BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003716
(800 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 8/163 (4%)
Query: 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685
A++ +LRK R G E + G+S + GE FG++GPNGAGKTT + ++ + + +
Sbjct: 15 AVVVKDLRK----RIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS 68
Query: 686 SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 745
SG V G ++ + + + P+E + + G E+L F + + VE
Sbjct: 69 SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE 128
Query: 746 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ + L G + YS GM R+L +A +L+ NP++ +
Sbjct: 129 RATEIAGL--GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAI 169
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 77/142 (54%), Gaps = 3/142 (2%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706
AV+G+S + GE +LGP+G GKTT + M+ GI + TSG Y + + D+ Y
Sbjct: 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDV-LVNDIPPKYRE 76
Query: 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 766
+G+ Q L+ +T E++ F R + + + + V E + L + D++ +
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARK--LLIDNLLDRKPTQL 134
Query: 767 SGGMKRRLSVAISLIGNPKVRL 788
SGG ++R+++A +L+ PKV L
Sbjct: 135 SGGQQQRVALARALVKQPKVLL 156
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 85/157 (54%), Gaps = 8/157 (5%)
Query: 632 LRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 691
+ KIYPG +V G+S + GE G+LGP+G+GKTT + ++ G+ R T G ++
Sbjct: 20 VEKIYPG-----GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74
Query: 692 QGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV 751
G + TD+ ++G+ Q L++ +T +++ F R K + + V E L+ +
Sbjct: 75 GGKRV-TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFM 133
Query: 752 NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
L A++ + SGG ++R+++A +L P+V L
Sbjct: 134 RL--ESYANRFPHELSGGQQQRVALARALAPRPQVLL 168
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706
+++ LSL + SGE F +LGP GAGKT F+ ++ G SG + G D+ TD+
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV-TDLSPEKHD 73
Query: 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 766
+ Q L+ + +++L F R+K +K P LK +L D+
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL-----DRNPLTL 128
Query: 767 SGGMKRRLSVAISLIGNPKVRL 788
SGG ++R+++A +L+ NPK+ L
Sbjct: 129 SGGEQQRVALARALVTNPKILL 150
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 22/174 (12%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
+I N+R YP R PE + GLS ++ G+ ++GP+G GK+T ++++ T
Sbjct: 1077 VIFKNVRFAYPER---PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG 1133
Query: 687 GTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA-V 744
G ++ G +I+T + + + + + QE L++ + YG L ++T A V
Sbjct: 1134 GEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAEN--IIYG----LDPSSVTMAQV 1187
Query: 745 EESLKSVNL----------FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
EE+ + N+ F V D+ + SGG K+R+++A +L+ NPK+ L
Sbjct: 1188 EEAARLANIHNFIAELPEGFETRVGDR-GTQLSGGQKQRIAIARALVRNPKILL 1240
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 91/176 (51%), Gaps = 28/176 (15%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
I +N+ YP R P+ + G++L + +G+ ++G +G GK+T IS+++
Sbjct: 416 ITVENVHFTYPSR---PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK 472
Query: 687 GTAYVQGLDIR-TDMDRIYTSMGVCPQEDLLW------------ETLTGREHLLFYGRLK 733
G + G+D+R +++ + ++ V QE L+ E +T RE ++ ++
Sbjct: 473 GKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGIT-REEMVAACKMA 531
Query: 734 NLKGPALTQAVEESLKSV-NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
N E+ +K++ N ++ V D+ + SGG K+R+++A +L+ NPK+ L
Sbjct: 532 N---------AEKFIKTLPNGYNTLVGDR-GTQLSGGQKQRIAIARALVRNPKILL 577
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 26/174 (14%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
II N+ K++ + VA++ +++ + +GE FG+LGP+GAGKTTF+ ++ G+ ++
Sbjct: 4 IIVKNVSKVFK----KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 687 GTAYVQGLDIRTDMDRIYTSMG--VCPQED----------LLWETLTGREHLLFYGRLKN 734
G Y DR+ S G + P ED L+ LT E++ F
Sbjct: 60 GELYFD--------DRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK 111
Query: 735 LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ + + VEE K +++ H V + + SGG ++R+++A +L+ +P + L
Sbjct: 112 MSKEEIRKRVEEVAKILDIHH--VLNHFPRELSGGQQQRVALARALVKDPSLLL 163
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 8/168 (4%)
Query: 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 684
H I N+ K++ G A+N +SL +P+G+ +G++G +GAGK+T I + + R
Sbjct: 23 HMIKLSNITKVF--HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 80
Query: 685 TSGTAYVQGLDIRT----DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL 740
T G+ V G ++ T ++ + +G+ Q L + T ++ L N +
Sbjct: 81 TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 140
Query: 741 TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ V E L V L G D SGG K+R+++A +L NPKV L
Sbjct: 141 KRRVTELLSLVGL--GDKHDSYPSNLSGGQKQRVAIARALASNPKVLL 186
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 8/168 (4%)
Query: 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 684
H I N+ K++ G A+N +SL +P+G+ +G++G +GAGK+T I + + R
Sbjct: 23 HXIKLSNITKVF--HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 80
Query: 685 TSGTAYVQGLDIRT----DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL 740
T G+ V G ++ T ++ + +G Q L + T ++ L N +
Sbjct: 81 TEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 140
Query: 741 TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ V E L V L G D SGG K+R+++A +L NPKV L
Sbjct: 141 KRRVTELLSLVGL--GDKHDSYPSNLSGGQKQRVAIARALASNPKVLL 186
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 88/165 (53%), Gaps = 14/165 (8%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
N+ YP R E + GL+L + SG+ ++G +G GK+T + +M + G
Sbjct: 392 NIHFSYPSR---KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448
Query: 691 VQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES-- 747
+ G DIRT ++ + +GV QE +L+ T + YGR +++ + +AV+E+
Sbjct: 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAEN--IRYGR-EDVTMDEIEKAVKEANA 505
Query: 748 ----LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+K + F V ++ A + SGG K+R+++A +L+ NPK+ L
Sbjct: 506 YDFIMKLPHQFDTLVGERGA-QLSGGQKQRIAIARALVRNPKILL 549
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 82/161 (50%), Gaps = 14/161 (8%)
Query: 636 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695
YP R P + GLSL + G+ ++G +G GK+T + ++ +G+ ++ G +
Sbjct: 1040 YPTRPSIP---VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKE 1096
Query: 696 IRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF 754
I+ ++ + +G+ QE +L++ E++ + + + + +A +E+ +++ F
Sbjct: 1097 IKQLNVQWLRAQLGIVSQEPILFDCSIA-ENIAYGDNSRVVSYEEIVRAAKEA--NIHQF 1153
Query: 755 HGGVADK-------QAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ DK + + SGG K+R+++A +L+ P + L
Sbjct: 1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILL 1194
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 88/165 (53%), Gaps = 14/165 (8%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
N+ YP R E + GL+L + SG+ ++G +G GK+T + +M + G
Sbjct: 392 NIHFSYPSR---KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448
Query: 691 VQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES-- 747
+ G DIRT ++ + +GV QE +L+ T + YGR +++ + +AV+E+
Sbjct: 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAEN--IRYGR-EDVTMDEIEKAVKEANA 505
Query: 748 ----LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+K + F V ++ A + SGG K+R+++A +L+ NPK+ L
Sbjct: 506 YDFIMKLPHQFDTLVGERGA-QLSGGQKQRIAIARALVRNPKILL 549
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 82/161 (50%), Gaps = 14/161 (8%)
Query: 636 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695
YP R P + GLSL + G+ ++G +G GK+T + ++ +G+ ++ G +
Sbjct: 1040 YPTRPSIP---VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKE 1096
Query: 696 IRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF 754
I+ ++ + +G+ QE +L++ E++ + + + + +A +E+ +++ F
Sbjct: 1097 IKQLNVQWLRAQLGIVSQEPILFDCSIA-ENIAYGDNSRVVSYEEIVRAAKEA--NIHQF 1153
Query: 755 HGGVADK-------QAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ DK + + SGG K+R+++A +L+ P + L
Sbjct: 1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILL 1194
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 26/174 (14%)
Query: 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686
II N+ K++ + VA++ +++ + +GE FG+LGP+GAGKTTF+ ++ G+ ++
Sbjct: 4 IIVKNVSKVFK----KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 687 GTAYVQGLDIRTDMDRIYTSMG--VCPQED----------LLWETLTGREHLLFYGRLKN 734
G Y DR+ S G + P ED L+ LT E++ F
Sbjct: 60 GELYFD--------DRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK 111
Query: 735 LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+ + + VEE K +++ H V + + SG ++R+++A +L+ +P + L
Sbjct: 112 MSKEEIRKRVEEVAKILDIHH--VLNHFPRELSGAQQQRVALARALVKDPSLLL 163
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 8/162 (4%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
N+ K++ G A+N +SL +P+G+ +G++G +GAGK+T I + + R T G+
Sbjct: 6 NITKVF--HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL 63
Query: 691 VQGLDIRT----DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 746
V G ++ T ++ + +G+ Q L + T ++ L N + + V E
Sbjct: 64 VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTE 123
Query: 747 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
L V L G D SGG K+R+++A +L NPKV L
Sbjct: 124 LLSLVGL--GDKHDSYPSNLSGGQKQRVAIARALASNPKVLL 163
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 78/146 (53%), Gaps = 11/146 (7%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706
A+N ++L + GE +LGP+G+GK+T + + GI + TSG Y D+ T++ +
Sbjct: 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDV-TELPPKDRN 76
Query: 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 766
+G+ Q L+ +T +++ F L+ + + V E K +++ DK +Y
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHI------DKLLNRY 130
Query: 767 ----SGGMKRRLSVAISLIGNPKVRL 788
SGG ++R+++A +L+ P+V L
Sbjct: 131 PWQLSGGQQQRVAIARALVKEPEVLL 156
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
N+ YP R PE SL++PSG ++GP+G+GK+T +S+++ + SGT
Sbjct: 346 NVHFAYPAR---PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTIS 402
Query: 691 VQGLDIRTDMDRIY--TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 748
+ G DIR ++ ++ + +G QE +L+ + + E++ + + Q V E
Sbjct: 403 LDGHDIR-QLNPVWLRSKIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVA 460
Query: 749 KSVNLFH------GGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+V V ++ SGG K+R+++A +L+ NPK+ L
Sbjct: 461 NAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILL 506
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
N+ YP R PE SL++PSG ++GP+G+GK+T +S+++ + SGT
Sbjct: 377 NVHFAYPAR---PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTIS 433
Query: 691 VQGLDIRTDMDRIY--TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 748
+ G DIR ++ ++ + +G QE +L+ + + E++ + + Q V E
Sbjct: 434 LDGHDIR-QLNPVWLRSKIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVA 491
Query: 749 KSVNLFH------GGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+V V ++ SGG K+R+++A +L+ NPK+ L
Sbjct: 492 NAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILL 537
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 3/143 (2%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
E V ++L + GE +GP+G GK+T + M+ G+ TSG ++ G D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTPPA 73
Query: 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 763
+G+ Q L+ L+ E++ F +L K + Q V + + + L H + D++
Sbjct: 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH--LLDRKP 131
Query: 764 GKYSGGMKRRLSVAISLIGNPKV 786
SGG ++R+++ +L+ P V
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSV 154
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 3/143 (2%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
E V ++L + GE +GP+G GK+T + M+ G+ TSG ++ G D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTPPA 73
Query: 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 763
+G+ Q L+ L+ E++ F +L K + Q V + + + L H + D++
Sbjct: 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH--LLDRKP 131
Query: 764 GKYSGGMKRRLSVAISLIGNPKV 786
SGG ++R+++ +L+ P V
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSV 154
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 3/143 (2%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
E V ++L + GE +GP+G GK+T + M+ G+ TSG ++ G D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTPPA 73
Query: 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 763
+G+ Q L+ L+ E++ F +L K + Q V + + + L H + D++
Sbjct: 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH--LLDRKP 131
Query: 764 GKYSGGMKRRLSVAISLIGNPKV 786
SGG ++R+++ +L+ P V
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSV 154
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706
AVN L+L + GE +LGP+G GKTT + M+ G+ T G Y D+ T + +
Sbjct: 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV-TYLPPKDRN 84
Query: 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 766
+ + Q +W +T E++ F ++K + + V + + + + + ++ +
Sbjct: 85 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE--LLNRYPAQL 142
Query: 767 SGGMKRRLSVAISLIGNPKVRL 788
SGG ++R++VA +++ P V L
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLL 164
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706
AVN L+L + GE +LGP+G GKTT + M+ G+ T G Y D+ T + +
Sbjct: 27 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV-TYLPPKDRN 85
Query: 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 766
+ + Q +W +T E++ F ++K + + V + + + + + ++ +
Sbjct: 86 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE--LLNRYPAQL 143
Query: 767 SGGMKRRLSVAISLIGNPKVRL 788
SGG ++R++VA +++ P V L
Sbjct: 144 SGGQRQRVAVARAIVVEPDVLL 165
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 21/157 (13%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706
A++G+S+++ G+ ++GPNG+GK+T I+++ G + G Y + DI
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 707 MGVC-----PQ--------EDLL-WETLTGREHL--LFYGRLKNLKGPALTQAVEESLKS 750
G+ PQ E+LL E G L LFY + P + VE++ K
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI----PKEEEMVEKAFKI 137
Query: 751 VNLFH-GGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ + D++AG+ SGG + + + +L+ NPK+
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKM 174
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 21/157 (13%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706
A++G+S+++ G+ ++GPNG+GK+T I+++ G + G Y + DI
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 707 MGVC-----PQ--------EDLLWETLTGRE---HLLFYGRLKNLKGPALTQAVEESLKS 750
G+ PQ E+LL + E + LFY + P + VE++ K
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI----PKEEEMVEKAFKI 137
Query: 751 VNLFH-GGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ + D++AG+ SGG + + + +L+ NPK+
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKM 174
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 21/157 (13%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706
A++G+S+++ G+ ++GPNG+GK+T I+++ G + G Y + DI
Sbjct: 22 ALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 707 MGVC-----PQ--------EDLLWETLTGRE---HLLFYGRLKNLKGPALTQAVEESLKS 750
G+ PQ E+LL + E + LFY + P + VE++ K
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI----PKEEEMVEKAFKI 137
Query: 751 VNLFH-GGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ + D++AG+ SGG + + + +L+ NPK+
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKM 174
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 24/152 (15%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706
A+ G+ L +P G+ ++G NGAGKTT +S + G+ R G G DI +
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80
Query: 707 MGVC--PQEDLLWETLTGREHLLF--YGRLKNLKGP--------ALTQAVEESLKSVNLF 754
G+ P+ ++ LT E+L Y R K+ +G +L ++E LK +
Sbjct: 81 XGIALVPEGRRIFPELTVYENLXXGAYNR-KDKEGIKRDLEWIFSLFPRLKERLKQL--- 136
Query: 755 HGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
G SGG ++ L++ +L PK+
Sbjct: 137 --------GGTLSGGEQQXLAIGRALXSRPKL 160
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 70/126 (55%), Gaps = 5/126 (3%)
Query: 663 MLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTG 722
+LGP GAGK+ F+ ++ GI + G + G DI T + +G PQ+ L+ L+
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI-TPLPPERRGIGFVPQDYALFPHLSV 87
Query: 723 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782
++ YG L+N++ + V E + + + H + D++ + SGG ++R+++A +L+
Sbjct: 88 YRNIA-YG-LRNVERVERDRRVREMAEKLGIAH--LLDRKPARLSGGERQRVALARALVI 143
Query: 783 NPKVRL 788
P++ L
Sbjct: 144 QPRLLL 149
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 15/149 (10%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706
AV LSL + GE +LGP+G GKTT + + G+ T G Y++ ++ D ++
Sbjct: 21 AVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIED-NLVADPEK---G 76
Query: 707 MGVCPQED---------LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 757
+ V P+E L+ T +++ F +L+ + + + V E + + L
Sbjct: 77 VFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTE-- 134
Query: 758 VADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ +++ + SGG ++R+++ ++I PKV
Sbjct: 135 LLNRKPRELSGGQRQRVALGRAIIRRPKV 163
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 73/145 (50%), Gaps = 7/145 (4%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705
++G++ ++ G +LG G+GK+T ++++ + G V LD+RT + +
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417
Query: 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA----VEESLKSVNLFHGGVADK 761
+ PQE +L+ T +E+L +GR + A + + + S+ + ++
Sbjct: 418 HISAVPQETVLFSG-TIKENLK-WGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVER 475
Query: 762 QAGKYSGGMKRRLSVAISLIGNPKV 786
+SGG K+RLS+A +L+ PKV
Sbjct: 476 GGRNFSGGQKQRLSIARALVKKPKV 500
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 77/149 (51%), Gaps = 9/149 (6%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR- 702
E AV +SL + GE +LGP+G GKTT + M+ G+ + G Y+ G + D ++
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVADPEKG 73
Query: 703 IYT-----SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 757
I+ + + Q L+ +T +++ F +L+ + + Q V E + + L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-- 131
Query: 758 VADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ +++ + SGG ++R+++ +++ P+V
Sbjct: 132 LLNRKPRELSGGQRQRVALGRAIVRKPQV 160
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 73/150 (48%), Gaps = 7/150 (4%)
Query: 642 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR-TDM 700
+ +K + ++ + G+ ++GP G+GKTT +++++ G V G+DIR
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKR 424
Query: 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRL----KNLKGPALTQAVEESLKSVNLFHG 756
+ +S+G+ Q+ +L+ T T +E+L YG + +K A + +K + +
Sbjct: 425 SSLRSSIGIVLQDTILFST-TVKENLK-YGNPGATDEEIKEAAKLTHSDHFIKHLPEGYE 482
Query: 757 GVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
V S G ++ L++ + + NPK+
Sbjct: 483 TVLTDNGEDLSQGQRQLLAITRAFLANPKI 512
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 19/147 (12%)
Query: 651 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD-RIYTSMGV 709
++L++ GE +G +G GK+T I+++ TSG + G +I+ + + +G+
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 419
Query: 710 CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVA------DKQA 763
Q+++L+ T +E++L GR A + V E+ K N H + D +
Sbjct: 420 VQQDNILFSD-TVKENILL-GR-----PTATDEEVVEAAKMANA-HDFIMNLPQGYDTEV 471
Query: 764 G----KYSGGMKRRLSVAISLIGNPKV 786
G K SGG K+RLS+A + NP +
Sbjct: 472 GERGVKLSGGQKQRLSIARIFLNNPPI 498
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
Query: 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT----RTT 685
++LR +Y R+G + A +G+SL + ++G + +GK+T I M R
Sbjct: 8 EDLRAVYLVREGTIK--AADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRIL 65
Query: 686 SGTAYVQGLDIRT----DMDRI-YTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLK-- 736
SG +G D+ T ++ +I + + + PQ + L T+ EH ++
Sbjct: 66 SGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWS 125
Query: 737 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
L + E L+ V L V + + SGGMK+R+ +A++L+ +P V
Sbjct: 126 HSELIEKASEKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVV 175
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 641 GNP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD 699
G P EK A+ +SL + GEC + G G+GK+T + ++ G+ TSG G R
Sbjct: 17 GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE--RKK 74
Query: 700 MDRIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 757
I ++G+ Q ED + E + P V+++++ V L
Sbjct: 75 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDP--VPLVKKAMEFVGLDFDS 132
Query: 758 VADKQAGKYSGGMKRRLSVAISLIGNPKV 786
D+ SGG KRR+++A ++ P +
Sbjct: 133 FKDRVPFFLSGGEKRRVAIASVIVHEPDI 161
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 9/151 (5%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT- 705
A+ ++L + GE ++GP+G+GK+T ++++ + + T G Y+ + D T
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 706 ----SMGVCPQEDLLWETLTGREHL---LFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 758
+G Q+ L LT E++ L + + G + E LK L
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL-EERF 138
Query: 759 ADKQAGKYSGGMKRRLSVAISLIGNPKVRLS 789
A+ + + SGG ++R+++A +L NP + L+
Sbjct: 139 ANHKPNQLSGGQQQRVAIARALANNPPIILA 169
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 9/151 (5%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT- 705
A+ ++L + GE ++GP+G+GK+T ++++ + + T G Y+ + D T
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 706 ----SMGVCPQEDLLWETLTGREHL---LFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 758
+G Q+ L LT E++ L + + G + E LK L
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL-EERF 138
Query: 759 ADKQAGKYSGGMKRRLSVAISLIGNPKVRLS 789
A+ + + SGG ++R+++A +L NP + L+
Sbjct: 139 ANHKPNQLSGGQQQRVAIARALANNPPIILA 169
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Query: 651 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYTSMGV 709
+S + G+ ++GP+GAGK+T + ++ +SG + G DI + + + +GV
Sbjct: 73 VSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGV 132
Query: 710 CPQEDLLWETLTGREHLLFYGRL----KNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 765
PQ+ +L+ + YGR+ ++ A + +++ + + ++ K
Sbjct: 133 VPQDTVLFNDTIADN--IRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK 190
Query: 766 YSGGMKRRLSVAISLIGNPKVRL 788
SGG K+R+++A +++ P + L
Sbjct: 191 LSGGEKQRVAIARTILKAPGIIL 213
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 641 GNP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD 699
G P EK A+ +SL + GEC + G G+GK+T + ++ G+ TSG G R
Sbjct: 15 GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE--RKK 72
Query: 700 MDRIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 757
I ++G+ Q ED + E + P V+++++ V L
Sbjct: 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDP--VPLVKKAMEFVGLDFDS 130
Query: 758 VADKQAGKYSGGMKRRLSVAISLIGNPKV 786
D+ SGG KRR+++A ++ P +
Sbjct: 131 FKDRVPFFLSGGEKRRVAIASVIVHEPDI 159
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 27/165 (16%)
Query: 636 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695
YP R P+ + + GL+ L GE ++GPNG+GK+T +++ + + T G + G
Sbjct: 24 YPNR---PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKP 80
Query: 696 I----RTDMDRIYTSMGVCPQEDLLWETLTGR--EHLLFYGRLKNLKGPALTQAVEESLK 749
+ + R ++G PQ + GR + + YG + P + + ++K
Sbjct: 81 LPQYEHRYLHRQVAAVGQEPQ-------VFGRSLQENIAYGLTQK---PTMEEITAAAVK 130
Query: 750 S-VNLFHGGV-------ADKQAGKYSGGMKRRLSVAISLIGNPKV 786
S + F G+ D+ + SGG ++ +++A +LI P V
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCV 175
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 81/165 (49%), Gaps = 7/165 (4%)
Query: 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 684
H I N+R Y + +P V ++ ++L++ GE G++G +G+GK+T ++
Sbjct: 2 HDITFRNIRFRY--KPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 57
Query: 685 TSGTAYVQGLDIR-TDMDRIYTSMGVCPQED-LLWETLTGREHLLFYG-RLKNLKGPALT 741
+G + G D+ D + + +GV Q++ LL ++ L G ++ + A
Sbjct: 58 ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL 117
Query: 742 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ + + + + +Q SGG ++R+++A +L+ NPK+
Sbjct: 118 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 162
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
N+ K Y + G A+ ++L + GE + GP+G+GK+T ++++ + + T G Y
Sbjct: 6 NVTKTY--KXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVY 63
Query: 691 VQGLDIRTDMDRIYT-----SMGVCPQEDLLWETLTGREHL---LFYGRLKNLKGPALTQ 742
+ + D T +G Q+ L LT E++ L + G +
Sbjct: 64 IDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRK 123
Query: 743 AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLS 789
E LK L A+ + + SGG ++R+++A +L NP + L+
Sbjct: 124 RALECLKXAEL-EERFANHKPNQLSGGQQQRVAIARALANNPPIILA 169
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR-TDMDRIY 704
V ++ ++L++ GE G++G +G+GK+T ++ +G + G D+ D + +
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82
Query: 705 TSMGVCPQED-LLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 762
+GV Q++ LL ++ L G ++ + A + + + + + +Q
Sbjct: 83 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142
Query: 763 AGKYSGGMKRRLSVAISLIGNPKV 786
SGG ++R+++A +L+ NPK+
Sbjct: 143 GAGLSGGQRQRIAIARALVNNPKI 166
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR-TDMDRIY 704
V ++ ++L++ GE G++G +G+GK+T ++ +G + G D+ D + +
Sbjct: 17 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 76
Query: 705 TSMGVCPQED-LLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 762
+GV Q++ LL ++ L G ++ + A + + + + + +Q
Sbjct: 77 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 136
Query: 763 AGKYSGGMKRRLSVAISLIGNPKV 786
SGG ++R+++A +L+ NPK+
Sbjct: 137 GAGLSGGQRQRIAIARALVNNPKI 160
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR-TDMDRIY 704
V ++ ++L++ GE G++G +G+GK+T ++ +G + G D+ D + +
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82
Query: 705 TSMGVCPQED-LLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 762
+GV Q++ LL ++ L G ++ + A + + + + + +Q
Sbjct: 83 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142
Query: 763 AGKYSGGMKRRLSVAISLIGNPKV 786
SGG ++R+++A +L+ NPK+
Sbjct: 143 GAGLSGGQRQRIAIARALVNNPKI 166
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 12/147 (8%)
Query: 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI---RTDMDRI 703
A+ G+++ + GE +LG NG GK+T GI + +SG I R + ++
Sbjct: 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKL 82
Query: 704 YTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGP--ALTQAVEESLKSVNLFHGGVA 759
S+G+ Q ++ L+ ++ + +G + N+K P + + V+ +LK + H +
Sbjct: 83 RESIGIVFQDPDNQLFSASVYQD--VSFGAV-NMKLPEDEIRKRVDNALKRTGIEH--LK 137
Query: 760 DKQAGKYSGGMKRRLSVAISLIGNPKV 786
DK S G K+R+++A L+ PKV
Sbjct: 138 DKPTHCLSFGQKKRVAIAGVLVMEPKV 164
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR-TDMDRIY 704
V ++ ++L++ GE G++G +G+GK+T ++ +G + G D+ D + +
Sbjct: 17 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 76
Query: 705 TSMGVCPQED-LLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 762
+GV Q++ LL ++ L G ++ + A + + + + + +Q
Sbjct: 77 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 136
Query: 763 AGKYSGGMKRRLSVAISLIGNPKV 786
SGG ++R+++A +L+ NPK+
Sbjct: 137 GAGLSGGQRQRIAIARALVNNPKI 160
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR-TDMDRIY 704
V ++ ++L++ GE G++G +G+GK+T ++ +G + G D+ D + +
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82
Query: 705 TSMGVCPQED-LLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 762
+GV Q++ LL ++ L G ++ + A + + + + + +Q
Sbjct: 83 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142
Query: 763 AGKYSGGMKRRLSVAISLIGNPKV 786
SGG ++R+++A +L+ NPK+
Sbjct: 143 GAGLSGGQRQRIAIARALVNNPKI 166
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 80/165 (48%), Gaps = 7/165 (4%)
Query: 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 684
H I N+R Y + +P V ++ ++L++ GE G++G G+GK+T ++
Sbjct: 2 HDITFRNIRFRY--KPDSP--VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIP 57
Query: 685 TSGTAYVQGLDIR-TDMDRIYTSMGVCPQED-LLWETLTGREHLLFYG-RLKNLKGPALT 741
+G + G D+ D + + +GV Q++ LL ++ L G ++ + A
Sbjct: 58 ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL 117
Query: 742 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786
+ + + + + +Q SGG ++R+++A +L+ NPK+
Sbjct: 118 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 162
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 10/152 (6%)
Query: 642 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-IRTDM 700
+P + GL+ L G+ ++GPNG+GK+T +++ + + T G + G ++ D
Sbjct: 29 HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDH 88
Query: 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS--VNLFHGGV 758
++T + QE LL+ + RE++ YG + +T ES ++ F G
Sbjct: 89 HYLHTQVAAVGQEPLLFGR-SFRENIA-YGLTRTPTMEEITAVAMESGAHDFISGFPQGY 146
Query: 759 ADKQAG----KYSGGMKRRLSVAISLIGNPKV 786
D + G + SGG ++ +++A +LI P++
Sbjct: 147 -DTEVGETGNQLSGGQRQAVALARALIRKPRL 177
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 34/55 (61%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 698
++ +N +SL + SGE ++GPNGAGK+T + ++ G + G ++ G ++ +
Sbjct: 23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNS 77
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 10/152 (6%)
Query: 642 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-IRTDM 700
+P + GL+ L G+ ++GPNG+GK+T +++ + + T G + G ++ D
Sbjct: 29 HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDH 88
Query: 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS--VNLFHGGV 758
++T + QE LL+ + RE++ YG + +T ES ++ F G
Sbjct: 89 HYLHTQVAAVGQEPLLFGR-SFRENIA-YGLTRTPTMEEITAVAMESGAHDFISGFPQGY 146
Query: 759 ADKQAG----KYSGGMKRRLSVAISLIGNPKV 786
D + G + SGG ++ +++A +LI P++
Sbjct: 147 -DTEVGETGNQLSGGQRQAVALARALIRKPRL 177
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 74/143 (51%), Gaps = 20/143 (13%)
Query: 655 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYTSMGVCPQE 713
+PSG ++G G+GK+T I+ ++ G + G ++ + + + I + +G+ PQ+
Sbjct: 43 IPSGTTCALVGHTGSGKST-IAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQD 101
Query: 714 DLLW-ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQA 763
+L+ ET+ ++ + YG+L A + V ++ KS L+ + +
Sbjct: 102 TILFNETI---KYNILYGKL-----DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKG 153
Query: 764 GKYSGGMKRRLSVAISLIGNPKV 786
K SGG ++R+++A L+ +PK+
Sbjct: 154 MKLSGGERQRIAIARCLLKDPKI 176
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSG 687
GE G++GPNG GKTTF+ M+ G+ T G
Sbjct: 367 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 397
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 655 LPSGECFGMLGPNGAGKTTFISMMIG 680
+ G G++GPNG GKTT + ++ G
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAG 125
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSG 687
GE G++GPNG GKTTF+ M+ G+ T G
Sbjct: 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 411
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 655 LPSGECFGMLGPNGAGKTTFISMMIG 680
+ G G++GPNG GKTT + ++ G
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAG 139
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 26/153 (16%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
E L+ L G+ +LG NG GK+T + +++GI R G +
Sbjct: 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI------------EV 64
Query: 704 YTSMGVCPQ-------EDLLWETLTGRE-HLLFYGRLKNLKGPALTQAVEESLKSVNLFH 755
Y S+G PQ +L L GR H+ + + K+ Q ++L +NL H
Sbjct: 65 YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD----YQVAMQALDYLNLTH 120
Query: 756 GGVADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
+A ++ SGG ++ + +A ++ K+ L
Sbjct: 121 --LAKREFTSLSGGQRQLILIARAIASECKLIL 151
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR------ 697
E+ ++ ++L + +GE +LGPNG+GKTT + + G+ SG ++ G+++R
Sbjct: 17 ERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYI 74
Query: 698 ---TDMDRIYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLK 736
T++ Y +GV + + L+E L G + LF LK LK
Sbjct: 75 RYSTNLPEAY-EIGVTVNDIVYLYEELKGLDRDLFLEMLKALK 116
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 642 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-IRTDM 700
+P + GL+ L G+ ++GPNG+GK+T +++ + + T G + G ++ D
Sbjct: 29 HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDH 88
Query: 701 DRIYTSMGVCPQEDLLW 717
++T + QE LL+
Sbjct: 89 HYLHTQVAAVGQEPLLF 105
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 655 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSG 687
+ GE G++GPNG GKTTF+ + G+ T G
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEG 341
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 77/147 (52%), Gaps = 10/147 (6%)
Query: 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR---TDMDRIY 704
+ G+++ + GE ++GP+G+GK+TF+ + + G + G++++ T+++++
Sbjct: 19 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 78
Query: 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG 764
+G+ Q L+ +T ++ +K K P +A ++++ ++ G+ DK
Sbjct: 79 EEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPR-EKAEAKAMELLDKV--GLKDKAHA 134
Query: 765 ---KYSGGMKRRLSVAISLIGNPKVRL 788
SGG +R+++A +L PK+ L
Sbjct: 135 YPDSLSGGQAQRVAIARALAMEPKIML 161
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 77/147 (52%), Gaps = 10/147 (6%)
Query: 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR---TDMDRIY 704
+ G+++ + GE ++GP+G+GK+TF+ + + G + G++++ T+++++
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 99
Query: 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG 764
+G+ Q L+ +T ++ +K K P +A ++++ ++ G+ DK
Sbjct: 100 EEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPR-EKAEAKAMELLDKV--GLKDKAHA 155
Query: 765 ---KYSGGMKRRLSVAISLIGNPKVRL 788
SGG +R+++A +L PK+ L
Sbjct: 156 YPDSLSGGQAQRVAIARALAMEPKIML 182
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDI 696
+K + GLSL + GE ++GPNG+GK+T + + G T GT +G D+
Sbjct: 13 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 67
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDI 696
+K + GLSL + GE ++GPNG+GK+T + + G T GT +G D+
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 632 LRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 680
+R ++ DG + + G++L +P GE ++GPNGAGK+T ++ G
Sbjct: 6 IRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 28/165 (16%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
N+ YPGRD P A+ ++L +P+G+ ++G +G+GK+T S++ G
Sbjct: 346 NVTFTYPGRD-VP---ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEIL 401
Query: 691 VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL--------LFYGRLKNLKGPALTQ 742
+ G D+R YT + Q L+ + + HL + Y R + + +
Sbjct: 402 MDGHDLRE-----YTLASLRNQVALVSQNV----HLFNDTVANNIAYARTEQYSREQIEE 452
Query: 743 AVEE--SLKSVNLFHGGVADKQAGK----YSGGMKRRLSVAISLI 781
A ++ +N G+ D G+ SGG ++R+++A +L+
Sbjct: 453 AARMAYAMDFINKMDNGL-DTVIGENGVLLSGGQRQRIAIARALL 496
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-QGLD----IRT 698
E + LS + +GE ++GPNGAGK+T ++ M G+T + Q L+ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKL 71
Query: 699 DMDRIYTSMGVCPQ-EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL-KSVNLFHG 756
+ R Y S P +W LT +H L N AL A+++ L +S N G
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL--ALDDKLGRSTNQLSG 129
Query: 757 G 757
G
Sbjct: 130 G 130
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-QGLD----IRT 698
E + LS + +GE ++GPNGAGK+T ++ M G+T + Q L+ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKL 71
Query: 699 DMDRIYTSMGVCPQ-EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL-KSVNLFHG 756
+ R Y S P +W LT +H L N AL A+++ L +S N G
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL--ALDDKLGRSTNQLSG 129
Query: 757 G 757
G
Sbjct: 130 G 130
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 39/164 (23%), Positives = 79/164 (48%), Gaps = 19/164 (11%)
Query: 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT 688
++N++K+ G + + G+SL++ GE ++G +G+GK+T + ++ + T G
Sbjct: 7 AENIKKVIRGYE------ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGK 60
Query: 689 AYVQGLDIRTDMDRIYT-----SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA 743
+++G ++ ++ + +G Q L LT E+++ LK K +
Sbjct: 61 VFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIV-PMLKMGKPKKEAKE 119
Query: 744 VEESLKSVNLFHGGVADKQAGK---YSGGMKRRLSVAISLIGNP 784
E L L G+ DK + K SGG ++R+++A +L P
Sbjct: 120 RGEYL----LSELGLGDKLSRKPYELSGGEQQRVAIARALANEP 159
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
N+ YPGR E A+ ++L +P+G+ ++G +G+GK+T S++ G
Sbjct: 346 NVTFTYPGR----EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
Query: 691 VQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE--S 747
+ G D+R + + + + Q L+ + Y R + + +A +
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN--IAYARTEEYSREQIEEAARMAYA 459
Query: 748 LKSVNLFHGGVADKQAGK----YSGGMKRRLSVAISLI 781
+ +N G+ D G+ SGG ++R+++A +L+
Sbjct: 460 MDFINKMDNGL-DTIIGENGVLLSGGQRQRIAIARALL 496
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689
GE G+LGPNG GKTTF +++G G+
Sbjct: 293 EGEIIGILGPNGIGKTTFARILVGEITADEGSV 325
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 37.7 bits (86), Expect = 0.025, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 9/143 (6%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703
+K + +++ + G GPNG GKTT + + + G G+ I +I
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 80
Query: 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 763
+ P+E ++ ++ ++L L +K + ++L+SV + K+
Sbjct: 81 F----FLPEEIIVPRKISVEDYLKAVASLYGVK--VNKNEIMDALESVEVLD---LKKKL 131
Query: 764 GKYSGGMKRRLSVAISLIGNPKV 786
G+ S G RR+ +A +L+ N ++
Sbjct: 132 GELSQGTIRRVQLASTLLVNAEI 154
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSM 707
+NG++ ++P G ++G G GK++ +S ++ G ++G S+
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------------SV 68
Query: 708 GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE-----ESLKSVNLFHGGVADKQ 762
PQ+ + + + RE++LF +L+ ++ QA E L S + G ++
Sbjct: 69 AYVPQQAWI-QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIG---EK 124
Query: 763 AGKYSGGMKRRLSVAISLIGNPKVRL 788
SGG K+R+S+A ++ N + L
Sbjct: 125 GVNLSGGQKQRVSLARAVYSNADIYL 150
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 636 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695
Y G+ EK A++ +S ++P G+ ++G +G+GK+T ++ SG+ + G D
Sbjct: 351 YQGK----EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406
Query: 696 IR 697
+R
Sbjct: 407 VR 408
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI---RTDMDRIY 704
+N +SL+L GE ++G +G GKTT + + G + SG + G I T++
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 705 TSMGVCPQEDLLWETLT 721
+G QE +L+ LT
Sbjct: 80 RRLGYLVQEGVLFPHLT 96
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-QGLD----IRT 698
E + LS + +GE ++GPNGAGK+T ++ G T + Q L+ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKL 71
Query: 699 DMDRIYTSMGVCPQ-EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL-KSVNLFHG 756
+ R Y S P +W LT +H L N AL A+++ L +S N G
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL--ALDDKLGRSTNQLSG 129
Query: 757 G 757
G
Sbjct: 130 G 130
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 661 FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ-----GLDIRTDMDRIYTSMGVCPQEDL 715
++GPNGAGK+T I+++ G TSG Y + I + + P E +
Sbjct: 696 IAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYI 755
Query: 716 LWETLTGRE 724
W TG +
Sbjct: 756 QWRFQTGED 764
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 32/150 (21%)
Query: 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG------ITRTTSGTAYVQGLDIRT 698
K+ +N L L +G+ GPNG GK+T + T+ T YV+
Sbjct: 442 KILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYVEH----- 496
Query: 699 DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 758
D+D ++ V D ++E+ G +A+++ L +
Sbjct: 497 DIDGTHSDTSVL---DFVFES-----------------GVGTKEAIKDKLIEFGFTDEXI 536
Query: 759 ADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
A + SGG K +L++A +++ N + L
Sbjct: 537 AXPISA-LSGGWKXKLALARAVLRNADILL 565
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-QGLD----IRT 698
E + LS + +GE ++GPNGAGK+T ++ G T + Q L+ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKL 71
Query: 699 DMDRIYTSMGVCPQ-EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL-KSVNLFHG 756
+ R Y S P +W LT +H L N AL A+++ L +S N G
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL--ALDDKLGRSTNQLSG 129
Query: 757 G 757
G
Sbjct: 130 G 130
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 661 FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ-----GLDIRTDMDRIYTSMGVCPQEDL 715
++GPNGAGK+T I+++ G TSG Y + I + + P E +
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYI 761
Query: 716 LWETLTGRE 724
W TG +
Sbjct: 762 QWRFQTGED 770
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 32/150 (21%)
Query: 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG------ITRTTSGTAYVQGLDIRT 698
K+ +N L L +G+ GPNG GK+T + T+ T YV+
Sbjct: 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYVEH----- 502
Query: 699 DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 758
D+D ++ V D ++E+ G +A+++ L +
Sbjct: 503 DIDGTHSDTSVL---DFVFES-----------------GVGTKEAIKDKLIEFGFTDEXI 542
Query: 759 ADKQAGKYSGGMKRRLSVAISLIGNPKVRL 788
A + SGG K +L++A +++ N + L
Sbjct: 543 AXPISA-LSGGWKXKLALARAVLRNADILL 571
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
N+ YPG P+ +N +L S ++GPNGAGK+T I+++ G TSG Y
Sbjct: 676 NMEFQYPGT-SKPQITDIN-FQCSLSSR--IAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Query: 691 VQ-----GLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724
+ I + + P E + W TG +
Sbjct: 732 THENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGED 770
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 40/154 (25%)
Query: 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG------ITRTTSGTAYVQGLDIRT 698
K+ +N L L +G+ GPNG GK+T + + T+ T YV+
Sbjct: 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEH----- 502
Query: 699 DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 758
D+D ++ V D ++E+ G +E++K L G
Sbjct: 503 DIDGTHSDTSVL---DFVFESGVG---------------------TKEAIKD-KLIEFGF 537
Query: 759 ADKQAG----KYSGGMKRRLSVAISLIGNPKVRL 788
D+ SGG K +L++A +++ N + L
Sbjct: 538 TDEMIAMPISALSGGWKMKLALARAVLRNADILL 571
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
Query: 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG-----LDIRTDMDRIYTSMGVCP 711
+G+ + ++G NG+GKTT + ++ G+ +G ++ G +R ++ ++ + P
Sbjct: 36 TGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEIFLDGSPADPFLLRKNVGYVFQN----P 90
Query: 712 QEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771
++ T+ E + F + L + + +++ L+ V L G+A SGG K
Sbjct: 91 SSQIIGATV--EEDVAFSLEIMGLDESEMRKRIKKVLELVGL--SGLAAADPLNLSGGQK 146
Query: 772 RRLSVA 777
+RL++A
Sbjct: 147 QRLAIA 152
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 20/123 (16%)
Query: 659 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWE 718
E M+G NG GKTT I ++ G + G D+ ++ SM PQ+ +
Sbjct: 379 EILVMMGENGTGKTTLIKLLAGALKPDEG----------QDIPKLNVSMK--PQK--IAP 424
Query: 719 TLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777
G LF+ +++ P V + L+ ++ D++ SGG +R+++
Sbjct: 425 KFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDII-----DQEVQHLSGGELQRVAIV 479
Query: 778 ISL 780
++L
Sbjct: 480 LAL 482
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 665 GPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYTSMGVCPQEDLLWETLTGR 723
GP+G GK+T S++ + T+G + G I ++ + +G Q+ + T R
Sbjct: 35 GPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIR 93
Query: 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK-------QAGKYSGGMKRRLSV 776
E+L YG + L Q ++ L F + D+ + K SGG ++RL++
Sbjct: 94 ENLT-YGLEGDYTDEDLWQVLD--LAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAI 150
Query: 777 AISLIGNPKV 786
A + + NPK+
Sbjct: 151 ARAFLRNPKI 160
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 20/177 (11%)
Query: 621 PGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 680
P SH +I L +I + G K + +S + G+ + + G NGAGKTT ++++
Sbjct: 15 PRGSHXLI--QLDQIGRXKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNA 69
Query: 681 ITRTTSGTAYVQGL---DIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG 737
TSGT + G + + + +G L E E ++ K
Sbjct: 70 YEPATSGTVNLFGKXPGKVGYSAETVRQHIGFVSHS--LLEKFQEGERVIDVVISGAFKS 127
Query: 738 PALTQAVEESLKSVNLFH------GGVADKQA--GKYSGGMKRRLSVAISLIGNPKV 786
+ Q +++ ++ N H G A Q G S G K+R+ +A +L G P+V
Sbjct: 128 IGVYQDIDDEIR--NEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQV 182
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 32.7 bits (73), Expect = 0.85, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 28/176 (15%)
Query: 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690
+L K Y G + + G+SL +G+ ++G +G+GK+TF+ + + + + G
Sbjct: 11 DLHKRYGGHE------VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 64
Query: 691 VQGLDIRTDMDR--------------IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK 736
V G +I D+ + T + + Q LW +T E+++ ++ L
Sbjct: 65 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM-EAPIQVL- 122
Query: 737 GPALTQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVRL 788
G + A E +LK L G+ ++ GKY SGG ++R+S+A +L P V L
Sbjct: 123 GLSKHDARERALKY--LAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL 176
>pdb|3AQM|A Chain A, Structure Of Bacterial Protein (Form Ii)
pdb|3AQM|B Chain B, Structure Of Bacterial Protein (Form Ii)
Length = 415
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVR 787
++N + VAD Y GGMK I LIGNP+ R
Sbjct: 137 TINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETR 174
>pdb|3AQL|A Chain A, Structure Of Bacterial Protein (Apo Form Ii)
pdb|3AQL|B Chain B, Structure Of Bacterial Protein (Apo Form Ii)
pdb|3AQN|A Chain A, Complex Structure Of Bacterial Protein (Apo Form Ii)
pdb|3AQN|B Chain B, Complex Structure Of Bacterial Protein (Apo Form Ii)
Length = 415
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVR 787
++N + VAD Y GGMK I LIGNP+ R
Sbjct: 137 TINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETR 174
>pdb|3AQK|A Chain A, Structure Of Bacterial Protein (Apo Form I)
Length = 414
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVR 787
++N + VAD Y GGMK I LIGNP+ R
Sbjct: 136 TINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETR 173
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTS 706
+ +S ++ G+ G+LG G+GK+T +S + + T G + G+ + +++ +
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-NTEGEIQIDGVSWDSITLEQWRKA 95
Query: 707 MGVCPQE 713
GV PQ+
Sbjct: 96 FGVIPQK 102
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 641 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG 687
GNP + ++L + GE + G G+GKT+ + +++G + G
Sbjct: 50 GNP---VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 641 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG 687
GNP + ++L + GE + G G+GKT+ + +++G + G
Sbjct: 50 GNP---VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 641 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG 687
GNP + ++L + GE + G G+GKT+ + +++G + G
Sbjct: 50 GNP---VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 641 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG 687
GNP + ++L + GE + G G+GKT+ + +++G + G
Sbjct: 50 GNP---VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 641 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG 687
GNP + ++L + GE + G G+GKT+ + +++G + G
Sbjct: 50 GNP---VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,779,209
Number of Sequences: 62578
Number of extensions: 952367
Number of successful extensions: 2164
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2020
Number of HSP's gapped (non-prelim): 107
length of query: 800
length of database: 14,973,337
effective HSP length: 107
effective length of query: 693
effective length of database: 8,277,491
effective search space: 5736301263
effective search space used: 5736301263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)