Query 003715
Match_columns 800
No_of_seqs 360 out of 2288
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 17:54:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003715.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1764-1768//hhsearch_pdb/003715hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cmm_A Ubiquitin-activating en 1.0 1 1 1526.0 66.7 792 1-799 210-1015(1015)
2 1y8q_B Anthracycline-, ubiquit 1.0 1 1 860.0 28.7 518 197-785 2-535 (640)
3 1z7l_A Ubiquitin-activating en 1.0 1 1 543.5 24.6 268 368-642 9-276 (276)
4 2nvu_B Maltose binding protein 1.0 1 1 478.1 28.2 361 194-761 392-779 (805)
5 1tt5_B Ubiquitin-activating en 1.0 1 1 470.8 22.8 360 193-761 7-408 (434)
6 1tt5_A APPBP1, amyloid protein 1.0 1 1 312.2 25.0 192 193-394 13-204 (531)
7 1y8q_A Ubiquitin-like 1 activa 1.0 1 1 297.4 19.2 171 182-367 10-180 (346)
8 3cmm_A Ubiquitin-activating en 1.0 1 1 284.7 11.2 185 192-394 7-194 (1015)
9 3h8v_A Ubiquitin-like modifier 1.0 1 1 276.6 13.7 165 192-366 13-194 (292)
10 1zud_1 Adenylyltransferase THI 1.0 1 1 271.4 12.4 170 184-366 2-174 (251)
No 1
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=1525.98 Aligned_cols=792 Identities=44% Similarity=0.813 Sum_probs=736.9
Q ss_pred CCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 98878998476999189328992378876875568279998630175136678884399863235676679951599999
Q 003715 1 MTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAF 80 (800)
Q Consensus 1 m~~ln~~~~~~i~~~~~~~f~i~~dt~~~~~y~~gg~~~qvK~p~~~~f~sL~e~L~~p~~~~~~d~~k~~~~~~l~~~l 80 (800)
|+|+|++++++|++++|++|.| +||+.|++|++||+++|||+|++++|+||++++.+| .++..++.|++++.++|++|
T Consensus 210 m~elN~~e~~~i~~~~p~~f~I-~Dts~~~~yv~~g~~~qvk~p~~i~f~~l~~~l~~p-~~l~~d~~k~~~~~~l~~~~ 287 (1015)
T 3cmm_A 210 LDKLNDGTLFKVEVLGPFAFRI-GSVKEYGEYKKGGIFTEVKVPRKISFKSLKQQLSNP-EFVFSDFAKFDRAAQLHLGF 287 (1015)
T ss_dssp SGGGGSSCCEECEEEETTEEEC-SCCTTTCCCCBCCEEEECCCCEEECCCCHHHHHHSC-CBCCSCGGGTHHHHHHHHHH
T ss_pred CHHHCCCCCEEEEECCCCEEEE-CCCCHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCH-HHHHHHHHCCCCCHHHHHHH
T ss_conf 1421676664669758860685-462100566327546982077643788899997385-77777775058626999999
Q ss_pred HHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-C-CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999994-999999999899999999999987306531-0-112799999998520365442579864567788877
Q 003715 81 QALDKFIQEL-GRFPVAGSEEDAQKIISLFTNINDNLADER-V-EEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVK 157 (800)
Q Consensus 81 ~aL~~f~~~~-gr~P~~~~~~D~~~l~~la~~i~~~~~~~~-~-~~i~~~li~~~~~~~~~el~Pv~AiiGGivaQEVIK 157 (800)
+||++|+++| ||+|++++.+|++++.+++++++.+.+... . ..+++++++++++++++|++||||++||++||||||
T Consensus 288 ~Al~~F~~~~~gr~P~~~~~~D~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~el~pvaA~iGGivAQEVIK 367 (1015)
T 3cmm_A 288 QALHQFAVRHNGELPRTMNDEDANELIKLVTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVVAFFGGLVAQEVLK 367 (1015)
T ss_dssp HHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHH
T ss_conf 99999999658999999998999999999999998628885432347699999999864866170888853457999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 21286422445432455555899---999956779844710145640398999998709399983793389999999981
Q 003715 158 ACSGKFHPLLQFFYFDSVESLPS---EPLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALM 234 (800)
Q Consensus 158 ait~k~~Pi~n~~~~d~~~~l~~---~~l~~~~~~~~~~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~evlknLa~~ 234 (800)
+|||||+||+||||||+++++++ ..++++++.+.++||+||+++||.++|++|++++|+||||||+||+++++||++
T Consensus 368 aiT~kf~Pi~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~Ry~rq~~l~G~~~q~kL~~~~VlvVGaGGlGsevlk~La~~ 447 (1015)
T 3cmm_A 368 ACSGKFTPLKQFMYFDSLESLPDPKNFPRNEKTTQPVNSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALL 447 (1015)
T ss_dssp HHHCBSCCCCSEEEEECGGGSCCTTTSCCSTTTTSCCSSTTHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCEEEECCHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHCCHHHHHHHHCCEEEEEECCHHHHHHHHHHHHC
T ss_conf 85047776201688633653033345787734303222001337874499999998619599991677999999999973
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC--EEEEEECCCCCCHHCCCCHHHCCCC
Q ss_conf 14689985316417992355677545565567557318999999999779997--6998644579640002310110488
Q 003715 235 GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL--NTEALQIRANPETENVFNDTFWENL 312 (800)
Q Consensus 235 Gv~~~~~g~i~iiD~D~Ie~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~i--~i~~~~~~i~~~~~~~~~~~f~~~~ 312 (800)
||+||+.|+|+|+|+|+|+.|||||||||+.+|||++||++|+++++++||++ +|+++..++.++++.+++++|++++
T Consensus 448 Gv~~g~~G~i~lvD~D~Ve~SNLnRQ~lf~~~dvG~~Ka~~aa~~l~~iNP~v~~~v~~~~~~i~~~~~~~~~~~~~~~~ 527 (1015)
T 3cmm_A 448 GLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESL 527 (1015)
T ss_dssp TTTCSTTCEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCGGGTTTEEEECCCCSGGGTTTSCHHHHHHC
T ss_pred CCCCCCCCEEEEEECCEECCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHCCHHHHCCC
T ss_conf 86758998699980988442003432167924577799999999999878887664999964247303322027664269
Q ss_pred CEEEECCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 89999268989989985301235543898443686561279818854545778899999999722468999940368978
Q 003715 313 NVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWA 392 (800)
Q Consensus 313 diVi~alDn~~ar~~i~~~c~~~~~Pli~~g~~G~~G~v~~iip~~t~~y~~~~~~~~~~~p~ctl~~fP~~~~h~i~wa 392 (800)
|+|++|+||+++|+++++.|+.+++|+|++|+.|++|++++++|+.|+||.|..+|+++++|.||+++||+.++|||+||
T Consensus 528 D~Vi~a~Dn~~aR~~ln~~c~~~~~Pli~~g~~G~~G~v~v~~p~~t~cy~c~~dp~~~~~P~Ctl~~~P~~~~h~i~wa 607 (1015)
T 3cmm_A 528 DFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKIDHTIAWA 607 (1015)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECTTTBCCGGGSCCCCCCCCCHHHHHTCCCSHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99998989999999999878874986899577756665389947999862778999888898634268999928999999
Q ss_pred HHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86633310269266752018907899986621863577779999999533112463679999999999998989999642
Q 003715 393 RSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTF 472 (800)
Q Consensus 393 ~~~F~~~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~dc~~~a~~~f~~~F~~~I~~Ll~ 472 (800)
|++|+++|...++++|+|+++| .|.+.+.+.+..+ .+.|+.+++.+ ..+|.+|++|++||+.+|+++|+++|+|||+
T Consensus 608 ~~~f~~lf~~~~~~~~~~l~~~-~~~~~~~~~~~~~-~~~l~~~~~~l-~~~~~~~~~c~~~a~~~f~~~F~~~I~~Ll~ 684 (1015)
T 3cmm_A 608 KSLFQGYFTDSAENVNMYLTQP-NFVEQTLKQSGDV-KGVLESISDSL-SSKPHNFEDCIKWARLEFEKKFNHDIKQLLF 684 (1015)
T ss_dssp HHHHHHHHTHHHHHHHHHHHCT-THHHHHHC---CC-HHHHHHHHHHH-HSCCSSHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHCCCHH-HHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999865456665420481-3688987412102-78999999975-3187758999999999999998899999997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 099986577998765589999986224789525689999999999998199999--888895689997510378987888
Q 003715 473 TFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIP--DWVKSPVKLADAVNKVIVPDFQPK 550 (800)
Q Consensus 473 ~fp~d~~t~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~--~~~~~~~~~~~~~~~~~~~~f~~~ 550 (800)
+||+|++|++|++||+||||+|+||+||..|++|++||.++|+|+|.+|||+.+ .|..+.+.+.++++++.+|+|.|+
T Consensus 685 ~~p~d~~~~~g~~fW~~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~f~~~ 764 (1015)
T 3cmm_A 685 NFPKDAKTSNGEPFWSGAKRAPTPLEFDIYNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPN 764 (1015)
T ss_dssp HSCTTCBCSTTCBSSCTTCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSSTTSSCCHHHHHHHHTTCCCCCCCCC
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 48831013567623357888998703489877889999999876787639997422345799999999860767776786
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88631343000146789977089999999999985311899998898300035898705689999754333514899865
Q 003715 551 ENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVD 630 (800)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFV~aasNLRA~ny~I~~~~ 630 (800)
++.+|..++++...+....++.+.++.|.+++++.... .+.++.|++||||||+|+|||||+|||||||+||+||++|
T Consensus 765 ~~~ki~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~FeKDDd~n~h~dFi~aasNlRa~ny~I~~~~ 842 (1015)
T 3cmm_A 765 ANLKIQVNDDDPDPNANAANGSDEIDQLVSSLPDPSTL--AGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETAD 842 (1015)
T ss_dssp SSCCCCSSTTSSCC---------CCHHHHTTSCCGGGG--TTCCCCCCCCCTTCTTSSHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCCEECCCHHHHCCCCCCCCCHHHHHHHHHHHCCCHHC--CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 57620145322010014544389999999974021000--3577785156657883028999999988889874999668
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEE
Q ss_conf 8799988366663124556688898999999986089986532100113445622356999996443488751-289899
Q 003715 631 KLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSW-TVWDRW 709 (800)
Q Consensus 631 ~~~~K~iAG~IIPAIaTTtA~VaGl~~lEl~K~l~~~~~~~~~rn~f~nla~p~~~~~eP~~~~~~~~~~~~~-t~wdr~ 709 (800)
|+++|+||||||||||||||+||||+|+|+||++++.++++.|||+|+|||+|++.++||.+|++.+|.+++| |+||||
T Consensus 843 ~~~~k~iaG~IIPAIaTT~AivaGl~~lE~~K~~~~~~~~~~~kn~f~nla~~~~~~~~p~~~~~~~~~~~~~~t~wd~~ 922 (1015)
T 3cmm_A 843 RQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTDIEQYKNGFVNLALPFFGFSEPIASPKGEYNNKKYDKIWDRF 922 (1015)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCEEEEETTTTEEEEECCCBCCEEEETTEEEETTTCEE
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 99999984773751001899999999999999974566424445588860677114447888888877778777578999
Q ss_pred EECCCCCHHHHHHHHHHC-CCCEEEEECCCCEEECCCCC--CHHHCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEEECCC
Q ss_conf 929988699999999985-99222420297201216996--312102681889988531378999701999999963399
Q 003715 710 ILRDNPTLRQLLQWLQDK-GLNAYSISYGSCLLFNSMFP--RHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDED 786 (800)
Q Consensus 710 ~i~~~~TL~~li~~~~~~-~~~~~~i~~g~~~ly~~~~~--~~~~~l~~~l~~l~~~~~~~~l~~~~~~l~l~v~~~d~~ 786 (800)
++++++||++|+++|+++ |++++||+.|+++||++++| ++++||+++|++|++.++++++|++++||+|+++|+|++
T Consensus 923 ~v~~~~Tl~~li~~~~~~~~~~~~~i~~~~~~ly~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~ 1002 (1015)
T 3cmm_A 923 DIKGDIKLSDLIEHFEKDEGLEITMLSYGVSLLYASFFPPKKLKERLNLPITQLVKLVTKKDIPAHVSTMILEICADDKE 1002 (1015)
T ss_dssp EEESCCBHHHHHHHHHHTTCCEEEEEEETTEEEEETTCCHHHHHHHTTSBHHHHHHHHSSSCCCSSCCEEEEEEEEECTT
T ss_pred EECCCCCHHHHHHHHHHHHCCCCEEECCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEEECCCC
T ss_conf 97999839999999999859861343268867983488724457760687999987505676898731899999953899
Q ss_pred CCCCCCCEEEEEE
Q ss_conf 9854468079992
Q 003715 787 DNDIDIPQISIYF 799 (800)
Q Consensus 787 ~~dv~~P~v~~~~ 799 (800)
++|+++|+|||+|
T Consensus 1003 ~~d~~~p~v~~~~ 1015 (1015)
T 3cmm_A 1003 GEDVEVPFITIHL 1015 (1015)
T ss_dssp SCEECCCEEEEEC
T ss_pred CCCCCCCCEEEEC
T ss_conf 9867787479859
No 2
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=1.00 E-value=1 Score=859.98 Aligned_cols=518 Identities=25% Similarity=0.390 Sum_probs=425.8
Q ss_pred HHHHHCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 45640398999998709399983793389999999981146899853164179923556775455655675573189999
Q 003715 197 AQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVA 276 (800)
Q Consensus 197 rqi~l~G~~~q~~L~~~~VlivG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQflf~~~diG~~Ka~va 276 (800)
.|+++||.++|++|++++|+||||||+||+++++||++|| |+|+|+|+|+|+.|||+|||||+.+|||++||+++
T Consensus 2 ~qi~l~G~e~Q~kL~~s~VlVVGaGGLGsevak~La~aGV-----G~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaa 76 (640)
T 1y8q_B 2 ALSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGF-----SHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVA 76 (640)
T ss_dssp ----CCCHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTC-----CEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHH
T ss_pred CHHHHCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCC-----CEEEEECCCEECHHHCCCCCCCCHHHCCHHHHHHH
T ss_conf 6165449999999856969998768899999999998489-----73799539987722048771779467482999999
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCHHCCCCHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEC
Q ss_conf 99999779997699864457964000231011048889999268989989985301235543898443686561279818
Q 003715 277 ASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIP 356 (800)
Q Consensus 277 ~~~l~~~np~i~i~~~~~~i~~~~~~~~~~~f~~~~diVi~alDn~~ar~~i~~~c~~~~~Pli~~g~~G~~G~v~~iip 356 (800)
+++++++||+++|+++..++...+ ++.+|+.++|+|++|+||+++|+++++.|+.+++|+|++|+.|+.|++++++|
T Consensus 77 a~~L~~iNP~v~V~a~~~~i~~~~---~~~~~~~~~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~g~~G~~G~v~vi~p 153 (640)
T 1y8q_B 77 KESVLQFYPKANIVAYHDSIMNPD---YNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKK 153 (640)
T ss_dssp HHHHHTTCTTCEEEEEESCTTSTT---SCHHHHTTCSEEEECCSCHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHCCCCEEEEEECCCCHHH---HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECC
T ss_conf 999998789974999825665023---24766248999998988989999999999874998899987314532899889
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCH--HHHHHHCCCHHH-HHHHHHHCCCHHHHHHH
Q ss_conf 854545778899999999722468999940368978866333102692--667520189078-99986621863577779
Q 003715 357 HLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP--AEVNAYLTSPTE-YASAMKNAGDAQARDNL 433 (800)
Q Consensus 357 ~~t~~y~~~~~~~~~~~p~ctl~~fP~~~~h~i~wa~~~F~~~F~~~~--~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l 433 (800)
+.|+||.|..+|+++.+|.||++++|+.++|||+||++.|+++|+..+ ++++.++++|.. +... ......+..+.+
T Consensus 154 ~~t~Cy~C~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~f~~lf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 232 (640)
T 1y8q_B 154 GVTECYECHPKPTQRTFPGATIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPEAAWEPT-EAEARARASNED 232 (640)
T ss_dssp TTSCCTTSSCCCCCCCCCTTTTTSCCCSHHHHHHHHHHHHHHHHSCCCGGGCCSCCTTCTTSCCC---------------
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHH-HHHHHHHHHHHH
T ss_conf 9998745578898765120023489886277999999999998478630334201323445554454-431001234456
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 999999533112463679999999-9999989899996420999865779987655899999862247895256899999
Q 003715 434 DRVLECLDKERCETFQDCITWARL-RFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMA 512 (800)
Q Consensus 434 ~~~~~~l~~~~~~~~~dc~~~a~~-~f~~~F~~~I~~Ll~~fp~d~~t~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~ 512 (800)
+.+... ...+|.+|+.||+. +|+++|+++|+|||++ ++||++ ||+|+||.||..++.|......
T Consensus 233 ~~~~~~----~~~~~~~~~~~a~~~~f~k~F~~~I~~Ll~~----------~~fW~~-kr~P~pl~fd~~~~~~~~~~~~ 297 (640)
T 1y8q_B 233 GDIKRI----STKEWAKSTGYDPVKLFTKLFKDDIRYLLTM----------DKLWRK-RKPPVPLDWAEVQSQGEETNAS 297 (640)
T ss_dssp -----------CHHHHHHTTSCHHHHHHHHHTHHHHHHTTC----------GGGCSS-SCCCCCCCHHHHHHC-------
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCCCC-CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 678887----6655777676778889999875689999738----------512268-9899886557666223544345
Q ss_pred -HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf -9999999819999988889568999751037898788888631343000146789977089999999999985311899
Q 003715 513 -ASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPT 591 (800)
Q Consensus 513 -~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 591 (800)
.+++ ..+|++ +.+.++..+......+.++.|...++...
T Consensus 298 ~~~~~--~~~~~~---------------------------------d~~~~~~~~~~~~~~~~~~~l~~~l~~~~----- 337 (640)
T 1y8q_B 298 DQQNE--PQLGLK---------------------------------DQQVLDVKSYARLFSKSIETLRVHLAEKG----- 337 (640)
T ss_dssp ---------CCCG---------------------------------GGSCCCHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred CCCCC--CCCCCC---------------------------------HHHHCCHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_conf 31124--335887---------------------------------24434865655667999999998731014-----
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99889830003589870568999975433351489986587999883666631245566888989999999860899865
Q 003715 592 GYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLE 671 (800)
Q Consensus 592 ~~~~~p~~FeKDDd~n~hidFV~aasNLRA~ny~I~~~~~~~~K~iAG~IIPAIaTTtA~VaGl~~lEl~K~l~~~~~~~ 671 (800)
++.|++||||||+ |||||+|||||||+||+||++||+++|+||||||||||||||+||||+|+|+||++++ +++
T Consensus 338 --~~~~~~FdKDDd~--h~dFV~aaaNlRA~~y~I~~~~~~~~K~iAG~IIPAIATTnAiVaGl~~lE~~Kvl~~--~~~ 411 (640)
T 1y8q_B 338 --DGAELIWDKDDPS--AMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSG--KID 411 (640)
T ss_dssp --TTCCCCCCTTCHH--HHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHTT--CGG
T ss_pred --CCCCCCCCCCCHH--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC--CHH
T ss_conf --5777661789888--9899999988899975998689999998847735411027999999999999998743--177
Q ss_pred CCCCCCCCCCCC----CCCCCCCCCCCCCCCCC-CCCEEEEEEEECCCCCHHHHHHHH-HHC-CCCEEEEEC---CCCEE
Q ss_conf 321001134456----22356999996443488-751289899929988699999999-985-992224202---97201
Q 003715 672 DYRNTFANLALP----LFSMAEPVPPKVFKHQD-MSWTVWDRWILRDNPTLRQLLQWL-QDK-GLNAYSISY---GSCLL 741 (800)
Q Consensus 672 ~~rn~f~nla~p----~~~~~eP~~~~~~~~~~-~~~t~wdr~~i~~~~TL~~li~~~-~~~-~~~~~~i~~---g~~~l 741 (800)
.|||+|+|++.| ++++++|.+|++.|+.+ ..+++|+++++. ++||++|++++ +++ |++++||+. |.++|
T Consensus 412 ~~kn~f~n~a~~~~~~~~~~~~p~~p~~~c~vc~~~~~~~~~~~~~-~~TL~~li~~~~~~~~~l~~~~is~~~~~~~~l 490 (640)
T 1y8q_B 412 QCRTIFLNKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVRLNVH-KVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTIL 490 (640)
T ss_dssp GCEEEEECSSCCTTSEEEEEEECCCCCTTCTTTSSSCEEEEEECTT-TCBHHHHHHCCCCCCTCCSSCEEEESSSSCCEE
T ss_pred HHHHHHEEECCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCEE
T ss_conf 6422531303577776785166679899975658742799999479-780999999998886199786699976998388
Q ss_pred ECCCCCCHHHCCCCCHHHH-HHHHHCCCCCCCEEEEEEEEEEECC
Q ss_conf 2169963121026818899-8853137899970199999996339
Q 003715 742 FNSMFPRHKERMDKKVVDL-VRDVAKAELPPYRQHFDVVVACVDE 785 (800)
Q Consensus 742 y~~~~~~~~~~l~~~l~~l-~~~~~~~~l~~~~~~l~l~v~~~d~ 785 (800)
|+.+++++++||+++|++| ++..++..++.....+.|++.+.-.
T Consensus 491 y~~~~~~~~~~l~~~l~el~v~~~~~~~v~d~~~~~~~~i~~~~~ 535 (640)
T 1y8q_B 491 ISSEEGETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINILHS 535 (640)
T ss_dssp ECSSSSSSTTGGGSBGGGGTCCTTCEEEEEETTTTEEEEEEEEEC
T ss_pred EECCCHHHHHHHHCCHHHHCCCCCCEEEECCCCCCEEEEEEEEEC
T ss_conf 853666667764183887283578589846877547999999956
No 3
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=1.00 E-value=1 Score=543.52 Aligned_cols=268 Identities=41% Similarity=0.748 Sum_probs=242.3
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999997224689999403689788663331026926675201890789998662186357777999999953311246
Q 003715 368 PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCET 447 (800)
Q Consensus 368 ~~~~~~p~ctl~~fP~~~~h~i~wa~~~F~~~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 447 (800)
.-.+++|+|||++||+.|+|||+|||++|+++|+..++++|.|+++| .|++.+.+.+..+..+.|+.+++.|...+|.+
T Consensus 9 ~~~ks~P~CTlrsfP~~i~HcI~WAr~lFe~lF~~~~~~~n~~l~dp-~~~~~~~~~~~~~~~~~l~~i~~~L~~~~p~~ 87 (276)
T 1z7l_A 9 EFEKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDS-KFVERTLRLAGTQPLEVLEAVQRSLVLQRPQT 87 (276)
T ss_dssp -----CCHHHHHTCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHTTCS-HHHHHHHTSSTTHHHHHHHHHHHHHTTTCCSS
T ss_pred CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCH-HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 47998941136788997047999999999898767887888764080-77888874230146899999999986238874
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 36799999999999989899996420999865779987655899999862247895256899999999999981999998
Q 003715 448 FQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPD 527 (800)
Q Consensus 448 ~~dc~~~a~~~f~~~F~~~I~~Ll~~fp~d~~t~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~ 527 (800)
|++|++|||.+|+++|+++|+|||++||+|++|++|++|||||||+|+||+||..|++|++||.++|+|+|.+|||+..
T Consensus 88 ~~~c~~~Ar~~F~k~F~~~I~qLL~~fP~D~~t~~G~~fWsg~Kr~P~PL~fd~~~~~h~~fI~aaa~L~A~~~gi~~~- 166 (276)
T 1z7l_A 88 WGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGLTGS- 166 (276)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHSCTTCBCTTSCBSSCSSCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-
T ss_conf 8899999999999999789999998488421356787156789989988335987667999999999999998399977-
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88895689997510378987888886313430001467899770899999999999853118999988983000358987
Q 003715 528 WVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKDDDTN 607 (800)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKDDd~n 607 (800)
.+.+.+.++++++.+|+|.|+++++|.+++++...++... +.+.++.|..+|++.... .+.++.|++||||||+|
T Consensus 167 --~d~~~i~~~~~~~~vp~f~p~~~~ki~~~e~~~~~~~~~~-~~~~~~~L~~~l~~~~~~--~~~~~~pl~FeKDDd~N 241 (276)
T 1z7l_A 167 --QDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASV-DDSRLEELKATLPSPDKL--PGFKMYPIDFEKDDDSN 241 (276)
T ss_dssp --CCHHHHHHHHHTCCCCCCCCCSSCCCCSSSCCC------C-CSHHHHHHHHHSCCGGGS--TTCCCCCCCCCSSCTTS
T ss_pred --CCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCHHCCCC-CHHHHHHHHHHHHHHHHC--CCCCCCCCCEECCCCCC
T ss_conf --7999999997457778867765660025332201000333-499999999985232211--46667873113588865
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 05689999754333514899865879998836666
Q 003715 608 FHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRII 642 (800)
Q Consensus 608 ~hidFV~aasNLRA~ny~I~~~~~~~~K~iAG~II 642 (800)
+|||||+|||||||+||+||++||+++|+||||||
T Consensus 242 ~hmdFItAaSNLRA~nY~I~~~dr~~~K~IAG~II 276 (276)
T 1z7l_A 242 FHMDFIVAASNLRAENYDISPADRHKSKLIAGKII 276 (276)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCCCHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
T ss_conf 28999999999899985998678999998817769
No 4
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=1.00 E-value=1 Score=478.06 Aligned_cols=361 Identities=27% Similarity=0.444 Sum_probs=296.9
Q ss_pred CCHHHHHHCCHHHHHHH-HCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 10145640398999998-70939998379338999999998114689985316417992355677545565567557318
Q 003715 194 RYDAQISVFGSKLQKKL-EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 272 (800)
Q Consensus 194 Rydrqi~l~G~~~q~~L-~~~~VlivG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQflf~~~diG~~K 272 (800)
+|...-..+|.+.|+++ ++++|+||||||+||+++++|+++|| |+|+|+|+|+|+.|||+|||||+.+|||++|
T Consensus 392 ~~~~~~~~~g~~~~~~~l~~~~vlvvG~GglG~~~~~~L~~~Gv-----g~i~l~D~d~v~~snl~rq~~~~~~~vg~~K 466 (805)
T 2nvu_B 392 PFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGF-----RQIHVIDMDTIDVSNLNRQFLFRPKDIGRPK 466 (805)
T ss_dssp TTSCTTCCCCSHHHHHHHHTCCEEEECCSSHHHHHHHHHHTTTC-----CEEEEEECCBCCGGGGGTCTTCCGGGTTSBH
T ss_pred CCCCCCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCC-----CCEEEECCCEECCCCCCCCCCCCHHHCCCHH
T ss_conf 88886567798999998708969998987789999999998489-----9489987983443345546345632267829
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCHHCCCCHHHCCCCCEEEECCCCHHHHHHHHHHCCCC------------CCCEE
Q ss_conf 999999999779997699864457964000231011048889999268989989985301235------------54389
Q 003715 273 STVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF------------QKPLL 340 (800)
Q Consensus 273 a~va~~~l~~~np~i~i~~~~~~i~~~~~~~~~~~f~~~~diVi~alDn~~ar~~i~~~c~~~------------~~Pli 340 (800)
+++++++++++||+++|+++..++...+ .++++++|+||+|+||+++|+++|+.|+.+ ++|+|
T Consensus 467 a~~~~~~l~~~np~~~v~~~~~~~~~~~-----~~~~~~~d~vv~~~d~~~~r~~in~~~~~~~~~~~g~~~~~~~~p~i 541 (805)
T 2nvu_B 467 AEVAAEFLNDRVPNCNVVPHFNKIQDFN-----DTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLI 541 (805)
T ss_dssp HHHHHHHHHHHSTTCEEEEEESCGGGSC-----HHHHHTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEE
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCH-----HHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 9999999997789977999955556517-----88974399999998997999999999999763024432202477579
Q ss_pred EECCCCCCCCEEEEECCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHH
Q ss_conf 844368656127981885454577889--999999972246899994036897886633310269266752018907899
Q 003715 341 ESGTLGAKCNTQMVIPHLTENYGASRD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYA 418 (800)
Q Consensus 341 ~~g~~G~~G~v~~iip~~t~~y~~~~~--~~~~~~p~ctl~~fP~~~~h~i~wa~~~F~~~F~~~~~~~~~~l~~~~~~~ 418 (800)
++|+.|+.|++.+++|+.++||.|..+ |+....|+|+++++|+.++|||.||+..
T Consensus 542 ~~~~~g~~G~~~~~~p~~~~c~~c~~~~~p~~~~~~~c~~~~~~~~~~~~i~~a~~~----------------------- 598 (805)
T 2nvu_B 542 DGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRML----------------------- 598 (805)
T ss_dssp EEEEETTEEEEEEECTTTSCCTTTSGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHT-----------------------
T ss_pred EECCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-----------------------
T ss_conf 932566732688988999876004677789877787553678999950799999986-----------------------
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98662186357777999999953311246367999999999999898999964209998657799876558999998622
Q 003715 419 SAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQ 498 (800)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~dc~~~a~~~f~~~F~~~I~~Ll~~fp~d~~t~~g~~fWs~~kr~P~pl~ 498 (800)
.|.. + + |.
T Consensus 599 ----------------------------------~~~~-----------~----------------------~--~~--- 606 (805)
T 2nvu_B 599 ----------------------------------QWPK-----------E----------------------Q--PF--- 606 (805)
T ss_dssp ----------------------------------HHHH-----------H----------------------C--TT---
T ss_pred ----------------------------------HCCC-----------C----------------------C--CC---
T ss_conf ----------------------------------4301-----------1----------------------5--99---
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 47895256899999999999981999998888956899975103789878888863134300014678997708999999
Q 003715 499 FSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINEL 578 (800)
Q Consensus 499 fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 578 (800)
T Consensus 607 -------------------------------------------------------------------------------- 606 (805)
T 2nvu_B 607 -------------------------------------------------------------------------------- 606 (805)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999853118999988983000358987056899997543335148998658799988366663124556688898999
Q 003715 579 LQKLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCL 658 (800)
Q Consensus 579 ~~~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFV~aasNLRA~ny~I~~~~~~~~K~iAG~IIPAIaTTtA~VaGl~~l 658 (800)
..|+.||+||.. |++||++++|+||..|||+..+++.+++++|+||||||||+|+|+|++++
T Consensus 607 ----------------~~~~~~d~~~~~--~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~i~p~i~~~~aiig~~~a~ 668 (805)
T 2nvu_B 607 ----------------GEGVPLDGDDPE--HIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCAT 668 (805)
T ss_dssp ----------------STTCCCCTTCHH--HHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHH
T ss_pred ----------------CCCCCCCCCCHH--HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf ----------------876667899789--99999999999999859997679999987535325521089999999999
Q ss_pred HHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHC---CCCEEEE
Q ss_conf 9999860899-86532100113445622356999996443488751289899929988699999999985---9922242
Q 003715 659 ELYKVLDGGH-KLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQDK---GLNAYSI 734 (800)
Q Consensus 659 El~K~l~~~~-~~~~~rn~f~nla~p~~~~~eP~~~~~~~~~~~~~t~wdr~~i~~~~TL~~li~~~~~~---~~~~~~i 734 (800)
|++|++.+.. ++..+. .|-.+... +...-+.++...|.. + .+.|+++.++.++||++|++++.++ +++.++|
T Consensus 669 e~ik~l~~~~~~l~~~~-~~~~~~~~-~~~~~~~~~~~~C~~-C-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (805)
T 2nvu_B 669 EVFKIATSAYIPLNNYL-VFNDVDGL-YTYTFEAERKENCPA-C-SQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAI 744 (805)
T ss_dssp HHHHHHHCSSCCCCSEE-EEECSBSC-EEEEECCCCCTTCTT-T-SCCCEEEEECTTSBHHHHHHHHHHCTTTCCSSCEE
T ss_pred HHHHHHHCCCCCCCCEE-EECCCCCC-CCCCCCCCCCCCCCE-E-CCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 99999743564667327-76378774-222346788999970-0-76458999888671999999998621447436467
Q ss_pred EC----CCCEEECCCCCC----HHHCCCCCHHHHH
Q ss_conf 02----972012169963----1210268188998
Q 003715 735 SY----GSCLLFNSMFPR----HKERMDKKVVDLV 761 (800)
Q Consensus 735 ~~----g~~~ly~~~~~~----~~~~l~~~l~~l~ 761 (800)
+. |.++||+.++|+ +++||+++|++|.
T Consensus 745 ~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~ 779 (805)
T 2nvu_B 745 TATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELG 779 (805)
T ss_dssp EEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTT
T ss_pred EEECCCCCCEEEECCCCCHHHHHHHHHCCCHHHCC
T ss_conf 77706898689962763201455765128998819
No 5
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=1.00 E-value=1 Score=470.76 Aligned_cols=360 Identities=28% Similarity=0.462 Sum_probs=292.7
Q ss_pred CCCHHHHHHCC-------------HHHHH-HHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 71014564039-------------89999-98709399983793389999999981146899853164179923556775
Q 003715 193 SRYDAQISVFG-------------SKLQK-KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLS 258 (800)
Q Consensus 193 ~Rydrqi~l~G-------------~~~q~-~L~~~~VlivG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLn 258 (800)
.||+++-.+|+ .+.++ .|++++|+||||||+||+++++||++|| |+|+|+|+|+|+.|||+
T Consensus 7 ~r~~~vntl~~~~g~~~g~gf~~g~e~~~~~L~~~~VlvvG~GGlGs~va~~La~aGv-----g~i~ivD~D~Ve~sNL~ 81 (434)
T 1tt5_B 7 GRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGF-----RQIHVIDMDTIDVSNLN 81 (434)
T ss_dssp TTTHHHHHHHHSCCSSCCTTCCCCSSHHHHHHHTCCEEEECSSTHHHHHHHHHHHTTC-----CCEEEEECCBCCGGGTT
T ss_pred HHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCC-----CEEEEECCCEECHHCCC
T ss_conf 6610215997679850466544488899988659979998968999999999998699-----97999819880631067
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCCCHHHCCCCCEEEECCCCHHHHHHHHHHCCCC---
Q ss_conf 45565567557318999999999779997699864457964000231011048889999268989989985301235---
Q 003715 259 RQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF--- 335 (800)
Q Consensus 259 RQflf~~~diG~~Ka~va~~~l~~~np~i~i~~~~~~i~~~~~~~~~~~f~~~~diVi~alDn~~ar~~i~~~c~~~--- 335 (800)
|||||+.+|||++|+++++++++++||+++++++..++... +.++++++|+|++|+||.++|+++|+.|+.+
T Consensus 82 RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~-----~~~~~~~~DlVi~~~Dn~~~R~~in~~c~~~~~~ 156 (434)
T 1tt5_B 82 RQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDF-----NDTFYRQFHIIVCGLDSIIARRWINGMLISLLNY 156 (434)
T ss_dssp TCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEESCGGGB-----CHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCB
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHH-----HHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 77378836768399999999998468997799994555513-----6887457999999889989999999999985412
Q ss_pred ---------CCCEEEECCCCCCCCEEEEECCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCH
Q ss_conf ---------54389844368656127981885454577889--9999999722468999940368978866333102692
Q 003715 336 ---------QKPLLESGTLGAKCNTQMVIPHLTENYGASRD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP 404 (800)
Q Consensus 336 ---------~~Pli~~g~~G~~G~v~~iip~~t~~y~~~~~--~~~~~~p~ctl~~fP~~~~h~i~wa~~~F~~~F~~~~ 404 (800)
++|+|++|+.|+.|++.+++|+.++||.|..+ |+++..|+|+++++|+.++|||+||+..
T Consensus 157 ~~g~~~~~~~iPli~~~~~g~~G~v~v~~p~~t~Cy~C~~~~~p~~~~~p~Ct~~~~p~~~~h~i~~a~~i--------- 227 (434)
T 1tt5_B 157 EDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRML--------- 227 (434)
T ss_dssp SSSCBCGGGCCCEEEEEEETTEEEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHT---------
T ss_pred CCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH---------
T ss_conf 45421001498479810256303799988899897132567789867776421246776606889999887---------
Q ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 66752018907899986621863577779999999533112463679999999999998989999642099986577998
Q 003715 405 AEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGT 484 (800)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~dc~~~a~~~f~~~F~~~I~~Ll~~fp~d~~t~~g~ 484 (800)
.|..
T Consensus 228 ------------------------------------------------~~~~---------------------------- 231 (434)
T 1tt5_B 228 ------------------------------------------------QWPK---------------------------- 231 (434)
T ss_dssp ------------------------------------------------HHHH----------------------------
T ss_pred ------------------------------------------------HHHH----------------------------
T ss_conf ------------------------------------------------7765----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76558999998622478952568999999999999819999988889568999751037898788888631343000146
Q 003715 485 PFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSM 564 (800)
Q Consensus 485 ~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 564 (800)
+.|.
T Consensus 232 -------~~~~--------------------------------------------------------------------- 235 (434)
T 1tt5_B 232 -------EQPF--------------------------------------------------------------------- 235 (434)
T ss_dssp -------SCTT---------------------------------------------------------------------
T ss_pred -------HCCC---------------------------------------------------------------------
T ss_conf -------2356---------------------------------------------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCH
Q ss_conf 78997708999999999998531189999889830003589870568999975433351489986587999883666631
Q 003715 565 STGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPA 644 (800)
Q Consensus 565 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFV~aasNLRA~ny~I~~~~~~~~K~iAG~IIPA 644 (800)
..|+.||+||+. |++||++++|.||..|||+..+++.+++++|+||||
T Consensus 236 ------------------------------~~~~~~d~d~~~--~~~~v~~~a~~~~~~~gi~~~~~~~~~gv~~~iipa 283 (434)
T 1tt5_B 236 ------------------------------GEGVPLDGDDPE--HIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPA 283 (434)
T ss_dssp ------------------------------CTTCCCCTTCHH--HHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCC
T ss_pred ------------------------------CCCCCCCCCCHH--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
T ss_conf ------------------------------553345777477--899999999888987298866899998676146764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCC-CCC-CCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHH
Q ss_conf 245566888989999999860899-86532100113445622-356-999996443488751289899929988699999
Q 003715 645 IATSTAMATGLVCLELYKVLDGGH-KLEDYRNTFANLALPLF-SMA-EPVPPKVFKHQDMSWTVWDRWILRDNPTLRQLL 721 (800)
Q Consensus 645 IaTTtA~VaGl~~lEl~K~l~~~~-~~~~~rn~f~nla~p~~-~~~-eP~~~~~~~~~~~~~t~wdr~~i~~~~TL~~li 721 (800)
||||+|+|+|++++|++|++.+.. ++..+. .|..+....+ .+. ++.+.+..| .+.|+++.++.+.||++|+
T Consensus 284 ia~t~aiig~l~a~EaiK~l~g~~~~l~~~l-~~d~~~~~~~~~~~~~~~~~C~vC-----~~~~~~~~~~~~~tl~~~~ 357 (434)
T 1tt5_B 284 VASTNAVIAAVCATEVFKIATSAYIPLNNYL-VFNDVDGLYTYTFEAERKENCPAC-----SQLPQNIQFSPSAKLQEVL 357 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCSCCCCSEE-EEECSBSCEEEEECCCCCTTCTTT-----CSSCBCCCC-----CTTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEE-EEECCCCCEEEEEECCCCCCCCCC-----CCCCCEEEECCCCCHHHHH
T ss_conf 3427999999999999999838986557649-997377864678723679998844-----8887269988876389999
Q ss_pred HHHHHC---CCCEEEEEC----CCCEEECCCCC----CHHHCCCCCHHHHH
Q ss_conf 999985---992224202----97201216996----31210268188998
Q 003715 722 QWLQDK---GLNAYSISY----GSCLLFNSMFP----RHKERMDKKVVDLV 761 (800)
Q Consensus 722 ~~~~~~---~~~~~~i~~----g~~~ly~~~~~----~~~~~l~~~l~~l~ 761 (800)
+++.++ +++.++|+. |.++||+.++| ++++||+++|+||.
T Consensus 358 ~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~ 408 (434)
T 1tt5_B 358 DYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELG 408 (434)
T ss_dssp HHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----C
T ss_pred HHHHCCCCCCEECCEEEEECCCCCCEEEECCCCCHHHHHHHHHCCCHHHCC
T ss_conf 998566765317557888806898589962774211455766138998818
No 6
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=1.00 E-value=1 Score=312.25 Aligned_cols=192 Identities=22% Similarity=0.342 Sum_probs=173.2
Q ss_pred CCCHHHHHHCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 71014564039899999870939998379338999999998114689985316417992355677545565567557318
Q 003715 193 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 272 (800)
Q Consensus 193 ~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQflf~~~diG~~K 272 (800)
.||+||+++||.++|++|++++|+||||||+||++++||+++|| |+|+|+|+|+|+.|||+||||++.+|||++|
T Consensus 13 ~rY~Rqi~l~G~~~q~~L~~~~VlvvG~GGlGseiak~La~aGV-----g~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~K 87 (531)
T 1tt5_A 13 QKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 87 (531)
T ss_dssp HHTHHHHHHHHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTTTC-----SEEEEECCCBBCHHHHHHCTTCCGGGBTSBH
T ss_pred HHHHHHHHHCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCC-----CEEEEEECCEECHHHCCCCCCCCHHHCCCHH
T ss_conf 77667887629999999846969998768899999999998289-----8599994989223111567057856658689
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCHHCCCCHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCEE
Q ss_conf 99999999977999769986445796400023101104888999926898998998530123554389844368656127
Q 003715 273 STVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQ 352 (800)
Q Consensus 273 a~va~~~l~~~np~i~i~~~~~~i~~~~~~~~~~~f~~~~diVi~alDn~~ar~~i~~~c~~~~~Pli~~g~~G~~G~v~ 352 (800)
|++++++++++||++++.++...+....+ ...+|++++|+||+|+|+.++|.++++.|+.+++|+|++|+.|+.|++.
T Consensus 88 a~~a~~~l~~lNp~v~v~~~~~~~~~~~~--~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~~~~G~~G~v~ 165 (531)
T 1tt5_A 88 AEAAMEFLQELNSDVSGSFVEESPENLLD--NDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMR 165 (531)
T ss_dssp HHHHHHHHHTTCTTSBCCEESSCHHHHHH--SCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTTCCEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHH--HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEEE
T ss_conf 99999999986899769995787222545--0687851799899927999999999999998399789997547738999
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 981885454577889999999972246899994036897886
Q 003715 353 MVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARS 394 (800)
Q Consensus 353 ~iip~~t~~y~~~~~~~~~~~p~ctl~~fP~~~~h~i~wa~~ 394 (800)
+++|. ..++++. |++...++|++..+|..++||-.++-+
T Consensus 166 ~~~p~-~~~~d~~--~~~~~~~lr~~~p~P~~~~~~~~~~~~ 204 (531)
T 1tt5_A 166 IIIKE-HPVIESH--PDNALEDLRLDKPFPELREHFQSYDLD 204 (531)
T ss_dssp EECSC-EEESCCC--CSSCCCCCCSSSCCHHHHHHHHTCC--
T ss_pred EECCC-CEECCCC--CCCCCCCCCCCCCCCCCHHHHHCCCCC
T ss_conf 98288-4121578--887898600037999854554226753
No 7
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=1.00 E-value=1 Score=297.44 Aligned_cols=171 Identities=23% Similarity=0.361 Sum_probs=157.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 99956779844710145640398999998709399983793389999999981146899853164179923556775455
Q 003715 182 PLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQF 261 (800)
Q Consensus 182 ~l~~~~~~~~~~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQf 261 (800)
.+++++. .||+||+++||.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|+|.|+.+||+|||
T Consensus 10 ~l~~~~~----~rY~Rq~~l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gv-----g~itlvD~d~V~~sNL~rq~ 80 (346)
T 1y8q_A 10 GISEEEA----AQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGV-----KGLTMLDHEQVTPEDPGAQF 80 (346)
T ss_dssp CCCHHHH----HHHHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTC-----SEEEEECCCBCCSSCGGGCT
T ss_pred CCCHHHH----HHHHHHHHHHCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCC-----CEEEEEECCCCCHHHCCCCC
T ss_conf 6898999----88878888619999999848959998778899999999998599-----87999989781253188777
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCCCHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 65567557318999999999779997699864457964000231011048889999268989989985301235543898
Q 003715 262 LFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLE 341 (800)
Q Consensus 262 lf~~~diG~~Ka~va~~~l~~~np~i~i~~~~~~i~~~~~~~~~~~f~~~~diVi~alDn~~ar~~i~~~c~~~~~Pli~ 341 (800)
|++.+|||++|+++++++++++||++++.++..++... ..++++++|+||+|+|+.++|.++++.|+.+++|+|.
T Consensus 81 ~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~~-----~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~ 155 (346)
T 1y8q_A 81 LIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKK-----PESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFT 155 (346)
T ss_dssp TSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSCGGGC-----CHHHHTTCSEEEEESCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCC-----HHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 65520186889999999999478980899993445713-----5877458999998689999999999999984997899
Q ss_pred ECCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 44368656127981885454577889
Q 003715 342 SGTLGAKCNTQMVIPHLTENYGASRD 367 (800)
Q Consensus 342 ~g~~G~~G~v~~iip~~t~~y~~~~~ 367 (800)
+++.|+.|++.+.++ ...|+.|..+
T Consensus 156 ~~~~G~~G~v~~d~~-~~~~~~~~~~ 180 (346)
T 1y8q_A 156 GDVFGYHGYTFANLG-EHEFVEEKTK 180 (346)
T ss_dssp EEEEBTEEEEEEECS-EEEEEEECC-
T ss_pred EEECCCEEEEEEECC-CCCEEECCCC
T ss_conf 960664899999459-8887974898
No 8
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=284.74 Aligned_cols=185 Identities=23% Similarity=0.321 Sum_probs=160.7
Q ss_pred CCCCHHHHHHCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 47101456403989999987093999837933899999999811468998531641799235567754556556755731
Q 003715 192 NSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 271 (800)
Q Consensus 192 ~~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQflf~~~diG~~ 271 (800)
..||+||+++||.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|.|.|+.+||+|||+++.+|||++
T Consensus 7 ~~rY~Rqi~l~G~~~q~rL~~s~VlIvG~GGlGseiak~La~aGV-----g~itlvD~D~V~~sNL~RQ~l~~~~dvG~~ 81 (1015)
T 3cmm_A 7 ESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGV-----KSMTVFDPEPVQLADLSTQFFLTEKDIGQK 81 (1015)
T ss_dssp HHHHHHHHHHSCHHHHHHHTTCEEEEECCSHHHHHHHHHHHHHCC-----SEEEEECCSBCCGGGGGTCTTCCGGGTTSB
T ss_pred HHHCCCHHHHCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCC-----CEEEEECCCEECHHHHCCCCCCCHHHCCHH
T ss_conf 676233375359999998725979998878689999999998189-----769996698751633035602675553809
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCCCHHHCCCCCEEEECCC-CHHHHHHHHHHCCCCCCCEEEECCCCCCCC
Q ss_conf 8999999999779997699864457964000231011048889999268-989989985301235543898443686561
Q 003715 272 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALD-NVNARLYIDQRCLYFQKPLLESGTLGAKCN 350 (800)
Q Consensus 272 Ka~va~~~l~~~np~i~i~~~~~~i~~~~~~~~~~~f~~~~diVi~alD-n~~ar~~i~~~c~~~~~Pli~~g~~G~~G~ 350 (800)
|+++++++++++||++++.++...+.+ ++++++|+||+|.| +.++|..+++.|+..++|+|.+++.|+.|+
T Consensus 82 Ka~a~~~~L~~lNP~v~v~~~~~~l~~--------~~l~~~DvVv~~~d~~~~~r~~ln~~c~~~~iplI~~~~~G~~G~ 153 (1015)
T 3cmm_A 82 RGDVTRAKLAELNAYVPVNVLDSLDDV--------TQLSQFQVVVATDTVSLEDKVKINEFCHSSGIRFISSETRGLFGN 153 (1015)
T ss_dssp HHHHHHHHHTTSCTTSCEEECCCCCCS--------TTGGGCSEEEECTTSCHHHHHHHHHHHHHHTCEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCH--------HHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEE
T ss_conf 999999999987899759996277898--------898149899993789979999999999970898899975256799
Q ss_pred EEEEECCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 27981885454577889-9-99999972246899994036897886
Q 003715 351 TQMVIPHLTENYGASRD-P-PEKQAPMCTVHSFPHNIDHCLTWARS 394 (800)
Q Consensus 351 v~~iip~~t~~y~~~~~-~-~~~~~p~ctl~~fP~~~~h~i~wa~~ 394 (800)
+.+. ..+||.|... + +....+.|++ +-|. +.||+.+.+.
T Consensus 154 v~~d---~~~~~~c~~~~~~~p~~~~i~~i-~~p~-~v~~l~~~~h 194 (1015)
T 3cmm_A 154 TFVD---LGDEFTVLDPTGEEPRTGMVSDI-EPDG-TVTMLDDNRH 194 (1015)
T ss_dssp EEEE---CCSCEEESBSSCCCCCEEEEEEE-CTTC-EEEESTTCCC
T ss_pred EEEC---CCCCEEEEECCCCCCCCCCCCCC-CCCC-EEEEEECCCC
T ss_conf 9965---89856996179999865444578-9984-4676402114
No 9
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=1.00 E-value=1 Score=276.64 Aligned_cols=165 Identities=25% Similarity=0.390 Sum_probs=151.8
Q ss_pred CCCCHHHHHH--CCH-HHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4710145640--398-9999987093999837933899999999811468998531641799235567754556556755
Q 003715 192 NSRYDAQISV--FGS-KLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI 268 (800)
Q Consensus 192 ~~Rydrqi~l--~G~-~~q~~L~~~~VlivG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQflf~~~di 268 (800)
+.-|+||+.+ ||. ++|++|++++|+|||+||+||+++++|+++|| |+|+|+|+|+|+.|||+||+ |+.+||
T Consensus 13 ~~~y~r~i~L~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGV-----G~i~lvD~D~Ve~sNL~Rq~-~~~~di 86 (292)
T 3h8v_A 13 GLVPRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGI-----GKLLLFDYDKVELANMNRLF-FQPHQA 86 (292)
T ss_dssp -------------------CGGGGCEEEEECCSHHHHHHHHHHHHHTC-----SEEEEECCCBC-------------CCT
T ss_pred CCCCHHHHCCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCC-----CEEEEECCCCCCHHHCCCCC-CCHHHC
T ss_conf 998137550613273889998838959998858999999999998599-----88999899856754346344-895566
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCCCC-CHHCCCCHHHC-----------CCCCEEEECCCCHHHHHHHHHHCCCCC
Q ss_conf 731899999999977999769986445796-40002310110-----------488899992689899899853012355
Q 003715 269 GQAKSTVAASAAALINPHLNTEALQIRANP-ETENVFNDTFW-----------ENLNVVVNALDNVNARLYIDQRCLYFQ 336 (800)
Q Consensus 269 G~~Ka~va~~~l~~~np~i~i~~~~~~i~~-~~~~~~~~~f~-----------~~~diVi~alDn~~ar~~i~~~c~~~~ 336 (800)
|++|+++++++++++||+++++++..+++. ++. +.|+ +++|+|++|+||+++|.++|+.|+.++
T Consensus 87 G~~Ka~aa~~~L~~iNP~v~v~~~~~~l~~~~~~----~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~~~ 162 (292)
T 3h8v_A 87 GLSKVQAAEHTLRNINPDVLFEVHNYNITTVENF----QHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELG 162 (292)
T ss_dssp TSBHHHHHHHHHHHHCTTSEEEEECCCTTSHHHH----HHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH----HHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 8429999999999648984799961567817779----998643010000347888889989761334259999999819
Q ss_pred CCEEEECCCC--CCCCEEEEECCCCCCCCCCC
Q ss_conf 4389844368--65612798188545457788
Q 003715 337 KPLLESGTLG--AKCNTQMVIPHLTENYGASR 366 (800)
Q Consensus 337 ~Pli~~g~~G--~~G~v~~iip~~t~~y~~~~ 366 (800)
+|++++|+.| +.|++.+++|+.|+||.|..
T Consensus 163 ~Pli~~gv~~~~~~Gqv~~~~pg~t~Cy~Cl~ 194 (292)
T 3h8v_A 163 QTWMESGVSENAVSGHIQLIIPGESACFACAP 194 (292)
T ss_dssp CCEEEEEECTTSSEEEEEEECTTTSCCTTSSS
T ss_pred CCEEEEEEECCEEEEEEEEECCCCCCCHHHCC
T ss_conf 98899456445469999998789998776658
No 10
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=1.00 E-value=1 Score=271.40 Aligned_cols=170 Identities=31% Similarity=0.464 Sum_probs=157.2
Q ss_pred CCCCCCCCCCCCHHHHHH--CCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 956779844710145640--398999998709399983793389999999981146899853164179923556775455
Q 003715 184 DPRDLQPLNSRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQF 261 (800)
Q Consensus 184 ~~~~~~~~~~Rydrqi~l--~G~~~q~~L~~~~VlivG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQf 261 (800)
+++++ +||+||+++ ||.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|.|.|+.|||+||+
T Consensus 2 ~~~e~----~ry~Rq~~l~~~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gv-----g~i~lvD~d~v~~sNL~Rq~ 72 (251)
T 1zud_1 2 NDRDF----MRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGV-----GTLVLADDDDVHLSNLQRQI 72 (251)
T ss_dssp CHHHH----HHTHHHHTSTTTHHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTC-----SEEEEECCCBCCGGGTTTCT
T ss_pred CHHHH----HHHHHHCCHHHCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCC-----CEEEEEECCCCCCCCCCCCC
T ss_conf 87898----7755000501159999999855969999448899999999998589-----86999809996541578780
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCCCHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 65567557318999999999779997699864457964000231011048889999268989989985301235543898
Q 003715 262 LFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLE 341 (800)
Q Consensus 262 lf~~~diG~~Ka~va~~~l~~~np~i~i~~~~~~i~~~~~~~~~~~f~~~~diVi~alDn~~ar~~i~~~c~~~~~Pli~ 341 (800)
+|+.+|||++|+++++++++++||+++++.+..++..++. .++++++|+||+|+|+.++|..+++.|+..++|+|.
T Consensus 73 l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~----~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~ 148 (251)
T 1zud_1 73 LFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEAL----KDAVARADVVLDCTDNMATRQEINAACVALNTPLIT 148 (251)
T ss_dssp TCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHH----HHHHHHCSEEEECCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH----HHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 2784567888999999999987899779999522797779----999736999999789989999999999980998999
Q ss_pred ECCCCCCCCEEEEECCC-CCCCCCCC
Q ss_conf 44368656127981885-45457788
Q 003715 342 SGTLGAKCNTQMVIPHL-TENYGASR 366 (800)
Q Consensus 342 ~g~~G~~G~v~~iip~~-t~~y~~~~ 366 (800)
+++.|+.|++.++.|+. ++||.|..
T Consensus 149 ~~~~g~~G~v~~~~p~~~~~c~~cl~ 174 (251)
T 1zud_1 149 ASAVGFGGQLMVLTPPWEQGCYRCLW 174 (251)
T ss_dssp EEEEBTEEEEEEECTTCTTCCHHHHC
T ss_pred EECCCCCEEEEEECCCCCCCCEEEEC
T ss_conf 84333613799982699998577768
Done!