENLNVVVNAL-DNVNARLYIDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENY 362 (800)
Q Consensus 287 v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~-Dn~~ar~~v~~~c~~~~~--pli~sg~~G~~G~-v~~iip~~t~~y 362 (800)
|+.. ++ + +-+.++|+||.|+ .+.+.++.+-...-..-. .++.+.|.+..-. +.-.+.+-..+.
T Consensus 403 --i~~~-------~~--~--~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~i 469 (737)
T TIGR02441 403 --LTPT-------LD--Y--SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVI 469 (737)
T ss_pred --eEEe-------CC--H--HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceE
Confidence 1111 10 1 2257999999886 566666544333322222 2555555543211 000011111111
Q ss_pred CCC-CCCCCCCCCCccccCCCCCcchhHHHHHhhhhh
Q 003715 363 GAS-RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEG 398 (800)
Q Consensus 363 ~~~-~~p~~~~~p~ctl~~fP~~~~h~i~wa~~~F~~ 398 (800)
+-+ -.|+ .-.|...+-.-|.+-..++..+.+++..
T Consensus 470 g~Hff~P~-~~m~LvEvv~g~~Ts~~~~~~~~~~~~~ 505 (737)
T TIGR02441 470 GMHYFSPV-DKMQLLEIITHDGTSKDTLASAVAVGLK 505 (737)
T ss_pred EEeccCCc-ccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 111 1222 2356677777788888888888886654
No 189
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=85.38 E-value=2.4 Score=40.52 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=22.3
Q ss_pred HcCcEEEEcCCchHHHHHHHHHHhcc
Q 003715 211 EEAKVFVVGSGALGCEFLKNLALMGV 236 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal~Gv 236 (800)
...||.|||+|-+|..+++.|...|.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~ 34 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH 34 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC
Confidence 45689999999999999999999997
No 190
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.36 E-value=2.5 Score=44.97 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=21.5
Q ss_pred cEEEEcCCchHHHHHHHHHHhcc
Q 003715 214 KVFVVGSGALGCEFLKNLALMGV 236 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv 236 (800)
+|.|||+|.+|..+++.|...|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~ 24 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA 24 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC
Confidence 69999999999999999998885
No 191
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=85.30 E-value=0.83 Score=55.90 Aligned_cols=166 Identities=13% Similarity=0.163 Sum_probs=84.7
Q ss_pred CcEEEEcCCchHHHHHHHHH-HhcccCCCCcceeecCCCcccccCCcccc--c----cccCccCccHHHHHHHHHHHHCC
Q 003715 213 AKVFVVGSGALGCEFLKNLA-LMGVSCGNQGKLTITDDDVIEKSNLSRQF--L----FRDWNIGQAKSTVAASAAALINP 285 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLa-l~Gv~~~~~g~i~liD~D~Ie~sNLnRQf--l----f~~~dIG~~Ka~va~~~l~~~np 285 (800)
.+|.|||+|.+|+.++-.++ ..|+ .++++|.+. .-+.|-. . -+...-|+.......+.+.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~------~V~l~d~~~---~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---- 371 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI------PVRIKDINP---QGINNALKYAWKLLDKGVKRRHMTPAERDNQMA---- 371 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC------eEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHc----
Confidence 47999999999999999998 4898 899998652 1121100 0 0000001100000011110
Q ss_pred CCeEEEeeccCCcchhcccchhhccCCCEEEEcc-CCHHHHHHHhhhcccccc--cEEEecccCcccc-eEEEeCCcccc
Q 003715 286 HLNTEALQIRANPETENVFNDTFWENLNVVVNAL-DNVNARLYIDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTEN 361 (800)
Q Consensus 286 ~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~-Dn~~ar~~v~~~c~~~~~--pli~sg~~G~~G~-v~~iip~~t~~ 361 (800)
+|+.. +. + +-++++|+||.|+ .+.+.++.+-.....+-. .+|.+.|.+..=. ..-...+-..+
T Consensus 372 --~i~~~-------~~--~--~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ 438 (699)
T TIGR02440 372 --LITGT-------TD--Y--RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENV 438 (699)
T ss_pred --CeEEe-------CC--h--HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccE
Confidence 11111 10 1 2257999999986 456666543333322222 3565665553211 00011111112
Q ss_pred cCCCCCCCCCCCCCccccCCCCCcchhHHHHHhhhhhhhccChh
Q 003715 362 YGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPA 405 (800)
Q Consensus 362 y~~~~~p~~~~~p~ctl~~fP~~~~h~i~wa~~~F~~~F~~~~~ 405 (800)
.+.+.--|....|...+-.-|.+-..+++++.+++.. .+..|-
T Consensus 439 ~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~-~gk~pv 481 (699)
T TIGR02440 439 IGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKK-QGKTPI 481 (699)
T ss_pred EEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHH-cCCeEE
Confidence 2222111223457788888888889999999887665 454443
No 192
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=85.29 E-value=2.1 Score=45.72 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=28.0
Q ss_pred HcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 211 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.+.+|.|||+|.+|+.+++.|...|... ..++.+.|.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~--~~~i~~~~~ 38 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIG--KENIYYHTP 38 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCC--cceEEEECC
Confidence 3468999999999999999999988521 124666654
No 193
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=85.24 E-value=1.3 Score=50.64 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=31.7
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.|.+++|.|||.|.||..+|+.+...|+ ++...|.
T Consensus 148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm------~V~~~d~ 182 (409)
T PRK11790 148 EVRGKTLGIVGYGHIGTQLSVLAESLGM------RVYFYDI 182 (409)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5889999999999999999999998888 7888774
No 194
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=85.19 E-value=0.53 Score=51.16 Aligned_cols=41 Identities=34% Similarity=0.555 Sum_probs=31.5
Q ss_pred EEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccc
Q 003715 215 VFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQ 260 (800)
Q Consensus 215 VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQ 260 (800)
|+|.| +|+||+|+++.|+..|. .+|+++|.|.-...++.+.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-----~~lil~d~~E~~l~~l~~~ 42 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-----KKLILFDRDENKLYELERE 42 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB------SEEEEEES-HHHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCC-----CeEEEeCCChhHHHHHHHH
Confidence 67887 68999999999999999 8999998776555555444
No 195
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=85.12 E-value=0.65 Score=49.20 Aligned_cols=41 Identities=22% Similarity=0.463 Sum_probs=34.6
Q ss_pred cccccchhHHHhhhhHHHHHHHhhcCcccccc-ccccccccc
Q 003715 136 ARAVLNPMAAMFGGIVGQEVVKACSGKFHPLL-QFFYFDSVE 176 (800)
Q Consensus 136 ~~~el~Pv~AiiGGivaQEVIKait~k~~Pi~-q~~~~d~~~ 176 (800)
..+-+.|+.+++|++.|+|+||.++|.-.|+. ..++||..+
T Consensus 182 ~~gv~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~~ 223 (240)
T TIGR02355 182 EAGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMT 223 (240)
T ss_pred ccCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCC
Confidence 34679999999999999999999999888884 566788653
No 196
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=85.05 E-value=0.72 Score=52.85 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=30.4
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
..+|+|||+|-+||+.|-.|++.|+ +++|+|+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl------~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV------PVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC------cEEEEEccC
Confidence 3579999999999999999999999 899998643
No 197
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=85.04 E-value=0.72 Score=52.91 Aligned_cols=36 Identities=33% Similarity=0.579 Sum_probs=32.2
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.+.+.+|+|+|+|.+|..+++.|...|+ .+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~-----~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGV-----GKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCC-----CEEEEEeC
Confidence 3778999999999999999999999998 78888753
No 198
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=85.03 E-value=1.4 Score=48.85 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=28.0
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHH-HhcccCCCCcceeecC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLA-LMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLa-l~Gv~~~~~g~i~liD 248 (800)
.|.+++|.|||.|.||.++++.|. ..|+ ++...|
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm------~V~~~~ 176 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNM------PILYNA 176 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCC------EEEEEC
Confidence 589999999999999999999986 4555 555554
No 199
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=84.94 E-value=0.83 Score=50.54 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=25.8
Q ss_pred HHHHHcCcEEEEcCCchHHHHHHHHHHhc
Q 003715 207 QKKLEEAKVFVVGSGALGCEFLKNLALMG 235 (800)
Q Consensus 207 q~~L~~~~VlIvG~GgiG~evlknLal~G 235 (800)
-..+++++|.|+|+|+||.++|+.|...|
T Consensus 157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg 185 (336)
T KOG0069|consen 157 GYDLEGKTVGILGLGRIGKAIAKRLKPFG 185 (336)
T ss_pred cccccCCEEEEecCcHHHHHHHHhhhhcc
Confidence 35788999999999999999999998844
No 200
>PLN02206 UDP-glucuronate decarboxylase
Probab=84.89 E-value=2.1 Score=49.51 Aligned_cols=33 Identities=24% Similarity=0.503 Sum_probs=28.1
Q ss_pred HcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 211 EEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 211 ~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+++||+|.| +|-||+.+++.|...|. +++++|.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~------~V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD------SVIVVDN 151 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC------EEEEEeC
Confidence 457899999 59999999999999997 6777764
No 201
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=84.49 E-value=1.1 Score=54.94 Aligned_cols=161 Identities=14% Similarity=0.144 Sum_probs=79.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccC----CccccccccCccCccHHHHHHHHHHHHCCCCe
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSN----LSRQFLFRDWNIGQAKSTVAASAAALINPHLN 288 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sN----LnRQflf~~~dIG~~Ka~va~~~l~~~np~v~ 288 (800)
.+|.|||+|..|+.++..++..|+ .++++|.+.=.... +.+. +-..-+-|+...+.+.+.+.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~------~V~l~d~~~~~l~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~------ 380 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT------PIVMKDINQHSLDLGLTEAAKL-LNKQVERGRITPAKMAGVLNG------ 380 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC------eEEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCChhhHHHHHhC------
Confidence 469999999999999999999999 89999865322111 0000 000001122111111222211
Q ss_pred EEEeeccCCcchhcccchhhccCCCEEEEcc-CCHHHHHHHhhhcccccc--cEEEecccCcccc-eEEEeCCcccccCC
Q 003715 289 TEALQIRANPETENVFNDTFWENLNVVVNAL-DNVNARLYIDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGA 364 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~-Dn~~ar~~v~~~c~~~~~--pli~sg~~G~~G~-v~~iip~~t~~y~~ 364 (800)
|+.. + + .+-+.++|+||.|+ .+.+.++.+-...-..-. .++.+.|.+..-. +.-..++-..+.+-
T Consensus 381 i~~~-------~-~---~~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~ 449 (714)
T TIGR02437 381 ITPT-------L-S---YAGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGM 449 (714)
T ss_pred eEEe-------C-C---HHHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEE
Confidence 1111 1 0 12257999999986 455666544333322222 3565555543211 00001111111111
Q ss_pred C-CCCCCCCCCCccccCCCCCcchhHHHHHhhhhh
Q 003715 365 S-RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEG 398 (800)
Q Consensus 365 ~-~~p~~~~~p~ctl~~fP~~~~h~i~wa~~~F~~ 398 (800)
+ -.|+ .-.|.-.+-.-+.+-..++..+.++...
T Consensus 450 Hff~P~-~~~~lvEvv~g~~Ts~~~~~~~~~~~~~ 483 (714)
T TIGR02437 450 HFFNPV-HRMPLVEVIRGEKSSDETIATVVAYASK 483 (714)
T ss_pred ecCCCc-ccCceEeecCCCCCCHHHHHHHHHHHHH
Confidence 1 1222 2345556666677777888888886654
No 202
>PRK05867 short chain dehydrogenase; Provisional
Probab=84.37 E-value=2 Score=45.02 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=28.2
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.+++++|.|+ ||||.++++.|+..|. ++.+++
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~------~V~~~~ 40 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA------QVAIAA 40 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEc
Confidence 56778999996 8999999999999997 677765
No 203
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.07 E-value=2.3 Score=44.21 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=28.6
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.+.+++|.|+ |+||..+++.|+..|. +++++|
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~------~vi~~~ 36 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA------KLALID 36 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEe
Confidence 56778999996 9999999999999987 677776
No 204
>PRK14982 acyl-ACP reductase; Provisional
Probab=84.01 E-value=0.86 Score=50.74 Aligned_cols=36 Identities=33% Similarity=0.519 Sum_probs=31.0
Q ss_pred HHHcCcEEEEcC-CchHHHHHHHHHH-hcccCCCCcceeecCC
Q 003715 209 KLEEAKVFVVGS-GALGCEFLKNLAL-MGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlIvG~-GgiG~evlknLal-~Gv~~~~~g~i~liD~ 249 (800)
.|++++|+|+|+ |.+|+++++.|+. .|+ .++++++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv-----~~lilv~R 189 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGV-----AELLLVAR 189 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCC-----CEEEEEcC
Confidence 578899999998 8999999999985 477 78888753
No 205
>PRK07340 ornithine cyclodeaminase; Validated
Probab=83.93 E-value=1.6 Score=47.82 Aligned_cols=76 Identities=17% Similarity=0.279 Sum_probs=52.7
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHH-hcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 287 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal-~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v 287 (800)
+....+++|+|+|+.|...++.+.. .|+ .++.+.| ....|++.+++.+...+.
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~-----~~v~v~~-------------------r~~~~a~~~a~~~~~~~~-- 175 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPV-----RRVWVRG-------------------RTAASAAAFCAHARALGP-- 175 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-----CEEEEEc-------------------CCHHHHHHHHHHHHhcCC--
Confidence 4456889999999999999999975 576 6788864 234677888887765432
Q ss_pred eEEEeeccCCcchhcccchhhccCCCEEEEccCC
Q 003715 288 NTEALQIRANPETENVFNDTFWENLNVVVNALDN 321 (800)
Q Consensus 288 ~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn 321 (800)
.+. . . +. .+...++|+|++|+-+
T Consensus 176 ~~~-~----~-~~-----~~av~~aDiVitaT~s 198 (304)
T PRK07340 176 TAE-P----L-DG-----EAIPEAVDLVVTATTS 198 (304)
T ss_pred eeE-E----C-CH-----HHHhhcCCEEEEccCC
Confidence 222 1 1 11 2345799999999854
No 206
>PRK07478 short chain dehydrogenase; Provisional
Probab=83.91 E-value=2.3 Score=44.55 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=27.7
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.+++++|.|+ ||||.++++.|+..|. ++.+++
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~------~v~~~~ 37 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA------KVVVGA 37 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEe
Confidence 45678999985 8999999999999997 677765
No 207
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=83.91 E-value=1.5 Score=42.58 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=40.2
Q ss_pred cEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEe
Q 003715 214 KVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 292 (800)
Q Consensus 214 ~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~ 292 (800)
.|+|+| +||||-++++.|+..|- .++.+++.+ .-..+.+.+++.+...+ .++..+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~-----~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~~ 57 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGA-----RVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITFI 57 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTT-----EEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCc-----eEEEEeeec-----------------ccccccccccccccccc--cccccc
Confidence 578888 69999999999999986 677776533 11234444455555333 567776
Q ss_pred eccCC
Q 003715 293 QIRAN 297 (800)
Q Consensus 293 ~~~v~ 297 (800)
...+.
T Consensus 58 ~~D~~ 62 (167)
T PF00106_consen 58 ECDLS 62 (167)
T ss_dssp ESETT
T ss_pred ccccc
Confidence 65554
No 208
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=83.86 E-value=0.96 Score=48.99 Aligned_cols=31 Identities=32% Similarity=0.507 Sum_probs=27.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.+|+|+|+|++|+.++..|+..|. +++++|.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~------~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH------DVTLVAR 31 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------eEEEEEC
Confidence 379999999999999999999986 7888874
No 209
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=83.60 E-value=4.8 Score=45.02 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=57.6
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEee
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 293 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~ 293 (800)
+|+|+|+|.||.-.+..+.+.|. ..|+++|.+. .|.+.|++. ... .+....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga-----~~Viv~d~~~-------------------~Rl~~A~~~----~g~-~~~~~~ 221 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA-----SVVIVVDRSP-------------------ERLELAKEA----GGA-DVVVNP 221 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC-----ceEEEeCCCH-------------------HHHHHHHHh----CCC-eEeecC
Confidence 89999999999999999999999 8999987432 233333331 111 111100
Q ss_pred ccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEE
Q 003715 294 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLL 340 (800)
Q Consensus 294 ~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli 340 (800)
.. ......+....--..+|+||+|+.+..+.....+.++..+.-.+
T Consensus 222 ~~-~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 222 SE-DDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVV 267 (350)
T ss_pred cc-ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 00 00001111000013699999999988877777777776665333
No 210
>PLN02253 xanthoxin dehydrogenase
Probab=83.55 E-value=3 Score=44.48 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=28.7
Q ss_pred HHHcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 209 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
.+.+++++|.| +||||.++++.|+..|. +++++|
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~------~v~~~~ 49 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA------KVCIVD 49 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC------EEEEEe
Confidence 35677899998 58999999999999997 777776
No 211
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.54 E-value=1.8 Score=46.82 Aligned_cols=92 Identities=20% Similarity=0.280 Sum_probs=59.3
Q ss_pred CHHHHHHHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHH
Q 003715 203 GSKLQKKLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAA 281 (800)
Q Consensus 203 G~~~q~~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~ 281 (800)
+....+++.++.|+|-|| .|||-++|+.|+..|. ++.++- + -..+-+..++.++
T Consensus 3 ~~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~------~l~lva---------------r----~~rrl~~v~~~l~ 57 (282)
T KOG1205|consen 3 GNLFMERLAGKVVLITGASSGIGEALAYELAKRGA------KLVLVA---------------R----RARRLERVAEELR 57 (282)
T ss_pred ccccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCC------ceEEee---------------h----hhhhHHHHHHHHH
Confidence 344567899999999996 7999999999999998 444431 0 1123445555666
Q ss_pred HHCCCCeEEEeeccCCcchhc--ccc--hhhccCCCEEEEcc
Q 003715 282 LINPHLNTEALQIRANPETEN--VFN--DTFWENLNVVVNAL 319 (800)
Q Consensus 282 ~~np~v~i~~~~~~v~~~~~~--~~~--~~f~~~~dvVi~a~ 319 (800)
+..|.-++..+...++..... .++ ..-+.+.|+.||-.
T Consensus 58 ~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNNA 99 (282)
T KOG1205|consen 58 KLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNNA 99 (282)
T ss_pred HhCCcCccEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEecC
Confidence 555433677777777654421 111 12356888887653
No 212
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=83.46 E-value=0.96 Score=50.25 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=32.0
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.|++++|.|||+|.+|..+++.|...|. +++..|..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~------~V~~~d~~ 178 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGA------TITAYDAY 178 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEeCC
Confidence 5888999999999999999999999887 78888743
No 213
>PRK05875 short chain dehydrogenase; Provisional
Probab=83.37 E-value=3.6 Score=43.63 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=28.6
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.+++++|.|+ |+||.++++.|+..|. ++++++
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~------~V~~~~ 38 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA------AVMIVG 38 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC------eEEEEe
Confidence 56789999996 8999999999999997 677765
No 214
>PLN02306 hydroxypyruvate reductase
Probab=83.37 E-value=1.4 Score=50.12 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=30.2
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHH-HhcccCCCCcceeecCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLA-LMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLa-l~Gv~~~~~g~i~liD~ 249 (800)
.|.+++|.|||.|.||+++++.|. ..|+ ++...|.
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm------~V~~~d~ 197 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM------NLIYYDL 197 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCC------EEEEECC
Confidence 588999999999999999999985 6677 7777774
No 215
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=83.36 E-value=0.95 Score=49.72 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=28.8
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
..+|+|||+|++|+.++..|+..|. .++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~------~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF------DVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC------eEEEEEeCC
Confidence 3689999999999999999999996 777776543
No 216
>PLN02688 pyrroline-5-carboxylate reductase
Probab=83.34 E-value=5 Score=42.76 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGV 236 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv 236 (800)
.+|.+||+|.+|+.++++|...|.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~ 24 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGV 24 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC
Confidence 379999999999999999999884
No 217
>PRK08291 ectoine utilization protein EutC; Validated
Probab=83.30 E-value=3.4 Score=45.89 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=50.3
Q ss_pred cCcEEEEcCCchHHHHHHHHHH-hcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEE
Q 003715 212 EAKVFVVGSGALGCEFLKNLAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 290 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal-~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~ 290 (800)
.++++|+|+|+.|...+..|+. .|+ .++++++. ...|++.+++.+.+.. .+.+.
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~-----~~V~v~~R-------------------~~~~a~~l~~~~~~~~-g~~v~ 186 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPI-----REVRVWAR-------------------DAAKAEAYAADLRAEL-GIPVT 186 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC-----CEEEEEcC-------------------CHHHHHHHHHHHhhcc-CceEE
Confidence 4689999999999999999885 567 68888742 2346777777665432 23333
Q ss_pred EeeccCCcchhcccchhhccCCCEEEEccCC
Q 003715 291 ALQIRANPETENVFNDTFWENLNVVVNALDN 321 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn 321 (800)
.+.. . .+.+.++|+|++|+-.
T Consensus 187 ~~~d-----~-----~~al~~aDiVi~aT~s 207 (330)
T PRK08291 187 VARD-----V-----HEAVAGADIIVTTTPS 207 (330)
T ss_pred EeCC-----H-----HHHHccCCEEEEeeCC
Confidence 3221 1 1335688999999754
No 218
>PRK08655 prephenate dehydrogenase; Provisional
Probab=83.26 E-value=2 Score=49.70 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=26.1
Q ss_pred cEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 214 KVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 214 ~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+|+||| +|++|..+++.|...|. +++++|.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~------~V~v~~r 32 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF------EVIVTGR 32 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC------EEEEEEC
Confidence 799997 89999999999999886 6777763
No 219
>PRK10537 voltage-gated potassium channel; Provisional
Probab=83.06 E-value=2 Score=48.87 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=56.2
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEE
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 291 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~ 291 (800)
+.+|+|+|.|.+|.++++.|...|. .++++|.|.++.. . ..+. ..
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~------~vvVId~d~~~~~-~--------------------------~~g~--~v 284 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQ------AVTVIVPLGLEHR-L--------------------------PDDA--DL 284 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCC------CEEEEECchhhhh-c--------------------------cCCC--cE
Confidence 5679999999999999999988887 7888887632100 0 0111 12
Q ss_pred eeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhccccc
Q 003715 292 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQ 336 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~ 336 (800)
+....+ .++.+...-.++++.|+.++++.+....+-..++..+
T Consensus 285 I~GD~t--d~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~ 327 (393)
T PRK10537 285 IPGDSS--DSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMS 327 (393)
T ss_pred EEeCCC--CHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhC
Confidence 233222 1222333345788999999988777766655555544
No 220
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=83.04 E-value=4.4 Score=42.47 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=26.7
Q ss_pred cCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 212 EAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 212 ~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+++|+|.|+ |+||.++++.|+..|. +++++|.
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~------~vi~~~r 34 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY------RVAVADI 34 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEEC
Confidence 457899985 8999999999999987 7777763
No 221
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=83.03 E-value=5.1 Score=46.96 Aligned_cols=123 Identities=10% Similarity=0.101 Sum_probs=68.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCcc---HHHHHHHHHHHH-CCCCe
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA---KSTVAASAAALI-NPHLN 288 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~---Ka~va~~~l~~~-np~v~ 288 (800)
.+|.+||+|..|+.+++||+..|. ++++.|.+.=....+... ...-|-. -+..+++.+..+ .|++-
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~------~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvI 76 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF------PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSV 76 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC------eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEE
Confidence 479999999999999999999998 888887542111111000 0000211 112233333332 25554
Q ss_pred EEEeeccCCcchhcccc--hhhccCCCEEEEccCC-HHHHHHHhhhcccccccEEEecccCc
Q 003715 289 TEALQIRANPETENVFN--DTFWENLNVVVNALDN-VNARLYIDQRCLYFQKPLLESGTLGA 347 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~--~~f~~~~dvVi~a~Dn-~~ar~~v~~~c~~~~~pli~sg~~G~ 347 (800)
+..+... ...+.+++ ...+..=|+|||+.-. ++.-..+.+.+...++.++++++.|.
T Consensus 77 i~~v~~~--~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 77 IILVKAG--APVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred EEECCCc--HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 4443321 11122221 1224455788888654 34444556677788999999998875
No 222
>PRK06138 short chain dehydrogenase; Provisional
Probab=82.95 E-value=4 Score=42.41 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=28.0
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
|++++++|.|+ |+||..+++.|+..|. ++++++
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~------~v~~~~ 36 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA------RVVVAD 36 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC------eEEEec
Confidence 45778999985 8999999999999986 677765
No 223
>PLN02240 UDP-glucose 4-epimerase
Probab=82.86 E-value=5.4 Score=43.95 Aligned_cols=33 Identities=30% Similarity=0.531 Sum_probs=28.2
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.+++|+|.|+ |.+|+.+++.|+..|. +++++|
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~------~V~~~~ 36 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY------KVVVID 36 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEe
Confidence 45678999985 9999999999999886 677776
No 224
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=82.78 E-value=3.7 Score=47.45 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=28.1
Q ss_pred cCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 212 EAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.+||+|.| .|-||+.+++.|...|. +++++|.+
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~------~V~~ldr~ 153 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD------EVIVIDNF 153 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 45899998 59999999999999987 78888743
No 225
>PRK12939 short chain dehydrogenase; Provisional
Probab=82.70 E-value=2.8 Score=43.48 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=27.6
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.+++|+|.|+ |+||.++++.|+..|. ++++++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~------~v~~~~ 38 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA------TVAFND 38 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC------EEEEEe
Confidence 45688999995 9999999999999997 566654
No 226
>PRK06523 short chain dehydrogenase; Provisional
Probab=82.50 E-value=2.7 Score=44.09 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=31.1
Q ss_pred HHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 209 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 209 ~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
++.+++|+|.|+ ||||.++++.|+..|. ++++++.+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~------~v~~~~r~~ 43 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA------RVVTTARSR 43 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC------EEEEEeCCh
Confidence 356788999995 8999999999999997 788887653
No 227
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=82.44 E-value=1.8 Score=47.26 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=27.5
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+|.+||+|.+|..++++|+..|. .+++.|.+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~------~v~v~dr~ 32 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH------EVVGYDVN 32 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC------EEEEEECC
Confidence 69999999999999999999997 67787754
No 228
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=82.30 E-value=9.2 Score=39.69 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=25.3
Q ss_pred CcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 213 AKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 213 ~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
.+|.||| +|.+|+.+++.|+..|- ++++.|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~------~V~v~~ 31 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN------KIIIGS 31 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC------EEEEEE
Confidence 3799997 89999999999999884 666654
No 229
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=82.23 E-value=1.2 Score=46.41 Aligned_cols=37 Identities=38% Similarity=0.460 Sum_probs=33.0
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.|+.++|+|.|.|.+|..+++.|...|. ..+.+.|.+
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~-----~vV~vsD~~ 56 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGG-----KVLAVSDPD 56 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCC-----EEEEEEcCC
Confidence 4678999999999999999999999998 678888854
No 230
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=82.22 E-value=1.1 Score=48.87 Aligned_cols=90 Identities=16% Similarity=0.226 Sum_probs=52.5
Q ss_pred hhHHHhhhhHHHHHHHhhcCccccccccccccccccCCCCCCCccCCCCccCcchhhhhhcCHHHHHHHHcCcEEEEcCC
Q 003715 142 PMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLPSEPLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSG 221 (800)
Q Consensus 142 Pv~AiiGGivaQEVIKait~k~~Pi~q~~~~d~~~~l~~~~l~~~~~~~~~~Rydrqi~l~G~~~q~~L~~~~VlIvG~G 221 (800)
+.|-+.+|+.--++=.++..+-.++..++=-|.+-..... .+.+ .-+...-......|.+++|+|+|+|
T Consensus 92 ~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~-~~Ae----------~ai~~al~~~~~~l~gk~v~IiG~G 160 (287)
T TIGR02853 92 GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSI-PTAE----------GAIMMAIEHTDFTIHGSNVMVLGFG 160 (287)
T ss_pred CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccH-hHHH----------HHHHHHHHhcCCCCCCCEEEEEcCh
Confidence 5666777777666555777777776644332211100000 0000 0011000001115678999999999
Q ss_pred chHHHHHHHHHHhcccCCCCcceeecC
Q 003715 222 ALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 222 giG~evlknLal~Gv~~~~~g~i~liD 248 (800)
++|..+++.|...|. +++++|
T Consensus 161 ~iG~avA~~L~~~G~------~V~v~~ 181 (287)
T TIGR02853 161 RTGMTIARTFSALGA------RVFVGA 181 (287)
T ss_pred HHHHHHHHHHHHCCC------EEEEEe
Confidence 999999999999997 777775
No 231
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=82.15 E-value=1 Score=47.15 Aligned_cols=42 Identities=26% Similarity=0.481 Sum_probs=35.1
Q ss_pred hcccccchhHHHhhhhHHHHHHHhhcCccccc-cccccccccc
Q 003715 135 GARAVLNPMAAMFGGIVGQEVVKACSGKFHPL-LQFFYFDSVE 176 (800)
Q Consensus 135 ~~~~el~Pv~AiiGGivaQEVIKait~k~~Pi-~q~~~~d~~~ 176 (800)
...+-++|+++++|+++++|+||.++|.-.|+ .+++.||..+
T Consensus 178 ~~~~~~~~~~~~~a~l~a~e~i~~l~g~~~~~~~~~~~~d~~~ 220 (228)
T cd00757 178 AEAGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDALS 220 (228)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCC
Confidence 34577999999999999999999999987665 5777888753
No 232
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=82.13 E-value=1.1 Score=47.86 Aligned_cols=44 Identities=25% Similarity=0.287 Sum_probs=35.4
Q ss_pred HHHHcCcEEEEcCCchHHHHHHHHHHhcccCCC-----CcceeecCCCc
Q 003715 208 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGN-----QGKLTITDDDV 251 (800)
Q Consensus 208 ~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~-----~g~i~liD~D~ 251 (800)
++|.+.||+++|+|+-|.-+++.|...|+..|- ..+|.++|..-
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~G 69 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKG 69 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCC
Confidence 368889999999999999999999999982111 13899999753
No 233
>PRK05866 short chain dehydrogenase; Provisional
Probab=82.11 E-value=2.9 Score=45.36 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=28.0
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.+++|+|.|+ ||||.++++.|+..|. ++++++
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~------~Vi~~~ 71 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA------TVVAVA 71 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEE
Confidence 45678999985 9999999999999997 677765
No 234
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=82.08 E-value=1.1 Score=49.75 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=32.3
Q ss_pred HHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeec
Q 003715 208 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTIT 247 (800)
Q Consensus 208 ~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~li 247 (800)
..|.+++|+|||+|-+|..++++|...|+ ++|+++
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~-----~~i~v~ 204 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGY-----SRITFC 204 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCC-----CEEEEE
Confidence 35889999999999999999999999999 789996
No 235
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=82.06 E-value=1.1 Score=51.48 Aligned_cols=35 Identities=40% Similarity=0.616 Sum_probs=31.6
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+.+.+|+|+|+|++|..+++.|...|+ .+++++|.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~-----~~V~v~~r 214 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGV-----RKITVANR 214 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCC-----CeEEEEeC
Confidence 678999999999999999999999998 78888753
No 236
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=82.04 E-value=1.8 Score=50.32 Aligned_cols=120 Identities=12% Similarity=0.163 Sum_probs=66.6
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCc--cHHHHHHHHHHHH-CCCCeEE
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ--AKSTVAASAAALI-NPHLNTE 290 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~--~Ka~va~~~l~~~-np~v~i~ 290 (800)
.|.|||+|..|..++.||+..|. ++++.|.+.-....+..+. ..|. .-+..+++.+..+ .|++-+.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~------~V~v~drt~~~~~~l~~~~-----~~g~~~~~~~s~~e~v~~l~~~dvIil 69 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF------TVSVYNRTPEKTDEFLAEH-----AKGKKIVGAYSIEEFVQSLERPRKIML 69 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC------eEEEEeCCHHHHHHHHhhc-----cCCCCceecCCHHHHHhhcCCCCEEEE
Confidence 47899999999999999999998 7888876432222221110 0010 0111223333333 3554444
Q ss_pred EeeccCCcchhcccc--hhhccCCCEEEEccC-C-HHHHHHHhhhcccccccEEEecccCc
Q 003715 291 ALQIRANPETENVFN--DTFWENLNVVVNALD-N-VNARLYIDQRCLYFQKPLLESGTLGA 347 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~--~~f~~~~dvVi~a~D-n-~~ar~~v~~~c~~~~~pli~sg~~G~ 347 (800)
.... ....+.+++ ...+..=|+||++.- . ..+++. .+.+...++-++++++.|.
T Consensus 70 ~v~~--~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~-~~~l~~~gi~fvdapVsGG 127 (467)
T TIGR00873 70 MVKA--GAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERR-YKELKAKGILFVGSGVSGG 127 (467)
T ss_pred ECCC--cHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHH-HHHHHhcCCEEEcCCCCCC
Confidence 4332 111112211 123455689999874 3 333433 4456777889999998874
No 237
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=82.03 E-value=1.4 Score=47.70 Aligned_cols=31 Identities=26% Similarity=0.208 Sum_probs=29.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
++|+|+|+||.|..++-.|+..|+ .+|+|++
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~-----~~i~i~n 153 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGF-----TDGTIVA 153 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC-----CEEEEEe
Confidence 589999999999999999999999 8899985
No 238
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=81.98 E-value=1.6 Score=50.85 Aligned_cols=123 Identities=11% Similarity=0.134 Sum_probs=66.3
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCcc--HHHHHHHHHHHH-CCCCeE
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA--KSTVAASAAALI-NPHLNT 289 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~--Ka~va~~~l~~~-np~v~i 289 (800)
++|.|||+|..|..++.||+..|. ++++.|.+.=....+.... ..-|.. -+..+++.+..+ .|++-+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~------~V~v~dr~~~~~~~l~~~~----~~~g~~i~~~~s~~e~v~~l~~~d~Ii 71 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF------KISVYNRTYEKTEEFVKKA----KEGNTRVKGYHTLEELVNSLKKPRKVI 71 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC------eEEEEeCCHHHHHHHHHhh----hhcCCcceecCCHHHHHhcCCCCCEEE
Confidence 479999999999999999999998 7888875432211111000 000100 111233333332 244333
Q ss_pred EEeeccCCcchhcccc--hhhccCCCEEEEccCC-HHHHHHHhhhcccccccEEEecccCc
Q 003715 290 EALQIRANPETENVFN--DTFWENLNVVVNALDN-VNARLYIDQRCLYFQKPLLESGTLGA 347 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~--~~f~~~~dvVi~a~Dn-~~ar~~v~~~c~~~~~pli~sg~~G~ 347 (800)
...... ...+.+++ ...++.=|+||++.-. .+.-......+...++-++++|+.|.
T Consensus 72 l~v~~~--~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG 130 (470)
T PTZ00142 72 LLIKAG--EAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG 130 (470)
T ss_pred EEeCCh--HHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence 332210 01111111 1234556889988754 23223334667778899999998874
No 239
>PRK06125 short chain dehydrogenase; Provisional
Probab=81.83 E-value=4.5 Score=42.56 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=28.8
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+.+++++|.|+ ||+|.++++.|+..|. ++++++.
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~------~V~~~~r 39 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC------HLHLVAR 39 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeC
Confidence 56778999997 7999999999999997 7777653
No 240
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=81.75 E-value=3.8 Score=45.79 Aligned_cols=108 Identities=15% Similarity=0.258 Sum_probs=63.3
Q ss_pred cCcEEEEcC-CchHHHHHHHHHH-hcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeE
Q 003715 212 EAKVFVVGS-GALGCEFLKNLAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 289 (800)
Q Consensus 212 ~~~VlIvG~-GgiG~evlknLal-~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i 289 (800)
+.+|.|||+ |.+|.|+++.|.. ..+ +.+++.++. .+...|+.= .+. ..++.+
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f---~v~~l~~~a---------------S~~saGk~~------~~~--~~~l~v 58 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKF---NIAEVTLLS---------------SKRSAGKTV------QFK--GREIII 58 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCC---CcccEEEEE---------------CcccCCCCe------eeC--CcceEE
Confidence 358999997 9999999999994 555 113455442 223445421 000 011122
Q ss_pred EEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEe-cccCcccceEEEeCCc
Q 003715 290 EALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLES-GTLGAKCNTQMVIPHL 358 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~s-g~~G~~G~v~~iip~~ 358 (800)
... +.+-|.+.|+|+.|+.+-.++.+.... ...+.++||. +..-+.-.+..++|.+
T Consensus 59 ~~~------------~~~~~~~~Divf~a~~~~~s~~~~~~~-~~~G~~VID~Ss~fR~~~~vplvvPEv 115 (347)
T PRK06728 59 QEA------------KINSFEGVDIAFFSAGGEVSRQFVNQA-VSSGAIVIDNTSEYRMAHDVPLVVPEV 115 (347)
T ss_pred EeC------------CHHHhcCCCEEEECCChHHHHHHHHHH-HHCCCEEEECchhhcCCCCCCeEeCCc
Confidence 111 122247899999999998888877754 4568888863 3344433444555543
No 241
>PRK06139 short chain dehydrogenase; Provisional
Probab=81.62 E-value=2.9 Score=46.35 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=28.8
Q ss_pred HHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 209 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
.+.++.|+|.|+ ||||.++++.|+..|. ++++++
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~------~Vvl~~ 38 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA------RLVLAA 38 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC------EEEEEE
Confidence 356778999996 8999999999999997 677765
No 242
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.60 E-value=1.3 Score=48.01 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=29.1
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.+|.|||+|.+|+.++.+|+..|. .++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC------eEEEEeCC
Confidence 589999999999999999999998 88888854
No 243
>PLN02427 UDP-apiose/xylose synthase
Probab=81.55 E-value=3.5 Score=46.47 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=28.3
Q ss_pred HHHcCcEEEEc-CCchHHHHHHHHHHhc-ccCCCCcceeecCC
Q 003715 209 KLEEAKVFVVG-SGALGCEFLKNLALMG-VSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlIvG-~GgiG~evlknLal~G-v~~~~~g~i~liD~ 249 (800)
.++.++|+|.| +|-||+.+++.|+..| . +++.+|.
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~------~V~~l~r 47 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPH------KVLALDV 47 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCC------EEEEEec
Confidence 45567899999 5999999999999985 4 6777763
No 244
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=81.41 E-value=1.3 Score=50.78 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=29.1
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.+|+|||+|-.|||+|..|++.|+ +++|+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~------~V~LiE~r 32 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV------PVILYEMR 32 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC------cEEEEecc
Confidence 379999999999999999999998 88998864
No 245
>PRK08339 short chain dehydrogenase; Provisional
Probab=81.37 E-value=4.7 Score=42.76 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=28.1
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
|.++.++|.|+ ||||.++++.|+..|. +++++|
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~------~V~~~~ 39 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA------DVILLS 39 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC------EEEEEe
Confidence 56678899985 7999999999999997 677776
No 246
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=81.33 E-value=11 Score=41.15 Aligned_cols=80 Identities=11% Similarity=0.216 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHhhcccccchhHHHhhhhHHHHHHHhhcCccccccccccccccc
Q 003715 97 GSEEDAQKIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVE 176 (800)
Q Consensus 97 ~~~~Da~~l~~i~~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~Pv~AiiGGivaQEVIKait~k~~Pi~q~~~~d~~~ 176 (800)
.+.++.+-+++-+.+...+.. ...++..++.-+....---++...|++.++.|-|++|.+|.-+.|++||+.|.+.+
T Consensus 240 dd~~hI~wi~er~~eRA~ef~---I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~e 316 (422)
T KOG2015|consen 240 DDPEHIEWIVERSNERANEFN---ITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEE 316 (422)
T ss_pred CCHHHHHHHHHHHHHHhhhcc---cccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeeccc
Confidence 347777777777766666542 22344444432222222223344489999999999999999999999999999877
Q ss_pred cCC
Q 003715 177 SLP 179 (800)
Q Consensus 177 ~l~ 179 (800)
..-
T Consensus 317 G~y 319 (422)
T KOG2015|consen 317 GIY 319 (422)
T ss_pred cee
Confidence 653
No 247
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=81.21 E-value=3.6 Score=46.66 Aligned_cols=98 Identities=22% Similarity=0.293 Sum_probs=58.9
Q ss_pred HcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeE
Q 003715 211 EEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 289 (800)
Q Consensus 211 ~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i 289 (800)
+..||+|+|+ |.+|.|+++.|..... .+|+.+-. +...|+. +...+|.+.-
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~-----~el~~l~s---------------~~saG~~--------i~~~~~~l~~ 88 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPD-----FEITVMTA---------------DRKAGQS--------FGSVFPHLIT 88 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCC-----CeEEEEEC---------------hhhcCCC--------chhhCccccC
Confidence 4569999997 8999999999988743 46766521 1223332 1222232211
Q ss_pred EEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecc
Q 003715 290 EALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGT 344 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~ 344 (800)
.... .+. . .+..-+++.|+|+.|+.+-.++.++..+ ..++.+|+.++
T Consensus 89 ~~~~-~~~----~-~~~~~~~~~DvVf~Alp~~~s~~i~~~~--~~g~~VIDlSs 135 (381)
T PLN02968 89 QDLP-NLV----A-VKDADFSDVDAVFCCLPHGTTQEIIKAL--PKDLKIVDLSA 135 (381)
T ss_pred cccc-cee----c-CCHHHhcCCCEEEEcCCHHHHHHHHHHH--hCCCEEEEcCc
Confidence 0000 000 0 1112247899999999998888888875 35777887554
No 248
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=81.18 E-value=1.5 Score=47.78 Aligned_cols=32 Identities=34% Similarity=0.486 Sum_probs=28.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
++|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~------~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM------DVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC------eEEEEeCC
Confidence 579999999999999999999997 88898854
No 249
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.16 E-value=4.6 Score=44.35 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=29.4
Q ss_pred HcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 211 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
..++|+|.|||.||-......-.+|. .+|+++|.
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA-----~~VVi~d~ 202 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGA-----SDVVITDL 202 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCC-----CcEEEeec
Confidence 46789999999999888888888888 89999874
No 250
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=81.12 E-value=5 Score=43.14 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.5
Q ss_pred CcEEEEcCCchHHHHHHHHHHhc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMG 235 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~G 235 (800)
.||.|||+|.+|..+++.|...+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~ 24 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGR 24 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCC
Confidence 47999999999999999998764
No 251
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=81.07 E-value=1.4 Score=47.80 Aligned_cols=33 Identities=33% Similarity=0.402 Sum_probs=29.5
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
.+|.|||+|.+|+.++..|+..|. .++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~------~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY------DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC------eEEEEeCCH
Confidence 579999999999999999999998 789988643
No 252
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=81.04 E-value=4.9 Score=49.11 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=28.6
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
|.+++|+|.|+ ||||.++++.|+..|. +++++|.
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga------~Vvi~~r 446 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGA------HVVLADL 446 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC------EEEEEeC
Confidence 45678999985 8999999999999997 7888763
No 253
>PRK12367 short chain dehydrogenase; Provisional
Probab=80.97 E-value=1.6 Score=46.13 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=33.5
Q ss_pred HHHHHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 206 LQKKLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 206 ~q~~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.|.++++++++|.|+ ||||.++++.|+..|. ++++++.+
T Consensus 8 ~~~~l~~k~~lITGas~gIG~ala~~l~~~G~------~Vi~~~r~ 47 (245)
T PRK12367 8 AQSTWQGKRIGITGASGALGKALTKAFRAKGA------KVIGLTHS 47 (245)
T ss_pred hHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 478999999999985 8999999999999997 67777643
No 254
>PLN00106 malate dehydrogenase
Probab=80.87 E-value=1.5 Score=48.56 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=32.0
Q ss_pred HcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 211 EEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 211 ~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
...||.|+|+ |.||+.++-.|++.|++ ++|.|+|-+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~----~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLV----SELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCC----CEEEEEecCC
Confidence 3569999999 99999999999999985 6899998544
No 255
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.74 E-value=3.3 Score=45.17 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=29.0
Q ss_pred HHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 209 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.+.+++++|.|+ ||||.++++.|+..|. +++++|.
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga------~Vv~~~~ 44 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGA------TVVVNDV 44 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEecC
Confidence 456788999985 8999999999999997 6777663
No 256
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.72 E-value=1.6 Score=48.05 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=28.6
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+|.|||+|.+|+.++-.|++.|++ .++.++|.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~----~ev~l~D~ 33 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLA----SEIVLVDI 33 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCC----CEEEEEEC
Confidence 799999999999999999999973 57999973
No 257
>PLN02928 oxidoreductase family protein
Probab=80.67 E-value=1.3 Score=49.53 Aligned_cols=36 Identities=42% Similarity=0.598 Sum_probs=31.9
Q ss_pred HHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 208 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 208 ~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
..|.+++|.|||.|.||.++++.|...|+ +++.+|.
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~------~V~~~dr 190 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGV------KLLATRR 190 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCC------EEEEECC
Confidence 35889999999999999999999998887 7777764
No 258
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=80.65 E-value=5.2 Score=44.04 Aligned_cols=37 Identities=22% Similarity=0.413 Sum_probs=28.4
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+++++|+|.|+ |+||+.+++.|+..|-. .+++++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~----~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNP----KKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCC----cEEEEEcCC
Confidence 35678999985 89999999999998720 367777643
No 259
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=80.57 E-value=4.8 Score=41.66 Aligned_cols=139 Identities=15% Similarity=0.085 Sum_probs=78.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcc----c-C-CCC------------------------cceeec---------------
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGV----S-C-GNQ------------------------GKLTIT--------------- 247 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv----~-~-~~~------------------------g~i~li--------------- 247 (800)
+++.|+|.|-+|+.++..|+..|. + + +++ +.++++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~ 81 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAELR 81 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHHH
Confidence 478999999999999999999985 1 1 110 111110
Q ss_pred ----CCCcccccCCccccccccCccCc-cHHHHHHHHHHHHCCCCeEEEeeccCCcchhcccchhhc-cCCCEEEEccCC
Q 003715 248 ----DDDVIEKSNLSRQFLFRDWNIGQ-AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFW-ENLNVVVNALDN 321 (800)
Q Consensus 248 ----D~D~Ie~sNLnRQflf~~~dIG~-~Ka~va~~~l~~~np~v~i~~~~~~v~~~~~~~~~~~f~-~~~dvVi~a~Dn 321 (800)
|.=.|+.+|---- .+...+++. +-...+++.+.+.-|+-++..--..+...... +..-- .+.| |.-|.|.
T Consensus 82 ~~~~~KIvID~tnp~~~-~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~--~~~~~~~~~~-v~vagDD 157 (211)
T COG2085 82 DALGGKIVIDATNPIEV-NGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLA--DLAKPGGRRD-VLVAGDD 157 (211)
T ss_pred HHhCCeEEEecCCCccc-cCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhc--cCCCcCCcee-EEEecCc
Confidence 1112334442100 222233332 22344667777777776443222222211100 00000 1233 4667799
Q ss_pred HHHHHHHhhhcccccccEEEecccCcccceEEEe
Q 003715 322 VNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVI 355 (800)
Q Consensus 322 ~~ar~~v~~~c~~~~~pli~sg~~G~~G~v~~ii 355 (800)
.+|+..+-+.+...+.--+++|.+--...++.+-
T Consensus 158 ~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le~~t 191 (211)
T COG2085 158 AEAKAVVAELAEDIGFRPLDAGPLENARILEPGT 191 (211)
T ss_pred HHHHHHHHHHHHhcCcceeecccccccccccccc
Confidence 9999999999999999889999887666555443
No 260
>PRK07814 short chain dehydrogenase; Provisional
Probab=80.31 E-value=3.9 Score=43.26 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=29.0
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+.+++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~------~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA------DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56778999985 6899999999999997 77777643
No 261
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=80.30 E-value=1.5 Score=48.29 Aligned_cols=31 Identities=39% Similarity=0.648 Sum_probs=28.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCc-ceeecC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQG-KLTITD 248 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g-~i~liD 248 (800)
.||.|||+|.+|+.+|-.|+.-|+ + ++.|+|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~-----~~el~LiD 32 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGL-----GSELVLID 32 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccc-----cceEEEEE
Confidence 479999999999999999998999 6 999997
No 262
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.27 E-value=1.4 Score=48.72 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=29.3
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcccC-CCCcceeecC
Q 003715 213 AKVFVVGS-GALGCEFLKNLALMGVSC-GNQGKLTITD 248 (800)
Q Consensus 213 ~~VlIvG~-GgiG~evlknLal~Gv~~-~~~g~i~liD 248 (800)
.||.|||+ |.+|+.+|-.|+..|++. ...-+|+|+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~D 40 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLE 40 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEe
Confidence 58999999 999999999999999951 1111789987
No 263
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=80.22 E-value=4.9 Score=43.50 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=26.6
Q ss_pred cEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 214 KVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 214 ~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+|+|.| +|.+|..+++.|+..|. +++++|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~------~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE------EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC------EEEEEEec
Confidence 689998 59999999999999986 77887753
No 264
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=80.19 E-value=2.7 Score=44.12 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=30.2
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
+.+++++|.|+ |+||.++++.|+..|. +++++|.+.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~------~v~~~~r~~ 40 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA------RVVIADIKP 40 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEcCCH
Confidence 55678999985 9999999999999997 788877543
No 265
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=80.10 E-value=2.1 Score=50.63 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=31.3
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.|.+++|.|||.|.+|.++++.|...|+ ++..+|.
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~ 169 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKRAKAFGM------KVLAYDP 169 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECC
Confidence 5889999999999999999999998887 7777764
No 266
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=80.08 E-value=4.1 Score=43.98 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.5
Q ss_pred cCcEEEEcCCchHHHHHHHHHHh
Q 003715 212 EAKVFVVGSGALGCEFLKNLALM 234 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~ 234 (800)
..||.|||+|.+|..++++|...
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~ 28 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRG 28 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhc
Confidence 46899999999999999999864
No 267
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=80.07 E-value=4 Score=42.38 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=28.3
Q ss_pred HHcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
|++++++|.| .|+||.++++.|+..|. ++.++|.
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~------~v~~~~r 35 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA------KVAVFDL 35 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEecC
Confidence 3578899998 58999999999999987 6777653
No 268
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=79.90 E-value=3 Score=45.72 Aligned_cols=28 Identities=21% Similarity=0.507 Sum_probs=25.7
Q ss_pred EEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 217 VVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 217 IvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
|||+|.+|+.++-.|++.|++ ++|.|+|
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~----~el~L~D 28 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIA----DEIVLID 28 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCC----CEEEEEe
Confidence 689999999999999999985 6899997
No 269
>PRK06940 short chain dehydrogenase; Provisional
Probab=79.89 E-value=4.5 Score=43.31 Aligned_cols=31 Identities=26% Similarity=0.534 Sum_probs=25.2
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
++.++|.|+||||.++++.|+ .|. +++++|.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~------~Vv~~~r 32 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK------KVLLADY 32 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC------EEEEEeC
Confidence 456788899999999999996 676 7887763
No 270
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=79.88 E-value=1.5 Score=48.64 Aligned_cols=32 Identities=31% Similarity=0.633 Sum_probs=28.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.+|+|||+|++|+.++..|+..|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~------~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA------DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC------cEEEEecH
Confidence 579999999999999999999997 78888753
No 271
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=79.86 E-value=4.7 Score=45.14 Aligned_cols=98 Identities=21% Similarity=0.272 Sum_probs=56.5
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcccCCCCccee-ecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEE
Q 003715 213 AKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLT-ITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 290 (800)
Q Consensus 213 ~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~-liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~ 290 (800)
.||+|+|+ |.+|.++++.|...-. -++. +++.+. ..|+. +.+..|.+...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~-----~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~ 52 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE-----VEITYLVSSRE---------------SAGKP--------VSEVHPHLRGL 52 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC-----ceEEEEeccch---------------hcCCC--------hHHhCcccccc
Confidence 37999998 9999999999986522 3555 444331 12221 11122322110
Q ss_pred EeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecc
Q 003715 291 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGT 344 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~ 344 (800)
. ...+.+.+ ..++..++|+|+.|+.+..++.++... ...++.+|+.+.
T Consensus 53 ~-~~~~~~~~----~~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~ 100 (346)
T TIGR01850 53 V-DLNLEPID----EEEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSA 100 (346)
T ss_pred C-CceeecCC----HHHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCCh
Confidence 0 00011000 023335899999999998888887765 346788887543
No 272
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=79.80 E-value=1.5 Score=48.50 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=28.7
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcccC-CCCcceeecC
Q 003715 213 AKVFVVGS-GALGCEFLKNLALMGVSC-GNQGKLTITD 248 (800)
Q Consensus 213 ~~VlIvG~-GgiG~evlknLal~Gv~~-~~~g~i~liD 248 (800)
.||.|||+ |.+|+.++-.|+..|++. ...-+|+|+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~D 41 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLD 41 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEe
Confidence 48999998 999999999999999851 0111788886
No 273
>PRK06223 malate dehydrogenase; Reviewed
Probab=79.80 E-value=1.7 Score=47.62 Aligned_cols=32 Identities=28% Similarity=0.531 Sum_probs=29.5
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.||.|||+|.+|+.++..|+..|+ +++.++|-
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~-----~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKEL-----GDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-----eEEEEEEC
Confidence 589999999999999999999998 68999985
No 274
>PRK13529 malate dehydrogenase; Provisional
Probab=79.71 E-value=0.81 Score=53.73 Aligned_cols=90 Identities=21% Similarity=0.485 Sum_probs=60.8
Q ss_pred HHHHHHhhcCccccccccccccccccCCCCCCCccCCCCccCcchhhhhhcCHHHH------------------HHHHcC
Q 003715 152 GQEVVKACSGKFHPLLQFFYFDSVESLPSEPLDPRDLQPLNSRYDAQISVFGSKLQ------------------KKLEEA 213 (800)
Q Consensus 152 aQEVIKait~k~~Pi~q~~~~d~~~~l~~~~l~~~~~~~~~~Rydrqi~l~G~~~q------------------~~L~~~ 213 (800)
-.|.+.++...| |-. .+.|..+.. ......-+||...+.+|..+.| .+|.+.
T Consensus 227 ~defv~av~~~~-P~~-~I~~EDf~~--------~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~ 296 (563)
T PRK13529 227 VDEFVQAVKRRF-PNA-LLQFEDFAQ--------KNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQ 296 (563)
T ss_pred HHHHHHHHHHhC-CCe-EEehhhcCC--------chHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhc
Confidence 479999999999 753 445554432 1111122667777777654433 468889
Q ss_pred cEEEEcCCchHHHHHHHHHH----hcccCC-CCcceeecCCCc
Q 003715 214 KVFVVGSGALGCEFLKNLAL----MGVSCG-NQGKLTITDDDV 251 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal----~Gv~~~-~~g~i~liD~D~ 251 (800)
||+++|+|+-|.-+++.|+. .|+.-. -..+|.++|..-
T Consensus 297 riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~G 339 (563)
T PRK13529 297 RIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQG 339 (563)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence 99999999999999999987 477211 024899999763
No 275
>PRK08589 short chain dehydrogenase; Validated
Probab=79.66 E-value=4 Score=43.47 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=28.1
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.+++++|.|+ ||||.++++.|+..|. ++++++
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~------~vi~~~ 37 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA------YVLAVD 37 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEe
Confidence 55778999986 8999999999999997 677764
No 276
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.65 E-value=2.1 Score=51.55 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=61.0
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEE
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 291 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~ 291 (800)
+.+|+|+|.|.+|..+++.|...|+ .++++|.|.- +++ .+++. + ...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~------~vvvID~d~~-------------------~v~----~~~~~--g--~~v 446 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM------RITVLERDIS-------------------AVN----LMRKY--G--YKV 446 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC------CEEEEECCHH-------------------HHH----HHHhC--C--CeE
Confidence 4689999999999999999999998 8999987641 122 22221 1 233
Q ss_pred eeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccc
Q 003715 292 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF 335 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~ 335 (800)
+..+.+. .+.+...-.+++|+||.++|+.+.-..+-..++.+
T Consensus 447 ~~GDat~--~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~ 488 (601)
T PRK03659 447 YYGDATQ--LELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQH 488 (601)
T ss_pred EEeeCCC--HHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 4443332 22232334578999999999998887776666654
No 277
>PRK12827 short chain dehydrogenase; Provisional
Probab=79.54 E-value=4.9 Score=41.57 Aligned_cols=33 Identities=33% Similarity=0.579 Sum_probs=28.1
Q ss_pred HHcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.+++++|.| .|+||.++++.|+..|. ++++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~------~v~~~~ 37 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGA------DVIVLD 37 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC------eEEEEc
Confidence 4567899998 59999999999999997 677776
No 278
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=79.52 E-value=4.3 Score=42.40 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=17.4
Q ss_pred CcEEEEcCCchHHHHHHHHHHhc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMG 235 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~G 235 (800)
.+|.|||||+||.-+++. .+-|
T Consensus 1 l~vgiVGcGaIG~~l~e~-v~~~ 22 (255)
T COG1712 1 LKVGIVGCGAIGKFLLEL-VRDG 22 (255)
T ss_pred CeEEEEeccHHHHHHHHH-HhcC
Confidence 379999999999988875 4444
No 279
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=79.48 E-value=1.7 Score=49.37 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=29.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
++|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~------~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY------QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC------eEEEEeCCC
Confidence 489999999999999999999997 799998554
No 280
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=79.42 E-value=3.8 Score=44.05 Aligned_cols=31 Identities=13% Similarity=0.042 Sum_probs=25.9
Q ss_pred cCCCEEEEccCCHHHHHHHhhhcccccccEEE
Q 003715 310 ENLNVVVNALDNVNARLYIDQRCLYFQKPLLE 341 (800)
Q Consensus 310 ~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~ 341 (800)
..+|+||+++ .+.+-..+-..|..+++|++.
T Consensus 67 ~~~DvVIdfT-~p~~~~~~~~~al~~g~~vVi 97 (266)
T TIGR00036 67 TDPDVLIDFT-TPEGVLNHLKFALEHGVRLVV 97 (266)
T ss_pred CCCCEEEECC-ChHHHHHHHHHHHHCCCCEEE
Confidence 4689999998 667777777899999999994
No 281
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=79.37 E-value=0.86 Score=53.73 Aligned_cols=89 Identities=22% Similarity=0.439 Sum_probs=58.4
Q ss_pred HHHHHHhhcCcccc--ccccccccccccCCCCCCCccCCCCccCcchhhhhhcCHHHH------------------HHHH
Q 003715 152 GQEVVKACSGKFHP--LLQFFYFDSVESLPSEPLDPRDLQPLNSRYDAQISVFGSKLQ------------------KKLE 211 (800)
Q Consensus 152 aQEVIKait~k~~P--i~q~~~~d~~~~l~~~~l~~~~~~~~~~Rydrqi~l~G~~~q------------------~~L~ 211 (800)
-.|+++++..+|-| +=|| ..+.. ......-+||...+.+|..+.| .+|.
T Consensus 252 ~defv~av~~~fGp~~~I~~---EDf~~--------~~af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~ 320 (581)
T PLN03129 252 VDEFMEAVKQRWGPKVLVQF---EDFAN--------KNAFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLA 320 (581)
T ss_pred HHHHHHHHHHHhCCccEEeh---hhcCC--------ccHHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchh
Confidence 58999999998877 3333 32221 1111122566656666654333 4688
Q ss_pred cCcEEEEcCCchHHHHHHHHHHh-----cccCCC-CcceeecCCCc
Q 003715 212 EAKVFVVGSGALGCEFLKNLALM-----GVSCGN-QGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~-----Gv~~~~-~g~i~liD~D~ 251 (800)
+.||+++|+|+-|..+++.|+.+ |+.-.. ..+|.++|.+-
T Consensus 321 d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~G 366 (581)
T PLN03129 321 DQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKG 366 (581)
T ss_pred hceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCC
Confidence 99999999999999999999985 441111 25899999763
No 282
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.24 E-value=4.1 Score=42.16 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=50.2
Q ss_pred cCcEEEEcC--CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHH--HHCCCC
Q 003715 212 EAKVFVVGS--GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAA--LINPHL 287 (800)
Q Consensus 212 ~~~VlIvG~--GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~--~~np~v 287 (800)
.++|+|.|| ||||-++++-+++-|. .+.-+-...=...||.-||-.....+.-.|-+-..+... +-||+-
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~------~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~G 80 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGY------LVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDG 80 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCe------EEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCC
Confidence 467999997 9999999999999997 333333333334577777655544444444444443333 345777
Q ss_pred eEEEeeccC
Q 003715 288 NTEALQIRA 296 (800)
Q Consensus 288 ~i~~~~~~v 296 (800)
+++.+-...
T Consensus 81 kld~L~NNA 89 (289)
T KOG1209|consen 81 KLDLLYNNA 89 (289)
T ss_pred ceEEEEcCC
Confidence 777765543
No 283
>PRK06181 short chain dehydrogenase; Provisional
Probab=79.14 E-value=6.6 Score=41.26 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=25.7
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 213 AKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 213 ~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
.+|+|.|+ |++|.++++.|+..|. +++++|
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~------~Vi~~~ 32 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA------QLVLAA 32 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC------EEEEEe
Confidence 46899986 9999999999998886 677765
No 284
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=79.08 E-value=7.7 Score=41.64 Aligned_cols=31 Identities=19% Similarity=0.503 Sum_probs=24.2
Q ss_pred cEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 214 KVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 214 ~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+|+|.|+ |.+|..+++.|+..|- .-+++++|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~----~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHP----DAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCC----CCEEEEec
Confidence 5899985 9999999999998872 02566665
No 285
>PRK06949 short chain dehydrogenase; Provisional
Probab=79.01 E-value=4.9 Score=41.97 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=28.2
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.+++|+|.|+ |+||..+++.|+..|. ++++++
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~------~Vi~~~ 40 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA------KVVLAS 40 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEe
Confidence 56788999985 9999999999999997 577664
No 286
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=78.98 E-value=1.8 Score=46.37 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=19.9
Q ss_pred cCcEEEEcCCchHHHHHHHHHHh
Q 003715 212 EAKVFVVGSGALGCEFLKNLALM 234 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~ 234 (800)
..||.|||||+||..+++.|..-
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~ 24 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLAD 24 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcC
Confidence 35899999999999999998654
No 287
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=78.88 E-value=5.7 Score=43.30 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=27.9
Q ss_pred HcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 211 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
...+|+|+|+|++|...+..+..+|. ..+.++|.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~-----~~v~~~~~ 177 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGG-----SPPAVWET 177 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-----ceEEEeCC
Confidence 45689999999999999988888898 56766653
No 288
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=78.83 E-value=6.4 Score=41.49 Aligned_cols=33 Identities=18% Similarity=0.424 Sum_probs=27.7
Q ss_pred HHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeec
Q 003715 209 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTIT 247 (800)
Q Consensus 209 ~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~li 247 (800)
.|++++++|.|+ ||||.++++.|+..|. +++++
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~------~v~~~ 38 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGV------NIAFT 38 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEE
Confidence 467788999985 8999999999999998 56654
No 289
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=78.81 E-value=1.8 Score=47.00 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=26.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
.||+|+|+|++|+.++..|+..|. .+++++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~------~V~~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR------DVTFLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC------ceEEEe
Confidence 379999999999999999999986 677776
No 290
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=78.78 E-value=1.7 Score=48.42 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=31.3
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcc
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVI 252 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~I 252 (800)
...|+|||+|-+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~------~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL------RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC------eEEEEecccC
Confidence 3469999999999999999999998 8999998754
No 291
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=78.74 E-value=1.8 Score=47.39 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=29.4
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
.+|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~------~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH------EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC------eeEEEeCCH
Confidence 379999999999999999999997 799998653
No 292
>PRK08223 hypothetical protein; Validated
Probab=78.42 E-value=1.5 Score=47.55 Aligned_cols=37 Identities=27% Similarity=0.351 Sum_probs=32.1
Q ss_pred chhHHHhhhhHHHHHHHhhcCccccc--ccccccccccc
Q 003715 141 NPMAAMFGGIVGQEVVKACSGKFHPL--LQFFYFDSVES 177 (800)
Q Consensus 141 ~Pv~AiiGGivaQEVIKait~k~~Pi--~q~~~~d~~~~ 177 (800)
.|+|.++|++.|.|+||.++|...|+ -.+++||+++.
T Consensus 219 g~~~g~~g~~~a~E~ik~l~g~g~~~~~~~~~~~d~~~~ 257 (287)
T PRK08223 219 GLACQLCAGVVATEVLKILLGRGRVYAAPWFHQFDAYRS 257 (287)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCCcCCCCeEEEEEcCCc
Confidence 88999999999999999999998885 46778998654
No 293
>PRK06720 hypothetical protein; Provisional
Probab=78.35 E-value=5.5 Score=39.78 Aligned_cols=35 Identities=31% Similarity=0.323 Sum_probs=29.1
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+.++.++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~------~V~l~~r~ 49 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGA------KVIVTDID 49 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCC------EEEEEECC
Confidence 56778889986 5799999999999996 78888744
No 294
>PRK07680 late competence protein ComER; Validated
Probab=78.31 E-value=7.8 Score=41.63 Aligned_cols=33 Identities=24% Similarity=0.488 Sum_probs=25.2
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+|.|||+|.+|+.++..|...|.. ....+.++|
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~--~~~~v~v~~ 34 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAV--KPSQLTITN 34 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCC--CcceEEEEC
Confidence 699999999999999999998841 112456654
No 295
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.30 E-value=8.6 Score=41.51 Aligned_cols=35 Identities=11% Similarity=0.361 Sum_probs=26.6
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.+|.+||+|-+|..++++|...|.. ...+|.+.|
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~--~~~~I~v~~ 36 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIV--SPDQIICSD 36 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCC--CCceEEEEC
Confidence 45899999999999999999988851 112456554
No 296
>PRK05872 short chain dehydrogenase; Provisional
Probab=78.23 E-value=6.7 Score=42.44 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=28.9
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+.+++|+|.|+ ||||.++++.|+..|. ++++++.
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~------~V~~~~r 41 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA------KLALVDL 41 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeC
Confidence 56778999985 8999999999999997 6777753
No 297
>PRK05876 short chain dehydrogenase; Provisional
Probab=78.23 E-value=5 Score=42.95 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=28.0
Q ss_pred HHcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.++.++|.| .||||.++++.|+..|. +++++|
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~------~Vv~~~ 37 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA------RVVLGD 37 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEe
Confidence 4567788988 68999999999999997 677765
No 298
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=78.21 E-value=4.5 Score=45.11 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=53.0
Q ss_pred cEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEe
Q 003715 214 KVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 292 (800)
Q Consensus 214 ~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~ 292 (800)
+|+||| .|.+|.|+++.|+..|. +..++.++ .+..+.|+.=. ..+..+...
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~h---p~~~l~~~---------------as~~~~g~~~~----------~~~~~~~~~ 52 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNF---PIDKLVLL---------------ASDRSAGRKVT----------FKGKELEVN 52 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCC---ChhhEEEE---------------eccccCCCeee----------eCCeeEEEE
Confidence 689999 59999999999988766 22344432 22233443110 001111111
Q ss_pred eccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEe
Q 003715 293 QIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLES 342 (800)
Q Consensus 293 ~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~s 342 (800)
.+. .+-+.++|+|+.|+.+..++.+..+. ...+..+|+.
T Consensus 53 --~~~--------~~~~~~~D~v~~a~g~~~s~~~a~~~-~~~G~~VID~ 91 (339)
T TIGR01296 53 --EAK--------IESFEGIDIALFSAGGSVSKEFAPKA-AKCGAIVIDN 91 (339)
T ss_pred --eCC--------hHHhcCCCEEEECCCHHHHHHHHHHH-HHCCCEEEEC
Confidence 111 12247899999999999888877654 3345556653
No 299
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=78.15 E-value=3.4 Score=45.85 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=27.5
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
.+.++++.|+|.|.||.++|+.+. |++ -+|...|
T Consensus 143 ~l~gktvGIiG~GrIG~avA~r~~--~Fg----m~v~y~~ 176 (324)
T COG1052 143 DLRGKTLGIIGLGRIGQAVARRLK--GFG----MKVLYYD 176 (324)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHh--cCC----CEEEEEC
Confidence 588999999999999999999988 552 1555554
No 300
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=78.11 E-value=2.2 Score=47.10 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=29.3
Q ss_pred cEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 214 KVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 214 ~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
||.|||+ |.+|+.++-.|+..|++ .+|.|+|-+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~----~elvL~Di~ 34 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYV----SELSLYDIA 34 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCC----cEEEEecCC
Confidence 6899999 99999999999999984 579999854
No 301
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=78.07 E-value=1.6 Score=49.00 Aligned_cols=41 Identities=29% Similarity=0.570 Sum_probs=34.7
Q ss_pred cccccchhHHHhhhhHHHHHHHhhcCccccccccc-cccccc
Q 003715 136 ARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFF-YFDSVE 176 (800)
Q Consensus 136 ~~~el~Pv~AiiGGivaQEVIKait~k~~Pi~q~~-~~d~~~ 176 (800)
..+-+.|+.+++|++.|.|+||.++|...|+.+-+ .||..+
T Consensus 187 ~~gv~g~~~~~~g~~~a~e~ik~l~g~~~~l~~~l~~~d~~~ 228 (355)
T PRK05597 187 QAGVLGPVVGVVGSAMAMEALKLITGVGTPLIGKLGYYDSLD 228 (355)
T ss_pred ccCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCC
Confidence 35679999999999999999999999988887554 688754
No 302
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=78.03 E-value=1.9 Score=47.02 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=27.5
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
.+|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~------~v~i~E~~~ 34 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGI------DVTIIERRP 34 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTC------EEEEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHhccc------ccccchhcc
Confidence 369999999999999999999999 788888654
No 303
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=78.02 E-value=6.8 Score=43.82 Aligned_cols=108 Identities=15% Similarity=0.223 Sum_probs=62.8
Q ss_pred cCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEE
Q 003715 212 EAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 290 (800)
Q Consensus 212 ~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~ 290 (800)
..||+|||+ |.+|.|+++.|...|. +..++..+ ......|+.=.. .+.++.+.
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~h---P~~~l~~l---------------as~rsaGk~~~~--------~~~~~~v~ 60 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDF---PYSSLKML---------------ASARSAGKKVTF--------EGRDYTVE 60 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCC---CcceEEEE---------------EccCCCCCeeee--------cCceeEEE
Confidence 368999995 8899999999998665 22455443 222233332111 01111111
Q ss_pred EeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEec-ccCcccceEEEeCCc
Q 003715 291 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG-TLGAKCNTQMVIPHL 358 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg-~~G~~G~v~~iip~~ 358 (800)
. +. .+-+.++|+|+.|+.+-.++.++.+. ...++.+||.+ ..-+.-.+..++|.+
T Consensus 61 ~----~~--------~~~~~~~D~vf~a~p~~~s~~~~~~~-~~~g~~VIDlS~~fR~~~~~p~~vPEv 116 (344)
T PLN02383 61 E----LT--------EDSFDGVDIALFSAGGSISKKFGPIA-VDKGAVVVDNSSAFRMEEGVPLVIPEV 116 (344)
T ss_pred e----CC--------HHHHcCCCEEEECCCcHHHHHHHHHH-HhCCCEEEECCchhhcCCCCceECCCc
Confidence 1 11 12247899999999998888887754 34678888643 343333344555544
No 304
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=78.02 E-value=2 Score=47.04 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=27.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.+|.|||+|.+|+.++..|+..|. .++++|.+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~------~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGH------DVTLWARD 33 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------EEEEEECC
Confidence 379999999999999999999987 67887753
No 305
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.00 E-value=4.8 Score=44.02 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=30.5
Q ss_pred HHHcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 209 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
.+++++|+||| .|.+|..++.+|...|. .+++.+
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~------tVtv~~ 189 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA------TVTIAH 189 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCC------EEEEEC
Confidence 47899999999 89999999999999997 777774
No 306
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=77.92 E-value=5.4 Score=44.38 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=52.8
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEE
Q 003715 213 AKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 291 (800)
Q Consensus 213 ~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~ 291 (800)
.||+|+|+ |.+|.++++.|+..|. +..++..+ .+..+.|+.=. ++ ...+..
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~h---p~~~l~~l---------------~s~~~~g~~l~---------~~-g~~i~v 53 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNF---PVDKLRLL---------------ASARSAGKELS---------FK-GKELKV 53 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC---CcceEEEE---------------EccccCCCeee---------eC-CceeEE
Confidence 58999995 8999999999998765 11233332 22223333210 11 111111
Q ss_pred eeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEE
Q 003715 292 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLE 341 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~ 341 (800)
. .+. ..-|.+.|+||.|+....++.+..+.. ..+..+|+
T Consensus 54 ~--d~~--------~~~~~~vDvVf~A~g~g~s~~~~~~~~-~~G~~VID 92 (334)
T PRK14874 54 E--DLT--------TFDFSGVDIALFSAGGSVSKKYAPKAA-AAGAVVID 92 (334)
T ss_pred e--eCC--------HHHHcCCCEEEECCChHHHHHHHHHHH-hCCCEEEE
Confidence 1 111 112478999999999998888777643 34556665
No 307
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=77.83 E-value=1.8 Score=47.98 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=26.8
Q ss_pred HHHHcCcEEEEcCCchHHHHHHHHHHhcc
Q 003715 208 KKLEEAKVFVVGSGALGCEFLKNLALMGV 236 (800)
Q Consensus 208 ~~L~~~~VlIvG~GgiG~evlknLal~Gv 236 (800)
..|++++|.|||+|.+|..++++|..+|+
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~ 41 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV 41 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCC
Confidence 46788899999999999999999999998
No 308
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=77.81 E-value=8 Score=43.22 Aligned_cols=36 Identities=14% Similarity=0.015 Sum_probs=27.9
Q ss_pred hccCCCEEEEccCCHHHHHHHhhhcccccccEEEecc
Q 003715 308 FWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGT 344 (800)
Q Consensus 308 f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~ 344 (800)
.+.+.|+|++|+....++.... .+..+|+++|+.+.
T Consensus 75 l~~~vDVVIdaT~~~~~~e~a~-~~~~aGk~VI~~~~ 110 (341)
T PRK04207 75 LLEKADIVVDATPGGVGAKNKE-LYEKAGVKAIFQGG 110 (341)
T ss_pred hhccCCEEEECCCchhhHHHHH-HHHHCCCEEEEcCC
Confidence 4468999999998876666554 67778899998765
No 309
>PRK06057 short chain dehydrogenase; Provisional
Probab=77.80 E-value=1.7 Score=45.60 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=29.9
Q ss_pred HHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 209 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
++.+++|+|+|+ |+||..+++.|+..|. +++++|.
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~------~v~~~~r 39 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA------TVVVGDI 39 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC------EEEEEeC
Confidence 366789999996 9999999999999997 6777753
No 310
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=77.77 E-value=2 Score=48.71 Aligned_cols=32 Identities=34% Similarity=0.496 Sum_probs=29.3
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
+|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~------~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH------EVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC------EEEEEeCCC
Confidence 79999999999999999999997 899998763
No 311
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=77.73 E-value=1.1 Score=51.40 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=32.1
Q ss_pred hhhcCHHHH----HHHHcCcEEEEcCCchHHHHHHHHHHhcc
Q 003715 199 ISVFGSKLQ----KKLEEAKVFVVGSGALGCEFLKNLALMGV 236 (800)
Q Consensus 199 i~l~G~~~q----~~L~~~~VlIvG~GgiG~evlknLal~Gv 236 (800)
-++|+.+.. ..|++++|+|||+|++|...+-||--+|+
T Consensus 19 ~r~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGv 60 (487)
T PRK05225 19 CRFMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGL 60 (487)
T ss_pred ceecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccc
Confidence 355665544 78999999999999999999999888888
No 312
>PRK07102 short chain dehydrogenase; Provisional
Probab=77.72 E-value=8.2 Score=40.06 Aligned_cols=32 Identities=19% Similarity=0.458 Sum_probs=26.8
Q ss_pred CcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 213 AKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
++|+|.| .|+||.++++.|+..|. +++++|.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~------~Vi~~~r~ 34 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA------RLYLAARD 34 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC------EEEEEeCC
Confidence 4789998 59999999999999997 67777643
No 313
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=77.59 E-value=1.7 Score=49.46 Aligned_cols=41 Identities=34% Similarity=0.597 Sum_probs=34.8
Q ss_pred ccccchhHHHhhhhHHHHHHHhhcCcccccc-cccccccccc
Q 003715 137 RAVLNPMAAMFGGIVGQEVVKACSGKFHPLL-QFFYFDSVES 177 (800)
Q Consensus 137 ~~el~Pv~AiiGGivaQEVIKait~k~~Pi~-q~~~~d~~~~ 177 (800)
.|-+.|+++++|++.|+|+||.|+|.-.|+. ..+.||..+.
T Consensus 206 ~gv~g~~~~~~g~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~ 247 (392)
T PRK07878 206 GGVLGVLCASIGSIMGTEAIKLITGIGEPLLGRLMVYDALEM 247 (392)
T ss_pred CCccchHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCC
Confidence 4679999999999999999999999888875 5667887553
No 314
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=77.53 E-value=7.8 Score=40.31 Aligned_cols=33 Identities=33% Similarity=0.492 Sum_probs=27.6
Q ss_pred HHcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+++++|+|.| .|++|.++++.|+..|. ++.+++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~------~v~~~~ 35 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA------KVVIAD 35 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------eEEEEe
Confidence 3467899998 59999999999999987 677764
No 315
>PRK05442 malate dehydrogenase; Provisional
Probab=77.49 E-value=2 Score=47.65 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=29.2
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcccC-CCCcceeecC
Q 003715 213 AKVFVVGS-GALGCEFLKNLALMGVSC-GNQGKLTITD 248 (800)
Q Consensus 213 ~~VlIvG~-GgiG~evlknLal~Gv~~-~~~g~i~liD 248 (800)
.||.|||+ |.+|+.+|-.|+..|++. +..-+|.|+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiD 42 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLE 42 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEe
Confidence 58999998 999999999999999951 1111789987
No 316
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=77.47 E-value=4.2 Score=43.53 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=27.2
Q ss_pred EEEEcC-CchHHHHHHHHHHhc--ccCCCCcceeecCCC
Q 003715 215 VFVVGS-GALGCEFLKNLALMG--VSCGNQGKLTITDDD 250 (800)
Q Consensus 215 VlIvG~-GgiG~evlknLal~G--v~~~~~g~i~liD~D 250 (800)
|.|||+ |.+|+.++..|++.| .. .+|+++|-+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~----~el~L~D~~ 35 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLA----IELVLYDID 35 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcc----eEEEEEeCC
Confidence 579999 999999999999999 42 589999843
No 317
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.36 E-value=2.2 Score=47.06 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=30.0
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 213 AKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.||.|||+ |.+|+.+|-.|+..|++ .+|.|+|-.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~----~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLV----SELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC----cEEEEEecC
Confidence 37999999 99999999999999985 689999854
No 318
>PRK07856 short chain dehydrogenase; Provisional
Probab=77.32 E-value=5.2 Score=41.85 Aligned_cols=36 Identities=17% Similarity=0.345 Sum_probs=30.1
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
+.+++++|.|+ ||||.++++.|+..|. +++++|.+.
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~------~v~~~~r~~ 40 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA------TVVVCGRRA 40 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEeCCh
Confidence 45788999985 8999999999999997 788887653
No 319
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=77.27 E-value=8.8 Score=42.38 Aligned_cols=33 Identities=27% Similarity=0.677 Sum_probs=28.6
Q ss_pred HcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 211 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
.+.+|+|.|+|++|...+..+..+|. .+++++|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~-----~~Vi~~~ 201 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGA-----AEIVCAD 201 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-----cEEEEEe
Confidence 46789999999999999998888898 6787775
No 320
>PRK05717 oxidoreductase; Validated
Probab=77.23 E-value=3 Score=43.80 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=29.3
Q ss_pred HHcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 210 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+++++|+|.| .|+||.++++.|+..|. +++++|.+
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~------~v~~~~~~ 43 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGW------QVVLADLD 43 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCC------EEEEEcCC
Confidence 4567899998 59999999999999996 78888743
No 321
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=77.22 E-value=9 Score=46.66 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=33.0
Q ss_pred HHHHHHHHcCcEEEEc-CCchHHHHHHHHHHh-cccCCCCcceeecCCC
Q 003715 204 SKLQKKLEEAKVFVVG-SGALGCEFLKNLALM-GVSCGNQGKLTITDDD 250 (800)
Q Consensus 204 ~~~q~~L~~~~VlIvG-~GgiG~evlknLal~-Gv~~~~~g~i~liD~D 250 (800)
......-++++|+|.| +|-||+.+++.|... |. +++.+|..
T Consensus 307 ~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~------~V~~l~r~ 349 (660)
T PRK08125 307 KPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNY------EVYGLDIG 349 (660)
T ss_pred cchhhhhcCCEEEEECCCchHHHHHHHHHHhCCCc------EEEEEeCC
Confidence 4456677888999999 599999999999986 55 77777753
No 322
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.22 E-value=2.2 Score=47.08 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=28.1
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.+|.|+|+|++|+.++..|+..|. +++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~------~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV------PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC------eEEEEeCC
Confidence 479999999999999999999997 68887643
No 323
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=77.17 E-value=1.7 Score=49.11 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=34.0
Q ss_pred ccccchhHHHhhhhHHHHHHHhhcCcccccc-ccccccccc
Q 003715 137 RAVLNPMAAMFGGIVGQEVVKACSGKFHPLL-QFFYFDSVE 176 (800)
Q Consensus 137 ~~el~Pv~AiiGGivaQEVIKait~k~~Pi~-q~~~~d~~~ 176 (800)
.|-+.|+.+++|++.|+|+||.++|.-.|+. +.+.||..+
T Consensus 299 ~gv~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~ 339 (376)
T PRK08762 299 AGVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALA 339 (376)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCC
Confidence 4578899999999999999999999988875 666788754
No 324
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.03 E-value=1.9 Score=50.15 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=30.8
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+.+.+|+|+|+|++|.++|..|...|. +++++|..
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~------~V~~~d~~ 48 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA------RVTVVDDG 48 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 456789999999999999999999998 78998854
No 325
>PRK06398 aldose dehydrogenase; Validated
Probab=77.00 E-value=5.8 Score=41.84 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=30.0
Q ss_pred HHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 209 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 209 ~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.+++++++|.|+ ||||.++++.|+..|. ++++++.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~------~Vi~~~r~ 39 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS------NVINFDIK 39 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC------eEEEEeCC
Confidence 356788999985 7999999999999997 77777754
No 326
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=76.99 E-value=2.2 Score=47.06 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=27.2
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+|.|+|+|++|+.++..|+..|. ++++++.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~------~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI------SVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC------eEEEEecC
Confidence 69999999999999999999996 67787643
No 327
>PRK07109 short chain dehydrogenase; Provisional
Probab=76.86 E-value=5.1 Score=44.37 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=28.1
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.+++|+|.|+ ||||.++++.|+..|. ++++++
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~------~Vvl~~ 39 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGA------KVVLLA 39 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEE
Confidence 45678999985 9999999999999997 677765
No 328
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=76.73 E-value=5.5 Score=42.05 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=28.4
Q ss_pred HHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 209 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
++++++++|.|+ |+||.++++.|+..|. +++++|
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~------~vv~~~ 41 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGA------TIVFND 41 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC------eEEEEe
Confidence 456778999985 8999999999999997 677765
No 329
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=76.70 E-value=2.1 Score=46.84 Aligned_cols=34 Identities=24% Similarity=0.505 Sum_probs=30.3
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+.+++|+|+|+|++|..+++.|..+|. +++++|.
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga------~V~v~~r 183 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA------NVTVGAR 183 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC------EEEEEEC
Confidence 567899999999999999999999997 7888763
No 330
>PRK07774 short chain dehydrogenase; Provisional
Probab=76.49 E-value=3 Score=43.38 Aligned_cols=34 Identities=24% Similarity=0.509 Sum_probs=28.9
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+++++++|.|+ |+||.++++.|+..|. +++++|.
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~------~vi~~~r 38 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGA------SVVVADI 38 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeC
Confidence 56678999996 9999999999999997 6777653
No 331
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=76.47 E-value=3.1 Score=49.57 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=30.5
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
+.+|+|+|+|.+|..+++.|...|. .++++|.|.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~------~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI------PLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC------CEEEEECCH
Confidence 4689999999999999999999998 889998654
No 332
>PLN03075 nicotianamine synthase; Provisional
Probab=76.45 E-value=94 Score=34.12 Aligned_cols=54 Identities=20% Similarity=0.004 Sum_probs=32.4
Q ss_pred CcchhhhhhcCHHHH--HHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 193 SRYDAQISVFGSKLQ--KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 193 ~Rydrqi~l~G~~~q--~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.+|.+..++=|.-.. ......+|+-||||..|-..+-.++..+ ++|+++=+|.|
T Consensus 103 ~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~----p~~~~~giD~d 158 (296)
T PLN03075 103 NNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHL----PTTSFHNFDID 158 (296)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcC----CCCEEEEEeCC
Confidence 566655554332221 1227899999999988755444444343 34688888754
No 333
>PRK12743 oxidoreductase; Provisional
Probab=76.39 E-value=6.9 Score=41.09 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=24.7
Q ss_pred cCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeec
Q 003715 212 EAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTIT 247 (800)
Q Consensus 212 ~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~li 247 (800)
.++|+|.| .|+||.++++.|+..|. ++.++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~------~V~~~ 32 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF------DIGIT 32 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC------EEEEE
Confidence 45788888 48999999999999997 56554
No 334
>PRK08374 homoserine dehydrogenase; Provisional
Probab=76.11 E-value=8.4 Score=42.94 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=24.1
Q ss_pred cCCCEEEEccCCHHHHHHHhhhcccccccEEEec
Q 003715 310 ENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG 343 (800)
Q Consensus 310 ~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg 343 (800)
...|+||+++....++.+.. .|...+++++.+.
T Consensus 90 ~~~DVvVd~t~~~~a~~~~~-~al~~G~~VVtan 122 (336)
T PRK08374 90 IDADIVVDVTNDKNAHEWHL-EALKEGKSVVTSN 122 (336)
T ss_pred CCCCEEEECCCcHHHHHHHH-HHHhhCCcEEECC
Confidence 36899999997666655544 5667889888544
No 335
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=76.04 E-value=2.4 Score=47.27 Aligned_cols=33 Identities=33% Similarity=0.474 Sum_probs=29.8
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcc
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVI 252 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~I 252 (800)
.|+|||+|-+|+.+|..|++.|. +++|+|...+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~------~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK------KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC------eEEEEeccCC
Confidence 58999999999999999999997 7999998654
No 336
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=75.98 E-value=6 Score=41.39 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=27.8
Q ss_pred HHcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
|.+++++|.| .||||..+++.|+..|. +++++|
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~------~vvl~~ 40 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA------EIIIND 40 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC------EEEEEc
Confidence 5677899998 58999999999999997 677764
No 337
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=75.96 E-value=11 Score=41.47 Aligned_cols=47 Identities=6% Similarity=0.078 Sum_probs=32.2
Q ss_pred ccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccCcccceEEEeCCcc
Q 003715 309 WENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLT 359 (800)
Q Consensus 309 ~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v~~iip~~t 359 (800)
|.+.|+|++|+.+...+. ....+...|+.+|+-.... .+.+++|.+.
T Consensus 68 ~~dIDiVf~AT~a~~H~e-~a~~a~eaGk~VID~sPA~---~~PlvVP~VN 114 (302)
T PRK08300 68 FDDIDIVFDATSAGAHVR-HAAKLREAGIRAIDLTPAA---IGPYCVPAVN 114 (302)
T ss_pred CCCCCEEEECCCHHHHHH-HHHHHHHcCCeEEECCccc---cCCcccCcCC
Confidence 467999999997754444 4556788899888644333 4466777654
No 338
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=75.95 E-value=2.1 Score=48.78 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=31.5
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
+.+.+|+|+|+|.+|..+++.+..+|. +++++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga------~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA------RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC------EEEEEeCCh
Confidence 678999999999999999999999998 688887443
No 339
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=75.92 E-value=4.4 Score=45.65 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=43.8
Q ss_pred EEEEcCCchHHHHHHHH--HHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEE
Q 003715 215 VFVVGSGALGCEFLKNL--ALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 291 (800)
Q Consensus 215 VlIvG~GgiG~evlknL--al~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~ 291 (800)
|+|||+|.-|+.+|..| +..|. ++.|+|...--.-.-+|-..|-..+++. ..+.+....+...|..
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~------~Vllid~~~~~~~~~~~tW~~~~~~~~~-----~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGL------SVLLIDPKPKPPWPNDRTWCFWEKDLGP-----LDSLVSHRWSGWRVYF 69 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCC------EEEEEcCCccccccCCcccccccccccc-----hHHHHheecCceEEEe
Confidence 78999999999999999 66665 9999998654422344444455545555 3444455555554443
No 340
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=75.85 E-value=9.2 Score=44.08 Aligned_cols=110 Identities=18% Similarity=0.136 Sum_probs=68.7
Q ss_pred CcEEEEcCCch-HHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEE
Q 003715 213 AKVFVVGSGAL-GCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 291 (800)
Q Consensus 213 ~~VlIvG~Ggi-G~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~ 291 (800)
.||.|||+|+. +.++++.|+...- .-+.++|.++|-|. ..|.+ + ...+.+.+++..++++++.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~-~l~~~ei~L~Did~---~Rl~~--------v----~~l~~~~~~~~g~~~~v~~ 64 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPE-ELPISEVTLYDIDE---ERLDI--------I----LTIAKRYVEEVGADIKFEK 64 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChh-hCCCCEEEEEcCCH---HHHHH--------H----HHHHHHHHHhhCCCeEEEE
Confidence 37999999985 3366666664431 11238999998442 22211 1 1234455556677888777
Q ss_pred eeccCCcchhcccchhhccCCCEEEEcc--CCHHHHHHHhhhcccccccEEEecccCcccc
Q 003715 292 LQIRANPETENVFNDTFWENLNVVVNAL--DNVNARLYIDQRCLYFQKPLLESGTLGAKCN 350 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~--Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~ 350 (800)
...+ .+-++++|+||++. ...++|..-.+.+.+||+-= .-|.|..|-
T Consensus 65 ttD~----------~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~g--qeT~G~GG~ 113 (425)
T cd05197 65 TMDL----------EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIG--QETVGPGGT 113 (425)
T ss_pred eCCH----------HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCccc--ccccCcchh
Confidence 6532 24468999999885 56677776667777777533 567777764
No 341
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=75.85 E-value=6.1 Score=43.22 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=27.4
Q ss_pred HcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 211 EEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 211 ~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.+++|+|.| .||||.++++.|+..|. ++++++.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~------~V~~~~r 38 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW------HVIMACR 38 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC------EEEEEEC
Confidence 456788998 59999999999999997 6777753
No 342
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=75.78 E-value=2.8 Score=41.17 Aligned_cols=102 Identities=24% Similarity=0.284 Sum_probs=56.5
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcc--cccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEE
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVI--EKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 291 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~I--e~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~ 291 (800)
||.|+|+|..|+.+|..|+..|. ++++...|.= +.=|-+|+- ....|++++..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~------~V~l~~~~~~~~~~i~~~~~n-------------------~~~~~~~~l~~ 55 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH------EVTLWGRDEEQIEEINETRQN-------------------PKYLPGIKLPE 55 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE------EEEEETSCHHHHHHHHHHTSE-------------------TTTSTTSBEET
T ss_pred CEEEECcCHHHHHHHHHHHHcCC------EEEEEeccHHHHHHHHHhCCC-------------------CCCCCCcccCc
Confidence 68999999999999999999996 7888765531 111111110 00112222211
Q ss_pred eeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhccc--ccccEEEecccCc
Q 003715 292 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLY--FQKPLLESGTLGA 347 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~--~~~pli~sg~~G~ 347 (800)
.. .++.+- .+.+++.|+|+-++-....|..+.+.... .+.+++ ..+-|+
T Consensus 56 ~i-~~t~dl-----~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii-~~~KG~ 106 (157)
T PF01210_consen 56 NI-KATTDL-----EEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIII-SATKGF 106 (157)
T ss_dssp TE-EEESSH-----HHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEE-ETS-SE
T ss_pred cc-ccccCH-----HHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEE-EecCCc
Confidence 00 111111 23568999999999888888877776653 344555 344444
No 343
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=75.77 E-value=2.5 Score=42.04 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=28.5
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
.|..++++|+|-|-+|.-+|+.|..+|. +++++|-|.
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga------~V~V~e~DP 56 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGA------RVTVTEIDP 56 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-------EEEEE-SSH
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCC------EEEEEECCh
Confidence 5778899999999999999999999998 899998654
No 344
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=75.75 E-value=8.5 Score=42.93 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=57.1
Q ss_pred HcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeE
Q 003715 211 EEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 289 (800)
Q Consensus 211 ~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i 289 (800)
+..+|.|||+ |.+|.|+++.|+.... |..+|..+-.+ ...|+.=. +. .-++.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~h---P~~~l~~laS~---------------~saG~~~~------~~--~~~~~v 56 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQF---PVGELYALASE---------------ESAGETLR------FG--GKSVTV 56 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCC---CceEEEEEEcc---------------CcCCceEE------EC--CcceEE
Confidence 3568999997 9999999999998322 22677665322 23333211 00 012222
Q ss_pred EEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEe
Q 003715 290 EALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLES 342 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~s 342 (800)
+. +. ..-|.++|+|+.|+..-.++.+..+. ...++.+||-
T Consensus 57 ~~----~~--------~~~~~~~Dvvf~a~p~~~s~~~~~~~-~~~g~~VIDl 96 (336)
T PRK08040 57 QD----AA--------EFDWSQAQLAFFVAGREASAAYAEEA-TNAGCLVIDS 96 (336)
T ss_pred Ee----Cc--------hhhccCCCEEEECCCHHHHHHHHHHH-HHCCCEEEEC
Confidence 21 11 11246899999999988888777765 4467888863
No 345
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=75.51 E-value=2.6 Score=45.96 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=30.4
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCccc
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIE 253 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie 253 (800)
.|+|||+|-+|+.+|-.|++.|. +++|+|.+.+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~------~V~l~e~~~~~ 34 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH------SVTLLERGDIG 34 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS------EEEEEESSSTT
T ss_pred CEEEECcCHHHHHHHHHHHHCCC------eEEEEeecccc
Confidence 38999999999999999999998 99999987543
No 346
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=75.50 E-value=2.3 Score=48.35 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=28.6
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+|+|||+|..|+..|..|++.|+ ++.|+|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGI------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCC------cEEEEecC
Confidence 79999999999999999999999 78898854
No 347
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=75.47 E-value=2.3 Score=49.26 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=31.6
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.|.+++|+|||+|.+|..+++.|...|. +++++|.|
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga------~ViV~e~d 286 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA------RVVVTEID 286 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 5789999999999999999999998887 67787644
No 348
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=75.45 E-value=2.5 Score=45.61 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=27.2
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+|.|||+|.+|+.+++.|...|. +++++|.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~------~V~~~d~ 31 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH------TVYGVSR 31 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC------EEEEEEC
Confidence 79999999999999999999987 7888874
No 349
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=75.38 E-value=7.1 Score=42.28 Aligned_cols=99 Identities=17% Similarity=0.245 Sum_probs=53.2
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEE
Q 003715 213 AKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 291 (800)
Q Consensus 213 ~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~ 291 (800)
+||+|+|+ |-+|+.+++.|...|. .+..++.. .-|+. ..+.+.+.+.+..|++-|..
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~------~v~~~~r~--------------~~dl~--d~~~~~~~~~~~~pd~Vin~ 58 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY------EVIATSRS--------------DLDLT--DPEAVAKLLEAFKPDVVINC 58 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE------EEEEESTT--------------CS-TT--SHHHHHHHHHHH--SEEEE-
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC------EEEEeCch--------------hcCCC--CHHHHHHHHHHhCCCeEecc
Confidence 48999995 9999999999998886 44444433 11332 24566777777777754443
Q ss_pred eeccCCcch--hcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEeccc
Q 003715 292 LQIRANPET--ENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTL 345 (800)
Q Consensus 292 ~~~~v~~~~--~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~ 345 (800)
- .+..-. +..- +..+ .-|..+-..+.+.|...+.++|.-.|.
T Consensus 59 a--a~~~~~~ce~~p-~~a~---------~iN~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 59 A--AYTNVDACEKNP-EEAY---------AINVDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp -------HHHHHHSH-HHHH---------HHHTHHHHHHHHHHHHCT-EEEEEEEG
T ss_pred c--eeecHHhhhhCh-hhhH---------HHhhHHHHHHHHHHHHcCCcEEEeecc
Confidence 2 111000 0000 0000 012333456778999999999865554
No 350
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=75.25 E-value=2.4 Score=47.96 Aligned_cols=35 Identities=29% Similarity=0.450 Sum_probs=30.4
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+...+|+|+|+|.+|..+++.|..+|+ +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa------~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA------TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC------eEEEEECC
Confidence 455689999999999999999999998 68888753
No 351
>PRK06185 hypothetical protein; Provisional
Probab=75.23 E-value=2.7 Score=47.60 Aligned_cols=35 Identities=29% Similarity=0.411 Sum_probs=31.1
Q ss_pred HcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 211 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
....|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~------~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGV------DVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC------cEEEEecCC
Confidence 34679999999999999999999998 899999763
No 352
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=75.18 E-value=2.8 Score=46.59 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=30.2
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcc
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVI 252 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~I 252 (800)
.|+|||+|-+|+.+|..|++.|. +++|+|.+.+
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~------~V~vle~~~~ 34 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGL------SVTVIERSSR 34 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC------eEEEEeCCCC
Confidence 68999999999999999999997 7999998765
No 353
>PLN02494 adenosylhomocysteinase
Probab=75.16 E-value=2.5 Score=48.95 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=31.0
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+.+++|+|+|+|.+|..+++.+...|+ +++++|.|
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga------~VIV~e~d 286 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA------RVIVTEID 286 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 678999999999999999999998887 68888754
No 354
>PRK15076 alpha-galactosidase; Provisional
Probab=75.16 E-value=10 Score=43.84 Aligned_cols=107 Identities=17% Similarity=0.155 Sum_probs=57.2
Q ss_pred CcEEEEcCCchHHHHHH--HHH-HhcccCCCCcceeecCCCcccccCCccccccccCccCccH-HHH-HHHHHHHHCCCC
Q 003715 213 AKVFVVGSGALGCEFLK--NLA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK-STV-AASAAALINPHL 287 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlk--nLa-l~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~K-a~v-a~~~l~~~np~v 287 (800)
.||.|||+|++|...+- .++ ..++. .++|+|+|-|. .| .+ +.. +.+.+....+.+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~---~~evvLvDid~------er-----------~~~~~~l~~~~~~~~~~~~ 61 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALR---DAEIALMDIDP------ER-----------LEESEIVARKLAESLGASA 61 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCC---CCEEEEECCCH------HH-----------HHHHHHHHHHHHHhcCCCe
Confidence 48999999999855443 555 33331 14899998432 11 11 222 333334444555
Q ss_pred eEEEeeccCCcchhcccchhhccCCCEEEEccCCH--HHHHHHh-hhcccccccEEEecccCccc
Q 003715 288 NTEALQIRANPETENVFNDTFWENLNVVVNALDNV--NARLYID-QRCLYFQKPLLESGTLGAKC 349 (800)
Q Consensus 288 ~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~--~ar~~v~-~~c~~~~~pli~sg~~G~~G 349 (800)
+|+..... .+-++++|+||.+.--. ++++..+ +...+||+--=-.-+.|..|
T Consensus 62 ~i~~ttD~----------~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG 116 (431)
T PRK15076 62 KITATTDR----------REALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGG 116 (431)
T ss_pred EEEEECCH----------HHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccc
Confidence 55543211 13357899999887543 4444344 45566665311114555555
No 355
>PRK06841 short chain dehydrogenase; Provisional
Probab=75.07 E-value=2.7 Score=43.99 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=28.8
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+.+++|+|.|+ |+||.++++.|+..|. ++++++.
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~------~Vi~~~r 47 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGA------RVALLDR 47 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeC
Confidence 56789999995 9999999999999997 6777653
No 356
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=74.99 E-value=9.7 Score=42.21 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=58.6
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHH-HHHHHHHHHCCCCeEE
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKST-VAASAAALINPHLNTE 290 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~-va~~~l~~~np~v~i~ 290 (800)
...|.|+|+||+|-........+|. ++|+-+|.+. +.-.+.|+|-.+. .=.+|-. -+.+.+.+
T Consensus 186 G~tvaV~GlGgVGlaaI~gA~~agA-----~~IiAvD~~~-~Kl~~A~~fGAT~--~vn~~~~~~vv~~i~~-------- 249 (366)
T COG1062 186 GDTVAVFGLGGVGLAAIQGAKAAGA-----GRIIAVDINP-EKLELAKKFGATH--FVNPKEVDDVVEAIVE-------- 249 (366)
T ss_pred CCeEEEEeccHhHHHHHHHHHHcCC-----ceEEEEeCCH-HHHHHHHhcCCce--eecchhhhhHHHHHHH--------
Confidence 5679999999999999999999999 8999997432 1222333332221 1111111 01222222
Q ss_pred EeeccCCcchhcccchhhcc-CCCEEEEccCCHHHHHHHhhhccccccc
Q 003715 291 ALQIRANPETENVFNDTFWE-NLNVVVNALDNVNARLYIDQRCLYFQKP 338 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~-~~dvVi~a~Dn~~ar~~v~~~c~~~~~p 338 (800)
... ..|.+|+|+.|.++-+.--+.|.+-+.-
T Consensus 250 -----------------~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~ 281 (366)
T COG1062 250 -----------------LTDGGADYAFECVGNVEVMRQALEATHRGGTS 281 (366)
T ss_pred -----------------hcCCCCCEEEEccCCHHHHHHHHHHHhcCCeE
Confidence 223 7899999999999766555566555553
No 357
>PRK12744 short chain dehydrogenase; Provisional
Probab=74.83 E-value=7.6 Score=40.73 Aligned_cols=27 Identities=30% Similarity=0.478 Sum_probs=23.9
Q ss_pred HHcCcEEEEc-CCchHHHHHHHHHHhcc
Q 003715 210 LEEAKVFVVG-SGALGCEFLKNLALMGV 236 (800)
Q Consensus 210 L~~~~VlIvG-~GgiG~evlknLal~Gv 236 (800)
|++++|+|.| .|+||.++++.|+..|.
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~ 33 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGA 33 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC
Confidence 5567899998 58999999999999997
No 358
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=74.75 E-value=4.3 Score=46.87 Aligned_cols=42 Identities=29% Similarity=0.462 Sum_probs=35.1
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCc
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLS 258 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLn 258 (800)
+.+++|+|+|.|..|..+++.|...|. .+++.|.+.-. .+..
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~------~v~v~D~~~~~-~~~~ 46 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGA------EVTVSDDRPAP-EGLA 46 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCC------eEEEEcCCCCc-cchh
Confidence 348899999999999999999999998 89999866554 4433
No 359
>PRK07411 hypothetical protein; Validated
Probab=74.48 E-value=2.3 Score=48.43 Aligned_cols=41 Identities=20% Similarity=0.380 Sum_probs=34.5
Q ss_pred cccccchhHHHhhhhHHHHHHHhhcCcccccc-ccccccccc
Q 003715 136 ARAVLNPMAAMFGGIVGQEVVKACSGKFHPLL-QFFYFDSVE 176 (800)
Q Consensus 136 ~~~el~Pv~AiiGGivaQEVIKait~k~~Pi~-q~~~~d~~~ 176 (800)
..|.+.|+.+++|.+.|+|+||.|+|...|+. +.++||+.+
T Consensus 197 ~~gvlg~~~~~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~ 238 (390)
T PRK07411 197 EGGVLGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALD 238 (390)
T ss_pred cCCcCcchHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEECCC
Confidence 34689999999999999999999999887765 566789754
No 360
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=74.44 E-value=2.6 Score=47.38 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=30.1
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
..|+|||+|..|+.+|-.|++.|+ +++|+|.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~------~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGA------SVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCC------eEEEEeCCC
Confidence 479999999999999999999998 899998764
No 361
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=74.36 E-value=7 Score=41.98 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHh
Q 003715 213 AKVFVVGSGALGCEFLKNLALM 234 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~ 234 (800)
.||.|||||.+|..+++.|...
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~ 23 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD 23 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC
Confidence 4899999999999999998775
No 362
>PRK08818 prephenate dehydrogenase; Provisional
Probab=74.29 E-value=7.9 Score=43.76 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=28.1
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHh-cccCCCCcceeecCC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALM-GVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~-Gv~~~~~g~i~liD~ 249 (800)
+.+.+|+|||. |.+|..+++.|... |. +|+.+|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~------~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQL------EVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCC------EEEEEcC
Confidence 35679999999 99999999999864 44 7888775
No 363
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=74.26 E-value=2.8 Score=49.88 Aligned_cols=35 Identities=26% Similarity=0.537 Sum_probs=31.3
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCccc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIE 253 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie 253 (800)
..|+|||+|.+|+.+|..|++.|. +++|+|...+.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~------~V~LlEk~d~~ 41 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGL------RCILVERHDIA 41 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCC------eEEEEECCCCC
Confidence 569999999999999999999998 89999986553
No 364
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.06 E-value=3.1 Score=46.13 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=29.5
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcccCC-CCcceeecCCC
Q 003715 213 AKVFVVGS-GALGCEFLKNLALMGVSCG-NQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~-GgiG~evlknLal~Gv~~~-~~g~i~liD~D 250 (800)
.||+|+|+ |.+|+.++..|+..|++.. ..-.|+|+|-+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 48999999 9999999999999998410 11149999853
No 365
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.03 E-value=6.2 Score=41.38 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=28.7
Q ss_pred HHcCcEEEEcCC---chHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 210 LEEAKVFVVGSG---ALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlIvG~G---giG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
|+.++|+|.|++ |||..+++.|+..|. ++++++..
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~------~vi~~~r~ 40 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI------DIFFTYWS 40 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC------cEEEEcCC
Confidence 456789999984 799999999999997 77777643
No 366
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=74.00 E-value=3.4 Score=44.13 Aligned_cols=42 Identities=21% Similarity=0.430 Sum_probs=32.0
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHh----cccCC-CCcceeecCCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALM----GVSCG-NQGKLTITDDD 250 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~----Gv~~~-~~g~i~liD~D 250 (800)
+|.+.||+++|+|+-|.-+++.|+.+ |+.-. -..+|.++|.+
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~ 68 (255)
T PF03949_consen 22 KLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSK 68 (255)
T ss_dssp -GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETT
T ss_pred CHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEecc
Confidence 58999999999999999999999999 88200 01689999976
No 367
>PRK08862 short chain dehydrogenase; Provisional
Probab=73.97 E-value=7.4 Score=40.49 Aligned_cols=33 Identities=18% Similarity=0.417 Sum_probs=27.6
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.+++++|.|+ +|||.++++.|+..|. ++.+++
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~------~V~~~~ 36 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGA------TLILCD 36 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCC------EEEEEc
Confidence 45678999985 6899999999999998 677765
No 368
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=73.94 E-value=19 Score=33.46 Aligned_cols=48 Identities=8% Similarity=0.087 Sum_probs=30.4
Q ss_pred cCCCEEEEccCCHHHHHHHh--hhcccccccEEEecc-cCcccceEEEeCC
Q 003715 310 ENLNVVVNALDNVNARLYID--QRCLYFQKPLLESGT-LGAKCNTQMVIPH 357 (800)
Q Consensus 310 ~~~dvVi~a~Dn~~ar~~v~--~~c~~~~~pli~sg~-~G~~G~v~~iip~ 357 (800)
.++|+|+.|+.+..+...+. ..+...++.+|+.++ +.....+...+|.
T Consensus 64 ~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s~~~~~~~~~~~~~~~ 114 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSSAFRMDDDVPYGLPE 114 (122)
T ss_pred cCCCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECCccccCCCCceEEcCc
Confidence 48899999998877666432 233467888887553 3333344555554
No 369
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=73.88 E-value=9 Score=42.80 Aligned_cols=34 Identities=18% Similarity=0.026 Sum_probs=25.8
Q ss_pred ccCCCEEEEccCCHHHHHHHhhhcccccccEEEec
Q 003715 309 WENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG 343 (800)
Q Consensus 309 ~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg 343 (800)
+.+.|+|+.|+.+..+..++.. +...++++||.+
T Consensus 66 ~~~vD~Vf~alP~~~~~~~v~~-a~~aG~~VID~S 99 (343)
T PRK00436 66 LAGADVVFLALPHGVSMDLAPQ-LLEAGVKVIDLS 99 (343)
T ss_pred hcCCCEEEECCCcHHHHHHHHH-HHhCCCEEEECC
Confidence 4679999999998777766665 455788888744
No 370
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=73.87 E-value=2.8 Score=51.10 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=30.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
..|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGW------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC------eEEEEecCC
Confidence 589999999999999999999998 799999874
No 371
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.65 E-value=6.9 Score=40.62 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.7
Q ss_pred HcCcEEEEcC-CchHHHHHHHHHHhcc
Q 003715 211 EEAKVFVVGS-GALGCEFLKNLALMGV 236 (800)
Q Consensus 211 ~~~~VlIvG~-GgiG~evlknLal~Gv 236 (800)
.+++++|.|+ |+||.++++.|+..|.
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~ 29 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGY 29 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 4568999985 8999999999999987
No 372
>PRK08605 D-lactate dehydrogenase; Validated
Probab=73.65 E-value=2.7 Score=46.72 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=28.4
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHH-hcccCCCCcceeecCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLAL-MGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal-~Gv~~~~~g~i~liD~ 249 (800)
.|.+++|.|||+|.+|..+++.|+. .|+ ++...|.
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~------~V~~~d~ 178 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGS------DVVAYDP 178 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHhcCCC------EEEEECC
Confidence 5889999999999999999999953 444 5666653
No 373
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=73.65 E-value=3.1 Score=45.74 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=29.4
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.||.|||+|-+|+.+|-.|+..|. +.++++|-
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~-----~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKEL-----ADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeC
Confidence 489999999999999999999998 68999984
No 374
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=73.59 E-value=8.3 Score=42.27 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=27.6
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.+|+|.|+|++|..++..+..+|. .+++++|
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~-----~~vi~~~ 195 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGA-----EDVIGVD 195 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-----CEEEEEC
Confidence 6799999999999999998889998 5477775
No 375
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=73.52 E-value=3.1 Score=40.16 Aligned_cols=30 Identities=23% Similarity=0.531 Sum_probs=26.6
Q ss_pred EEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 215 VFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 215 VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
++|+|+|.+|.++++....+|+ +++++|++
T Consensus 1 L~I~GaG~va~al~~la~~lg~------~v~v~d~r 30 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGF------RVTVVDPR 30 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTE------EEEEEES-
T ss_pred CEEEeCcHHHHHHHHHHHhCCC------EEEEEcCC
Confidence 5799999999999999999999 99999988
No 376
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=73.51 E-value=3.4 Score=44.74 Aligned_cols=44 Identities=20% Similarity=0.388 Sum_probs=34.4
Q ss_pred HHHHcCcEEEEcCCchHHHHHHHHHHh----cccCCC-CcceeecCCCc
Q 003715 208 KKLEEAKVFVVGSGALGCEFLKNLALM----GVSCGN-QGKLTITDDDV 251 (800)
Q Consensus 208 ~~L~~~~VlIvG~GgiG~evlknLal~----Gv~~~~-~g~i~liD~D~ 251 (800)
.+|.+.||+++|+|+-|+.+++.|..+ |++-.. ..+|.++|.+-
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~G 69 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKG 69 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCC
Confidence 367789999999999999999999998 662111 25899998653
No 377
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=73.47 E-value=2.8 Score=49.61 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=29.2
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.+++|+|+|+||+|..++..|+..|+ +|++++
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~------~V~i~n 409 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA------RVVIAN 409 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC------EEEEEc
Confidence 456789999999999999999999997 688875
No 378
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=73.46 E-value=3 Score=46.20 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=28.9
Q ss_pred cEEEEcC-CchHHHHHHHHHHhcccCC-CCcceeecCC
Q 003715 214 KVFVVGS-GALGCEFLKNLALMGVSCG-NQGKLTITDD 249 (800)
Q Consensus 214 ~VlIvG~-GgiG~evlknLal~Gv~~~-~~g~i~liD~ 249 (800)
||.|+|+ |.+|+.++-.|+..|++.. .+-.|+|+|-
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~ 38 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDI 38 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEec
Confidence 6999999 9999999999999999421 2126899873
No 379
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=73.36 E-value=13 Score=40.79 Aligned_cols=78 Identities=21% Similarity=0.292 Sum_probs=57.4
Q ss_pred EEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEee
Q 003715 215 VFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 293 (800)
Q Consensus 215 VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~ 293 (800)
.+|.|+ .|||-+.++-||+-|+ ++.|| + -.+.|-++.++.|.+..+ +++..+.
T Consensus 52 AVVTGaTDGIGKayA~eLAkrG~------nvvLI----------s---------Rt~~KL~~v~kEI~~~~~-vev~~i~ 105 (312)
T KOG1014|consen 52 AVVTGATDGIGKAYARELAKRGF------NVVLI----------S---------RTQEKLEAVAKEIEEKYK-VEVRIIA 105 (312)
T ss_pred EEEECCCCcchHHHHHHHHHcCC------EEEEE----------e---------CCHHHHHHHHHHHHHHhC-cEEEEEE
Confidence 555686 6999999999999999 67775 2 236899999999999998 8888888
Q ss_pred ccCCcchhcccc--hhhccCCC--EEEEcc
Q 003715 294 IRANPETENVFN--DTFWENLN--VVVNAL 319 (800)
Q Consensus 294 ~~v~~~~~~~~~--~~f~~~~d--vVi~a~ 319 (800)
-++....+ .++ .+.+.+.| ++||++
T Consensus 106 ~Dft~~~~-~ye~i~~~l~~~~VgILVNNv 134 (312)
T KOG1014|consen 106 IDFTKGDE-VYEKLLEKLAGLDVGILVNNV 134 (312)
T ss_pred EecCCCch-hHHHHHHHhcCCceEEEEecc
Confidence 77775543 221 23456666 356665
No 380
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=73.22 E-value=3.5 Score=48.57 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=31.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEK 254 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~ 254 (800)
..|+|||.|.+|+.+|..|++.|+ +++|+|.+.+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl------~V~LvEk~d~~~ 42 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGL------SVLLCEQDDLAS 42 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC------eEEEEecCCCCC
Confidence 469999999999999999999999 899999865543
No 381
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=73.17 E-value=5.1 Score=41.71 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=30.4
Q ss_pred HHHcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 209 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 209 ~L~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.+++++|+|.| .|+||..+++.|+..|. +++++|.+
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~------~Vi~~~r~ 45 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA------TVILLGRT 45 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC------cEEEEeCC
Confidence 56788899998 58999999999999886 77887754
No 382
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=73.11 E-value=2.7 Score=46.97 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=34.2
Q ss_pred ccccchhHHHhhhhHHHHHHHhhcCcccccccc-ccccccc
Q 003715 137 RAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQF-FYFDSVE 176 (800)
Q Consensus 137 ~~el~Pv~AiiGGivaQEVIKait~k~~Pi~q~-~~~d~~~ 176 (800)
.+-+.|+.+++|++.|+|+||.++|...++.+- +.||..+
T Consensus 184 ~gv~~p~~~~i~~~~a~ealk~l~g~~~~l~~~l~~~d~~~ 224 (339)
T PRK07688 184 AGIISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWK 224 (339)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCC
Confidence 578999999999999999999999998877644 4688754
No 383
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=73.10 E-value=3.7 Score=46.52 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=32.4
Q ss_pred cCcEEEEcCCchHHHHHHHHHHh-cccCCCCcceeecCCCcccc
Q 003715 212 EAKVFVVGSGALGCEFLKNLALM-GVSCGNQGKLTITDDDVIEK 254 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~-Gv~~~~~g~i~liD~D~Ie~ 254 (800)
...|+|||+|-+|+.+|-.|++. |. .+++|+|.+.+-.
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~-----~~V~vle~~~~~~ 68 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGI-----TNVAVLEKGWLGG 68 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCC-----CeEEEEEcccccC
Confidence 34799999999999999999985 86 5899999886644
No 384
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=73.02 E-value=3.4 Score=46.90 Aligned_cols=80 Identities=18% Similarity=0.105 Sum_probs=49.6
Q ss_pred cCcEEEEcC-CchHHHHHHHHHHhcccCCCCc--ceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHC-CCC
Q 003715 212 EAKVFVVGS-GALGCEFLKNLALMGVSCGNQG--KLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALIN-PHL 287 (800)
Q Consensus 212 ~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g--~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~n-p~v 287 (800)
-.||.|||+ |.+|+.+|-.|+..|++ +++. .|+|+|. |+.+.|++..+.-|...- |..
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~-~~~~ei~L~L~di-----------------D~~~~~a~g~a~DL~d~a~~~~ 105 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVF-GQDQPIALKLLGS-----------------ERSKEALEGVAMELEDSLYPLL 105 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccc-CCCCceEEEEecc-----------------CccchhhhHHHHHHHHhhhhhc
Confidence 468999999 99999999999999994 1111 3555543 445556666665555443 332
Q ss_pred -eEEEeeccCCcchhcccchhhccCCCEEEEcc
Q 003715 288 -NTEALQIRANPETENVFNDTFWENLNVVVNAL 319 (800)
Q Consensus 288 -~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~ 319 (800)
++.... .+ .+-++++|+||.+.
T Consensus 106 ~~v~i~~-----~~-----y~~~kdaDIVVitA 128 (387)
T TIGR01757 106 REVSIGI-----DP-----YEVFEDADWALLIG 128 (387)
T ss_pred CceEEec-----CC-----HHHhCCCCEEEECC
Confidence 121111 11 13357899988763
No 385
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=73.02 E-value=2.8 Score=45.79 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=28.2
Q ss_pred EEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 215 VFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 215 VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
|.|||+|.+|+.++-.|++.|+ ++++++|-|
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l-----~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKEL-----GDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCC-----cEEEEEeCC
Confidence 5799999999999999999998 589999866
No 386
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=73.00 E-value=3.2 Score=43.48 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=29.1
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+.+++|+|.|+ |+||.++++.|+..|. +++++|.
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~------~V~~~~r 42 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA------EVILNGR 42 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC------EEEEEeC
Confidence 56789999985 9999999999999997 6777654
No 387
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=72.83 E-value=10 Score=39.27 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.5
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcc
Q 003715 213 AKVFVVGS-GALGCEFLKNLALMGV 236 (800)
Q Consensus 213 ~~VlIvG~-GgiG~evlknLal~Gv 236 (800)
++|+|.|+ ||||..+++.|+..|.
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~ 27 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGW 27 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 57899985 8999999999999997
No 388
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=72.77 E-value=1.6 Score=51.32 Aligned_cols=90 Identities=21% Similarity=0.327 Sum_probs=61.1
Q ss_pred HHHHHHhhcCccccccccccccccccCCCCCCCccCCCCccCcchhhhhhcCHHHH------------------HHHHcC
Q 003715 152 GQEVVKACSGKFHPLLQFFYFDSVESLPSEPLDPRDLQPLNSRYDAQISVFGSKLQ------------------KKLEEA 213 (800)
Q Consensus 152 aQEVIKait~k~~Pi~q~~~~d~~~~l~~~~l~~~~~~~~~~Rydrqi~l~G~~~q------------------~~L~~~ 213 (800)
-+|.++++...| |- -.+.|..+..- .....-+||...+.+|..+.| .+|.+.
T Consensus 229 ~defv~av~~~~-P~-~~Iq~EDf~~~--------naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~ 298 (559)
T PTZ00317 229 LDEFMEAVSSRW-PN-AVVQFEDFSNN--------HCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQ 298 (559)
T ss_pred HHHHHHHHHHhC-CC-eEEehhhcCCc--------cHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhc
Confidence 589999999999 75 34455544321 111122667666766654433 468899
Q ss_pred cEEEEcCCchHHHHHHHHHH----hcccCCC-CcceeecCCCc
Q 003715 214 KVFVVGSGALGCEFLKNLAL----MGVSCGN-QGKLTITDDDV 251 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal----~Gv~~~~-~g~i~liD~D~ 251 (800)
||+++|+|+-|.-+++.|+. .|++-.. ..+|.++|.+-
T Consensus 299 riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~G 341 (559)
T PTZ00317 299 RIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKG 341 (559)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence 99999999999999998884 6772211 25899999763
No 389
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=72.75 E-value=3.1 Score=46.93 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=30.6
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
...|+|||+|..|+.+|-.|++.|+ +++|+|...
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGL------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCC------EEEEEeCCC
Confidence 3579999999999999999999999 799999764
No 390
>PRK05855 short chain dehydrogenase; Validated
Probab=72.75 E-value=6.1 Score=46.52 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=31.2
Q ss_pred HHHHHHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 205 KLQKKLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 205 ~~q~~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
.....+++.+++|+|+ ||||.++++.|+..|. ++++++
T Consensus 308 ~~~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~------~v~~~~ 346 (582)
T PRK05855 308 RPRGPFSGKLVVVTGAGSGIGRETALAFAREGA------EVVASD 346 (582)
T ss_pred cccccCCCCEEEEECCcCHHHHHHHHHHHHCCC------EEEEEe
Confidence 3345677889999985 9999999999999998 577765
No 391
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=72.69 E-value=3.2 Score=45.46 Aligned_cols=33 Identities=21% Similarity=0.555 Sum_probs=27.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.+|+|||+|.+|..+++.|...|.. .+++++|.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~----~~V~~~dr 39 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLA----GEIVGADR 39 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCC----cEEEEEEC
Confidence 5799999999999999999999861 26777763
No 392
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.59 E-value=8.8 Score=40.52 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=29.7
Q ss_pred HHHcCcEEEEcC---CchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 209 KLEEAKVFVVGS---GALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlIvG~---GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
++.++.++|.|+ +|||.++++.|+..|. +++++|.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~------~v~l~~r 41 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGA------EVVLTGF 41 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCC------EEEEecC
Confidence 366788999996 7999999999999997 7888764
No 393
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=72.57 E-value=12 Score=41.62 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=26.9
Q ss_pred HcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 211 EEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 211 ~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
++++|+|.| +|.||+.+++.|+..|. ++++++.
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~------~V~~~~r 42 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY------TVHATLR 42 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 356899999 58999999999999987 6666543
No 394
>PRK09126 hypothetical protein; Provisional
Probab=72.57 E-value=3 Score=46.91 Aligned_cols=34 Identities=32% Similarity=0.592 Sum_probs=30.5
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
+..|+|||+|..|+.+|-.|++.|+ +++|+|...
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~------~v~v~E~~~ 36 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGL------KVTLIERQP 36 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC------cEEEEeCCC
Confidence 4679999999999999999999999 789988654
No 395
>PLN02852 ferredoxin-NADP+ reductase
Probab=72.55 E-value=10 Score=44.57 Aligned_cols=42 Identities=29% Similarity=0.299 Sum_probs=33.8
Q ss_pred cCcEEEEcCCchHHHHHHHHHH--hcccCCCCcceeecCCCcccccCCccc
Q 003715 212 EAKVFVVGSGALGCEFLKNLAL--MGVSCGNQGKLTITDDDVIEKSNLSRQ 260 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal--~Gv~~~~~g~i~liD~D~Ie~sNLnRQ 260 (800)
..+|+|||+|.-|.+.|..|++ .|. +++|+|... .+-.|.|.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~------~Vtv~E~~p-~pgGlvr~ 69 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGA------RVDIIERLP-TPFGLVRS 69 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCC------eEEEEecCC-CCcceEee
Confidence 4589999999999999999997 565 899998765 34455564
No 396
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=72.51 E-value=5.4 Score=42.38 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=50.2
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCe
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 288 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~ 288 (800)
+++++++|.|+ |+||.++++.|+..|. +++++|.+. .+.+.+.+.+... ..+
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~------~V~~~~r~~-------------------~~~~~~~~~~~~~--~~~ 60 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGA------KVAILDRNQ-------------------EKAEAVVAEIKAA--GGE 60 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEeCCH-------------------HHHHHHHHHHHhc--CCe
Confidence 56778999985 8999999999999998 677775321 1233334444332 224
Q ss_pred EEEeeccCCcchh--cccc--hhhccCCCEEEEcc
Q 003715 289 TEALQIRANPETE--NVFN--DTFWENLNVVVNAL 319 (800)
Q Consensus 289 i~~~~~~v~~~~~--~~~~--~~f~~~~dvVi~a~ 319 (800)
+..+...+..... ..+. .+.+.+.|+||++.
T Consensus 61 ~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~a 95 (278)
T PRK08277 61 ALAVKADVLDKESLEQARQQILEDFGPCDILINGA 95 (278)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 5556555543221 1111 11245789998874
No 397
>CHL00194 ycf39 Ycf39; Provisional
Probab=72.51 E-value=11 Score=41.28 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=25.0
Q ss_pred cEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 214 KVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 214 ~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+|+|.|+ |-+|+.+++.|...|. +++.++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~------~V~~l~ 31 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY------QVRCLV 31 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC------eEEEEE
Confidence 7999995 9999999999999987 666654
No 398
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=72.39 E-value=3 Score=47.28 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=30.2
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
..|+|||+|..|+.+|-.|++.|+ +++|+|...
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~------~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGL------EVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCC------EEEEEcCCC
Confidence 479999999999999999999998 899998765
No 399
>PRK06179 short chain dehydrogenase; Provisional
Probab=72.22 E-value=9.2 Score=40.37 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=27.9
Q ss_pred cCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 212 EAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
+.+|+|.|+ |+||.++++.|+..|. ++++++.+.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~------~V~~~~r~~ 38 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY------RVFGTSRNP 38 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC------EEEEEeCCh
Confidence 457888884 8999999999999997 677777653
No 400
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=72.11 E-value=13 Score=45.33 Aligned_cols=34 Identities=29% Similarity=0.483 Sum_probs=30.7
Q ss_pred HcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 211 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.+.+|+|||+|..|-..|..|++.|. +++|+|.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~------~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV------AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC------eEEEEecC
Confidence 46799999999999999999999998 68998864
No 401
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=72.07 E-value=2.8 Score=47.31 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=34.2
Q ss_pred ccccchhHHHhhhhHHHHHHHhhcCccccccc-cccccccc
Q 003715 137 RAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQ-FFYFDSVE 176 (800)
Q Consensus 137 ~~el~Pv~AiiGGivaQEVIKait~k~~Pi~q-~~~~d~~~ 176 (800)
.+.+.|+.+++|++.|.|+||.++|...|+.+ .+.||+.+
T Consensus 204 ~gvlg~~~~~ig~~~a~eaik~l~g~g~~l~g~ll~~d~~~ 244 (370)
T PRK05600 204 AGVLGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALT 244 (370)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCC
Confidence 46799999999999999999999998777764 66788754
No 402
>PRK07825 short chain dehydrogenase; Provisional
Probab=72.04 E-value=5 Score=42.57 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=27.9
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+.+++++|.|+ ||||.++++.|+..|. ++++++.
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~------~v~~~~r 37 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGA------RVAIGDL 37 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEEC
Confidence 34578999996 8999999999999997 5777653
No 403
>PRK05650 short chain dehydrogenase; Provisional
Probab=72.04 E-value=9.4 Score=40.40 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=24.9
Q ss_pred cEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 214 KVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 214 ~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+|+|.|+ ||||.++++.|+..|. ++++++
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~------~V~~~~ 31 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW------RLALAD 31 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC------EEEEEe
Confidence 6889985 8999999999999997 677765
No 404
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=71.95 E-value=11 Score=41.11 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=25.6
Q ss_pred cCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 212 EAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 212 ~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+++|+|.| +|+||+.+++.|+..|. ++++++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~------~V~~~~ 36 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY------TINATV 36 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC------EEEEEE
Confidence 46899998 59999999999999987 565554
No 405
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.95 E-value=3.2 Score=43.11 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=29.1
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+++++|+|+|+ |++|.++++.|+..|. ++++++.
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~------~V~~~~r 37 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGA------RVVVTDR 37 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC------EEEEEeC
Confidence 56779999995 8999999999999997 5888764
No 406
>PRK08643 acetoin reductase; Validated
Probab=71.94 E-value=7.4 Score=40.69 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=26.5
Q ss_pred cCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 212 EAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 212 ~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
++.++|.| .|+||.++++.|+..|. ++.++|.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~------~v~~~~r 34 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF------KVAIVDY 34 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeC
Confidence 45788887 58999999999999997 6777763
No 407
>PRK06753 hypothetical protein; Provisional
Probab=71.92 E-value=3.5 Score=45.94 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=29.1
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
.+|+|||+|..|+.+|-.|++.|+ +++|++.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~------~v~v~E~~~ 33 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGH------EVKVFEKNE 33 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------cEEEEecCC
Confidence 379999999999999999999998 788887553
No 408
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=71.87 E-value=16 Score=39.93 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=66.4
Q ss_pred CcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccc------cCccCccHHHHHHHHHHHHCC
Q 003715 213 AKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFR------DWNIGQAKSTVAASAAALINP 285 (800)
Q Consensus 213 ~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~------~~dIG~~Ka~va~~~l~~~np 285 (800)
.+|||.| +|=|||..++.|...|. .++++|+ .+|=+|..+-+ ..|+.- .+.+.+.+.+..|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~------~vvV~DN----L~~g~~~~v~~~~~~f~~gDi~D--~~~L~~vf~~~~i 68 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH------EVVVLDN----LSNGHKIALLKLQFKFYEGDLLD--RALLTAVFEENKI 68 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC------eEEEEec----CCCCCHHHhhhccCceEEecccc--HHHHHHHHHhcCC
Confidence 3688885 99999999999999998 8888883 33333333332 224433 2344555555566
Q ss_pred CCeEEEeeccCCcchhccc-chhhccCCCEEEEccCCHHHHHHHhhhcccccc-cEEEecccCcccce
Q 003715 286 HLNTEALQIRANPETENVF-NDTFWENLNVVVNALDNVNARLYIDQRCLYFQK-PLLESGTLGAKCNT 351 (800)
Q Consensus 286 ~v~i~~~~~~v~~~~~~~~-~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~-pli~sg~~G~~G~v 351 (800)
+.-|+.-....-. |+.- ..+++. .|+..-+.+-+.|+.+++ .+|.|.+.-.+|.-
T Consensus 69 daViHFAa~~~Vg--ESv~~Pl~Yy~---------NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p 125 (329)
T COG1087 69 DAVVHFAASISVG--ESVQNPLKYYD---------NNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEP 125 (329)
T ss_pred CEEEECccccccc--hhhhCHHHHHh---------hchHhHHHHHHHHHHhCCCEEEEecchhhcCCC
Confidence 5444332211111 1111 112222 244444556667777776 57778877777753
No 409
>PRK06194 hypothetical protein; Provisional
Probab=71.78 E-value=3.3 Score=44.22 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=28.4
Q ss_pred HHcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+++++|+|.| +||||.++++.|+..|. +++++|.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~------~V~~~~r 38 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM------KLVLADV 38 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC------EEEEEeC
Confidence 4457899998 58999999999999997 6888764
No 410
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=71.78 E-value=2.7 Score=47.54 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=64.0
Q ss_pred HHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccC-c--cCccHHHHHHHHHHHHC
Q 003715 208 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDW-N--IGQAKSTVAASAAALIN 284 (800)
Q Consensus 208 ~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~-d--IG~~Ka~va~~~l~~~n 284 (800)
++|+..||++.|+|+-|+.+++.|..+|+. ..+|.++|.-- .++... | .++.|.+.+.+......
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~---~~~i~~~D~~G---------~l~~~r~~~~~~~~k~~~a~~~~~~~~ 262 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVK---EENIFVVDRKG---------LLYDGREDLTMNQKKYAKAIEDTGERT 262 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCC---cccEEEEecCC---------cccCCCcccccchHHHHHHHhhhcccc
Confidence 468889999999999999999999999992 25999998432 223222 2 46667666543322111
Q ss_pred CCCeEEEeeccCCcchhcccchhhccCCCEEEEccCC-HHHHHHHhhhcccccccEEEecc
Q 003715 285 PHLNTEALQIRANPETENVFNDTFWENLNVVVNALDN-VNARLYIDQRCLYFQKPLLESGT 344 (800)
Q Consensus 285 p~v~i~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn-~~ar~~v~~~c~~~~~pli~sg~ 344 (800)
. ..-..+.|+.|.+... .=....+.+++.. |+|-+-+
T Consensus 263 ---~-----------------~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~---PiIfala 300 (432)
T COG0281 263 ---L-----------------DLALAGADVLIGVSGVGAFTEEMVKEMAKH---PIIFALA 300 (432)
T ss_pred ---c-----------------cccccCCCEEEEcCCCCCcCHHHHHHhccC---CEEeecC
Confidence 0 0123578888877653 1223355555543 7775443
No 411
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=71.59 E-value=11 Score=42.26 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=27.3
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.+|+|.|+|++|..++..+..+|. .+++.+|
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~-----~~Vi~~~ 223 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGA-----SQVVAVD 223 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-----CcEEEEc
Confidence 4689999999999998888888898 6787775
No 412
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=71.51 E-value=5.1 Score=42.37 Aligned_cols=56 Identities=29% Similarity=0.381 Sum_probs=44.3
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHHHHHHHHc
Q 003715 442 KERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETY 521 (800)
Q Consensus 442 ~~~~~~~~~c~~~A~~~f~~~F~~~I~~Ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~ 521 (800)
...|.+.++|++||+.+|. +|+.|++||.++|++||..|
T Consensus 159 ~~~P~~~~hci~~a~~~~~-----------------------------------------d~~~~~~~i~~~a~~ra~~~ 197 (234)
T cd01484 159 ASMPRLPEHCIEWARMLQW-----------------------------------------DDPEHIQFIFQASNERASQY 197 (234)
T ss_pred CCCCCCchHHHHHHHHHHh-----------------------------------------CCHHHHHHHHHHHHHHHHHc
Confidence 4568999999999998763 57889999999999999999
Q ss_pred CCCCCCCCCChhHHHHHhhhc
Q 003715 522 GIPIPDWVKSPVKLADAVNKV 542 (800)
Q Consensus 522 ~i~~~~~~~~~~~~~~~~~~~ 542 (800)
||+..+ ....+.++.++
T Consensus 198 ~i~~~~----~~~~~~i~~~i 214 (234)
T cd01484 198 NIRGVT----YFLTKGVAGRI 214 (234)
T ss_pred CCCCcC----HHHHHHHhcCe
Confidence 999753 34444554443
No 413
>PRK12829 short chain dehydrogenase; Provisional
Probab=71.45 E-value=4.2 Score=42.60 Aligned_cols=36 Identities=25% Similarity=0.483 Sum_probs=30.8
Q ss_pred HHHHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 207 QKKLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 207 q~~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
...+++++++|.|+ |++|..+++.|+..|. ++++++
T Consensus 6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~------~V~~~~ 42 (264)
T PRK12829 6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGA------RVHVCD 42 (264)
T ss_pred hhccCCCEEEEeCCCCcHHHHHHHHHHHCCC------EEEEEe
Confidence 34578899999995 9999999999999997 677776
No 414
>PRK12828 short chain dehydrogenase; Provisional
Probab=71.37 E-value=3.4 Score=42.34 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=29.7
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+++++|+|.|+ |+||..+++.|+..|. +++++|.+
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~------~v~~~~r~ 40 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGA------RVALIGRG 40 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCC------eEEEEeCC
Confidence 56688999985 9999999999999997 68887653
No 415
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=71.36 E-value=11 Score=42.19 Aligned_cols=106 Identities=14% Similarity=0.258 Sum_probs=59.9
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEE
Q 003715 213 AKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 291 (800)
Q Consensus 213 ~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~ 291 (800)
.+|+|+|+ |-+|.|+++.|...+. +..++..+- ..+..|+. +.-.+-++.++.
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~h---P~~~l~~v~---------------s~~~aG~~--------l~~~~~~l~~~~ 58 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDF---PVGTLHLLA---------------SSESAGHS--------VPFAGKNLRVRE 58 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCC---CceEEEEEE---------------CcccCCCe--------eccCCcceEEee
Confidence 58999996 9999999999996655 224444431 12233443 000000111111
Q ss_pred eeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEec-ccCcccceEEEeCCc
Q 003715 292 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG-TLGAKCNTQMVIPHL 358 (800)
Q Consensus 292 ~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg-~~G~~G~v~~iip~~ 358 (800)
. . . .+ |+++|+|+-|+.+-.++.++... ...++.+||.+ ..-+. .+..++|.+
T Consensus 59 ~----~---~----~~-~~~vD~vFla~p~~~s~~~v~~~-~~~G~~VIDlS~~fR~~-~~pl~lPEv 112 (336)
T PRK05671 59 V----D---S----FD-FSQVQLAFFAAGAAVSRSFAEKA-RAAGCSVIDLSGALPSA-QAPNVVPEV 112 (336)
T ss_pred C----C---h----HH-hcCCCEEEEcCCHHHHHHHHHHH-HHCCCeEEECchhhcCC-CCCEEeccc
Confidence 1 0 0 12 47899999999987777766654 55688888633 33332 333445543
No 416
>PRK12861 malic enzyme; Reviewed
Probab=71.28 E-value=1.9 Score=52.84 Aligned_cols=41 Identities=29% Similarity=0.386 Sum_probs=35.0
Q ss_pred HHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 208 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 208 ~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
++|++.||++.|+|+-|..+++.|...|+. ..+|.++|..-
T Consensus 185 k~l~d~~iv~~GAGaAg~~ia~~l~~~G~~---~~~i~~~D~~G 225 (764)
T PRK12861 185 KSIKEVKVVTSGAGAAALACLDLLVDLGLP---VENIWVTDIEG 225 (764)
T ss_pred CChhHcEEEEECHhHHHHHHHHHHHHcCCC---hhhEEEEcCCC
Confidence 468899999999999999999999999992 12899999643
No 417
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=71.27 E-value=4 Score=45.56 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=35.3
Q ss_pred HcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCC
Q 003715 211 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNL 257 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNL 257 (800)
...+|+|||+|-+|+.+|-.|++.|. +++++|.+.+...+-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~------~V~vie~~~~~~g~s 43 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA------DVTVLEAGEAGGGAA 43 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC------EEEEEecCccCCcch
Confidence 35689999999999999999999997 899999888855333
No 418
>PRK07035 short chain dehydrogenase; Provisional
Probab=71.08 E-value=4.9 Score=41.93 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=29.1
Q ss_pred HHcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+.+++|+|.| .|+||.++++.|+..|. ++.++|.
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~------~Vi~~~r 40 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA------HVIVSSR 40 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 5677899998 58999999999999997 7888764
No 419
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=70.96 E-value=3.6 Score=49.81 Aligned_cols=37 Identities=24% Similarity=0.435 Sum_probs=32.4
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCccccc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKS 255 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~s 255 (800)
..|+|||.|.+|+.+|..|++.|. +++|+|.+.+...
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl------~V~LvE~~d~a~G 108 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGL------RVGLVEREDFSSG 108 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCC------EEEEEeccccCCC
Confidence 579999999999999999999998 7999998765433
No 420
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.95 E-value=3.6 Score=47.97 Aligned_cols=37 Identities=24% Similarity=0.452 Sum_probs=32.1
Q ss_pred HHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 208 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 208 ~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
..+.+++|+|+|+|+.|..+++.|...|. .+++.|.+
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~------~V~~~D~~ 47 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGC------DVVVADDN 47 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCC------EEEEECCC
Confidence 45677899999999999999999999997 78888843
No 421
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=70.79 E-value=3.9 Score=46.19 Aligned_cols=33 Identities=15% Similarity=0.398 Sum_probs=29.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHh--cccCCCCcceeecCCCc
Q 003715 213 AKVFVVGSGALGCEFLKNLALM--GVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~--Gv~~~~~g~i~liD~D~ 251 (800)
..|+|||+|.+|+.+|..|++. |. +++|+|...
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~------~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGA------RIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCC------eEEEEeCCC
Confidence 5799999999999999999998 86 899999763
No 422
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=70.71 E-value=3.9 Score=45.81 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=30.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVI 252 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~I 252 (800)
..|+|||+|..|+.+|..|++.|+ +++|+|.+..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~------~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGL------RVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCC------eEEEEecCCC
Confidence 479999999999999999999998 8999987654
No 423
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=70.69 E-value=4 Score=43.59 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=29.2
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
+|+|||+|..|.+.|..|++.|. +++|+|...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~------~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANL------KTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC------CEEEEeccC
Confidence 69999999999999999999998 799999754
No 424
>PRK08265 short chain dehydrogenase; Provisional
Probab=70.60 E-value=5.5 Score=42.07 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=29.7
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+++++++|.|+ ||||.++++.|+..|. +++++|.+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~------~V~~~~r~ 39 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGA------RVAIVDID 39 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56788999985 9999999999999997 78887643
No 425
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=70.51 E-value=3.5 Score=46.49 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=28.5
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.|+|||+|..|+..|..|++.|+ +++|+|..
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGI------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC------cEEEEECC
Confidence 58999999999999999999998 78898875
No 426
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=70.50 E-value=2.7 Score=48.02 Aligned_cols=63 Identities=30% Similarity=0.542 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHHHHHHHHcCCCCC
Q 003715 450 DCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIP 526 (800)
Q Consensus 450 ~c~~~A~~~f~~~F~~~I~~Ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~ 526 (800)
+|--|...-....|...|+.|-..+|.. ...|. +.||.++..-++||.+|||+||.+|||+-.
T Consensus 305 ~~~v~~v~~~~~vf~~~i~~l~~~~~~~------~~h~~--------l~fdKdd~~~~~FVaaaaNiRa~if~ipmk 367 (603)
T KOG2013|consen 305 DQNVWTVDEGAVVFRLSIQALDLRCPKE------SDHWY--------LIFDKDDASTMEFVAAAANIRAHIFGIPMK 367 (603)
T ss_pred CcceeeeccccHHHHHHHHHhcccCCcc------CCCce--------EEEcCCcHHHHHHHHHHhhhhhhhhccchh
Confidence 4445666666778999998885443432 23333 689999999999999999999999999754
No 427
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=70.50 E-value=4.1 Score=42.79 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=31.6
Q ss_pred HHHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 208 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 208 ~~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
..|+.++|+|.|.|.+|..+++.|...|. .-+.+.|.+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~-----~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGA-----KVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCC-----EEEEEECCC
Confidence 45788999999999999999999999998 333377753
No 428
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=70.44 E-value=5.7 Score=43.19 Aligned_cols=32 Identities=28% Similarity=0.550 Sum_probs=29.5
Q ss_pred HcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 211 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
...+|..||.|-.|+.+++||..+|. ++++.|
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~------kVtV~d 65 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGY------KVTVYD 65 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCC------EEEEEe
Confidence 46789999999999999999999998 888886
No 429
>PRK07236 hypothetical protein; Provisional
Probab=70.40 E-value=3.6 Score=46.36 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=30.1
Q ss_pred HcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 211 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
...+|+|||+|-.|..+|-.|++.|+ +++|+|..
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~------~v~v~E~~ 38 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGW------DVDVFERS 38 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCC------CEEEEecC
Confidence 35689999999999999999999999 78888754
No 430
>PLN02256 arogenate dehydrogenase
Probab=70.29 E-value=3.5 Score=45.27 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=29.0
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+-+..+|.|||+|.+|..+++.|...|. .++++|.
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~------~V~~~d~ 67 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGH------TVLATSR 67 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCC------EEEEEEC
Confidence 3356789999999999999999998886 6777763
No 431
>PRK08628 short chain dehydrogenase; Provisional
Probab=70.24 E-value=8.8 Score=40.16 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=28.3
Q ss_pred HHcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
|.+++++|.| .|+||.++++.|+..|. ++++++.
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~------~v~~~~r 39 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGA------IPVIFGR 39 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCC------cEEEEcC
Confidence 5678899998 58999999999999997 5666653
No 432
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=70.19 E-value=4.1 Score=44.12 Aligned_cols=30 Identities=37% Similarity=0.459 Sum_probs=26.7
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+|.|||+|.+|+.++.+|+..|. +++++|.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~------~V~~~dr 30 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY------QLHVTTI 30 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC------eEEEEcC
Confidence 58999999999999999999997 7777763
No 433
>PRK06128 oxidoreductase; Provisional
Probab=70.03 E-value=7.9 Score=41.90 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=28.7
Q ss_pred HHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 209 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+|++++|+|.|+ ||||.++++.|+..|. ++++++
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~------~V~i~~ 86 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGA------DIALNY 86 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCC------EEEEEe
Confidence 577889999985 9999999999999997 566543
No 434
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=70.00 E-value=3.9 Score=46.39 Aligned_cols=33 Identities=15% Similarity=0.421 Sum_probs=29.9
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
...|+|||+|..|..+|-.|++.|+ +++|+|..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDL------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCC------EEEEEcCC
Confidence 3579999999999999999999999 78999874
No 435
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=69.99 E-value=11 Score=43.50 Aligned_cols=37 Identities=27% Similarity=0.135 Sum_probs=27.4
Q ss_pred cCcEEEEcC-CchHHHHHHHHHHhcccC---CCCcceeecC
Q 003715 212 EAKVFVVGS-GALGCEFLKNLALMGVSC---GNQGKLTITD 248 (800)
Q Consensus 212 ~~~VlIvG~-GgiG~evlknLal~Gv~~---~~~g~i~liD 248 (800)
-.||.|||+ |.+|+.+|-.|+..+|.. +-..+|.++|
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD 140 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSE 140 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEc
Confidence 358999999 999999999999995521 1113566664
No 436
>PRK08013 oxidoreductase; Provisional
Probab=69.97 E-value=3.6 Score=46.69 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=30.6
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
...|+|||+|..|..+|-.|++.|+ +++|+|...
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~------~v~viE~~~ 36 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGL------RVAVLEQRV 36 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCC------EEEEEeCCC
Confidence 3579999999999999999999999 899998754
No 437
>PRK06184 hypothetical protein; Provisional
Probab=69.88 E-value=3.5 Score=48.34 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=29.9
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
...|+|||+|..|..+|-.|++.|+ +++|+|..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi------~v~viE~~ 35 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGV------SFRLIEKA 35 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC------cEEEEeCC
Confidence 4679999999999999999999999 78998864
No 438
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=69.80 E-value=4.4 Score=43.95 Aligned_cols=31 Identities=35% Similarity=0.453 Sum_probs=27.1
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.+|.|||+|.+|..++++|+..|. .+++.|.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~------~v~~~d~ 33 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY------SLVVYDR 33 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC------eEEEEcC
Confidence 479999999999999999999987 6777764
No 439
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.78 E-value=8 Score=40.19 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=23.6
Q ss_pred HHcCcEEEEc-CCchHHHHHHHHHHhcc
Q 003715 210 LEEAKVFVVG-SGALGCEFLKNLALMGV 236 (800)
Q Consensus 210 L~~~~VlIvG-~GgiG~evlknLal~Gv 236 (800)
|++++++|.| .|+||.++++.|+..|.
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~ 30 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGA 30 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 4567899998 68999999999999997
No 440
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=69.70 E-value=3.8 Score=47.91 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=29.0
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+++++++|+|+||+|..+++.|+..|. +++++|
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~------~V~i~~ 362 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA------ELLIFN 362 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC------EEEEEe
Confidence 567899999999999999999999997 677765
No 441
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=69.62 E-value=10 Score=42.13 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=30.4
Q ss_pred HHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 209 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 209 ~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+++.++|+|.|+ |=||+.+++.|...|. +++.+|..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~------~V~~~d~~ 48 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ------TVIGLDNF 48 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 456689999995 9999999999999986 77887753
No 442
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=69.61 E-value=4.1 Score=47.92 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=29.3
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
-.+|.|||+|..|+.++.+|+..|. .++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~------~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH------QVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCC
Confidence 3579999999999999999999998 88888743
No 443
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=69.60 E-value=12 Score=41.91 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=20.9
Q ss_pred cEEEEcCCchHHHHHHHHHHhc
Q 003715 214 KVFVVGSGALGCEFLKNLALMG 235 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~G 235 (800)
||.|+|+|+-|+.++..|+..|
T Consensus 1 kI~VIGaG~wGtALA~~la~ng 22 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENA 22 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcC
Confidence 6899999999999999999988
No 444
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=69.59 E-value=4 Score=42.84 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=29.0
Q ss_pred HHHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 209 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
++.+++++|.|+ ||||.++++.|+..|. +++++|
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~------~v~~~~ 39 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGA------RVVLVD 39 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEe
Confidence 466788999985 8999999999999997 677776
No 445
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=69.45 E-value=4.3 Score=44.72 Aligned_cols=76 Identities=26% Similarity=0.358 Sum_probs=51.2
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCC----ccccccccCccCccHHHHHHHHHHHHC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNL----SRQFLFRDWNIGQAKSTVAASAAALIN 284 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNL----nRQflf~~~dIG~~Ka~va~~~l~~~n 284 (800)
.|.++.+.|+|.|-||+|+++.+-.+|. +++..|+ +.+... +-|+. .+.++.
T Consensus 143 el~GKTLgvlG~GrIGseVA~r~k~~gm------~vI~~dp--i~~~~~~~a~gvq~v----------------sl~Eil 198 (406)
T KOG0068|consen 143 ELRGKTLGVLGLGRIGSEVAVRAKAMGM------HVIGYDP--ITPMALAEAFGVQLV----------------SLEEIL 198 (406)
T ss_pred EEeccEEEEeecccchHHHHHHHHhcCc------eEEeecC--CCchHHHHhccceee----------------eHHHHH
Confidence 4788999999999999999999888887 6666553 322222 11221 133455
Q ss_pred CCCeEEEeeccCCcchhcccchhh
Q 003715 285 PHLNTEALQIRANPETENVFNDTF 308 (800)
Q Consensus 285 p~v~i~~~~~~v~~~~~~~~~~~f 308 (800)
|......++..++|+|+++++++-
T Consensus 199 ~~ADFitlH~PLtP~T~~lin~~t 222 (406)
T KOG0068|consen 199 PKADFITLHVPLTPSTEKLLNDET 222 (406)
T ss_pred hhcCEEEEccCCCcchhhccCHHH
Confidence 566677777777777777766543
No 446
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=69.44 E-value=4 Score=45.24 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=29.8
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcccC-CCCcceeecCCC
Q 003715 213 AKVFVVGS-GALGCEFLKNLALMGVSC-GNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~-GgiG~evlknLal~Gv~~-~~~g~i~liD~D 250 (800)
.||+|+|+ |.+|+.++..|+..|++. ...-+|.++|..
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~ 42 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIP 42 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcC
Confidence 47999998 999999999999999842 111278998753
No 447
>PRK05868 hypothetical protein; Validated
Probab=69.43 E-value=4.5 Score=45.48 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=29.2
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.+|+|||+|..|+.+|..|++.|+ +++|+|..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~------~v~viE~~ 33 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGY------SVTMVERH 33 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC------CEEEEcCC
Confidence 479999999999999999999999 79999865
No 448
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=69.34 E-value=17 Score=38.90 Aligned_cols=93 Identities=15% Similarity=0.287 Sum_probs=55.4
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEe
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 292 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~ 292 (800)
.+|+|+|+-+-|..+++.|...|. .++.. .+. +-|... +.. .+. ...+
T Consensus 1 m~ILvlGGT~egr~la~~L~~~g~------~v~~s---------------~~t-~~~~~~-------~~~-~g~--~~v~ 48 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQGI------EILVT---------------VTT-SEGKHL-------YPI-HQA--LTVH 48 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhCCC------eEEEE---------------Ecc-CCcccc-------ccc-cCC--ceEE
Confidence 479999997789999999998887 33321 000 111110 000 001 1222
Q ss_pred eccCCcchhcccchhhc--cCCCEEEEccCCHHHHH--HHhhhcccccccEEE
Q 003715 293 QIRANPETENVFNDTFW--ENLNVVVNALDNVNARL--YIDQRCLYFQKPLLE 341 (800)
Q Consensus 293 ~~~v~~~~~~~~~~~f~--~~~dvVi~a~Dn~~ar~--~v~~~c~~~~~pli~ 341 (800)
.+.++.+. + .+|+ .+.|+||||+...+++. .+.+.|...++|++-
T Consensus 49 ~g~l~~~~--l--~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR 97 (256)
T TIGR00715 49 TGALDPQE--L--REFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVR 97 (256)
T ss_pred ECCCCHHH--H--HHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEE
Confidence 33333221 1 1233 35899999999887664 677899999999983
No 449
>PRK06847 hypothetical protein; Provisional
Probab=69.29 E-value=4.3 Score=45.27 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=29.4
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
..+|+|||+|..|+.+|..|++.|+ +++|+|.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~------~v~v~E~~ 36 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGI------AVDLVEID 36 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCC------CEEEEecC
Confidence 3579999999999999999999998 78888764
No 450
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=69.24 E-value=16 Score=40.43 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=27.8
Q ss_pred HcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 211 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.+.+|+|+|+|++|...+..+..+|. ++++++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~------~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF------EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC------eEEEEec
Confidence 56799999999999999988888887 5777653
No 451
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=69.14 E-value=16 Score=40.31 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=36.5
Q ss_pred hccCCCEEEEccCCHHHHHHHhhhcccccccEEEec-ccCcccceEEEeCCccc
Q 003715 308 FWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG-TLGAKCNTQMVIPHLTE 360 (800)
Q Consensus 308 f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg-~~G~~G~v~~iip~~t~ 360 (800)
.+.++|+|+.|+.+-.++.++.+.. ..++.+||-+ ..-+.-.+...+|.+.+
T Consensus 47 ~~~~~DvvFlalp~~~s~~~~~~~~-~~g~~VIDlSadfRl~~~~~yglPEvn~ 99 (313)
T PRK11863 47 LLNAADVAILCLPDDAAREAVALID-NPATRVIDASTAHRTAPGWVYGFPELAP 99 (313)
T ss_pred hhcCCCEEEECCCHHHHHHHHHHHH-hCCCEEEECChhhhcCCCCeEEcCccCH
Confidence 3468999999999998888887653 4678888633 34444456666776643
No 452
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=69.14 E-value=4.4 Score=47.77 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=29.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.+|.|||+|..|+.++.+|++.|+ .+++.|.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~------~V~l~D~~ 39 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH------TVLLYDAR 39 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------eEEEEeCC
Confidence 579999999999999999999998 88898744
No 453
>PRK08244 hypothetical protein; Provisional
Probab=69.11 E-value=4.2 Score=47.55 Aligned_cols=32 Identities=31% Similarity=0.544 Sum_probs=29.4
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
..|+|||+|..|..+|..|++.|+ +++|+|..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~------~v~viEr~ 34 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGV------KTCVIERL 34 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC------cEEEEecC
Confidence 579999999999999999999999 88998864
No 454
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=68.99 E-value=5.2 Score=45.43 Aligned_cols=133 Identities=15% Similarity=0.167 Sum_probs=70.1
Q ss_pred HcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHH--HHHHHHCCCCe
Q 003715 211 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAA--SAAALINPHLN 288 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~--~~l~~~np~v~ 288 (800)
+..||.|.|.|.||-.+++.|...+. +..+++.|. |.-+...+..-+.|. +.-|+.+.++-. .....+| +-+
T Consensus 59 ~~~kVaInGfGrIGR~vlr~l~~~~~---~~~evvaIN-d~~~~~~~ayLl~yD-S~hG~f~~~v~~~~g~~l~v~-gk~ 132 (395)
T PLN03096 59 AKIKVAINGFGRIGRNFLRCWHGRKD---SPLDVVAIN-DTGGVKQASHLLKYD-STLGTFDADVKPVGDDAISVD-GKV 132 (395)
T ss_pred cccEEEEECcCHHHHHHHHHHHhCCC---CCeEEEEEc-CCCCHHHHHHHHhhc-ccCCCcCCcEEEecCCEEEEC-CEE
Confidence 34689999999999999999886532 225666664 444544444322232 233665433210 0000111 112
Q ss_pred EEEeeccCCcchhcccchhhc--cCCCEEEEccCCHHHHHHHhhhcccccc-cEEEecccCcccceEEEeCCcc
Q 003715 289 TEALQIRANPETENVFNDTFW--ENLNVVVNALDNVNARLYIDQRCLYFQK-PLLESGTLGAKCNTQMVIPHLT 359 (800)
Q Consensus 289 i~~~~~~v~~~~~~~~~~~f~--~~~dvVi~a~Dn~~ar~~v~~~c~~~~~-pli~sg~~G~~G~v~~iip~~t 359 (800)
|....++ .+ + ..-| .+.|+|+.|+.....|........ .|. -++.++. .++.+..++|++.
T Consensus 133 I~v~~~~-dp--~----~~~w~~~gvDiVie~TG~f~s~~~a~~hl~-aGAkkV~iSap--~~~~~ptvV~GVN 196 (395)
T PLN03096 133 IKVVSDR-NP--L----NLPWGELGIDLVIEGTGVFVDREGAGKHIQ-AGAKKVLITAP--GKGDIPTYVVGVN 196 (395)
T ss_pred EEEEEcC-Cc--c----cccccccCCCEEEECcchhhhHHHHHHHHH-CCCEEEEeCCC--CCCCCCeEeCccC
Confidence 2222211 01 1 1124 489999999998877776553332 333 3333443 3445666777654
No 455
>PRK06046 alanine dehydrogenase; Validated
Probab=68.96 E-value=14 Score=40.90 Aligned_cols=86 Identities=10% Similarity=0.186 Sum_probs=55.4
Q ss_pred HcCcEEEEcCCchHHHHHHHHHH-hcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeE
Q 003715 211 EEAKVFVVGSGALGCEFLKNLAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 289 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal-~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i 289 (800)
...+|.|||+|+.|...+..|.. .++ ..+.+.|. ...+++.+++.+.+..+ +.+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i-----~~v~v~~r-------------------~~~~~~~~~~~~~~~~~-~~v 182 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDL-----EEVRVYDR-------------------TKSSAEKFVERMSSVVG-CDV 182 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCc-----eEEEEECC-------------------CHHHHHHHHHHHHhhcC-ceE
Confidence 45789999999999999999974 466 77888753 33455666666654332 334
Q ss_pred EEeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEEecccC
Q 003715 290 EALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLG 346 (800)
Q Consensus 290 ~~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~sg~~G 346 (800)
..+.. . ++..+ +|+|+.|+-+ ..|++......
T Consensus 183 ~~~~~-----~-----~~~l~-aDiVv~aTps--------------~~P~~~~~~l~ 214 (326)
T PRK06046 183 TVAED-----I-----EEACD-CDILVTTTPS--------------RKPVVKAEWIK 214 (326)
T ss_pred EEeCC-----H-----HHHhh-CCEEEEecCC--------------CCcEecHHHcC
Confidence 33321 1 12334 8999999854 34787665443
No 456
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=68.93 E-value=11 Score=41.75 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=27.6
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+.+|+|.|+|++|..++.....+|+ .+++.+|.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~-----~~Vi~~~~ 209 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGA-----SKIIAVDI 209 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-----CeEEEEcC
Confidence 5789999999999999888888898 56777753
No 457
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=68.93 E-value=15 Score=42.32 Aligned_cols=152 Identities=18% Similarity=0.102 Sum_probs=80.6
Q ss_pred HcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEE
Q 003715 211 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 290 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~ 290 (800)
++.||.+||+|+.+..-.-.-.+...-.-+..+|.++|-| .+.+. -=...+.+.+++.++.++|+
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did---~~r~~------------~i~~~~~~~v~~~g~~~kv~ 66 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDID---EERLK------------IIAILAKKLVEEAGAPVKVE 66 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCC---HHHHH------------HHHHHHHHHHHhhCCCeEEE
Confidence 3568999999998853222111111111223688888733 22111 01234556667778888888
Q ss_pred EeeccCCcchhcccchhhccCCCEEEEcc--CCHHHHHHHhhhcccccccEEEecccCcccce--EEEeCCcccccCCCC
Q 003715 291 ALQIRANPETENVFNDTFWENLNVVVNAL--DNVNARLYIDQRCLYFQKPLLESGTLGAKCNT--QMVIPHLTENYGASR 366 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~--Dn~~ar~~v~~~c~~~~~pli~sg~~G~~G~v--~~iip~~t~~y~~~~ 366 (800)
..... .+-++++|+|+++. ...++|..-.+...+||+ +-.-|.|..|.. .--+|.+-+--.
T Consensus 67 ~ttd~----------~eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~--~gqET~G~GGi~~glRtIpvildi~~--- 131 (442)
T COG1486 67 ATTDR----------REALEGADFVITQIRVGGLEAREKDERIPLKHGL--YGQETNGPGGIFYGLRTIPVILDIAK--- 131 (442)
T ss_pred EecCH----------HHHhcCCCEEEEEEeeCCcccchhhhccchhhCc--cccccccccHHHhhcccchHHHHHHH---
Confidence 76532 24468999999885 344456555566666664 225566666642 112232211100
Q ss_pred CCCCCCCCCccccCCCCCcchhHHHHHh
Q 003715 367 DPPEKQAPMCTVHSFPHNIDHCLTWARS 394 (800)
Q Consensus 367 ~p~~~~~p~ctl~~fP~~~~h~i~wa~~ 394 (800)
.=++-.|-+++-||-. |.--+.||-.
T Consensus 132 -~m~~~~P~Aw~lNytN-P~~~vTeAv~ 157 (442)
T COG1486 132 -DMEKVCPNAWMLNYTN-PAAIVTEAVR 157 (442)
T ss_pred -HHHHhCCCceEEeccC-hHHHHHHHHH
Confidence 0112346677777754 3444556644
No 458
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=68.91 E-value=4.2 Score=46.05 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=29.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
.+|+|||+|..|+.+|-.|++.|+ +++|+|...
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~------~v~v~E~~~ 51 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGL------RIALIEAQP 51 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCC------EEEEEecCC
Confidence 469999999999999999999998 789988654
No 459
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=68.69 E-value=4.6 Score=42.85 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=29.7
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcc
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVI 252 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~I 252 (800)
.|+|||+|..|+.+|..|++.|+ +++|+|.+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~------~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGL------RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC------eEEEEeccCC
Confidence 58999999999999999999998 7899987653
No 460
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=68.57 E-value=13 Score=40.92 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=39.0
Q ss_pred hhccCCCEEEEccCCHHHHHHHhhhcccccccEEE-ecccCcccceEEEeCCcccc
Q 003715 307 TFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLE-SGTLGAKCNTQMVIPHLTEN 361 (800)
Q Consensus 307 ~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~-sg~~G~~G~v~~iip~~t~~ 361 (800)
+.+++.|+|+.|+.+-.++.++... ...++.+|| |+..-..-.+...+|.+.+.
T Consensus 45 ~~~~~~D~vFlalp~~~s~~~~~~~-~~~g~~VIDlSadfRl~~~~~yglPEln~~ 99 (310)
T TIGR01851 45 KLLNAADVAILCLPDDAAREAVSLV-DNPNTCIIDASTAYRTADDWAYGFPELAPG 99 (310)
T ss_pred HhhcCCCEEEECCCHHHHHHHHHHH-HhCCCEEEECChHHhCCCCCeEEccccCHH
Confidence 3456899999999999888888754 456888886 44455555677778876543
No 461
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=68.42 E-value=4.2 Score=48.16 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=31.6
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
.|.+++|.|||.|.+|.++++.|...|+ ++..+|.
T Consensus 137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~ 171 (526)
T PRK13581 137 ELYGKTLGIIGLGRIGSEVAKRAKAFGM------KVIAYDP 171 (526)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECC
Confidence 5889999999999999999999998888 7888774
No 462
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=68.41 E-value=4 Score=45.60 Aligned_cols=32 Identities=25% Similarity=0.595 Sum_probs=28.8
Q ss_pred cEEEEcCCchHHHHHHHHHHhc-ccCCCCcceeecCCCc
Q 003715 214 KVFVVGSGALGCEFLKNLALMG-VSCGNQGKLTITDDDV 251 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~G-v~~~~~g~i~liD~D~ 251 (800)
.|+|||+|..|+.+|..|++.| + +++|+|...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~------~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKI------KIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCc------eEEEEeCCC
Confidence 3899999999999999999999 9 788888754
No 463
>PRK06500 short chain dehydrogenase; Provisional
Probab=68.26 E-value=4.5 Score=41.97 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=28.7
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+.+++|+|.|+ |+||.++++.|+..|. ++++++.
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~------~v~~~~r 38 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGA------RVAITGR 38 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEecC
Confidence 45678999995 9999999999999997 6777654
No 464
>PRK07060 short chain dehydrogenase; Provisional
Probab=68.23 E-value=4.7 Score=41.67 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=29.0
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+.+++++|.|+ |++|..+++.|+..|. ++++++.
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~------~V~~~~r 41 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA------RVVAAAR 41 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC------EEEEEeC
Confidence 55678999997 8999999999999997 6777763
No 465
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=68.22 E-value=5.4 Score=46.22 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=34.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHh--cccCCCCcceeecCCCcccccCCcc
Q 003715 213 AKVFVVGSGALGCEFLKNLALM--GVSCGNQGKLTITDDDVIEKSNLSR 259 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~--Gv~~~~~g~i~liD~D~Ie~sNLnR 259 (800)
..|+|||+|-+|+.+|..|++. |. +++|+|.+.+....-.|
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~------~V~vlE~~~~g~GaSgr 67 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPAL------DVLVLEADLCGAGASGR 67 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCC------eEEEEeCCccccccccc
Confidence 4799999999999999999998 66 89999998875433333
No 466
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=68.21 E-value=4.3 Score=45.61 Aligned_cols=33 Identities=21% Similarity=0.473 Sum_probs=29.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
..|+|||+|..|+.+|-.|++.|+ +++|+|...
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~------~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGF------SVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCC------EEEEEcCCC
Confidence 469999999999999999999998 899998753
No 467
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=68.20 E-value=4.8 Score=46.03 Aligned_cols=41 Identities=29% Similarity=0.349 Sum_probs=33.3
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccc
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQ 260 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQ 260 (800)
+|.|||+|-+|..++..|+..|. +++++|.+.-....|+++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~------~V~~~d~~~~~v~~l~~g 42 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH------EVTGVDIDQEKVDKLNKG 42 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC------eEEEEECCHHHHHHhhcC
Confidence 79999999999999999999997 788988765444445443
No 468
>PRK08264 short chain dehydrogenase; Validated
Probab=68.16 E-value=4.9 Score=41.50 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=29.9
Q ss_pred HHcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 210 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+.+++|+|.| .|++|.++++.|+..|. .++++++.+
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~-----~~V~~~~r~ 40 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGA-----AKVYAAARD 40 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCc-----ccEEEEecC
Confidence 4567899998 59999999999999997 578777643
No 469
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=68.14 E-value=4 Score=45.24 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.4
Q ss_pred cEEEEcCCchHHHHHHHHHHhc
Q 003715 214 KVFVVGSGALGCEFLKNLALMG 235 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~G 235 (800)
||.|+|+|.||-.+++.|...+
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~ 22 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESG 22 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcC
Confidence 6899999999999999988654
No 470
>PRK13018 cell division protein FtsZ; Provisional
Probab=68.12 E-value=11 Score=42.55 Aligned_cols=51 Identities=20% Similarity=0.406 Sum_probs=37.3
Q ss_pred HHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc--ccccCCcccccc
Q 003715 210 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV--IEKSNLSRQFLF 263 (800)
Q Consensus 210 L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~--Ie~sNLnRQflf 263 (800)
..+.+|.|||+||-||-++.+|...|+ ..-.+..++-|. ++.+...+-.++
T Consensus 26 ~~~~~I~ViGvGGaG~N~v~~m~~~~~---~~v~~iaiNTD~q~L~~~~a~~ki~i 78 (378)
T PRK13018 26 FGNPKIVVVGCGGAGNNTINRLYEIGI---EGAETIAINTDAQHLAMIKADKKILI 78 (378)
T ss_pred cCCCeEEEEEeCCcHHHHHHHHHHcCC---CCceEEEEECCHHHHhcCCCCcEEec
Confidence 446789999999999999999999987 113678888877 444444343444
No 471
>PRK08163 salicylate hydroxylase; Provisional
Probab=68.10 E-value=4.4 Score=45.55 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=30.4
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
..+|+|||+|..|..+|-.|++.|+ +++|+|.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~------~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGI------KVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCC------cEEEEeeCc
Confidence 4689999999999999999999999 789988653
No 472
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=68.00 E-value=13 Score=39.26 Aligned_cols=118 Identities=16% Similarity=0.180 Sum_probs=69.1
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEEee
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 293 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~~~ 293 (800)
++.+||+|-.|..++++|...|- .++..|-+.-...-+.- -|-.-+..+.+.+.++-+ -++..+-
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~gh------dvV~yD~n~~av~~~~~--------~ga~~a~sl~el~~~L~~-pr~vWlM 66 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGH------DVVGYDVNQTAVEELKD--------EGATGAASLDELVAKLSA-PRIVWLM 66 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCC------eEEEEcCCHHHHHHHHh--------cCCccccCHHHHHHhcCC-CcEEEEE
Confidence 68899999999999999999997 77887754433322222 122222334455555543 2444432
Q ss_pred ccCCcchhcccc--hhhccCCCEEEEccCC-HHHHHHHhhhcccccccEEEecccC
Q 003715 294 IRANPETENVFN--DTFWENLNVVVNALDN-VNARLYIDQRCLYFQKPLLESGTLG 346 (800)
Q Consensus 294 ~~v~~~~~~~~~--~~f~~~~dvVi~a~Dn-~~ar~~v~~~c~~~~~pli~sg~~G 346 (800)
-.-...+..+++ ..+++.=|+||+.-.+ .+--..-.+.....++-++++||.|
T Consensus 67 vPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG 122 (300)
T COG1023 67 VPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG 122 (300)
T ss_pred ccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCC
Confidence 222211222221 2467788999998532 2222223334556789999999986
No 473
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=67.99 E-value=8 Score=43.36 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=37.4
Q ss_pred HHHcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc--ccccCCccccccc
Q 003715 209 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV--IEKSNLSRQFLFR 264 (800)
Q Consensus 209 ~L~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~--Ie~sNLnRQflf~ 264 (800)
--.+.+|.|||+||-||-++..|.+.|+. .-.+..+|-|. ++.+...+-+++.
T Consensus 14 ~~~~~~i~viGvGg~G~n~v~~l~~~~~~---~~~~iainTD~~~L~~~~a~~ki~iG 68 (349)
T TIGR00065 14 PSNKAKIKVIGVGGGGNNTVNRMLEEGVE---GVEFIAINTDAQHLKTTKADKKILIG 68 (349)
T ss_pred cccCCeEEEEEeCCcHHHHHHHHHHcCCC---ceEEEEEECCHHHHhcCCCCeEEEcC
Confidence 33456899999999999999999999872 24567788776 3444444444443
No 474
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=67.91 E-value=4.7 Score=45.56 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=30.2
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
...|+|||+|..|..+|-.|++.|+ +++|+|..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~------~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGL------DVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC------cEEEEccC
Confidence 3579999999999999999999998 89998876
No 475
>PRK07588 hypothetical protein; Provisional
Probab=67.85 E-value=4.9 Score=45.26 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=29.1
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.+|+|||+|..|+.+|..|++.|+ +++|++.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~------~v~v~E~~ 32 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGH------EPTLIERA 32 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC------ceEEEeCC
Confidence 379999999999999999999998 78998865
No 476
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=67.69 E-value=12 Score=47.44 Aligned_cols=34 Identities=29% Similarity=0.282 Sum_probs=30.9
Q ss_pred HcCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 211 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 211 ~~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.+++|+|||+|.-|...|..|++.|. +++|+|..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~------~VtVfE~~ 338 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF------PVTVFEAF 338 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC------eEEEEeeC
Confidence 37899999999999999999999998 89998854
No 477
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=67.68 E-value=4.8 Score=45.18 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=29.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
..|+|||+|..|..+|-.|++.|+ +++|+|...
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~------~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGI------KTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCC------eEEEecCCC
Confidence 369999999999999999999999 899999754
No 478
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=67.62 E-value=4.5 Score=42.45 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=29.0
Q ss_pred HHHcCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 209 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 209 ~L~~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
++.+++++|.| .|+||..+++.|+..|. ++++++
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~------~V~~~~ 43 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGA------RVVLSA 43 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCC------EEEEEe
Confidence 46678999998 59999999999999997 677765
No 479
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.39 E-value=5.1 Score=41.36 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=24.1
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcc
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGV 236 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv 236 (800)
|.+++++|+|+ |+||.++++.|+..|.
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~ 30 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGA 30 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 56678999985 9999999999999997
No 480
>PRK06914 short chain dehydrogenase; Provisional
Probab=67.35 E-value=13 Score=39.39 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=26.7
Q ss_pred cCcEEEEc-CCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 212 EAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlIvG-~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
++.++|.| .|++|..+++.|+..|. ++++++.+
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~------~V~~~~r~ 36 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY------LVIATMRN 36 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC------EEEEEeCC
Confidence 45688888 58999999999999997 67776543
No 481
>PRK08507 prephenate dehydrogenase; Validated
Probab=67.32 E-value=5.6 Score=42.78 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=25.9
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+|.|||+|.+|..++..|...|.. ..++.+|
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~----~~v~~~d 32 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLI----SKVYGYD 32 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCC----CEEEEEc
Confidence 699999999999999999999861 2566665
No 482
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=67.06 E-value=5.2 Score=46.45 Aligned_cols=32 Identities=31% Similarity=0.613 Sum_probs=29.0
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
-++++|||.|.||+|++-.++++|+ ++||+..
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~------~VTiie~ 204 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGS------KVTVVER 204 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC------cEEEEec
Confidence 3579999999999999999999998 8999864
No 483
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=66.97 E-value=5 Score=44.49 Aligned_cols=35 Identities=26% Similarity=0.215 Sum_probs=29.0
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
+.+++|+|.|+ |.||+.+++.|+..|. +++++|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~------~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA------EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC------EEEEEeCC
Confidence 35688999995 8899999999999996 67777654
No 484
>PLN02985 squalene monooxygenase
Probab=66.96 E-value=5 Score=47.42 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=29.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
..|+|||+|..|+.+|..|++.|. +++|+|.+.
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~------~V~vlEr~~ 76 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGR------RVHVIERDL 76 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCC------eEEEEECcC
Confidence 369999999999999999999998 899998764
No 485
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=66.95 E-value=5.3 Score=43.93 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=29.8
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 213 AKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.||.|+|+ |.+|+.++..|+..|+. ++++++|.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~----~~v~lvd~~ 35 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVV----KEINLISRP 35 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC----CEEEEEECc
Confidence 47999998 99999999999999983 579999863
No 486
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=66.78 E-value=5.2 Score=42.17 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=28.1
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
+.+++++|.|+ ||||.++++.|+..|. +++++|
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~------~V~~~~ 36 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGA------RVAVLD 36 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC------EEEEEe
Confidence 45788999985 8999999999999997 677765
No 487
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=66.77 E-value=4.6 Score=45.48 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=29.5
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
.+|+|||+|..|..+|-.|++.|+ +++|+|..
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~------~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGR------SVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCC------cEEEEcCC
Confidence 479999999999999999999998 89999954
No 488
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=66.76 E-value=5.2 Score=45.99 Aligned_cols=33 Identities=27% Similarity=0.515 Sum_probs=29.3
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
..+|+|||+|.+|+|+|..|+..|. ++++++..
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~------~Vtli~~~ 189 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGS------KVTVLDAA 189 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC------eEEEEecC
Confidence 5689999999999999999999987 78888753
No 489
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=66.74 E-value=14 Score=40.75 Aligned_cols=107 Identities=14% Similarity=0.194 Sum_probs=65.7
Q ss_pred cCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEE
Q 003715 212 EAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 290 (800)
Q Consensus 212 ~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~ 290 (800)
..+|.| |+ |.+|.++++.|...++ +.+++.++....- ..|+ .+.--+..+.|+
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~f---pv~~l~l~~s~~~--------------s~gk--------~i~f~g~~~~V~ 56 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDL---EIEQISIVEIEPF--------------GEEQ--------GIRFNNKAVEQI 56 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCC---chhheeecccccc--------------cCCC--------EEEECCEEEEEE
Confidence 347999 98 9999999999999988 5577777653211 1221 000000111222
Q ss_pred EeeccCCcchhcccchhhccCCCEEEEccCCHHHHHHHhhhcccccccEEE-ecccCcccceEEEeCCc
Q 003715 291 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLE-SGTLGAKCNTQMVIPHL 358 (800)
Q Consensus 291 ~~~~~v~~~~~~~~~~~f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~pli~-sg~~G~~G~v~~iip~~ 358 (800)
.. .++-|+++|+++- ....-++.+.- .+...|..+|| |+..-+.-.|.+++|.+
T Consensus 57 ~l------------~~~~f~~vDia~f-ag~~~s~~~ap-~a~~aG~~VIDnSsa~Rmd~dVPLVVPEV 111 (322)
T PRK06901 57 AP------------EEVEWADFNYVFF-AGKMAQAEHLA-QAAEAGCIVIDLYGICAALANVPVVVPSV 111 (322)
T ss_pred EC------------CccCcccCCEEEE-cCHHHHHHHHH-HHHHCCCEEEECChHhhCCCCCCeecccC
Confidence 11 1233589999977 55545555554 66677888885 55566666777887765
No 490
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=66.64 E-value=4.9 Score=47.69 Aligned_cols=34 Identities=38% Similarity=0.583 Sum_probs=29.9
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
...|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~------~v~viE~~~ 56 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGV------PVVLLDDDD 56 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC------cEEEEeCCC
Confidence 3579999999999999999999999 788888653
No 491
>PRK06834 hypothetical protein; Provisional
Probab=66.59 E-value=4.4 Score=47.47 Aligned_cols=34 Identities=32% Similarity=0.514 Sum_probs=30.4
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
...|+|||+|..|..+|-.|++.|+ +++|+|...
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~------~v~vlEr~~ 36 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGV------DVAIVERRP 36 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCC------cEEEEecCC
Confidence 4579999999999999999999999 889998654
No 492
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=66.55 E-value=5 Score=44.68 Aligned_cols=33 Identities=24% Similarity=0.488 Sum_probs=29.5
Q ss_pred cEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcc
Q 003715 214 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVI 252 (800)
Q Consensus 214 ~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~I 252 (800)
.|+|||+|..|+.+|..|++.|+ +++|+|.+.-
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~------~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGL------KIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCC------EEEEEeCCCc
Confidence 38999999999999999999998 8899887654
No 493
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.16 E-value=18 Score=39.94 Aligned_cols=61 Identities=16% Similarity=0.280 Sum_probs=45.4
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccccccCccCccHHHHHHHHHHHHCCCCeEEE
Q 003715 213 AKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 291 (800)
Q Consensus 213 ~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dIG~~Ka~va~~~l~~~np~v~i~~ 291 (800)
..++|-|+ .|||-|+++.|++.|. ++++.-.| ..|++.+++.+.+-.++.+|..
T Consensus 36 ~~~vVTGansGIG~eta~~La~~Ga------~Vv~~~R~-------------------~~~~~~~~~~i~~~~~~~~i~~ 90 (314)
T KOG1208|consen 36 KVALVTGATSGIGFETARELALRGA------HVVLACRN-------------------EERGEEAKEQIQKGKANQKIRV 90 (314)
T ss_pred cEEEEECCCCchHHHHHHHHHhCCC------EEEEEeCC-------------------HHHHHHHHHHHHhcCCCCceEE
Confidence 55666685 7999999999999997 77775321 2578888888888666777777
Q ss_pred eeccCCc
Q 003715 292 LQIRANP 298 (800)
Q Consensus 292 ~~~~v~~ 298 (800)
+.-.+..
T Consensus 91 ~~lDLss 97 (314)
T KOG1208|consen 91 IQLDLSS 97 (314)
T ss_pred EECCCCC
Confidence 7766653
No 494
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=66.12 E-value=5.3 Score=45.86 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=29.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
.+|.|||+|-+|..++.+|+..|. +++.+|.|.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~------~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK------QVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC------EEEEEeCCH
Confidence 589999999999999999999997 788888654
No 495
>PRK06126 hypothetical protein; Provisional
Probab=66.07 E-value=5 Score=47.50 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=29.8
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCC
Q 003715 212 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 250 (800)
Q Consensus 212 ~~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D 250 (800)
..+|+|||+|..|..+|-.|++.|+ +++|+|..
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~------~v~viEr~ 39 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGV------DSILVERK 39 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCC------cEEEEeCC
Confidence 4579999999999999999999999 78998854
No 496
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=66.03 E-value=12 Score=42.11 Aligned_cols=51 Identities=6% Similarity=0.087 Sum_probs=36.9
Q ss_pred hccCCCEEEEccCCHHHHHHHhhhccccccc--EEE-ecccCcccceEEEeCCcc
Q 003715 308 FWENLNVVVNALDNVNARLYIDQRCLYFQKP--LLE-SGTLGAKCNTQMVIPHLT 359 (800)
Q Consensus 308 f~~~~dvVi~a~Dn~~ar~~v~~~c~~~~~p--li~-sg~~G~~G~v~~iip~~t 359 (800)
-|.++|+|+.|.++.-++.+.-. +...|.+ +|+ ++..-+.-.+.+++|.+.
T Consensus 61 ~~~~vDivffa~g~~~s~~~~p~-~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN 114 (366)
T TIGR01745 61 ALKALDIIITCQGGDYTNEIYPK-LRESGWQGYWIDAASSLRMKDDAVIILDPVN 114 (366)
T ss_pred cccCCCEEEEcCCHHHHHHHHHH-HHhCCCCeEEEECChhhhcCCCCCEEeCCcC
Confidence 35789999999988877766554 5567744 674 556667777888888764
No 497
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=65.93 E-value=8 Score=43.83 Aligned_cols=43 Identities=23% Similarity=0.345 Sum_probs=0.0
Q ss_pred hcCHHHHHHHHc-----CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCC
Q 003715 201 VFGSKLQKKLEE-----AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 249 (800)
Q Consensus 201 l~G~~~q~~L~~-----~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~ 249 (800)
+...+...+|+. .+|+|||.|.+|+|+|..|+..|. ++++++.
T Consensus 128 ~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~------~Vtlv~~ 175 (396)
T PRK09754 128 LRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRC------KVTVIEL 175 (396)
T ss_pred cCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCC------eEEEEec
No 498
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=65.79 E-value=6.2 Score=40.07 Aligned_cols=44 Identities=27% Similarity=0.266 Sum_probs=33.3
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCcccccCCccccc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFL 262 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~Ie~sNLnRQfl 262 (800)
+||.|+|+|=+|..+|-.||..|. +++.+|.|.--...+|+-.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~------~V~g~D~~~~~v~~l~~g~~ 44 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH------QVIGVDIDEEKVEALNNGEL 44 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS------EEEEE-S-HHHHHHHHTTSS
T ss_pred CEEEEECCCcchHHHHHHHHhCCC------EEEEEeCChHHHHHHhhccc
Confidence 489999999999999999999998 89999988766666666443
No 499
>PRK07190 hypothetical protein; Provisional
Probab=65.77 E-value=5.1 Score=46.97 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=29.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcccCCCCcceeecCCCc
Q 003715 213 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 251 (800)
Q Consensus 213 ~~VlIvG~GgiG~evlknLal~Gv~~~~~g~i~liD~D~ 251 (800)
..|+|||+|..|..+|-.|++.|+ +++|+|...
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi------~V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGL------NTVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCC------CEEEEeCCC
Confidence 469999999999999999999999 789998664
No 500
>PRK08703 short chain dehydrogenase; Provisional
Probab=65.64 E-value=5.8 Score=41.07 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=28.2
Q ss_pred HHcCcEEEEcC-CchHHHHHHHHHHhcccCCCCcceeecC
Q 003715 210 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 248 (800)
Q Consensus 210 L~~~~VlIvG~-GgiG~evlknLal~Gv~~~~~g~i~liD 248 (800)
|.+++|+|.|+ |++|.++++.|+..|. ++++++
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~------~V~~~~ 37 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGA------TVILVA 37 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCC------EEEEEe
Confidence 55678999985 9999999999999987 677765
Done!