Query 003716
Match_columns 800
No_of_seqs 557 out of 2643
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:39:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0059 Lipid exporter ABCA1 a 100.0 7.5E-69 1.6E-73 652.6 26.0 646 80-799 45-740 (885)
2 TIGR01257 rim_protein retinal- 100.0 3.1E-65 6.6E-70 646.6 53.6 469 281-799 1612-2112(2272)
3 TIGR01257 rim_protein retinal- 100.0 5E-65 1.1E-69 644.6 53.8 515 266-799 545-1103(2272)
4 COG1125 OpuBA ABC-type proline 100.0 8.6E-38 1.9E-42 320.7 14.4 159 626-790 1-160 (309)
5 COG1126 GlnQ ABC-type polar am 100.0 3.9E-37 8.5E-42 310.3 17.3 157 626-790 2-161 (240)
6 COG4555 NatA ABC-type Na+ tran 100.0 1.3E-37 2.7E-42 310.0 10.1 158 626-790 1-158 (245)
7 COG1135 AbcC ABC-type metal io 100.0 9.9E-37 2.1E-41 321.1 17.0 162 626-790 1-166 (339)
8 COG3839 MalK ABC-type sugar tr 100.0 2E-36 4.4E-41 328.4 17.8 157 625-790 2-158 (338)
9 COG1131 CcmA ABC-type multidru 100.0 5E-36 1.1E-40 323.7 19.2 159 625-790 3-161 (293)
10 COG3842 PotA ABC-type spermidi 100.0 4.2E-36 9E-41 327.6 15.6 157 625-790 4-161 (352)
11 COG1116 TauB ABC-type nitrate/ 100.0 1E-35 2.2E-40 307.6 17.0 154 625-790 2-155 (248)
12 PRK13537 nodulation ABC transp 100.0 3.3E-35 7.1E-40 319.3 18.4 167 624-798 5-179 (306)
13 COG1137 YhbG ABC-type (unclass 100.0 4.6E-36 1E-40 298.5 7.8 158 625-790 3-164 (243)
14 COG2884 FtsE Predicted ATPase 100.0 4.8E-35 1E-39 289.4 13.0 158 626-790 1-162 (223)
15 COG1136 SalX ABC-type antimicr 100.0 3.3E-34 7.1E-39 295.5 19.1 161 627-790 2-167 (226)
16 PRK13536 nodulation factor exp 100.0 7.5E-34 1.6E-38 312.7 18.3 159 624-790 39-197 (340)
17 COG1127 Ttg2A ABC-type transpo 100.0 6.6E-34 1.4E-38 290.9 16.1 160 624-790 6-170 (263)
18 TIGR03522 GldA_ABC_ATP gliding 100.0 1.2E-33 2.7E-38 306.2 18.5 157 626-790 2-158 (301)
19 COG4152 ABC-type uncharacteriz 100.0 5.7E-34 1.2E-38 291.0 13.3 154 626-790 2-155 (300)
20 TIGR02314 ABC_MetN D-methionin 100.0 7E-33 1.5E-37 305.0 20.5 161 626-790 1-165 (343)
21 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.7E-33 1E-37 290.9 16.9 155 625-790 3-164 (254)
22 COG1120 FepC ABC-type cobalami 100.0 3.5E-33 7.6E-38 293.1 15.9 157 626-790 2-163 (258)
23 PRK11432 fbpC ferric transport 100.0 9.5E-33 2.1E-37 305.1 20.1 157 625-790 5-161 (351)
24 COG3638 ABC-type phosphate/pho 100.0 4.8E-33 1E-37 283.9 16.2 159 625-790 2-172 (258)
25 TIGR03265 PhnT2 putative 2-ami 100.0 1.2E-32 2.7E-37 304.4 20.3 157 625-790 3-159 (353)
26 cd03266 ABC_NatA_sodium_export 100.0 1.2E-32 2.6E-37 283.9 18.8 161 626-790 1-161 (218)
27 TIGR01288 nodI ATP-binding ABC 100.0 1.4E-32 3E-37 298.3 20.1 158 625-790 3-160 (303)
28 TIGR00960 3a0501s02 Type II (G 100.0 1.4E-32 3.1E-37 283.1 19.1 159 626-790 1-163 (216)
29 COG1118 CysA ABC-type sulfate/ 100.0 2.6E-33 5.6E-38 294.7 13.3 156 626-790 2-162 (345)
30 cd03265 ABC_DrrA DrrA is the A 100.0 1.5E-32 3.2E-37 284.0 18.8 156 627-790 1-156 (220)
31 PRK11650 ugpC glycerol-3-phosp 100.0 1.4E-32 3E-37 304.4 19.7 157 626-790 3-159 (356)
32 TIGR01188 drrA daunorubicin re 100.0 6E-33 1.3E-37 300.9 15.2 144 645-790 6-149 (302)
33 TIGR00956 3a01205 Pleiotropic 100.0 1.8E-30 3.9E-35 329.2 39.3 159 625-790 758-927 (1394)
34 cd03261 ABC_Org_Solvent_Resist 100.0 3.8E-32 8.2E-37 283.7 19.3 156 627-790 1-161 (235)
35 COG0411 LivG ABC-type branched 100.0 8.9E-33 1.9E-37 283.8 13.6 158 625-790 3-174 (250)
36 TIGR03258 PhnT 2-aminoethylpho 100.0 4.3E-32 9.3E-37 300.9 19.7 156 626-790 5-162 (362)
37 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 4.4E-32 9.5E-37 279.7 18.2 160 627-790 1-165 (218)
38 cd03259 ABC_Carb_Solutes_like 100.0 4.8E-32 1E-36 278.6 17.8 155 627-790 1-155 (213)
39 PRK11607 potG putrescine trans 100.0 6.8E-32 1.5E-36 300.8 20.3 158 624-790 17-174 (377)
40 cd03263 ABC_subfamily_A The AB 100.0 6.3E-32 1.4E-36 278.9 18.4 158 627-790 1-158 (220)
41 TIGR02673 FtsE cell division A 100.0 8.4E-32 1.8E-36 276.8 18.9 158 626-790 1-162 (214)
42 PRK09452 potA putrescine/sperm 100.0 7.1E-32 1.5E-36 300.3 19.7 158 624-790 12-169 (375)
43 PRK11629 lolD lipoprotein tran 100.0 1.5E-31 3.3E-36 279.0 20.7 162 625-790 4-170 (233)
44 COG0410 LivF ABC-type branched 100.0 4.2E-32 9E-37 277.0 15.7 158 625-790 2-161 (237)
45 PRK10851 sulfate/thiosulfate t 100.0 1.1E-31 2.3E-36 297.0 19.6 156 626-790 2-161 (353)
46 cd03269 ABC_putative_ATPase Th 100.0 1E-31 2.2E-36 275.7 17.9 153 627-790 1-153 (210)
47 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.3E-31 2.8E-36 277.0 18.4 156 627-790 1-156 (220)
48 cd03292 ABC_FtsE_transporter F 100.0 1.5E-31 3.3E-36 274.7 18.7 157 627-790 1-161 (214)
49 PRK11000 maltose/maltodextrin 100.0 1.4E-31 3E-36 297.9 19.8 156 626-790 3-158 (369)
50 PRK11153 metN DL-methionine tr 100.0 1.6E-31 3.5E-36 294.7 19.9 161 626-790 1-165 (343)
51 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2E-31 4.3E-36 278.6 19.5 157 626-790 1-157 (236)
52 cd03301 ABC_MalK_N The N-termi 100.0 1.4E-31 3E-36 275.0 17.7 155 627-790 1-155 (213)
53 COG1117 PstB ABC-type phosphat 100.0 8E-32 1.7E-36 270.9 15.3 160 624-790 5-174 (253)
54 cd03264 ABC_drug_resistance_li 100.0 1.6E-31 3.4E-36 274.4 17.7 155 627-790 1-155 (211)
55 cd03258 ABC_MetN_methionine_tr 100.0 2.1E-31 4.6E-36 277.5 18.9 161 626-790 1-165 (233)
56 PRK10908 cell division protein 100.0 2.9E-31 6.2E-36 274.8 19.4 158 626-790 1-162 (222)
57 cd03218 ABC_YhbG The ABC trans 100.0 2.2E-31 4.8E-36 277.0 18.5 156 627-790 1-158 (232)
58 TIGR02211 LolD_lipo_ex lipopro 100.0 3.4E-31 7.4E-36 273.6 19.4 160 627-790 2-166 (221)
59 PRK13538 cytochrome c biogenes 100.0 3E-31 6.6E-36 271.4 18.8 154 626-790 1-154 (204)
60 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4E-31 8.7E-36 277.3 19.2 159 627-790 1-160 (242)
61 cd03225 ABC_cobalt_CbiO_domain 100.0 3.1E-31 6.7E-36 272.1 17.8 156 629-790 2-159 (211)
62 cd03296 ABC_CysA_sulfate_impor 100.0 3.7E-31 8E-36 277.1 18.5 156 626-790 2-161 (239)
63 cd03262 ABC_HisP_GlnQ_permease 100.0 4.2E-31 9.1E-36 271.3 18.5 156 627-790 1-160 (213)
64 cd03268 ABC_BcrA_bacitracin_re 100.0 2.9E-31 6.2E-36 271.9 17.1 151 627-790 1-151 (208)
65 TIGR03608 L_ocin_972_ABC putat 100.0 3.4E-31 7.3E-36 270.6 17.3 154 629-790 1-159 (206)
66 COG1124 DppF ABC-type dipeptid 100.0 3.1E-31 6.8E-36 272.3 16.2 161 625-790 2-166 (252)
67 PRK13637 cbiO cobalt transport 100.0 8.5E-31 1.8E-35 282.2 20.3 163 626-790 2-169 (287)
68 cd03219 ABC_Mj1267_LivG_branch 100.0 5.4E-31 1.2E-35 274.8 18.1 156 627-790 1-168 (236)
69 PRK09493 glnQ glutamine ABC tr 100.0 8E-31 1.7E-35 274.5 19.4 157 626-790 1-161 (240)
70 TIGR01186 proV glycine betaine 100.0 4.2E-31 9.2E-36 292.6 18.1 144 645-790 6-154 (363)
71 PRK10070 glycine betaine trans 100.0 7.7E-31 1.7E-35 293.8 20.2 164 625-790 3-189 (400)
72 PRK10584 putative ABC transpor 100.0 1E-30 2.2E-35 271.5 19.5 162 625-790 5-171 (228)
73 PRK11248 tauB taurine transpor 100.0 8.9E-31 1.9E-35 277.5 19.2 153 626-790 1-153 (255)
74 cd03256 ABC_PhnC_transporter A 100.0 8.1E-31 1.8E-35 274.1 18.7 157 627-790 1-169 (241)
75 TIGR00972 3a0107s01c2 phosphat 100.0 1.2E-30 2.7E-35 274.5 19.8 158 626-790 1-169 (247)
76 cd03260 ABC_PstB_phosphate_tra 100.0 8.4E-31 1.8E-35 272.0 18.2 155 627-790 1-166 (227)
77 PRK15079 oligopeptide ABC tran 100.0 1.4E-30 3.1E-35 285.8 20.8 166 624-790 6-186 (331)
78 TIGR01189 ccmA heme ABC export 100.0 1.1E-30 2.4E-35 265.9 18.3 152 627-790 1-152 (198)
79 PRK09536 btuD corrinoid ABC tr 100.0 1E-30 2.3E-35 293.0 19.8 158 625-790 2-164 (402)
80 PRK13647 cbiO cobalt transport 100.0 1.3E-30 2.8E-35 279.1 19.6 159 625-790 3-163 (274)
81 PRK13650 cbiO cobalt transport 100.0 1.2E-30 2.6E-35 280.0 19.4 161 625-790 3-165 (279)
82 TIGR02315 ABC_phnC phosphonate 100.0 9.4E-31 2E-35 274.1 17.7 158 626-790 1-170 (243)
83 PRK11831 putative ABC transpor 100.0 1.8E-30 3.9E-35 277.0 20.2 158 625-790 6-168 (269)
84 PRK13635 cbiO cobalt transport 100.0 1.5E-30 3.2E-35 279.4 19.5 160 625-790 4-165 (279)
85 PRK13634 cbiO cobalt transport 100.0 1.4E-30 3.1E-35 280.9 19.5 161 627-790 3-170 (290)
86 PRK13644 cbiO cobalt transport 100.0 5.6E-31 1.2E-35 281.8 16.2 158 626-790 1-161 (274)
87 PRK11264 putative amino-acid A 100.0 1.8E-30 3.9E-35 273.3 19.4 157 626-790 3-169 (250)
88 PRK13641 cbiO cobalt transport 100.0 1.9E-30 4.1E-35 279.5 19.9 162 626-790 2-170 (287)
89 cd03267 ABC_NatA_like Similar 100.0 1E-30 2.2E-35 273.6 17.2 145 644-790 33-178 (236)
90 PRK13632 cbiO cobalt transport 100.0 1.7E-30 3.7E-35 277.4 19.1 160 625-790 6-167 (271)
91 PLN03140 ABC transporter G fam 100.0 6.5E-29 1.4E-33 314.5 36.5 161 626-790 867-1044(1470)
92 PRK13633 cobalt transporter AT 100.0 2.2E-30 4.8E-35 278.0 19.7 164 624-790 2-169 (280)
93 cd03226 ABC_cobalt_CbiO_domain 100.0 1E-30 2.2E-35 267.5 16.2 149 629-790 2-151 (205)
94 cd03224 ABC_TM1139_LivF_branch 100.0 1.7E-30 3.6E-35 268.5 17.8 154 627-790 1-157 (222)
95 COG1122 CbiO ABC-type cobalt t 100.0 1.1E-30 2.4E-35 272.9 16.5 158 625-790 2-163 (235)
96 PRK10895 lipopolysaccharide AB 100.0 2E-30 4.2E-35 271.8 18.4 157 626-790 3-162 (241)
97 PRK11124 artP arginine transpo 100.0 2.7E-30 5.9E-35 270.9 19.4 157 626-790 2-166 (242)
98 PRK13643 cbiO cobalt transport 100.0 3E-30 6.4E-35 278.2 19.9 162 626-790 1-169 (288)
99 PRK13646 cbiO cobalt transport 100.0 2.6E-30 5.7E-35 278.2 19.4 162 626-790 2-170 (286)
100 cd03257 ABC_NikE_OppD_transpor 100.0 2.8E-30 6.1E-35 267.6 18.9 162 626-790 1-170 (228)
101 cd03231 ABC_CcmA_heme_exporter 100.0 1.8E-30 3.9E-35 265.3 17.2 150 627-790 1-150 (201)
102 PRK13540 cytochrome c biogenes 100.0 3.3E-30 7.2E-35 263.0 18.7 152 626-790 1-152 (200)
103 TIGR03411 urea_trans_UrtD urea 100.0 3.7E-30 8E-35 269.7 19.4 157 626-790 2-168 (242)
104 PRK14267 phosphate ABC transpo 100.0 4.9E-30 1.1E-34 270.7 19.7 160 625-790 3-174 (253)
105 PRK11308 dppF dipeptide transp 100.0 6.3E-30 1.4E-34 280.3 21.0 165 625-790 4-179 (327)
106 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.8E-30 3.9E-35 277.1 16.3 155 628-790 26-185 (269)
107 PRK10619 histidine/lysine/argi 100.0 6.7E-30 1.5E-34 270.5 20.4 159 625-790 4-177 (257)
108 PRK14247 phosphate ABC transpo 100.0 5.9E-30 1.3E-34 269.6 19.9 159 626-790 3-171 (250)
109 cd03235 ABC_Metallic_Cations A 100.0 1.9E-30 4.1E-35 266.8 15.4 150 629-790 2-157 (213)
110 PRK13636 cbiO cobalt transport 100.0 6E-30 1.3E-34 275.1 20.0 159 625-790 4-166 (283)
111 PRK13652 cbiO cobalt transport 100.0 6.4E-30 1.4E-34 274.0 20.1 159 625-790 2-162 (277)
112 PRK13631 cbiO cobalt transport 100.0 5.9E-30 1.3E-34 279.8 20.2 164 624-790 19-201 (320)
113 PRK13649 cbiO cobalt transport 100.0 6.7E-30 1.5E-34 273.9 20.0 162 626-790 2-170 (280)
114 PRK13548 hmuV hemin importer A 100.0 6.3E-30 1.4E-34 271.2 19.6 157 626-790 2-165 (258)
115 PRK13651 cobalt transporter AT 100.0 5.2E-30 1.1E-34 278.5 19.3 162 626-790 2-190 (305)
116 PRK13539 cytochrome c biogenes 100.0 4.6E-30 9.9E-35 263.5 17.8 151 626-790 2-152 (207)
117 PRK13638 cbiO cobalt transport 100.0 5.1E-30 1.1E-34 273.7 18.6 157 626-790 1-161 (271)
118 TIGR02982 heterocyst_DevA ABC 100.0 7.2E-30 1.6E-34 264.1 19.0 161 626-790 1-166 (220)
119 PRK10247 putative ABC transpor 100.0 7.6E-30 1.6E-34 265.1 19.0 157 624-790 5-162 (225)
120 PRK13648 cbiO cobalt transport 100.0 8.7E-30 1.9E-34 271.6 19.9 161 624-790 5-167 (269)
121 COG4175 ProV ABC-type proline/ 100.0 1.4E-30 3.1E-35 274.3 13.3 164 625-790 3-189 (386)
122 TIGR02324 CP_lyasePhnL phospho 100.0 8.9E-30 1.9E-34 263.8 19.1 164 626-790 1-174 (224)
123 PRK14268 phosphate ABC transpo 100.0 1E-29 2.2E-34 269.4 19.9 160 624-790 10-179 (258)
124 TIGR03415 ABC_choXWV_ATP choli 100.0 6.1E-30 1.3E-34 284.9 18.9 145 644-790 36-189 (382)
125 PRK14242 phosphate transporter 100.0 1.1E-29 2.4E-34 268.0 19.8 159 625-790 5-174 (253)
126 PRK15112 antimicrobial peptide 100.0 9.3E-30 2E-34 271.2 19.4 165 625-790 3-174 (267)
127 PRK14241 phosphate transporter 100.0 1.3E-29 2.8E-34 268.5 20.2 159 626-790 4-173 (258)
128 PRK13640 cbiO cobalt transport 100.0 8.7E-30 1.9E-34 273.7 19.0 160 625-790 4-168 (282)
129 TIGR01166 cbiO cobalt transpor 100.0 6.2E-30 1.3E-34 258.6 16.8 143 645-790 5-152 (190)
130 PRK13543 cytochrome c biogenes 100.0 1.1E-29 2.5E-34 261.8 19.1 153 625-790 10-162 (214)
131 cd03298 ABC_ThiQ_thiamine_tran 100.0 7.3E-30 1.6E-34 262.1 17.5 153 627-790 1-153 (211)
132 PRK13642 cbiO cobalt transport 100.0 1.2E-29 2.6E-34 271.8 19.7 160 626-790 4-165 (277)
133 PRK13639 cbiO cobalt transport 100.0 1.3E-29 2.9E-34 271.2 19.6 158 626-790 1-162 (275)
134 PRK14273 phosphate ABC transpo 100.0 1.3E-29 2.9E-34 267.7 19.2 159 625-790 6-175 (254)
135 PRK14235 phosphate transporter 100.0 1.7E-29 3.7E-34 269.3 20.0 160 624-790 17-188 (267)
136 PRK10744 pstB phosphate transp 100.0 1.6E-29 3.5E-34 268.2 19.7 160 624-790 11-181 (260)
137 TIGR03005 ectoine_ehuA ectoine 100.0 1.3E-29 2.7E-34 267.5 18.8 156 627-790 1-171 (252)
138 PRK11231 fecE iron-dicitrate t 100.0 1.6E-29 3.4E-34 267.4 19.0 157 626-790 2-163 (255)
139 PRK11247 ssuB aliphatic sulfon 100.0 1.4E-29 3E-34 268.8 18.6 148 625-790 11-158 (257)
140 PRK10575 iron-hydroxamate tran 100.0 1.6E-29 3.5E-34 269.0 19.2 158 625-790 10-172 (265)
141 COG4525 TauB ABC-type taurine 100.0 4.7E-30 1E-34 254.7 13.7 155 626-790 3-157 (259)
142 TIGR01277 thiQ thiamine ABC tr 100.0 1.3E-29 2.7E-34 261.0 17.5 153 627-790 1-153 (213)
143 PRK11300 livG leucine/isoleuci 100.0 1.7E-29 3.7E-34 266.6 18.9 158 625-790 4-178 (255)
144 PRK14259 phosphate ABC transpo 100.0 2.1E-29 4.5E-34 268.9 19.5 158 625-790 12-179 (269)
145 PRK14256 phosphate ABC transpo 100.0 2.8E-29 6E-34 264.9 20.1 160 625-790 3-173 (252)
146 cd03300 ABC_PotA_N PotA is an 100.0 2.1E-29 4.5E-34 262.9 18.6 155 627-790 1-155 (232)
147 TIGR02769 nickel_nikE nickel i 100.0 2.3E-29 5.1E-34 267.8 19.2 164 626-790 2-175 (265)
148 PRK14269 phosphate ABC transpo 100.0 2.7E-29 5.8E-34 264.3 19.4 158 626-790 2-167 (246)
149 cd03299 ABC_ModC_like Archeal 100.0 2.2E-29 4.8E-34 263.3 18.6 154 627-790 1-154 (235)
150 TIGR03873 F420-0_ABC_ATP propo 100.0 2.5E-29 5.3E-34 266.1 19.0 156 627-790 2-162 (256)
151 PRK11022 dppD dipeptide transp 100.0 2.4E-29 5.1E-34 275.7 19.3 163 626-790 3-178 (326)
152 PRK14274 phosphate ABC transpo 100.0 3.3E-29 7.2E-34 265.5 19.9 160 624-790 10-180 (259)
153 PRK13645 cbiO cobalt transport 100.0 2.3E-29 4.9E-34 271.2 18.8 163 625-790 5-175 (289)
154 TIGR03410 urea_trans_UrtE urea 100.0 1.9E-29 4E-34 262.4 17.4 153 627-790 1-156 (230)
155 PRK14270 phosphate ABC transpo 100.0 3.6E-29 7.9E-34 263.9 19.8 160 624-790 2-172 (251)
156 PRK14250 phosphate ABC transpo 100.0 2E-29 4.4E-34 264.6 17.8 153 626-790 3-156 (241)
157 TIGR00968 3a0106s01 sulfate AB 100.0 2.4E-29 5.2E-34 263.3 18.1 155 627-790 1-155 (237)
158 PRK10253 iron-enterobactin tra 100.0 2.4E-29 5.3E-34 267.6 18.4 158 625-790 6-168 (265)
159 PRK09984 phosphonate/organopho 100.0 3E-29 6.5E-34 266.3 18.8 158 625-790 3-177 (262)
160 PRK14248 phosphate ABC transpo 100.0 5.7E-29 1.2E-33 265.1 21.0 161 623-790 18-189 (268)
161 TIGR01978 sufC FeS assembly AT 100.0 3.2E-29 6.8E-34 262.4 18.3 157 627-790 1-169 (243)
162 PRK11614 livF leucine/isoleuci 100.0 2.8E-29 6.1E-34 262.4 17.7 156 625-790 4-162 (237)
163 TIGR03740 galliderm_ABC gallid 100.0 3.4E-29 7.4E-34 259.4 17.9 149 627-790 1-149 (223)
164 PRK14254 phosphate ABC transpo 100.0 7.1E-29 1.5E-33 267.1 20.2 159 624-790 37-205 (285)
165 PRK14240 phosphate transporter 100.0 6.5E-29 1.4E-33 261.6 19.4 158 626-790 3-171 (250)
166 PRK14245 phosphate ABC transpo 100.0 7.7E-29 1.7E-33 261.2 20.0 159 625-790 2-171 (250)
167 PRK10771 thiQ thiamine transpo 100.0 4E-29 8.6E-34 260.6 17.5 154 626-790 1-154 (232)
168 PRK14262 phosphate ABC transpo 100.0 3E-29 6.4E-34 264.2 16.6 158 626-790 3-171 (250)
169 PRK09473 oppD oligopeptide tra 100.0 7.5E-29 1.6E-33 272.2 20.3 165 624-790 10-186 (330)
170 PRK14237 phosphate transporter 100.0 8.9E-29 1.9E-33 263.7 20.4 161 623-790 17-188 (267)
171 PRK10762 D-ribose transporter 100.0 3.7E-29 8.1E-34 288.9 18.8 158 625-790 3-166 (501)
172 PRK14239 phosphate transporter 100.0 9.6E-29 2.1E-33 260.5 19.7 159 625-790 4-173 (252)
173 cd03297 ABC_ModC_molybdenum_tr 100.0 6.3E-29 1.4E-33 255.9 17.7 148 630-790 4-156 (214)
174 cd03234 ABCG_White The White s 100.0 6.5E-29 1.4E-33 258.0 17.8 159 626-790 3-168 (226)
175 PRK14261 phosphate ABC transpo 100.0 1E-28 2.2E-33 260.8 19.3 160 624-790 4-174 (253)
176 PRK14249 phosphate ABC transpo 100.0 1.2E-28 2.7E-33 259.9 19.8 159 625-790 3-172 (251)
177 PRK13549 xylose transporter AT 100.0 5.5E-29 1.2E-33 287.8 18.7 158 625-790 4-168 (506)
178 PRK14251 phosphate ABC transpo 100.0 1.1E-28 2.4E-33 260.0 19.4 159 625-790 3-172 (251)
179 COG4181 Predicted ABC-type tra 100.0 2.6E-29 5.7E-34 244.8 13.3 161 626-790 6-171 (228)
180 PRK11144 modC molybdate transp 100.0 7.7E-29 1.7E-33 274.4 18.8 148 626-790 1-153 (352)
181 PRK14272 phosphate ABC transpo 100.0 1.3E-28 2.7E-33 259.6 19.5 159 626-790 4-173 (252)
182 PRK11701 phnK phosphonate C-P 100.0 1.4E-28 2.9E-33 260.7 19.2 159 625-790 5-176 (258)
183 TIGR02142 modC_ABC molybdenum 100.0 8.4E-29 1.8E-33 274.3 18.3 148 631-790 4-156 (354)
184 PRK14236 phosphate transporter 100.0 2.1E-28 4.5E-33 261.5 20.3 160 624-790 23-193 (272)
185 PRK14253 phosphate ABC transpo 100.0 1.5E-28 3.2E-33 258.8 18.8 158 626-790 3-170 (249)
186 PRK14260 phosphate ABC transpo 100.0 2.1E-28 4.5E-33 259.6 19.8 159 625-790 6-175 (259)
187 cd03233 ABC_PDR_domain1 The pl 100.0 1E-28 2.2E-33 252.8 16.9 138 626-790 3-143 (202)
188 PRK09700 D-allose transporter 100.0 1.1E-28 2.5E-33 285.5 19.0 158 625-790 4-170 (510)
189 PRK14255 phosphate ABC transpo 100.0 2.8E-28 6.1E-33 257.1 20.2 159 625-790 4-173 (252)
190 PRK15093 antimicrobial peptide 100.0 1.8E-28 3.9E-33 269.2 19.3 163 626-790 3-183 (330)
191 PRK14275 phosphate ABC transpo 100.0 2.3E-28 4.9E-33 263.3 19.6 160 624-790 37-207 (286)
192 PRK15439 autoinducer 2 ABC tra 100.0 1.8E-28 3.9E-33 283.9 19.7 155 624-790 9-165 (510)
193 PRK13541 cytochrome c biogenes 100.0 2E-28 4.2E-33 249.0 17.6 148 626-790 1-148 (195)
194 PRK10261 glutathione transport 100.0 2.4E-28 5.1E-33 289.1 20.7 166 624-790 311-488 (623)
195 PRK13547 hmuV hemin importer A 100.0 2.5E-28 5.4E-33 261.3 18.6 157 626-790 1-179 (272)
196 PRK14243 phosphate transporter 100.0 2.6E-28 5.5E-33 259.8 18.6 158 625-790 9-176 (264)
197 PRK14246 phosphate ABC transpo 100.0 3.2E-28 6.9E-33 258.3 19.2 160 625-790 9-178 (257)
198 PRK14271 phosphate ABC transpo 100.0 4E-28 8.6E-33 260.2 20.0 159 625-790 20-188 (276)
199 PRK14258 phosphate ABC transpo 100.0 3.9E-28 8.5E-33 257.9 19.7 159 625-790 6-175 (261)
200 cd03252 ABCC_Hemolysin The ABC 100.0 9.5E-29 2.1E-33 258.2 14.3 155 627-790 1-163 (237)
201 PRK11288 araG L-arabinose tran 100.0 2.5E-28 5.3E-33 282.1 19.1 158 625-790 3-165 (501)
202 PRK14238 phosphate transporter 100.0 4.1E-28 9E-33 259.2 19.4 160 624-790 22-192 (271)
203 cd03251 ABCC_MsbA MsbA is an e 100.0 2E-28 4.4E-33 255.1 16.5 155 627-790 1-163 (234)
204 PRK10419 nikE nickel transport 100.0 4.5E-28 9.8E-33 258.5 19.4 164 626-790 3-176 (268)
205 PRK10261 glutathione transport 100.0 3.7E-28 8E-33 287.5 20.6 165 624-790 10-193 (623)
206 PRK10418 nikD nickel transport 100.0 3.9E-28 8.5E-33 256.8 18.6 155 626-790 4-165 (254)
207 cd03245 ABCC_bacteriocin_expor 100.0 2.1E-28 4.5E-33 252.7 16.1 151 627-790 3-165 (220)
208 PRK14244 phosphate ABC transpo 100.0 3.7E-28 8E-33 256.2 18.4 157 627-790 6-174 (251)
209 cd03248 ABCC_TAP TAP, the Tran 100.0 1.4E-28 3E-33 255.2 14.6 159 624-790 9-175 (226)
210 PRK14266 phosphate ABC transpo 100.0 5.3E-28 1.1E-32 254.8 19.1 158 626-790 3-171 (250)
211 TIGR02323 CP_lyasePhnK phospho 100.0 4.5E-28 9.7E-33 255.7 18.3 159 625-790 2-173 (253)
212 PRK14263 phosphate ABC transpo 100.0 8.9E-28 1.9E-32 255.4 19.7 159 624-790 6-174 (261)
213 PRK14265 phosphate ABC transpo 100.0 8.6E-28 1.9E-32 257.2 19.6 159 624-790 18-186 (274)
214 TIGR02868 CydC thiol reductant 100.0 2.2E-28 4.9E-33 284.0 16.3 154 625-790 333-495 (529)
215 cd03254 ABCC_Glucan_exporter_l 100.0 3.6E-28 7.9E-33 252.4 16.2 155 626-790 2-164 (229)
216 COG3845 ABC-type uncharacteriz 100.0 3E-28 6.5E-33 270.1 16.1 158 625-790 3-165 (501)
217 TIGR02633 xylG D-xylose ABC tr 100.0 6.3E-28 1.4E-32 278.6 19.2 157 627-790 2-166 (500)
218 KOG0058 Peptide exporter, ABC 100.0 2.6E-28 5.6E-33 280.8 15.7 160 625-790 464-629 (716)
219 PRK15056 manganese/iron transp 100.0 7.2E-28 1.6E-32 257.4 17.7 157 625-790 5-167 (272)
220 PRK14264 phosphate ABC transpo 100.0 1.7E-27 3.8E-32 258.7 21.0 161 623-790 42-225 (305)
221 TIGR03269 met_CoM_red_A2 methy 100.0 5.4E-28 1.2E-32 280.5 17.9 156 627-790 1-193 (520)
222 COG3840 ThiQ ABC-type thiamine 100.0 2E-28 4.3E-33 241.0 11.9 153 626-790 1-154 (231)
223 cd03244 ABCC_MRP_domain2 Domai 100.0 5.1E-28 1.1E-32 250.0 15.7 153 626-790 2-164 (221)
224 CHL00131 ycf16 sulfate ABC tra 100.0 1.4E-27 3E-32 251.7 19.2 159 625-790 6-176 (252)
225 COG4604 CeuD ABC-type enteroch 100.0 4.4E-29 9.5E-34 248.2 6.9 156 626-790 1-160 (252)
226 TIGR02770 nickel_nikD nickel i 100.0 7.4E-28 1.6E-32 250.9 15.9 143 647-790 1-150 (230)
227 PRK10982 galactose/methyl gala 100.0 7.3E-28 1.6E-32 277.5 17.3 154 629-790 1-159 (491)
228 PRK14252 phosphate ABC transpo 100.0 2E-27 4.4E-32 252.8 19.4 159 625-790 15-186 (265)
229 PRK14257 phosphate ABC transpo 100.0 2.6E-27 5.7E-32 259.8 20.4 162 624-790 78-250 (329)
230 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.4E-27 3.1E-32 248.1 17.4 145 627-790 23-167 (224)
231 TIGR03269 met_CoM_red_A2 methy 100.0 1.5E-27 3.2E-32 276.9 19.2 164 625-790 278-452 (520)
232 TIGR01184 ntrCD nitrate transp 100.0 1E-27 2.3E-32 250.0 16.1 137 648-790 1-139 (230)
233 COG1123 ATPase components of v 100.0 1.1E-27 2.5E-32 271.8 17.5 167 623-790 277-454 (539)
234 cd03253 ABCC_ATM1_transporter 99.9 1.7E-27 3.7E-32 248.5 16.7 154 627-790 1-162 (236)
235 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.3E-27 2.9E-32 249.8 15.9 156 627-790 1-164 (238)
236 PRK09700 D-allose transporter 99.9 1.3E-27 2.8E-32 276.7 17.1 157 625-790 264-434 (510)
237 PF00005 ABC_tran: ABC transpo 99.9 8.3E-28 1.8E-32 229.4 12.5 130 648-790 1-133 (137)
238 PRK15134 microcin C ABC transp 99.9 2.9E-27 6.2E-32 275.0 19.3 164 625-790 4-181 (529)
239 COG4161 ArtP ABC-type arginine 99.9 7.3E-28 1.6E-32 232.6 11.7 157 626-790 2-166 (242)
240 PRK09580 sufC cysteine desulfu 99.9 3.3E-27 7.2E-32 248.1 17.8 158 626-790 1-170 (248)
241 cd03289 ABCC_CFTR2 The CFTR su 99.9 2E-27 4.3E-32 254.7 16.2 150 626-790 2-163 (275)
242 cd03229 ABC_Class3 This class 99.9 2E-27 4.4E-32 238.3 15.2 122 627-790 1-125 (178)
243 TIGR02633 xylG D-xylose ABC tr 99.9 1.7E-27 3.8E-32 274.9 16.7 162 625-790 256-428 (500)
244 COG4598 HisP ABC-type histidin 99.9 3.1E-28 6.8E-33 238.8 8.9 158 625-790 5-177 (256)
245 cd03369 ABCC_NFT1 Domain 2 of 99.9 3.4E-27 7.5E-32 241.8 16.9 145 625-790 5-150 (207)
246 PRK15134 microcin C ABC transp 99.9 2.3E-27 5E-32 275.8 17.7 164 625-790 274-450 (529)
247 cd03213 ABCG_EPDR ABCG transpo 99.9 3.6E-27 7.8E-32 239.9 16.6 132 626-790 3-136 (194)
248 PRK09544 znuC high-affinity zi 99.9 3.4E-27 7.4E-32 249.7 16.8 141 625-790 3-145 (251)
249 cd03230 ABC_DR_subfamily_A Thi 99.9 3.9E-27 8.5E-32 235.2 16.2 120 627-790 1-120 (173)
250 PRK11174 cysteine/glutathione 99.9 2.3E-27 5.1E-32 278.8 17.0 152 626-790 349-510 (588)
251 COG1129 MglA ABC-type sugar tr 99.9 3.3E-27 7.1E-32 266.4 17.4 158 625-790 7-170 (500)
252 COG4619 ABC-type uncharacteriz 99.9 4.3E-28 9.3E-33 235.7 8.8 143 644-790 15-158 (223)
253 COG2274 SunT ABC-type bacterio 99.9 1.4E-27 3E-32 282.9 15.1 156 624-790 469-634 (709)
254 PLN03211 ABC transporter G-25; 99.9 2.2E-27 4.8E-32 281.6 16.7 151 629-790 71-231 (659)
255 COG4674 Uncharacterized ABC-ty 99.9 7.1E-28 1.5E-32 239.3 10.2 158 625-790 4-172 (249)
256 PRK13546 teichoic acids export 99.9 9.8E-27 2.1E-31 248.0 19.3 152 625-790 3-168 (264)
257 PRK13549 xylose transporter AT 99.9 4.4E-27 9.5E-32 272.1 17.8 162 625-790 258-430 (506)
258 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 5.4E-27 1.2E-31 280.6 19.2 154 625-790 450-613 (686)
259 cd03290 ABCC_SUR1_N The SUR do 99.9 5E-27 1.1E-31 242.5 16.0 150 628-790 2-165 (218)
260 cd03247 ABCC_cytochrome_bd The 99.9 4.3E-27 9.4E-32 235.8 14.6 123 627-790 1-123 (178)
261 PRK03695 vitamin B12-transport 99.9 4.9E-27 1.1E-31 247.8 15.7 140 647-790 11-158 (248)
262 cd03215 ABC_Carb_Monos_II This 99.9 8.5E-27 1.9E-31 234.6 16.4 122 625-790 3-129 (182)
263 TIGR02857 CydD thiol reductant 99.9 5.1E-27 1.1E-31 272.7 16.9 154 626-790 320-483 (529)
264 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 3.7E-27 8.1E-32 283.0 16.0 155 625-790 476-640 (710)
265 cd03250 ABCC_MRP_domain1 Domai 99.9 5.7E-27 1.2E-31 239.6 14.9 143 627-790 1-152 (204)
266 TIGR00958 3a01208 Conjugate Tr 99.9 5.7E-27 1.2E-31 281.4 16.7 156 625-790 477-642 (711)
267 PRK11160 cysteine/glutathione 99.9 6.5E-27 1.4E-31 274.6 16.6 153 625-790 337-500 (574)
268 KOG0057 Mitochondrial Fe/S clu 99.9 4.8E-27 1.1E-31 262.4 14.5 154 624-790 349-512 (591)
269 COG0444 DppD ABC-type dipeptid 99.9 1.2E-26 2.7E-31 247.6 17.0 162 627-790 2-178 (316)
270 PRK11176 lipid transporter ATP 99.9 6.3E-27 1.4E-31 274.8 16.1 155 626-790 341-505 (582)
271 TIGR01193 bacteriocin_ABC ABC- 99.9 4.8E-27 1E-31 281.9 15.4 155 625-790 472-636 (708)
272 COG4586 ABC-type uncharacteriz 99.9 1.9E-27 4E-32 246.8 10.1 144 645-790 37-181 (325)
273 cd03288 ABCC_SUR2 The SUR doma 99.9 8.3E-27 1.8E-31 247.2 15.0 156 625-790 18-181 (257)
274 PRK10790 putative multidrug tr 99.9 1.1E-26 2.3E-31 273.5 17.2 153 625-790 339-501 (592)
275 PRK10938 putative molybdenum t 99.9 8E-27 1.7E-31 268.8 15.7 149 626-790 3-160 (490)
276 PRK10535 macrolide transporter 99.9 3E-26 6.6E-31 272.2 20.8 162 625-790 3-169 (648)
277 cd03232 ABC_PDR_domain2 The pl 99.9 2.1E-26 4.5E-31 233.9 16.6 129 626-790 3-133 (192)
278 cd03246 ABCC_Protease_Secretio 99.9 1.9E-26 4.1E-31 230.3 15.5 120 627-790 1-121 (173)
279 TIGR01842 type_I_sec_PrtD type 99.9 2.5E-26 5.4E-31 268.0 18.6 157 625-790 315-479 (544)
280 cd03228 ABCC_MRP_Like The MRP 99.9 2E-26 4.4E-31 229.6 14.7 120 627-790 1-121 (171)
281 PRK11819 putative ABC transpor 99.9 2.5E-26 5.5E-31 268.6 17.8 148 625-790 5-188 (556)
282 COG1134 TagH ABC-type polysacc 99.9 2.1E-26 4.6E-31 237.2 14.7 135 643-790 38-172 (249)
283 COG1132 MdlB ABC-type multidru 99.9 2.4E-26 5.2E-31 269.3 17.1 156 625-790 327-490 (567)
284 TIGR03375 type_I_sec_LssB type 99.9 2.2E-26 4.8E-31 275.7 16.8 155 625-790 462-626 (694)
285 PRK15064 ABC transporter ATP-b 99.9 3.7E-26 8.1E-31 265.8 17.8 148 626-790 1-180 (530)
286 PRK13545 tagH teichoic acids e 99.9 6.1E-26 1.3E-30 258.6 18.7 149 625-790 20-168 (549)
287 cd03214 ABC_Iron-Siderophores_ 99.9 1.8E-26 3.8E-31 231.9 12.6 121 628-790 1-122 (180)
288 PRK10938 putative molybdenum t 99.9 3.4E-26 7.4E-31 263.5 16.6 160 624-790 258-426 (490)
289 KOG0055 Multidrug/pheromone ex 99.9 1.4E-26 3E-31 279.4 13.6 157 624-790 348-514 (1228)
290 KOG0055 Multidrug/pheromone ex 99.9 1.9E-26 4E-31 278.3 14.3 155 626-790 987-1151(1228)
291 PRK10762 D-ribose transporter 99.9 5.1E-26 1.1E-30 262.9 17.4 154 625-790 256-420 (501)
292 cd03223 ABCD_peroxisomal_ALDP 99.9 5.3E-26 1.2E-30 225.9 14.9 116 627-790 1-116 (166)
293 COG1123 ATPase components of v 99.9 8.7E-26 1.9E-30 256.5 18.5 164 625-790 4-179 (539)
294 TIGR02203 MsbA_lipidA lipid A 99.9 3.1E-26 6.7E-31 268.2 15.3 156 625-790 329-494 (571)
295 TIGR00955 3a01204 The Eye Pigm 99.9 3.7E-26 8E-31 270.2 16.1 143 644-790 37-191 (617)
296 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 8.4E-26 1.8E-30 264.0 18.1 148 625-790 3-186 (552)
297 COG4167 SapF ABC-type antimicr 99.9 2.7E-26 5.9E-31 225.7 11.6 164 626-790 4-174 (267)
298 TIGR02204 MsbA_rel ABC transpo 99.9 5.3E-26 1.2E-30 266.6 16.4 156 625-790 336-501 (576)
299 PRK11819 putative ABC transpor 99.9 7.5E-26 1.6E-30 264.7 17.5 148 624-790 322-470 (556)
300 PRK10982 galactose/methyl gala 99.9 7.5E-26 1.6E-30 260.8 16.9 157 625-790 249-416 (491)
301 PRK11288 araG L-arabinose tran 99.9 5.6E-26 1.2E-30 262.5 15.8 154 626-790 257-421 (501)
302 cd03217 ABC_FeS_Assembly ABC-t 99.9 8.2E-26 1.8E-30 230.9 15.1 125 627-790 1-129 (200)
303 PRK15064 ABC transporter ATP-b 99.9 9.1E-26 2E-30 262.5 17.3 144 625-790 318-463 (530)
304 PRK13657 cyclic beta-1,2-gluca 99.9 1.2E-25 2.6E-30 264.5 18.4 154 625-790 333-496 (588)
305 COG4559 ABC-type hemin transpo 99.9 6.1E-26 1.3E-30 228.3 13.5 157 626-790 1-166 (259)
306 TIGR01192 chvA glucan exporter 99.9 1.5E-25 3.3E-30 263.5 18.6 156 625-790 333-496 (585)
307 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.2E-25 2.6E-30 262.8 17.4 148 624-790 320-468 (552)
308 PRK10789 putative multidrug tr 99.9 9.7E-26 2.1E-30 264.4 16.4 154 626-790 313-476 (569)
309 COG4988 CydD ABC-type transpor 99.9 8.2E-26 1.8E-30 255.9 15.1 152 627-790 321-481 (559)
310 COG4608 AppF ABC-type oligopep 99.9 7.4E-26 1.6E-30 237.1 13.6 129 625-790 3-134 (268)
311 PTZ00265 multidrug resistance 99.9 6.6E-26 1.4E-30 288.2 16.0 156 625-790 1164-1383(1466)
312 TIGR01846 type_I_sec_HlyB type 99.9 8.2E-26 1.8E-30 270.8 15.9 155 625-790 454-618 (694)
313 COG4133 CcmA ABC-type transpor 99.9 5.9E-26 1.3E-30 225.0 11.7 153 627-790 3-155 (209)
314 COG1101 PhnK ABC-type uncharac 99.9 7.8E-26 1.7E-30 227.9 11.6 164 626-790 1-173 (263)
315 PRK10522 multidrug transporter 99.9 2E-25 4.2E-30 260.7 16.5 147 626-790 322-474 (547)
316 PRK15439 autoinducer 2 ABC tra 99.9 2.7E-25 5.8E-30 257.5 17.3 155 624-790 266-428 (510)
317 TIGR01194 cyc_pep_trnsptr cycl 99.9 2.7E-25 5.9E-30 259.9 16.5 153 625-790 336-495 (555)
318 TIGR03771 anch_rpt_ABC anchore 99.9 3.2E-25 6.9E-30 230.3 14.5 132 653-790 1-138 (223)
319 PRK11147 ABC transporter ATPas 99.9 4.6E-25 1E-29 261.8 17.4 148 624-790 317-465 (635)
320 PLN03232 ABC transporter C fam 99.9 2.5E-25 5.4E-30 284.7 16.1 154 625-790 1233-1396(1495)
321 PLN03130 ABC transporter C fam 99.9 2.9E-25 6.3E-30 284.8 16.4 154 625-790 1236-1399(1622)
322 PRK15177 Vi polysaccharide exp 99.9 3E-25 6.5E-30 229.2 13.4 128 646-790 1-129 (213)
323 KOG0056 Heavy metal exporter H 99.9 6.9E-26 1.5E-30 248.3 8.7 158 624-790 535-699 (790)
324 cd03237 ABC_RNaseL_inhibitor_d 99.9 3.8E-25 8.3E-30 233.5 14.1 127 647-790 9-140 (246)
325 COG1119 ModF ABC-type molybden 99.9 2.5E-25 5.4E-30 229.1 11.6 160 623-790 28-196 (257)
326 cd03216 ABC_Carb_Monos_I This 99.9 8E-25 1.7E-29 216.8 14.6 105 627-790 1-107 (163)
327 PTZ00265 multidrug resistance 99.9 4.5E-25 9.7E-30 280.7 15.6 161 626-790 382-604 (1466)
328 TIGR00954 3a01203 Peroxysomal 99.9 6.5E-25 1.4E-29 261.3 16.0 148 625-790 450-607 (659)
329 COG4148 ModC ABC-type molybdat 99.9 1.4E-25 3.1E-30 233.2 8.7 133 650-790 16-153 (352)
330 TIGR01187 potA spermidine/putr 99.9 7.2E-25 1.6E-29 240.3 14.2 125 663-790 1-125 (325)
331 PTZ00243 ABC transporter; Prov 99.9 1E-24 2.3E-29 279.2 17.6 154 625-790 1307-1471(1560)
332 cd03236 ABC_RNaseL_inhibitor_d 99.9 6.3E-25 1.4E-29 233.0 12.9 147 630-790 4-164 (255)
333 PRK13409 putative ATPase RIL; 99.9 1.6E-24 3.4E-29 254.4 17.3 140 625-790 339-478 (590)
334 cd03291 ABCC_CFTR1 The CFTR su 99.9 1.5E-24 3.2E-29 233.3 15.6 140 623-790 36-184 (282)
335 KOG0061 Transporter, ABC super 99.9 1.9E-24 4.1E-29 254.5 17.9 160 626-790 25-195 (613)
336 TIGR00957 MRP_assoc_pro multi 99.9 1.1E-24 2.3E-29 279.4 16.8 154 625-790 1283-1446(1522)
337 COG4136 ABC-type uncharacteriz 99.9 1.2E-24 2.5E-29 208.3 11.5 155 626-790 2-159 (213)
338 PRK10636 putative ABC transpor 99.9 3.4E-24 7.4E-29 254.3 18.0 147 626-790 1-174 (638)
339 TIGR00956 3a01205 Pleiotropic 99.9 1.9E-24 4.2E-29 274.4 15.5 145 644-790 73-234 (1394)
340 COG4618 ArpD ABC-type protease 99.9 5.7E-24 1.2E-28 236.0 16.8 160 624-790 332-497 (580)
341 PRK10636 putative ABC transpor 99.9 4.3E-24 9.4E-29 253.4 17.0 144 624-790 310-455 (638)
342 COG4172 ABC-type uncharacteriz 99.9 6.1E-24 1.3E-28 229.9 16.5 165 624-790 274-451 (534)
343 COG4987 CydC ABC-type transpor 99.9 9.1E-25 2E-29 244.2 9.3 154 626-790 336-499 (573)
344 KOG0065 Pleiotropic drug resis 99.9 1.3E-22 2.9E-27 245.1 26.9 160 625-790 786-955 (1391)
345 TIGR01271 CFTR_protein cystic 99.9 7.2E-24 1.6E-28 271.1 16.9 153 625-790 1216-1378(1490)
346 PLN03073 ABC transporter F fam 99.9 2.9E-23 6.4E-28 248.1 18.3 144 625-790 507-652 (718)
347 COG4778 PhnL ABC-type phosphon 99.9 7.1E-24 1.5E-28 206.7 9.6 165 625-790 3-177 (235)
348 PRK13409 putative ATPase RIL; 99.9 8.2E-24 1.8E-28 248.4 11.9 144 630-790 77-237 (590)
349 PRK11147 ABC transporter ATPas 99.9 5.5E-23 1.2E-27 244.1 18.1 145 626-790 3-181 (635)
350 PLN03140 ABC transporter G fam 99.9 1.3E-23 2.7E-28 266.7 13.3 145 644-790 177-361 (1470)
351 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 3.7E-23 8.1E-28 201.0 13.5 95 627-790 1-95 (144)
352 COG0396 sufC Cysteine desulfur 99.9 9.7E-23 2.1E-27 207.9 16.1 160 625-790 2-169 (251)
353 COG0488 Uup ATPase components 99.9 8.3E-23 1.8E-27 235.5 16.2 147 625-790 2-178 (530)
354 COG4172 ABC-type uncharacteriz 99.9 3.2E-22 6.9E-27 216.7 14.9 165 624-790 4-182 (534)
355 cd03222 ABC_RNaseL_inhibitor T 99.9 2E-22 4.4E-27 202.7 12.1 93 630-790 4-96 (177)
356 cd00267 ABC_ATPase ABC (ATP-bi 99.9 4.8E-22 1E-26 195.1 14.1 103 629-790 2-105 (157)
357 PLN03232 ABC transporter C fam 99.9 5.9E-22 1.3E-26 253.9 15.3 144 625-790 613-765 (1495)
358 TIGR00957 MRP_assoc_pro multi 99.9 8.7E-22 1.9E-26 252.7 16.6 146 625-790 635-785 (1522)
359 PLN03130 ABC transporter C fam 99.9 7.6E-22 1.6E-26 253.5 15.2 143 625-790 613-765 (1622)
360 TIGR01271 CFTR_protein cystic 99.9 1.5E-21 3.2E-26 250.0 14.7 130 645-790 439-573 (1490)
361 PLN03073 ABC transporter F fam 99.9 7.4E-22 1.6E-26 236.2 10.0 160 624-790 175-369 (718)
362 COG4107 PhnK ABC-type phosphon 99.9 1.5E-21 3.2E-26 191.1 10.1 156 624-790 4-176 (258)
363 cd03238 ABC_UvrA The excision 99.8 6.4E-21 1.4E-25 191.7 12.0 106 644-790 7-114 (176)
364 COG5265 ATM1 ABC-type transpor 99.8 3.8E-21 8.2E-26 209.6 9.1 154 625-790 261-424 (497)
365 COG0488 Uup ATPase components 99.8 1.8E-20 3.9E-25 216.2 15.1 146 623-790 318-464 (530)
366 PTZ00243 ABC transporter; Prov 99.8 1.2E-20 2.5E-25 242.2 13.9 129 644-790 672-807 (1560)
367 KOG0054 Multidrug resistance-a 99.8 1.2E-20 2.7E-25 232.9 13.3 154 625-790 1137-1300(1381)
368 KOG0054 Multidrug resistance-a 99.8 2.5E-19 5.4E-24 221.5 16.2 145 623-790 515-668 (1381)
369 COG4615 PvdE ABC-type sideroph 99.8 1E-18 2.2E-23 189.1 9.1 150 624-790 320-473 (546)
370 cd03272 ABC_SMC3_euk Eukaryoti 99.7 9.5E-19 2.1E-23 183.5 6.2 138 645-790 15-187 (243)
371 cd03278 ABC_SMC_barmotin Barmo 99.7 1.5E-18 3.2E-23 177.6 6.8 116 649-790 14-142 (197)
372 cd03270 ABC_UvrA_I The excisio 99.7 9.1E-18 2E-22 175.1 12.6 138 644-790 7-164 (226)
373 cd03274 ABC_SMC4_euk Eukaryoti 99.7 1.5E-19 3.3E-24 186.8 -1.8 137 626-790 5-156 (212)
374 COG1129 MglA ABC-type sugar tr 99.7 2.9E-17 6.3E-22 186.2 15.4 155 625-790 262-426 (500)
375 cd03273 ABC_SMC2_euk Eukaryoti 99.7 1.8E-17 3.9E-22 175.3 3.5 133 658-790 25-195 (251)
376 COG4178 ABC-type uncharacteriz 99.7 3.2E-16 6.8E-21 181.0 13.9 145 624-790 390-540 (604)
377 KOG0927 Predicted transporter 99.7 9.3E-17 2E-21 180.0 8.4 146 624-790 387-534 (614)
378 cd03271 ABC_UvrA_II The excisi 99.7 2.4E-16 5.2E-21 167.8 10.7 139 645-790 8-197 (261)
379 COG3845 ABC-type uncharacteriz 99.6 1.6E-15 3.6E-20 169.3 16.1 161 624-790 255-428 (501)
380 COG1245 Predicted ATPase, RNas 99.6 9.4E-16 2E-20 168.9 10.6 139 626-790 342-480 (591)
381 KOG0060 Long-chain acyl-CoA tr 99.6 3.1E-15 6.6E-20 169.0 13.2 155 624-790 431-595 (659)
382 KOG0927 Predicted transporter 99.6 3.2E-15 7E-20 167.8 12.3 160 624-790 73-246 (614)
383 COG4138 BtuD ABC-type cobalami 99.6 4.7E-16 1E-20 152.9 3.9 136 647-790 14-157 (248)
384 cd03279 ABC_sbcCD SbcCD and ot 99.6 8.1E-16 1.8E-20 158.9 4.8 141 626-790 5-158 (213)
385 KOG0065 Pleiotropic drug resis 99.6 2E-15 4.4E-20 183.5 6.8 145 644-790 127-285 (1391)
386 cd03240 ABC_Rad50 The catalyti 99.6 1.6E-15 3.5E-20 156.0 5.0 115 652-790 17-146 (204)
387 KOG0062 ATPase component of AB 99.6 6.8E-15 1.5E-19 164.4 9.4 144 624-790 78-223 (582)
388 KOG2355 Predicted ABC-type tra 99.5 6.5E-14 1.4E-18 141.0 11.4 151 624-790 11-172 (291)
389 KOG0064 Peroxisomal long-chain 99.5 2.4E-14 5.1E-19 159.9 5.4 144 625-790 480-637 (728)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.5 1.5E-13 3.2E-18 140.9 9.6 122 647-790 11-138 (198)
391 PRK00349 uvrA excinuclease ABC 99.5 2.7E-13 5.9E-18 165.9 13.4 65 719-790 791-858 (943)
392 PRK00635 excinuclease ABC subu 99.5 3.1E-13 6.7E-18 172.1 13.3 151 626-790 600-837 (1809)
393 KOG0066 eIF2-interacting prote 99.4 1.8E-13 4E-18 149.5 9.6 143 624-790 584-729 (807)
394 KOG0062 ATPase component of AB 99.4 3.5E-13 7.6E-18 150.9 8.8 148 624-790 360-507 (582)
395 COG2401 ABC-type ATPase fused 99.4 1.3E-12 2.8E-17 142.9 9.1 129 644-790 395-532 (593)
396 COG4170 SapD ABC-type antimicr 99.4 5.6E-13 1.2E-17 134.6 5.8 163 626-790 3-183 (330)
397 cd00820 PEPCK_HprK Phosphoenol 99.3 1E-12 2.2E-17 121.6 6.2 75 645-728 2-77 (107)
398 cd03275 ABC_SMC1_euk Eukaryoti 99.3 9.5E-13 2.1E-17 139.2 4.0 149 626-790 3-184 (247)
399 TIGR00630 uvra excinuclease AB 99.3 1.3E-11 2.8E-16 151.1 12.1 65 719-790 789-856 (924)
400 COG1245 Predicted ATPase, RNas 99.3 2.3E-12 4.9E-17 142.5 5.0 142 631-790 79-238 (591)
401 KOG0066 eIF2-interacting prote 99.1 8.9E-11 1.9E-15 128.8 7.3 158 626-790 264-437 (807)
402 cd03280 ABC_MutS2 MutS2 homolo 99.1 8.5E-11 1.8E-15 120.4 5.7 91 647-790 16-115 (200)
403 KOG0063 RNAse L inhibitor, ABC 99.1 3.8E-10 8.3E-15 124.2 9.8 128 645-790 349-481 (592)
404 cd03285 ABC_MSH2_euk MutS2 hom 99.1 1.9E-10 4.1E-15 120.1 6.5 97 645-790 17-116 (222)
405 PF12698 ABC2_membrane_3: ABC- 99.1 3.9E-11 8.5E-16 128.6 1.1 166 367-558 178-344 (344)
406 cd03282 ABC_MSH4_euk MutS4 hom 99.0 3.4E-10 7.4E-15 116.8 4.9 100 645-790 16-115 (204)
407 cd03283 ABC_MutS-like MutS-lik 99.0 2.8E-10 6E-15 116.9 3.5 125 645-788 14-143 (199)
408 cd03277 ABC_SMC5_euk Eukaryoti 98.9 2.1E-09 4.7E-14 111.5 6.4 34 757-790 118-155 (213)
409 cd03241 ABC_RecN RecN ATPase i 98.9 3.2E-09 6.8E-14 114.3 7.0 32 647-679 11-42 (276)
410 cd03242 ABC_RecF RecF is a rec 98.8 3.3E-08 7.1E-13 106.1 14.0 141 647-790 11-217 (270)
411 PRK06995 flhF flagellar biosyn 98.8 3.6E-09 7.7E-14 121.4 6.9 123 647-790 245-373 (484)
412 TIGR03238 dnd_assoc_3 dnd syst 98.8 1.4E-09 2.9E-14 123.3 3.1 67 645-713 19-86 (504)
413 TIGR02858 spore_III_AA stage I 98.8 1.1E-08 2.4E-13 109.9 7.7 66 659-725 112-179 (270)
414 PRK07196 fliI flagellum-specif 98.7 9.7E-09 2.1E-13 116.5 5.1 88 645-733 143-240 (434)
415 cd03227 ABC_Class2 ABC-type Cl 98.7 2E-08 4.3E-13 99.7 5.4 91 648-790 11-106 (162)
416 cd03239 ABC_SMC_head The struc 98.7 4.3E-08 9.3E-13 99.1 7.4 25 766-790 95-123 (178)
417 cd03243 ABC_MutS_homologs The 98.6 5.2E-08 1.1E-12 100.0 7.0 33 649-681 20-52 (202)
418 PTZ00132 GTP-binding nuclear p 98.6 3.1E-08 6.8E-13 102.1 5.1 128 660-790 11-177 (215)
419 PRK06002 fliI flagellum-specif 98.6 1E-07 2.3E-12 108.3 9.1 86 624-715 137-230 (450)
420 cd01130 VirB11-like_ATPase Typ 98.6 5.7E-08 1.2E-12 98.5 5.6 84 647-732 14-99 (186)
421 PRK06793 fliI flagellum-specif 98.6 2.7E-07 5.9E-12 104.8 11.6 122 625-794 129-257 (432)
422 KOG0063 RNAse L inhibitor, ABC 98.4 1.9E-07 4.1E-12 103.4 4.4 132 656-790 98-238 (592)
423 PRK06315 type III secretion sy 98.4 7.5E-07 1.6E-11 101.5 8.2 121 645-767 152-293 (442)
424 cd02023 UMPK Uridine monophosp 98.4 3.2E-07 6.8E-12 93.6 4.3 105 660-790 1-105 (198)
425 PRK09825 idnK D-gluconate kina 98.3 4.1E-07 8.8E-12 91.8 4.5 68 657-728 2-69 (176)
426 PRK00635 excinuclease ABC subu 98.3 2.3E-06 5E-11 110.5 12.3 137 646-790 1504-1727(1809)
427 cd03284 ABC_MutS1 MutS1 homolo 98.3 9.5E-07 2.1E-11 92.0 6.3 71 645-728 18-88 (216)
428 TIGR01069 mutS2 MutS2 family p 98.3 5.5E-07 1.2E-11 109.6 4.6 94 650-790 313-409 (771)
429 PRK09270 nucleoside triphospha 98.2 1.2E-06 2.5E-11 91.9 5.6 73 657-733 32-108 (229)
430 cd01128 rho_factor Transcripti 98.2 5.7E-07 1.2E-11 95.7 3.1 123 653-789 11-161 (249)
431 PRK07721 fliI flagellum-specif 98.2 1.8E-06 4E-11 98.6 6.9 70 645-715 146-224 (438)
432 TIGR00554 panK_bact pantothena 98.2 1.1E-06 2.5E-11 95.3 4.9 74 659-733 63-138 (290)
433 PRK00064 recF recombination pr 98.2 2E-05 4.4E-10 88.3 13.4 35 647-682 13-47 (361)
434 COG0178 UvrA Excinuclease ATPa 98.1 1.3E-05 2.7E-10 95.3 11.5 65 719-790 783-850 (935)
435 cd03281 ABC_MSH5_euk MutS5 hom 98.1 9.2E-06 2E-10 84.5 7.8 56 647-713 18-75 (213)
436 PRK01889 GTPase RsgA; Reviewed 98.0 7.4E-06 1.6E-10 91.6 7.3 78 648-728 185-262 (356)
437 PRK10078 ribose 1,5-bisphospho 98.0 6.4E-06 1.4E-10 83.5 6.1 76 658-736 2-79 (186)
438 cd01854 YjeQ_engC YjeQ/EngC. 98.0 3.2E-06 6.9E-11 91.8 4.1 85 648-733 152-244 (287)
439 PRK08149 ATP synthase SpaL; Va 98.0 7.1E-06 1.5E-10 93.3 7.0 68 645-713 139-214 (428)
440 PRK14721 flhF flagellar biosyn 98.0 4.1E-06 9E-11 95.1 4.5 95 655-774 188-284 (420)
441 TIGR00235 udk uridine kinase. 98.0 2.3E-06 5E-11 88.2 1.9 29 656-684 4-32 (207)
442 PRK10416 signal recognition pa 97.9 7.3E-06 1.6E-10 90.3 4.8 73 656-728 112-191 (318)
443 PRK07594 type III secretion sy 97.9 9.9E-06 2.2E-10 92.3 6.0 65 625-695 128-192 (433)
444 cd01136 ATPase_flagellum-secre 97.9 1.4E-05 3.1E-10 88.0 7.0 50 645-695 57-106 (326)
445 PF02463 SMC_N: RecF/RecN/SMC 97.9 2.6E-06 5.6E-11 88.2 1.0 42 741-790 120-165 (220)
446 smart00534 MUTSac ATPase domai 97.9 4.9E-06 1.1E-10 84.4 2.4 32 758-790 54-85 (185)
447 PRK09862 putative ATP-dependen 97.9 1.1E-05 2.4E-10 93.7 4.8 61 630-696 188-248 (506)
448 PRK07960 fliI flagellum-specif 97.8 1.7E-05 3.6E-10 90.5 5.6 69 645-714 163-238 (455)
449 TIGR02524 dot_icm_DotB Dot/Icm 97.8 7E-06 1.5E-10 91.8 1.9 117 656-774 132-268 (358)
450 TIGR02546 III_secr_ATP type II 97.8 3.5E-05 7.6E-10 88.0 7.2 75 645-720 133-214 (422)
451 PRK08533 flagellar accessory p 97.8 8E-05 1.7E-09 78.4 9.3 52 627-693 8-60 (230)
452 PRK14722 flhF flagellar biosyn 97.8 1.9E-05 4.1E-10 88.6 4.8 73 646-737 125-197 (374)
453 smart00382 AAA ATPases associa 97.8 0.00016 3.4E-09 66.7 9.7 40 657-696 1-41 (148)
454 PRK09099 type III secretion sy 97.8 3.1E-05 6.8E-10 88.5 6.0 51 645-696 151-201 (441)
455 TIGR03498 FliI_clade3 flagella 97.7 3.1E-05 6.8E-10 88.1 5.7 52 645-697 128-179 (418)
456 PRK14723 flhF flagellar biosyn 97.7 9E-05 2E-09 89.4 9.6 71 647-736 174-244 (767)
457 TIGR03497 FliI_clade2 flagella 97.7 3.8E-05 8.2E-10 87.4 6.1 69 645-714 125-202 (413)
458 cd02025 PanK Pantothenate kina 97.7 2.5E-05 5.4E-10 81.7 4.0 32 660-691 1-34 (220)
459 PRK00098 GTPase RsgA; Reviewed 97.7 5E-05 1.1E-09 83.0 5.8 75 657-731 163-245 (298)
460 TIGR01026 fliI_yscN ATPase Fli 97.7 4.1E-05 8.9E-10 87.7 5.4 51 645-696 151-201 (440)
461 PLN02318 phosphoribulokinase/u 97.7 3.8E-05 8.3E-10 89.7 4.8 63 659-728 66-128 (656)
462 TIGR03496 FliI_clade1 flagella 97.7 5.6E-05 1.2E-09 85.9 6.1 64 626-695 111-174 (411)
463 PF13555 AAA_29: P-loop contai 97.7 5.3E-05 1.1E-09 63.6 4.3 38 648-685 12-50 (62)
464 PRK00300 gmk guanylate kinase; 97.7 3.5E-05 7.5E-10 78.8 3.9 39 656-696 3-53 (205)
465 PRK05688 fliI flagellum-specif 97.7 4.1E-05 8.9E-10 87.6 4.8 52 645-697 156-210 (451)
466 cd03287 ABC_MSH3_euk MutS3 hom 97.6 3.3E-05 7.2E-10 81.0 3.6 47 645-691 18-65 (222)
467 PRK00349 uvrA excinuclease ABC 97.6 8.7E-05 1.9E-09 92.1 7.5 69 718-790 435-516 (943)
468 PRK08472 fliI flagellum-specif 97.6 5E-05 1.1E-09 86.6 4.9 53 645-698 145-197 (434)
469 TIGR00630 uvra excinuclease AB 97.6 0.00011 2.3E-09 91.2 8.0 70 719-790 434-514 (924)
470 TIGR02322 phosphon_PhnN phosph 97.6 0.00012 2.5E-09 73.4 6.8 65 658-723 1-82 (179)
471 TIGR02788 VirB11 P-type DNA tr 97.6 9E-05 2E-09 81.3 5.7 81 649-731 135-216 (308)
472 PRK03846 adenylylsulfate kinas 97.6 5.3E-05 1.2E-09 77.6 3.6 56 656-714 22-78 (198)
473 PRK05922 type III secretion sy 97.5 0.0001 2.3E-09 84.0 6.2 50 645-695 145-194 (434)
474 PRK13695 putative NTPase; Prov 97.5 2.9E-05 6.3E-10 77.7 1.5 31 760-790 73-103 (174)
475 cd02026 PRK Phosphoribulokinas 97.5 6.6E-05 1.4E-09 81.1 4.3 54 660-714 1-54 (273)
476 cd00879 Sar1 Sar1 subfamily. 97.5 6.3E-05 1.4E-09 75.5 3.8 49 647-696 9-65 (190)
477 cd04159 Arl10_like Arl10-like 97.5 3E-05 6.6E-10 73.9 1.1 37 661-697 2-52 (159)
478 TIGR00101 ureG urease accessor 97.5 8.9E-05 1.9E-09 76.4 4.3 56 660-716 3-59 (199)
479 PLN02796 D-glycerate 3-kinase 97.5 3.6E-05 7.9E-10 85.1 1.5 53 646-698 80-143 (347)
480 TIGR00767 rho transcription te 97.5 0.00022 4.7E-09 80.4 7.4 56 625-685 129-195 (415)
481 cd01876 YihA_EngB The YihA (En 97.5 6.6E-05 1.4E-09 72.2 2.8 29 661-689 2-32 (170)
482 PRK00409 recombination and DNA 97.5 7.7E-05 1.7E-09 91.3 3.9 97 647-790 317-414 (782)
483 TIGR00606 rad50 rad50. This fa 97.4 0.00015 3.3E-09 93.8 6.5 55 658-713 28-87 (1311)
484 cd01120 RecA-like_NTPases RecA 97.4 0.00028 6E-09 67.9 6.6 92 660-790 1-92 (165)
485 PRK11545 gntK gluconate kinase 97.4 4.2E-05 9.2E-10 76.2 0.8 61 664-729 1-62 (163)
486 PRK04863 mukB cell division pr 97.4 0.00019 4E-09 92.7 6.0 47 648-695 18-64 (1486)
487 PRK08972 fliI flagellum-specif 97.4 0.00018 4E-09 82.0 5.1 40 645-685 150-189 (444)
488 cd04155 Arl3 Arl3 subfamily. 97.3 0.00028 6E-09 69.4 5.1 37 660-696 16-60 (173)
489 TIGR00368 Mg chelatase-related 97.3 0.00015 3.3E-09 84.5 3.3 53 645-697 198-250 (499)
490 PRK14079 recF recombination pr 97.3 0.00054 1.2E-08 76.6 7.5 30 648-678 14-43 (349)
491 PRK05480 uridine/cytidine kina 97.2 0.00032 6.8E-09 72.3 4.9 27 656-682 4-30 (209)
492 TIGR01360 aden_kin_iso1 adenyl 97.2 5E-05 1.1E-09 76.1 -1.4 67 658-727 3-72 (188)
493 PRK06820 type III secretion sy 97.2 0.00043 9.4E-09 79.2 5.9 49 645-694 151-199 (440)
494 PRK06936 type III secretion sy 97.2 0.0004 8.8E-09 79.3 5.4 41 645-686 150-190 (439)
495 TIGR02903 spore_lon_C ATP-depe 97.2 0.00095 2.1E-08 80.0 8.3 41 656-696 173-221 (615)
496 PRK00454 engB GTP-binding prot 97.1 0.00025 5.3E-09 71.4 2.6 22 660-681 26-47 (196)
497 cd01131 PilT Pilus retraction 97.1 0.0014 3E-08 67.4 7.5 37 660-696 3-40 (198)
498 cd04104 p47_IIGP_like p47 (47- 97.0 0.00056 1.2E-08 70.0 4.0 34 661-694 4-37 (197)
499 TIGR03263 guanyl_kin guanylate 97.0 0.00057 1.2E-08 68.3 3.8 26 658-683 1-26 (180)
500 PF13476 AAA_23: AAA domain; P 97.0 0.00058 1.3E-08 68.5 3.7 33 647-680 9-41 (202)
No 1
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=7.5e-69 Score=652.58 Aligned_cols=646 Identities=32% Similarity=0.448 Sum_probs=499.1
Q ss_pred ccccccccccCCCccccCCCCCCCCCCCccccCCcccccccccCCCCCCCCCCCCCCCCCCceEEEeccCCcchhhhhhh
Q 003716 80 VEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDFLTYPDLPNESCRIDGSCPATILLTGNNQSFGQTLNK 159 (800)
Q Consensus 80 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 159 (800)
+-+.|..|+....+...|+ .++.++|+...+.++++.... +..-.|+.+..|++.+.++|.+++.+.
T Consensus 45 ~~~~~~~~~~p~~~~~~~~--~~~~~lp~~~~~~~~~~~l~~-------~~~~~~~~t~l~~vfl~~~~~~~~~~~---- 111 (885)
T KOG0059|consen 45 QVTLFIQQHIPDARLVECP--KLVYLLPLKYRREFLFRGLDL-------IASFGVSLTTLEEVFLKLGGESDSLEN---- 111 (885)
T ss_pred HHHHHHHhhCccceecccc--cccccCChhccccchhhhhhc-------ccccccccccHHHHHhhcccccccccc----
Confidence 4467889999999999999 999999999999988777632 566778888999999999999988877
Q ss_pred cccCCCCCCCchhhHHhhhhhccCCCCCCCcccccCCCCCCCCCeEEecCCCCCCC-ceeEeeecccc--ccccceeeec
Q 003716 160 DMFKDTFSENPSDVMASLADNVLGSDSKTEITNYVEPAFVSDSPIYTIQSQCRPDS-SFVVPVKVASI--NISLVIRCLQ 236 (800)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~-~~~~~~~~~~~--~~~~~~~~~~ 236 (800)
++..+.+ +....+.+++.+++.....+++..+++|.+-. ...+.+..... ..+.++.|.+
T Consensus 112 ---------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (885)
T KOG0059|consen 112 ---------------DSTEDQV--SGPAKAYTQFQALLRKRFLPLRRNWRLFLAQLLLPSIFVVLALVFSDPHLTLSPSL 174 (885)
T ss_pred ---------------ccccccc--chhHHhhhhHHHHHHHhhhhhhhhhhhHHHHHhhHHHHHHHHHhccCccccCCccc
Confidence 1112222 55677888899999999999999999998832 22222221111 1145788999
Q ss_pred cccccccChhhhhHHhhcccccCCchhhhcceeeEEEe------------------------eccCCCceeEEEEEcccc
Q 003716 237 GLNLWRKSSSEINDELYRGFRKGNSKRESNEILAAYDF------------------------LNSDLEKFNVNIWYNSTY 292 (800)
Q Consensus 237 ~~~~~~~~~~~in~~l~~~~~~~~~~~~~~~~~~a~~f------------------------~~~~~~~~~v~i~yN~t~ 292 (800)
....|.+.+..++++...+...++. .......+++. .........+.+|+|+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~n~k- 251 (885)
T KOG0059|consen 175 YGALYTNYSGEINTEEFLSVLEANG--KGRNLSLALNNINTEVDNFTVDNWTESSSKNKGDMLGRDLKDVRVSVLFNNK- 251 (885)
T ss_pred cceeeecCCccCCccHHHHhhhccc--ccchhhhhhhcchhhheeeeecceeccccccchhhhcCccccceEEEeeehh-
Confidence 9999999999999988766554431 00111111111 12223345566666663
Q ss_pred CCCCCCCccccchhhhHHHHHHHHHHhhhcCCCceeeeeeeecCCCcchhhhhhh-HhHHHHHHHHHHHHHHHHHHHHHH
Q 003716 293 KNDTGNVPIGLLRVPRSINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDV-SSIIGTLFFTWVVLQLFPVILTAL 371 (800)
Q Consensus 293 ~~~~~~~~~~~~~~p~~lN~v~naiLr~~~g~~~~i~~~~~~~~P~~~~~~~~d~-~s~~~~lf~~~~i~~lfp~~v~~i 371 (800)
.+|..|.++|..+|++++...+.+ + ...++|+|+.......+. ..++++.|+.+++...+|.++...
T Consensus 252 ---------~~~~~~~~~~~~~n~l~~~~~~~~--i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 319 (885)
T KOG0059|consen 252 ---------GLHTLPFLLGLGSNALRRALNLSG--I-SVLNEPMPLSGAQLSLDLLADLLGALFLLFVFLLLFSVFLLSL 319 (885)
T ss_pred ---------hhhhHHHhcchHHHHHHHhhcccc--c-eeeecCcCccHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHhHH
Confidence 245678889999999999887655 3 346889998877666666 678889999999999999999999
Q ss_pred HHHHHHHHHHHchHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeccchHHHHHHHHHHHHHHHHHHHHHH
Q 003716 372 VYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVA 451 (800)
Q Consensus 372 V~EKe~klK~~m~m~Gl~~~~YWl~~~~~~l~~~~i~li~~ii~~~~~~~~~f~~~~~~~~fll~~lyg~s~I~~ayllS 451 (800)
|+||+.|+||+|+|+|+++.+||+++++|+++.+++.++++.+++.+++ ++..++...+++++++|++++++++|++|
T Consensus 320 i~e~~~~~~~~~~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~--~~~~~~~~~~~~~~~l~~~s~i~l~y~~s 397 (885)
T KOG0059|consen 320 ILERQQRLRHQQLIAGLSPSTYWLFALVWDLLLYLLILLILLIFVLIFG--FFAGNNTVIILLLLLLYIRSAIPLTYILS 397 (885)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhheee--cccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888888887776 67778899999999999999999999999
Q ss_pred HhhCchhHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhhhhcccchHHHHHHHHHHHhhhhccccCCCCCCccccC
Q 003716 452 ALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADL 531 (800)
Q Consensus 452 ~fFs~~~tA~v~~~i~~~~~~ll~~~l~~~~~~~~~~~~~~~~~l~l~P~~~l~~gl~~l~~~~~~~~~~~~~g~~w~~l 531 (800)
++|+++.+|++..+++.+++++.+.+....+......+..+.+...+.|.+.+.++.+.+.+...........++.|.++
T Consensus 398 ~~f~~~~~~~v~~~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 477 (885)
T KOG0059|consen 398 FIFSKESTASVILSIYNLISGLLVFFAVFILQSFANGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLNLNDGMSLEVL 477 (885)
T ss_pred HHhcCCcCceeehhhHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 99999999999988888877765444444444444455566777778899999999888887766554444556777765
Q ss_pred CCCC--c---------chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccCCCCCCCCCCCC-cccc
Q 003716 532 SDSE--N---------GMKEVLIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQD-SKVF 599 (800)
Q Consensus 532 ~~~~--~---------gi~~~li~m~i~~ilyllL~~yld~v~~~~~gk~p~ffl~~~~~~~~~~~~~~~~~~~~-~~~~ 599 (800)
.... . ..+..++.+..++..+.++...+..- +.++ . +.. ..+.. ....
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~---------------~~~~-~---~~~-~~~~~~~~~~ 537 (885)
T KOG0059|consen 478 GNDESFYTLLLEWLLPLIGRRYLALVTEGVKDDLFFLLIFVP---------------FKRR-M---RAL-TQNMLKGFEP 537 (885)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------------hccc-c---ccc-cccccCCCcC
Confidence 4320 0 01222333344444443333322211 1111 0 000 01111 1123
Q ss_pred cccCCCchhHHHHHHHhhhcCCCCCCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHh
Q 003716 600 VSMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 679 (800)
Q Consensus 600 ~~~~~~dv~~E~~~v~~~~~~~~~~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~Lt 679 (800)
.++|+.||.+|++++++........+.+.+++|+|.|++++ + |++++|+.|++|||+||+|+|||||||++|||+
T Consensus 538 ~~~e~~~v~~e~~~v~~~~~~~~~~~~~~~~~L~k~y~~~~----~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mlt 612 (885)
T KOG0059|consen 538 VEVEKLDVARERNRVETLLFRSSYSSALVLNNLSKVYGGKD----G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLT 612 (885)
T ss_pred cchhhHHHHHHHHhhhhhhhcccccceEEEcceeeeecchh----h-hhcceEEEecCCceEEEecCCCCCchhhHHHHh
Confidence 45688899999988887666555668999999999998642 2 999999999999999999999999999999999
Q ss_pred CCCCCCcceEEECCeecCc--cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCc
Q 003716 680 GITRTTSGTAYVQGLDIRT--DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 757 (800)
Q Consensus 680 Gl~~ptsG~I~i~G~~i~~--~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~ 757 (800)
|+.+||+|+++++|+++.. +.+++++.||||||+|++|+.||+||||.+|+++||++++++++.++++++.++|. +
T Consensus 613 G~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~--~ 690 (885)
T KOG0059|consen 613 GETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLG--P 690 (885)
T ss_pred CCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCh--h
Confidence 9999999999999999976 45568999999999999999999999999999999999999999999999999998 5
Q ss_pred cccccCCCCChhHHHHHHHHHHHcCCCcEEEEc--------cCCcccccC
Q 003716 758 VADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL--------SSNRFFSDY 799 (800)
Q Consensus 758 ~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD--------~~~~~~~~~ 799 (800)
++|++++.|||||||||++|+|++|+|++++|| .+.|++||-
T Consensus 691 ~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~i 740 (885)
T KOG0059|consen 691 YANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDI 740 (885)
T ss_pred hhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999 889999983
No 2
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.1e-65 Score=646.62 Aligned_cols=469 Identities=26% Similarity=0.399 Sum_probs=355.6
Q ss_pred ceeEEEEEccccCCCCCCCccccchhhhHHHHHHHHHHhhhcCCC-----ceeeeeeeecCCCcchhhh-hh----hHhH
Q 003716 281 KFNVNIWYNSTYKNDTGNVPIGLLRVPRSINLASNAYLRSLLGPG-----TQILFDFVKEMPKTDSKLK-LD----VSSI 350 (800)
Q Consensus 281 ~~~v~i~yN~t~~~~~~~~~~~~~~~p~~lN~v~naiLr~~~g~~-----~~i~~~~~~~~P~~~~~~~-~d----~~s~ 350 (800)
+.++++|||++ ++ |+.|.++|+++||++|...|++ ..++ ++++|+|....... .. ....
T Consensus 1612 ~~~~~vwfNn~-----~~-----Hs~p~~lN~l~NaiLr~~~~~~~~~~~~~I~-v~N~Plp~t~~~~~~~~~~~~~~~~ 1680 (2272)
T TIGR01257 1612 EDNIKVWFNNK-----GW-----HALVSFLNVAHNAILRASLPKDRDPEEYGIT-VISQPLNLTKEQLSEITVLTTSVDA 1680 (2272)
T ss_pred CcceEEEEcCC-----cc-----cHHHHHHHHHHHHHHHHhcccccCCccceEE-EEecCCCCchhhhhhhhhcccchhH
Confidence 34689999994 44 4578999999999999876432 3444 47899997643211 11 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeec-cch
Q 003716 351 IGTLFFTWVVLQLFPVILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTL-NSY 429 (800)
Q Consensus 351 ~~~lf~~~~i~~lfp~~v~~iV~EKe~klK~~m~m~Gl~~~~YWl~~~~~~l~~~~i~li~~ii~~~~~~~~~f~~-~~~ 429 (800)
+-.+++++.+.++.+.++.++|+||++|+||+|.++|++..+||+++|+|+++.+++.++++++.-.+++...|.. .++
T Consensus 1681 ~iai~ii~~~sfi~asfv~~~V~ER~skaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~~~~~l 1760 (2272)
T TIGR01257 1681 VVAICVIFAMSFVPASFVLYLIQERVNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENL 1760 (2272)
T ss_pred HHHHHHHHHHHHHHHHHheeeehHHhhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhcCcchH
Confidence 2233444444455566789999999999999999999999999999999999888877666555444555555554 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHhHHHH---HHHHHHhhcCCCC---chhhhhhhcccchHH
Q 003716 430 GIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLG---AFLLQSFVEDPSF---PRRWITAMELYPGFA 503 (800)
Q Consensus 430 ~~~fll~~lyg~s~I~~ayllS~fFs~~~tA~v~~~i~~~~~~ll~---~~l~~~~~~~~~~---~~~~~~~l~l~P~~~ 503 (800)
..+++++++||+|.||++|++|++|+++.+|++...++.++.|++. .+++..+..+... ......++.++|.||
T Consensus 1761 ~~~~lll~lyG~a~ip~tYl~SflF~~~~~A~~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~ 1840 (2272)
T TIGR01257 1761 PALVALLMLYGWAVIPMMYPASFLFDVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFC 1840 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCchhh
Confidence 6788899999999999999999999999999987666555555432 2333322111111 112233456899999
Q ss_pred HHHHHHHHHhhhhc-------cccCCCCCCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc
Q 003716 504 LYRGLYEFGTYSFR-------GHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQ 576 (800)
Q Consensus 504 l~~gl~~l~~~~~~-------~~~~~~~g~~w~~l~~~~~gi~~~li~m~i~~ilyllL~~yld~v~~~~~gk~p~ffl~ 576 (800)
+++|+++++..... +.....+.+.|+. ++..+++|++++++|+++++++|+-.. .+
T Consensus 1841 lg~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~ll~m~~~~iv~flLl~~ie~~~~----------~~ 1903 (2272)
T TIGR01257 1841 LGRGLIDLALSQAVTDVYAQFGEEHSANPFQWDL-------IGKNLVAMAVEGVVYFLLTLLIQHHFF----------LS 1903 (2272)
T ss_pred hHHHHHHHHHhHHHHHHHHhhcccccCCccchhh-------ccHHHHHHHHHHHHHHHHHHHHHhhhh----------hh
Confidence 99999998764321 1111112334432 346789999999999999999996321 00
Q ss_pred cccccccCCCCCCCCCCCCcccccccCCCchhHHHHHHHhhhcCCCCCCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEc
Q 003716 577 NFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALP 656 (800)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~E~~~v~~~~~~~~~~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~ 656 (800)
.+.+. + . . .....||+||.+||++|.+. .....+|+++||+|.|+++ ++.||+|+||+|+
T Consensus 1904 ~~~~~-~----~-----~---~~~~~eD~DV~~Er~rV~~~---~~~~~~L~v~nLsK~Y~~~----~~~aL~~ISf~I~ 1963 (2272)
T TIGR01257 1904 RWIAE-P----A-----K---EPIFDEDDDVAEERQRIISG---GNKTDILRLNELTKVYSGT----SSPAVDRLCVGVR 1963 (2272)
T ss_pred hhccc-c----C-----c---CcCCCchhHHHHHHHHHhcc---CCCCceEEEEEEEEEECCC----CceEEEeeEEEEc
Confidence 00000 0 0 0 01134789999999999653 2234689999999999741 3579999999999
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC
Q 003716 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK 736 (800)
Q Consensus 657 ~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~ 736 (800)
+|||+||+||||||||||+|||+|+++|++|+|+++|+++.++..++++.||||||++.+++.+|++|||.++++++|.+
T Consensus 1964 ~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~ 2043 (2272)
T TIGR01257 1964 PGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVP 2043 (2272)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999997666667889999999999999999999999999999988
Q ss_pred chhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc--------cCCcccccC
Q 003716 737 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL--------SSNRFFSDY 799 (800)
Q Consensus 737 ~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD--------~~~~~~~~~ 799 (800)
+++.++.++++++.++|. +++|+++++|||||||||++|+||+++|+|+||| .++|.+|+.
T Consensus 2044 ~~~~~~~v~~lLe~lgL~--~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~l 2112 (2272)
T TIGR01257 2044 AEEIEKVANWSIQSLGLS--LYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNT 2112 (2272)
T ss_pred HHHHHHHHHHHHHHcCCH--HHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 777778899999999997 4899999999999999999999999999999999 788888874
No 3
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=5e-65 Score=644.64 Aligned_cols=515 Identities=23% Similarity=0.338 Sum_probs=378.9
Q ss_pred cceeeEEEeeccC------CCceeEEEEEccccCCC------CCCC---------cccc--chhhhHHHHHHHHHHhhhc
Q 003716 266 NEILAAYDFLNSD------LEKFNVNIWYNSTYKND------TGNV---------PIGL--LRVPRSINLASNAYLRSLL 322 (800)
Q Consensus 266 ~~~~~a~~f~~~~------~~~~~v~i~yN~t~~~~------~~~~---------~~~~--~~~p~~lN~v~naiLr~~~ 322 (800)
+.+.+|..|.+.. ..+++|+|.+|.+...+ ..|+ .+.| .++-.++++++++|++...
T Consensus 545 ~~~~agI~F~~~~~~~~~~p~~v~y~IR~~~~~~~~t~~~~~~~w~~g~~~~~~~~~~Y~~~GFl~lQ~ai~~aii~~~~ 624 (2272)
T TIGR01257 545 NRFWAGVVFPDMYPWTSSLPPHVKYKIRMDIDVVEKTNKIKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVEQGITRSQM 624 (2272)
T ss_pred CCeEEEEEeCCCcccccCCCCceEEEEecCccccCcchhhccccccCCCCCCccccccHHHhhHHHHHHHHHHHHHHhhc
Confidence 4578888885431 35688999999874211 1111 0112 2555789999999999876
Q ss_pred CCCceeeeeeeecCCCcchhhh--hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHhCCCchHHHHHHHHH
Q 003716 323 GPGTQILFDFVKEMPKTDSKLK--LDVSSIIGTLFFTWVVLQLFPVILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAY 400 (800)
Q Consensus 323 g~~~~i~~~~~~~~P~~~~~~~--~d~~s~~~~lf~~~~i~~lfp~~v~~iV~EKe~klK~~m~m~Gl~~~~YWl~~~~~ 400 (800)
+.. ....++.++||+|++... ......+.++|+++.+++....++..+|.|||.|+||.|+||||++++||++||+.
T Consensus 625 ~~~-~~~~v~~q~~P~P~y~~d~~l~~~~~~~pl~~~la~~~~~~~lv~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~ 703 (2272)
T TIGR01257 625 QAE-PPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLD 703 (2272)
T ss_pred CCC-cccceeeeeCCCCCeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 532 233457899999987432 12223345666666655555557889999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHhhcceeeeccchHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHhHHHHHHHHH
Q 003716 401 FFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQ 480 (800)
Q Consensus 401 ~l~~~~i~li~~ii~~~~~~~~~f~~~~~~~~fll~~lyg~s~I~~ayllS~fFs~~~tA~v~~~i~~~~~~ll~~~l~~ 480 (800)
.+++.++.+++++++ +....+|..+++.++|+++++|+.+.|.++|++|+||+++++|..++.+++|++.++..+...
T Consensus 704 ~~~~~~i~~~l~~~i--l~~~~~~~~s~~~~lfl~~~~y~~s~I~~~fliS~fFska~~A~~~~~li~f~~~lp~~~~~~ 781 (2272)
T TIGR01257 704 SFSIMSMSIFLLTIF--IMHGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFA 781 (2272)
T ss_pred HHHHHHHHHHHHHHH--HhhCceeecCChHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 765544433332222 223467899999999999999999999999999999999999999998888776543322111
Q ss_pred HhhcCCCCchhhhhhhcccchHHHHHHHHHHHhhhhccccCCCCCCccccCCC-----CCcchHHHHHHHHHHHHHHHHH
Q 003716 481 SFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSD-----SENGMKEVLIIMFVEWLLLLGI 555 (800)
Q Consensus 481 ~~~~~~~~~~~~~~~l~l~P~~~l~~gl~~l~~~~~~~~~~~~~g~~w~~l~~-----~~~gi~~~li~m~i~~ilyllL 555 (800)
+.... +......++++|+.+++.|+..+..++..+. |++|+++.. +...++..++||++++++|++|
T Consensus 782 -~~~~~--~~~~~~~~sL~sp~af~~g~~~i~~~e~~~~-----G~~w~n~~~~~~~~d~~s~~~~~~ml~~d~~lY~lL 853 (2272)
T TIGR01257 782 -WQDRM--TADLKTAVSLLSPVAFGFGTEYLVRFEEQGL-----GLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLL 853 (2272)
T ss_pred -ccccc--CHHHHHHHHhcCHHHHHHHHHHHHHHhhhCC-----CcccccccccccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 11112 2223345679999999999999988876543 789998753 3345788999999999999999
Q ss_pred HHHHHhhcCCCCC-CCccccccc--ccccccCCCCCCCCCCCCccc-ccccCCCchhH-H-HHHHHhhhcCCCCCCcEEE
Q 003716 556 AYYVDKILSSGGA-KGPLYFLQN--FKKKSRSSFRKPSLGRQDSKV-FVSMEKPDVTQ-E-RERVEQLLLEPGTSHAIIS 629 (800)
Q Consensus 556 ~~yld~v~~~~~g-k~p~ffl~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dv~~-E-~~~v~~~~~~~~~~~~i~i 629 (800)
+||+|+|+|+++| ++||||+.. ++........+.......... ..+.++++..+ . .+..++ ........|++
T Consensus 854 ~~Yld~V~PgeyG~~kpw~F~~~~syW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~--~~~~~~~~L~I 931 (2272)
T TIGR01257 854 AWYLDQVFPGDYGTPLPWYFLLQESYWLGGEGCSTREERALEKTEPLTEEMEDPEHPEGINDSFFER--ELPGLVPGVCV 931 (2272)
T ss_pred HHHHhhcCcCCCCCCCCcccccchhhhcCCccccccccccccccccccccccccccccccccccccc--ccCCCCceEEE
Confidence 9999999999999 778887631 221100000000000000000 00111111000 0 000111 11123457999
Q ss_pred EeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEE
Q 003716 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV 709 (800)
Q Consensus 630 ~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGy 709 (800)
+||+|.|++. ++.||+|+||++++||++||+||||||||||+|+|+|+++|++|+|+++|+++..+..++|+.+||
T Consensus 932 ~nLsK~y~~~----~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~ 1007 (2272)
T TIGR01257 932 KNLVKIFEPS----GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGM 1007 (2272)
T ss_pred EeEEEEecCC----CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEE
Confidence 9999999631 367999999999999999999999999999999999999999999999999997777778889999
Q ss_pred ecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEE
Q 003716 710 CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLS 789 (800)
Q Consensus 710 cpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLL 789 (800)
|||++.+++.+||+||+.++++++|.+.++.+++++++++.+||. +++|+++++|||||||||+||+||+++|+|+||
T Consensus 1008 ~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~--~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLL 1085 (2272)
T TIGR01257 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH--HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVL 1085 (2272)
T ss_pred EecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999998887777778899999999997 478999999999999999999999999999999
Q ss_pred c--------cCCcccccC
Q 003716 790 L--------SSNRFFSDY 799 (800)
Q Consensus 790 D--------~~~~~~~~~ 799 (800)
| .+.|-+||.
T Consensus 1086 DEPTSGLDp~sr~~l~~l 1103 (2272)
T TIGR01257 1086 DEPTSGVDPYSRRSIWDL 1103 (2272)
T ss_pred ECCCcCCCHHHHHHHHHH
Confidence 9 666777663
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-38 Score=320.68 Aligned_cols=159 Identities=30% Similarity=0.407 Sum_probs=152.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
+|+++|++|.|++ +.||+|+||+|++||+++++||+||||||++|||.++++||+|+|+|+|+++.+ +..+.|
T Consensus 1 MI~~~nvsk~y~~------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LR 74 (309)
T COG1125 1 MIEFENVSKRYGN------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELR 74 (309)
T ss_pred CceeeeeehhcCC------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHH
Confidence 5789999999974 679999999999999999999999999999999999999999999999999976 567899
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
++|||+-|...|||++||.||+.+.-.++|.++++++++++++|+.+||.+.+++++++++|||||+||+.+||||+.+|
T Consensus 75 r~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 75 RKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred HhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999998656999999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+|+|||
T Consensus 155 ~ilLMD 160 (309)
T COG1125 155 PILLMD 160 (309)
T ss_pred CeEeec
Confidence 999999
No 5
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-37 Score=310.30 Aligned_cols=157 Identities=30% Similarity=0.442 Sum_probs=147.7
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc--cHHHh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRI 703 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~--~~~~~ 703 (800)
+|+++||+|.|++ ..+|+|||++|++||+++|+||+|||||||+|+|.|+++|++|+|.++|.++.. +..++
T Consensus 2 mi~i~~l~K~fg~------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~ 75 (240)
T COG1126 2 MIEIKNLSKSFGD------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL 75 (240)
T ss_pred eEEEEeeeEEeCC------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHH
Confidence 6899999999974 689999999999999999999999999999999999999999999999988753 56788
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~-~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
|+++|+|||+..|||++||.||+.+.. ..++.++++.++.+.++|+++||. +++|.++.+||||||||++|||||+.
T Consensus 76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~--~ka~~yP~qLSGGQqQRVAIARALaM 153 (240)
T COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA--DKADAYPAQLSGGQQQRVAIARALAM 153 (240)
T ss_pred HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCch--hhhhhCccccCcHHHHHHHHHHHHcC
Confidence 999999999999999999999998753 568899999999999999999998 48999999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|+|
T Consensus 154 ~P~vmLFD 161 (240)
T COG1126 154 DPKVMLFD 161 (240)
T ss_pred CCCEEeec
Confidence 99999999
No 6
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=310.01 Aligned_cols=158 Identities=30% Similarity=0.495 Sum_probs=152.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
++++.+|+|+|+. ...|++||||++++||++||+|+|||||||++|||++++.|++|.|+++|.|...+...+|+
T Consensus 1 Ml~v~~l~K~y~~-----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr 75 (245)
T COG4555 1 MLEVTDLTKSYGS-----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRR 75 (245)
T ss_pred CeeeeehhhhccC-----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhh
Confidence 5789999999985 34599999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
+||+.+....+|..||++|||.|++++.|+.+.+++.+++++.+.++|. +++|+++++||.||||||+|||||+++|+
T Consensus 76 ~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~--~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 76 KIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLL--EYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred hcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChH--HHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 9999998899999999999999999999999999999999999999997 59999999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 154 i~vlD 158 (245)
T COG4555 154 ILVLD 158 (245)
T ss_pred eEEEc
Confidence 99999
No 7
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.9e-37 Score=321.11 Aligned_cols=162 Identities=31% Similarity=0.485 Sum_probs=151.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc----cHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DMD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~----~~~ 701 (800)
+|++++++|.|+.. +++...||+||||+|++||++|++|++|||||||+|++.++.+|++|+|.++|+++.. ...
T Consensus 1 mI~l~~vsK~~~~~-~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 1 MIELENVSKTFGQT-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred CeEEEeeeeeeccC-CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHH
Confidence 58899999999864 3345789999999999999999999999999999999999999999999999999864 456
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
+.|++||++|||..|+...||.||+.|...+.|.+++++++++.++|+.+||. +++++++.+|||||||||+|||||+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~--dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS--DKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh--hhhccCchhcCcchhhHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999999998 5899999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+|+|.|
T Consensus 158 ~~P~iLL~D 166 (339)
T COG1135 158 NNPKILLCD 166 (339)
T ss_pred cCCCEEEec
Confidence 999999999
No 8
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-36 Score=328.43 Aligned_cols=157 Identities=26% Similarity=0.434 Sum_probs=147.7
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..|+++||+|.|++ ..||+++||+|++||+++|+||||||||||||||+|+++||+|+|+|+|.++.. ....+
T Consensus 2 ~~i~l~~v~K~yg~------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~-l~P~~ 74 (338)
T COG3839 2 AELELKNVRKSFGS------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD-LPPEK 74 (338)
T ss_pred cEEEEeeeEEEcCC------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC-CChhH
Confidence 36899999999974 229999999999999999999999999999999999999999999999999975 23345
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
|.||+|||+.+|||+|||+||+.|..++++.++++++++|++.++.++|.+ ++|+++.+|||||||||++||||+.+|
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~--lL~r~P~~LSGGQrQRVAlaRAlVr~P 152 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH--LLNRKPLQLSGGQRQRVALARALVRKP 152 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh--HHhcCcccCChhhHHHHHHHHHHhcCC
Confidence 889999999999999999999999999999999999999999999999984 999999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+++|||
T Consensus 153 ~v~L~D 158 (338)
T COG3839 153 KVFLLD 158 (338)
T ss_pred CEEEec
Confidence 999999
No 9
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5e-36 Score=323.70 Aligned_cols=159 Identities=39% Similarity=0.645 Sum_probs=148.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..+.++||+|.|++ .+.||+||||+|++||++||+||||||||||+|||+|+++|++|+|.++|+++..+..+++
T Consensus 3 ~~i~~~~l~k~~~~-----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~ 77 (293)
T COG1131 3 EVIEVRNLTKKYGG-----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVR 77 (293)
T ss_pred ceeeecceEEEeCC-----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHH
Confidence 35788999999973 2679999999999999999999999999999999999999999999999999987777889
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
++|||+||++.+++.||++|+|.|++++++.+....+++++++++.++|.+ ..++++++||+||||||+||+||+++|
T Consensus 78 ~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~lS~G~kqrl~ia~aL~~~P 155 (293)
T COG1131 78 RRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED--KANKKVRTLSGGMKQRLSIALALLHDP 155 (293)
T ss_pred hheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch--hhCcchhhcCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999998876666789999999999974 568999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+++|||
T Consensus 156 ~lliLD 161 (293)
T COG1131 156 ELLILD 161 (293)
T ss_pred CEEEEC
Confidence 999999
No 10
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-36 Score=327.57 Aligned_cols=157 Identities=32% Similarity=0.488 Sum_probs=145.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..++++||+|.|++ ..||+|+||+|++||+++|||||||||||+||||+|++.|++|+|.++|+++..- ...+
T Consensus 4 ~~l~i~~v~k~yg~------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~l-pp~k 76 (352)
T COG3842 4 PALEIRNVSKSFGD------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDV-PPEK 76 (352)
T ss_pred ceEEEEeeeeecCC------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-Chhh
Confidence 57999999999973 6899999999999999999999999999999999999999999999999999763 3346
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg-~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
|.||+|||+.+|||+|||+||+.|..++++ .++++++++++++|+.++|. ++.++++.+|||||||||++||||+.+
T Consensus 77 R~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~--~~~~R~p~qLSGGQqQRVALARAL~~~ 154 (352)
T COG3842 77 RPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE--GFADRKPHQLSGGQQQRVALARALVPE 154 (352)
T ss_pred cccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch--hhhhhChhhhChHHHHHHHHHHHhhcC
Confidence 889999999999999999999999887554 45567889999999999997 599999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|+|+|||
T Consensus 155 P~vLLLD 161 (352)
T COG3842 155 PKVLLLD 161 (352)
T ss_pred cchhhhc
Confidence 9999999
No 11
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-35 Score=307.58 Aligned_cols=154 Identities=27% Similarity=0.428 Sum_probs=144.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..+.+++++|.|++ ..||+|+||+|++||+++|+||+|||||||+|+|+|+++|++|+|.++|..+.. -.
T Consensus 2 ~~l~i~~v~~~f~~------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~----p~ 71 (248)
T COG1116 2 ALLEIEGVSKSFGG------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG----PG 71 (248)
T ss_pred ceEEEEeeEEEeCc------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC----CC
Confidence 36889999999974 679999999999999999999999999999999999999999999999998832 24
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
..+||+||++.|+|.+||+||+.+...++|.++++.+++++++|+.+||. ++.|+++++||||||||++|||||+.+|
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~--~~~~~~P~qLSGGMrQRVaiARAL~~~P 149 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA--GFEDKYPHQLSGGMRQRVAIARALATRP 149 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc--chhhcCccccChHHHHHHHHHHHHhcCC
Confidence 67999999999999999999999988888888888888999999999997 5899999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+|+|||
T Consensus 150 ~lLLlD 155 (248)
T COG1116 150 KLLLLD 155 (248)
T ss_pred CEEEEc
Confidence 999999
No 12
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=3.3e-35 Score=319.29 Aligned_cols=167 Identities=37% Similarity=0.569 Sum_probs=152.0
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
..+++++||+|.|++ +.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.....+.
T Consensus 5 ~~~i~i~~l~k~~~~------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 5 VAPIDFRNVEKRYGD------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHA 78 (306)
T ss_pred CceEEEEeEEEEECC------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHH
Confidence 457999999999963 57999999999999999999999999999999999999999999999999997666667
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
+++|||+||++.+++.+|++||+.+++++++.+..+..++++++++.++|. +..++++++||||||||++||+||+++
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE--NKADAKVGELSGGMKRRLTLARALVND 156 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hHhcCchhhCCHHHHHHHHHHHHHhCC
Confidence 889999999999999999999999999888877667777899999999997 478999999999999999999999999
Q ss_pred CcEEEEc--------cCCccccc
Q 003716 784 PKVRLSL--------SSNRFFSD 798 (800)
Q Consensus 784 P~vlLLD--------~~~~~~~~ 798 (800)
|++++|| .+.+-+|+
T Consensus 157 P~lllLDEPt~gLD~~~~~~l~~ 179 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQARHLMWE 179 (306)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHH
Confidence 9999999 55555554
No 13
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.6e-36 Score=298.54 Aligned_cols=158 Identities=32% Similarity=0.507 Sum_probs=142.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~ 702 (800)
..+.++||.|+|++ +.+|+++||+|++||++||+|||||||||+|.|++|+.+|++|+|.++|.||+.. ..+
T Consensus 3 ~~L~a~~l~K~y~k------r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~R 76 (243)
T COG1137 3 STLVAENLAKSYKK------RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR 76 (243)
T ss_pred cEEEehhhhHhhCC------eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHH
Confidence 35889999999974 5799999999999999999999999999999999999999999999999999763 245
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCch--hHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP--ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~--~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
.|..|||.||++.+|..|||+||+.....++....+ +.+.+++++|+.+++.| .+++++.+||||||||+.|||||
T Consensus 77 ArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~h--lr~~~a~sLSGGERRR~EIARaL 154 (243)
T COG1137 77 ARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH--LRDSKAYSLSGGERRRVEIARAL 154 (243)
T ss_pred hhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHH--HhcCcccccccchHHHHHHHHHH
Confidence 677899999999999999999999987777653333 44556889999999985 89999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+.+|+.+|||
T Consensus 155 a~~P~fiLLD 164 (243)
T COG1137 155 AANPKFILLD 164 (243)
T ss_pred hcCCCEEEec
Confidence 9999999999
No 14
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.8e-35 Score=289.42 Aligned_cols=158 Identities=30% Similarity=0.448 Sum_probs=149.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc----cHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DMD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~----~~~ 701 (800)
+|+++|++|.|++ .+.||+||||+|++||..-|+||+||||||++|+|.+.++||+|+|.++|+|+.. +..
T Consensus 1 mI~f~~V~k~Y~~-----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP 75 (223)
T COG2884 1 MIRFENVSKAYPG-----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75 (223)
T ss_pred CeeehhhhhhcCC-----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccc
Confidence 5789999999985 2679999999999999999999999999999999999999999999999999964 445
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
..|++||+++|+.-|.+++||.||+.|..++.|.+++++++++.+.|+.+||.+ .++..+.+||||||||++||||++
T Consensus 76 ~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~--k~~~lP~~LSGGEQQRvaIARAiV 153 (223)
T COG2884 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH--KARALPSQLSGGEQQRVAIARAIV 153 (223)
T ss_pred hhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccch--hhhcCccccCchHHHHHHHHHHHc
Confidence 678999999999999999999999999999999999999999999999999984 789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|.|
T Consensus 154 ~~P~vLlAD 162 (223)
T COG2884 154 NQPAVLLAD 162 (223)
T ss_pred cCCCeEeec
Confidence 999999999
No 15
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.3e-34 Score=295.50 Aligned_cols=161 Identities=27% Similarity=0.414 Sum_probs=142.6
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HHH
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 702 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~~ 702 (800)
++++||+|.|+.... ...||+++||+|++||+++|+||+||||||||++|.|+.+||+|.|+++|+++... ..+
T Consensus 2 i~~~~v~k~y~~~~~--~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 2 IELKNVSKIYGLGGE--KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred cEEeeeEEEeccCCc--ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHH
Confidence 678999999975322 36899999999999999999999999999999999999999999999999999642 233
Q ss_pred h-hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 I-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~-r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
. +++|||++|+..|.+++|++||+.+...+.+.+..+.+++++++++.+||.+ ...++++.+|||||||||+|||||+
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~-~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLED-RLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChh-hhccCCchhcCHHHHHHHHHHHHHh
Confidence 3 4679999999999999999999999877877766567888999999999974 3444899999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|++||.|
T Consensus 159 ~~P~iilAD 167 (226)
T COG1136 159 NNPKIILAD 167 (226)
T ss_pred cCCCeEEee
Confidence 999999999
No 16
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=7.5e-34 Score=312.67 Aligned_cols=159 Identities=38% Similarity=0.579 Sum_probs=145.9
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
..+|+++||+|.|++ +.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.......
T Consensus 39 ~~~i~i~nl~k~y~~------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~ 112 (340)
T PRK13536 39 TVAIDLAGVSKSYGD------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLA 112 (340)
T ss_pred ceeEEEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHH
Confidence 347999999999963 57999999999999999999999999999999999999999999999999997655667
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
++.|||+||++.+++.+|++||+.+++.+++....+..+.++++++.++|. +..++++++||||||||++||+||+++
T Consensus 113 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~--~~~~~~~~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE--SKADARVSDLSGGMKRRLTLARALIND 190 (340)
T ss_pred hccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 889999999999999999999999988877766556667788999999997 478999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|+++|||
T Consensus 191 P~lLiLD 197 (340)
T PRK13536 191 PQLLILD 197 (340)
T ss_pred CCEEEEE
Confidence 9999999
No 17
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.6e-34 Score=290.92 Aligned_cols=160 Identities=28% Similarity=0.456 Sum_probs=147.1
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc----c
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----D 699 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~----~ 699 (800)
.+.|++++|+|.|++ +.+++||+|+|++||++|++||+|+|||||+|.|.|+++|++|+|+++|+++.. +
T Consensus 6 ~~~I~vr~v~~~fG~------~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~ 79 (263)
T COG1127 6 EPLIEVRGVTKSFGD------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79 (263)
T ss_pred cceEEEeeeeeecCC------EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHH
Confidence 467999999999974 689999999999999999999999999999999999999999999999999864 3
Q ss_pred HHHhhcceEEecCCCCCCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 700 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 700 ~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~l-kg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
..++|+++|+++|+.+||..|||+||+.|..+- ..++++.+++.+..-|+.+||.. ...++.+.+|||||+||+++||
T Consensus 80 ~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~-~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 80 LYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRG-AAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCCh-hhhhhCchhhcchHHHHHHHHH
Confidence 446789999999999999999999999986543 46788899999999999999974 4589999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
|++.||+++++|
T Consensus 159 AialdPell~~D 170 (263)
T COG1127 159 AIALDPELLFLD 170 (263)
T ss_pred HHhcCCCEEEec
Confidence 999999999999
No 18
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.2e-33 Score=306.17 Aligned_cols=157 Identities=32% Similarity=0.495 Sum_probs=145.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
.++++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.....++++
T Consensus 2 ~l~~~~l~~~~~~------~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~ 75 (301)
T TIGR03522 2 SIRVSSLTKLYGT------QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQR 75 (301)
T ss_pred EEEEEEEEEEECC------EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHh
Confidence 4789999999963 5799999999999999999999999999999999999999999999999998765556788
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.+||+||++.+++.+|++||+.+++.+++.+.++..++++++++.++|. +..++++++||||||||+++|+||+++|+
T Consensus 76 ~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (301)
T TIGR03522 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR--PEQHKKIGQLSKGYRQRVGLAQALIHDPK 153 (301)
T ss_pred ceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc--hHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999988888776666677899999999997 47899999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 154 lliLD 158 (301)
T TIGR03522 154 VLILD 158 (301)
T ss_pred EEEEc
Confidence 99999
No 19
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.7e-34 Score=290.98 Aligned_cols=154 Identities=27% Similarity=0.495 Sum_probs=147.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
++++++|+|+|++ +.||+|+||+|++||++|+||+|||||||+||||.|+++||+|+|.++|.++.. .++.
T Consensus 2 ~L~ie~vtK~Fg~------k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~---~~~~ 72 (300)
T COG4152 2 ALEIEGVTKSFGD------KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ---EIKN 72 (300)
T ss_pred ceEEecchhccCc------eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh---hhhh
Confidence 6899999999974 789999999999999999999999999999999999999999999999999864 4567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
+|||.|.+-.|++.+||.|.|.|+|+++|++.++++++++.+|+++++. ++..+++.+||.||+||+.+..|++++|+
T Consensus 73 rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~--~~~~~kIk~LSKGnqQKIQfisaviHePe 150 (300)
T COG4152 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV--GKKTKKIKELSKGNQQKIQFISAVIHEPE 150 (300)
T ss_pred hcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccc--ccccchHHHhhhhhhHHHHHHHHHhcCCC
Confidence 8999999999999999999999999999999999999999999999997 58999999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 151 LlILD 155 (300)
T COG4152 151 LLILD 155 (300)
T ss_pred EEEec
Confidence 99999
No 20
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=7e-33 Score=305.00 Aligned_cols=161 Identities=30% Similarity=0.401 Sum_probs=144.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~ 701 (800)
+|+++||+|.|++.+ ..+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... ..
T Consensus 1 mI~~~~lsk~y~~~~--~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~ 78 (343)
T TIGR02314 1 MIKLSNITKVFHQGT--KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELT 78 (343)
T ss_pred CEEEEEEEEEECCCC--cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 478999999996421 135799999999999999999999999999999999999999999999999998642 23
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
..|++|||+||+..+++.+|++||+.+.....+.++++.++++.++++.+||. +..|+++.+||||||||++|||||+
T Consensus 79 ~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~--~~~~~~~~~LSgGqkQRV~IARAL~ 156 (343)
T TIGR02314 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG--DKHDSYPSNLSGGQKQRVAIARALA 156 (343)
T ss_pred HHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHH
Confidence 45788999999999999999999999876666777777788899999999997 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 157 ~~P~iLLlD 165 (343)
T TIGR02314 157 SNPKVLLCD 165 (343)
T ss_pred hCCCEEEEe
Confidence 999999999
No 21
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-33 Score=290.87 Aligned_cols=155 Identities=28% Similarity=0.453 Sum_probs=133.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..|+++||++.|++ .+||+||||+|++||+++|+||||||||||+|+|.|+++|++|+|.+.|+++..... +
T Consensus 3 ~~i~v~nl~v~y~~------~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~--~ 74 (254)
T COG1121 3 PMIEVENLTVSYGN------RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK--R 74 (254)
T ss_pred cEEEEeeeEEEECC------EeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc--C
Confidence 46899999999974 269999999999999999999999999999999999999999999999998764322 4
Q ss_pred cceEEecCCC---CCCCCCCHHHHHHHHh--hhc--CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHH
Q 003716 705 TSMGVCPQED---LLWETLTGREHLLFYG--RLK--NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 705 ~~IGycpQ~~---~L~~~LTv~E~L~~~~--~lk--g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA 777 (800)
.+|||+||.. .-|| +||+|-+.+.. +.. +...++.+++++++|+++|+. +++|+++++|||||+||+.||
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~--~~~~r~i~~LSGGQ~QRV~lA 151 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME--DLRDRQIGELSGGQKQRVLLA 151 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch--hhhCCcccccCcHHHHHHHHH
Confidence 6799999964 3344 69999998742 211 122344578999999999998 599999999999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
|||+.+|++++||
T Consensus 152 RAL~~~p~lllLD 164 (254)
T COG1121 152 RALAQNPDLLLLD 164 (254)
T ss_pred HHhccCCCEEEec
Confidence 9999999999999
No 22
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.5e-33 Score=293.07 Aligned_cols=157 Identities=29% Similarity=0.399 Sum_probs=140.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
+++++||+..|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|.+|+|+++|+++.+ ...++.
T Consensus 2 ~L~~~~ls~~y~~------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 2 MLEVENLSFGYGG------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred eeEEEEEEEEECC------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence 5889999999974 689999999999999999999999999999999999999999999999999976 556677
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhh----cCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRL----KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~l----kg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
+.+||+||.....+.+||+|-+.+...- .+...++.++.++++|+.+|+. +++++.+.+||||||||+.|||||
T Consensus 76 k~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~--~la~r~~~~LSGGerQrv~iArAL 153 (258)
T COG1120 76 KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE--HLADRPVDELSGGERQRVLIARAL 153 (258)
T ss_pred hhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH--HHhcCcccccChhHHHHHHHHHHH
Confidence 8999999999888899999988874221 1223455566899999999997 499999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+++|+|+|||
T Consensus 154 aQ~~~iLLLD 163 (258)
T COG1120 154 AQETPILLLD 163 (258)
T ss_pred hcCCCEEEeC
Confidence 9999999999
No 23
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-33 Score=305.06 Aligned_cols=157 Identities=25% Similarity=0.432 Sum_probs=144.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+|+++||+|.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...+
T Consensus 5 ~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~-~~~~ 77 (351)
T PRK11432 5 NFVVLKNITKRFGS------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHR-SIQQ 77 (351)
T ss_pred cEEEEEeEEEEECC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC-CHHH
Confidence 47999999999963 5699999999999999999999999999999999999999999999999998643 2345
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
+.|||+||+..+|+++|++||+.|..+.++.++++.+++++++++.++|. ++.++++.+|||||||||+|||||+.+|
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~--~~~~r~~~~LSgGq~QRVaLARaL~~~P 155 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA--GFEDRYVDQISGGQQQRVALARALILKP 155 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 78999999999999999999999887777777777888999999999997 4889999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+++|||
T Consensus 156 ~lLLLD 161 (351)
T PRK11432 156 KVLLFD 161 (351)
T ss_pred CEEEEc
Confidence 999999
No 24
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-33 Score=283.94 Aligned_cols=159 Identities=28% Similarity=0.457 Sum_probs=143.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc----cH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DM 700 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~----~~ 700 (800)
.+|+++||+|+|++ .+.||++|||+|++||+++|+|++|||||||||+|.|+.+|++|+|.++|.++.. +.
T Consensus 2 ~~i~~~nl~k~yp~-----~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~l 76 (258)
T COG3638 2 MMIEVKNLSKTYPG-----GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76 (258)
T ss_pred ceEEEeeeeeecCC-----CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHH
Confidence 47899999999974 3789999999999999999999999999999999999999999999999999854 45
Q ss_pred HHhhcceEEecCCCCCCCCCCHHHHHHHHh--------hhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHH
Q 003716 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYG--------RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 772 (800)
Q Consensus 701 ~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~--------~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~Kr 772 (800)
.++|++|||++|+..|.+.++|.||+..+. .+-|+..++.+..+-++|+++|+. +++-+++++|||||+|
T Consensus 77 r~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~--~~A~qra~~LSGGQQQ 154 (258)
T COG3638 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL--DKAYQRASTLSGGQQQ 154 (258)
T ss_pred HHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH--HHHHHHhccCCcchhH
Confidence 677899999999999999999999998642 223556667778889999999997 4899999999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
||+|||||+.+|+|+|.|
T Consensus 155 RVaIARaL~Q~pkiILAD 172 (258)
T COG3638 155 RVAIARALVQQPKIILAD 172 (258)
T ss_pred HHHHHHHHhcCCCEEecC
Confidence 999999999999999999
No 25
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.2e-32 Score=304.45 Aligned_cols=157 Identities=30% Similarity=0.444 Sum_probs=144.0
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+|+++||+|.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..+
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~-~~~ 75 (353)
T TIGR03265 3 PYLSIDNIRKRFGA------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP-PQK 75 (353)
T ss_pred cEEEEEEEEEEeCC------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHH
Confidence 36899999999963 56999999999999999999999999999999999999999999999999986432 246
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
+.+||+||+..+|+++||+||+.|..+.++.++.+.+++++++++.++|. ++.++++.+|||||||||+|||||+.+|
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~--~~~~~~~~~LSgGq~QRvaLARaL~~~P 153 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP--GSERKYPGQLSGGQQQRVALARALATSP 153 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--chhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999999877766777777788999999999997 4899999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+++|||
T Consensus 154 ~llLLD 159 (353)
T TIGR03265 154 GLLLLD 159 (353)
T ss_pred CEEEEc
Confidence 999999
No 26
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.2e-32 Score=283.88 Aligned_cols=161 Identities=33% Similarity=0.554 Sum_probs=143.4
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+++++|++|.|+++. ....+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.......++
T Consensus 1 ~l~~~~v~~~~~~~~--~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 78 (218)
T cd03266 1 MITADALTKRFRDVK--KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARR 78 (218)
T ss_pred CeEEEEEEEecCCCC--ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHh
Confidence 378999999997521 112699999999999999999999999999999999999999999999999998755555678
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.+||+||++.+++.+|++||+.+....++....+..++++++++.+++. +..++++++||||||||+++|+||+.+|+
T Consensus 79 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (218)
T cd03266 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME--ELLDRRVGGFSTGMRQKVAIARALVHDPP 156 (218)
T ss_pred hEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999877666665566677899999999996 47899999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 157 illlD 161 (218)
T cd03266 157 VLLLD 161 (218)
T ss_pred EEEEc
Confidence 99999
No 27
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.4e-32 Score=298.26 Aligned_cols=158 Identities=37% Similarity=0.546 Sum_probs=143.0
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+|+++||+|.|++ +.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.......+
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 3 VAIDLVGVSKSYGD------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred cEEEEEeEEEEeCC------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHh
Confidence 46899999999963 569999999999999999999999999999999999999999999999999865545567
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
+.+||+||++.+++.+|++||+.+++..++.+..+..++++++++.++|. +..++++++||||||||++||+||+.+|
T Consensus 77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (303)
T TIGR01288 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE--SKADVRVALLSGGMKRRLTLARALINDP 154 (303)
T ss_pred hcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999877666655555667788999999997 4789999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+++|||
T Consensus 155 ~lllLD 160 (303)
T TIGR01288 155 QLLILD 160 (303)
T ss_pred CEEEEe
Confidence 999999
No 28
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.4e-32 Score=283.10 Aligned_cols=159 Identities=26% Similarity=0.427 Sum_probs=140.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~ 701 (800)
+++++|+++.|++. .+.+++++||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 76 (216)
T TIGR00960 1 MIRFEQVSKAYPGG----HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIP 76 (216)
T ss_pred CeEEEEEEEEecCC----CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHH
Confidence 47899999999631 24699999999999999999999999999999999999999999999999988531 22
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
..++.+||+||++.+++.+|++||+.+....++...++.+++++++++.++|. +..++++.+||||||||+++|+||+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~laral~ 154 (216)
T TIGR00960 77 FLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE--GKAHALPMQLSGGEQQRVAIARAIV 154 (216)
T ss_pred HHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999999866555555555667889999999997 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 155 ~~p~llllD 163 (216)
T TIGR00960 155 HKPPLLLAD 163 (216)
T ss_pred cCCCEEEEe
Confidence 999999999
No 29
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-33 Score=294.68 Aligned_cols=156 Identities=29% Similarity=0.461 Sum_probs=140.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCe---ecCccHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL---DIRTDMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~---~i~~~~~~ 702 (800)
+|++++++|.|+. ..|++||+++|+.||.++|+||||||||||+++|+|++.|++|+|.++|. |.+. ...
T Consensus 2 ~i~i~~~~~~~~~------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~-~~~ 74 (345)
T COG1118 2 SIRINNVKKRFGA------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN-LAV 74 (345)
T ss_pred ceeehhhhhhccc------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc-cch
Confidence 5889999999974 67999999999999999999999999999999999999999999999999 5544 222
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcC--CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg--~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
..++||+++||.+||++|||.||+.|..+.+. .++.+++.+++++|+.++|+ ...++++.+||||||||+++||||
T Consensus 75 ~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~--~la~ryP~QLSGGQrQRVALARAL 152 (345)
T COG1118 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE--GLADRYPAQLSGGQRQRVALARAL 152 (345)
T ss_pred hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc--chhhcCchhcChHHHHHHHHHHHh
Confidence 34689999999999999999999999876653 23567888999999999997 599999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+.+|+|||||
T Consensus 153 A~eP~vLLLD 162 (345)
T COG1118 153 AVEPKVLLLD 162 (345)
T ss_pred hcCCCeEeec
Confidence 9999999999
No 30
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-32 Score=283.97 Aligned_cols=156 Identities=39% Similarity=0.569 Sum_probs=140.4
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
|+++|++|.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.....+.++.
T Consensus 1 i~~~~~~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (220)
T cd03265 1 IEVENLVKKYGD------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74 (220)
T ss_pred CEEEEEEEEECC------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhc
Confidence 468999999963 46999999999999999999999999999999999999999999999999886544456678
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.+....++....+.++.++++++.++|. +..++++++||||||||++||+||+.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qr~~la~al~~~p~l 152 (220)
T cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL--EAADRLVKTYSGGMRRRLEIARSLVHRPEV 152 (220)
T ss_pred EEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999876666655555667889999999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 153 lllD 156 (220)
T cd03265 153 LFLD 156 (220)
T ss_pred EEEc
Confidence 9999
No 31
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-32 Score=304.38 Aligned_cols=157 Identities=23% Similarity=0.447 Sum_probs=142.7
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+|+++||+|.|++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ..++
T Consensus 3 ~l~i~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-~~~r 76 (356)
T PRK11650 3 GLKLQAVRKSYDG-----KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE-PADR 76 (356)
T ss_pred EEEEEeEEEEeCC-----CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHC
Confidence 5899999999942 256999999999999999999999999999999999999999999999999986432 2347
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.|||+||+..+|+++||+||+.+..+.++.++.+.+++++++++.++|. ++.++++++|||||||||+|||||+.+|+
T Consensus 77 ~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~QRvalARAL~~~P~ 154 (356)
T PRK11650 77 DIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE--PLLDRKPRELSGGQRQRVAMGRAIVREPA 154 (356)
T ss_pred CEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh--hHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999877766666677778899999999997 48999999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
++|||
T Consensus 155 llLLD 159 (356)
T PRK11650 155 VFLFD 159 (356)
T ss_pred EEEEe
Confidence 99999
No 32
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=6e-33 Score=300.94 Aligned_cols=144 Identities=44% Similarity=0.649 Sum_probs=133.9
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHH
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E 724 (800)
+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.....+.++.+||+||++.+++.+|++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 57999999999999999999999999999999999999999999999999987655566788999999999999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 725 ~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
|+.+++++++.+..+.+++++++++.++|. +..++++++|||||||||+||+||+++|+++|||
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 149 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELG--EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLD 149 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999988887776666677899999999997 4789999999999999999999999999999999
No 33
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.8e-30 Score=329.15 Aligned_cols=159 Identities=25% Similarity=0.347 Sum_probs=139.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCcceEEECCeecCccHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDMD 701 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~---ptsG~I~i~G~~i~~~~~ 701 (800)
..++++||++.|+.+. .++.+|+|||+++++||++||+||||||||||+++|+|+.+ |++|+|+++|+++..
T Consensus 758 ~~l~~~nl~~~~~~~~--~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~--- 832 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKK--EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS--- 832 (1394)
T ss_pred ceEEEEeeEEEecCCC--CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh---
Confidence 3578999999996432 24679999999999999999999999999999999999998 789999999999853
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCccccccCC----CCChhHHHHH
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAG----KYSGGMKRRL 774 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg---~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~----~LSGG~KrRL 774 (800)
+.++.+|||||++.+++.+||+|+|.+.+.++. .+.++..++++++++.++|. +.+|+.++ +|||||||||
T Consensus 833 ~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~--~~~d~~v~~~~~~LSgGqrqRl 910 (1394)
T TIGR00956 833 SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME--SYADAVVGVPGEGLNVEQRKRL 910 (1394)
T ss_pred hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh--hhCCCeeCCCCCCCCHHHhhHH
Confidence 457889999999999999999999999887663 34455667899999999997 47888887 7999999999
Q ss_pred HHHHHHcCCCc-EEEEc
Q 003716 775 SVAISLIGNPK-VRLSL 790 (800)
Q Consensus 775 siA~ALig~P~-vlLLD 790 (800)
+||+||+.+|+ |+|||
T Consensus 911 ~Ia~aL~~~P~~iLlLD 927 (1394)
T TIGR00956 911 TIGVELVAKPKLLLFLD 927 (1394)
T ss_pred HHHHHHHcCCCeEEEEc
Confidence 99999999997 99999
No 34
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-32 Score=283.69 Aligned_cols=156 Identities=31% Similarity=0.516 Sum_probs=137.7
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HHH
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 702 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~~ 702 (800)
|+++||++.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (235)
T cd03261 1 IELRGLTKSFGG------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYR 74 (235)
T ss_pred CeEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHH
Confidence 468999999963 4699999999999999999999999999999999999999999999999998542 234
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
.++.+||+||++.+++.+|++||+.+..... +.+.++..++++++++.++|. +..++++++|||||||||+||+||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~ia~al~ 152 (235)
T cd03261 75 LRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR--GAEDLYPAELSGGMKKRVALARALA 152 (235)
T ss_pred HhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHh
Confidence 6778999999999999999999998764432 344455667889999999996 4779999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 153 ~~p~llllD 161 (235)
T cd03261 153 LDPELLLYD 161 (235)
T ss_pred cCCCEEEec
Confidence 999999999
No 35
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-33 Score=283.85 Aligned_cols=158 Identities=32% Similarity=0.395 Sum_probs=140.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccH--HH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM--DR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~--~~ 702 (800)
..+++++|+|+|++ .+||+|+||+|++||++||+|||||||||++|+|+|.++|++|+|.++|++|.... ..
T Consensus 3 ~lL~v~~l~k~FGG------l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~i 76 (250)
T COG0411 3 PLLEVRGLSKRFGG------LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76 (250)
T ss_pred ceeeeccceeecCC------EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHH
Confidence 35789999999985 68999999999999999999999999999999999999999999999999997532 34
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhc-------C-----CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK-------N-----LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk-------g-----~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~ 770 (800)
.|..|+--||...+|++|||.||+......+ + ...++..+++.++|+.+||. +.+|.++++||+||
T Consensus 77 ar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~--~~a~~~A~~LsyG~ 154 (250)
T COG0411 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG--ELADRPAGNLSYGQ 154 (250)
T ss_pred HhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc--hhhcchhhcCChhH
Confidence 5677888999999999999999998753322 1 13467788899999999998 48999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEc
Q 003716 771 KRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 771 KrRLsiA~ALig~P~vlLLD 790 (800)
||||.|||||+.+|++|+||
T Consensus 155 qR~LEIArALa~~P~lLLLD 174 (250)
T COG0411 155 QRRLEIARALATQPKLLLLD 174 (250)
T ss_pred hHHHHHHHHHhcCCCEEEec
Confidence 99999999999999999999
No 36
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=4.3e-32 Score=300.88 Aligned_cols=156 Identities=25% Similarity=0.398 Sum_probs=142.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc--ceEEECCeecCccHHHh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS--GTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts--G~I~i~G~~i~~~~~~~ 703 (800)
.|+++||+|.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.... ..
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~-~~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGA------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP-PH 77 (362)
T ss_pred EEEEEEEEEEECC------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC-HH
Confidence 5889999999963 469999999999999999999999999999999999999999 99999999985422 24
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
++.|||++|+..+|+++||+||+.|..+.++.+..+.+++++++++.++|. ++.++++++|||||||||+|||||+.+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~--~~~~~~~~~LSgGq~QRvaLARAL~~~ 155 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG--DAAAHLPAQLSGGMQQRIAIARAIAIE 155 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC--chhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999877766777777788899999999997 489999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|+++|||
T Consensus 156 P~llLLD 162 (362)
T TIGR03258 156 PDVLLLD 162 (362)
T ss_pred CCEEEEc
Confidence 9999999
No 37
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.98 E-value=4.4e-32 Score=279.70 Aligned_cols=160 Identities=30% Similarity=0.413 Sum_probs=138.3
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccH----HH
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM----DR 702 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~----~~ 702 (800)
|+++||++.|++.+ ..+.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ..
T Consensus 1 l~~~~l~~~~~~~~--~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 1 IELKNLSKTYGGGG--EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CeEeeeEEEecCCC--cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHH
Confidence 46899999996421 1156999999999999999999999999999999999999999999999999885421 12
Q ss_pred -hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 -IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 -~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
.++.+||+||++.+++.+|++||+.+....++....+.++.++++++.++|. +..++++++||||||||++||+||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~ 156 (218)
T cd03255 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG--DRLNHYPSELSGGQQQRVAIARALA 156 (218)
T ss_pred HHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc--hhhhcChhhcCHHHHHHHHHHHHHc
Confidence 3467999999999999999999999866655554445567889999999997 4679999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 157 ~~p~lllLD 165 (218)
T cd03255 157 NDPKIILAD 165 (218)
T ss_pred cCCCEEEEc
Confidence 999999999
No 38
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=4.8e-32 Score=278.63 Aligned_cols=155 Identities=29% Similarity=0.462 Sum_probs=137.1
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ...++.
T Consensus 1 l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-~~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGS------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV-PPERRN 73 (213)
T ss_pred CeeeeeEEEeCC------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcC-chhhcc
Confidence 468999999963 4699999999999999999999999999999999999999999999999998642 224568
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.+.....+....+.+++++++++.+++. +..++++.+||||||||++||+||+.+|++
T Consensus 74 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE--GLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred EEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998765544444455567789999999997 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 152 lllD 155 (213)
T cd03259 152 LLLD 155 (213)
T ss_pred EEEc
Confidence 9999
No 39
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=6.8e-32 Score=300.80 Aligned_cols=158 Identities=27% Similarity=0.433 Sum_probs=144.0
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
..+|+++|++|.|++ +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ...
T Consensus 17 ~~~l~l~~v~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~-~~~ 89 (377)
T PRK11607 17 TPLLEIRNLTKSFDG------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV-PPY 89 (377)
T ss_pred CceEEEEeEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC-CHH
Confidence 347999999999963 4699999999999999999999999999999999999999999999999998642 234
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
++.+||+||+..+|+++||+||+.+..+.++.+..+.+++++++++.++|. ++.++++.+|||||||||+|||||+.+
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~~~~LSgGq~QRVaLARAL~~~ 167 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ--EFAKRKPHQLSGGQRQRVALARSLAKR 167 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999876666666677788899999999997 488999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|+++|||
T Consensus 168 P~lLLLD 174 (377)
T PRK11607 168 PKLLLLD 174 (377)
T ss_pred CCEEEEe
Confidence 9999999
No 40
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.98 E-value=6.3e-32 Score=278.89 Aligned_cols=158 Identities=50% Similarity=0.719 Sum_probs=140.9
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
|+++|++|.|++. .+++++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|+++.....+.++.
T Consensus 1 l~~~~l~~~~~~~----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (220)
T cd03263 1 LQIRNLTKTYKKG----TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQS 76 (220)
T ss_pred CEEEeeEEEeCCC----CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhh
Confidence 4689999999631 256999999999999999999999999999999999999999999999999986544556778
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.+....++.+..+..++++++++.++|. +..++++.+||||||||++||+||+.+|++
T Consensus 77 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (220)
T cd03263 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT--DKANKRARTLSGGMKRKLSLAIALIGGPSV 154 (220)
T ss_pred EEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999877666655555567789999999996 478899999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 155 lllD 158 (220)
T cd03263 155 LLLD 158 (220)
T ss_pred EEEC
Confidence 9999
No 41
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.98 E-value=8.4e-32 Score=276.82 Aligned_cols=158 Identities=27% Similarity=0.406 Sum_probs=139.5
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~ 701 (800)
+++++|++|.|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~-----~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (214)
T TIGR02673 1 MIEFHNVSKAYPG-----GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLP 75 (214)
T ss_pred CEEEEeeeEEeCC-----CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 4789999999952 24699999999999999999999999999999999999999999999999998642 22
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
..++.+||+||++.+++.+|++||+.+....++......+++++++++.+++. +..++++.+||||||||++||+||+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 153 (214)
T TIGR02673 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE--HKADAFPEQLSGGEQQRVAIARAIV 153 (214)
T ss_pred HHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999999876555554455667889999999997 4778999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|++++||
T Consensus 154 ~~p~lllLD 162 (214)
T TIGR02673 154 NSPPLLLAD 162 (214)
T ss_pred CCCCEEEEe
Confidence 999999999
No 42
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.98 E-value=7.1e-32 Score=300.34 Aligned_cols=158 Identities=28% Similarity=0.424 Sum_probs=143.3
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
..+|+++|++|.|++ +.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..
T Consensus 12 ~~~L~l~~l~~~~~~------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~ 84 (375)
T PRK09452 12 SPLVELRGISKSFDG------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-AE 84 (375)
T ss_pred CceEEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HH
Confidence 346999999999963 56999999999999999999999999999999999999999999999999986422 23
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
++.+||+||+..+|+++||+||+.|..+.++.+..+.+++++++++.++|. ++.++++.+|||||||||+|||||+.+
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~p~~LSgGq~QRVaLARaL~~~ 162 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE--EFAQRKPHQLSGGQQQRVAIARAVVNK 162 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999876666666667778899999999997 489999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|+++|||
T Consensus 163 P~llLLD 169 (375)
T PRK09452 163 PKVLLLD 169 (375)
T ss_pred CCEEEEe
Confidence 9999999
No 43
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.5e-31 Score=278.99 Aligned_cols=162 Identities=23% Similarity=0.360 Sum_probs=139.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HH--
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-- 701 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~-- 701 (800)
++++++||+|.|+++. ..+.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~ 81 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS--VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAK 81 (233)
T ss_pred ceEEEEeEEEEcCCCC--cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHH
Confidence 4689999999997421 124699999999999999999999999999999999999999999999999998642 11
Q ss_pred -Hh-hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 702 -RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 702 -~~-r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
+. ++.+||+||++.+++.+|++||+.+.....+...++.+++++++++.++|. +..++++.+||||||||+++|+|
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE--HRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHH
Confidence 22 367999999999999999999998865544544555667889999999996 47899999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|+++|||
T Consensus 160 l~~~p~lllLD 170 (233)
T PRK11629 160 LVNNPRLVLAD 170 (233)
T ss_pred HhcCCCEEEEe
Confidence 99999999999
No 44
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=4.2e-32 Score=276.98 Aligned_cols=158 Identities=29% Similarity=0.417 Sum_probs=135.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~ 702 (800)
.+++++||+..|+. .+||++|||++++|||++|+|+||||||||+|.|+|+.+|.+|+|.++|+||+.. .+.
T Consensus 2 ~mL~v~~l~~~YG~------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r 75 (237)
T COG0410 2 PMLEVENLSAGYGK------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER 75 (237)
T ss_pred CceeEEeEeecccc------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHH
Confidence 47899999999974 6899999999999999999999999999999999999999999999999999753 355
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
+|..|+||||...+|+.|||+|||.+.+..+.- +...+..++++.+.+---+ +.+++++++|||||||.|+|||||+.
T Consensus 76 ~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lk-er~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 76 ARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLK-ERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred HhCCeEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHH-HHhcCcccCCChHHHHHHHHHHHHhc
Confidence 778899999999999999999999986544321 1111222667777664322 58899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|++++||
T Consensus 154 ~PklLLLD 161 (237)
T COG0410 154 RPKLLLLD 161 (237)
T ss_pred CCCEEEec
Confidence 99999999
No 45
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.98 E-value=1.1e-31 Score=296.98 Aligned_cols=156 Identities=28% Similarity=0.434 Sum_probs=139.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
.|+++||+|.|++ +.+++++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ...++
T Consensus 2 ~L~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~-~~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGR------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRL-HARDR 74 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-CHHHC
Confidence 4889999999963 5699999999999999999999999999999999999999999999999998642 23457
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lk----g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
.+||+||+..+++++|++||+.+..+.. +.+.++.+++++++++.++|. ++.++++.+||||||||++|||||+
T Consensus 75 ~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA--HLADRYPAQLSGGQKQRVALARALA 152 (353)
T ss_pred CEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999865542 344556678899999999997 4889999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 153 ~~P~llLLD 161 (353)
T PRK10851 153 VEPQILLLD 161 (353)
T ss_pred cCCCEEEEe
Confidence 999999999
No 46
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=1e-31 Score=275.66 Aligned_cols=153 Identities=28% Similarity=0.490 Sum_probs=138.2
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++|+++.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ..++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI---AARNR 71 (210)
T ss_pred CEEEEEEEEECC------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH---HHHcc
Confidence 468999999963 469999999999999999999999999999999999999999999999998753 35678
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
++|+||++.+++.+|++||+.+....++.+..+.++.++++++.+++. +..++++.+||||||||+++|+||+.+|++
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~~~p~~ 149 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS--EYANKRVEELSKGNQQKVQFIAAVIHDPEL 149 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh--HHHhCcHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999876666665566677889999999996 478899999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 150 lllD 153 (210)
T cd03269 150 LILD 153 (210)
T ss_pred EEEe
Confidence 9999
No 47
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.3e-31 Score=277.02 Aligned_cols=156 Identities=29% Similarity=0.422 Sum_probs=137.8
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++|++|.|++.. ..+.+++++||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++.. .++.
T Consensus 1 l~~~~l~~~~~~~~--~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~----~~~~ 74 (220)
T cd03293 1 LEVRNVSKTYGGGG--GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG----PGPD 74 (220)
T ss_pred CeEEEEEEEcCCCC--cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc----ccCc
Confidence 46899999996421 12579999999999999999999999999999999999999999999999998852 3567
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.+....++.+.++..+.++++++.++|. +..++++++||||||||++||+||+.+|++
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrl~la~al~~~p~l 152 (220)
T cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLS--GFENAYPHQLSGGMRQRVALARALAVDPDV 152 (220)
T ss_pred EEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999998866555555555567889999999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
+|||
T Consensus 153 llLD 156 (220)
T cd03293 153 LLLD 156 (220)
T ss_pred EEEC
Confidence 9999
No 48
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.97 E-value=1.5e-31 Score=274.69 Aligned_cols=157 Identities=25% Similarity=0.391 Sum_probs=138.9
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HHH
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 702 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~~ 702 (800)
++++|+++.|++ .+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 75 (214)
T cd03292 1 IEFINVTKTYPN-----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPY 75 (214)
T ss_pred CEEEEEEEEeCC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 468999999963 14699999999999999999999999999999999999999999999999998542 234
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
.++.++|+||++.+++.+|++||+.+....++...++.+++++++++.+++. +..++++++||||||||++||+||+.
T Consensus 76 ~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~ 153 (214)
T cd03292 76 LRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS--HKHRALPAELSGGEQQRVAIARAIVN 153 (214)
T ss_pred HHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHhhCChhhcCHHHHHHHHHHHHHHc
Confidence 5678999999999999999999999876555555555667889999999996 47799999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|++++||
T Consensus 154 ~p~llllD 161 (214)
T cd03292 154 SPTILIAD 161 (214)
T ss_pred CCCEEEEe
Confidence 99999999
No 49
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.4e-31 Score=297.95 Aligned_cols=156 Identities=24% Similarity=0.399 Sum_probs=141.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
.|+++||+|.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 3 ~l~i~~l~~~~~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~-~~~~ 75 (369)
T PRK11000 3 SVTLRNVTKAYGD------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP-PAER 75 (369)
T ss_pred EEEEEEEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HhHC
Confidence 5899999999963 56999999999999999999999999999999999999999999999999986422 2356
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.|||+||+..+++.+|++||+.+....++.+.++.+++++++++.++|. +..++++.+|||||||||+|||||+.+|+
T Consensus 76 ~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~~~~~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA--HLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred CEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 7999999999999999999999876666666666778899999999997 47899999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
++|||
T Consensus 154 lLLLD 158 (369)
T PRK11000 154 VFLLD 158 (369)
T ss_pred EEEEe
Confidence 99999
No 50
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.6e-31 Score=294.74 Aligned_cols=161 Identities=32% Similarity=0.440 Sum_probs=142.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~ 701 (800)
+|+++||+|.|++.+ ..+.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... ..
T Consensus 1 mi~i~~l~~~y~~~~--~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 78 (343)
T PRK11153 1 MIELKNISKVFPQGG--RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELR 78 (343)
T ss_pred CEEEEeEEEEeCCCC--CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHH
Confidence 478999999997311 135799999999999999999999999999999999999999999999999998642 22
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
..++.|||+||++.+++.+|++||+.+.....+.+..+.+++++++++.++|. +..++++.+||||||||++|||||+
T Consensus 79 ~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~qRv~lAraL~ 156 (343)
T PRK11153 79 KARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS--DKADRYPAQLSGGQKQRVAIARALA 156 (343)
T ss_pred HHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999876666666666677899999999997 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 157 ~~p~iLlLD 165 (343)
T PRK11153 157 SNPKVLLCD 165 (343)
T ss_pred cCCCEEEEe
Confidence 999999999
No 51
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.97 E-value=2e-31 Score=278.61 Aligned_cols=157 Identities=27% Similarity=0.417 Sum_probs=139.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+++++|+++.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......++
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~ 74 (236)
T TIGR03864 1 ALEVAGLSFAYGA------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA 74 (236)
T ss_pred CEEEEeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhh
Confidence 3789999999963 5699999999999999999999999999999999999999999999999988643333456
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.++|+||++.+++.+|++||+.+....++....+..+.++++++.++|. +..++++++||||||||++||+||+.+|+
T Consensus 75 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~laral~~~p~ 152 (236)
T TIGR03864 75 RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA--ERADDKVRELNGGHRRRVEIARALLHRPA 152 (236)
T ss_pred hEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999988999999998876665555555567789999999997 47899999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
++|||
T Consensus 153 llllD 157 (236)
T TIGR03864 153 LLLLD 157 (236)
T ss_pred EEEEc
Confidence 99999
No 52
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.97 E-value=1.4e-31 Score=275.03 Aligned_cols=155 Identities=25% Similarity=0.425 Sum_probs=137.7
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
|+++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.... ..++.
T Consensus 1 i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~-~~~~~ 73 (213)
T cd03301 1 VELENVTKRFGN------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP-PKDRD 73 (213)
T ss_pred CEEEeeEEEECC------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-cccce
Confidence 468999999964 46999999999999999999999999999999999999999999999999985421 22467
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
++|+||++.+++.+|++||+.+....++...++.+++++++++.+++. +..++++++||||||||+++|+||+.+|++
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 74 IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE--HLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred EEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--HHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998876655555556677889999999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 152 lllD 155 (213)
T cd03301 152 FLMD 155 (213)
T ss_pred EEEc
Confidence 9999
No 53
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8e-32 Score=270.93 Aligned_cols=160 Identities=26% Similarity=0.395 Sum_probs=146.3
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-----ceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS-----GTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts-----G~I~i~G~~i~~ 698 (800)
...++++||++.|++ +.||+|||++|+++++++|+||+||||||+||++..+....+ |+|.++|++|..
T Consensus 5 ~~~~~~~~l~~yYg~------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~ 78 (253)
T COG1117 5 IPAIEVRDLNLYYGD------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78 (253)
T ss_pred cceeEecceeEEECc------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccC
Confidence 356899999999974 689999999999999999999999999999999999987654 999999999965
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC--ccccccCCCCChhHHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~--~~~d~~~~~LSGG~KrR 773 (800)
+..++|+++|+++|.+.-|| +|++||+.+..+++|+..++.++.|++.|+...|.++ +.+++.+..|||||+||
T Consensus 79 ~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQR 157 (253)
T COG1117 79 PKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQR 157 (253)
T ss_pred CCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHH
Confidence 46788999999999999999 8999999999999999888999999999999988752 35567888999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|+|||||+-+|+|||||
T Consensus 158 LcIARalAv~PeVlLmD 174 (253)
T COG1117 158 LCIARALAVKPEVLLMD 174 (253)
T ss_pred HHHHHHHhcCCcEEEec
Confidence 99999999999999999
No 54
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.6e-31 Score=274.40 Aligned_cols=155 Identities=37% Similarity=0.597 Sum_probs=138.7
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
|+++|+++.|++ +.+++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|+++.......++.
T Consensus 1 i~~~~~~~~~~~------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 73 (211)
T cd03264 1 LQLENLTKRYGK------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73 (211)
T ss_pred CEEEEEEEEECC------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhh
Confidence 468999999963 46999999999999 99999999999999999999999999999999999886433456788
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
++|+||++.+++.+|++||+.+....++....+..+.++++++.++|. +..++++.+||||||||+++|+||+.+|++
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 151 (211)
T cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG--DRAKKKIGSLSGGMRRRVGIAQALVGDPSI 151 (211)
T ss_pred eEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH--HHHhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999876666655555667889999999996 477999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
+|||
T Consensus 152 lllD 155 (211)
T cd03264 152 LIVD 155 (211)
T ss_pred EEEc
Confidence 9999
No 55
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.1e-31 Score=277.51 Aligned_cols=161 Identities=31% Similarity=0.424 Sum_probs=139.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-H---H
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M---D 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~---~ 701 (800)
+|+++|+++.|+++. ..+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... . .
T Consensus 1 ~i~~~~l~~~~~~~~--~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (233)
T cd03258 1 MIELKNVSKVFGDTG--GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78 (233)
T ss_pred CeEEecceEEccCCC--CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 378999999997421 013799999999999999999999999999999999999999999999999998642 1 2
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
..++.+||+||++.+++.+|++||+.+....++....+..+.++++++.++|. +..++++.+||||||||++||+||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE--DKADAYPAQLSGGQKQRVGIARALA 156 (233)
T ss_pred HHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 34678999999999999999999998765555555555567889999999997 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|++++||
T Consensus 157 ~~p~lllLD 165 (233)
T cd03258 157 NNPKVLLCD 165 (233)
T ss_pred cCCCEEEec
Confidence 999999999
No 56
>PRK10908 cell division protein FtsE; Provisional
Probab=99.97 E-value=2.9e-31 Score=274.75 Aligned_cols=158 Identities=25% Similarity=0.393 Sum_probs=138.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~ 701 (800)
+++++|++|.|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~ 75 (222)
T PRK10908 1 MIRFEHVSKAYLG-----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75 (222)
T ss_pred CEEEEeeEEEecC-----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHH
Confidence 3789999999942 24699999999999999999999999999999999999999999999999988541 22
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
..++.+||+||++.+++.+|++||+.+....++...++..++++++++.+++. +..++.+++||||||||+++|+||+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~ 153 (222)
T PRK10908 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL--DKAKNFPIQLSGGEQQRVGIARAVV 153 (222)
T ss_pred HHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCCchhCCHHHHHHHHHHHHHH
Confidence 35678999999999989999999998866555555555566788999999997 3689999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|++++||
T Consensus 154 ~~p~llllD 162 (222)
T PRK10908 154 NKPAVLLAD 162 (222)
T ss_pred cCCCEEEEe
Confidence 999999999
No 57
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.97 E-value=2.2e-31 Score=276.98 Aligned_cols=156 Identities=35% Similarity=0.543 Sum_probs=137.3
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHH-hh
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR-IY 704 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~-~r 704 (800)
++++|++|.|++ +.+++++||++++||++||+|+||||||||+++|+|+++|++|+|+++|+++... ... .+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (232)
T cd03218 1 LRAENLSKRYGK------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74 (232)
T ss_pred CeEEEEEEEeCC------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHh
Confidence 468999999963 4699999999999999999999999999999999999999999999999988542 222 34
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
+.+||+||++.+++.+|++||+.+....++....+..+.++++++.+++. +..++.+++||||||||+++|+||+.+|
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~~~p 152 (232)
T cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT--HLRKSKASSLSGGERRRVEIARALATNP 152 (232)
T ss_pred ccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 67999999999999999999998865555544445566788999999997 4789999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
++++||
T Consensus 153 ~llllD 158 (232)
T cd03218 153 KFLLLD 158 (232)
T ss_pred CEEEec
Confidence 999999
No 58
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.97 E-value=3.4e-31 Score=273.61 Aligned_cols=160 Identities=23% Similarity=0.365 Sum_probs=137.5
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HH---H
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD---R 702 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~---~ 702 (800)
++++|+++.|++.. ..+.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... .. .
T Consensus 2 l~~~~v~~~~~~~~--~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGK--LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCC--cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHH
Confidence 68999999996421 125699999999999999999999999999999999999999999999999998542 11 2
Q ss_pred hh-cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 IY-TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~r-~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
.+ +.+||+||++.+++.+|++||+.+....++....+..+.+.++++.+++. +..++++++||||||||+++|+||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE--HRINHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 23 67999999999999999999998755444444444566788999999996 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 158 ~~p~illlD 166 (221)
T TIGR02211 158 NQPSLVLAD 166 (221)
T ss_pred CCCCEEEEe
Confidence 999999999
No 59
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=3e-31 Score=271.44 Aligned_cols=154 Identities=29% Similarity=0.397 Sum_probs=138.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+++++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.......++
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~ 74 (204)
T PRK13538 1 MLEARNLACERDE------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQ 74 (204)
T ss_pred CeEEEEEEEEECC------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhh
Confidence 4789999999963 4699999999999999999999999999999999999999999999999998654455677
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
+++|++|++.+++.+|++||+.+....++. ..++.++++++.++|. +..++++.+||||||||+++|+||+.+|+
T Consensus 75 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 75 DLLYLGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLA--GFEDVPVRQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred heEEeCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCH--HHhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999987655432 2356788999999996 47899999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 150 llllD 154 (204)
T PRK13538 150 LWILD 154 (204)
T ss_pred EEEEe
Confidence 99999
No 60
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4e-31 Score=277.32 Aligned_cols=159 Identities=31% Similarity=0.454 Sum_probs=139.4
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
++++|+++.|++ .+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ...+.++
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (242)
T cd03295 1 IEFENVTKRYGG-----GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75 (242)
T ss_pred CEEEEEEEEeCC-----cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhc
Confidence 468999999963 1469999999999999999999999999999999999999999999999999864 3345567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.+||+||++.+++.+|++||+.+...+.+...++..+.++++++.+++.+..+.++++.+||||||||++||+||+.+|+
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 155 (242)
T cd03295 76 KIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPP 155 (242)
T ss_pred ceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999998766655544555677899999999962126799999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 156 llllD 160 (242)
T cd03295 156 LLLMD 160 (242)
T ss_pred EEEec
Confidence 99999
No 61
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=3.1e-31 Score=272.07 Aligned_cols=156 Identities=29% Similarity=0.428 Sum_probs=135.3
Q ss_pred EEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhcce
Q 003716 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSM 707 (800)
Q Consensus 629 i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~~I 707 (800)
++|++|.|++. .+.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .....++.+
T Consensus 2 ~~~l~~~~~~~----~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 77 (211)
T cd03225 2 LKNLSFSYPDG----ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKV 77 (211)
T ss_pred ceeEEEecCCC----CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhc
Confidence 68999999641 2569999999999999999999999999999999999999999999999998864 344567789
Q ss_pred EEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 708 GVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 708 GycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
||+||++. .++.+|++||+.+....++....+.++.++++++.++|. +..++++++||||||||+++||||+.+|++
T Consensus 78 ~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~laral~~~p~l 155 (211)
T cd03225 78 GLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE--GLRDRSPFTLSGGQKQRVAIAGVLAMDPDI 155 (211)
T ss_pred eEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999975 366789999998765544444455566789999999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 156 lllD 159 (211)
T cd03225 156 LLLD 159 (211)
T ss_pred EEEc
Confidence 9999
No 62
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.7e-31 Score=277.10 Aligned_cols=156 Identities=33% Similarity=0.435 Sum_probs=136.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
.++++||++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|+++.... ..++
T Consensus 2 ~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGD------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP-VQER 74 (239)
T ss_pred EEEEEeEEEEECC------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-cccc
Confidence 4789999999963 46999999999999999999999999999999999999999999999999875321 2356
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCC----CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNL----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~----~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
.+||+||++.+++.+|++||+.+....++. ...+..+.++++++.++|. +..++++.+|||||||||+||+||+
T Consensus 75 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD--WLADRYPAQLSGGQRQRVALARALA 152 (239)
T ss_pred ceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh--hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 799999999999999999999876544332 2334456788999999996 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|++++||
T Consensus 153 ~~p~llllD 161 (239)
T cd03296 153 VEPKVLLLD 161 (239)
T ss_pred cCCCEEEEc
Confidence 999999999
No 63
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.97 E-value=4.2e-31 Score=271.25 Aligned_cols=156 Identities=28% Similarity=0.410 Sum_probs=137.5
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc---cHHHh
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDRI 703 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~---~~~~~ 703 (800)
++++|+++.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 1 l~~~~l~~~~~~------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (213)
T cd03262 1 IEIKNLHKSFGD------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINEL 74 (213)
T ss_pred CEEEEEEEEECC------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHH
Confidence 468999999963 469999999999999999999999999999999999999999999999999853 23456
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~-lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++.+||+||++.+++.+|++||+.+... .++...++.+++++++++.+++. +..++++.+||||||||+++|+||+.
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~ 152 (213)
T cd03262 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA--DKADAYPAQLSGGQQQRVAIARALAM 152 (213)
T ss_pred HhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhhCccccCHHHHHHHHHHHHHhc
Confidence 7889999999999999999999987542 34444455567789999999996 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 153 ~p~llllD 160 (213)
T cd03262 153 NPKVMLFD 160 (213)
T ss_pred CCCEEEEe
Confidence 99999999
No 64
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.97 E-value=2.9e-31 Score=271.92 Aligned_cols=151 Identities=32% Similarity=0.549 Sum_probs=134.9
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
|+++|++|.|++ +.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .+.++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGK------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRR 73 (208)
T ss_pred CEEEEEEEEECC------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-HHHHhh
Confidence 468999999963 5699999999999999999999999999999999999999999999999988643 455678
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.++...++. .+++++++++.+++. +..++++++|||||||||++|+||+.+|++
T Consensus 74 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 74 IGALIEAPGFYPNLTARENLRLLARLLGI----RKKRIDEVLDVVGLK--DSAKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred EEEecCCCccCccCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCH--HHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999887654442 245688899999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 148 lllD 151 (208)
T cd03268 148 LILD 151 (208)
T ss_pred EEEC
Confidence 9999
No 65
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.97 E-value=3.4e-31 Score=270.57 Aligned_cols=154 Identities=23% Similarity=0.343 Sum_probs=136.0
Q ss_pred EEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc--c---HHHh
Q 003716 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--D---MDRI 703 (800)
Q Consensus 629 i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~--~---~~~~ 703 (800)
++||++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. . ....
T Consensus 1 i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 74 (206)
T TIGR03608 1 LKNISKKFGD------KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFR 74 (206)
T ss_pred CcceEEEECC------EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHH
Confidence 4689999963 469999999999999999999999999999999999999999999999999642 1 1234
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
++.+||++|++.+++.+|++||+.+.....+....+..++++++++.+++. +..++++.+||||||||+++|+||+.+
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qr~~laral~~~ 152 (206)
T TIGR03608 75 REKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN--LKLKQKIYELSGGEQQRVALARAILKD 152 (206)
T ss_pred HhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch--hhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 678999999999999999999999865555555556677889999999996 478999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|+++|||
T Consensus 153 p~llllD 159 (206)
T TIGR03608 153 PPLILAD 159 (206)
T ss_pred CCEEEEe
Confidence 9999999
No 66
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.1e-31 Score=272.29 Aligned_cols=161 Identities=26% Similarity=0.385 Sum_probs=142.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~ 702 (800)
.++.++||++.|+++.. ..+||++|||+|.+||++||+|++|||||||.++|+|+.+|++|+|.++|+++... .+.
T Consensus 2 ~~l~v~nl~~~y~~~~~--~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~ 79 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF--AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKA 79 (252)
T ss_pred ceEEEeceEEEecCCcc--hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchh
Confidence 46899999999986421 23699999999999999999999999999999999999999999999999887542 234
Q ss_pred hhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 703 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 703 ~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
.++.|.++|||+ .|.|..||++.|.-..+.+|.++. ++++.++|+.+||.+ +++++++.+|||||+||++|||||
T Consensus 80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~-~~l~R~P~eLSGGQ~QRiaIARAL 156 (252)
T COG1124 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPP-SFLDRRPHELSGGQRQRIAIARAL 156 (252)
T ss_pred hccceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCH-HHHhcCchhcChhHHHHHHHHHHh
Confidence 567899999997 589999999999877777776544 445999999999985 799999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+-+|++++||
T Consensus 157 ~~~PklLIlD 166 (252)
T COG1124 157 IPEPKLLILD 166 (252)
T ss_pred ccCCCEEEec
Confidence 9999999999
No 67
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.5e-31 Score=282.25 Aligned_cols=163 Identities=28% Similarity=0.398 Sum_probs=139.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc---HHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---MDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~---~~~ 702 (800)
.|+++||+|.|++..+ ..+.+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++... ...
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 2 SIKIENLTHIYMEGTP-FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEEECCCCCc-cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHH
Confidence 4889999999974211 124699999999999999999999999999999999999999999999999998642 245
Q ss_pred hhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 703 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 703 ~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
.++.+||+||++ .++ .+|++||+.+.....+...++..++++++++.++|...+..++++++||||||||++||+||
T Consensus 81 ~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL 159 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVV 159 (287)
T ss_pred HhhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHH
Confidence 678999999986 344 47999999986655667777777889999999999521368999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+.+|+++|||
T Consensus 160 ~~~P~llllD 169 (287)
T PRK13637 160 AMEPKILILD 169 (287)
T ss_pred HcCCCEEEEE
Confidence 9999999999
No 68
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.97 E-value=5.4e-31 Score=274.79 Aligned_cols=156 Identities=33% Similarity=0.460 Sum_probs=135.3
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHH-hh
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR-IY 704 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~-~r 704 (800)
++++|+++.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|+++|+++... ..+ .+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (236)
T cd03219 1 LEVRGLTKRFGG------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74 (236)
T ss_pred CeeeeeEEEECC------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHh
Confidence 468999999963 4699999999999999999999999999999999999999999999999998642 222 34
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCC----------CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNL----------KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~----------~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRL 774 (800)
+.+||+||++.+++.+|++||+.+....++. ...+..+.++++++.+++. +..++++++||||||||+
T Consensus 75 ~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv 152 (236)
T cd03219 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA--DLADRPAGELSYGQQRRL 152 (236)
T ss_pred cCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc--chhhCChhhCCHHHHHHH
Confidence 6799999999999999999999876544321 1234556789999999996 478999999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
++|+||+.+|++++||
T Consensus 153 ~la~al~~~p~llllD 168 (236)
T cd03219 153 EIARALATDPKLLLLD 168 (236)
T ss_pred HHHHHHhcCCCEEEEc
Confidence 9999999999999999
No 69
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=8e-31 Score=274.55 Aligned_cols=157 Identities=26% Similarity=0.380 Sum_probs=138.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc---cHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~---~~~~ 702 (800)
+++++|+++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++.. ....
T Consensus 1 ~l~~~~l~~~~~~------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 74 (240)
T PRK09493 1 MIEFKNVSKHFGP------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74 (240)
T ss_pred CEEEEeEEEEECC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHH
Confidence 3789999999963 469999999999999999999999999999999999999999999999999864 2245
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~-lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
.++.+||+||++.+++.+|++||+.+... .++....+..+.++++++.++|. +..++++.+||||||||++||+||+
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 75 IRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA--ERAHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred HhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh--HHHhcChhhcCHHHHHHHHHHHHHh
Confidence 57789999999999999999999987432 23444455667789999999996 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|++++||
T Consensus 153 ~~p~llllD 161 (240)
T PRK09493 153 VKPKLMLFD 161 (240)
T ss_pred cCCCEEEEc
Confidence 999999999
No 70
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.97 E-value=4.2e-31 Score=292.65 Aligned_cols=144 Identities=26% Similarity=0.357 Sum_probs=132.7
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh----hcceEEecCCCCCCCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI----YTSMGVCPQEDLLWET 719 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~----r~~IGycpQ~~~L~~~ 719 (800)
+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ...+. ++.+|||||++.++++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 579999999999999999999999999999999999999999999999999964 33333 6789999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 720 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 720 LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+|++||+.+...+.+.+.++..+++.++++.++|. .+.++++++|||||||||+|||||+.+|+|+|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~--~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLE--EYEHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc--hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999877777777777788999999999996 4899999999999999999999999999999999
No 71
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7.7e-31 Score=293.81 Aligned_cols=164 Identities=24% Similarity=0.331 Sum_probs=141.7
Q ss_pred CcEEEEeEEEEcCCCCC------------------CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc
Q 003716 625 HAIISDNLRKIYPGRDG------------------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~------------------~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts 686 (800)
..|+++||+|.|+.... .+...+++|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 46888888888875310 012358999999999999999999999999999999999999999
Q ss_pred ceEEECCeecCcc-HHH----hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccc
Q 003716 687 GTAYVQGLDIRTD-MDR----IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK 761 (800)
Q Consensus 687 G~I~i~G~~i~~~-~~~----~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~ 761 (800)
|+|+++|+++... ... .++.+||+||+..+++.+|++||+.+....++.+.++.+++++++++.++|. ++.++
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~--~~~~~ 160 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLE--NYAHS 160 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--hhhhc
Confidence 9999999998642 221 2357999999999999999999999877666766666677899999999997 47899
Q ss_pred cCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 762 QAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 762 ~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
++++||||||||++|||||+.+|+++|||
T Consensus 161 ~~~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 161 YPDELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999999999999999999999
No 72
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.97 E-value=1e-30 Score=271.51 Aligned_cols=162 Identities=21% Similarity=0.347 Sum_probs=139.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HH--
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-- 701 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~-- 701 (800)
.+|+++||++.|++.. ..+.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 5 ~~l~~~~l~~~~~~~~--~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~ 82 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE--HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82 (228)
T ss_pred ceEEEeeeEEEccCCC--cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHH
Confidence 4789999999997421 013599999999999999999999999999999999999999999999999988542 11
Q ss_pred -Hh-hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 702 -RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 702 -~~-r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
+. ++.+||+||++.+++.+|++||+.+....++....+.+++++++++.+++. +..++++.+||||||||++||+|
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLG--KRLDHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhCChhhCCHHHHHHHHHHHH
Confidence 12 357999999999999999999998755444544455677899999999996 47899999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|+++|||
T Consensus 161 l~~~p~llllD 171 (228)
T PRK10584 161 FNGRPDVLFAD 171 (228)
T ss_pred HhcCCCEEEEe
Confidence 99999999999
No 73
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.9e-31 Score=277.45 Aligned_cols=153 Identities=27% Similarity=0.382 Sum_probs=136.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+++++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... ++
T Consensus 1 ml~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~ 70 (255)
T PRK11248 1 MLQISHLYADYGG------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP----GA 70 (255)
T ss_pred CEEEEEEEEEeCC------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CC
Confidence 4789999999963 4699999999999999999999999999999999999999999999999988531 24
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.+||+||++.+++.+|++||+.+....++....+..++++++++.++|. +..++++.+||||||||+++|+||+.+|+
T Consensus 71 ~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qrl~laral~~~p~ 148 (255)
T PRK11248 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE--GAEKRYIWQLSGGQRQRVGIARALAANPQ 148 (255)
T ss_pred cEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999999998765555555555567889999999996 47889999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
++|||
T Consensus 149 lllLD 153 (255)
T PRK11248 149 LLLLD 153 (255)
T ss_pred EEEEe
Confidence 99999
No 74
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=8.1e-31 Score=274.10 Aligned_cols=157 Identities=32% Similarity=0.465 Sum_probs=134.9
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HHH
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 702 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~~ 702 (800)
++++||++.|++ .+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|+++... ...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (241)
T cd03256 1 IEVENLSKTYPN-----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75 (241)
T ss_pred CEEeeEEEecCC-----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHH
Confidence 468999999963 14699999999999999999999999999999999999999999999999998642 334
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhh--------hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGR--------LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~--------lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRL 774 (800)
.++.+||+||++.+++.+|++||+.+... +.+.......++++++++.++|. +..++++.+||||||||+
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL--DKAYQRADQLSGGQQQRV 153 (241)
T ss_pred HHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh--hhhCCCcccCCHHHHHHH
Confidence 56789999999999999999999976321 11222234456788999999996 478999999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|+|+|||
T Consensus 154 ~la~al~~~p~llllD 169 (241)
T cd03256 154 AIARALMQQPKLILAD 169 (241)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
No 75
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.97 E-value=1.2e-30 Score=274.45 Aligned_cols=158 Identities=27% Similarity=0.421 Sum_probs=137.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----cceEEECCeecCc--
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT-- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt-----sG~I~i~G~~i~~-- 698 (800)
+++++||++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~ 74 (247)
T TIGR00972 1 AIEIENLNLFYGE------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74 (247)
T ss_pred CEEEEEEEEEECC------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc
Confidence 4789999999963 46999999999999999999999999999999999999998 9999999999864
Q ss_pred -cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCC--ccccccCCCCChhHHHHH
Q 003716 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 -~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~~--~~~d~~~~~LSGG~KrRL 774 (800)
.....++.+||+||++.+++ +|++||+.+....++. +..+..+.++++++.++|.+. +..++++++||||||||+
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 153 (247)
T TIGR00972 75 IDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRL 153 (247)
T ss_pred cchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHH
Confidence 23456788999999999998 9999999876555542 344556788999999999610 267899999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|+++|||
T Consensus 154 ~laral~~~p~llllD 169 (247)
T TIGR00972 154 CIARALAVEPEVLLLD 169 (247)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
No 76
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.97 E-value=8.4e-31 Score=271.96 Aligned_cols=155 Identities=27% Similarity=0.408 Sum_probs=134.0
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC-----CCCcceEEECCeecCcc--
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT-----RTTSGTAYVQGLDIRTD-- 699 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~-----~ptsG~I~i~G~~i~~~-- 699 (800)
|+++||++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|+++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 74 (227)
T cd03260 1 IELRDLNVYYGD------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74 (227)
T ss_pred CEEEEEEEEcCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch
Confidence 468999999963 46999999999999999999999999999999999999 99999999999998542
Q ss_pred -HHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCCCcccccc--CCCCChhHHHHHH
Q 003716 700 -MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFHGGVADKQ--AGKYSGGMKRRLS 775 (800)
Q Consensus 700 -~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~-~~~~~~v~~~L~~l~L~~~~~~d~~--~~~LSGG~KrRLs 775 (800)
....++.+||+||++.++ .+|++||+.+....++... .+.+++++++++.+++.+ ..+++ +.+||||||||++
T Consensus 75 ~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~LSgG~~qrv~ 151 (227)
T cd03260 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD--EVKDRLHALGLSGGQQQRLC 151 (227)
T ss_pred HHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh--HHhccCCcccCCHHHHHHHH
Confidence 345577899999999888 7999999987655544332 235677899999999963 55666 5999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||+||+.+|++++||
T Consensus 152 la~al~~~p~llllD 166 (227)
T cd03260 152 LARALANEPEVLLLD 166 (227)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
No 77
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.97 E-value=1.4e-30 Score=285.77 Aligned_cols=166 Identities=25% Similarity=0.356 Sum_probs=142.4
Q ss_pred CCcEEEEeEEEEcCCCCC-------CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeec
Q 003716 624 SHAIISDNLRKIYPGRDG-------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 696 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~-------~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i 696 (800)
+..|+++||+|.|+.+.+ .+.+.||+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 457999999999974221 1135799999999999999999999999999999999999999999999999998
Q ss_pred Ccc----HHHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhc--CCCchhHHHHHHHHHHHcCCCCCccccccCCCCCh
Q 003716 697 RTD----MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLK--NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 768 (800)
Q Consensus 697 ~~~----~~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lk--g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSG 768 (800)
... ....+++|||+||++ .+++.+|+.||+.+..... +.++++.+++++++++.++|.+ +..++++++|||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~-~~~~~~p~~LSg 164 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP-NLINRYPHEFSG 164 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh-HHhcCCcccCCH
Confidence 642 234567899999997 6889999999998754433 3555667788899999999953 478999999999
Q ss_pred hHHHHHHHHHHHcCCCcEEEEc
Q 003716 769 GMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 769 G~KrRLsiA~ALig~P~vlLLD 790 (800)
|||||++|||||+.+|++|+||
T Consensus 165 G~~QRv~iArAL~~~P~llilD 186 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICD 186 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999999999999
No 78
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.97 E-value=1.1e-30 Score=265.89 Aligned_cols=152 Identities=27% Similarity=0.403 Sum_probs=134.8
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++|++|.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.......++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (198)
T TIGR01189 1 LAARNLACSRGE------RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74 (198)
T ss_pred CEEEEEEEEECC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhh
Confidence 468999999963 57999999999999999999999999999999999999999999999999986544445678
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.++...++ .+ ++.++++++.+++. +..++++++||||||||++||+|++.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~-~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 148 (198)
T TIGR01189 75 ILYLGHLPGLKPELSALENLHFWAAIHG---GA-QRTIEDALAAVGLT--GFEDLPAAQLSAGQQRRLALARLWLSRAPL 148 (198)
T ss_pred eEEeccCcccccCCcHHHHHHHHHHHcC---Cc-HHHHHHHHHHcCCH--HHhcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999988765443 11 34678899999997 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 149 lllD 152 (198)
T TIGR01189 149 WILD 152 (198)
T ss_pred EEEe
Confidence 9999
No 79
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.97 E-value=1e-30 Score=292.95 Aligned_cols=158 Identities=25% Similarity=0.337 Sum_probs=139.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
.+|+++||+|.|++ +.+|+++||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. ...+.
T Consensus 2 ~~L~~~nls~~y~~------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~ 75 (402)
T PRK09536 2 PMIDVSDLSVEFGD------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAA 75 (402)
T ss_pred ceEEEeeEEEEECC------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHH
Confidence 36899999999963 579999999999999999999999999999999999999999999999999865 44566
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhc--CC--CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLK--NL--KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk--g~--~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
+++|||+||+..++..+|++|++.+....+ .. ...+.+++++++++.+++. +..++++.+||||||||++||||
T Consensus 76 ~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~--~~~~~~~~~LSgGerQRv~IArA 153 (402)
T PRK09536 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA--QFADRPVTSLSGGERQRVLLARA 153 (402)
T ss_pred hcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHH
Confidence 788999999999999999999998743211 11 1344567899999999997 48899999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+++|+++|||
T Consensus 154 L~~~P~iLLLD 164 (402)
T PRK09536 154 LAQATPVLLLD 164 (402)
T ss_pred HHcCCCEEEEE
Confidence 99999999999
No 80
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.3e-30 Score=279.05 Aligned_cols=159 Identities=28% Similarity=0.377 Sum_probs=138.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
+.++++|++|.|++ .+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. ...+.
T Consensus 3 ~~l~~~~l~~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 77 (274)
T PRK13647 3 NIIEVEDLHFRYKD-----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWV 77 (274)
T ss_pred ceEEEEEEEEEeCC-----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHH
Confidence 46899999999963 2469999999999999999999999999999999999999999999999999864 33455
Q ss_pred hcceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++.+||+||++. .+..+|++||+.+.....+....+.+++++++++.++|. +..++++.+||||||||++||+||+.
T Consensus 78 ~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW--DFRDKPPYHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred HhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--HHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 678999999963 344679999998765445555556677899999999996 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|++++||
T Consensus 156 ~p~llllD 163 (274)
T PRK13647 156 DPDVIVLD 163 (274)
T ss_pred CCCEEEEE
Confidence 99999999
No 81
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-30 Score=280.00 Aligned_cols=161 Identities=24% Similarity=0.361 Sum_probs=141.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
.+++++||++.|++.. .+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. ...+.
T Consensus 3 ~~l~~~~l~~~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQ---EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDI 79 (279)
T ss_pred ceEEEEeEEEEcCCCC---cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 3689999999996421 2469999999999999999999999999999999999999999999999999864 34456
Q ss_pred hcceEEecCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~-~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++.+||+||++ .++..+|++||+.+.....+...++..++++++++.++|. +..++.+.+||||||||++||+||+.
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~qrv~lAral~~ 157 (279)
T PRK13650 80 RHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQ--DFKEREPARLSGGQKQRVAIAGAVAM 157 (279)
T ss_pred HhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 78899999997 4677789999998765555666666778899999999997 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 158 ~p~lLlLD 165 (279)
T PRK13650 158 RPKIIILD 165 (279)
T ss_pred CCCEEEEE
Confidence 99999999
No 82
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.97 E-value=9.4e-31 Score=274.12 Aligned_cols=158 Identities=28% Similarity=0.418 Sum_probs=134.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~ 701 (800)
+++++||++.|++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~-----~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T TIGR02315 1 MLEVENLSKVYPN-----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLR 75 (243)
T ss_pred CeEEEeeeeecCC-----CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHH
Confidence 3789999999962 24699999999999999999999999999999999999999999999999988531 23
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhh--------hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHH
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGR--------LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~--------lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR 773 (800)
..++.+||+||++.+++.+|++||+.+... +.+....+.+++++++++.++|. +..++++.+||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qr 153 (243)
T TIGR02315 76 KLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA--DKAYQRADQLSGGQQQR 153 (243)
T ss_pred HHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHHH
Confidence 356789999999999999999999975211 11122234456788999999996 47899999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++||+||+.+|++++||
T Consensus 154 v~la~al~~~p~llllD 170 (243)
T TIGR02315 154 VAIARALAQQPDLILAD 170 (243)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 99999999999999999
No 83
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.97 E-value=1.8e-30 Score=276.98 Aligned_cols=158 Identities=23% Similarity=0.349 Sum_probs=137.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----H
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----M 700 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~ 700 (800)
.+|+++||++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... .
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (269)
T PRK11831 6 NLVDMRGVSFTRGN------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRL 79 (269)
T ss_pred ceEEEeCeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhH
Confidence 57999999999963 5699999999999999999999999999999999999999999999999988532 1
Q ss_pred HHhhcceEEecCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 701 ~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
...++.+||+||+..+++.+|+.||+.+..... +....+.++.+.++++.++|. +..++++++||||||||++||+|
T Consensus 80 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qrv~lara 157 (269)
T PRK11831 80 YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR--GAAKLMPSELSGGMARRAALARA 157 (269)
T ss_pred HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHH
Confidence 234678999999999999999999998753322 233444456788899999997 47899999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|+++|||
T Consensus 158 l~~~p~lllLD 168 (269)
T PRK11831 158 IALEPDLIMFD 168 (269)
T ss_pred HhcCCCEEEEc
Confidence 99999999999
No 84
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.5e-30 Score=279.35 Aligned_cols=160 Identities=21% Similarity=0.339 Sum_probs=141.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~~ 703 (800)
.+++++||++.|++. .+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... ..+.
T Consensus 4 ~~l~~~~l~~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13635 4 EIIRVEHISFRYPDA----ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDV 79 (279)
T ss_pred ceEEEEEEEEEeCCC----CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 468999999999641 25699999999999999999999999999999999999999999999999998643 3445
Q ss_pred hcceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++.|||+||++. ++..+|++||+.+.....+...++..++++++++.++|. +..++++.+||||||||++||+||+.
T Consensus 80 ~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LS~G~~qrv~laral~~ 157 (279)
T PRK13635 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGME--DFLNREPHRLSGGQKQRVAIAGVLAL 157 (279)
T ss_pred hhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCCh--hhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 678999999973 677789999998866555656666677899999999997 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|++||||
T Consensus 158 ~p~lllLD 165 (279)
T PRK13635 158 QPDIIILD 165 (279)
T ss_pred CCCEEEEe
Confidence 99999999
No 85
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.4e-30 Score=280.86 Aligned_cols=161 Identities=23% Similarity=0.309 Sum_probs=138.6
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-----cHH
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DMD 701 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-----~~~ 701 (800)
++++||+|.|++.++ ..+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++.. ...
T Consensus 3 l~~~~l~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTP-FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCc-ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 789999999974221 12469999999999999999999999999999999999999999999999999852 234
Q ss_pred HhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 702 RIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 702 ~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
+.++.+||+||++ .+++ .|++||+.+.....+.+.++..+.++++++.++|.+ ...++++.+|||||||||+||+|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrv~lAra 159 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE-ELLARSPFELSGGQMRRVAIAGV 159 (290)
T ss_pred HHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCh-hhhhCCcccCCHHHHHHHHHHHH
Confidence 5677899999986 4564 699999997655556666666778999999999963 36799999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|+++|||
T Consensus 160 L~~~P~llllD 170 (290)
T PRK13634 160 LAMEPEVLVLD 170 (290)
T ss_pred HHcCCCEEEEE
Confidence 99999999999
No 86
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.6e-31 Score=281.80 Aligned_cols=158 Identities=24% Similarity=0.334 Sum_probs=138.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHHh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRI 703 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~~ 703 (800)
+++++||+|.|++ .+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++... ....
T Consensus 1 ml~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 75 (274)
T PRK13644 1 MIRLENVSYSYPD-----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI 75 (274)
T ss_pred CEEEEEEEEEcCC-----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHH
Confidence 4789999999963 24599999999999999999999999999999999999999999999999998642 3456
Q ss_pred hcceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++.+||+||++. .+..+|++||+.+.....+....+..+.++++++.++|. +..++++++||||||||++||+||+.
T Consensus 76 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~laral~~ 153 (274)
T PRK13644 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE--KYRHRSPKTLSGGQGQCVALAGILTM 153 (274)
T ss_pred HhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--HHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 778999999975 356689999998766555566666677899999999996 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+|+|||
T Consensus 154 ~p~lllLD 161 (274)
T PRK13644 154 EPECLIFD 161 (274)
T ss_pred CCCEEEEe
Confidence 99999999
No 87
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.97 E-value=1.8e-30 Score=273.27 Aligned_cols=157 Identities=27% Similarity=0.374 Sum_probs=137.7
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc------
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD------ 699 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~------ 699 (800)
+++++||++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (250)
T PRK11264 3 AIEVKNLVKKFHG------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76 (250)
T ss_pred cEEEeceEEEECC------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccch
Confidence 5899999999963 4699999999999999999999999999999999999999999999999988531
Q ss_pred ---HHHhhcceEEecCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHH
Q 003716 700 ---MDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 700 ---~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~-lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLs 775 (800)
....++.+||+||++.+++.+|++||+.+... .++....+..+.++++++.++|. +..++++++||||||||++
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA--GKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred hhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--chhhCChhhCChHHHHHHH
Confidence 23456789999999999999999999987432 23444445567788999999996 4679999999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||+||+.+|+++|||
T Consensus 155 la~al~~~p~lllLD 169 (250)
T PRK11264 155 IARALAMRPEVILFD 169 (250)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
No 88
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.9e-30 Score=279.47 Aligned_cols=162 Identities=22% Similarity=0.300 Sum_probs=137.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-----H
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----M 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-----~ 700 (800)
.|+++||+|.|++... ..+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... .
T Consensus 2 ~i~~~~l~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTP-MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCC-ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4789999999974210 024699999999999999999999999999999999999999999999999998532 3
Q ss_pred HHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 701 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 701 ~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
...++.+||+||++ .++ .+|++||+.+.....+...++..+.++++++.++|.+ ++.++++++||||||||++||+
T Consensus 81 ~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrl~lar 158 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE-DLISKSPFELSGGQMRRVAIAG 158 (287)
T ss_pred HHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hHhhCCcccCCHHHHHHHHHHH
Confidence 45567899999996 355 5799999987555455555666778899999999952 3789999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+++|||
T Consensus 159 al~~~p~lLlLD 170 (287)
T PRK13641 159 VMAYEPEILCLD 170 (287)
T ss_pred HHHcCCCEEEEE
Confidence 999999999999
No 89
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.97 E-value=1e-30 Score=273.63 Aligned_cols=145 Identities=27% Similarity=0.439 Sum_probs=128.9
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEec-CCCCCCCCCCH
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCP-QEDLLWETLTG 722 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycp-Q~~~L~~~LTv 722 (800)
.+.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.......++.+||+| |++.+++.+|+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 35799999999999999999999999999999999999999999999999987544445667899998 56788889999
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 723 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 723 ~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+|++.+...+++...++..+.++++++.+++. +..++++.+||||||||+++|+||+.+|++++||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 178 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLE--ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLD 178 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99998876666655556667788999999996 4789999999999999999999999999999999
No 90
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.7e-30 Score=277.45 Aligned_cols=160 Identities=25% Similarity=0.401 Sum_probs=140.0
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
.+++++|++|.|++. .+.+++++||++++||++||+||||||||||+++|+|+.+|++|+|+++|+++.. .....
T Consensus 6 ~~l~~~nl~~~~~~~----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 6 VMIKVENVSFSYPNS----ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred eEEEEEeEEEEcCCC----CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH
Confidence 479999999999631 3569999999999999999999999999999999999999999999999999864 33456
Q ss_pred hcceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++.+||+||++. .++.+|++||+.+.....+...++.++.++++++.++|. +..++++.+||||||||++|||||+.
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~ 159 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME--DYLDKEPQNLSGGQKQRVAIASVLAL 159 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCH--HHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 788999999974 677789999998765444445555666789999999996 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 160 ~p~lllLD 167 (271)
T PRK13632 160 NPEIIIFD 167 (271)
T ss_pred CCCEEEEe
Confidence 99999999
No 91
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=6.5e-29 Score=314.55 Aligned_cols=161 Identities=22% Similarity=0.331 Sum_probs=136.3
Q ss_pred cEEEEeEEEEcCCCCC-------CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CcceEEECCeec
Q 003716 626 AIISDNLRKIYPGRDG-------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDI 696 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~-------~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p--tsG~I~i~G~~i 696 (800)
.+..+||++..+...+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|+++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5889999998853211 1245799999999999999999999999999999999999873 789999999886
Q ss_pred CccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhc---CCCchhHHHHHHHHHHHcCCCCCccccccC-----CCCCh
Q 003716 697 RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK---NLKGPALTQAVEESLKSVNLFHGGVADKQA-----GKYSG 768 (800)
Q Consensus 697 ~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk---g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~-----~~LSG 768 (800)
.. ...++.+|||+|+|.+++.+||+|+|.+.+.++ ..+.++..+.++++++.++|. +.+|+.+ +.|||
T Consensus 947 ~~--~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~--~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 947 KQ--ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD--NLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred Ch--HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh--hHhCCccCCCCCCCcCH
Confidence 42 234677999999999999999999999977654 233345566799999999997 3678876 58999
Q ss_pred hHHHHHHHHHHHcCCCcEEEEc
Q 003716 769 GMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 769 G~KrRLsiA~ALig~P~vlLLD 790 (800)
||||||+||++|+.+|+|+|||
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LD 1044 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMD 1044 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEe
Confidence 9999999999999999999999
No 92
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.2e-30 Score=277.97 Aligned_cols=164 Identities=26% Similarity=0.367 Sum_probs=141.0
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MD 701 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~ 701 (800)
+++++++|++|.|++..+...+.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++... ..
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHH
Confidence 3579999999999742211135699999999999999999999999999999999999999999999999998642 34
Q ss_pred HhhcceEEecCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 702 RIYTSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 702 ~~r~~IGycpQ~~~--L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
+.++.+||+||++. ++ ..|+.|++.+.....+.+..+.+++++++++.++|. ++.++++++||||||||++||+|
T Consensus 82 ~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY--EYRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred HHhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHHHHHHHH
Confidence 56788999999974 44 469999998866555666666677899999999996 48899999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|+++|||
T Consensus 159 l~~~p~llllD 169 (280)
T PRK13633 159 LAMRPECIIFD 169 (280)
T ss_pred HHcCCCEEEEe
Confidence 99999999999
No 93
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=1e-30 Score=267.46 Aligned_cols=149 Identities=28% Similarity=0.399 Sum_probs=128.9
Q ss_pred EEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceE
Q 003716 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG 708 (800)
Q Consensus 629 i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IG 708 (800)
++|++|.|++ .+.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.+|
T Consensus 2 ~~~l~~~~~~-----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~i~ 74 (205)
T cd03226 2 IENISFSYKK-----GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--KERRKSIG 74 (205)
T ss_pred cccEEEEeCC-----cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh--HHhhcceE
Confidence 6799999963 1469999999999999999999999999999999999999999999999998853 34567899
Q ss_pred EecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEE
Q 003716 709 VCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVR 787 (800)
Q Consensus 709 ycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vl 787 (800)
|+||++. .+..+|++||+.+.....+ ...++++++++.++|. +..++++++||||||||+++||||+.+|+++
T Consensus 75 ~~~q~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 75 YVMQDVDYQLFTDSVREELLLGLKELD----AGNEQAETVLKDLDLY--ALKERHPLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred EEecChhhhhhhccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCc--hhcCCCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999974 2345799999987654332 1235788999999997 4789999999999999999999999999999
Q ss_pred EEc
Q 003716 788 LSL 790 (800)
Q Consensus 788 LLD 790 (800)
|||
T Consensus 149 llD 151 (205)
T cd03226 149 IFD 151 (205)
T ss_pred EEe
Confidence 999
No 94
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.97 E-value=1.7e-30 Score=268.48 Aligned_cols=154 Identities=29% Similarity=0.417 Sum_probs=133.0
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHH-hh
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR-IY 704 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~-~r 704 (800)
|+++|++|.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ..+ .+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (222)
T cd03224 1 LEVENLNAGYGK------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74 (222)
T ss_pred CEEeeEEeecCC------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHh
Confidence 468999999963 4699999999999999999999999999999999999999999999999988542 222 35
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHc-CCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-NLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l-~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
+.+||+||++.+++.+|++||+.+.....+ ..+..+.++++++.+ ++. +..++++.+||||||||++|||||+.+
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~ 150 (222)
T cd03224 75 AGIGYVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLK--ERRKQLAGTLSGGEQQMLAIARALMSR 150 (222)
T ss_pred cCeEEeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhh--hhhhCchhhCCHHHHHHHHHHHHHhcC
Confidence 679999999999999999999988655443 233455677888888 465 467999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|++++||
T Consensus 151 p~llllD 157 (222)
T cd03224 151 PKLLLLD 157 (222)
T ss_pred CCEEEEC
Confidence 9999999
No 95
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=272.92 Aligned_cols=158 Identities=31% Similarity=0.469 Sum_probs=146.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecC--ccHHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--TDMDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~--~~~~~ 702 (800)
.+++++++++.|+++ +.+++++|++|++||+++|+||||||||||+++|+|+++|++|.|.++|.++. ....+
T Consensus 2 ~~i~~~~l~~~y~~~-----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~ 76 (235)
T COG1122 2 RMIEAENLSFRYPGR-----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE 76 (235)
T ss_pred ceEEEEEEEEEcCCC-----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHH
Confidence 368899999999752 57999999999999999999999999999999999999999999999999987 45677
Q ss_pred hhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 703 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 703 ~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
+++++||++|++ .++.. ||.|.+.|...-.|++.++++++++++++.+++.+ ++++.+.+|||||||||+||.+|
T Consensus 77 ~~~~vG~VfQnpd~q~~~~-tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~--~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 77 LRQKVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERVAEALELVGLEE--LLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred hhcceEEEEECcccccccC-cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh--hccCCccccCCcceeeHHhhHHH
Confidence 899999999996 56655 99999999888889999899999999999999984 79999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+.+|++++||
T Consensus 154 a~~P~iliLD 163 (235)
T COG1122 154 AMGPEILLLD 163 (235)
T ss_pred HcCCCEEEEc
Confidence 9999999999
No 96
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2e-30 Score=271.77 Aligned_cols=157 Identities=31% Similarity=0.492 Sum_probs=137.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHHh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRI 703 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~~ 703 (800)
+++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|.++... .+..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (241)
T PRK10895 3 TLTAKNLAKAYKG------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA 76 (241)
T ss_pred eEEEeCcEEEeCC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 5889999999963 4699999999999999999999999999999999999999999999999998542 2334
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++.+||+||++.+++.+|++||+.+....+ +...++.++.++++++.+++. +..++++++||||||||+++|+||+.
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE--HLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred HhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH--HHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 678999999999999999999998765443 233345566789999999996 46799999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 155 ~p~llllD 162 (241)
T PRK10895 155 NPKFILLD 162 (241)
T ss_pred CCCEEEEc
Confidence 99999999
No 97
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.7e-30 Score=270.86 Aligned_cols=157 Identities=26% Similarity=0.388 Sum_probs=137.7
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-------
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~------- 698 (800)
+++++|+++.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T PRK11124 2 SIQLNGINCFYGA------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred EEEEEeeEEEECC------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchh
Confidence 5789999999963 469999999999999999999999999999999999999999999999998731
Q ss_pred cHHHhhcceEEecCCCCCCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHH
Q 003716 699 DMDRIYTSMGVCPQEDLLWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 699 ~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~-~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA 777 (800)
.....++.+||+||++.+++.+|++||+.+ .....+....+..+.++++++.+|+. +..++++.+||||||||++||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 76 AIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK--PYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred hHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHH
Confidence 123456789999999999999999999975 33344544455567789999999996 478999999999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
+||+.+|++++||
T Consensus 154 ral~~~p~llilD 166 (242)
T PRK11124 154 RALMMEPQVLLFD 166 (242)
T ss_pred HHHhcCCCEEEEc
Confidence 9999999999999
No 98
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3e-30 Score=278.17 Aligned_cols=162 Identities=22% Similarity=0.277 Sum_probs=139.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-----cH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-----~~ 700 (800)
+|+++|+++.|++.. ...+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++.. ..
T Consensus 1 mi~~~~v~~~y~~~~-~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 1 MIKFEKVNYTYQPNS-PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred CEEEEEEEEEeCCCC-cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccH
Confidence 478999999997421 112369999999999999999999999999999999999999999999999999842 23
Q ss_pred HHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 701 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 701 ~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
.+.++.+||++|++ .+++ .|+.|++.+.....+.+..+.++++.++++.++|.+ ++.++.+.+||||||||++||+
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSgGqkqrvaiA~ 157 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD-EFWEKSPFELSGGQMRRVAIAG 157 (288)
T ss_pred HHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh-hhccCCcccCCHHHHHHHHHHH
Confidence 45678899999986 5666 599999997665556666677788999999999952 3679999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+++|||
T Consensus 158 aL~~~p~illLD 169 (288)
T PRK13643 158 ILAMEPEVLVLD 169 (288)
T ss_pred HHHhCCCEEEEE
Confidence 999999999999
No 99
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.6e-30 Score=278.24 Aligned_cols=162 Identities=20% Similarity=0.305 Sum_probs=139.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-----cH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-----~~ 700 (800)
.++++||+|.|+++.. ..+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.. ..
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP-YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEEEECCCCc-cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 3789999999964211 12469999999999999999999999999999999999999999999999999853 23
Q ss_pred HHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 701 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 701 ~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
..+++.|||+||++ .+++ .|++||+.+.....+....+..+.++++++.+||.. +..++++.+||||||||++||+
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrv~lar 158 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR-DVMSQSPFQMSGGQMRKIAIVS 158 (286)
T ss_pred HHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-hhhhCCcccCCHHHHHHHHHHH
Confidence 45678899999985 4665 499999987655556666677788999999999952 3678999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+++|||
T Consensus 159 aL~~~p~illlD 170 (286)
T PRK13646 159 ILAMNPDIIVLD 170 (286)
T ss_pred HHHhCCCEEEEE
Confidence 999999999999
No 100
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.97 E-value=2.8e-30 Score=267.59 Aligned_cols=162 Identities=23% Similarity=0.320 Sum_probs=133.5
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccH----H
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM----D 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~----~ 701 (800)
+++++||++.|+++. ....+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.... .
T Consensus 1 ~l~~~~v~~~~~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (228)
T cd03257 1 LLEVKNLSVSFPTGG--GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRK 78 (228)
T ss_pred CeEEEeeeEeccCCC--cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHH
Confidence 478999999996421 1136999999999999999999999999999999999999999999999999986422 3
Q ss_pred HhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCc-hhHHHH-HHHHHHHcCCCCCccccccCCCCChhHHHHHHHH
Q 003716 702 RIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKG-PALTQA-VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 702 ~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~-~~~~~~-v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA 777 (800)
..++.+||+||++ .+++.+|++||+.+.....+... .+..+. ++++++.+++.+ ...++++.+||||||||+++|
T Consensus 79 ~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE-EVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred HhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh-hHhhCCchhcCHHHHHHHHHH
Confidence 4567899999998 57778999999987544433222 222222 368899999952 367999999999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
|||+.+|+++|||
T Consensus 158 ral~~~p~lllLD 170 (228)
T cd03257 158 RALALNPKLLIAD 170 (228)
T ss_pred HHHhcCCCEEEec
Confidence 9999999999999
No 101
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.97 E-value=1.8e-30 Score=265.27 Aligned_cols=150 Identities=27% Similarity=0.412 Sum_probs=133.9
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++||++.|++ +.+++++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.......++.
T Consensus 1 l~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (201)
T cd03231 1 LEADELTCERDG------RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74 (201)
T ss_pred CEEEEEEEEeCC------ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhh
Confidence 468999999963 46999999999999999999999999999999999999999999999999986544556788
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.++.... .+++++++++.+++. +..++++.+||||||||+++|+||+.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 75 LLYLGHAPGIKTTLSVLENLRFWHADH------SDEQVEEALARVGLN--GFEDRPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eEEeccccccCCCcCHHHHHHhhcccc------cHHHHHHHHHHcCCh--hhhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998864211 245788999999997 367999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 147 lllD 150 (201)
T cd03231 147 WILD 150 (201)
T ss_pred EEEe
Confidence 9999
No 102
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=3.3e-30 Score=262.99 Aligned_cols=152 Identities=22% Similarity=0.273 Sum_probs=134.5
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+++++|++|.|++ +.+++++||++++||++||+||||||||||+++|+|+.+|++|+|+++|+++.......++
T Consensus 1 ml~~~~l~~~~~~------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~ 74 (200)
T PRK13540 1 MLDVIELDFDYHD------QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQK 74 (200)
T ss_pred CEEEEEEEEEeCC------eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHh
Confidence 3789999999963 4699999999999999999999999999999999999999999999999998655456678
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
++||+||+..+++.+|++||+.+..... . .+..++++++.+++. +..++++++||||||||+++|+|++.+|+
T Consensus 75 ~i~~~~q~~~~~~~~tv~~~~~~~~~~~---~--~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 75 QLCFVGHRSGINPYLTLRENCLYDIHFS---P--GAVGITELCRLFSLE--HLIDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred heEEeccccccCcCCCHHHHHHHHHhcC---c--chHHHHHHHHHcCCc--hhhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999998753221 1 134688999999996 36789999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 148 ~lilD 152 (200)
T PRK13540 148 LWLLD 152 (200)
T ss_pred EEEEe
Confidence 99999
No 103
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=3.7e-30 Score=269.68 Aligned_cols=157 Identities=30% Similarity=0.372 Sum_probs=135.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HH-Hh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-RI 703 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~-~~ 703 (800)
+|+++|+++.|++ +.+++++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++... .. ..
T Consensus 2 ~i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T TIGR03411 2 ILYLEGLSVSFDG------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIA 75 (242)
T ss_pred eEEEEeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHH
Confidence 5889999999963 4699999999999999999999999999999999999999999999999988542 22 23
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhc--------CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLK--------NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk--------g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLs 775 (800)
++.+||+||++.+++.+|++||+.+..... +...++.+++++++++.+++. +..++++++||||||||++
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Ge~qrv~ 153 (242)
T TIGR03411 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA--DEADRLAGLLSHGQKQWLE 153 (242)
T ss_pred hcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHH
Confidence 457999999999999999999998754321 112234566789999999997 4789999999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
+|+||+.+|++++||
T Consensus 154 laral~~~p~~lllD 168 (242)
T TIGR03411 154 IGMLLMQDPKLLLLD 168 (242)
T ss_pred HHHHHhcCCCEEEec
Confidence 999999999999999
No 104
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.9e-30 Score=270.66 Aligned_cols=160 Identities=26% Similarity=0.388 Sum_probs=137.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~- 698 (800)
.+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++| ++|+|+++|+++..
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (253)
T PRK14267 3 FAIETVNLRVYYGS------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76 (253)
T ss_pred ceEEEEeEEEEeCC------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 46899999999963 4699999999999999999999999999999999999987 49999999999852
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~--~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~Kr 772 (800)
...+.++.+||+||++.+++.+|+.||+.+....++. +.++..+.++++++.+++.+ ....++++.+|||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 77 DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred ccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH
Confidence 2335677899999999999999999999876544432 23445567889999999842 12578899999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++||+||+.+|++++||
T Consensus 157 rv~laral~~~p~llllD 174 (253)
T PRK14267 157 RLVIARALAMKPKILLMD 174 (253)
T ss_pred HHHHHHHHhcCCCEEEEc
Confidence 999999999999999999
No 105
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.3e-30 Score=280.32 Aligned_cols=165 Identities=22% Similarity=0.318 Sum_probs=141.4
Q ss_pred CcEEEEeEEEEcCCCCC----CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-
Q 003716 625 HAIISDNLRKIYPGRDG----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD- 699 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~----~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~- 699 (800)
..|+++||+|.|+.+.+ ...+.||+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 47899999999974321 0135799999999999999999999999999999999999999999999999998542
Q ss_pred ---HHHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHH
Q 003716 700 ---MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 700 ---~~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR 773 (800)
....|++|||+||++ .|.+.+|+.+++....+.+ +..+.+..+++.++++.+||.+ ...++++++||||||||
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP-EHYDRYPHMFSGGQRQR 162 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh-HHhcCCCccCCHHHHHH
Confidence 234577899999997 6899999999987644443 4455566778999999999963 46799999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++|||||+.+|++|++|
T Consensus 163 v~iArAL~~~P~lLilD 179 (327)
T PRK11308 163 IAIARALMLDPDVVVAD 179 (327)
T ss_pred HHHHHHHHcCCCEEEEE
Confidence 99999999999999999
No 106
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.8e-30 Score=277.07 Aligned_cols=155 Identities=26% Similarity=0.345 Sum_probs=135.7
Q ss_pred EEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHH---h
Q 003716 628 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR---I 703 (800)
Q Consensus 628 ~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~---~ 703 (800)
.++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ... .
T Consensus 26 ~~~~~~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 99 (269)
T cd03294 26 SKEEILKKTGQ------TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99 (269)
T ss_pred hhhhhhhhcCC------ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhh
Confidence 45789999964 5799999999999999999999999999999999999999999999999988542 111 2
Q ss_pred -hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 -YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 -r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++.+||+||++.+++.+|++||+.+....++....+..++++++++.++|. +..++++++||||||||++||+||+.
T Consensus 100 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~qrv~lAral~~ 177 (269)
T cd03294 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLE--GWEHKYPDELSGGMQQRVGLARALAV 177 (269)
T ss_pred hcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 357999999999999999999998865555554455567789999999996 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 178 ~p~illLD 185 (269)
T cd03294 178 DPDILLMD 185 (269)
T ss_pred CCCEEEEc
Confidence 99999999
No 107
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.97 E-value=6.7e-30 Score=270.53 Aligned_cols=159 Identities=23% Similarity=0.339 Sum_probs=138.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc------
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~------ 698 (800)
..++++||++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 4 NKLNVIDLHKRYGE------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG 77 (257)
T ss_pred ccEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccc
Confidence 46899999999963 569999999999999999999999999999999999999999999999998742
Q ss_pred --------cHHHhhcceEEecCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChh
Q 003716 699 --------DMDRIYTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 769 (800)
Q Consensus 699 --------~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~-~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG 769 (800)
.....++.+||+||++.+++.+|++||+.+.. ...+....+.++++.++++.+++.+ ...++++.+||||
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LS~G 156 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDE-RAQGKYPVHLSGG 156 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCh-hhhhCCcccCCHH
Confidence 12345678999999999999999999998633 3334444556778899999999963 2248899999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEc
Q 003716 770 MKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 770 ~KrRLsiA~ALig~P~vlLLD 790 (800)
||||++||+||+.+|++++||
T Consensus 157 ~~qrv~laral~~~p~llllD 177 (257)
T PRK10619 157 QQQRVSIARALAMEPEVLLFD 177 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999999999
No 108
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.9e-30 Score=269.60 Aligned_cols=159 Identities=26% Similarity=0.378 Sum_probs=137.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc-c
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-D 699 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~-~ 699 (800)
.++++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSFGQ------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEECC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 5899999999963 4699999999999999999999999999999999999974 79999999999854 3
Q ss_pred HHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHHH
Q 003716 700 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 700 ~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~--~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRLs 775 (800)
....++.+||+||++.+++.+|++||+.+....++. ...+..+.++++++.++|.+ .+..++.+.+||||||||++
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 156 (250)
T PRK14247 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLC 156 (250)
T ss_pred HHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHH
Confidence 445677899999999989999999999876544332 23445667899999999852 12578999999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
+||||+.+|++++||
T Consensus 157 laral~~~p~lllLD 171 (250)
T PRK14247 157 IARALAFQPEVLLAD 171 (250)
T ss_pred HHHHHhcCCCEEEEc
Confidence 999999999999999
No 109
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.97 E-value=1.9e-30 Score=266.83 Aligned_cols=150 Identities=29% Similarity=0.463 Sum_probs=129.1
Q ss_pred EEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceE
Q 003716 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG 708 (800)
Q Consensus 629 i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IG 708 (800)
++||+|.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..++.+|
T Consensus 2 ~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----~~~~~i~ 71 (213)
T cd03235 2 VEDLTVSYGG------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE----KERKRIG 71 (213)
T ss_pred cccceeEECC------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH----HHHhheE
Confidence 6799999963 46999999999999999999999999999999999999999999999998774 3567899
Q ss_pred EecCCCCCCC--CCCHHHHHHHHhhhcC----CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 709 VCPQEDLLWE--TLTGREHLLFYGRLKN----LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 709 ycpQ~~~L~~--~LTv~E~L~~~~~lkg----~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
|+||++.+.+ .+|++||+.+.....+ ...++.+++++++++.+++. +..++++.+||||||||++||+||+.
T Consensus 72 ~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~ 149 (213)
T cd03235 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS--ELADRQIGELSGGQQQRVLLARALVQ 149 (213)
T ss_pred EeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH--HHHhCCcccCCHHHHHHHHHHHHHHc
Confidence 9999987642 3799999987432211 12234566789999999996 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 150 ~p~llllD 157 (213)
T cd03235 150 DPDLLLLD 157 (213)
T ss_pred CCCEEEEe
Confidence 99999999
No 110
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6e-30 Score=275.06 Aligned_cols=159 Identities=25% Similarity=0.324 Sum_probs=138.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc---cHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMD 701 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~---~~~ 701 (800)
.+|+++|+++.|++ .+.+++++||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. ...
T Consensus 4 ~~l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~ 78 (283)
T PRK13636 4 YILKVEELNYNYSD-----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLM 78 (283)
T ss_pred ceEEEEeEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHH
Confidence 47899999999963 2469999999999999999999999999999999999999999999999999842 234
Q ss_pred HhhcceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 702 RIYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 702 ~~r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
+.++.+||+||++. .+...|++||+.+.....+.+..+..++++++++.++|. +..++++.+||||||||++||+||
T Consensus 79 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LS~G~~qrl~laraL 156 (283)
T PRK13636 79 KLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIE--HLKDKPTHCLSFGQKKRVAIAGVL 156 (283)
T ss_pred HHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh--hhhhCCcccCCHHHHHHHHHHHHH
Confidence 56788999999963 234579999998755444556666667899999999997 478999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+.+|++++||
T Consensus 157 ~~~p~lLilD 166 (283)
T PRK13636 157 VMEPKVLVLD 166 (283)
T ss_pred HcCCCEEEEe
Confidence 9999999999
No 111
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.4e-30 Score=273.98 Aligned_cols=159 Identities=26% Similarity=0.375 Sum_probs=138.0
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
++++++|++|.|++ .+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. ...+.
T Consensus 2 ~~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (277)
T PRK13652 2 HLIETRDLCYSYSG-----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREV 76 (277)
T ss_pred ceEEEEEEEEEeCC-----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 36889999999963 2359999999999999999999999999999999999999999999999999864 34456
Q ss_pred hcceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++.+||+||++. .+...|++||+.+.....+...++.++.++++++.++|. +..++.+++||||||||++||+||+.
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 77 RKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE--ELRDRVPHHLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred HhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh--hHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 778999999973 233579999998755444555556667889999999996 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|++++||
T Consensus 155 ~p~llilD 162 (277)
T PRK13652 155 EPQVLVLD 162 (277)
T ss_pred CCCEEEEe
Confidence 99999999
No 112
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.9e-30 Score=279.75 Aligned_cols=164 Identities=20% Similarity=0.288 Sum_probs=139.5
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---- 699 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~---- 699 (800)
..+|+++|+++.|++.. ...+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++...
T Consensus 19 ~~~l~~~nl~~~y~~~~-~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQ-ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CceEEEEeEEEEeCCCC-cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 35799999999997421 1124699999999999999999999999999999999999999999999999987532
Q ss_pred -------------HHHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCC
Q 003716 700 -------------MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG 764 (800)
Q Consensus 700 -------------~~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~ 764 (800)
....++.+||++|++ .+++. |++||+.+.....+.+.++..++++++++.++|.+ ...++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~ 175 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD-SYLERSPF 175 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh-hHhcCCcc
Confidence 345678899999986 56764 99999987544445555666778899999999952 37899999
Q ss_pred CCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 765 KYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 765 ~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+||||||||++|||||+.+|+++|||
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLD 201 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFD 201 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999
No 113
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.7e-30 Score=273.92 Aligned_cols=162 Identities=23% Similarity=0.294 Sum_probs=137.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-----cH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-----~~ 700 (800)
.|+++||++.|+++.. ..+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.. ..
T Consensus 2 ~l~~~~l~~~~~~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 2 GINLQNVSYTYQAGTP-FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80 (280)
T ss_pred eEEEEEEEEEcCCCCc-cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCH
Confidence 4789999999974210 01469999999999999999999999999999999999999999999999998853 23
Q ss_pred HHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 701 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 701 ~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
...++.|||+||++ .+++ .|++||+.+.....+...++..+.++++++.++|.+ ...++++.+||||||||++||+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~la~ 158 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE-SLFEKNPFELSGGQMRRVAIAG 158 (280)
T ss_pred HHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hhhhCCcccCCHHHHHHHHHHH
Confidence 45677899999996 4565 699999987655455555556677889999999962 3679999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+++|||
T Consensus 159 al~~~p~lllLD 170 (280)
T PRK13649 159 ILAMEPKILVLD 170 (280)
T ss_pred HHHcCCCEEEEe
Confidence 999999999999
No 114
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.97 E-value=6.3e-30 Score=271.23 Aligned_cols=157 Identities=27% Similarity=0.351 Sum_probs=136.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
+|+++||+|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++.. .....+
T Consensus 2 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (258)
T PRK13548 2 MLEARNLSVRLGG------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75 (258)
T ss_pred eEEEEeEEEEeCC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhh
Confidence 5789999999963 469999999999999999999999999999999999999999999999998854 234456
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc---
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--- 781 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi--- 781 (800)
+.+||+||++.+++.+|++||+.+.....+...++.++.++++++.++|. +..++.+.+||||||||++||+||+
T Consensus 76 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGe~qrv~la~al~~~~ 153 (258)
T PRK13548 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA--HLAGRDYPQLSGGEQQRVQLARVLAQLW 153 (258)
T ss_pred hheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH--hHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 78999999998888899999998754333333344456788999999996 4789999999999999999999999
Q ss_pred ---CCCcEEEEc
Q 003716 782 ---GNPKVRLSL 790 (800)
Q Consensus 782 ---g~P~vlLLD 790 (800)
.+|++++||
T Consensus 154 ~~~~~p~lllLD 165 (258)
T PRK13548 154 EPDGPPRWLLLD 165 (258)
T ss_pred ccCCCCCEEEEe
Confidence 599999999
No 115
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.2e-30 Score=278.47 Aligned_cols=162 Identities=23% Similarity=0.279 Sum_probs=138.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-------
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~------- 698 (800)
.|+++||++.|+++.. ..+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++..
T Consensus 2 ~i~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP-TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCC-ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccc
Confidence 3789999999974211 12369999999999999999999999999999999999999999999999887521
Q ss_pred ------------------cHHHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCcc
Q 003716 699 ------------------DMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 758 (800)
Q Consensus 699 ------------------~~~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~ 758 (800)
...+.++.|||+||++ .++ ..|++||+.+.....+.+.++..++++++++.+||.+ ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~ 158 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE-SY 158 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-hh
Confidence 2345678899999985 455 4699999987655567777777888999999999962 47
Q ss_pred ccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 759 ADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 759 ~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.++++.+||||||||++||+||+.+|+++|||
T Consensus 159 ~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLD 190 (305)
T PRK13651 159 LQRSPFELSGGQKRRVALAGILAMEPDFLVFD 190 (305)
T ss_pred hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 89999999999999999999999999999999
No 116
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=4.6e-30 Score=263.48 Aligned_cols=151 Identities=27% Similarity=0.414 Sum_probs=134.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+++++||+|.|++ +.+++++||+|++||++||+|+||||||||+++|+|+.+|++|+|+++|+++.. . ..++
T Consensus 2 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~-~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVRGG------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD-P-DVAE 73 (207)
T ss_pred EEEEEeEEEEECC------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-h-hhHh
Confidence 5889999999963 469999999999999999999999999999999999999999999999998742 2 2677
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.+||++|++.+++.+|++||+.+....++.. ++.++++++.++|. +..++++++||||||||++||+||+.+|+
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLA--PLAHLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCH--HHHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999998766554321 24578999999996 36789999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 148 llllD 152 (207)
T PRK13539 148 IWILD 152 (207)
T ss_pred EEEEe
Confidence 99999
No 117
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.1e-30 Score=273.74 Aligned_cols=157 Identities=20% Similarity=0.257 Sum_probs=135.7
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc---cHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~---~~~~ 702 (800)
+|+++||++.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ....
T Consensus 1 ml~~~~l~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 74 (271)
T PRK13638 1 MLATSDLWFRYQD------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74 (271)
T ss_pred CeEEEEEEEEcCC------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHH
Confidence 4789999999963 469999999999999999999999999999999999999999999999999842 2345
Q ss_pred hhcceEEecCCCCC-CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 IYTSMGVCPQEDLL-WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~r~~IGycpQ~~~L-~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
.++.+||+||++.+ +...|+.||+.+.....+....+..++++++++.+++. ++.++++.+||||||||++||+||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQ--HFRHQPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred HHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--hHhcCCchhCCHHHHHHHHHHHHHH
Confidence 56789999999753 34568999998765555555555567788999999996 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 153 ~~p~lllLD 161 (271)
T PRK13638 153 LQARYLLLD 161 (271)
T ss_pred cCCCEEEEe
Confidence 999999999
No 118
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.97 E-value=7.2e-30 Score=264.13 Aligned_cols=161 Identities=26% Similarity=0.364 Sum_probs=139.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~ 701 (800)
.++++|+++.|++++ +.+.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~~~--~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (220)
T TIGR02982 1 VISIRNLNHYYGHGS--LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78 (220)
T ss_pred CEEEEEEEEEccCCC--cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHH
Confidence 368999999996421 136799999999999999999999999999999999999999999999999988531 12
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
..++.+||+||++.+++.+|+.||+.+....+ ....++.++.++++++.++|. +..++.+.+||||||||+++|+||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrv~laral 156 (220)
T TIGR02982 79 QLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLG--DHLDYYPHNLSGGQKQRVAIARAL 156 (220)
T ss_pred HHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCh--hhhhcChhhCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999865544 234455667889999999996 478999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+.+|++++||
T Consensus 157 ~~~p~illlD 166 (220)
T TIGR02982 157 VHRPKLVLAD 166 (220)
T ss_pred hcCCCEEEEe
Confidence 9999999999
No 119
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.97 E-value=7.6e-30 Score=265.11 Aligned_cols=157 Identities=27% Similarity=0.360 Sum_probs=135.6
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~ 702 (800)
..+|+++||+|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+
T Consensus 5 ~~~i~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 5 SPLLQLQNVGYLAGD------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78 (225)
T ss_pred CceEEEeccEEeeCC------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHH
Confidence 347999999999963 469999999999999999999999999999999999999999999999998854 3344
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
.++.+||+||++.+++. |++||+.+....++.. ..+++++++++.+++.+ ...++++.+||||||||++||+||+.
T Consensus 79 ~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 79 YRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQ--PDPAIFLDDLERFALPD-TILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred HHhccEEEecccccccc-cHHHHHHhHHhhcCCC--hHHHHHHHHHHHcCCCh-HHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 56789999999988875 9999998754444322 22456789999999952 36799999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|++++||
T Consensus 155 ~p~llllD 162 (225)
T PRK10247 155 MPKVLLLD 162 (225)
T ss_pred CCCEEEEe
Confidence 99999999
No 120
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.7e-30 Score=271.64 Aligned_cols=161 Identities=24% Similarity=0.384 Sum_probs=140.3
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~ 702 (800)
.++++++|++|.|++. .+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....
T Consensus 5 ~~~l~i~~l~~~~~~~----~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 5 NSIIVFKNVSFQYQSD----ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEK 80 (269)
T ss_pred CceEEEEEEEEEcCCC----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 3479999999999742 2459999999999999999999999999999999999999999999999999854 3456
Q ss_pred hhcceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 IYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
+++.+||+||++. +++..|+++|+.+.....+.+.++..++++++++.+++. +..++++++||||||||++||+||+
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML--ERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc--hhhhCCcccCCHHHHHHHHHHHHHH
Confidence 6788999999974 677789999998765444555555667788999999996 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 159 ~~p~lllLD 167 (269)
T PRK13648 159 LNPSVIILD 167 (269)
T ss_pred cCCCEEEEe
Confidence 999999999
No 121
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.4e-30 Score=274.31 Aligned_cols=164 Identities=28% Similarity=0.384 Sum_probs=148.8
Q ss_pred CcEEEEeEEEEcCCCC---------C---------CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc
Q 003716 625 HAIISDNLRKIYPGRD---------G---------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~---------~---------~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts 686 (800)
..|+++|+.|.|+++. | .+....|+|+||+|++|||+.|+|-+|||||||+++|.++++||+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 3688999999998631 1 123467999999999999999999999999999999999999999
Q ss_pred ceEEECCeecCc----cHHHh-hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccc
Q 003716 687 GTAYVQGLDIRT----DMDRI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK 761 (800)
Q Consensus 687 G~I~i~G~~i~~----~~~~~-r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~ 761 (800)
|+|+++|.|+.. +..+. |++++++||+..|+|+.||.||..|...++|+++++.++++.+.|+.+||. ++.++
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~--~~~~~ 160 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE--GYADK 160 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch--hhhhc
Confidence 999999999964 22333 367999999999999999999999999999999999999999999999997 59999
Q ss_pred cCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 762 QAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 762 ~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
++++|||||||||.+||||+.+|+|+|+|
T Consensus 161 yp~eLSGGMqQRVGLARAla~~~~IlLMD 189 (386)
T COG4175 161 YPNELSGGMQQRVGLARALANDPDILLMD 189 (386)
T ss_pred CcccccchHHHHHHHHHHHccCCCEEEec
Confidence 99999999999999999999999999999
No 122
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.97 E-value=8.9e-30 Score=263.78 Aligned_cols=164 Identities=20% Similarity=0.284 Sum_probs=135.3
Q ss_pred cEEEEeEEEEcCCCCC-CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEEC--Ce--ecCc-c
Q 003716 626 AIISDNLRKIYPGRDG-NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ--GL--DIRT-D 699 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~-~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~--G~--~i~~-~ 699 (800)
+++++|++|.|++... +.++.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++ |. ++.. .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 3789999999964211 112479999999999999999999999999999999999999999999998 43 4432 1
Q ss_pred HH---Hh-hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHH
Q 003716 700 MD---RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 700 ~~---~~-r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLs 775 (800)
.. +. ++.+||+||++.+++.+|++|++.+.....+.......++++++++.+++.+ ...++++.+||||||||++
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPE-RLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhhCCcccCCHHHHHHHH
Confidence 11 22 3579999999999999999999987544445444555678889999999963 3468899999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||+||+.+|++++||
T Consensus 160 laral~~~p~llllD 174 (224)
T TIGR02324 160 IARGFIADYPILLLD 174 (224)
T ss_pred HHHHHhcCCCEEEEc
Confidence 999999999999999
No 123
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1e-29 Score=269.41 Aligned_cols=160 Identities=25% Similarity=0.391 Sum_probs=137.6
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~ 698 (800)
..+|+++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 10 ~~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~ 83 (258)
T PRK14268 10 QPQIKVENLNLWYGE------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 (258)
T ss_pred ceeEEEeeeEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc
Confidence 347999999999963 4699999999999999999999999999999999999985 89999999999853
Q ss_pred c---HHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 D---MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 ~---~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
. ....++.+||+||++.+++ +|++||+.+....++.+..+.++.++++++.+++.+ .+..++++.+||||||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 84 PDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQR 162 (258)
T ss_pred ccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHH
Confidence 2 2345678999999998888 899999997655555555555667889999999841 135789999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|+||+||+.+|+++|||
T Consensus 163 v~laral~~~p~llllD 179 (258)
T PRK14268 163 LCIARTLAVKPKIILFD 179 (258)
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 99999999999999999
No 124
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.97 E-value=6.1e-30 Score=284.87 Aligned_cols=145 Identities=26% Similarity=0.382 Sum_probs=129.6
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCe----ecCc-c---HHHhh-cceEEecCCC
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL----DIRT-D---MDRIY-TSMGVCPQED 714 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~----~i~~-~---~~~~r-~~IGycpQ~~ 714 (800)
.+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+ ++.. . ..+.| +.|||+||+.
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 467999999999999999999999999999999999999999999999997 4432 1 12233 5799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 715 LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 715 ~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.+++.+|++||+.+.....+.+..+.+++++++++.++|. ++.++++.+||||||||++|||||+.+|+|+|||
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~--~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLA--QWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999876666776667778899999999997 4889999999999999999999999999999999
No 125
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-29 Score=267.97 Aligned_cols=159 Identities=24% Similarity=0.350 Sum_probs=135.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~- 698 (800)
+.|+++||++.|++ +.+++++||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 5 ~~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 5 PKMEARGLSFFYGD------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred cEEEEeeeEEEECC------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 57899999999963 469999999999999999999999999999999999964 689999999999853
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.+++ .|++||+.+....++.. .+..+++++++++.+++.+ .+..++++.+||||||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 157 (253)
T PRK14242 79 HVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQR 157 (253)
T ss_pred ccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 23455778999999998888 59999998765444442 2345677889999999852 124688999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|+||+||+.+|+++|||
T Consensus 158 v~laral~~~p~llllD 174 (253)
T PRK14242 158 LCIARALAVEPEVLLMD 174 (253)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 99999999999999999
No 126
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.97 E-value=9.3e-30 Score=271.24 Aligned_cols=165 Identities=27% Similarity=0.339 Sum_probs=138.2
Q ss_pred CcEEEEeEEEEcCCCCC---CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cH
Q 003716 625 HAIISDNLRKIYPGRDG---NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM 700 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~---~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~ 700 (800)
.+|+++||+|.|+++.+ ++.+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 46899999999964211 113569999999999999999999999999999999999999999999999999864 23
Q ss_pred HHhhcceEEecCCCC--CCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHH
Q 003716 701 DRIYTSMGVCPQEDL--LWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 701 ~~~r~~IGycpQ~~~--L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA 777 (800)
+..++.+||+||++. +++.+|+.|++.+..+.. +....+..+.++++++.++|.+ ...++++.+||||||||++||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP-DHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh-HHHhcCchhcCHHHHHHHHHH
Confidence 334567999999975 678889999998755443 3344455677899999999952 367889999999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
+||+.+|+|+|||
T Consensus 162 ral~~~p~lllLD 174 (267)
T PRK15112 162 RALILRPKVIIAD 174 (267)
T ss_pred HHHHhCCCEEEEc
Confidence 9999999999999
No 127
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-29 Score=268.51 Aligned_cols=159 Identities=25% Similarity=0.384 Sum_probs=136.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc--
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~-- 698 (800)
.++++|++|.|++ +.+++++||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 4 ~l~i~~v~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYGS------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEECC------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 6899999999964 4699999999999999999999999999999999999974 79999999998842
Q ss_pred -cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHH
Q 003716 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 -~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRL 774 (800)
.....++.+||++|+..+++.+|++||+.+....++. ..++.++.++++++.+++.+ .+..++.+.+||||||||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 157 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRL 157 (258)
T ss_pred cChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH
Confidence 2345677899999999999999999999876544442 34455667889999999841 1357889999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+++|||
T Consensus 158 ~laral~~~p~llllD 173 (258)
T PRK14241 158 CIARAIAVEPDVLLMD 173 (258)
T ss_pred HHHHHHhcCCCEEEEc
Confidence 9999999999999999
No 128
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.7e-30 Score=273.70 Aligned_cols=160 Identities=23% Similarity=0.372 Sum_probs=140.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---ceEEECCeecCc-cH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---GTAYVQGLDIRT-DM 700 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts---G~I~i~G~~i~~-~~ 700 (800)
.+|+++|++|.|++. .+.+++++||+|++||++||+||||||||||+++|+|+++|++ |+|+++|+++.. ..
T Consensus 4 ~~l~i~~l~~~~~~~----~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 4 NIVEFKHVSFTYPDS----KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred ceEEEEEEEEEcCCC----CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH
Confidence 478999999999642 2469999999999999999999999999999999999999998 899999999864 33
Q ss_pred HHhhcceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 701 DRIYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 701 ~~~r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
...++++||+||++. +++.+|++||+.+.....+.+.++..++++++++.++|. +..++++++||||||||++||+|
T Consensus 80 ~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LS~G~~qrv~lara 157 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGML--DYIDSEPANLSGGQKQRVAIAGI 157 (282)
T ss_pred HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCh--hHhcCCcccCCHHHHHHHHHHHH
Confidence 455678999999974 677789999998755555566666677899999999997 47899999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|++++||
T Consensus 158 l~~~P~llllD 168 (282)
T PRK13640 158 LAVEPKIIILD 168 (282)
T ss_pred HHcCCCEEEEE
Confidence 99999999999
No 129
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.97 E-value=6.2e-30 Score=258.63 Aligned_cols=143 Identities=26% Similarity=0.390 Sum_probs=124.7
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc---cHHHhhcceEEecCCC--CCCCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDRIYTSMGVCPQED--LLWET 719 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~---~~~~~r~~IGycpQ~~--~L~~~ 719 (800)
+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .....++.+||+||++ .++ .
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~ 83 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-A 83 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-c
Confidence 569999999999999999999999999999999999999999999999999842 2334567899999997 355 4
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 720 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 720 LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.|++||+.+.....+....+..++++++++.++|. +..++++.+||||||||+++|+||+.+|++++||
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS--GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCch--hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 79999998754444545555667889999999996 4789999999999999999999999999999999
No 130
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=1.1e-29 Score=261.82 Aligned_cols=153 Identities=24% Similarity=0.254 Sum_probs=135.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+++++|++|.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... ..+
T Consensus 10 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~--~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSRNE------EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG--DRS 81 (214)
T ss_pred ceEEEeeEEEecCC------ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch--hhh
Confidence 47899999999963 4699999999999999999999999999999999999999999999999988642 334
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
+.+||++|++.+++.+|++||+.+....++. ..++.++++++.++|. +..++++.+||||||||+++|+|++.+|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLA--GYEDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCCh--hhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 6799999999999999999999887655442 2345678899999997 4689999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
++++||
T Consensus 157 ~llllD 162 (214)
T PRK13543 157 PLWLLD 162 (214)
T ss_pred CEEEEe
Confidence 999999
No 131
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=7.3e-30 Score=262.08 Aligned_cols=153 Identities=25% Similarity=0.369 Sum_probs=130.6
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
|+++|++|.|++ +. .|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ..++.
T Consensus 1 i~~~~l~~~~~~------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~-~~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGE------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP-PADRP 71 (211)
T ss_pred CEEEeEEEEeCC------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCC-HhHcc
Confidence 468999999963 22 3999999999999999999999999999999999999999999999986432 23578
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.+.........++.+++++++++.++|. +..++++.+||||||||++||+||+.+|++
T Consensus 72 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 72 VSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA--GLEKRLPGELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred EEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH--HHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998643321111234456789999999997 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 150 lllD 153 (211)
T cd03298 150 LLLD 153 (211)
T ss_pred EEEc
Confidence 9999
No 132
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-29 Score=271.84 Aligned_cols=160 Identities=21% Similarity=0.344 Sum_probs=139.5
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
+|+++||++.|++. ..+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. .....+
T Consensus 4 ~l~~~~l~~~~~~~---~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 80 (277)
T PRK13642 4 ILEVENLVFKYEKE---SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR 80 (277)
T ss_pred eEEEEEEEEEcCCC---CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHh
Confidence 68999999999742 12469999999999999999999999999999999999999999999999999864 334567
Q ss_pred cceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 705 TSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 705 ~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
+.+||+||++. .+...|+.||+.+.....+...++..++++++++.++|. ++.++++.+||||||||++||+||+.+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~lAraL~~~ 158 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNML--DFKTREPARLSGGQKQRVAVAGIIALR 158 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 88999999974 677789999998755444555556667889999999996 478999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|+++|||
T Consensus 159 p~llllD 165 (277)
T PRK13642 159 PEIIILD 165 (277)
T ss_pred CCEEEEe
Confidence 9999999
No 133
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.3e-29 Score=271.22 Aligned_cols=158 Identities=28% Similarity=0.412 Sum_probs=134.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc---cHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~---~~~~ 702 (800)
+++++|+++.|++ .+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. ....
T Consensus 1 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (275)
T PRK13639 1 ILETRDLKYSYPD-----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75 (275)
T ss_pred CEEEEEEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHH
Confidence 3789999999963 2469999999999999999999999999999999999999999999999999842 2234
Q ss_pred hhcceEEecCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 IYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
+++.|||+||++. .+..+|++||+.+.....+...++..+++.++++.++|. ++.++++++||||||||+++|+||+
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 76 VRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME--GFENKPPHHLSGGQKKRVAIAGILA 153 (275)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc--hhhcCChhhCCHHHHHHHHHHHHHh
Confidence 5788999999963 333469999998643333444555667889999999996 4889999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|++++||
T Consensus 154 ~~p~llllD 162 (275)
T PRK13639 154 MKPEIIVLD 162 (275)
T ss_pred cCCCEEEEe
Confidence 999999999
No 134
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-29 Score=267.66 Aligned_cols=159 Identities=23% Similarity=0.369 Sum_probs=135.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~- 698 (800)
.+++++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|+++..
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (254)
T PRK14273 6 AIIETENLNLFYTD------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN 79 (254)
T ss_pred ceEEEeeeEEEeCC------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc
Confidence 47999999999963 4699999999999999999999999999999999999997 59999999998853
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.+++ +|++||+.+....++. ...+.++.++++++.+++.+ .+..++++++||||||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qr 158 (254)
T PRK14273 80 NFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQR 158 (254)
T ss_pred cccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHH
Confidence 23456778999999998885 8999999876544443 23345677889999998831 135788999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++|||||+.+|+++|||
T Consensus 159 v~laral~~~p~lllLD 175 (254)
T PRK14273 159 LCIARTLAIEPNVILMD 175 (254)
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 99999999999999999
No 135
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-29 Score=269.25 Aligned_cols=160 Identities=24% Similarity=0.383 Sum_probs=136.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~ 698 (800)
...|+++||+|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|+++..
T Consensus 17 ~~~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 17 EIKMRARDVSVFYGE------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred CceEEEEeEEEEECC------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 357999999999963 4699999999999999999999999999999999999975 89999999999853
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMK 771 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~--~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~K 771 (800)
.....++.+||+||++.+++. |++||+.+....++. +..+..++++++++.+++.+ .+..++++.+||||||
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 169 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQ 169 (267)
T ss_pred cccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 234567789999999988885 999999875544443 23345667899999999952 1246789999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
||++|||||+.+|+++|||
T Consensus 170 qrv~laral~~~p~lllLD 188 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMD 188 (267)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 9999999999999999999
No 136
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-29 Score=268.17 Aligned_cols=160 Identities=23% Similarity=0.339 Sum_probs=137.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~ 698 (800)
...++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 11 ~~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 11 PSKIQVRNLNFYYGK------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred CceEEEEEEEEEeCC------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 457999999999963 469999999999999999999999999999999999986 589999999999853
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~Kr 772 (800)
.....++.+||+||++.+++ +|++||+.+..... +.+.++.+++++++++.+++.+ .+..++++.+|||||||
T Consensus 85 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 85 PKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred cccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHH
Confidence 23456788999999998888 89999998765433 4455555678899999999842 13578899999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++||+||+.+|+++|||
T Consensus 164 rv~laral~~~p~lllLD 181 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLD 181 (260)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 999999999999999999
No 137
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.97 E-value=1.3e-29 Score=267.53 Aligned_cols=156 Identities=22% Similarity=0.333 Sum_probs=136.3
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-------
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD------- 699 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~------- 699 (800)
|+++||++.|++ +.+++|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|+++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (252)
T TIGR03005 1 VRFSDVTKRFGI------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74 (252)
T ss_pred CEEEEEEEEeCC------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 468999999963 4699999999999999999999999999999999999999999999999988421
Q ss_pred -------HHHhhcceEEecCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHH
Q 003716 700 -------MDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771 (800)
Q Consensus 700 -------~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~-lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~K 771 (800)
....++.+||+||++.+++.+|+.||+.+... .++....+.++.++++++.+++. +..++.+.+||||||
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA--DKADHMPAQLSGGQQ 152 (252)
T ss_pred cccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hHhhcChhhcCHHHH
Confidence 13456789999999999999999999987432 23444455667789999999996 478999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
||++||+||+.+|+++|||
T Consensus 153 qrv~laral~~~p~llllD 171 (252)
T TIGR03005 153 QRVAIARALAMRPKVMLFD 171 (252)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 9999999999999999999
No 138
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.6e-29 Score=267.43 Aligned_cols=157 Identities=26% Similarity=0.386 Sum_probs=136.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
+++++|+++.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ...+.+
T Consensus 2 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (255)
T PRK11231 2 TLRTENLTVGYGT------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75 (255)
T ss_pred EEEEEeEEEEECC------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHh
Confidence 5889999999963 569999999999999999999999999999999999999999999999998753 334456
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~----lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
+.+||+||+..+++.+|+.|++.+... ..+....+..+.++++++.+++. +..++++.+||||||||++||+|+
T Consensus 76 ~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral 153 (255)
T PRK11231 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN--HLADRRLTDLSGGQRQRAFLAMVL 153 (255)
T ss_pred hheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH--HHHcCCcccCCHHHHHHHHHHHHH
Confidence 789999999999999999999987421 12222234456788999999996 478999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+.+|+++|||
T Consensus 154 ~~~p~llllD 163 (255)
T PRK11231 154 AQDTPVVLLD 163 (255)
T ss_pred hcCCCEEEEc
Confidence 9999999999
No 139
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.97 E-value=1.4e-29 Score=268.83 Aligned_cols=148 Identities=22% Similarity=0.328 Sum_probs=132.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..|+++||+|.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+
T Consensus 11 ~~l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~----~~~ 80 (257)
T PRK11247 11 TPLLLNAVSKRYGE------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA----EAR 80 (257)
T ss_pred CcEEEEEEEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH----Hhh
Confidence 56999999999963 46999999999999999999999999999999999999999999999998763 456
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
+.+||+||++.+++.+|++||+.+.. ++ ..+++++++++.++|. +..++++.+||||||||++||+||+.+|
T Consensus 81 ~~i~~v~q~~~l~~~~tv~enl~~~~--~~----~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 81 EDTRLMFQDARLLPWKKVIDNVGLGL--KG----QWRDAALQALAAVGLA--DRANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred CceEEEecCccCCCCCcHHHHHHhcc--cc----hHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999998742 11 2345788999999997 4789999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+++|||
T Consensus 153 ~lllLD 158 (257)
T PRK11247 153 GLLLLD 158 (257)
T ss_pred CEEEEe
Confidence 999999
No 140
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.6e-29 Score=269.03 Aligned_cols=158 Identities=23% Similarity=0.321 Sum_probs=136.7
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
.+++++||++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. ...+.
T Consensus 10 ~~l~i~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 83 (265)
T PRK10575 10 TTFALRNVSFRVPG------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF 83 (265)
T ss_pred ceEEEeeEEEEECC------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHH
Confidence 46999999999963 479999999999999999999999999999999999999999999999998853 33455
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhh-hcC---CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~-lkg---~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
++.+||+||+..+++.+|+.||+.+... .++ ......+++++++++.+++. +..++++++||||||||+++|+|
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~lara 161 (265)
T PRK10575 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK--PLAHRLVDSLSGGERQRAWIAML 161 (265)
T ss_pred hhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH--HHhcCCcccCCHHHHHHHHHHHH
Confidence 6789999999888899999999986421 111 11233456789999999996 47899999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|+|+|||
T Consensus 162 l~~~p~lllLD 172 (265)
T PRK10575 162 VAQDSRCLLLD 172 (265)
T ss_pred HhcCCCEEEEc
Confidence 99999999999
No 141
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.7e-30 Score=254.67 Aligned_cols=155 Identities=27% Similarity=0.411 Sum_probs=144.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
++.+++++..|+++ ...+++|+|++|.+||.++++||+|||||||+|+++|+.+|+.|.|.++|..|...- .
T Consensus 3 ~l~~~~~sl~y~g~----~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg----a 74 (259)
T COG4525 3 MLNVSHLSLSYEGK----PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG----A 74 (259)
T ss_pred eeehhheEEecCCc----chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC----c
Confidence 56788999999863 256999999999999999999999999999999999999999999999999996532 2
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.-|+++|++.|+|.+|+.||+.|..+++|+++.+..+.+.+.+..+||. +..++.+-+||||||||+.|||||.-+|+
T Consensus 75 ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~--~~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE--GAEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred cceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcc--cccccceEeecchHHHHHHHHHHhhcCcc
Confidence 3599999999999999999999999999999999999999999999997 47799999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
.+|||
T Consensus 153 ~LlLD 157 (259)
T COG4525 153 LLLLD 157 (259)
T ss_pred eEeec
Confidence 99999
No 142
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.97 E-value=1.3e-29 Score=261.03 Aligned_cols=153 Identities=22% Similarity=0.298 Sum_probs=131.3
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++||+|.|++ +++++||++++||++||+||||||||||+++|+|+++|++|+|+++|+++... ...++.
T Consensus 1 ~~~~~l~~~~~~--------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH--------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL-APYQRP 71 (213)
T ss_pred CeEEeeeEEeCC--------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC-Chhccc
Confidence 368999999952 45799999999999999999999999999999999999999999999998642 235678
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.+..........+.+++++++++.+++. +..++.+.+||||||||++||+||+.+|++
T Consensus 72 i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 72 VSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA--DYLDRLPEQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred eEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH--HHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998643221111223456788999999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 150 lllD 153 (213)
T TIGR01277 150 LLLD 153 (213)
T ss_pred EEEc
Confidence 9999
No 143
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.7e-29 Score=266.64 Aligned_cols=158 Identities=27% Similarity=0.359 Sum_probs=134.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-H-HH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~-~~ 702 (800)
.+++++|++|.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... . ..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 77 (255)
T PRK11300 4 PLLSVSGLMMRFGG------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77 (255)
T ss_pred ceEEEeeEEEEECC------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHH
Confidence 36899999999963 5799999999999999999999999999999999999999999999999998642 2 22
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhh-------cCC------C--chhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRL-------KNL------K--GPALTQAVEESLKSVNLFHGGVADKQAGKYS 767 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~l-------kg~------~--~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LS 767 (800)
.+..++|+||++.+++.+|++||+.+.... .+. . ..+..+.++++++.+++. +..++++++||
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS 155 (255)
T PRK11300 78 ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL--EHANRQAGNLA 155 (255)
T ss_pred HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh--hhhhCChhhCC
Confidence 345699999999999999999999874321 111 1 112345678899999996 47899999999
Q ss_pred hhHHHHHHHHHHHcCCCcEEEEc
Q 003716 768 GGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 768 GG~KrRLsiA~ALig~P~vlLLD 790 (800)
||||||++||+||+.+|+++|||
T Consensus 156 ~G~~qrv~la~al~~~p~llllD 178 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLD 178 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999999999
No 144
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.1e-29 Score=268.93 Aligned_cols=158 Identities=22% Similarity=0.347 Sum_probs=135.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~- 698 (800)
.+|+++||++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 12 ~~l~i~nl~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~ 85 (269)
T PRK14259 12 IIISLQNVTISYGT------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDP 85 (269)
T ss_pred ceEEEEeEEEEECC------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 47999999999963 569999999999999999999999999999999999987 699999999998742
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRL 774 (800)
+....++.+||+||++.+++. |++||+.+....++.. .+.++.++++++.+++.. .+..++++.+||||||||+
T Consensus 86 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl 163 (269)
T PRK14259 86 RVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRL 163 (269)
T ss_pred cCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHH
Confidence 344567789999999998884 9999998866555443 234566788899888741 1357889999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|+++|||
T Consensus 164 ~laral~~~p~lllLD 179 (269)
T PRK14259 164 CIARTIAIEPEVILMD 179 (269)
T ss_pred HHHHHHhcCCCEEEEc
Confidence 9999999999999999
No 145
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.8e-29 Score=264.92 Aligned_cols=160 Identities=23% Similarity=0.334 Sum_probs=136.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~--p---tsG~I~i~G~~i~~- 698 (800)
..|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|+++|+++..
T Consensus 3 ~~l~~~nl~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 3 NKVKLEQLNVHFGK------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred cEEEEEEEEEEeCC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccc
Confidence 46899999999963 469999999999999999999999999999999999986 4 69999999999853
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||+..+++.+|++||+.+.....+. ...+.+++++++++.+++.+ .+..++.+++||||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14256 77 GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQR 156 (252)
T ss_pred cCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHH
Confidence 2335677899999999999999999999875444332 33445667889999999852 124678899999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++||+||+.+|++++||
T Consensus 157 l~laral~~~p~llllD 173 (252)
T PRK14256 157 LCIARTIAVKPEVILMD 173 (252)
T ss_pred HHHHHHHhcCCCEEEEc
Confidence 99999999999999999
No 146
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.1e-29 Score=262.87 Aligned_cols=155 Identities=35% Similarity=0.530 Sum_probs=137.9
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
|.++|+++.|++ +.+++++||++++||++||+|+||||||||+++|+|+++|++|+|+++|+++.... ..++.
T Consensus 1 l~~~~l~~~~~~------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~~ 73 (232)
T cd03300 1 IELENVSKFYGG------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-PHKRP 73 (232)
T ss_pred CEEEeEEEEeCC------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-hhhcc
Confidence 468999999963 46999999999999999999999999999999999999999999999999886432 23578
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.+....++......++.++++++.+++. +..++.+.+||||||||++|||||+.+|++
T Consensus 74 i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE--GYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred eEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998765555555555667889999999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 152 lllD 155 (232)
T cd03300 152 LLLD 155 (232)
T ss_pred EEEc
Confidence 9999
No 147
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.96 E-value=2.3e-29 Score=267.78 Aligned_cols=164 Identities=23% Similarity=0.321 Sum_probs=136.8
Q ss_pred cEEEEeEEEEcCCCCC---CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-H-
Q 003716 626 AIISDNLRKIYPGRDG---NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M- 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~---~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~- 700 (800)
+|+++||+|.|++... ..++.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++... .
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 5889999999963110 0135799999999999999999999999999999999999999999999999998642 1
Q ss_pred --HHhhcceEEecCCC--CCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHH
Q 003716 701 --DRIYTSMGVCPQED--LLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 701 --~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~-lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLs 775 (800)
...++.|||+||++ .+++.+|++||+.+... ..+....+.+++++++++.+++.+ ...++++.+||||||||++
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS-EDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh-hhhhCChhhCCHHHHHHHH
Confidence 23567899999996 46788999999976433 233444455677899999999952 3679999999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||+||+.+|+++|||
T Consensus 161 laral~~~p~illLD 175 (265)
T TIGR02769 161 IARALAVKPKLIVLD 175 (265)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
No 148
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.7e-29 Score=264.29 Aligned_cols=158 Identities=22% Similarity=0.353 Sum_probs=135.4
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCcceEEECCeecCc-cHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRT-DMD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~---ptsG~I~i~G~~i~~-~~~ 701 (800)
+++++|+++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++ |++|+|.++|+++.. ...
T Consensus 2 ~~~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLNLFYGK------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeEEEECC------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 5789999999963 469999999999999999999999999999999999974 799999999999864 334
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHHHHH
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~--~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRLsiA 777 (800)
..++.+||+||++.+++ .|++||+.+....++. .....+++++++++.+++.+ .+..++.+.+||||||||+++|
T Consensus 76 ~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 76 ALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred HHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 56778999999999987 6999999876555443 12345567889999999952 1246889999999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
|||+.+|++++||
T Consensus 155 ral~~~p~lllLD 167 (246)
T PRK14269 155 RALAIKPKLLLLD 167 (246)
T ss_pred HHHhcCCCEEEEc
Confidence 9999999999999
No 149
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.2e-29 Score=263.27 Aligned_cols=154 Identities=23% Similarity=0.388 Sum_probs=136.3
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
|.++|+++.|++ + +++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++..... .++.
T Consensus 1 l~~~~l~~~~~~------~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~-~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE------F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP-EKRD 72 (235)
T ss_pred CeeEeEEEEeCC------c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh-hHcC
Confidence 468999999963 2 8999999999999999999999999999999999999999999999999864222 3578
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|+.||+.+.....+....+.++.+.++++.++|. +..++++.+||||||||++||+|++.+|++
T Consensus 73 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID--HLLNRKPETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred EEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999998755455555556667788999999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 151 lllD 154 (235)
T cd03299 151 LLLD 154 (235)
T ss_pred EEEC
Confidence 9999
No 150
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.96 E-value=2.5e-29 Score=266.07 Aligned_cols=156 Identities=26% Similarity=0.382 Sum_probs=134.9
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
++++|+++.|++ +.+++++||++++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. .....++
T Consensus 2 l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (256)
T TIGR03873 2 LRLSRVSWSAGG------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75 (256)
T ss_pred ceEEeEEEEECC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhh
Confidence 678999999963 569999999999999999999999999999999999999999999999999864 3344566
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhh-h---cCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGR-L---KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~-l---kg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
.+||+||++.++..+|++||+.+... . .+....+..+.++++++.+++. +..++++.+||||||||+++|+||+
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 153 (256)
T TIGR03873 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS--HLADRDMSTLSGGERQRVHVARALA 153 (256)
T ss_pred heEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHHHHHHHHHHh
Confidence 79999999888888999999987421 1 1222234456788999999996 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|++++||
T Consensus 154 ~~p~llllD 162 (256)
T TIGR03873 154 QEPKLLLLD 162 (256)
T ss_pred cCCCEEEEc
Confidence 999999999
No 151
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.4e-29 Score=275.73 Aligned_cols=163 Identities=18% Similarity=0.251 Sum_probs=137.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC----CCcceEEECCeecCcc-H
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR----TTSGTAYVQGLDIRTD-M 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~----ptsG~I~i~G~~i~~~-~ 700 (800)
.|+++||++.|+++.+ .+.||+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++... .
T Consensus 3 ~L~v~~l~~~~~~~~~--~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 3 LLNVDKLSVHFGDESA--PFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred eEEEeCeEEEECCCCc--cEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 5899999999975321 2579999999999999999999999999999999999997 4899999999998642 2
Q ss_pred ---HHhh-cceEEecCCC--CCCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCC-CccccccCCCCChhHHH
Q 003716 701 ---DRIY-TSMGVCPQED--LLWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFH-GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 701 ---~~~r-~~IGycpQ~~--~L~~~LTv~E~L~~~~~l-kg~~~~~~~~~v~~~L~~l~L~~-~~~~d~~~~~LSGG~Kr 772 (800)
.+.| +.|||+||++ .+.+.+|+.+++...... .+..+++.++++.++|+.++|.+ ....++++++|||||||
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 2222 4699999997 588999999988765443 24455666788999999999963 13578999999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
||+||+||+.+|++||||
T Consensus 161 Rv~iArAL~~~P~llilD 178 (326)
T PRK11022 161 RVMIAMAIACRPKLLIAD 178 (326)
T ss_pred HHHHHHHHHhCCCEEEEe
Confidence 999999999999999999
No 152
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.3e-29 Score=265.49 Aligned_cols=160 Identities=26% Similarity=0.392 Sum_probs=136.3
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~--p---tsG~I~i~G~~i~~ 698 (800)
+.+|+++|++|.|++ +.+++++||+|++||++||+|+||||||||+++|+|+++ | ++|+|+++|+++..
T Consensus 10 ~~~l~i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 10 QEVYQINGMNLWYGQ------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred CceEEEeeEEEEECC------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 457999999999963 469999999999999999999999999999999999987 3 69999999999852
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~Kr 772 (800)
.....++.+||+||++.+++. |++||+.+....++. ..++..++++++++.+++.+ .+..++++++|||||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred cccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 234567789999999988885 999999876555543 23445567888999999852 12468899999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++||+||+.+|+++|||
T Consensus 163 rv~laral~~~p~llllD 180 (259)
T PRK14274 163 RLCIARALATNPDVLLMD 180 (259)
T ss_pred HHHHHHHHhcCCCEEEEc
Confidence 999999999999999999
No 153
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.3e-29 Score=271.24 Aligned_cols=163 Identities=24% Similarity=0.276 Sum_probs=136.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc------
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~------ 698 (800)
..|+++||+|.|+++.+ ..+.+++|+||+|++||++||+|+||||||||+|+|+|+++|++|+|+++|+++..
T Consensus 5 ~~l~i~nl~~~~~~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 5 KDIILDNVSYTYAKKTP-FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred ceEEEEEEEEEeCCCCc-cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35899999999974210 01359999999999999999999999999999999999999999999999998742
Q ss_pred cHHHhhcceEEecCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHH
Q 003716 699 DMDRIYTSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 776 (800)
Q Consensus 699 ~~~~~r~~IGycpQ~~~--L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsi 776 (800)
.....++.+||+||++. +++ .|++||+.+....++...++..++++++++.++|.. +..++++++||||||||++|
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-~~~~~~~~~LS~Gq~qrv~l 161 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE-DYVKRSPFELSGGQKRRVAL 161 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hHhcCChhhCCHHHHHHHHH
Confidence 23456778999999973 444 599999987544444444555667889999999942 47899999999999999999
Q ss_pred HHHHcCCCcEEEEc
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 A~ALig~P~vlLLD 790 (800)
||||+.+|+++|||
T Consensus 162 aral~~~p~lLlLD 175 (289)
T PRK13645 162 AGIIAMDGNTLVLD 175 (289)
T ss_pred HHHHHhCCCEEEEe
Confidence 99999999999999
No 154
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.96 E-value=1.9e-29 Score=262.40 Aligned_cols=153 Identities=28% Similarity=0.405 Sum_probs=131.0
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-H-HHhh
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DRIY 704 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~-~~~r 704 (800)
|+++||++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++... . ...+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (230)
T TIGR03410 1 LEVSNLNVYYGQ------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74 (230)
T ss_pred CEEEeEEEEeCC------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHH
Confidence 468999999963 4699999999999999999999999999999999999999999999999998542 2 2245
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcC-CCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN-LFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~-L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
+.+||+||++.+++.+|++||+.+....++.. ..+.++++++.++ +. +..++++.+||||||||++||+||+.+
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (230)
T TIGR03410 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLK--EMLGRRGGDLSGGQQQQLAIARALVTR 149 (230)
T ss_pred hCeEEeccCCcccCCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHH--HHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 68999999999999999999998765443322 2334577788776 44 467999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|++++||
T Consensus 150 p~illlD 156 (230)
T TIGR03410 150 PKLLLLD 156 (230)
T ss_pred CCEEEec
Confidence 9999999
No 155
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.6e-29 Score=263.90 Aligned_cols=160 Identities=25% Similarity=0.376 Sum_probs=136.7
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~ 698 (800)
++.++++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 2 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 2 KIKMESKNLNLWYGE------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred ccEEEEEEeEEEECC------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 357899999999963 4699999999999999999999999999999999999875 79999999999853
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~Kr 772 (800)
.....++.+||+||++.+++ +|++||+.+.....+. ...+..++++++++.+++.+ .+..++++.+|||||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQ 154 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 22345778999999999887 8999999976555544 23345567888999998842 13578899999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++||+||+.+|+|++||
T Consensus 155 rv~laral~~~p~llllD 172 (251)
T PRK14270 155 RLCIARTIAVKPDVILMD 172 (251)
T ss_pred HHHHHHHHhcCCCEEEEe
Confidence 999999999999999999
No 156
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2e-29 Score=264.56 Aligned_cols=153 Identities=29% Similarity=0.417 Sum_probs=132.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.++++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 76 (241)
T PRK14250 3 EIEFKEVSYSSFG------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76 (241)
T ss_pred eEEEEeEEEEeCC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhh
Confidence 5889999999963 469999999999999999999999999999999999999999999999999854 334556
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
+.+||+||++.+++ .|++||+.+....++ ...++++++++.++|.+ +..++.+.+||||||||++||+||+.+|
T Consensus 77 ~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 77 RKIGMVFQQPHLFE-GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNK-EYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred hcEEEEecCchhch-hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCH-HHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 78999999998887 699999986433332 12456788999999952 3678999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+++|||
T Consensus 151 ~llllD 156 (241)
T PRK14250 151 EVLLLD 156 (241)
T ss_pred CEEEEe
Confidence 999999
No 157
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.96 E-value=2.4e-29 Score=263.33 Aligned_cols=155 Identities=28% Similarity=0.448 Sum_probs=137.1
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++|+++.|++ +.+++|+||++.+||++||+|+||||||||+++|+|+++|++|+|.++|.++... ...++.
T Consensus 1 i~i~~l~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~-~~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGS------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV-HARDRK 73 (237)
T ss_pred CEEEEEEEEECC------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC-ChhhcC
Confidence 468999999963 4699999999999999999999999999999999999999999999999998542 234678
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.+....++.......+.++++++.+++. ++.++.+++||||||||+++|+||+.+|++
T Consensus 74 i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE--GLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred EEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998765555544445566789999999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 152 lllD 155 (237)
T TIGR00968 152 LLLD 155 (237)
T ss_pred EEEc
Confidence 9999
No 158
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.4e-29 Score=267.65 Aligned_cols=158 Identities=19% Similarity=0.300 Sum_probs=136.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
.+|.++||+|.|++ +.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 6 ~~l~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (265)
T PRK10253 6 ARLRGEQLTLGYGK------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79 (265)
T ss_pred cEEEEEEEEEEECC------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHH
Confidence 47999999999963 469999999999999999999999999999999999999999999999998854 33445
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhh-hcC---CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~-lkg---~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
++.+||+||++.+++.+|++||+.+... ..+ ...+..++.++++++.++|. +..++++.+||||||||++||+|
T Consensus 80 ~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~qrv~lara 157 (265)
T PRK10253 80 ARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT--HLADQSVDTLSGGQRQRAWIAMV 157 (265)
T ss_pred hhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH--HHhcCCcccCChHHHHHHHHHHH
Confidence 6789999999999999999999986421 111 11233456788999999996 47899999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|+++|||
T Consensus 158 l~~~p~llllD 168 (265)
T PRK10253 158 LAQETAIMLLD 168 (265)
T ss_pred HhcCCCEEEEe
Confidence 99999999999
No 159
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.96 E-value=3e-29 Score=266.29 Aligned_cols=158 Identities=23% Similarity=0.324 Sum_probs=135.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---cceEEECCeecCc---
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRT--- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt---sG~I~i~G~~i~~--- 698 (800)
++++++||++.|++ +.+++++||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++..
T Consensus 3 ~~l~~~nl~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~ 76 (262)
T PRK09984 3 TIIRVEKLAKTFNQ------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76 (262)
T ss_pred cEEEEeeEEEEeCC------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccc
Confidence 47899999999963 56999999999999999999999999999999999999986 4999999998853
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhh--------cCCCchhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL--------KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYS 767 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~l--------kg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LS 767 (800)
.....++.+||+||++.+++.+|++||+.+.... .+....+.+++++++++.+++. +..++.+++||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS 154 (262)
T PRK09984 77 LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV--HFAHQRVSTLS 154 (262)
T ss_pred cchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH--HHHhCCccccC
Confidence 2244567899999999999999999999864210 0111234456789999999996 47899999999
Q ss_pred hhHHHHHHHHHHHcCCCcEEEEc
Q 003716 768 GGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 768 GG~KrRLsiA~ALig~P~vlLLD 790 (800)
||||||++|||||+.+|+|||||
T Consensus 155 ~G~~qrv~laral~~~p~llllD 177 (262)
T PRK09984 155 GGQQQRVAIARALMQQAKVILAD 177 (262)
T ss_pred HHHHHHHHHHHHHhcCCCEEEec
Confidence 99999999999999999999999
No 160
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.7e-29 Score=265.11 Aligned_cols=161 Identities=24% Similarity=0.356 Sum_probs=134.7
Q ss_pred CCCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecC
Q 003716 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIR 697 (800)
Q Consensus 623 ~~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~ 697 (800)
..++++++|+++.|++ +.+++++||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|+++.
T Consensus 18 ~~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 18 KEHILEVKDLSIYYGE------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred CCceEEEEEEEEEeCC------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 3467999999999963 469999999999999999999999999999999999864 79999999999985
Q ss_pred c---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHH
Q 003716 698 T---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMK 771 (800)
Q Consensus 698 ~---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~K 771 (800)
. .....++.+||+||++.+++. |++||+.+.....+.. ....++.+++.++.+++.+ .+..++++++||||||
T Consensus 92 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 92 DSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred cccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHH
Confidence 3 223456789999999998885 9999998754433322 2234566788899998842 1256899999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
||++||+||+.+|+++|||
T Consensus 171 qrl~laral~~~p~lllLD 189 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLD 189 (268)
T ss_pred HHHHHHHHHhCCCCEEEEc
Confidence 9999999999999999999
No 161
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.96 E-value=3.2e-29 Score=262.40 Aligned_cols=157 Identities=21% Similarity=0.271 Sum_probs=131.6
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCcceEEECCeecCcc-HHH-
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTD-MDR- 702 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~--~ptsG~I~i~G~~i~~~-~~~- 702 (800)
|+++||+|.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR01978 1 LKIKDLHVSVED------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74 (243)
T ss_pred CeEeeEEEEECC------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHh
Confidence 468999999963 56999999999999999999999999999999999995 79999999999988642 222
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhc-C------CCchhHHHHHHHHHHHcCCCCCccccccCC-CCChhHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK-N------LKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRRL 774 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk-g------~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~-~LSGG~KrRL 774 (800)
.+..++|+||++.+++.+|++|++.+..... + ....+..+.++++++.++|.+ +..++++. +|||||||||
T Consensus 75 ~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LS~G~~qrl 153 (243)
T TIGR01978 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDE-EFLNRSVNEGFSGGEKKRN 153 (243)
T ss_pred hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCch-hhcccccccCcCHHHHHHH
Confidence 3445999999999999999999998754321 1 122334567899999999963 36788887 5999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|++++||
T Consensus 154 ~la~al~~~p~llllD 169 (243)
T TIGR01978 154 EILQMALLEPKLAILD 169 (243)
T ss_pred HHHHHHhcCCCEEEec
Confidence 9999999999999999
No 162
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.8e-29 Score=262.39 Aligned_cols=156 Identities=24% Similarity=0.368 Sum_probs=133.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-H-HH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~-~~ 702 (800)
.+++++|++|.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... . +.
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 77 (237)
T PRK11614 4 VMLSFDKVSAHYGK------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI 77 (237)
T ss_pred cEEEEEeEEEeeCC------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHH
Confidence 36899999999963 4699999999999999999999999999999999999999999999999998542 2 23
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHc-CCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-NLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l-~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
.++.+||+||++.+++.+|++||+.+..... ...+..+.++++++.+ ++. +..++++++||||||||++||+||+
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 153 (237)
T PRK11614 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLH--ERRIQRAGTMSGGEQQMLAIGRALM 153 (237)
T ss_pred HHhCEEEeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHH--HHHhCchhhCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999998743221 2233455677788887 475 3678899999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+|++||
T Consensus 154 ~~p~illlD 162 (237)
T PRK11614 154 SQPRLLLLD 162 (237)
T ss_pred hCCCEEEEc
Confidence 999999999
No 163
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.96 E-value=3.4e-29 Score=259.43 Aligned_cols=149 Identities=36% Similarity=0.570 Sum_probs=132.2
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++|++|.|++ +.+++++||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++... .++.
T Consensus 1 l~l~~v~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~~~~ 71 (223)
T TIGR03740 1 LETKNLSKRFGK------QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---DLHK 71 (223)
T ss_pred CEEEeEEEEECC------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---cccc
Confidence 468999999963 4699999999999999999999999999999999999999999999999987532 1357
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+.++...++.. ++.+.++++.+++. +..++.+.+||||||||+++|+|++.+|++
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~~rv~laral~~~p~l 145 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLT--NTGKKKAKQFSLGMKQRLGIAIALLNHPKL 145 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCc--HHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998876554432 34678899999997 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 146 lllD 149 (223)
T TIGR03740 146 LILD 149 (223)
T ss_pred EEEC
Confidence 9999
No 164
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.1e-29 Score=267.14 Aligned_cols=159 Identities=23% Similarity=0.405 Sum_probs=136.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~ 698 (800)
.++|+++||+|.|++ +.+++++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 37 ~~~l~i~~l~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~ 110 (285)
T PRK14254 37 ETVIEARDLNVFYGD------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110 (285)
T ss_pred CceEEEEEEEEEECC------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 457999999999963 469999999999999999999999999999999999987 689999999999853
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.+++. |++||+.+....++.+. +.+++++++++.+++.+ .+..++++.+||||||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 111 ADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQR 188 (285)
T ss_pred cccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHH
Confidence 234567789999999988885 99999987655555432 45667899999999852 135689999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++||+||+.+|+|+|||
T Consensus 189 v~LAraL~~~p~lLLLD 205 (285)
T PRK14254 189 LCIARAIAPDPEVILMD 205 (285)
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 99999999999999999
No 165
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6.5e-29 Score=261.64 Aligned_cols=158 Identities=25% Similarity=0.401 Sum_probs=134.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc--
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~-- 698 (800)
.|+++||+|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+| ++|+|+++|+++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYGD------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEECC------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 5889999999963 4699999999999999999999999999999999999763 79999999999853
Q ss_pred -cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHH
Q 003716 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 -~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRL 774 (800)
.....++.+||+||++.+++ +|++||+.+....++.. .++.++.++++++.+++.+ .+..++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRL 155 (250)
T ss_pred cchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHH
Confidence 23456778999999998888 89999999765555532 3345677888999998742 1256889999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|++++||
T Consensus 156 ~laral~~~p~llllD 171 (250)
T PRK14240 156 CIARALAVEPEVLLMD 171 (250)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
No 166
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.7e-29 Score=261.25 Aligned_cols=159 Identities=24% Similarity=0.364 Sum_probs=134.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCC---CCC--CcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI---TRT--TSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl---~~p--tsG~I~i~G~~i~~- 698 (800)
.+++++|++|.|++ +.+++++||+|++||++||+|+||||||||+++|+|+ .+| ++|+|.++|+++..
T Consensus 2 ~~l~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVNFWYGD------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEEEEECC------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccc
Confidence 46899999999963 4699999999999999999999999999999999997 455 59999999999854
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~-~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.+++ .|++||+.+....++... +..++.++++++.+++.+ .+..++++.+||||||||
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred cccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 23456778999999998887 599999987554444332 345567889999999852 125688999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++||+||+.+|+++|||
T Consensus 155 v~laral~~~p~lllLD 171 (250)
T PRK14245 155 LCIARAMAVSPSVLLMD 171 (250)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 99999999999999999
No 167
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4e-29 Score=260.61 Aligned_cols=154 Identities=21% Similarity=0.301 Sum_probs=131.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+++++||+|.|++ +. .++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ..++
T Consensus 1 ~l~~~~l~~~~~~------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHH------LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTP-PSRR 71 (232)
T ss_pred CeEEEEEEEEECC------cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCC-hhhc
Confidence 3789999999963 22 3899999999999999999999999999999999999999999999886422 2356
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.+||+||++.+++.+|+.||+.+.........+..+++++++++.++|. +..++++.+||||||||+++|+|++.+|+
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~ 149 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE--DLLARLPGQLSGGQRQRVALARCLVREQP 149 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH--HHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 7999999999999999999997642211111233456789999999996 47899999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 150 lllLD 154 (232)
T PRK10771 150 ILLLD 154 (232)
T ss_pred EEEEe
Confidence 99999
No 168
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3e-29 Score=264.25 Aligned_cols=158 Identities=27% Similarity=0.425 Sum_probs=134.7
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc--
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~-- 698 (800)
+|+++|+++.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 3 IIEIENFSAYYGE------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred eEEEEeeEEEeCC------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 6899999999963 4699999999999999999999999999999999999874 89999999998853
Q ss_pred -cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHH
Q 003716 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 -~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRL 774 (800)
.....++.+||+||++.+++ +|++||+.+.....+.. ....++.++++++.+++.+ ....++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 77 LDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred hhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH
Confidence 12345678999999999888 89999998765444432 2345567888999999852 1247899999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|++++||
T Consensus 156 ~la~al~~~p~llllD 171 (250)
T PRK14262 156 CIARALAVEPEVILLD 171 (250)
T ss_pred HHHHHHhCCCCEEEEe
Confidence 9999999999999999
No 169
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.96 E-value=7.5e-29 Score=272.16 Aligned_cols=165 Identities=22% Similarity=0.367 Sum_probs=139.0
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---cceEEECCeecCcc-
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTD- 699 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt---sG~I~i~G~~i~~~- 699 (800)
...++++||++.|+.+.+ ...||+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|+++|+++...
T Consensus 10 ~~~L~i~~l~~~~~~~~~--~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDG--DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred CceEEEeCeEEEEecCCC--CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 357899999999964322 357999999999999999999999999999999999999996 99999999998642
Q ss_pred H---HHhh-cceEEecCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCC-ccccccCCCCChhHH
Q 003716 700 M---DRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMK 771 (800)
Q Consensus 700 ~---~~~r-~~IGycpQ~~--~L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~~-~~~d~~~~~LSGG~K 771 (800)
. .+.| +.|||+||++ .+.+.+|+.+++......+ +....+..+++.++++.++|.+. ...++++++||||||
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence 2 2233 4799999997 6899999999987654443 34555667788999999999631 245789999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
||++|||||+.+|++||+|
T Consensus 168 QRv~IArAL~~~P~llilD 186 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIAD 186 (330)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 9999999999999999999
No 170
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.9e-29 Score=263.70 Aligned_cols=161 Identities=23% Similarity=0.376 Sum_probs=136.7
Q ss_pred CCCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecC
Q 003716 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIR 697 (800)
Q Consensus 623 ~~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~ 697 (800)
...+|+++|+++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 17 ~~~~l~~~nl~~~~~~------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 17 EEIALSTKDLHVYYGK------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred CCeEEEEeeEEEEECC------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 3457999999999963 569999999999999999999999999999999999986 58999999999985
Q ss_pred c---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHH
Q 003716 698 T---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMK 771 (800)
Q Consensus 698 ~---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~K 771 (800)
. .....++.+||+||++.+++ .|++||+.+.....+. .+.+.+++++++++.++|.+ .+..++++++||||||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 91 RKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQ 169 (267)
T ss_pred cccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHH
Confidence 3 23456788999999998887 5999999875444343 23345667889999999852 1357899999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
||++|||||+.+|++++||
T Consensus 170 qrl~laral~~~p~lllLD 188 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMD 188 (267)
T ss_pred HHHHHHHHHhcCCCEEEEe
Confidence 9999999999999999999
No 171
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.96 E-value=3.7e-29 Score=288.93 Aligned_cols=158 Identities=23% Similarity=0.325 Sum_probs=137.0
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-H-HH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~-~~ 702 (800)
.+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++... . ..
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 76 (501)
T PRK10762 3 ALLQLKGIDKAFPG------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSS 76 (501)
T ss_pred ceEEEeeeEEEeCC------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 46899999999963 5699999999999999999999999999999999999999999999999998532 2 22
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk----g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
.++.+||+||++.+++.+|++|++.+....+ ..+..+.+++++++++.++|. +..++++++||||||||++||+
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 77 QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR--FSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred HhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC--CCccCchhhCCHHHHHHHHHHH
Confidence 3567999999999999999999998753322 122344556789999999997 3789999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+++|||
T Consensus 155 al~~~p~lllLD 166 (501)
T PRK10762 155 VLSFESKVIIMD 166 (501)
T ss_pred HHhcCCCEEEEe
Confidence 999999999999
No 172
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9.6e-29 Score=260.51 Aligned_cols=159 Identities=26% Similarity=0.397 Sum_probs=134.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC--CC---CcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RT---TSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~--~p---tsG~I~i~G~~i~~- 698 (800)
.+++++|++|.|++ +.+++++||+|++||++||+||||||||||+++|+|+. +| ++|+|+++|+++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14239 4 PILQVSDLSVYYNK------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSP 77 (252)
T ss_pred ceEEEEeeEEEECC------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCc
Confidence 36899999999963 46999999999999999999999999999999999985 46 59999999999853
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~-~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.+++ +|++||+.+....++... ...+++++++++.+++.+ .+..++.+.+||||||||
T Consensus 78 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 78 RTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred ccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 22345678999999999887 899999987655445432 334567888999998742 125688999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
+++|+||+.+|+++|||
T Consensus 157 v~laral~~~p~llllD 173 (252)
T PRK14239 157 VCIARVLATSPKIILLD 173 (252)
T ss_pred HHHHHHHhcCCCEEEEc
Confidence 99999999999999999
No 173
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=6.3e-29 Score=255.88 Aligned_cols=148 Identities=25% Similarity=0.382 Sum_probs=128.2
Q ss_pred EeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-----cHHHhh
Q 003716 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DMDRIY 704 (800)
Q Consensus 630 ~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-----~~~~~r 704 (800)
-+|+|+|++ +.+ |+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 4 ~~l~~~~~~------~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 4 VDIEKRLPD------FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred eeeeEecCC------eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 499999974 334 99999999 9999999999999999999999999999999999998753 123456
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
+.+||+||++.+++.+|++||+.+..... .....+++++++++.+++. +..++++.+||||||||++||+||+.+|
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLD--HLLNRYPAQLSGGEKQRVALARALAAQP 150 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCH--hHhhcCcccCCHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999998754322 2233456788999999996 4789999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
++++||
T Consensus 151 ~llllD 156 (214)
T cd03297 151 ELLLLD 156 (214)
T ss_pred CEEEEc
Confidence 999999
No 174
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.96 E-value=6.5e-29 Score=258.01 Aligned_cols=159 Identities=27% Similarity=0.377 Sum_probs=135.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCcceEEECCeecCccHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~---ptsG~I~i~G~~i~~~~~~ 702 (800)
.+.++|++++|++.+ ..+.+++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++.. ..
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~--~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWN--KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP--DQ 78 (226)
T ss_pred cceeecceeeeecCc--cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh--HH
Confidence 467899999997532 13679999999999999999999999999999999999999 999999999998853 35
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC---CchhHHHHHHH-HHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL---KGPALTQAVEE-SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~---~~~~~~~~v~~-~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
.++.+||+||++.+++.+|++||+.+.....+. ......+.+++ .++.+++. +..++.+++||||||||+++|+
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~lar 156 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT--RIGGNLVKGISGGERRRVSIAV 156 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcch--hhhcccccCcCHHHHHHHHHHH
Confidence 678899999999999999999999976544321 12222334555 89999996 4778999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|++++||
T Consensus 157 al~~~p~illlD 168 (226)
T cd03234 157 QLLWDPKVLILD 168 (226)
T ss_pred HHHhCCCEEEEe
Confidence 999999999999
No 175
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1e-28 Score=260.80 Aligned_cols=160 Identities=25% Similarity=0.372 Sum_probs=135.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~--p---tsG~I~i~G~~i~~ 698 (800)
..+|+++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+.+ | ++|+|.++|+++..
T Consensus 4 ~~~i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 4 EIILSTKNLNLWYGE------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred cceEEEeeeEEEECC------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 347999999999963 469999999999999999999999999999999999976 3 48999999999864
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~Kr 772 (800)
...+.++.+||+||++.+++. |++||+.+..+.++.. ..+.++.+.++++.+++.+ .+..++++.+|||||||
T Consensus 78 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred cccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHH
Confidence 234567789999999999885 9999999766555432 2344567888899988842 12468999999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|+++|+||+.+|+++|||
T Consensus 157 rv~laral~~~p~lllLD 174 (253)
T PRK14261 157 RLCIARTLAVNPEVILMD 174 (253)
T ss_pred HHHHHHHHhcCCCEEEEe
Confidence 999999999999999999
No 176
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.2e-28 Score=259.86 Aligned_cols=159 Identities=21% Similarity=0.332 Sum_probs=135.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----cceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt-----sG~I~i~G~~i~~- 698 (800)
+.++++|+++.|++ +.+++++||+|++||++||+|+||||||||+++|+|+++|+ +|+|+++|.++..
T Consensus 3 ~~l~~~~l~~~~~~------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~ 76 (251)
T PRK14249 3 PKIKIRGVNFFYHK------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSP 76 (251)
T ss_pred ceEEEEEEEEEECC------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccc
Confidence 46899999999963 46999999999999999999999999999999999999997 6999999998853
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.+++. |++||+.+....++.. .++.++.++++++.+++.+ .+..++.+.+||||||||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 77 NLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQR 155 (251)
T ss_pred ccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHH
Confidence 234567889999999998875 9999998765544433 2334566788888888742 135789999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++|||||+.+|++++||
T Consensus 156 v~laral~~~p~lllLD 172 (251)
T PRK14249 156 LCIARVLAIEPEVILMD 172 (251)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 99999999999999999
No 177
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.5e-29 Score=287.83 Aligned_cols=158 Identities=20% Similarity=0.299 Sum_probs=137.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CcceEEECCeecCcc-H-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRTD-M- 700 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p--tsG~I~i~G~~i~~~-~- 700 (800)
.+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++| ++|+|+++|+++... .
T Consensus 4 ~~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 77 (506)
T PRK13549 4 YLLEMKNITKTFGG------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIR 77 (506)
T ss_pred ceEEEeeeEEEeCC------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHH
Confidence 47999999999963 4699999999999999999999999999999999999996 899999999998642 2
Q ss_pred HHhhcceEEecCCCCCCCCCCHHHHHHHHhhhc--C-CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHH
Q 003716 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK--N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 701 ~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk--g-~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA 777 (800)
+..++.+||+||++.+++.+|++||+.+....+ + .+.++..++++++++.+++. +..++++++||||||||++||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 78 DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD--INPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred HHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC--CCcccchhhCCHHHHHHHHHH
Confidence 234577999999999999999999998764432 2 23344566789999999996 478999999999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
+||+.+|+++|||
T Consensus 156 ~al~~~p~lllLD 168 (506)
T PRK13549 156 KALNKQARLLILD 168 (506)
T ss_pred HHHhcCCCEEEEe
Confidence 9999999999999
No 178
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.1e-28 Score=260.04 Aligned_cols=159 Identities=25% Similarity=0.423 Sum_probs=134.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~- 698 (800)
++|+++|+++.|++ +.+++++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 3 NIISAKDVHLSYGN------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred ceEEEEeeEEEECC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 36899999999963 469999999999999999999999999999999999997 489999999998853
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~-~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||++|++.+++ .|++||+.+.....+... +..++.++++++.+++.. .+..++++.+||||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 77 KMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred cchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHH
Confidence 23345778999999999886 799999987554444332 334567888999999841 124688999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++|||||+.+|+++|||
T Consensus 156 ~~laral~~~p~llllD 172 (251)
T PRK14251 156 ICIARALAVRPKVVLLD 172 (251)
T ss_pred HHHHHHHhcCCCEEEec
Confidence 99999999999999999
No 179
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=2.6e-29 Score=244.84 Aligned_cols=161 Identities=22% Similarity=0.332 Sum_probs=146.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc----HH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~----~~ 701 (800)
.|++++++|.-+... ....+|++|+|.|++||-++|+||+|||||||+-+++|+..|++|+|.+.|+++.+- ..
T Consensus 6 ii~~~~l~ktvg~~~--~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA 83 (228)
T COG4181 6 IIEVHHLSKTVGQGE--GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83 (228)
T ss_pred eeehhhhhhhhcCCC--cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHH
Confidence 688999999997643 357899999999999999999999999999999999999999999999999998652 22
Q ss_pred Hhh-cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 702 RIY-TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 702 ~~r-~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
..| +++|+++|...|.|+||..||+..-..++|-...+....+.+.|+.+||. +..+.++++||||++|||+||||+
T Consensus 84 ~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg--~Rl~HyP~qLSGGEQQRVAiARAf 161 (228)
T COG4181 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLG--KRLTHYPAQLSGGEQQRVALARAF 161 (228)
T ss_pred HhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcc--cccccCccccCchHHHHHHHHHHh
Confidence 333 67999999999999999999999999999877777788899999999997 478999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+..|+|+|-|
T Consensus 162 a~~P~vLfAD 171 (228)
T COG4181 162 AGRPDVLFAD 171 (228)
T ss_pred cCCCCEEecc
Confidence 9999999999
No 180
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.7e-29 Score=274.37 Aligned_cols=148 Identities=21% Similarity=0.343 Sum_probs=129.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-----H
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----M 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-----~ 700 (800)
+|++ ||+|.|++ +. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 1 ~l~~-~l~k~~~~------~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~ 71 (352)
T PRK11144 1 MLEL-NFKQQLGD------LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL 71 (352)
T ss_pred CeEE-EEEEEeCC------EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccc
Confidence 3667 99999963 22 3 89999999999999999999999999999999999999999999988531 2
Q ss_pred HHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 701 ~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
...++.+||+||+..+++++|++||+.+... ...+++++++++.++|. +..++++++||||||||++|||||
T Consensus 72 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qRvalaraL 143 (352)
T PRK11144 72 PPEKRRIGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIE--PLLDRYPGSLSGGEKQRVAIGRAL 143 (352)
T ss_pred chhhCCEEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCc--hhhhCCcccCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999986422 12346788999999997 478999999999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+.+|+++|||
T Consensus 144 ~~~p~llLLD 153 (352)
T PRK11144 144 LTAPELLLMD 153 (352)
T ss_pred HcCCCEEEEc
Confidence 9999999999
No 181
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.3e-28 Score=259.60 Aligned_cols=159 Identities=25% Similarity=0.377 Sum_probs=133.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----cceEEECCeecCc--
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT-- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt-----sG~I~i~G~~i~~-- 698 (800)
+++++|++|.|++ +.+++|+||+|++||++||+|+||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 4 LLSAQDVNIYYGD------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEeeeEEEECC------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 6889999999963 56999999999999999999999999999999999999874 8999999999853
Q ss_pred -cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHH
Q 003716 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 -~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRL 774 (800)
.....++.+||+||++.+++.+|++||+.+.....+.. .++..+.+++.++.+++.+ .+..++++++||||||||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRL 157 (252)
T ss_pred cCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHH
Confidence 23355778999999999999999999998754433332 2334566777788887631 1256889999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|++++||
T Consensus 158 ~laral~~~p~llllD 173 (252)
T PRK14272 158 CIARALAVEPEILLMD 173 (252)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
No 182
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.96 E-value=1.4e-28 Score=260.70 Aligned_cols=159 Identities=20% Similarity=0.270 Sum_probs=133.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCee-----cCcc
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-----IRTD 699 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~-----i~~~ 699 (800)
.+++++|+++.|++ +.+++++||++++||++||+|+||||||||+++|+|+++|++|+|.++|++ +...
T Consensus 5 ~~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~ 78 (258)
T PRK11701 5 PLLSVRGLTKLYGP------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL 78 (258)
T ss_pred ceEEEeeeEEEcCC------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccC
Confidence 46999999999963 469999999999999999999999999999999999999999999999998 6431
Q ss_pred -HHH----hhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHH
Q 003716 700 -MDR----IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771 (800)
Q Consensus 700 -~~~----~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~K 771 (800)
..+ .++.+||+||++ .+++.+|+.||+.+.....+. ...+.++.+.++++.+++.+ ...++.+.+||||||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 79 SEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA-ARIDDLPTTFSGGMQ 157 (258)
T ss_pred CHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh-hHHhCCCccCCHHHH
Confidence 211 245799999997 467788999998753222221 22345667889999999962 367899999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
||++|||||+.+|+|+|||
T Consensus 158 qrl~laral~~~p~llllD 176 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMD 176 (258)
T ss_pred HHHHHHHHHhcCCCEEEEc
Confidence 9999999999999999999
No 183
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.96 E-value=8.4e-29 Score=274.29 Aligned_cols=148 Identities=22% Similarity=0.355 Sum_probs=129.1
Q ss_pred eEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-----HHHhhc
Q 003716 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDRIYT 705 (800)
Q Consensus 631 nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-----~~~~r~ 705 (800)
||+|.|++ +. + ++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ....++
T Consensus 4 ~l~~~~~~------~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ 75 (354)
T TIGR02142 4 RFSKRLGD------FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75 (354)
T ss_pred EEEEEECC------EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhC
Confidence 89999963 33 4 99999999999999999999999999999999999999999999998532 224567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.+||+||++.+++.+|++||+.+..... ...+.+++++++++.++|. ++.++++.+|||||||||+|||||+.+|+
T Consensus 76 ~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 76 RIGYVFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIG--HLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred CeEEEecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999998754322 2334456789999999997 48899999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
++|||
T Consensus 152 lllLD 156 (354)
T TIGR02142 152 LLLMD 156 (354)
T ss_pred EEEEc
Confidence 99999
No 184
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.1e-28 Score=261.53 Aligned_cols=160 Identities=25% Similarity=0.381 Sum_probs=136.1
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~ 698 (800)
..+++++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 23 ~~~l~~~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 23 QTALEVRNLNLFYGD------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred CcEEEEEEEEEEECC------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 457999999999963 469999999999999999999999999999999999987 489999999999853
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~Kr 772 (800)
.....++.+||+||++.+++. |++||+.+....++.. ....+++++++++.+++.+ .+..++++.+|||||||
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQ 175 (272)
T ss_pred cccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHH
Confidence 234567889999999999886 9999998765554432 2334567888999999852 12568899999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++|||||+.+|++++||
T Consensus 176 rv~laral~~~p~lllLD 193 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLD 193 (272)
T ss_pred HHHHHHHHHCCCCEEEEe
Confidence 999999999999999999
No 185
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.5e-28 Score=258.76 Aligned_cols=158 Identities=24% Similarity=0.383 Sum_probs=134.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc--
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~-- 698 (800)
+++++|++|.|++ +.+++++||+|++||++||+||||||||||+++|+|+.+| ++|+|+++|.++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 3 KFNIENLDLFYGE------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred eEEEeccEEEECC------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 5889999999963 4699999999999999999999999999999999999986 59999999998842
Q ss_pred cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHHH
Q 003716 699 DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 699 ~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRLs 775 (800)
.....++.+||+||++.+++ .|++||+.+.....+.. ....++++++.++.+++.+ .+..++++.+||||||||++
T Consensus 77 ~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 77 DVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLC 155 (249)
T ss_pred chHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHH
Confidence 34456778999999999987 89999998754433332 2344567788899888742 13568899999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||+||+.+|+++|||
T Consensus 156 laral~~~p~llllD 170 (249)
T PRK14253 156 IARTIAMEPDVILMD 170 (249)
T ss_pred HHHHHHcCCCEEEEe
Confidence 999999999999999
No 186
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.1e-28 Score=259.59 Aligned_cols=159 Identities=28% Similarity=0.408 Sum_probs=134.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~- 698 (800)
..++++|+++.|++ +.+++|+||+|++||++||+|+||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (259)
T PRK14260 6 PAIKVKDLSFYYNT------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDP 79 (259)
T ss_pred ceEEEEEEEEEECC------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccc
Confidence 46899999999963 4699999999999999999999999999999999999985 58999999998853
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg-~~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.+++ +|++||+.+....++ .++.+..+.++++++.+++.+ .+..++.+.+||||||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 80 RININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQR 158 (259)
T ss_pred ccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 23455678999999999987 899999987544433 233445567888999998842 135788999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++|||||+.+|++++||
T Consensus 159 v~laral~~~p~lllLD 175 (259)
T PRK14260 159 LCIARALAIKPKVLLMD 175 (259)
T ss_pred HHHHHHHhcCCCEEEEc
Confidence 99999999999999999
No 187
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1e-28 Score=252.78 Aligned_cols=138 Identities=22% Similarity=0.258 Sum_probs=122.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCcceEEECCeecCccHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~---ptsG~I~i~G~~i~~~~~~ 702 (800)
.+.++||+|.|+.+. .++.+++++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++......
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~ 80 (202)
T cd03233 3 TLSWRNISFTTGKGR--SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK 80 (202)
T ss_pred eEEEEccEEEeccCC--CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhh
Confidence 467999999998642 24679999999999999999999999999999999999999 8999999999998654445
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
.++.+||+||++.+++.+|++||+.+..... .++++.+||||||||+++|+||+.
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALRCK-------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhhhhc-------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 6778999999999999999999998653211 356788999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 136 ~p~llllD 143 (202)
T cd03233 136 RASVLCWD 143 (202)
T ss_pred CCCEEEEc
Confidence 99999999
No 188
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.1e-28 Score=285.47 Aligned_cols=158 Identities=23% Similarity=0.257 Sum_probs=136.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HH-H
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-R 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~-~ 702 (800)
.+++++|++|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... .. .
T Consensus 4 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~ 77 (510)
T PRK09700 4 PYISMAGIGKSFGP------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLA 77 (510)
T ss_pred ceEEEeeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHH
Confidence 46899999999963 4699999999999999999999999999999999999999999999999998642 22 2
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhh----hcCC---CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGR----LKNL---KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~----lkg~---~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLs 775 (800)
.++.+||+||++.+++.+|++||+.+... ..+. +..+..++++++++.++|. +..++++++|||||||||+
T Consensus 78 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 78 AQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK--VDLDEKVANLSISHKQMLE 155 (510)
T ss_pred HHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC--CCcccchhhCCHHHHHHHH
Confidence 34679999999999999999999976321 1222 2234566789999999997 4789999999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||+||+.+|+|+|||
T Consensus 156 ia~al~~~p~lllLD 170 (510)
T PRK09700 156 IAKTLMLDAKVIIMD 170 (510)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
No 189
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.8e-28 Score=257.13 Aligned_cols=159 Identities=25% Similarity=0.404 Sum_probs=133.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~--p---tsG~I~i~G~~i~~- 698 (800)
.+++++|++|.|++ +.+++++||+|++||++||+|+||||||||+++|+|+.+ | ++|+|+++|+++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14255 4 KIITSSDVHLFYGK------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP 77 (252)
T ss_pred ceEEEEeEEEEECC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccc
Confidence 47899999999963 469999999999999999999999999999999999875 5 59999999998853
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~-~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
+....++.+||+||++.+++ .|++||+.+....++... +..++++.+.++.+++.. .+..++.+++||||||||
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 78 NEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQR 156 (252)
T ss_pred cccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHH
Confidence 23455678999999999888 699999987655444332 233456778888887631 135688999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++||+||+.+|+++|||
T Consensus 157 v~laral~~~p~llllD 173 (252)
T PRK14255 157 VCIARVLAVKPDVILLD 173 (252)
T ss_pred HHHHHHHhcCCCEEEEc
Confidence 99999999999999999
No 190
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.8e-28 Score=269.22 Aligned_cols=163 Identities=20% Similarity=0.213 Sum_probs=133.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC----CCcceEEECCeecCc-cH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR----TTSGTAYVQGLDIRT-DM 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~----ptsG~I~i~G~~i~~-~~ 700 (800)
+|+++||+|.|+.+++ .+.||+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|+++.. ..
T Consensus 3 ~L~v~~l~~~y~~~~~--~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 3 LLDIRNLTIEFKTSDG--WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred eEEEeeeEEEEeCCCC--CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 6899999999964322 3579999999999999999999999999999999999997 589999999999854 22
Q ss_pred HH---h-hcceEEecCCCC--CCCCCCHHHHHHHHhhh---cCC---CchhHHHHHHHHHHHcCCCCC-ccccccCCCCC
Q 003716 701 DR---I-YTSMGVCPQEDL--LWETLTGREHLLFYGRL---KNL---KGPALTQAVEESLKSVNLFHG-GVADKQAGKYS 767 (800)
Q Consensus 701 ~~---~-r~~IGycpQ~~~--L~~~LTv~E~L~~~~~l---kg~---~~~~~~~~v~~~L~~l~L~~~-~~~d~~~~~LS 767 (800)
.+ . ++.|||+||++. +.+.+|+.+++...... ++. ...+.++++.++|+.++|.+. +..++++.+||
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 22 2 347999999975 67889999999753221 111 113446678999999999631 24689999999
Q ss_pred hhHHHHHHHHHHHcCCCcEEEEc
Q 003716 768 GGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 768 GG~KrRLsiA~ALig~P~vlLLD 790 (800)
|||||||+||+||+.+|++||||
T Consensus 161 gG~~QRv~iArAL~~~P~llilD 183 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIAD 183 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999
No 191
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.3e-28 Score=263.31 Aligned_cols=160 Identities=26% Similarity=0.363 Sum_probs=134.6
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~ 698 (800)
.+.|+++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 37 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 37 KPHVVAKNFSIYYGE------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred ceEEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 457899999999963 459999999999999999999999999999999999864 499999999998853
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~Kr 772 (800)
.....++.+||+||++.+++. |++||+.+....++.. ....++.+.++++.+++.+ .+..++++.+|||||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred cccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHH
Confidence 223457789999999998875 9999999765544443 2334567888899988741 13568899999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++|||||+.+|+++|||
T Consensus 190 rv~LAraL~~~p~lllLD 207 (286)
T PRK14275 190 RLCVARTLAVEPEILLLD 207 (286)
T ss_pred HHHHHHHHhcCCCEEEEe
Confidence 999999999999999999
No 192
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=1.8e-28 Score=283.87 Aligned_cols=155 Identities=24% Similarity=0.349 Sum_probs=136.0
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~ 702 (800)
.++|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..+
T Consensus 9 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 9 PPLLCARSISKQYSG------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAK 82 (510)
T ss_pred CceEEEEeEEEEeCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH
Confidence 347999999999963 4699999999999999999999999999999999999999999999999998642 222
Q ss_pred h-hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 I-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~-r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
. ++.+||+||++.+++.+|++||+.+.... ..+.+++++++++.++|. +..++++++|||||||||+||+||+
T Consensus 83 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQ--LDLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred HHhCCEEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCC--ccccCChhhCCHHHHHHHHHHHHHH
Confidence 2 35799999999999999999999874321 234456789999999997 4789999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 157 ~~p~lllLD 165 (510)
T PRK15439 157 RDSRILILD 165 (510)
T ss_pred cCCCEEEEE
Confidence 999999999
No 193
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=2e-28 Score=249.00 Aligned_cols=148 Identities=20% Similarity=0.247 Sum_probs=128.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+++++|++|.|++ +.+++ +||+|++||++||+|+||||||||+++|+|+.+|++|+|+++|.++... . ++
T Consensus 1 ~l~~~~l~~~~~~------~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~-~--~~ 70 (195)
T PRK13541 1 MLSLHQLQFNIEQ------KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI-A--KP 70 (195)
T ss_pred CeEEEEeeEEECC------cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh-h--hh
Confidence 3789999999953 34555 9999999999999999999999999999999999999999999988532 1 35
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.++|++|+..+++.+|++||+.+....++ ..+.++++++.+++. +..++++++||||||||+++|+|++.+|+
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLH--DLLDEKCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCH--hhhccChhhCCHHHHHHHHHHHHHhcCCC
Confidence 69999999888888999999987654432 244678889999996 47899999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+++||
T Consensus 144 ~lllD 148 (195)
T PRK13541 144 LWLLD 148 (195)
T ss_pred EEEEe
Confidence 99999
No 194
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.4e-28 Score=289.11 Aligned_cols=166 Identities=26% Similarity=0.324 Sum_probs=140.0
Q ss_pred CCcEEEEeEEEEcCCCCC-----CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDG-----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~-----~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~ 698 (800)
.++|+++||+|.|+.+.+ ...+.+|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|+++|+++..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 357999999999963211 012469999999999999999999999999999999999999999999999999854
Q ss_pred c----HHHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHH
Q 003716 699 D----MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771 (800)
Q Consensus 699 ~----~~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~K 771 (800)
. ....++.|||+||++ .+++.+|+.|++.+....++. ...+..++++++|+.++|.. +..++++++||||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~-~~~~~~~~~LSgGqr 469 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP-EHAWRYPHEFSGGQR 469 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCH-HHhhCCcccCCHHHH
Confidence 2 223467899999996 589999999999875544443 23455678899999999952 368999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
|||+|||||+.+|++||||
T Consensus 470 QRv~iAraL~~~p~llllD 488 (623)
T PRK10261 470 QRICIARALALNPKVIIAD 488 (623)
T ss_pred HHHHHHHHHhcCCCEEEEe
Confidence 9999999999999999999
No 195
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.96 E-value=2.5e-28 Score=261.26 Aligned_cols=157 Identities=22% Similarity=0.251 Sum_probs=133.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--------cceEEECCeecC
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT--------SGTAYVQGLDIR 697 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt--------sG~I~i~G~~i~ 697 (800)
+|+++||+|.|++ +.+++++||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++.
T Consensus 1 ml~~~nl~~~~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 1 MLTADHLHVARRH------RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred CeEEEEEEEEECC------EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence 4789999999963 46999999999999999999999999999999999999998 999999999985
Q ss_pred c-cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhh----cCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHH
Q 003716 698 T-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL----KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 772 (800)
Q Consensus 698 ~-~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~l----kg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~Kr 772 (800)
. ...+.++.++|+||++.++..+|++||+.+.... .+....+..+.++++++.+++. +..++++.+|||||||
T Consensus 75 ~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~q 152 (272)
T PRK13547 75 AIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT--ALVGRDVTTLSGGELA 152 (272)
T ss_pred cCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHH
Confidence 4 3345566799999998766679999999874211 1111233456788999999997 4789999999999999
Q ss_pred HHHHHHHHc---------CCCcEEEEc
Q 003716 773 RLSVAISLI---------GNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALi---------g~P~vlLLD 790 (800)
|++||+||+ .+|+++|||
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLD 179 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLD 179 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEc
Confidence 999999999 599999999
No 196
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.6e-28 Score=259.80 Aligned_cols=158 Identities=22% Similarity=0.368 Sum_probs=132.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~- 698 (800)
++|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 9 ~~l~i~~v~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 82 (264)
T PRK14243 9 TVLRTENLNVYYGS------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82 (264)
T ss_pred eEEEEeeeEEEECC------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccc
Confidence 47999999999963 469999999999999999999999999999999999986 489999999998842
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRL 774 (800)
.....++.+||+||++.+++. |++||+.+....++.. .+.+++++++++.+++.+ .+..++++.+||||||||+
T Consensus 83 ~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 83 DVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred ccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHH
Confidence 234567789999999988884 9999998765444332 234556777888888742 1256889999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+++|||
T Consensus 161 ~laral~~~p~lllLD 176 (264)
T PRK14243 161 CIARAIAVQPEVILMD 176 (264)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
No 197
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.2e-28 Score=258.25 Aligned_cols=160 Identities=24% Similarity=0.388 Sum_probs=135.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECC------eecCc
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG------LDIRT 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G------~~i~~ 698 (800)
+++.++|++|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++..
T Consensus 9 ~~i~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~ 82 (257)
T PRK14246 9 DVFNISRLYLYIND------KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQ 82 (257)
T ss_pred hheeeeeEEEecCC------ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCccccc
Confidence 57999999999974 5699999999999999999999999999999999999999997777666 44432
Q ss_pred -cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHH
Q 003716 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 -~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRL 774 (800)
.....++.+||+||++.+++.+|++||+.+....++.. ..+..+.++++++.+++.+ .+..++.+.+||||||||+
T Consensus 83 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl 162 (257)
T PRK14246 83 IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRL 162 (257)
T ss_pred CCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHH
Confidence 33456788999999999999999999998865444432 3455567899999999852 0256889999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|++++||
T Consensus 163 ~laral~~~P~llllD 178 (257)
T PRK14246 163 TIARALALKPKVLLMD 178 (257)
T ss_pred HHHHHHHcCCCEEEEc
Confidence 9999999999999999
No 198
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4e-28 Score=260.15 Aligned_cols=159 Identities=23% Similarity=0.340 Sum_probs=134.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~- 698 (800)
..++++||+|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 20 ~~l~i~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 93 (276)
T PRK14271 20 PAMAAVNLTLGFAG------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93 (276)
T ss_pred cEEEEeeEEEEECC------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc
Confidence 47899999999963 5799999999999999999999999999999999999986 69999999998854
Q ss_pred -cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCC--ccccccCCCCChhHHHHH
Q 003716 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 -~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg-~~~~~~~~~v~~~L~~l~L~~~--~~~d~~~~~LSGG~KrRL 774 (800)
.....++.++|+||++.+++ +|++||+.+.....+ ....+..+.+.++++.+++.+. +..++.+.+||||||||+
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 94 RDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred chhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 23356778999999999888 799999987543322 2334455667888999998521 235788999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+++|||
T Consensus 173 ~LAral~~~p~lllLD 188 (276)
T PRK14271 173 CLARTLAVNPEVLLLD 188 (276)
T ss_pred HHHHHHhcCCCEEEEc
Confidence 9999999999999999
No 199
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.9e-28 Score=257.86 Aligned_cols=159 Identities=23% Similarity=0.366 Sum_probs=135.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----cceEEECCeecCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt-----sG~I~i~G~~i~~- 698 (800)
..|+++|++|.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 6 ~~l~~~nl~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~ 79 (261)
T PRK14258 6 PAIKVNNLSFYYDT------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER 79 (261)
T ss_pred ceEEEeeEEEEeCC------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc
Confidence 36899999999963 36999999999999999999999999999999999999986 8999999998742
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
....+++.++|+||+..+++ +|++||+.+.....+. +..+..+.+.++++.+++.+ .+..++.+.+||||||||
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 80 RVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQR 158 (261)
T ss_pred ccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 23456778999999998888 8999999876544443 33344567889999999842 125688999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
+++|+||+.+|+|++||
T Consensus 159 v~laral~~~p~vllLD 175 (261)
T PRK14258 159 LCIARALAVKPKVLLMD 175 (261)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 99999999999999999
No 200
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.96 E-value=9.5e-29 Score=258.25 Aligned_cols=155 Identities=23% Similarity=0.413 Sum_probs=125.2
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
++++|+++.|++. .+.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (237)
T cd03252 1 ITFEHVRFRYKPD----GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 (237)
T ss_pred CEEEEEEEecCCC----CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh
Confidence 4689999999641 2469999999999999999999999999999999999999999999999998854 3345677
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCccccccCCCCChhHHHHHHHHH
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~-----~v~~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
.+||+||++.+++ .|++||+.+... +.......+ .+++.++.+ ++. ...++++.+|||||||||+|||
T Consensus 77 ~i~~~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~LSgG~~qrv~lar 151 (237)
T cd03252 77 QVGVVLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYD--TIVGEQGAGLSGGQRQRIAIAR 151 (237)
T ss_pred cEEEEcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCccccc--chhhcCCCcCCHHHHHHHHHHH
Confidence 8999999998875 699999987432 212111111 123445555 443 3568899999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+++|||
T Consensus 152 al~~~p~llllD 163 (237)
T cd03252 152 ALIHNPRILIFD 163 (237)
T ss_pred HHhhCCCEEEEe
Confidence 999999999999
No 201
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.5e-28 Score=282.13 Aligned_cols=158 Identities=22% Similarity=0.295 Sum_probs=137.7
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc--cHHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~--~~~~ 702 (800)
++++++||+|.|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. ....
T Consensus 3 ~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 76 (501)
T PRK11288 3 PYLSFDGIGKTFPG------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAA 76 (501)
T ss_pred ceEEEeeeEEEECC------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHH
Confidence 46899999999963 469999999999999999999999999999999999999999999999999853 2234
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhh--hcC-CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGR--LKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~--lkg-~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
.++.|||+||++.+++.+|++||+.+... ..+ ....+.+++++++++.++|. +..++++.+||||||||++||+|
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 77 LAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD--IDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred HhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC--CCcCCchhhCCHHHHHHHHHHHH
Confidence 56789999999999999999999987432 122 23345567889999999996 36799999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|+|+|||
T Consensus 155 l~~~p~lllLD 165 (501)
T PRK11288 155 LARNARVIAFD 165 (501)
T ss_pred HHhCCCEEEEc
Confidence 99999999999
No 202
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.1e-28 Score=259.22 Aligned_cols=160 Identities=23% Similarity=0.367 Sum_probs=133.2
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~ 698 (800)
..+++++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 22 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 95 (271)
T PRK14238 22 KVVFDTQNLNLWYGE------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95 (271)
T ss_pred ceEEEEeeeEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc
Confidence 457999999999963 459999999999999999999999999999999999997 699999999999842
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~-~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~Kr 772 (800)
.....++.+||+||++.+++. |++||+.+..+.++... ...++.+.++++.+++.+ .+..++++.+|||||||
T Consensus 96 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 96 KSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred ccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHH
Confidence 234557789999999988874 99999987554444322 233456777888775421 13568899999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++||+||+.+|+++|||
T Consensus 175 rv~laraL~~~p~lllLD 192 (271)
T PRK14238 175 RLCIARCLAIEPDVILMD 192 (271)
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 999999999999999999
No 203
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2e-28 Score=255.10 Aligned_cols=155 Identities=23% Similarity=0.431 Sum_probs=127.4
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
++++|+++.|+++ ++.+++++||++++||++||+||||||||||+++|+|+++|++|+|+++|+++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (234)
T cd03251 1 VEFKNVTFRYPGD----GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76 (234)
T ss_pred CEEEEEEEEeCCC----CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHh
Confidence 4689999999642 2369999999999999999999999999999999999999999999999998754 3445677
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCccccccCCCCChhHHHHHHHHH
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~-----~v~~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
.+||+||++.+++ .|++||+.+..... ...+..+ .+++.++.+ ++. ...++++.+||||||||++||+
T Consensus 77 ~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~~~LS~G~~qrv~la~ 151 (234)
T cd03251 77 QIGLVSQDVFLFN-DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYD--TVIGERGVKLSGGQRQRIAIAR 151 (234)
T ss_pred hEEEeCCCCeecc-ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcc--eeeccCCCcCCHHHHHHHHHHH
Confidence 8999999998887 69999998754321 1122221 235556665 554 3678889999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|++++||
T Consensus 152 al~~~p~lllLD 163 (234)
T cd03251 152 ALLKDPPILILD 163 (234)
T ss_pred HHhcCCCEEEEe
Confidence 999999999999
No 204
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.96 E-value=4.5e-28 Score=258.51 Aligned_cols=164 Identities=24% Similarity=0.322 Sum_probs=136.4
Q ss_pred cEEEEeEEEEcCCC---CCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc---
Q 003716 626 AIISDNLRKIYPGR---DGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--- 699 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~---~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--- 699 (800)
+|+++||+|.|++. .++.++.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 58999999999631 000135799999999999999999999999999999999999999999999999988532
Q ss_pred -HHHhhcceEEecCCC--CCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHH
Q 003716 700 -MDRIYTSMGVCPQED--LLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 700 -~~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~-lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLs 775 (800)
....++.+||+||++ .+++..|+.|++.+... ..+....+..+.++++++.+++.+ ...++++.+||||||||++
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD-SVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh-hHhhCCCccCChHHHHHHH
Confidence 134567899999997 46778999999876432 233444445567899999999952 3679999999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||+||+.+|+++|||
T Consensus 162 laral~~~p~lllLD 176 (268)
T PRK10419 162 LARALAVEPKLLILD 176 (268)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
No 205
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.7e-28 Score=287.46 Aligned_cols=165 Identities=21% Similarity=0.311 Sum_probs=139.3
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-----
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----- 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~----- 698 (800)
.++|+++||++.|++.. +.+.+++|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.++..
T Consensus 10 ~~~l~v~~l~~~y~~~~--~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQ--QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred CceEEEeceEEEecCCC--CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccc
Confidence 35799999999996421 13579999999999999999999999999999999999999999999999975421
Q ss_pred ------c---HHHhh-cceEEecCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCC-CccccccCC
Q 003716 699 ------D---MDRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH-GGVADKQAG 764 (800)
Q Consensus 699 ------~---~~~~r-~~IGycpQ~~--~L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~-~~~~d~~~~ 764 (800)
. ..+.+ +.|||++|++ .+++.+||+||+.+..+.+ +.+..+.+++++++++.+||.+ +...++++.
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 1 11233 4799999997 6889999999999865553 5666667788999999999953 135799999
Q ss_pred CCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 765 KYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 765 ~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+|||||||||+||+||+.+|+|||||
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllD 193 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIAD 193 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 99999999999999999999999999
No 206
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.96 E-value=3.9e-28 Score=256.75 Aligned_cols=155 Identities=20% Similarity=0.218 Sum_probs=130.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CcceEEECCeecCccHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT----TSGTAYVQGLDIRTDMD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p----tsG~I~i~G~~i~~~~~ 701 (800)
.++++|++|.| + +.+++++||++++||+++|+|+||||||||+++|+|+++| ++|+|+++|+++.. .+
T Consensus 4 ~l~~~~l~~~~-~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~-~~ 75 (254)
T PRK10418 4 QIELRNIALQA-A------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP-CA 75 (254)
T ss_pred EEEEeCeEEEe-c------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc-cc
Confidence 68999999999 2 3599999999999999999999999999999999999999 99999999999853 22
Q ss_pred HhhcceEEecCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-ccccccCCCCChhHHHHHHHHH
Q 003716 702 RIYTSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 702 ~~r~~IGycpQ~~~--L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~-~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
..++.+||+||++. +.+.+|+.+++.+.....+... .++.++++++.++|.+. ...++.+.+||||||||++|||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 23467999999974 4566899999876554444322 24678899999999631 1468999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+++|||
T Consensus 154 al~~~p~lLlLD 165 (254)
T PRK10418 154 ALLCEAPFIIAD 165 (254)
T ss_pred HHhcCCCEEEEe
Confidence 999999999999
No 207
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.96 E-value=2.1e-28 Score=252.72 Aligned_cols=151 Identities=26% Similarity=0.438 Sum_probs=126.4
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
++++|++|.|+++ .+.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++.. .....++
T Consensus 3 l~~~~l~~~~~~~----~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (220)
T cd03245 3 IEFRNVSFSYPNQ----EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78 (220)
T ss_pred EEEEEEEEEcCCC----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHh
Confidence 7899999999642 2469999999999999999999999999999999999999999999999998753 2334567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCcccccc-----------CCCCChhHHHHH
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ-----------AGKYSGGMKRRL 774 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~-----------~~~LSGG~KrRL 774 (800)
.+||+||++.+++ .|++||+.+..... ..+.++++++.+++. +..++. +.+||||||||+
T Consensus 79 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~~~~~~~LSgG~~qrl 149 (220)
T cd03245 79 NIGYVPQDVTLFY-GTLRDNITLGAPLA------DDERILRAAELAGVT--DFVNKHPNGLDLQIGERGRGLSGGQRQAV 149 (220)
T ss_pred hEEEeCCCCcccc-chHHHHhhcCCCCC------CHHHHHHHHHHcCcH--HHHHhccccccceecCCCccCCHHHHHHH
Confidence 8999999998887 69999997643211 134566778888885 245554 469999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|++++||
T Consensus 150 ~la~al~~~p~llllD 165 (220)
T cd03245 150 ALARALLNDPPILLLD 165 (220)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
No 208
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.7e-28 Score=256.24 Aligned_cols=157 Identities=24% Similarity=0.379 Sum_probs=131.7
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc---
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT--- 698 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~--- 698 (800)
-+++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 6 ~~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 6 ASVKNLNLWYGS------KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEeeeEEEEECC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 368999999963 569999999999999999999999999999999999986 479999999998753
Q ss_pred cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHH
Q 003716 699 DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 ~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~--~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRL 774 (800)
....+++.+||+||++.+++. |++||+.+....++. ...+.++.++++++.+++.+ ....++.+.+||||||||+
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 223457789999999988886 999999875444443 22345567888999999953 1245788999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|+++|||
T Consensus 159 ~laral~~~p~llllD 174 (251)
T PRK14244 159 CIARAIAVKPTMLLMD 174 (251)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
No 209
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.96 E-value=1.4e-28 Score=255.17 Aligned_cols=159 Identities=19% Similarity=0.356 Sum_probs=131.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~ 702 (800)
..+++++|+++.|++++ .+.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....
T Consensus 9 ~~~l~~~~l~~~~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 85 (226)
T cd03248 9 KGIVKFQNVTFAYPTRP---DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKY 85 (226)
T ss_pred CceEEEEEEEEEeCCCC---CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHH
Confidence 46799999999997521 2469999999999999999999999999999999999999999999999998753 3344
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHH-----HHHHHHHHHc--CCCCCccccccCCCCChhHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT-----QAVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~-----~~v~~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLs 775 (800)
.++.+||+||++.+++ .|++||+.+..... ...+.. ..++++++.+ |+. ...++++.+||||||||++
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~gl~--~~~~~~~~~LSgG~~qrv~ 160 (226)
T cd03248 86 LHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC--SFECVKEAAQKAHAHSFISELASGYD--TEVGEKGSQLSGGQKQRVA 160 (226)
T ss_pred HHhhEEEEecccHHHh-hhHHHHhccccCCC--CHHHHHHHHHHcCcHHHHHhcccccc--chhhcCCCcCCHHHHHHHH
Confidence 5678999999998886 59999998643211 111111 1256778888 775 3678899999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||+||+.+|+++|||
T Consensus 161 laral~~~p~llllD 175 (226)
T cd03248 161 IARALIRNPQVLILD 175 (226)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
No 210
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.3e-28 Score=254.75 Aligned_cols=158 Identities=26% Similarity=0.416 Sum_probs=134.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc--
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT-- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~-- 698 (800)
.++++||++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|+++|+++..
T Consensus 3 ~l~~~~v~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 3 RIEVENLNTYFDD------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEEEEeEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 5889999999963 469999999999999999999999999999999999864 489999999999853
Q ss_pred -cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHH
Q 003716 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 -~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRL 774 (800)
.....++.+||+||++.+++. |++||+.+.....+.. .+..++++.++++.+++.+ .+..++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRL 155 (250)
T ss_pred ccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHH
Confidence 244567889999999999885 9999998754433322 3345677889999999842 1346889999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|++++||
T Consensus 156 ~laral~~~p~llllD 171 (250)
T PRK14266 156 CIARTIAVSPEVILMD 171 (250)
T ss_pred HHHHHHHcCCCEEEEc
Confidence 9999999999999999
No 211
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.96 E-value=4.5e-28 Score=255.74 Aligned_cols=159 Identities=22% Similarity=0.290 Sum_probs=130.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCee-----cCc-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-----IRT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~-----i~~- 698 (800)
++|+++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|++ +..
T Consensus 2 ~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 75 (253)
T TIGR02323 2 PLLQVSGLSKSYGG------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQL 75 (253)
T ss_pred ceEEEeeeEEEeCC------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccC
Confidence 36899999999963 468999999999999999999999999999999999999999999999987 532
Q ss_pred cHH----HhhcceEEecCCCC--CCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHH
Q 003716 699 DMD----RIYTSMGVCPQEDL--LWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771 (800)
Q Consensus 699 ~~~----~~r~~IGycpQ~~~--L~~~LTv~E~L~~~~~-lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~K 771 (800)
... ..++.+||++|++. +...+|+.|++.+... .......+.++.++++++.+++.+ ...++.+.+||||||
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 76 SEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP-TRIDDLPRAFSGGMQ 154 (253)
T ss_pred CHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh-hhhhcCchhcCHHHH
Confidence 111 12457999999974 5566799999865321 111112234567889999999962 378999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
||++|||||+.+|+++|||
T Consensus 155 qrv~laral~~~p~vlllD 173 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMD 173 (253)
T ss_pred HHHHHHHHHhcCCCEEEEc
Confidence 9999999999999999999
No 212
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=8.9e-28 Score=255.38 Aligned_cols=159 Identities=21% Similarity=0.290 Sum_probs=134.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~ 698 (800)
..++.++++++.|++ +.+++++||++++||++||+|+||||||||+++|+|+++| ++|+|+++|+++..
T Consensus 6 ~~~~~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 6 PIVMDCKLDKIFYGN------FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred CceEEEEeEEEEeCC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccc
Confidence 357899999999963 5799999999999999999999999999999999999986 79999999999853
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC--ccccccCCCCChhHHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~--~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.++ .+|++||+.+....++.. .+..+.++++++.+++.+. ...++++++||||||||
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 80 KGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred cccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 2234567899999999888 589999998765544332 3445678999999998531 24467889999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++|||||+.+|++++||
T Consensus 158 v~laral~~~p~llllD 174 (261)
T PRK14263 158 LCIARAIATEPEVLLLD 174 (261)
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 99999999999999999
No 213
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=8.6e-28 Score=257.23 Aligned_cols=159 Identities=21% Similarity=0.358 Sum_probs=132.6
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~ 698 (800)
..+|+++|+++.|++ +.+++++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 18 ~~~l~~~nl~~~~~~------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~ 91 (274)
T PRK14265 18 HSVFEVEGVKVFYGG------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYD 91 (274)
T ss_pred CceEEEeeEEEEeCC------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccc
Confidence 347999999999963 4699999999999999999999999999999999999863 69999999999853
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.+++. |+.||+.+....++.. ...++.++++++.+++.+ .+..++++.+||||||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 92 SQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQR 169 (274)
T ss_pred ccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHH
Confidence 223457789999999988875 9999998754444332 223456777888888741 135688999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++||+||+.+|+++|||
T Consensus 170 v~LAraL~~~p~lllLD 186 (274)
T PRK14265 170 LCIARAIAMKPDVLLMD 186 (274)
T ss_pred HHHHHHHhhCCCEEEEe
Confidence 99999999999999999
No 214
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.95 E-value=2.2e-28 Score=283.98 Aligned_cols=154 Identities=27% Similarity=0.470 Sum_probs=129.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..|+++||++.|++ ++.+|+|+||++++||.++|+||||||||||+|+|.|+++|++|+|.++|.|+++-.+..|
T Consensus 333 ~~I~~~~vsf~Y~~-----~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr 407 (529)
T TIGR02868 333 PTLELRDLSFGYPG-----SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELR 407 (529)
T ss_pred ceEEEEEEEEecCC-----CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHH
Confidence 35999999999974 2359999999999999999999999999999999999999999999999999975566688
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRLs 775 (800)
++|||+||++.+|+. |++||+.+.. + +..+++++++++..++.+ +....+...+||||||||++
T Consensus 408 ~~i~~V~Q~~~lF~~-TI~eNI~~g~-----~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRia 480 (529)
T TIGR02868 408 RRISVFAQDAHLFDT-TVRDNLRLGR-----P-DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLA 480 (529)
T ss_pred hheEEEccCcccccc-cHHHHHhccC-----C-CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHH
Confidence 999999999999987 9999998742 1 122455677777777642 01112344579999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
|||||+.+|+|++||
T Consensus 481 iARall~~~~iliLD 495 (529)
T TIGR02868 481 LARALLADAPILLLD 495 (529)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
No 215
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.6e-28 Score=252.39 Aligned_cols=155 Identities=22% Similarity=0.403 Sum_probs=124.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.++++|+++.|++ .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. .....+
T Consensus 2 ~l~~~~l~~~~~~-----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (229)
T cd03254 2 EIEFENVNFSYDE-----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLR 76 (229)
T ss_pred eEEEEEEEEecCC-----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHh
Confidence 3789999999963 2459999999999999999999999999999999999999999999999998854 344567
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCccccccCCCCChhHHHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~-----~v~~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsiA 777 (800)
+.+||+||++.+++. |++||+.++.... ...+..+ .+++.++.+ ++. ...++++.+||||||||++||
T Consensus 77 ~~i~~~~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~LS~G~~~rv~la 151 (229)
T cd03254 77 SMIGVVLQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYD--TVLGENGGNLSQGERQLLAIA 151 (229)
T ss_pred hhEEEecCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCccccc--CHhhcCCCcCCHHHHHHHHHH
Confidence 789999999988886 9999998753221 1111111 122333333 443 245777899999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
+||+.+|+++|||
T Consensus 152 ~al~~~p~llllD 164 (229)
T cd03254 152 RAMLRDPKILILD 164 (229)
T ss_pred HHHhcCCCEEEEe
Confidence 9999999999999
No 216
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=3e-28 Score=270.14 Aligned_cols=158 Identities=25% Similarity=0.363 Sum_probs=143.7
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecC--ccHHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--TDMDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~--~~~~~ 702 (800)
+.+++++++|+|++ .+|.++|||+|++|||.||||+||||||||+|||.|+++||+|+|+++|+.+. ...+.
T Consensus 3 ~~l~~~~itK~f~~------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA 76 (501)
T COG3845 3 PALEMRGITKRFPG------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDA 76 (501)
T ss_pred ceEEEeccEEEcCC------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHH
Confidence 57899999999984 78999999999999999999999999999999999999999999999999985 34566
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhh---cCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRL---KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~l---kg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
++..||++.||..|++.+||.||+.+...- ..+..++.+++++++.++.||. --.|+++.+||=|+||||.|-+|
T Consensus 77 ~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~--vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 77 IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLP--VDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCC--CCccceeecCCcchhHHHHHHHH
Confidence 778899999999999999999999986532 2345678889999999999997 35799999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|..+|++|+||
T Consensus 155 Lyr~a~iLILD 165 (501)
T COG3845 155 LYRGARLLILD 165 (501)
T ss_pred HhcCCCEEEEc
Confidence 99999999999
No 217
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.95 E-value=6.3e-28 Score=278.57 Aligned_cols=157 Identities=22% Similarity=0.400 Sum_probs=133.9
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CcceEEECCeecCcc-H-HH
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRTD-M-DR 702 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p--tsG~I~i~G~~i~~~-~-~~ 702 (800)
++++||+|.|++ +.+++++||++++||++||+||||||||||+++|+|+++| ++|+|+++|+++... . ..
T Consensus 2 l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTFGG------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEeCC------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 789999999963 4699999999999999999999999999999999999987 799999999998642 2 22
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhc--C--CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK--N--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk--g--~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
.++.+||+||++.+++.+|++||+.+..... + ...++..++++++++.++|.+ ...++++++|||||||||+||+
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDA-DNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCC-CcccCchhhCCHHHHHHHHHHH
Confidence 4567999999999999999999998754322 1 233445667899999999963 2236789999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+++|||
T Consensus 155 al~~~p~lllLD 166 (500)
T TIGR02633 155 ALNKQARLLILD 166 (500)
T ss_pred HHhhCCCEEEEe
Confidence 999999999999
No 218
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.6e-28 Score=280.76 Aligned_cols=160 Identities=26% Similarity=0.442 Sum_probs=131.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++||++.|+.| ++..+++|+||+|++||+++|+||||+||||+.++|-.++.|++|+|.+||+||++ +...+
T Consensus 464 G~IeF~~VsFaYP~R---p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR---PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred ceEEEEEeeeecCCC---CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHH
Confidence 469999999999986 46789999999999999999999999999999999999999999999999999986 66778
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHH-----HHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE-----ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~-----~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
|++||++-|+|.||.. |++||+.+... +.+.+++...++ +.+..+.-.-+..-+++..+||||||||++|||
T Consensus 541 r~~Ig~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIAR 617 (716)
T ss_pred HHHeeeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHH
Confidence 9999999999999997 99999996433 334344333322 222222211112334566689999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.||+|+|||
T Consensus 618 ALlr~P~VLILD 629 (716)
T KOG0058|consen 618 ALLRNPRVLILD 629 (716)
T ss_pred HHhcCCCEEEEe
Confidence 999999999999
No 219
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.95 E-value=7.2e-28 Score=257.40 Aligned_cols=157 Identities=21% Similarity=0.308 Sum_probs=128.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..++++|++|.|++ ++.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ...+
T Consensus 5 ~~l~~~~l~~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~--~~~~ 77 (272)
T PRK15056 5 AGIVVNDVTVTWRN-----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ--ALQK 77 (272)
T ss_pred ceEEEEeEEEEecC-----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH--hhcc
Confidence 46899999999963 2569999999999999999999999999999999999999999999999998742 1123
Q ss_pred cceEEecCCCCCC--CCCCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 705 TSMGVCPQEDLLW--ETLTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 705 ~~IGycpQ~~~L~--~~LTv~E~L~~~~~----lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
+.+||+||++.+. ...+++|++.+... ..+......++.++++++.++|. +..++++++||||||||++||+
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qrv~lar 155 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV--EFRHRQIGELSGGQKKRVFLAR 155 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCCh--hHhcCCcccCCHHHHHHHHHHH
Confidence 4699999997652 23478888764211 11112234456788899999997 4789999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|++++||
T Consensus 156 aL~~~p~llllD 167 (272)
T PRK15056 156 AIAQQGQVILLD 167 (272)
T ss_pred HHhcCCCEEEEe
Confidence 999999999999
No 220
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-27 Score=258.70 Aligned_cols=161 Identities=25% Similarity=0.388 Sum_probs=134.4
Q ss_pred CCCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecC
Q 003716 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIR 697 (800)
Q Consensus 623 ~~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~ 697 (800)
...+|.++||++.|++ +.+++++||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|.++.
T Consensus 42 ~~~~l~i~nl~~~~~~------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 42 GDAKLSVEDLDVYYGD------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred CCceEEEEEEEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4457999999999964 469999999999999999999999999999999999986 68999999999885
Q ss_pred c---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhc------------CCCc-hhHHHHHHHHHHHcCCCC--Cccc
Q 003716 698 T---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK------------NLKG-PALTQAVEESLKSVNLFH--GGVA 759 (800)
Q Consensus 698 ~---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk------------g~~~-~~~~~~v~~~L~~l~L~~--~~~~ 759 (800)
. .....++.+||+||++.+++ .|++||+.+....+ +... ...++.++++++.+++.+ .+..
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred cccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 3 23456778999999998887 49999998753321 1111 223567889999998842 1356
Q ss_pred cccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 760 DKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 760 d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
++++.+||||||||++||+||+.+|+|+|||
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLD 225 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMD 225 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 8899999999999999999999999999999
No 221
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.95 E-value=5.4e-28 Score=280.49 Aligned_cols=156 Identities=26% Similarity=0.343 Sum_probs=133.4
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCcceEEEC------------
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQ------------ 692 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~--~ptsG~I~i~------------ 692 (800)
|+++|++|.|++ +.+++|+||++++||++||+||||||||||+|+|+|++ +|++|+|+++
T Consensus 1 l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~ 74 (520)
T TIGR03269 1 IEVKNLTKKFDG------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 (520)
T ss_pred CEEEEEEEEECC------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccc
Confidence 468999999963 46999999999999999999999999999999999997 7999999997
Q ss_pred -----------CeecC-------c-c---HHHhhcceEEecCC-CCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 003716 693 -----------GLDIR-------T-D---MDRIYTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 749 (800)
Q Consensus 693 -----------G~~i~-------~-~---~~~~r~~IGycpQ~-~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~ 749 (800)
|.++. . . ....++.+||+||+ +.+++.+|++||+.+.....+.+.++.+++++++++
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE 154 (520)
T ss_pred ccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33321 0 0 12346779999997 688899999999987555556555566778999999
Q ss_pred HcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 750 ~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.++|. +..++++++|||||||||+||+||+.+|+++|||
T Consensus 155 ~~gl~--~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLD 193 (520)
T TIGR03269 155 MVQLS--HRITHIARDLSGGEKQRVVLARQLAKEPFLFLAD 193 (520)
T ss_pred HcCCh--hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEee
Confidence 99996 4789999999999999999999999999999999
No 222
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=2e-28 Score=240.96 Aligned_cols=153 Identities=26% Similarity=0.417 Sum_probs=133.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
++.+++++..|+. .==..+++|+.||+++|+||+|||||||+|+|+|++.|.+|+|.|+|+|.... ....|
T Consensus 1 ~l~L~~V~~~y~~--------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~-~P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGH--------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS-PPAER 71 (231)
T ss_pred CccccceEEeeCc--------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcC-CcccC
Confidence 3567899999964 23468899999999999999999999999999999999999999999998643 23456
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
-+++++|++.||.+|||.+|+.+... -|++ ..+.+++++.++.++||. ++.++.+.+||||||||+++||+|+.+-
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~-P~LkL~a~~r~~v~~aa~~vGl~--~~~~RLP~~LSGGqRQRvALARclvR~~ 148 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLS-PGLKLNAEQREKVEAAAAQVGLA--GFLKRLPGELSGGQRQRVALARCLVREQ 148 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCC-cccccCHHHHHHHHHHHHHhChh--hHhhhCccccCchHHHHHHHHHHHhccC
Confidence 79999999999999999999987422 2222 355678899999999997 5999999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+|+|||
T Consensus 149 PilLLD 154 (231)
T COG3840 149 PILLLD 154 (231)
T ss_pred CeEEec
Confidence 999999
No 223
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=5.1e-28 Score=249.99 Aligned_cols=153 Identities=22% Similarity=0.384 Sum_probs=125.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.++++|+++.|++. .+.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.. ...+.+
T Consensus 2 ~l~~~~l~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 2 DIEFKNVSLRYRPN----LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred cEEEEEEEEecCCC----CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHh
Confidence 37899999999742 2469999999999999999999999999999999999999999999999998854 344567
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRLs 775 (800)
+.+||+||++.+++ .|++||+.++.. .. .+++.+.++.+++.+ +...++.+.+||||||||++
T Consensus 78 ~~i~~~~q~~~l~~-~tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~ 149 (221)
T cd03244 78 SRISIIPQDPVLFS-GTIRSNLDPFGE---YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLC 149 (221)
T ss_pred hhEEEECCCCcccc-chHHHHhCcCCC---CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHH
Confidence 88999999998876 599999975432 11 234555566665542 01235689999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
+||||+.+|++++||
T Consensus 150 laral~~~p~llllD 164 (221)
T cd03244 150 LARALLRKSKILVLD 164 (221)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
No 224
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.95 E-value=1.4e-27 Score=251.65 Aligned_cols=159 Identities=19% Similarity=0.266 Sum_probs=131.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCcceEEECCeecCcc-HH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTD-MD 701 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl--~~ptsG~I~i~G~~i~~~-~~ 701 (800)
.+++++||++.|++ +.+++++||++++||++||+|+||||||||+++|+|+ ++|++|+|+++|.++... ..
T Consensus 6 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 79 (252)
T CHL00131 6 PILEIKNLHASVNE------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE 79 (252)
T ss_pred ceEEEEeEEEEeCC------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChh
Confidence 46999999999963 4699999999999999999999999999999999998 589999999999998642 22
Q ss_pred Hhhc-ceEEecCCCCCCCCCCHHHHHHHHhhhc----CC---CchhHHHHHHHHHHHcCCCCCccccccCC-CCChhHHH
Q 003716 702 RIYT-SMGVCPQEDLLWETLTGREHLLFYGRLK----NL---KGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKR 772 (800)
Q Consensus 702 ~~r~-~IGycpQ~~~L~~~LTv~E~L~~~~~lk----g~---~~~~~~~~v~~~L~~l~L~~~~~~d~~~~-~LSGG~Kr 772 (800)
..++ .++|+||++.+++.+|++|++.+....+ +. ...+..+.++++++.+++.+ ...++.+. +|||||||
T Consensus 80 ~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgG~~q 158 (252)
T CHL00131 80 ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP-SFLSRNVNEGFSGGEKK 158 (252)
T ss_pred hhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch-hhhccccccCCCHHHHH
Confidence 2222 5899999999999999999998643321 11 11233466788999999962 35788887 59999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++||+||+.+|+|++||
T Consensus 159 rv~la~al~~~p~llllD 176 (252)
T CHL00131 159 RNEILQMALLDSELAILD 176 (252)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 999999999999999999
No 225
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.4e-29 Score=248.22 Aligned_cols=156 Identities=28% Similarity=0.452 Sum_probs=143.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
+++++|++|.|++ +.+++++|++|++|.+++++||||||||||+.|++.++++++|+|+++|+++.. ..++..
T Consensus 1 MI~i~nv~K~y~~------~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LA 74 (252)
T COG4604 1 MITIENVSKSYGT------KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74 (252)
T ss_pred CeeehhhhHhhCC------EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHH
Confidence 5789999999974 789999999999999999999999999999999999999999999999999964 566778
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhh---hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGR---LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~---lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
+.+++.-|.+.+-..+||+|-+.| +| -+|-..++.+..++++++.++|+ +..|+...+||||||||.-||+.++
T Consensus 75 k~lSILkQ~N~i~~rlTV~dLv~F-GRfPYSqGRlt~eD~~~I~~aieyl~L~--~l~dryLd~LSGGQrQRAfIAMVla 151 (252)
T COG4604 75 KKLSILKQENHINSRLTVRDLVGF-GRFPYSQGRLTKEDRRIINEAIEYLHLE--DLSDRYLDELSGGQRQRAFIAMVLA 151 (252)
T ss_pred HHHHHHHhhchhhheeEHHHHhhc-CCCcccCCCCchHHHHHHHHHHHHhccc--chHHHhHHhcccchhhhhhhheeee
Confidence 889999999999999999998876 33 35667788889999999999997 5999999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
++.+.+|||
T Consensus 152 QdTdyvlLD 160 (252)
T COG4604 152 QDTDYVLLD 160 (252)
T ss_pred ccCcEEEec
Confidence 999999999
No 226
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.95 E-value=7.4e-28 Score=250.88 Aligned_cols=143 Identities=23% Similarity=0.267 Sum_probs=122.0
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CcceEEECCeecCccHHHhhcceEEecCCCC--CCCCC
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT----TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL--LWETL 720 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p----tsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~--L~~~L 720 (800)
+++|+||++++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++... +..++.+||+||++. +.+.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL-SIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-hhhhheeEEEecCchhhcCccc
Confidence 57899999999999999999999999999999999999 899999999998542 223367999999984 56778
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-ccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 721 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 721 Tv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~-~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
|++|++.+.....+....+.+++++++++.+++.+. +..++++.+|||||||||+||+||+.+|+|++||
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999876544443334456678999999999621 2678999999999999999999999999999999
No 227
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.95 E-value=7.3e-28 Score=277.53 Aligned_cols=154 Identities=18% Similarity=0.266 Sum_probs=132.8
Q ss_pred EEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHHhhcc
Q 003716 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRIYTS 706 (800)
Q Consensus 629 i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~~r~~ 706 (800)
++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ....++.
T Consensus 1 ~~nl~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 74 (491)
T PRK10982 1 MSNISKSFPG------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENG 74 (491)
T ss_pred CCceEEEeCC------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 3689999963 5699999999999999999999999999999999999999999999999998532 2345678
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhh-hcCC--CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGR-LKNL--KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~-lkg~--~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
+||+||++.+++.+|++||+.+... .++. ...+..++++++++.+++. ...++++++|||||||||+||+||+.+
T Consensus 75 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lA~al~~~ 152 (491)
T PRK10982 75 ISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID--IDPRAKVATLSVSQMQMIEIAKAFSYN 152 (491)
T ss_pred EEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC--CCccCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999986421 2222 2334456789999999997 378999999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|+++|||
T Consensus 153 p~lllLD 159 (491)
T PRK10982 153 AKIVIMD 159 (491)
T ss_pred CCEEEEe
Confidence 9999999
No 228
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2e-27 Score=252.83 Aligned_cols=159 Identities=20% Similarity=0.311 Sum_probs=133.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecC--
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIR-- 697 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~-- 697 (800)
..|+++|++|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 15 ~~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 15 QKSEVNKLNFYYGG------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred ceEEEEEEEEEECC------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 46899999999963 4699999999999999999999999999999999999875 7999999998763
Q ss_pred -c--cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCch-hHHHHHHHHHHHcCCCC--CccccccCCCCChhHH
Q 003716 698 -T--DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMK 771 (800)
Q Consensus 698 -~--~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~-~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~K 771 (800)
. .....++.+||+||++.+++. |++||+.+.....+.... ..++.++++++.+++.+ .+..++.+.+||||||
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 167 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQ 167 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHH
Confidence 1 233557789999999999986 999999875444444332 33567888888888741 1356889999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
||++|||||+.+|+++|||
T Consensus 168 qrv~laral~~~p~llllD 186 (265)
T PRK14252 168 QRLCIARALATDPEILLFD 186 (265)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 9999999999999999999
No 229
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.6e-27 Score=259.80 Aligned_cols=162 Identities=25% Similarity=0.397 Sum_probs=135.2
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-----ptsG~I~i~G~~i~~ 698 (800)
...|+++|+++.|.+. .+.+|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.++|+++..
T Consensus 78 ~~~i~~~nls~~y~~~----~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR----TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CceEEEEeeEEEecCC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 3579999999999631 3569999999999999999999999999999999999986 579999999999963
Q ss_pred ---cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchh-HHHHHHHHHHHcCCCC--CccccccCCCCChhHHH
Q 003716 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 ---~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~-~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~Kr 772 (800)
....+++.+||+||++.+++ .|++||+.+.....+...++ .++.++++++.++|.+ ....++++.+|||||||
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkq 232 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQ 232 (329)
T ss_pred cccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHH
Confidence 22456788999999999886 79999999754444443332 3445788899988742 12468899999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++|||||+.+|+|+|||
T Consensus 233 Rl~LARAl~~~p~IlLLD 250 (329)
T PRK14257 233 RLCIARAIALEPEVLLMD 250 (329)
T ss_pred HHHHHHHHHhCCCEEEEe
Confidence 999999999999999999
No 230
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.95 E-value=1.4e-27 Score=248.12 Aligned_cols=145 Identities=30% Similarity=0.401 Sum_probs=124.3
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
+.+++++++|++ +++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.. .
T Consensus 23 l~~~~~~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~----~--- 89 (224)
T cd03220 23 LGILGRKGEVGE------FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL----L--- 89 (224)
T ss_pred hhhhhhhhhcCC------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh----h---
Confidence 678888888864 579999999999999999999999999999999999999999999999987631 1
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
.+...+++.+|++||+.+....++....+.+++++++++.+++. +..++++++||||||||+++|+||+.+|++
T Consensus 90 ----~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~laral~~~p~l 163 (224)
T cd03220 90 ----GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELG--DFIDLPVKTYSSGMKARLAFAIATALEPDI 163 (224)
T ss_pred ----cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 11233456789999998876555555555566788999999996 478999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
+|||
T Consensus 164 lllD 167 (224)
T cd03220 164 LLID 167 (224)
T ss_pred EEEe
Confidence 9999
No 231
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.95 E-value=1.5e-27 Score=276.87 Aligned_cols=164 Identities=29% Similarity=0.354 Sum_probs=134.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEEC-Cee---cCc--
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ-GLD---IRT-- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~-G~~---i~~-- 698 (800)
.+++++||+|.|++.+ .+.+.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++ |.+ +..
T Consensus 278 ~~l~~~~l~~~~~~~~-~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 278 PIIKVRNVSKRYISVD-RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred ceEEEeccEEEeccCC-CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 4799999999996311 013569999999999999999999999999999999999999999999996 643 221
Q ss_pred --cHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC---ccccccCCCCChhHHHH
Q 003716 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG---GVADKQAGKYSGGMKRR 773 (800)
Q Consensus 699 --~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~---~~~d~~~~~LSGG~KrR 773 (800)
.....++.+||+||++.+++.+|++||+.+...+ +.+.++.+++++++++.++|.+. +..++++.+||||||||
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 1123456799999999999999999999875333 23333345678899999999631 25789999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|+||+||+.+|+|+|||
T Consensus 436 v~laral~~~p~lLllD 452 (520)
T TIGR03269 436 VALAQVLIKEPRIVILD 452 (520)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 99999999999999999
No 232
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.95 E-value=1e-27 Score=250.02 Aligned_cols=137 Identities=33% Similarity=0.465 Sum_probs=119.9
Q ss_pred eeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHH
Q 003716 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 727 (800)
Q Consensus 648 l~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~ 727 (800)
++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.... ...+|+||++.+++.+|++||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC----hhheEEecCcccCCCCCHHHHHH
Confidence 57999999999999999999999999999999999999999999999985421 12489999999999999999998
Q ss_pred HHhh--hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 728 FYGR--LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 728 ~~~~--lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+... ..+....+..+.++++++.++|. +..++++++||||||||++||+||+.+|+++|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 139 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLT--EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLD 139 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCH--HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 7532 22344445566789999999996 4789999999999999999999999999999999
No 233
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.95 E-value=1.1e-27 Score=271.78 Aligned_cols=167 Identities=26% Similarity=0.371 Sum_probs=143.0
Q ss_pred CCCcEEEEeEEEEcCCCC-----CCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecC
Q 003716 623 TSHAIISDNLRKIYPGRD-----GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 697 (800)
Q Consensus 623 ~~~~i~i~nL~k~Y~~~~-----~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~ 697 (800)
..+.++++||+|.|..++ ..+...||+||||+|++||++||+|++|||||||.|+|+|+++|++|+|.++|.+..
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 346789999999998532 123568999999999999999999999999999999999999999999999998832
Q ss_pred ---ccHHHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHH
Q 003716 698 ---TDMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771 (800)
Q Consensus 698 ---~~~~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~K 771 (800)
.+..+.|+++-+++|++ .|.|.+||++.+.--..+++. ...+.++++.++++.++|.+ +++++++++||||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~-~~l~ryP~elSGGQr 435 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPP-EFLDRYPHELSGGQR 435 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCH-HHHhcCchhcCcchh
Confidence 12345667788888875 699999999999876665543 34566678999999999985 689999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
||++|||||+.+|++|++|
T Consensus 436 QRvaIARALa~~P~lli~D 454 (539)
T COG1123 436 QRVAIARALALEPKLLILD 454 (539)
T ss_pred HHHHHHHHHhcCCCEEEec
Confidence 9999999999999999999
No 234
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.7e-27 Score=248.49 Aligned_cols=154 Identities=23% Similarity=0.438 Sum_probs=123.1
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
++++|+++.|++ .+.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ 75 (236)
T cd03253 1 IEFENVTFAYDP-----GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75 (236)
T ss_pred CEEEEEEEEeCC-----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHh
Confidence 468999999963 2459999999999999999999999999999999999999999999999998864 3445677
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCccccccCCCCChhHHHHHHHHH
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~-----~v~~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
.+||+||++.+++ .|++||+.+.... ....+..+ .+.+.++.+ ++. ...++++.+||||||||++||+
T Consensus 76 ~i~~~~q~~~~~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~LS~G~~~rl~la~ 150 (236)
T cd03253 76 AIGVVPQDTVLFN-DTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYD--TIVGERGLKLSGGEKQRVAIAR 150 (236)
T ss_pred hEEEECCCChhhc-chHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhcccccc--chhhcCCCcCCHHHHHHHHHHH
Confidence 8999999999886 6999999874321 11111111 122333333 333 2456778999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+++|||
T Consensus 151 aL~~~p~llllD 162 (236)
T cd03253 151 AILKNPPILLLD 162 (236)
T ss_pred HHhcCCCEEEEe
Confidence 999999999999
No 235
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.95 E-value=1.3e-27 Score=249.78 Aligned_cols=156 Identities=27% Similarity=0.477 Sum_probs=123.7
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
++++|+++.|++.+ ++.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++.. .....++
T Consensus 1 l~i~~l~~~~~~~~---~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (238)
T cd03249 1 IEFKNVSFRYPSRP---DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77 (238)
T ss_pred CeEEEEEEecCCCC---CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHh
Confidence 46899999996421 2469999999999999999999999999999999999999999999999998753 3344567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCccccccCCCCChhHHHHHHHHH
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~-----~v~~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
.+||+||++.+++ .|++||+.+....+ ..++..+ .+.+.++.+ ++. ...++++.+||||||||+++|+
T Consensus 78 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~LS~G~~qrv~la~ 152 (238)
T cd03249 78 QIGLVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYD--TLVGERGSQLSGGQKQRIAIAR 152 (238)
T ss_pred hEEEECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccc--eeeccCCccCCHHHHHHHHHHH
Confidence 7999999998886 69999998743221 1111111 122333333 443 3567889999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|++++||
T Consensus 153 al~~~p~llllD 164 (238)
T cd03249 153 ALLRNPKILLLD 164 (238)
T ss_pred HHhcCCCEEEEe
Confidence 999999999999
No 236
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.3e-27 Score=276.71 Aligned_cols=157 Identities=18% Similarity=0.292 Sum_probs=132.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~ 702 (800)
.+++++|++|.|+ .+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... ...
T Consensus 264 ~~l~~~~l~~~~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~ 335 (510)
T PRK09700 264 TVFEVRNVTSRDR--------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDA 335 (510)
T ss_pred cEEEEeCccccCC--------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHH
Confidence 4799999998762 289999999999999999999999999999999999999999999999988542 234
Q ss_pred hhcceEEecCC---CCCCCCCCHHHHHHHHhhh-----c---CC-CchhHHHHHHHHHHHcCCCCCccccccCCCCChhH
Q 003716 703 IYTSMGVCPQE---DLLWETLTGREHLLFYGRL-----K---NL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (800)
Q Consensus 703 ~r~~IGycpQ~---~~L~~~LTv~E~L~~~~~l-----k---g~-~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~ 770 (800)
.++.+||+||+ ..+++.+|++||+.+.... + +. ...+.++.++++++.+++.. +..++++++|||||
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq 414 (510)
T PRK09700 336 VKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC-HSVNQNITELSGGN 414 (510)
T ss_pred HHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC-CCccCccccCChHH
Confidence 56789999998 4688999999999864221 1 11 12233456889999999952 36899999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEc
Q 003716 771 KRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 771 KrRLsiA~ALig~P~vlLLD 790 (800)
||||+||+||+.+|+|+|||
T Consensus 415 ~qrv~lAral~~~p~lLlLD 434 (510)
T PRK09700 415 QQKVLISKWLCCCPEVIIFD 434 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEC
Confidence 99999999999999999999
No 237
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=8.3e-28 Score=229.42 Aligned_cols=130 Identities=34% Similarity=0.577 Sum_probs=115.6
Q ss_pred eeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhcceEEecCCCCCCCCCCHHHHH
Q 003716 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHL 726 (800)
Q Consensus 648 l~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~~IGycpQ~~~L~~~LTv~E~L 726 (800)
|+|+||+|++||+++|+|+||||||||+++|+|..+|++|+|.++|.++.. .....++.++|++|++.+++.+|++|+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 689999999999999999999999999999999999999999999999987 455678899999999999999999999
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCC--CccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 727 LFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 727 ~~~~~lkg~~~~~~~~~v~~~L~~l~L~~--~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
..++.++++++.+++.+ ....++++.+|||||||||+||+||+.+|++++||
T Consensus 80 ------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllD 133 (137)
T PF00005_consen 80 ------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLD 133 (137)
T ss_dssp ------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred ------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEe
Confidence 34556888889888763 12334444999999999999999999999999999
No 238
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.95 E-value=2.9e-27 Score=274.99 Aligned_cols=164 Identities=19% Similarity=0.300 Sum_probs=136.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCcc
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRTD 699 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~~ 699 (800)
++++++|+++.|++.+ ..+.+++++||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++...
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 81 (529)
T PRK15134 4 PLLAIENLSVAFRQQQ--TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA 81 (529)
T ss_pred ceEEEeceEEEecCCC--CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccC
Confidence 4699999999996311 125799999999999999999999999999999999999986 799999999998542
Q ss_pred -H---HHhh-cceEEecCCCC--CCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCC-ccccccCCCCChhH
Q 003716 700 -M---DRIY-TSMGVCPQEDL--LWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGM 770 (800)
Q Consensus 700 -~---~~~r-~~IGycpQ~~~--L~~~LTv~E~L~~~~~l-kg~~~~~~~~~v~~~L~~l~L~~~-~~~d~~~~~LSGG~ 770 (800)
. ...+ +.+||+||++. +++.+|++|++.+.... .+.+..+..++++++++.++|.+. +..++++++|||||
T Consensus 82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe 161 (529)
T PRK15134 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGE 161 (529)
T ss_pred CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHH
Confidence 1 1233 57999999974 67788999998765433 245555667889999999999631 14689999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEc
Q 003716 771 KRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 771 KrRLsiA~ALig~P~vlLLD 790 (800)
||||+||+||+.+|+++|||
T Consensus 162 ~qrv~iAraL~~~p~llllD 181 (529)
T PRK15134 162 RQRVMIAMALLTRPELLIAD 181 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999999
No 239
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=7.3e-28 Score=232.56 Aligned_cols=157 Identities=27% Similarity=0.402 Sum_probs=143.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeec--Cc-----
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI--RT----- 698 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i--~~----- 698 (800)
.|+++++++.||. ..+|.||+|+.++||.+.|+||+|||||||+|.|.-++.|.+|+..|.|... .+
T Consensus 2 sirv~~in~~yg~------~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k 75 (242)
T COG4161 2 SIQLNGINCFYGA------HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred ceEEccccccccc------chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHH
Confidence 5889999999974 5799999999999999999999999999999999999999999999988654 22
Q ss_pred cHHHhhcceEEecCCCCCCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHH
Q 003716 699 DMDRIYTSMGVCPQEDLLWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 699 ~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~-~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA 777 (800)
...+.|+.+|+++|.-.|||+|||.|||.- -.+..|+++++...++.++|+++.|. +++|+.+-+|||||+||++||
T Consensus 76 ~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~--~~adr~plhlsggqqqrvaia 153 (242)
T COG4161 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK--PYADRYPLHLSGGQQQRVAIA 153 (242)
T ss_pred HHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccc--cccccCceecccchhhhHHHH
Confidence 235678999999999999999999999865 45778999999999999999999997 599999999999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
|||+.+|+|++.|
T Consensus 154 ralmmkpqvllfd 166 (242)
T COG4161 154 RALMMEPQVLLFD 166 (242)
T ss_pred HHHhcCCcEEeec
Confidence 9999999999999
No 240
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.95 E-value=3.3e-27 Score=248.06 Aligned_cols=158 Identities=20% Similarity=0.287 Sum_probs=128.5
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCcceEEECCeecCc-cHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~--~ptsG~I~i~G~~i~~-~~~~ 702 (800)
+++++||+|.|++ +.+++++||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|+++.. ....
T Consensus 1 ~i~~~nl~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 74 (248)
T PRK09580 1 MLSIKDLHVSVED------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74 (248)
T ss_pred CeEEEEEEEEeCC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHH
Confidence 4789999999963 46999999999999999999999999999999999995 6999999999998854 2222
Q ss_pred -hhcceEEecCCCCCCCCCCHHHHHHHHh-hhc---C---CCchhHHHHHHHHHHHcCCCCCccccccCC-CCChhHHHH
Q 003716 703 -IYTSMGVCPQEDLLWETLTGREHLLFYG-RLK---N---LKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRR 773 (800)
Q Consensus 703 -~r~~IGycpQ~~~L~~~LTv~E~L~~~~-~lk---g---~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~-~LSGG~KrR 773 (800)
.++.+||++|++.+++.+|+.+++.+.. .+. . ....+..+.+++.++.+++.+ +..++++. +||||||||
T Consensus 75 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPE-DLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred HhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCCh-hhcccCCCCCCCHHHHHH
Confidence 3457999999999988888777765421 111 1 112234567788999999953 46677775 899999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++||+||+.+|++++||
T Consensus 154 v~laral~~~p~illLD 170 (248)
T PRK09580 154 NDILQMAVLEPELCILD 170 (248)
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 99999999999999999
No 241
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.95 E-value=2e-27 Score=254.70 Aligned_cols=150 Identities=23% Similarity=0.431 Sum_probs=129.4
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.|+++||++.|++. ...+|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|+++|.++.. ....++
T Consensus 2 ~i~~~nls~~~~~~----~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr 76 (275)
T cd03289 2 QMTVKDLTAKYTEG----GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWR 76 (275)
T ss_pred eEEEEEEEEEeCCC----CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHh
Confidence 37899999999631 2469999999999999999999999999999999999998 79999999999864 455678
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCC-----------CChhHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK-----------YSGGMKRR 773 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~-----------LSGG~KrR 773 (800)
+.|+|+||++.+++. |++||+..+.. .. ++++.+.++.++|. ++.++.+.. ||||||||
T Consensus 77 ~~i~~v~q~~~lf~~-tv~~nl~~~~~---~~----~~~~~~~l~~~gL~--~~~~~~p~~l~~~~~~~g~~LS~G~~qr 146 (275)
T cd03289 77 KAFGVIPQKVFIFSG-TFRKNLDPYGK---WS----DEEIWKVAEEVGLK--SVIEQFPGQLDFVLVDGGCVLSHGHKQL 146 (275)
T ss_pred hhEEEECCCcccchh-hHHHHhhhccC---CC----HHHHHHHHHHcCCH--HHHHhCcccccceecCCCCCCCHHHHHH
Confidence 899999999999985 99999975432 11 34677888899996 467777766 99999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
+++||||+.+|+|++||
T Consensus 147 l~LaRall~~p~illlD 163 (275)
T cd03289 147 MCLARSVLSKAKILLLD 163 (275)
T ss_pred HHHHHHHhcCCCEEEEE
Confidence 99999999999999999
No 242
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2e-27 Score=238.34 Aligned_cols=122 Identities=30% Similarity=0.483 Sum_probs=111.3
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc---HHHh
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---MDRI 703 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~---~~~~ 703 (800)
++++|+++.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ....
T Consensus 1 i~~~~l~~~~~~------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (178)
T cd03229 1 LELKNVSKRYGQ------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPL 74 (178)
T ss_pred CEEEEEEEEECC------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHH
Confidence 468999999963 4699999999999999999999999999999999999999999999999988642 3456
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
++.++|+||++.+++.+|++|++.+. ||||||||+++|+||+.+
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 75 RRRIGMVFQDFALFPHLTVLENIALG------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred hhcEEEEecCCccCCCCCHHHheeec------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 78899999999999999999988642 999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|++++||
T Consensus 119 p~llilD 125 (178)
T cd03229 119 PDVLLLD 125 (178)
T ss_pred CCEEEEe
Confidence 9999999
No 243
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.95 E-value=1.7e-27 Score=274.92 Aligned_cols=162 Identities=19% Similarity=0.308 Sum_probs=135.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CcceEEECCeecCc--cHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDIRT--DMD 701 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-tsG~I~i~G~~i~~--~~~ 701 (800)
.+|+++|+++.|++. +++.+++++||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++.. ...
T Consensus 256 ~~l~~~~l~~~~~~~---~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~ 332 (500)
T TIGR02633 256 VILEARNLTCWDVIN---PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQ 332 (500)
T ss_pred ceEEEeCCccccccc---ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHH
Confidence 469999999999421 124599999999999999999999999999999999999995 89999999999853 224
Q ss_pred HhhcceEEecCCC---CCCCCCCHHHHHHHHh--hhc---CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHH
Q 003716 702 RIYTSMGVCPQED---LLWETLTGREHLLFYG--RLK---NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 702 ~~r~~IGycpQ~~---~L~~~LTv~E~L~~~~--~lk---g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR 773 (800)
..++++||+||+. .+++.+|++|++.+.. ... +....+.+++++++++.+++.+ ...++++++||||||||
T Consensus 333 ~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqr 411 (500)
T TIGR02633 333 AIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT-ASPFLPIGRLSGGNQQK 411 (500)
T ss_pred HHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC-CCccCccccCCHHHHHH
Confidence 4577899999995 5899999999998632 121 1222334567899999999963 35799999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|+||+||+.+|+++|||
T Consensus 412 v~la~al~~~p~lllLD 428 (500)
T TIGR02633 412 AVLAKMLLTNPRVLILD 428 (500)
T ss_pred HHHHHHHhhCCCEEEEc
Confidence 99999999999999999
No 244
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=3.1e-28 Score=238.76 Aligned_cols=158 Identities=26% Similarity=0.423 Sum_probs=143.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc------
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~------ 698 (800)
+.++++||.|+|+. ..+|++||++..+|+++.|+|.+|+||||+++||.=++.|+.|.|.++|++|+.
T Consensus 5 ~~l~v~dlHK~~G~------~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G 78 (256)
T COG4598 5 NALEVEDLHKRYGE------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDG 78 (256)
T ss_pred cceehhHHHhhccc------chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCC
Confidence 57899999999974 679999999999999999999999999999999999999999999999998841
Q ss_pred --------cHHHhhcceEEecCCCCCCCCCCHHHHHHHH-hhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChh
Q 003716 699 --------DMDRIYTSMGVCPQEDLLWETLTGREHLLFY-GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 769 (800)
Q Consensus 699 --------~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~-~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG 769 (800)
+..++|.++|+++|+..||.+||+.||+.-. -..-|.++.+..++++.+|.++|+. +..|.++..||||
T Consensus 79 ~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~--ek~~~YP~~LSGG 156 (256)
T COG4598 79 QLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA--EKADAYPAHLSGG 156 (256)
T ss_pred CeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch--hhhhcCccccCch
Confidence 2345678899999999999999999998753 2344788889999999999999998 4789999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEc
Q 003716 770 MKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 770 ~KrRLsiA~ALig~P~vlLLD 790 (800)
|+||++|||||+.+|+++|.|
T Consensus 157 QQQR~aIARaLameP~vmLFD 177 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFD 177 (256)
T ss_pred HHHHHHHHHHHhcCCceEeec
Confidence 999999999999999999999
No 245
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=3.4e-27 Score=241.75 Aligned_cols=145 Identities=24% Similarity=0.389 Sum_probs=121.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..++++|+++.|++. .+.+++++||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.. ...+.
T Consensus 5 ~~l~~~~l~~~~~~~----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 5 GEIEVENLSVRYAPD----LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CeEEEEEEEEEeCCC----CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 358999999999742 2469999999999999999999999999999999999999999999999998853 33456
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
++.|||+||++.+++ .|++||+.++.. .. .+.+.+.++ .++++.+||||||||+++||||+.+
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~~~l~~~~~---~~----~~~~~~~l~---------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 81 RSSLTIIPQDPTLFS-GTIRSNLDPFDE---YS----DEEIYGALR---------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred HhhEEEEecCCcccC-ccHHHHhcccCC---CC----HHHHHHHhh---------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 778999999998887 499999975421 11 122334433 2567899999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|+++|||
T Consensus 144 p~llllD 150 (207)
T cd03369 144 PRVLVLD 150 (207)
T ss_pred CCEEEEe
Confidence 9999999
No 246
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.95 E-value=2.3e-27 Score=275.81 Aligned_cols=164 Identities=22% Similarity=0.316 Sum_probs=136.0
Q ss_pred CcEEEEeEEEEcCCCCC-----CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc
Q 003716 625 HAIISDNLRKIYPGRDG-----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD 699 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~-----~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~ 699 (800)
.+++++||++.|+...+ ...+.+++++||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++...
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence 46999999999963110 012569999999999999999999999999999999999995 899999999988531
Q ss_pred -H---HHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcC--CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHH
Q 003716 700 -M---DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771 (800)
Q Consensus 700 -~---~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg--~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~K 771 (800)
. ...++.+||+||++ .+++.+|++||+.+....++ .+..+.+++++++++.++|.+ +..++++++||||||
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP-ETRHRYPAEFSGGQR 431 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH-HHHhcCCccCCHHHH
Confidence 1 22356799999996 58889999999987543332 344455677899999999962 367999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
|||+||+||+.+|+++|||
T Consensus 432 qrv~la~al~~~p~llllD 450 (529)
T PRK15134 432 QRIAIARALILKPSLIILD 450 (529)
T ss_pred HHHHHHHHHhCCCCEEEee
Confidence 9999999999999999999
No 247
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.95 E-value=3.6e-27 Score=239.93 Aligned_cols=132 Identities=30% Similarity=0.489 Sum_probs=115.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCcceEEECCeecCccHHHh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~--~ptsG~I~i~G~~i~~~~~~~ 703 (800)
.++++||+|.|++..+...+.+++++||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. ...
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~--~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK--RSF 80 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch--Hhh
Confidence 478999999997421111256999999999999999999999999999999999999 9999999999999864 256
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
++.++|+||++.+++.+|++||+.+..+++ +||||||||+++||||+.+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------GLSGGERKRVSIALELVSN 129 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------cCCHHHHHHHHHHHHHHcC
Confidence 778999999999999999999997642210 7999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|++++||
T Consensus 130 p~illlD 136 (194)
T cd03213 130 PSLLFLD 136 (194)
T ss_pred CCEEEEe
Confidence 9999999
No 248
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.95 E-value=3.4e-27 Score=249.68 Aligned_cols=141 Identities=26% Similarity=0.392 Sum_probs=122.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+++++||+|.|++ +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 3 ~~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~----------~ 66 (251)
T PRK09544 3 SLVSLENVSVSFGQ------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG----------K 66 (251)
T ss_pred cEEEEeceEEEECC------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC----------c
Confidence 36899999999963 4699999999999999999999999999999999999999999999986 2
Q ss_pred cceEEecCCCCCCCCC--CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 705 TSMGVCPQEDLLWETL--TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~L--Tv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
..+||+||++.+++.+ |++|++.+.. +. .++++.++++.+++. +..++++.+||||||||+++|+||+.
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~~---~~----~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLRP---GT----KKEDILPALKRVQAG--HLIDAPMQKLSGGETQRVLLARALLN 137 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhccc---cc----cHHHHHHHHHHcCCh--HHHhCChhhCCHHHHHHHHHHHHHhc
Confidence 4699999998887764 7777765421 11 134678899999997 47899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 138 ~p~lllLD 145 (251)
T PRK09544 138 RPQLLVLD 145 (251)
T ss_pred CCCEEEEe
Confidence 99999999
No 249
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.9e-27 Score=235.21 Aligned_cols=120 Identities=42% Similarity=0.694 Sum_probs=110.2
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++|+++.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.....+.++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (173)
T cd03230 1 IEVRNLSKRYGK------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRR 74 (173)
T ss_pred CEEEEEEEEECC------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhcc
Confidence 468999999963 36999999999999999999999999999999999999999999999999886433456778
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++.+|++||+. ||||||||++||+||+.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~~~--------------------------------------LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 75 IGYLPEEPSLYENLTVRENLK--------------------------------------LSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred EEEEecCCccccCCcHHHHhh--------------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999974 999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 117 lllD 120 (173)
T cd03230 117 LILD 120 (173)
T ss_pred EEEe
Confidence 9999
No 250
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.95 E-value=2.3e-27 Score=278.84 Aligned_cols=152 Identities=23% Similarity=0.383 Sum_probs=125.5
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.|+++|+++.|.+ ++.+++|+||++++||.++|+|+||||||||+++|+|++ |++|+|.++|+++.+ +.+.+|
T Consensus 349 ~i~~~~vsf~~~~-----~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr 422 (588)
T PRK11174 349 TIEAEDLEILSPD-----GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWR 422 (588)
T ss_pred eEEEEeeEEeccC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHH
Confidence 5999999976643 256999999999999999999999999999999999999 999999999999975 567789
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRLs 775 (800)
++||||||++.+|+. |++||+.+.. ...+ +++++++++..++.+ +....+...+||||||||++
T Consensus 423 ~~i~~v~Q~~~LF~~-TI~eNI~~g~--~~~~----~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRia 495 (588)
T PRK11174 423 KHLSWVGQNPQLPHG-TLRDNVLLGN--PDAS----DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLA 495 (588)
T ss_pred hheEEecCCCcCCCc-CHHHHhhcCC--CCCC----HHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHH
Confidence 999999999999987 9999999742 1223 334445555444421 01234456679999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
|||||+.+|+|++||
T Consensus 496 lARAll~~~~IliLD 510 (588)
T PRK11174 496 LARALLQPCQLLLLD 510 (588)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
No 251
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=3.3e-27 Score=266.42 Aligned_cols=158 Identities=23% Similarity=0.319 Sum_probs=141.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cH-HH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM-DR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~-~~ 702 (800)
+.++++|++|.|++ .+||+++||++++||++||+|.||||||||+|+|+|.++|++|+|+++|+.+.. .. +.
T Consensus 7 ~ll~~~~i~K~Fgg------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A 80 (500)
T COG1129 7 PLLELRGISKSFGG------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDA 80 (500)
T ss_pred ceeeeecceEEcCC------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHH
Confidence 46889999999985 689999999999999999999999999999999999999999999999999863 33 44
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk----g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
....|+.++|+..|.|+|||.||+.+....+ -+.++...++++++|+.+++.. + .+.++++||+||||.|.|||
T Consensus 81 ~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~-~-~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 81 LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDI-D-PDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred HhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCC-C-hhhhhhhCCHHHHHHHHHHH
Confidence 4567999999999999999999998654332 2566788899999999999963 3 89999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||..+++||+||
T Consensus 159 Al~~~arllIlD 170 (500)
T COG1129 159 ALSFDARVLILD 170 (500)
T ss_pred HHhcCCCEEEEc
Confidence 999999999999
No 252
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=4.3e-28 Score=235.73 Aligned_cols=143 Identities=27% Similarity=0.418 Sum_probs=132.0
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhcceEEecCCCCCCCCCCH
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTG 722 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~~IGycpQ~~~L~~~LTv 722 (800)
+..+|+++||++.+||..+|.||+|||||||+|+++-+++||+|++++.|+++.+ ..+..|++|+||-|.+.||++ ||
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tV 93 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TV 93 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-ch
Confidence 3579999999999999999999999999999999999999999999999999976 667889999999999999998 99
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 723 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 723 ~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
++||.|--++++-.. .+.+..++|+++++.+ ..+++++.+||||||||++++|-|.-.|+|+|||
T Consensus 94 eDNlifP~~~r~rr~--dr~aa~~llar~~l~~-~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 94 EDNLIFPWQIRNRRP--DRAAALDLLARFALPD-SILTKNITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred hhccccchHHhccCC--ChHHHHHHHHHcCCch-hhhcchhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 999999877775332 4567888999999986 6899999999999999999999999999999999
No 253
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.95 E-value=1.4e-27 Score=282.86 Aligned_cols=156 Identities=22% Similarity=0.424 Sum_probs=129.3
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~ 702 (800)
...++++|++++|+.. +..+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||+|+.. +...
T Consensus 469 ~g~I~~~nvsf~y~~~----~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~ 544 (709)
T COG2274 469 QGEIEFENVSFRYGPD----DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLAS 544 (709)
T ss_pred CceEEEEEEEEEeCCC----CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHH
Confidence 3469999999999853 2369999999999999999999999999999999999999999999999999975 7788
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrR 773 (800)
+|++|||++|++.||.. |++||+.+.... .+ .+++.++++..|..+ +....+....||||||||
T Consensus 545 lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~--~~----~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQr 617 (709)
T COG2274 545 LRRQVGYVLQDPFLFSG-SIRENIALGNPE--AT----DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR 617 (709)
T ss_pred HHhheeEEcccchhhcC-cHHHHHhcCCCC--CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHH
Confidence 99999999999999987 999999974321 11 233333333333321 123345667899999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++|||||+.+|+|++||
T Consensus 618 lalARaLl~~P~ILlLD 634 (709)
T COG2274 618 LALARALLSKPKILLLD 634 (709)
T ss_pred HHHHHHhccCCCEEEEe
Confidence 99999999999999999
No 254
>PLN03211 ABC transporter G-25; Provisional
Probab=99.95 E-value=2.2e-27 Score=281.59 Aligned_cols=151 Identities=25% Similarity=0.424 Sum_probs=129.6
Q ss_pred EEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--cceEEECCeecCccHHHhhcc
Q 003716 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT--SGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 629 i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt--sG~I~i~G~~i~~~~~~~r~~ 706 (800)
++|++|.|+ ++.+|+|+|+++++||++||+||||||||||+++|+|..+|+ +|+|.++|+++.. +.+++
T Consensus 71 ~~~l~~~~~------~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~---~~~~~ 141 (659)
T PLN03211 71 ISDETRQIQ------ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK---QILKR 141 (659)
T ss_pred cccccccCC------CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch---hhccc
Confidence 456677775 357999999999999999999999999999999999999985 8999999998743 34567
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhc---CCCchhHHHHHHHHHHHcCCCCCccc-----cccCCCCChhHHHHHHHHH
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLK---NLKGPALTQAVEESLKSVNLFHGGVA-----DKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lk---g~~~~~~~~~v~~~L~~l~L~~~~~~-----d~~~~~LSGG~KrRLsiA~ 778 (800)
+||++|++.+++.+||+|++.+.+.++ ....++.+++++++++.+||.+ .+ ++.+++||||||||++||+
T Consensus 142 i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~LSgGerqRv~ia~ 219 (659)
T PLN03211 142 TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK--CENTIIGNSFIRGISGGERKRVSIAH 219 (659)
T ss_pred eEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh--hcCceeCCCCCCCcChhhhhHHHHHH
Confidence 999999999999999999999877654 2233455677899999999963 44 4567889999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+|++||
T Consensus 220 aL~~~P~iLlLD 231 (659)
T PLN03211 220 EMLINPSLLILD 231 (659)
T ss_pred HHHhCCCEEEEe
Confidence 999999999999
No 255
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=7.1e-28 Score=239.27 Aligned_cols=158 Identities=28% Similarity=0.372 Sum_probs=139.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECC-eecCc--cHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG-LDIRT--DMD 701 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G-~~i~~--~~~ 701 (800)
..+.+++|+..|++ ..||+++||+|.+||.-+|+|||||||||++.+|+|..+|+.|+++++| .|+.. +.+
T Consensus 4 ~iL~~~~vsVsF~G------F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~ 77 (249)
T COG4674 4 IILYLDGVSVSFGG------FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR 77 (249)
T ss_pred ceEEEeceEEEEcc------eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHH
Confidence 46899999999985 6799999999999999999999999999999999999999999999999 88865 334
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhh--------hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHH
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGR--------LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~--------lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR 773 (800)
.+|..||--+|.+..|+.+||+|||.+..+ +..-...+.+.+++++|+..+|. +.+|..++.||.||||+
T Consensus 78 IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~--~~~~~~A~~LSHGqKQw 155 (249)
T COG4674 78 IARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG--DERDRLAALLSHGQKQW 155 (249)
T ss_pred HHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccc--hhhhhhhhhhccchhhh
Confidence 456778999999999999999999997432 22222345567899999999998 48999999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|.|++-++++|++++||
T Consensus 156 LEIGMll~Q~P~lLLlD 172 (249)
T COG4674 156 LEIGMLLAQDPKLLLLD 172 (249)
T ss_pred hhhheeeccCCcEEEec
Confidence 99999999999999999
No 256
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.95 E-value=9.8e-27 Score=248.00 Aligned_cols=152 Identities=24% Similarity=0.300 Sum_probs=131.3
Q ss_pred CcEEEEeEEEEcCCCC--------------CCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEE
Q 003716 625 HAIISDNLRKIYPGRD--------------GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~--------------~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~ 690 (800)
..|+++||+|.|.... .+..+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 4688999999997531 12346799999999999999999999999999999999999999999999
Q ss_pred ECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhH
Q 003716 691 VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (800)
Q Consensus 691 i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~ 770 (800)
++|. +++++|...+.+.+|++||+.+.....+...++..+.++++++.+++. +..++++++|||||
T Consensus 83 ~~g~------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq 148 (264)
T PRK13546 83 RNGE------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG--EFIYQPVKKYSSGM 148 (264)
T ss_pred ECCE------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCCcccCCHHH
Confidence 9984 457788877888899999998765555555556666778899999996 47899999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEc
Q 003716 771 KRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 771 KrRLsiA~ALig~P~vlLLD 790 (800)
|||+++|+||+.+|+++|||
T Consensus 149 ~qrv~Laral~~~p~iLlLD 168 (264)
T PRK13546 149 RAKLGFSINITVNPDILVID 168 (264)
T ss_pred HHHHHHHHHHhhCCCEEEEe
Confidence 99999999999999999999
No 257
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.4e-27 Score=272.06 Aligned_cols=162 Identities=20% Similarity=0.348 Sum_probs=134.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCcceEEECCeecCcc--HH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQGLDIRTD--MD 701 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-ptsG~I~i~G~~i~~~--~~ 701 (800)
.+|+++||+|.|+.. +.+.+++|+||+|++||++||+|+||||||||+|+|+|+++ |++|+|+++|+++... .+
T Consensus 258 ~~l~~~~l~~~~~~~---~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~ 334 (506)
T PRK13549 258 VILEVRNLTAWDPVN---PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQ 334 (506)
T ss_pred ceEEEecCccccccc---cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHH
Confidence 469999999999521 12469999999999999999999999999999999999998 5999999999998532 23
Q ss_pred HhhcceEEecCCC---CCCCCCCHHHHHHHHh--hhcC---CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHH
Q 003716 702 RIYTSMGVCPQED---LLWETLTGREHLLFYG--RLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 702 ~~r~~IGycpQ~~---~L~~~LTv~E~L~~~~--~lkg---~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR 773 (800)
..++.+||+||++ .+++.+|+.||+.+.. .+.+ ....+.+++++++++.+++.+ +..++++++||||||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~kqr 413 (506)
T PRK13549 335 AIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT-ASPELAIARLSGGNQQK 413 (506)
T ss_pred HHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC-CCcccccccCCHHHHHH
Confidence 4567799999995 5888999999998642 2221 123344567899999999952 36899999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|+||+||+.+|+++|||
T Consensus 414 v~lA~al~~~p~lllLD 430 (506)
T PRK13549 414 AVLAKCLLLNPKILILD 430 (506)
T ss_pred HHHHHHHhhCCCEEEEc
Confidence 99999999999999999
No 258
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.95 E-value=5.4e-27 Score=280.55 Aligned_cols=154 Identities=25% Similarity=0.411 Sum_probs=130.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++||++.|++. ++.+++|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||++++. +.+.+
T Consensus 450 ~~I~~~nvsf~Y~~~----~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 525 (686)
T TIGR03797 450 GAIEVDRVTFRYRPD----GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAV 525 (686)
T ss_pred ceEEEEEEEEEcCCC----CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHH
Confidence 369999999999642 3569999999999999999999999999999999999999999999999999976 67788
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|++||||||++.+|+. |++||+.+... . .++++.++++..++.+ +....+...+||||||||+
T Consensus 526 r~~i~~v~Q~~~lf~g-TI~eNi~~~~~---~----~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRi 597 (686)
T TIGR03797 526 RRQLGVVLQNGRLMSG-SIFENIAGGAP---L----TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL 597 (686)
T ss_pred HhccEEEccCCccCcc-cHHHHHhcCCC---C----CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 9999999999999987 99999987422 2 2445667777776642 0112234567999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+|++||
T Consensus 598 alARAll~~p~iLiLD 613 (686)
T TIGR03797 598 LIARALVRKPRILLFD 613 (686)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
No 259
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.95 E-value=5e-27 Score=242.46 Aligned_cols=150 Identities=18% Similarity=0.230 Sum_probs=121.0
Q ss_pred EEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-----HHH
Q 003716 628 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDR 702 (800)
Q Consensus 628 ~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-----~~~ 702 (800)
.+.|+.+.|++ .+.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 2 ~~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (218)
T cd03290 2 QVTNGYFSWGS-----GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76 (218)
T ss_pred eeeeeEEecCC-----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchh
Confidence 57899999974 24699999999999999999999999999999999999999999999999987531 123
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrR 773 (800)
.++.+||++|++.++ ..|++||+.+.... . .+..++.++.+++.+ +...++++.+||||||||
T Consensus 77 ~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qr 148 (218)
T cd03290 77 NRYSVAYAAQKPWLL-NATVEENITFGSPF---N----KQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQR 148 (218)
T ss_pred hcceEEEEcCCCccc-cccHHHHHhhcCcC---C----HHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHH
Confidence 456799999999888 57999999874321 1 122344455555431 012456789999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++||+||+.+|+++|||
T Consensus 149 v~laral~~~p~illlD 165 (218)
T cd03290 149 ICVARALYQNTNIVFLD 165 (218)
T ss_pred HHHHHHHhhCCCEEEEe
Confidence 99999999999999999
No 260
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.94 E-value=4.3e-27 Score=235.79 Aligned_cols=123 Identities=27% Similarity=0.471 Sum_probs=109.8
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++|+++.|+++ ++.+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.......++.
T Consensus 1 i~~~~~~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (178)
T cd03247 1 LSINNVSFSYPEQ----EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76 (178)
T ss_pred CEEEEEEEEeCCC----CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhh
Confidence 4689999999642 136999999999999999999999999999999999999999999999999875433445678
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+||++.+++ .|++||+ +.+||||||||++||||++.+|++
T Consensus 77 i~~~~q~~~~~~-~tv~~~i------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 77 ISVLNQRPYLFD-TTLRNNL------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEEEccCCeeec-ccHHHhh------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999998886 6999987 567999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 120 lllD 123 (178)
T cd03247 120 VLLD 123 (178)
T ss_pred EEEE
Confidence 9999
No 261
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.94 E-value=4.9e-27 Score=247.76 Aligned_cols=140 Identities=21% Similarity=0.272 Sum_probs=121.6
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhcceEEecCCCCCCCCCCHHHH
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREH 725 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~~IGycpQ~~~L~~~LTv~E~ 725 (800)
+|+|+||++++||++||+|+||||||||+++|+|++++ +|+|+++|+++.. ...+.++.+||+||++.+++.+|++||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n 89 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY 89 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence 79999999999999999999999999999999999864 9999999999854 334556679999999988888999999
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC-------CCcEEEEc
Q 003716 726 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG-------NPKVRLSL 790 (800)
Q Consensus 726 L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig-------~P~vlLLD 790 (800)
+.+.... +....+..+.++++++.++|. +..++++++||||||||++||+||+. +|+++|||
T Consensus 90 l~~~~~~-~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 90 LTLHQPD-KTRTEAVASALNEVAEALGLD--DKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHhcCcc-CCCcHHHHHHHHHHHHHcCCH--hHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 9876322 223344566789999999996 47899999999999999999999998 67999999
No 262
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.94 E-value=8.5e-27 Score=234.62 Aligned_cols=122 Identities=23% Similarity=0.338 Sum_probs=110.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~ 702 (800)
.+++++|++|.| +++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|+++... .+.
T Consensus 3 ~~l~~~~l~~~~----------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 72 (182)
T cd03215 3 PVLEVRGLSVKG----------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA 72 (182)
T ss_pred cEEEEeccEEEe----------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHH
Confidence 368999999987 79999999999999999999999999999999999999999999999998653 234
Q ss_pred hhcceEEecCCC---CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 703 IYTSMGVCPQED---LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 703 ~r~~IGycpQ~~---~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
.++.+||+||+. .+++.+|++||+.+... ||||||||+++|+|
T Consensus 73 ~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------LS~G~~qrl~la~a 118 (182)
T cd03215 73 IRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------LSGGNQQKVVLARW 118 (182)
T ss_pred HhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------cCHHHHHHHHHHHH
Confidence 567899999984 58888999999976421 99999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|+++|||
T Consensus 119 l~~~p~llllD 129 (182)
T cd03215 119 LARDPRVLILD 129 (182)
T ss_pred HccCCCEEEEC
Confidence 99999999999
No 263
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.94 E-value=5.1e-27 Score=272.65 Aligned_cols=154 Identities=25% Similarity=0.444 Sum_probs=130.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.|+++|+++.|++. ++++++|+||++++||.++|+||||||||||+|+|+|+++|++|+|.++|.++.+ +.+..|
T Consensus 320 ~i~~~~v~f~y~~~----~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 320 SLEFSGLSVAYPGR----RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred eEEEEEEEEECCCC----CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 69999999999752 2469999999999999999999999999999999999999999999999999975 557788
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRLs 775 (800)
+++||+||++.+|+. |++||+.+... .. .+++++++++..++.+ +....+...+||||||||++
T Consensus 396 ~~i~~v~Q~~~lf~~-ti~~Ni~~~~~--~~----~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~ 468 (529)
T TIGR02857 396 DQIAWVPQHPFLFAG-TIAENIRLARP--DA----SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLA 468 (529)
T ss_pred hheEEEcCCCcccCc-CHHHHHhccCC--CC----CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHH
Confidence 999999999999985 99999987431 11 2345666777766642 01223456789999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
+||||+.+|++++||
T Consensus 469 laRal~~~~~ililD 483 (529)
T TIGR02857 469 LARAFLRDAPLLLLD 483 (529)
T ss_pred HHHHHhcCCCEEEEe
Confidence 999999999999999
No 264
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.94 E-value=3.7e-27 Score=282.98 Aligned_cols=155 Identities=21% Similarity=0.361 Sum_probs=129.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|++++|++. ++.+++|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||.|+.. +.+.+
T Consensus 476 ~~I~~~~vsf~y~~~----~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 476 GYVELRNITFGYSPL----EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred CeEEEEEEEEecCCC----CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHH
Confidence 469999999999752 3569999999999999999999999999999999999999999999999999975 56778
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|++|||+||++.+|+. |++||+.++.. ..+ ++++.++++..++.+ +....+....||||||||+
T Consensus 552 r~~i~~v~Q~~~lf~g-Ti~eNi~l~~~--~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRi 624 (710)
T TIGR03796 552 ANSVAMVDQDIFLFEG-TVRDNLTLWDP--TIP----DADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRL 624 (710)
T ss_pred HhheeEEecCChhhhc-cHHHHhhCCCC--CCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHH
Confidence 9999999999999986 99999987421 122 344555566555532 0123345577999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+|++||
T Consensus 625 aLARall~~p~iliLD 640 (710)
T TIGR03796 625 EIARALVRNPSILILD 640 (710)
T ss_pred HHHHHHhhCCCEEEEE
Confidence 9999999999999999
No 265
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.94 E-value=5.7e-27 Score=239.59 Aligned_cols=143 Identities=24% Similarity=0.379 Sum_probs=114.2
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++||+|.|+++.+ ..+.+++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~-~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQ-ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------S 67 (204)
T ss_pred CEEeEEEEecCCCCc-cccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------------E
Confidence 468999999974210 013699999999999999999999999999999999999999999999998 5
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC---------CCccccccCCCCChhHHHHHHHH
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF---------HGGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~---------~~~~~d~~~~~LSGG~KrRLsiA 777 (800)
|||+||++.+++ +|++||+.+.... ..+ ...+.++.+++. .+...++++.+||||||||++||
T Consensus 68 i~~~~q~~~l~~-~t~~enl~~~~~~---~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~la 139 (204)
T cd03250 68 IAYVSQEPWIQN-GTIRENILFGKPF---DEE----RYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLA 139 (204)
T ss_pred EEEEecCchhcc-CcHHHHhccCCCc---CHH----HHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHH
Confidence 999999999884 6999999874322 111 122223222221 01245678899999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
|||+.+|++++||
T Consensus 140 ral~~~p~llllD 152 (204)
T cd03250 140 RAVYSDADIYLLD 152 (204)
T ss_pred HHHhcCCCEEEEe
Confidence 9999999999999
No 266
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.94 E-value=5.7e-27 Score=281.35 Aligned_cols=156 Identities=23% Similarity=0.445 Sum_probs=130.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|+++ +++.+++|+||+|++||.++|+|||||||||++|+|.|+++|++|+|++||+++++ +.+..
T Consensus 477 ~~I~~~nVsf~Y~~~---~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR---PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred CeEEEEEEEEECCCC---CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 359999999999753 23579999999999999999999999999999999999999999999999999975 56778
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|++|||+||++.+|+. |++|||.+... ..+ ++++.++++..++.+ +...++...+||||||||+
T Consensus 554 r~~i~~v~Q~~~lF~g-TIreNI~~g~~--~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRl 626 (711)
T TIGR00958 554 HRQVALVGQEPVLFSG-SVRENIAYGLT--DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRI 626 (711)
T ss_pred HhhceEEecCcccccc-CHHHHHhcCCC--CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHH
Confidence 8999999999999986 99999986421 112 445666677666542 0122334567999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||||++.+|+|++||
T Consensus 627 alARALl~~p~ILILD 642 (711)
T TIGR00958 627 AIARALVRKPRVLILD 642 (711)
T ss_pred HHHHHHhcCCCEEEEE
Confidence 9999999999999999
No 267
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.94 E-value=6.5e-27 Score=274.57 Aligned_cols=153 Identities=26% Similarity=0.413 Sum_probs=132.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|++. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++++ +.+..
T Consensus 337 ~~i~~~~v~f~y~~~----~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~ 412 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ----PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAAL 412 (574)
T ss_pred CeEEEEEEEEECCCC----CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH
Confidence 459999999999742 2469999999999999999999999999999999999999999999999999976 56678
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCcccc----------ccCCCCChhHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD----------KQAGKYSGGMKRR 773 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d----------~~~~~LSGG~KrR 773 (800)
|+.|||+||++.+|+. |++||+.+... +..+++++++++.+++.+ ..+ +...+||||||||
T Consensus 413 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~------~~~~~~i~~al~~~~l~~--~i~~p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 413 RQAISVVSQRVHLFSA-TLRDNLLLAAP------NASDEALIEVLQQVGLEK--LLEDDKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred HhheeEEcccchhhcc-cHHHHhhcCCC------ccCHHHHHHHHHHcCCHH--HHcCccccCchhcCCCCCCCHHHHHH
Confidence 8999999999999986 99999987431 123557788888888863 322 2566799999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++||||++.+|++++||
T Consensus 484 ialARall~~~~ililD 500 (574)
T PRK11160 484 LGIARALLHDAPLLLLD 500 (574)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 99999999999999999
No 268
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.8e-27 Score=262.44 Aligned_cols=154 Identities=25% Similarity=0.436 Sum_probs=131.9
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~ 702 (800)
...|+++|++..|+. ++++|+++||+|++||-+||+|+|||||||++|+|.++.. .+|+|+|||+|+++ ..+.
T Consensus 349 ~~~I~F~dV~f~y~~-----k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~S 422 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGP-----KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLES 422 (591)
T ss_pred CCcEEEEeeEEEeCC-----CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHH
Confidence 346999999999984 3569999999999999999999999999999999999999 99999999999976 6677
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC---------ccccccCCCCChhHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG---------GVADKQAGKYSGGMKRR 773 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~---------~~~d~~~~~LSGG~KrR 773 (800)
.|+.|||+||+..||++ |+.+|+.+. ... ...++|.+..++.++.+. ....++...||||||||
T Consensus 423 lR~~Ig~VPQd~~LFnd-TIl~NI~YG-n~s-----as~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQr 495 (591)
T KOG0057|consen 423 LRQSIGVVPQDSVLFND-TILYNIKYG-NPS-----ASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQR 495 (591)
T ss_pred hhhheeEeCCcccccch-hHHHHhhcC-CCC-----cCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHH
Confidence 89999999999999998 999999853 221 224566777777777530 11344566899999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|++|||++.||+|+++|
T Consensus 496 vslaRa~lKda~Il~~D 512 (591)
T KOG0057|consen 496 VSLARAFLKDAPILLLD 512 (591)
T ss_pred HHHHHHHhcCCCeEEec
Confidence 99999999999999999
No 269
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.2e-26 Score=247.62 Aligned_cols=162 Identities=24% Similarity=0.360 Sum_probs=139.5
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC-C----CcceEEECCeecCcc--
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-T----TSGTAYVQGLDIRTD-- 699 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~-p----tsG~I~i~G~~i~~~-- 699 (800)
++++||+..|...++ ...||+||||+|++||++||+|.+|||||||.+.|.|+++ | ++|+|.++|+++..-
T Consensus 2 L~v~nL~v~f~~~~g--~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 2 LEVKNLSVSFPTDAG--VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred ceEeeeEEEEecCCc--cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 689999999976433 4689999999999999999999999999999999999998 4 679999999998542
Q ss_pred --HHHhh-cceEEecCCC--CCCCCCCHHHHHHHHhhhcC-C-CchhHHHHHHHHHHHcCCCCC-ccccccCCCCChhHH
Q 003716 700 --MDRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLKN-L-KGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMK 771 (800)
Q Consensus 700 --~~~~r-~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg-~-~~~~~~~~v~~~L~~l~L~~~-~~~d~~~~~LSGG~K 771 (800)
+.++| +.|+++||++ .|.|-+|+.+.+.-..+.++ . .+++..+++.++|+.++|.+. ...+.++.+||||||
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 22444 5799999995 68999999999987666543 3 456778899999999999852 377999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEc
Q 003716 772 RRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 772 rRLsiA~ALig~P~vlLLD 790 (800)
|||.||+||+.+|++|+.|
T Consensus 160 QRV~IAmala~~P~LlIAD 178 (316)
T COG0444 160 QRVMIAMALALNPKLLIAD 178 (316)
T ss_pred HHHHHHHHHhCCCCEEEeC
Confidence 9999999999999999999
No 270
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.94 E-value=6.3e-27 Score=274.80 Aligned_cols=155 Identities=19% Similarity=0.381 Sum_probs=128.5
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.++++|+++.|++. ++.+++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|+++|.++.. +.+..+
T Consensus 341 ~i~~~~vsf~y~~~----~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~ 416 (582)
T PRK11176 341 DIEFRNVTFTYPGK----EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLR 416 (582)
T ss_pred eEEEEEEEEecCCC----CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHH
Confidence 59999999999742 3569999999999999999999999999999999999999999999999999975 556788
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRLs 775 (800)
+.|||+||++.+|+. |++||+.+.. +.+..+++++++++..++.+ +....+...+||||||||++
T Consensus 417 ~~i~~v~Q~~~lf~~-Ti~~Ni~~~~-----~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~ 490 (582)
T PRK11176 417 NQVALVSQNVHLFND-TIANNIAYAR-----TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490 (582)
T ss_pred hhceEEccCceeecc-hHHHHHhcCC-----CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHH
Confidence 999999999999986 9999998642 11112445666666666431 01223344679999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
|||||+.+|+|++||
T Consensus 491 LARall~~~~ililD 505 (582)
T PRK11176 491 IARALLRDSPILILD 505 (582)
T ss_pred HHHHHHhCCCEEEEE
Confidence 999999999999999
No 271
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.94 E-value=4.8e-27 Score=281.94 Aligned_cols=155 Identities=19% Similarity=0.344 Sum_probs=128.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|++ ++.+++|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|+++|.++.+ +.+..
T Consensus 472 ~~I~~~~vsf~y~~-----~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 472 GDIVINDVSYSYGY-----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred CcEEEEEEEEEcCC-----CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHH
Confidence 46999999999963 2469999999999999999999999999999999999999999999999999965 56778
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|++|||+||++.+|+. |++||+.+... ...+ ++++.++++..++.+ +....+...+||||||||+
T Consensus 547 r~~i~~v~Q~~~lf~g-TI~eNi~l~~~-~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRi 620 (708)
T TIGR01193 547 RQFINYLPQEPYIFSG-SILENLLLGAK-ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRI 620 (708)
T ss_pred HHheEEEecCceehhH-HHHHHHhccCC-CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHH
Confidence 9999999999999987 99999997532 1222 334455555554421 1123445678999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||||++.+|+|++||
T Consensus 621 alARall~~p~iliLD 636 (708)
T TIGR01193 621 ALARALLTDSKVLILD 636 (708)
T ss_pred HHHHHHhhCCCEEEEe
Confidence 9999999999999999
No 272
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=1.9e-27 Score=246.77 Aligned_cols=144 Identities=28% Similarity=0.391 Sum_probs=133.7
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEec-CCCCCCCCCCHH
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCP-QEDLLWETLTGR 723 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycp-Q~~~L~~~LTv~ 723 (800)
..||+||||+|++||++|++|+||||||||+|||+|++.|++|.|.++|++...+.++.-+++|++. |.-.+|-++.+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 4699999999999999999999999999999999999999999999999998776666667888875 777888888899
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 724 E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
|.+..-..++.++.++-+++.+.+.+.++|+ +..+.+++.||-|||+|+.+|.||+++|+|+|||
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~--~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLD 181 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLE--GFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLD 181 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcch--hhhhhhhhhccchHHHHHHHHHHhcCCCcEEEec
Confidence 9999888889999999999999999999997 5899999999999999999999999999999999
No 273
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.94 E-value=8.3e-27 Score=247.15 Aligned_cols=156 Identities=17% Similarity=0.267 Sum_probs=125.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|++. .+.+++++||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. ...+.
T Consensus 18 ~~i~~~~l~~~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 18 GEIKIHDLCVRYENN----LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred ceEEEEEEEEEeCCC----CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 569999999999642 2469999999999999999999999999999999999999999999999999864 34556
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCccccccCCCCChhHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSV 776 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~-----~v~~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsi 776 (800)
++.+||+||++.+++. |++||+..... .......+ .+++.++.+ ++. ...++.+.+||||||||+++
T Consensus 94 ~~~i~~v~q~~~l~~~-tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~--~~~~~~~~~LS~G~~qrl~l 167 (257)
T cd03288 94 RSRLSIILQDPILFSG-SIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLD--AVVTEGGENFSVGQRQLFCL 167 (257)
T ss_pred hhhEEEECCCCccccc-HHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccC--cEeccCCCcCCHHHHHHHHH
Confidence 7889999999988874 99999864211 01111111 133444444 454 35677889999999999999
Q ss_pred HHHHcCCCcEEEEc
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 A~ALig~P~vlLLD 790 (800)
||||+.+|++++||
T Consensus 168 aral~~~p~llllD 181 (257)
T cd03288 168 ARAFVRKSSILIMD 181 (257)
T ss_pred HHHHhcCCCEEEEe
Confidence 99999999999999
No 274
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.94 E-value=1.1e-26 Score=273.55 Aligned_cols=153 Identities=20% Similarity=0.323 Sum_probs=130.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..++++|+++.|++ ++.+++|+||++++||.+||+|+||||||||+|+|+|+++|++|+|.++|.++.. +.+..
T Consensus 339 ~~i~~~~v~f~y~~-----~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 339 GRIDIDNVSFAYRD-----DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred CeEEEEEEEEEeCC-----CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHH
Confidence 35999999999973 2469999999999999999999999999999999999999999999999999975 56778
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|++|||+||++.+|+. |++||+.++. ..+ +++++++++.+|+.+ +....+....||||||||+
T Consensus 414 ~~~i~~v~Q~~~lF~~-Ti~~NI~~~~---~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRi 485 (592)
T PRK10790 414 RQGVAMVQQDPVVLAD-TFLANVTLGR---DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLL 485 (592)
T ss_pred HhheEEEccCCccccc-hHHHHHHhCC---CCC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 9999999999999998 9999999853 222 345666777766542 0122334567999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+|++||
T Consensus 486 alARaLl~~~~illlD 501 (592)
T PRK10790 486 ALARVLVQTPQILILD 501 (592)
T ss_pred HHHHHHHhCCCEEEEe
Confidence 9999999999999999
No 275
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.94 E-value=8e-27 Score=268.78 Aligned_cols=149 Identities=16% Similarity=0.149 Sum_probs=127.4
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
+|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.. .....+
T Consensus 3 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~ 76 (490)
T PRK10938 3 SLQISQGTFRLSD------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQ 76 (490)
T ss_pred eEEEEeEEEEcCC------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHH
Confidence 5899999999964 459999999999999999999999999999999999999999999999987743 233445
Q ss_pred cceEEecCCCCC--C-C-----CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHH
Q 003716 705 TSMGVCPQEDLL--W-E-----TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 776 (800)
Q Consensus 705 ~~IGycpQ~~~L--~-~-----~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsi 776 (800)
+.+||+||++.+ + + .+|++|++.+. .+.+++++++++.++|. ++.++++++|||||||||+|
T Consensus 77 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 77 KLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGIT--ALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred HHhceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCH--hhhhCCcccCCHHHHHHHHH
Confidence 679999998643 1 1 46888877531 12356788999999996 47899999999999999999
Q ss_pred HHHHcCCCcEEEEc
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 A~ALig~P~vlLLD 790 (800)
|+||+.+|+++|||
T Consensus 147 a~al~~~p~lllLD 160 (490)
T PRK10938 147 CQALMSEPDLLILD 160 (490)
T ss_pred HHHHHcCCCEEEEc
Confidence 99999999999999
No 276
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.94 E-value=3e-26 Score=272.24 Aligned_cols=162 Identities=25% Similarity=0.377 Sum_probs=141.7
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHH-
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR- 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~- 702 (800)
.+++++|+++.|++.+ +.+.+++++||++++||+++|+|+||||||||+++|+|+++|++|++.++|+++... .++
T Consensus 3 ~~l~~~nl~~~y~~~~--~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~ 80 (648)
T PRK10535 3 ALLELKDIRRSYPSGE--EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80 (648)
T ss_pred cEEEEeeEEEEeCCCC--CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHH
Confidence 3689999999996421 135699999999999999999999999999999999999999999999999998652 222
Q ss_pred --h-hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHH
Q 003716 703 --I-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 703 --~-r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
. ++.+||+||+..+++++|+.||+.+.....+...++.++++.++++.++|. +..|+++++||||||||++||||
T Consensus 81 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~~~LS~Gq~qrv~LAra 158 (648)
T PRK10535 81 AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLE--DRVEYQPSQLSGGQQQRVSIARA 158 (648)
T ss_pred HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hhhcCCcccCCHHHHHHHHHHHH
Confidence 2 468999999999999999999998765555555566677889999999997 47899999999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
|+.+|++++||
T Consensus 159 L~~~P~lLllD 169 (648)
T PRK10535 159 LMNGGQVILAD 169 (648)
T ss_pred HhcCCCEEEEE
Confidence 99999999999
No 277
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.1e-26 Score=233.87 Aligned_cols=129 Identities=25% Similarity=0.382 Sum_probs=113.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCcceEEECCeecCccHHHh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~--~ptsG~I~i~G~~i~~~~~~~ 703 (800)
.++++|+++.|++.. .++.+++++||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++. ...
T Consensus 3 ~l~~~~l~~~~~~~~--~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~---~~~ 77 (192)
T cd03232 3 VLTWKNLNYTVPVKG--GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD---KNF 77 (192)
T ss_pred EEEEeeeEEEecCCC--CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH---HHh
Confidence 588999999996421 1256999999999999999999999999999999999986 489999999999885 455
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
++.++|++|++.+++.+|++||+.+....+ +||||||||+++|+||+.+
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------~LSgGe~qrv~la~al~~~ 126 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------GLSVEQRKRLTIGVELAAK 126 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------cCCHHHhHHHHHHHHHhcC
Confidence 678999999999999999999998632100 7999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|++++||
T Consensus 127 p~vlllD 133 (192)
T cd03232 127 PSILFLD 133 (192)
T ss_pred CcEEEEe
Confidence 9999999
No 278
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.94 E-value=1.9e-26 Score=230.28 Aligned_cols=120 Identities=33% Similarity=0.626 Sum_probs=108.5
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
++++|+++.|++. ++.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (173)
T cd03246 1 LEVENVSFRYPGA----EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGD 76 (173)
T ss_pred CEEEEEEEEcCCC----CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHh
Confidence 4689999999642 2469999999999999999999999999999999999999999999999998854 3345677
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.++|++|++.+++. |++||+ ||||||||++||+||+.+|+
T Consensus 77 ~i~~~~q~~~~~~~-tv~~~l---------------------------------------LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 77 HVGYLPQDDELFSG-SIAENI---------------------------------------LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred heEEECCCCccccC-cHHHHC---------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 89999999988874 999987 99999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
++|||
T Consensus 117 ~lllD 121 (173)
T cd03246 117 ILVLD 121 (173)
T ss_pred EEEEE
Confidence 99999
No 279
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.94 E-value=2.5e-26 Score=268.00 Aligned_cols=157 Identities=28% Similarity=0.503 Sum_probs=129.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..++++|+++.|++. ++.+++|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|+++.. +.+..
T Consensus 315 ~~i~~~~v~~~y~~~----~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 315 GHLSVENVTIVPPGG----KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred CeEEEEEEEEEcCCC----CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHH
Confidence 359999999999642 3579999999999999999999999999999999999999999999999999865 45667
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHH-----HHHHHHHc--CCCCCccccccCCCCChhHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA-----VEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSV 776 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~-----v~~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsi 776 (800)
|+.+||+||++.+++. |++||+.++.. ..+.++..+. +++.++.+ |+. ...++...+||||||||+++
T Consensus 391 ~~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~--t~~~~~g~~LSgGq~qrl~l 465 (544)
T TIGR01842 391 GKHIGYLPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYD--TVIGPGGATLSGGQRQRIAL 465 (544)
T ss_pred hhheEEecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccc--cccCCCcCCCCHHHHHHHHH
Confidence 8899999999999987 99999986431 1222332222 23445554 343 34567788999999999999
Q ss_pred HHHHcCCCcEEEEc
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 A~ALig~P~vlLLD 790 (800)
|||++.+|++++||
T Consensus 466 ARall~~~~ililD 479 (544)
T TIGR01842 466 ARALYGDPKLVVLD 479 (544)
T ss_pred HHHHhcCCCEEEEe
Confidence 99999999999999
No 280
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2e-26 Score=229.64 Aligned_cols=120 Identities=31% Similarity=0.622 Sum_probs=107.8
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
++++|++|.|+++ ...+++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. .....++
T Consensus 1 l~~~~l~~~~~~~----~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (171)
T cd03228 1 IEFKNVSFSYPGR----PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK 76 (171)
T ss_pred CEEEEEEEEcCCC----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHh
Confidence 4689999999742 1369999999999999999999999999999999999999999999999998854 3345567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
.+||+||++.+++ .|++||+ ||||||||+++|+||+.+|+
T Consensus 77 ~i~~~~~~~~~~~-~t~~e~l---------------------------------------LS~G~~~rl~la~al~~~p~ 116 (171)
T cd03228 77 NIAYVPQDPFLFS-GTIRENI---------------------------------------LSGGQRQRIAIARALLRDPP 116 (171)
T ss_pred hEEEEcCCchhcc-chHHHHh---------------------------------------hCHHHHHHHHHHHHHhcCCC
Confidence 8999999998886 5999887 99999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
++|||
T Consensus 117 llllD 121 (171)
T cd03228 117 ILILD 121 (171)
T ss_pred EEEEE
Confidence 99999
No 281
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=2.5e-26 Score=268.62 Aligned_cols=148 Identities=27% Similarity=0.330 Sum_probs=126.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
++|+++||+|.|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~~-----~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~---------- 69 (556)
T PRK11819 5 YIYTMNRVSKVVPP-----KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG---------- 69 (556)
T ss_pred EEEEEeeEEEEeCC-----CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------
Confidence 57999999999962 256999999999999999999999999999999999999999999999751
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhh-hc-------------CCCc----------------------hhHHHHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGR-LK-------------NLKG----------------------PALTQAVEESL 748 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~-lk-------------g~~~----------------------~~~~~~v~~~L 748 (800)
..|||+||++.+++.+|++|++.+... ++ +... .+.++++++++
T Consensus 70 ~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 149 (556)
T PRK11819 70 IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAM 149 (556)
T ss_pred CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 469999999999999999999986321 10 1110 11245688899
Q ss_pred HHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 749 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 749 ~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+.++|. ..++++++|||||||||+||+||+.+|+++|||
T Consensus 150 ~~~gl~---~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLD 188 (556)
T PRK11819 150 DALRCP---PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLD 188 (556)
T ss_pred HhCCCC---cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 999994 368999999999999999999999999999999
No 282
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=2.1e-26 Score=237.17 Aligned_cols=135 Identities=30% Similarity=0.452 Sum_probs=121.3
Q ss_pred CcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCH
Q 003716 643 PEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTG 722 (800)
Q Consensus 643 ~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv 722 (800)
..+.||+||||++++||.+||+|+||||||||+|+|+|.++||+|+|.++|+--. - + .+| -.+-+++|+
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~-l---i--~lg-----~Gf~pelTG 106 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAP-L---I--ELG-----AGFDPELTG 106 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEeh-h---h--hcc-----cCCCcccch
Confidence 3578999999999999999999999999999999999999999999999986321 0 0 011 124567899
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 723 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 723 ~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+||+.+.+.+.|++++++++.++++.+.-+|. ++.|+++++||.||+-||++|+|...+|+|+|||
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG--~fi~~PvktYSSGM~aRLaFsia~~~~pdILllD 172 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELG--DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLD 172 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH--HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEe
Confidence 99999999999999999999999999999996 5999999999999999999999999999999999
No 283
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.94 E-value=2.4e-26 Score=269.32 Aligned_cols=156 Identities=26% Similarity=0.487 Sum_probs=128.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|++ ++++++|+||++++||.+||+||+||||||+++.|.|+++|++|+|++||+|++. +.+..
T Consensus 327 ~~I~f~~vsf~y~~-----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 327 GSIEFENVSFSYPG-----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred CeEEEEEEEEEcCC-----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH
Confidence 34999999999974 3679999999999999999999999999999999999999999999999999976 66788
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHH-----HHHHc--CCCCCccccccCCCCChhHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE-----SLKSV--NLFHGGVADKQAGKYSGGMKRRLSV 776 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~-----~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsi 776 (800)
|++|||+||++.||. -|++||+.+...- .+++++.++++. .++.+ |++ ....+....||||||||++|
T Consensus 402 r~~I~~V~Qd~~LF~-~TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~d--t~vge~G~~LSgGQrQrlai 476 (567)
T COG1132 402 RKRIGIVSQDPLLFS-GTIRENIALGRPD--ATDEEIEEALKLANAHEFIANLPDGYD--TIVGERGVNLSGGQRQRLAI 476 (567)
T ss_pred HHhccEEcccceeec-ccHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhCccccc--ceecCCCccCCHHHHHHHHH
Confidence 999999999999999 5999999975321 233333333222 23333 232 23344556899999999999
Q ss_pred HHHHcCCCcEEEEc
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 A~ALig~P~vlLLD 790 (800)
|||++.+|+|++||
T Consensus 477 ARall~~~~ILILD 490 (567)
T COG1132 477 ARALLRNPPILILD 490 (567)
T ss_pred HHHHhcCCCEEEEe
Confidence 99999999999999
No 284
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.94 E-value=2.2e-26 Score=275.69 Aligned_cols=155 Identities=24% Similarity=0.435 Sum_probs=129.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|++. ++.+++|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. +.+..
T Consensus 462 ~~I~~~~vsf~Y~~~----~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~l 537 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQ----ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL 537 (694)
T ss_pred ceEEEEEEEEEeCCC----CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH
Confidence 469999999999742 3569999999999999999999999999999999999999999999999999975 56778
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|++||||||++.+|+. |++|||.+... ..+ ++++.++++..++.+ +....+...+||||||||+
T Consensus 538 r~~i~~v~Q~~~lf~~-TI~eNi~~~~~--~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRl 610 (694)
T TIGR03375 538 RRNIGYVPQDPRLFYG-TLRDNIALGAP--YAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAV 610 (694)
T ss_pred HhccEEECCChhhhhh-hHHHHHhCCCC--CCC----HHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHH
Confidence 9999999999999986 99999987421 122 344555555555431 0123345668999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|++++||
T Consensus 611 alARall~~p~iliLD 626 (694)
T TIGR03375 611 ALARALLRDPPILLLD 626 (694)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
No 285
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.7e-26 Score=265.75 Aligned_cols=148 Identities=22% Similarity=0.330 Sum_probs=125.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|. +
T Consensus 1 ml~i~~ls~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~ 64 (530)
T PRK15064 1 MLSTANITMQFGA------KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----------E 64 (530)
T ss_pred CEEEEEEEEEeCC------cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------C
Confidence 4789999999963 46999999999999999999999999999999999999999999999873 3
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhh-h----------cCCC---------------------chhHHHHHHHHHHHcCC
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGR-L----------KNLK---------------------GPALTQAVEESLKSVNL 753 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~-l----------kg~~---------------------~~~~~~~v~~~L~~l~L 753 (800)
.+||+||++.+++.+|++|++.+... . .+.+ ..+.+++++++++.++|
T Consensus 65 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 144 (530)
T PRK15064 65 RLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI 144 (530)
T ss_pred EEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Confidence 59999999999999999999875210 0 0100 11234578899999999
Q ss_pred CCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 754 FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 754 ~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.+ ...++++++|||||||||+||+||+.+|+|+|||
T Consensus 145 ~~-~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLD 180 (530)
T PRK15064 145 PE-EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLD 180 (530)
T ss_pred Ch-hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 63 2346789999999999999999999999999999
No 286
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.94 E-value=6.1e-26 Score=258.60 Aligned_cols=149 Identities=26% Similarity=0.350 Sum_probs=127.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.++.++||++.|+++ ..+.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 20 ~mL~lknL~~~~~~~---~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~-------- 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDG---EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA-------- 88 (549)
T ss_pred ceeEEEEEEEecCCC---ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee--------
Confidence 468899999888652 135799999999999999999999999999999999999999999999999752
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
.++ +...+.+.+|++||+.+.....+....+..+.++++++.+++. +..++++++||||||||++|||||+.+|
T Consensus 89 -~i~---~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~--~~ld~~~~~LSGGQrQRVaLArAL~~~P 162 (549)
T PRK13545 89 -LIA---ISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIG--KFIYQPVKTYSSGMKSRLGFAISVHINP 162 (549)
T ss_pred -eEE---eccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCCh--hHhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 122 2345677799999998866555555556667788999999996 4789999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+++|||
T Consensus 163 ~LLLLD 168 (549)
T PRK13545 163 DILVID 168 (549)
T ss_pred CEEEEE
Confidence 999999
No 287
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.94 E-value=1.8e-26 Score=231.94 Aligned_cols=121 Identities=31% Similarity=0.560 Sum_probs=108.8
Q ss_pred EEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhcc
Q 003716 628 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTS 706 (800)
Q Consensus 628 ~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~~ 706 (800)
+++|++|.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.. ...+.++.
T Consensus 1 ~~~~l~~~~~~------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~ 74 (180)
T cd03214 1 EVENLSVGYGG------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK 74 (180)
T ss_pred CeeEEEEEECC------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHH
Confidence 36899999963 469999999999999999999999999999999999999999999999999864 33455667
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+|| +++.+++. +..++++.+||||||||+++||||+.+|++
T Consensus 75 i~~~~q----------------------------------~l~~~gl~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 118 (180)
T cd03214 75 IAYVPQ----------------------------------ALELLGLA--HLADRPFNELSGGERQRVLLARALAQEPPI 118 (180)
T ss_pred HhHHHH----------------------------------HHHHcCCH--hHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999998 67778886 367889999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 119 lllD 122 (180)
T cd03214 119 LLLD 122 (180)
T ss_pred EEEe
Confidence 9999
No 288
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.94 E-value=3.4e-26 Score=263.53 Aligned_cols=160 Identities=20% Similarity=0.208 Sum_probs=128.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CcceEEECCeecCc--cH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDIRT--DM 700 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-tsG~I~i~G~~i~~--~~ 700 (800)
..+++++|++|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+.+| ++|+|+++|+++.. ..
T Consensus 258 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 258 EPRIVLNNGVVSYND------RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETI 331 (490)
T ss_pred CceEEEeceEEEECC------eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCH
Confidence 357999999999963 4699999999999999999999999999999999998876 79999999987632 22
Q ss_pred HHhhcceEEecCCCCCCC--CCCHHHHHHHHh----hhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHH
Q 003716 701 DRIYTSMGVCPQEDLLWE--TLTGREHLLFYG----RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 701 ~~~r~~IGycpQ~~~L~~--~LTv~E~L~~~~----~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRL 774 (800)
...++.+||++|++.++. ..+++|++.+.. ..++....+.++.++++++.++|.+ +..++++++|||||||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qrv 410 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDK-RTADAPFHSLSWGQQRLA 410 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCch-hhccCchhhCCHHHHHHH
Confidence 345678999999876544 346766654321 1111112334567899999999962 268999999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
++|+||+.+|+++|||
T Consensus 411 ~la~al~~~p~lllLD 426 (490)
T PRK10938 411 LIVRALVKHPTLLILD 426 (490)
T ss_pred HHHHHHhcCCCEEEEc
Confidence 9999999999999999
No 289
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=1.4e-26 Score=279.42 Aligned_cols=157 Identities=32% Similarity=0.552 Sum_probs=127.6
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~ 702 (800)
...|+++|+.++|+.| ++..+++|+||.|++||+++|+|||||||||++++|.+++.|++|+|+|||.|+++ +.+.
T Consensus 348 ~g~ief~nV~FsYPsR---pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~ 424 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSR---PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKW 424 (1228)
T ss_pred ccceEEEEEEecCCCC---CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHH
Confidence 3469999999999986 35789999999999999999999999999999999999999999999999999986 6677
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC-------C--CccccccCCCCChhHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF-------H--GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~-------~--~~~~d~~~~~LSGG~KrR 773 (800)
.|++||.|.|+|.||.. |++||+.+.. +. ..+++++++.+..+.. + +....++.-+||||||||
T Consensus 425 lr~~iglV~QePvlF~~-tI~eNI~~G~-----~d-at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQR 497 (1228)
T KOG0055|consen 425 LRSQIGLVSQEPVLFAT-TIRENIRYGK-----PD-ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQR 497 (1228)
T ss_pred HHhhcCeeeechhhhcc-cHHHHHhcCC-----Cc-ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHH
Confidence 89999999999998875 9999998632 11 1223333333332211 0 012233444699999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++|||||+.+|+|||||
T Consensus 498 IAIARalv~~P~ILLLD 514 (1228)
T KOG0055|consen 498 IAIARALVRNPKILLLD 514 (1228)
T ss_pred HHHHHHHHhCCCEEEec
Confidence 99999999999999999
No 290
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=1.9e-26 Score=278.34 Aligned_cols=155 Identities=28% Similarity=0.502 Sum_probs=132.1
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.|+++||++.|+.| |+.++++|+||+|++||.+||+||+||||||.+.+|-..+.|++|+|.|||+|+++ +.+.+|
T Consensus 987 ~I~~~~V~F~YPsR---P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR---PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred EEEEeeeEeeCCCC---CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence 59999999999975 57889999999999999999999999999999999999999999999999999987 778899
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcC-------CCC--CccccccCCCCChhHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN-------LFH--GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~-------L~~--~~~~d~~~~~LSGG~KrRLs 775 (800)
++||.|.|+|.||.. |++||+.+. ..+ ++. +++.++++..+ |.+ +.....+..+||||||||++
T Consensus 1064 ~~i~lVsQEP~LF~~-TIrENI~YG-~~~-vs~----~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIA 1136 (1228)
T KOG0055|consen 1064 KQIGLVSQEPVLFNG-TIRENIAYG-SEE-VSE----EEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIA 1136 (1228)
T ss_pred HhcceeccCchhhcc-cHHHHHhcc-CCC-CCH----HHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHH
Confidence 999999999999997 999999964 222 443 34444444443 322 12334456689999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||||++.||||||||
T Consensus 1137 IARAilRnPkILLLD 1151 (1228)
T KOG0055|consen 1137 IARAILRNPKILLLD 1151 (1228)
T ss_pred HHHHHHcCCCeeeee
Confidence 999999999999999
No 291
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.94 E-value=5.1e-26 Score=262.90 Aligned_cols=154 Identities=25% Similarity=0.365 Sum_probs=129.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~ 702 (800)
..++++|+++ .+++++||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... .+.
T Consensus 256 ~~l~~~~l~~-----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~ 324 (501)
T PRK10762 256 VRLKVDNLSG-----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDG 324 (501)
T ss_pred cEEEEeCccc-----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 4688999874 269999999999999999999999999999999999999999999999998542 234
Q ss_pred hhcceEEecCCC---CCCCCCCHHHHHHHHhh--hc---C-CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHH
Q 003716 703 IYTSMGVCPQED---LLWETLTGREHLLFYGR--LK---N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 703 ~r~~IGycpQ~~---~L~~~LTv~E~L~~~~~--lk---g-~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR 773 (800)
.++.+||+||++ .+++.+|++||+.+... .. + ...++.+++++++++.++|.+ +..++++++||||||||
T Consensus 325 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGekqr 403 (501)
T PRK10762 325 LANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT-PSMEQAIGLLSGGNQQK 403 (501)
T ss_pred HHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC-CCccCchhhCCHHHHHH
Confidence 567899999995 58889999999986321 11 1 222344567899999999952 36899999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|+||+||+.+|+++|||
T Consensus 404 v~lA~al~~~p~lllLD 420 (501)
T PRK10762 404 VAIARGLMTRPKVLILD 420 (501)
T ss_pred HHHHHHHhhCCCEEEEc
Confidence 99999999999999999
No 292
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.93 E-value=5.3e-26 Score=225.90 Aligned_cols=116 Identities=28% Similarity=0.355 Sum_probs=104.4
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
|+++|+++.|++ .+.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. +.
T Consensus 1 i~~~~~~~~~~~-----~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----------~~ 65 (166)
T cd03223 1 IELENLSLATPD-----GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----------ED 65 (166)
T ss_pred CEEEEEEEEcCC-----CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----------ce
Confidence 468999999963 246999999999999999999999999999999999999999999999873 57
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||++|++.++ .+|++||+.+. ++.+||||||||+++||||+.+|++
T Consensus 66 i~~~~q~~~~~-~~tv~~nl~~~--------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 66 LLFLPQRPYLP-LGTLREQLIYP--------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EEEECCCCccc-cccHHHHhhcc--------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999998765 57999998752 2478999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 113 lllD 116 (166)
T cd03223 113 VFLD 116 (166)
T ss_pred EEEE
Confidence 9999
No 293
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.93 E-value=8.7e-26 Score=256.49 Aligned_cols=164 Identities=24% Similarity=0.353 Sum_probs=141.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC----cceEEECCeecCc--
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT----SGTAYVQGLDIRT-- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt----sG~I~i~G~~i~~-- 698 (800)
..++++||++.|....+ ...||+||||+|.+||++||+|.+||||||+.++|.|++++. +|+|.++|.|+..
T Consensus 4 ~lL~V~nL~v~~~~~~~--~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~ 81 (539)
T COG1123 4 PLLEVENLTVEFATDGG--RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS 81 (539)
T ss_pred ceEEEeceEEEEecCCc--ceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCC
Confidence 47999999999986522 367999999999999999999999999999999999999987 8999999998853
Q ss_pred --cHHHhh-cceEEecCCC--CCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHH
Q 003716 699 --DMDRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 --~~~~~r-~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg-~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~Kr 772 (800)
.+.++| +.|+|+||++ .|.|-+|+.+++.-..++++ ..+++.++++.++|+.++|.+.+..++++++|||||||
T Consensus 82 ~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQ 161 (539)
T COG1123 82 EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQ 161 (539)
T ss_pred HHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHH
Confidence 233344 6799999996 46777999999987666654 45788899999999999998643336799999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|+.||+||+.+|++|++|
T Consensus 162 Rv~iAmALa~~P~LLIaD 179 (539)
T COG1123 162 RVMIAMALALKPKLLIAD 179 (539)
T ss_pred HHHHHHHHhCCCCEEEEC
Confidence 999999999999999999
No 294
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.93 E-value=3.1e-26 Score=268.18 Aligned_cols=156 Identities=20% Similarity=0.371 Sum_probs=129.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..++++|+++.|++. ++.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. +.+..
T Consensus 329 ~~i~~~~v~f~y~~~----~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 329 GDVEFRNVTFRYPGR----DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred CeEEEEEEEEEcCCC----CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHH
Confidence 359999999999742 2469999999999999999999999999999999999999999999999999865 45677
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
+++++||||++.+|+. |++|||.++. .+.. .+++++++++.+++.+ +.........||||||||+
T Consensus 405 ~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~-~~~~----~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRi 478 (571)
T TIGR02203 405 RRQVALVSQDVVLFND-TIANNIAYGR-TEQA----DRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRL 478 (571)
T ss_pred HhhceEEccCcccccc-cHHHHHhcCC-CCCC----CHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHH
Confidence 8899999999999987 9999998753 1112 2445666677666532 0112233457999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||||++.+|+|++||
T Consensus 479 aLARall~~~~illLD 494 (571)
T TIGR02203 479 AIARALLKDAPILILD 494 (571)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
No 295
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.93 E-value=3.7e-26 Score=270.21 Aligned_cols=143 Identities=29% Similarity=0.454 Sum_probs=127.9
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---cceEEECCeecCccHHHhhcceEEecCCCCCCCCC
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 720 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt---sG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~L 720 (800)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++|+++.. ...++.+|||||+|.+++.+
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~--~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA--KEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH--HHHhhhceeeccccccCccC
Confidence 467999999999999999999999999999999999999885 8999999998753 35678899999999999999
Q ss_pred CHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCccccccCC------CCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 721 TGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAG------KYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 721 Tv~E~L~~~~~lkg---~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~------~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
||+|||.|.+.++. ..+++.+++++++++.+||.+ .+|++++ .|||||||||+||+||+.+|+|++||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllD 191 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK--CANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCD 191 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchh--cCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEee
Confidence 99999999887653 334566778999999999974 6788876 49999999999999999999999999
No 296
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.93 E-value=8.4e-26 Score=264.05 Aligned_cols=148 Identities=28% Similarity=0.355 Sum_probs=124.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+++++||+|.|++ .+++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+++ +
T Consensus 3 ~~i~~~nls~~~~~-----~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~----------~ 67 (552)
T TIGR03719 3 YIYTMNRVSKVVPP-----KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP----------G 67 (552)
T ss_pred EEEEEeeEEEecCC-----CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----------C
Confidence 47899999999962 24699999999999999999999999999999999999999999999875 2
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhh-hc-------------CCCchh----------------------HHHHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGR-LK-------------NLKGPA----------------------LTQAVEESL 748 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~-lk-------------g~~~~~----------------------~~~~v~~~L 748 (800)
..|||+||++.+++.+|++||+.+... .+ +.+..+ ..+++++++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 469999999999999999999986311 10 111111 224567788
Q ss_pred HHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 749 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 749 ~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+.+++. ..++++++|||||||||+||+||+.+|+++|||
T Consensus 148 ~~~~l~---~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLD 186 (552)
T TIGR03719 148 DALRCP---PWDADVTKLSGGERRRVALCRLLLSKPDMLLLD 186 (552)
T ss_pred hhCCCC---cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 888884 368999999999999999999999999999999
No 297
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=2.7e-26 Score=225.70 Aligned_cols=164 Identities=26% Similarity=0.339 Sum_probs=140.1
Q ss_pred cEEEEeEEEEcCCCCC---CCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHH
Q 003716 626 AIISDNLRKIYPGRDG---NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMD 701 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~---~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~ 701 (800)
.++++||+|.|..+.+ +....||+.|||++++|+..|++|.||+|||||.|||+|+++||+|+|.+||+.+.- +..
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 5788999999976432 234679999999999999999999999999999999999999999999999999864 333
Q ss_pred HhhcceEEecCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHH
Q 003716 702 RIYTSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (800)
Q Consensus 702 ~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lk-g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ 778 (800)
...++|-+++|++ .+.|.+.+-+-|..-.++. .+...+..+++.+.|+.+||.+ ++++-+++.||-||||||++||
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~P-dhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLP-DHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCc-cccccchhhcCchhHHHHHHHH
Confidence 3346799999997 4778888777777654442 4556777888999999999986 7999999999999999999999
Q ss_pred HHcCCCcEEEEc
Q 003716 779 SLIGNPKVRLSL 790 (800)
Q Consensus 779 ALig~P~vlLLD 790 (800)
||+.+|+|++.|
T Consensus 163 ALIL~P~iIIaD 174 (267)
T COG4167 163 ALILRPKIIIAD 174 (267)
T ss_pred HHhcCCcEEEeh
Confidence 999999999999
No 298
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.93 E-value=5.3e-26 Score=266.57 Aligned_cols=156 Identities=23% Similarity=0.466 Sum_probs=128.7
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|++.+ ++.+++|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++.+ +....
T Consensus 336 ~~i~~~~v~f~y~~~~---~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~ 412 (576)
T TIGR02204 336 GEIEFEQVNFAYPARP---DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAEL 412 (576)
T ss_pred ceEEEEEEEEECCCCC---CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 3699999999997521 2569999999999999999999999999999999999999999999999999965 45677
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
++.||||||++.+++. |++||+.+... .. .++++++.++.+++.+ +....+....||||||||+
T Consensus 413 ~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~--~~----~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl 485 (576)
T TIGR02204 413 RARMALVPQDPVLFAA-SVMENIRYGRP--DA----TDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRI 485 (576)
T ss_pred HHhceEEccCCccccc-cHHHHHhcCCC--CC----CHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHH
Confidence 8899999999999986 99999986421 11 2345666666665531 0122344567999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
++|||++.+|++++||
T Consensus 486 ~laRal~~~~~ililD 501 (576)
T TIGR02204 486 AIARAILKDAPILLLD 501 (576)
T ss_pred HHHHHHHhCCCeEEEe
Confidence 9999999999999999
No 299
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=7.5e-26 Score=264.69 Aligned_cols=148 Identities=27% Similarity=0.364 Sum_probs=126.6
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
..+++++||++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +
T Consensus 322 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~-------- 386 (556)
T PRK11819 322 DKVIEAENLSKSFGD------RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T-------- 386 (556)
T ss_pred CeEEEEEeEEEEECC------eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c--------
Confidence 357999999999963 4699999999999999999999999999999999999999999999843 2
Q ss_pred hcceEEecCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~-~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
..|||+||+. .+++.+|++|++.+.....+.... ...++++++.+++.+ ...++++++|||||||||+||+||+.
T Consensus 387 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~la~al~~ 462 (556)
T PRK11819 387 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKG-GDQQKKVGVLSGGERNRLHLAKTLKQ 462 (556)
T ss_pred -eEEEEEeCchhhcCCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCCh-hHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 1599999996 788999999999876433332221 234567899999962 35799999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 463 ~p~lllLD 470 (556)
T PRK11819 463 GGNVLLLD 470 (556)
T ss_pred CCCEEEEc
Confidence 99999999
No 300
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.5e-26 Score=260.84 Aligned_cols=157 Identities=19% Similarity=0.296 Sum_probs=130.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~ 702 (800)
.+|+++||++.+ +.+++++||+|++||++||+||||||||||+++|+|+.+|++|+|+++|.++... .+.
T Consensus 249 ~~i~~~~l~~~~--------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 320 (491)
T PRK10982 249 VILEVRNLTSLR--------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEA 320 (491)
T ss_pred cEEEEeCccccc--------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHH
Confidence 478999999874 2489999999999999999999999999999999999999999999999998642 233
Q ss_pred hhcceEEecCCC---CCCCCCCHHHHH-----HHHhhhcCC-CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHH
Q 003716 703 IYTSMGVCPQED---LLWETLTGREHL-----LFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 703 ~r~~IGycpQ~~---~L~~~LTv~E~L-----~~~~~lkg~-~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR 773 (800)
.++.+||+||+. .+++++|+.+|. .++....+. .....++.++++++.+++.+ +..++++.+||||||||
T Consensus 321 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qr 399 (491)
T PRK10982 321 INHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT-PGHRTQIGSLSGGNQQK 399 (491)
T ss_pred HHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC-CCcccccccCCcHHHHH
Confidence 467799999984 478889888773 322222232 23445667889999999952 35799999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
|+||+|++.+|+|+|||
T Consensus 400 v~la~al~~~p~illLD 416 (491)
T PRK10982 400 VIIGRWLLTQPEILMLD 416 (491)
T ss_pred HHHHHHHhcCCCEEEEc
Confidence 99999999999999999
No 301
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=5.6e-26 Score=262.55 Aligned_cols=154 Identities=21% Similarity=0.335 Sum_probs=129.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc--cHHHh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRI 703 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~--~~~~~ 703 (800)
.+++++++. +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. .....
T Consensus 257 ~l~~~~~~~----------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 326 (501)
T PRK11288 257 RLRLDGLKG----------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAI 326 (501)
T ss_pred EEEEecccc----------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHH
Confidence 578888862 138999999999999999999999999999999999999999999999998853 23345
Q ss_pred hcceEEecCCC---CCCCCCCHHHHHHHHhhhc----C--CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQED---LLWETLTGREHLLFYGRLK----N--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~---~L~~~LTv~E~L~~~~~lk----g--~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRL 774 (800)
++.+||+||++ .+++.+|+.||+.+....+ + .+....++.++++++.+++.+ +..++++++|||||||||
T Consensus 327 ~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qrl 405 (501)
T PRK11288 327 RAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT-PSREQLIMNLSGGNQQKA 405 (501)
T ss_pred hCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc-CCccCccccCCHHHHHHH
Confidence 67899999985 4889999999998633211 1 122233457889999999942 468999999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||+||+.+|+|+|||
T Consensus 406 ~la~al~~~p~lllLD 421 (501)
T PRK11288 406 ILGRWLSEDMKVILLD 421 (501)
T ss_pred HHHHHHccCCCEEEEc
Confidence 9999999999999999
No 302
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.93 E-value=8.2e-26 Score=230.92 Aligned_cols=125 Identities=23% Similarity=0.341 Sum_probs=108.7
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCcceEEECCeecCcc-HHH-
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTD-MDR- 702 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl--~~ptsG~I~i~G~~i~~~-~~~- 702 (800)
++++|++|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~ 74 (200)
T cd03217 1 LEIKDLHVSVGG------KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74 (200)
T ss_pred CeEEEEEEEeCC------EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHH
Confidence 468999999963 4699999999999999999999999999999999999 589999999999998652 222
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
.++.++|+||++.+++.+|+++++ ++...+||||||||+++|+||+.
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~l---------------------------------~~~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 75 ARLGIFLAFQYPPEIPGVKNADFL---------------------------------RYVNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred hhCcEEEeecChhhccCccHHHHH---------------------------------hhccccCCHHHHHHHHHHHHHhc
Confidence 345699999999999888888766 11235799999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|++++||
T Consensus 122 ~p~illlD 129 (200)
T cd03217 122 EPDLAILD 129 (200)
T ss_pred CCCEEEEe
Confidence 99999999
No 303
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9.1e-26 Score=262.51 Aligned_cols=144 Identities=25% Similarity=0.321 Sum_probs=125.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+++++||+|.|++ +.+++++||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.
T Consensus 318 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---------- 381 (530)
T PRK15064 318 NALEVENLTKGFDN------GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN---------- 381 (530)
T ss_pred ceEEEEeeEEeeCC------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----------
Confidence 47999999999963 46999999999999999999999999999999999999999999999873
Q ss_pred cceEEecCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 705 TSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 705 ~~IGycpQ~~~--L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
+.+||+||+.. +++.+|++|++.++.. . ...+++++++++.+++.. +..++++++||||||||++||+||+.
T Consensus 382 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~~----~-~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 382 ANIGYYAQDHAYDFENDLTLFDWMSQWRQ----E-GDDEQAVRGTLGRLLFSQ-DDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred eEEEEEcccccccCCCCCcHHHHHHHhcc----C-CccHHHHHHHHHHcCCCh-hHhcCcccccCHHHHHHHHHHHHHhc
Confidence 46999999864 6678999999875421 1 122456889999999952 36899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 456 ~p~lllLD 463 (530)
T PRK15064 456 KPNVLVMD 463 (530)
T ss_pred CCCEEEEc
Confidence 99999999
No 304
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.93 E-value=1.2e-25 Score=264.52 Aligned_cols=154 Identities=21% Similarity=0.385 Sum_probs=127.0
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|++ .+.+++|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|+++.. +.+..
T Consensus 333 ~~I~~~~vsf~y~~-----~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~ 407 (588)
T PRK13657 333 GAVEFDDVSFSYDN-----SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASL 407 (588)
T ss_pred CeEEEEEEEEEeCC-----CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHH
Confidence 35999999999964 2358999999999999999999999999999999999999999999999999975 45678
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|++|+|+||++.+++. |++||+.+.. ...+ ++++.++++.+++.+ +....+....||||||||+
T Consensus 408 r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~--~~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRi 480 (588)
T PRK13657 408 RRNIAVVFQDAGLFNR-SIEDNIRVGR--PDAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRL 480 (588)
T ss_pred HhheEEEecCcccccc-cHHHHHhcCC--CCCC----HHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHH
Confidence 8999999999999986 9999998742 1122 334555555555421 0122344567999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+|++||
T Consensus 481 alARall~~~~iliLD 496 (588)
T PRK13657 481 AIARALLKDPPILILD 496 (588)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
No 305
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=6.1e-26 Score=228.26 Aligned_cols=157 Identities=25% Similarity=0.349 Sum_probs=135.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
+|+.+||+..-.+ +..++++||++++||+.+|+||||||||||+|.|+|.+.|++|++.++|.++.. ...+..
T Consensus 1 mi~a~nls~~~~G------r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA 74 (259)
T COG4559 1 MIRAENLSYSLAG------RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELA 74 (259)
T ss_pred CeeeeeeEEEeec------ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHH
Confidence 4788999999875 579999999999999999999999999999999999999999999999999865 445556
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCch--hHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP--ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~--~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
++-++.||+..+-...||+|-+.+...-++...+ +..+.++++|...++. .++.+...+|||||||||.+||.|++
T Consensus 75 ~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~--~la~R~y~~LSGGEqQRVqlARvLaQ 152 (259)
T COG4559 75 RHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS--GLAGRDYRTLSGGEQQRVQLARVLAQ 152 (259)
T ss_pred HHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh--hhhccchhhcCchHHHHHHHHHHHHH
Confidence 7789999998886667999999986544433233 5556689999999997 48999999999999999999999975
Q ss_pred ------CCcEEEEc
Q 003716 783 ------NPKVRLSL 790 (800)
Q Consensus 783 ------~P~vlLLD 790 (800)
+++++|||
T Consensus 153 l~~~v~~~r~L~LD 166 (259)
T COG4559 153 LWPPVPSGRWLFLD 166 (259)
T ss_pred ccCCCCCCceEEec
Confidence 56689999
No 306
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.93 E-value=1.5e-25 Score=263.53 Aligned_cols=156 Identities=21% Similarity=0.343 Sum_probs=126.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..++++|+++.|++ .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+..
T Consensus 333 ~~i~~~~v~~~y~~-----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~ 407 (585)
T TIGR01192 333 GAVEFRHITFEFAN-----SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESL 407 (585)
T ss_pred CeEEEEEEEEECCC-----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHH
Confidence 35999999999974 2458999999999999999999999999999999999999999999999999865 45677
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHH-----HHHHHc--CCCCCccccccCCCCChhHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE-----ESLKSV--NLFHGGVADKQAGKYSGGMKRRLSV 776 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~-----~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsi 776 (800)
++.+||+||++.+++. |++||+.++.. ..+.++..+..+ +.+..+ |+. ...++...+||||||||++|
T Consensus 408 ~~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~--t~~~~~~~~LSgGq~qrl~l 482 (585)
T TIGR01192 408 RKSIATVFQDAGLFNR-SIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYD--TLVGERGNRLSGGERQRLAI 482 (585)
T ss_pred HhheEEEccCCccCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhcccccc--chhcCCCCCCCHHHHHHHHH
Confidence 8899999999999974 99999987531 122233322221 122222 232 24556778899999999999
Q ss_pred HHHHcCCCcEEEEc
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 A~ALig~P~vlLLD 790 (800)
||||+.+|++++||
T Consensus 483 ARall~~p~ililD 496 (585)
T TIGR01192 483 ARAILKNAPILVLD 496 (585)
T ss_pred HHHHhcCCCEEEEE
Confidence 99999999999999
No 307
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.93 E-value=1.2e-25 Score=262.82 Aligned_cols=148 Identities=27% Similarity=0.347 Sum_probs=126.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
..+++++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|++++ +
T Consensus 320 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~-------- 384 (552)
T TIGR03719 320 DKVIEAENLSKGFGD------KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T-------- 384 (552)
T ss_pred CeEEEEeeEEEEECC------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c--------
Confidence 357999999999963 4699999999999999999999999999999999999999999999843 2
Q ss_pred hcceEEecCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~-~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
..|||+||+. .+++.+|++|++.+.....+.... +..++++++.+++.+ ...++++++|||||||||+||+||+.
T Consensus 385 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~-~~~~~~~~~LSgGe~qrv~la~al~~ 460 (552)
T TIGR03719 385 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKG-SDQQKKVGQLSGGERNRVHLAKTLKS 460 (552)
T ss_pred -eEEEEEeCCccccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCCh-hHhcCchhhCCHHHHHHHHHHHHHhh
Confidence 1599999986 588899999999876433333221 234567899999952 35799999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 461 ~p~lllLD 468 (552)
T TIGR03719 461 GGNVLLLD 468 (552)
T ss_pred CCCEEEEe
Confidence 99999999
No 308
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.93 E-value=9.7e-26 Score=264.41 Aligned_cols=154 Identities=19% Similarity=0.353 Sum_probs=127.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.|+++++++.|++. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. +.+..|
T Consensus 313 ~I~~~~v~~~y~~~----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~ 388 (569)
T PRK10789 313 ELDVNIRQFTYPQT----DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWR 388 (569)
T ss_pred cEEEEEEEEECCCC----CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHH
Confidence 58999999999742 2469999999999999999999999999999999999999999999999999865 456778
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRLs 775 (800)
+.+||+||++.+++. |++||+.+... ..+ ++++++.++..++.+ +...++...+||||||||++
T Consensus 389 ~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~ 461 (569)
T PRK10789 389 SRLAVVSQTPFLFSD-TVANNIALGRP--DAT----QQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRIS 461 (569)
T ss_pred hheEEEccCCeeccc-cHHHHHhcCCC--CCC----HHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 899999999999986 99999986421 112 334555555555431 01334556789999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
+||||+.+|++++||
T Consensus 462 lARall~~~~illlD 476 (569)
T PRK10789 462 IARALLLNAEILILD 476 (569)
T ss_pred HHHHHhcCCCEEEEE
Confidence 999999999999999
No 309
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.2e-26 Score=255.89 Aligned_cols=152 Identities=28% Similarity=0.430 Sum_probs=129.1
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~ 705 (800)
+..+||++.|++. +++++|+||++++||.++|+|+||||||||+++|.|+.+|++|+|.+||.+.++ +.+.+|+
T Consensus 321 i~~~~l~~~y~~g-----~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k 395 (559)
T COG4988 321 ISLENLSFRYPDG-----KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395 (559)
T ss_pred eeecceEEecCCC-----CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHh
Confidence 4455999999852 379999999999999999999999999999999999999999999999999976 5677899
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC----ccccccCC----CCChhHHHHHHHH
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG----GVADKQAG----KYSGGMKRRLSVA 777 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~----~~~d~~~~----~LSGG~KrRLsiA 777 (800)
+++|++|++.+++. |++||+.++.. +..++++.+.+++.++.+. +=.|..++ .|||||+|||++|
T Consensus 396 ~i~~v~Q~p~lf~g-TireNi~l~~~------~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLA 468 (559)
T COG4988 396 QISWVSQNPYLFAG-TIRENILLARP------DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALA 468 (559)
T ss_pred HeeeeCCCCccccc-cHHHHhhccCC------cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHH
Confidence 99999999999998 99999998632 2335667777777777531 11233344 4999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
|||+.+++++|+|
T Consensus 469 RAll~~~~l~llD 481 (559)
T COG4988 469 RALLSPASLLLLD 481 (559)
T ss_pred HHhcCCCCEEEec
Confidence 9999999999999
No 310
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=7.4e-26 Score=237.12 Aligned_cols=129 Identities=29% Similarity=0.459 Sum_probs=114.1
Q ss_pred CcEEEEeEEEEcCCCCC-CC--cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHH
Q 003716 625 HAIISDNLRKIYPGRDG-NP--EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD 701 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~-~~--~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~ 701 (800)
..++++||+|.|+.+.+ .. ...||+||||+|++||++||+|+|||||||+-|+|+|+++||+|+|+++|+++....
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~- 81 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS- 81 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence 46899999999975431 11 248999999999999999999999999999999999999999999999999874311
Q ss_pred HhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 702 ~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
+.+..+++.++|+.+|+.. +++++.++++||||+||+.|||||+
T Consensus 82 -----------------------------------~~~~~~~v~elL~~Vgl~~-~~~~ryPhelSGGQrQRi~IARALa 125 (268)
T COG4608 82 -----------------------------------KEERRERVLELLEKVGLPE-EFLYRYPHELSGGQRQRIGIARALA 125 (268)
T ss_pred -----------------------------------hhHHHHHHHHHHHHhCCCH-HHhhcCCcccCchhhhhHHHHHHHh
Confidence 3455678999999999975 6999999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+++++|
T Consensus 126 l~P~liV~D 134 (268)
T COG4608 126 LNPKLIVAD 134 (268)
T ss_pred hCCcEEEec
Confidence 999999999
No 311
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.93 E-value=6.6e-26 Score=288.23 Aligned_cols=156 Identities=21% Similarity=0.322 Sum_probs=129.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC--------------------
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-------------------- 684 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-------------------- 684 (800)
..|+++||++.|+++. ++++|+|+||+|++||++||+|++||||||++++|.|+++|
T Consensus 1164 g~I~f~nVsF~Y~~~~---~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRP---NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred ceEEEEEEEEECCCCC---CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccc
Confidence 3599999999998532 35799999999999999999999999999999999999998
Q ss_pred ----------------------------------CcceEEECCeecCc-cHHHhhcceEEecCCCCCCCCCCHHHHHHHH
Q 003716 685 ----------------------------------TSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFY 729 (800)
Q Consensus 685 ----------------------------------tsG~I~i~G~~i~~-~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~ 729 (800)
++|+|+++|.|+++ +.+.+|++||||||++.||+. |++|||.+.
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g 1319 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFG 1319 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcC
Confidence 69999999999976 567889999999999999974 999999975
Q ss_pred hhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 730 GRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 730 ~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.. .. .+++++++++..++.+ +.........||||||||++|||||+.+|+|||||
T Consensus 1320 ~~--~a----t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1320 KE--DA----TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred CC--CC----CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 21 12 2345666666655532 01223345679999999999999999999999999
No 312
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.93 E-value=8.2e-26 Score=270.78 Aligned_cols=155 Identities=25% Similarity=0.460 Sum_probs=128.0
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|++. ++.+++|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|+++.. +.+..
T Consensus 454 ~~i~~~~vsf~y~~~----~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 454 GAITFENIRFRYAPD----SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred CeEEEEEEEEEcCCC----CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHH
Confidence 469999999999742 2469999999999999999999999999999999999999999999999999975 56778
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|+.||||||++.+++. |++||+.+... ..+ ++++.++++..++.+ +...++...+||||||||+
T Consensus 530 r~~i~~v~q~~~lf~~-ti~eNi~~~~~--~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 530 RRQMGVVLQENVLFSR-SIRDNIALCNP--GAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred HHhCeEEccCCeehhh-hHHHHHhcCCC--CCC----HHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 9999999999999986 99999986421 122 233444444444321 1234556778999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
++||||+.+|++++||
T Consensus 603 ~lARall~~~~ililD 618 (694)
T TIGR01846 603 AIARALVGNPRILIFD 618 (694)
T ss_pred HHHHHHHhCCCEEEEE
Confidence 9999999999999999
No 313
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.9e-26 Score=225.00 Aligned_cols=153 Identities=27% Similarity=0.411 Sum_probs=137.9
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++.+||+-..+ +...+.++||++.+||.+-|.||||||||||+|||+|+.+|++|+|+++|..+...++..++.
T Consensus 3 L~a~~L~~~R~------e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~ 76 (209)
T COG4133 3 LEAENLSCERG------ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQA 76 (209)
T ss_pred chhhhhhhccC------cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHH
Confidence 45566666554 357999999999999999999999999999999999999999999999999998888777888
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+-|.--.+.+=..||+.|||.||.++.+- .....+.++++.+||. ++.|.++++||-|||||+++||-.+..+++
T Consensus 77 l~yLGH~~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~--g~~dlp~~~LSAGQqRRvAlArL~ls~~pL 151 (209)
T COG4133 77 LLYLGHQPGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLA--GLEDLPVGQLSAGQQRRVALARLWLSPAPL 151 (209)
T ss_pred HHHhhccccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcc--cccccchhhcchhHHHHHHHHHHHcCCCCc
Confidence 88888899999999999999999998764 2245788999999997 599999999999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
+|||
T Consensus 152 WiLD 155 (209)
T COG4133 152 WILD 155 (209)
T ss_pred eeec
Confidence 9999
No 314
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=7.8e-26 Score=227.94 Aligned_cols=164 Identities=26% Similarity=0.328 Sum_probs=134.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh-
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY- 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r- 704 (800)
++.++|++|.|..... .++.|++++|++|++||.+.++|.|||||||++++|+|.++||+|+|.|+|.|+.+.....|
T Consensus 1 Mi~~~~~~~~f~~g~~-~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA 79 (263)
T COG1101 1 MISLSNATKTFFKGTP-LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79 (263)
T ss_pred CcccccceeeecCCCh-hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHh
Confidence 3567888898865322 36789999999999999999999999999999999999999999999999999976443333
Q ss_pred cceEEecCCC--CCCCCCCHHHHHHHHhh---hcCCCc---hhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHH
Q 003716 705 TSMGVCPQED--LLWETLTGREHLLFYGR---LKNLKG---PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 776 (800)
Q Consensus 705 ~~IGycpQ~~--~L~~~LTv~E~L~~~~~---lkg~~~---~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsi 776 (800)
..++-++|++ ...+.||+.||+.+... -+|+.. ...++.-.+.++.+++.-+...+.+++-|||||||-||+
T Consensus 80 ~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred hHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 4588899997 47999999999998542 233332 334445566677776653468899999999999999999
Q ss_pred HHHHcCCCcEEEEc
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 A~ALig~P~vlLLD 790 (800)
++|.++.|+|+|||
T Consensus 160 ~MAtl~~pkiLLLD 173 (263)
T COG1101 160 LMATLHPPKILLLD 173 (263)
T ss_pred HHHhcCCCcEEEec
Confidence 99999999999999
No 315
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.93 E-value=2e-25 Score=260.67 Aligned_cols=147 Identities=21% Similarity=0.315 Sum_probs=126.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r 704 (800)
.++++|+++.|++ ++.+++|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|+++.+ +.+.+|
T Consensus 322 ~i~~~~v~f~y~~-----~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 396 (547)
T PRK10522 322 TLELRNVTFAYQD-----NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYR 396 (547)
T ss_pred eEEEEEEEEEeCC-----CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHh
Confidence 5999999999974 2469999999999999999999999999999999999999999999999999975 556788
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCcccc---c--cCCCCChhHHHHHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD---K--QAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d---~--~~~~LSGG~KrRLsiA~A 779 (800)
++++|+||++.+++. |++|| + ....++.+++.++.+++.+ ..+ . ...+||||||||++||||
T Consensus 397 ~~i~~v~q~~~lf~~-ti~~n--------~--~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~G~~LSgGq~qRl~lARa 463 (547)
T PRK10522 397 KLFSAVFTDFHLFDQ-LLGPE--------G--KPANPALVEKWLERLKMAH--KLELEDGRISNLKLSKGQKKRLALLLA 463 (547)
T ss_pred hheEEEecChhHHHH-hhccc--------c--CchHHHHHHHHHHHcCCch--hhhccccCCCCCCCCHHHHHHHHHHHH
Confidence 999999999999886 77776 1 1233556788899998863 222 1 145899999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
++.+|++++||
T Consensus 464 l~~~~~ililD 474 (547)
T PRK10522 464 LAEERDILLLD 474 (547)
T ss_pred HhcCCCEEEEE
Confidence 99999999999
No 316
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.93 E-value=2.7e-25 Score=257.53 Aligned_cols=155 Identities=19% Similarity=0.304 Sum_probs=128.0
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-H-H
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-D 701 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~-~ 701 (800)
..+++++|+++ .+++++||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|+++... . .
T Consensus 266 ~~~l~~~~l~~-----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 266 APVLTVEDLTG-----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ 334 (510)
T ss_pred CceEEEeCCCC-----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHH
Confidence 34789999983 159999999999999999999999999999999999999999999999988542 2 2
Q ss_pred HhhcceEEecCCC---CCCCCCCHHHHHHHHh--hhc-CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHH
Q 003716 702 RIYTSMGVCPQED---LLWETLTGREHLLFYG--RLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 702 ~~r~~IGycpQ~~---~L~~~LTv~E~L~~~~--~lk-g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLs 775 (800)
..++.+||+||+. .+++.+|+.|++.... ... .......++.++++++.++|.. +..++++++|||||||||+
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF-NHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC-CCccCccccCCcHHHHHHH
Confidence 2456799999984 5888999999986431 111 1112334456889999999952 3689999999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||+||+.+|+|||||
T Consensus 414 la~al~~~p~lLlLD 428 (510)
T PRK15439 414 IAKCLEASPQLLIVD 428 (510)
T ss_pred HHHHHhhCCCEEEEC
Confidence 999999999999999
No 317
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.93 E-value=2.7e-25 Score=259.91 Aligned_cols=153 Identities=16% Similarity=0.225 Sum_probs=128.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|+++.|+++++. ++.+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.++.. ..++.
T Consensus 336 ~~i~~~~v~f~y~~~~~~-~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGS-EGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred ceEEEEEEEEEeCCCCCC-cCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 469999999999753211 2469999999999999999999999999999999999999999999999999975 45677
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccc------cCCCCChhHHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK------QAGKYSGGMKRRLSVA 777 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~------~~~~LSGG~KrRLsiA 777 (800)
|+.++|++|++.+|+. |++||+. .+..+++++++++.+++.+ ..++ ...+||||||||++||
T Consensus 415 ~~~i~~v~q~~~lf~~-ti~~n~~---------~~~~~~~~~~~~~~~~l~~--~~~~lp~g~~t~~~LSgGq~qRlala 482 (555)
T TIGR01194 415 RDLFSAIFADFHLFDD-LIGPDEG---------EHASLDNAQQYLQRLEIAD--KVKIEDGGFSTTTALSTGQQKRLALI 482 (555)
T ss_pred HhhCcEEccChhhhhh-hhhcccc---------cchhHHHHHHHHHHcCCch--hhcccccccCCcccCCHHHHHHHHHH
Confidence 8899999999999986 7888731 1234567888999999863 3222 2367999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
||++.+|++++||
T Consensus 483 Rall~~~~ililD 495 (555)
T TIGR01194 483 CAWLEDRPILLFD 495 (555)
T ss_pred HHHHcCCCEEEEe
Confidence 9999999999999
No 318
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.92 E-value=3.2e-25 Score=230.28 Aligned_cols=132 Identities=31% Similarity=0.430 Sum_probs=111.5
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCC--CCCHHHHHHHHh
Q 003716 653 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWE--TLTGREHLLFYG 730 (800)
Q Consensus 653 l~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~--~LTv~E~L~~~~ 730 (800)
|++++||++||+|+||||||||+++|+|+++|++|+|.++|+++. +.++.+||+||++.++. .+|++|++.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG----KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch----HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 578999999999999999999999999999999999999998763 24578999999987643 479999998642
Q ss_pred hh----cCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 731 RL----KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 731 ~l----kg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.. .+......+++++++++.+++. +..++++++||||||||++||+||+.+|++++||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~llilD 138 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLT--ELADRPVGELSGGQRQRVLVARALATRPSVLLLD 138 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCc--hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 11 1112223456789999999997 4789999999999999999999999999999999
No 319
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.92 E-value=4.6e-25 Score=261.76 Aligned_cols=148 Identities=22% Similarity=0.247 Sum_probs=126.3
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
..+|+++||+|.|++ +.+++++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ |.++
T Consensus 317 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~------- 382 (635)
T PRK11147 317 KIVFEMENVNYQIDG------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL------- 382 (635)
T ss_pred CceEEEeeeEEEECC------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-------
Confidence 457999999999963 56999999999999999999999999999999999999999999998 5432
Q ss_pred hcceEEecCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 704 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 704 r~~IGycpQ~~-~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
.|||++|+. .+++.+|+.|++.+........ .....+.++++.+++.. +..++++++|||||||||+||+||+.
T Consensus 383 --~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGekqRl~la~al~~ 457 (635)
T PRK11147 383 --EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHP-KRAMTPVKALSGGERNRLLLARLFLK 457 (635)
T ss_pred --EEEEEeCcccccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCH-HHHhChhhhCCHHHHHHHHHHHHHhc
Confidence 599999985 6889999999998643211111 12456788999999953 36799999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|++||||
T Consensus 458 ~p~lLlLD 465 (635)
T PRK11147 458 PSNLLILD 465 (635)
T ss_pred CCCEEEEc
Confidence 99999999
No 320
>PLN03232 ABC transporter C family member; Provisional
Probab=99.92 E-value=2.5e-25 Score=284.72 Aligned_cols=154 Identities=19% Similarity=0.310 Sum_probs=129.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|++++|++. .+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.|||.|+.+ +.+.+
T Consensus 1233 g~I~f~nVsf~Y~~~----~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPG----LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred CcEEEEEEEEEECCC----CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHH
Confidence 359999999999531 2469999999999999999999999999999999999999999999999999976 56788
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|++|+|+||++.+|+. |+||||..+. .. .++++.++++..++.+ +....+...+||||||||+
T Consensus 1309 R~~i~iVpQdp~LF~g-TIr~NL~~~~---~~----sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1380 (1495)
T PLN03232 1309 RRVLSIIPQSPVLFSG-TVRFNIDPFS---EH----NDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLL 1380 (1495)
T ss_pred HhhcEEECCCCeeeCc-cHHHHcCCCC---CC----CHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHH
Confidence 9999999999999987 9999998642 12 2345666666666542 0122344568999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+|++||
T Consensus 1381 aLARALLr~~~ILILD 1396 (1495)
T PLN03232 1381 SLARALLRRSKILVLD 1396 (1495)
T ss_pred HHHHHHHhCCCEEEEE
Confidence 9999999999999999
No 321
>PLN03130 ABC transporter C family member; Provisional
Probab=99.92 E-value=2.9e-25 Score=284.78 Aligned_cols=154 Identities=23% Similarity=0.349 Sum_probs=129.9
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++||+++|++. .+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|+|||.|+++ ..+.+
T Consensus 1236 g~I~f~nVsf~Y~~~----~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPE----LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred CcEEEEEEEEEeCCC----CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHH
Confidence 369999999999641 2469999999999999999999999999999999999999999999999999976 56788
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
|++||++||++.||+. |+||||..+. .. .++++.++++..++.+ +....+...+||||||||+
T Consensus 1312 R~~IsiVpQdp~LF~G-TIreNLd~~~---~~----tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrl 1383 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFSG-TVRFNLDPFN---EH----NDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLL 1383 (1622)
T ss_pred HhccEEECCCCccccc-cHHHHhCcCC---CC----CHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHH
Confidence 9999999999999987 9999998642 11 2445666666666531 0122334568999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+||+||
T Consensus 1384 aLARALLr~p~ILILD 1399 (1622)
T PLN03130 1384 SLARALLRRSKILVLD 1399 (1622)
T ss_pred HHHHHHHcCCCEEEEE
Confidence 9999999999999999
No 322
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.92 E-value=3e-25 Score=229.21 Aligned_cols=128 Identities=23% Similarity=0.367 Sum_probs=107.1
Q ss_pred eeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEE-ECCeecCccHHHhhcceEEecCCCCCCCCCCHHH
Q 003716 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (800)
Q Consensus 646 ~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~-i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E 724 (800)
++++|+||+|++||++||+||||||||||+|+|+|+++|++|+|. ++|..+. +| |.+.+++.+|++|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~---------~~---~~~~l~~~ltv~e 68 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP---------LG---ANSFILPGLTGEE 68 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec---------cc---cccccCCcCcHHH
Confidence 379999999999999999999999999999999999999999997 7775431 22 4566889999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 725 ~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
|+.+....++....+.. +.+.+.++|. +..++++++||||||||+++|+||+.+|+++|||
T Consensus 69 nl~~~~~~~~~~~~~~~---~~~~~~~~l~--~~~~~~~~~lS~G~~qrv~la~al~~~p~llllD 129 (213)
T PRK15177 69 NARMMASLYGLDGDEFS---HFCYQLTQLE--QCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIAD 129 (213)
T ss_pred HHHHHHHHcCCCHHHHH---HHHHHHhChh--HHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 99987776655433322 3344556775 4678999999999999999999999999999999
No 323
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.92 E-value=6.9e-26 Score=248.29 Aligned_cols=158 Identities=23% Similarity=0.415 Sum_probs=126.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~ 702 (800)
...|+++|+++.|.. .|++++||||++++|+.++|+||+||||||++|+|-.+...++|.|.|||+||+. ....
T Consensus 535 ~G~i~fsnvtF~Y~p-----~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~S 609 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDP-----GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSS 609 (790)
T ss_pred CCeEEEEEeEEecCC-----CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHH
Confidence 346999999999964 5789999999999999999999999999999999999999999999999999976 4567
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHH--HH-HcCCCCCccc---cccCCCCChhHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES--LK-SVNLFHGGVA---DKQAGKYSGGMKRRLSV 776 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~--L~-~l~L~~~~~~---d~~~~~LSGG~KrRLsi 776 (800)
.|++||++||+..||++ |+..|+++ ++.. -+.+++.++++.+ =+ .+++.+ ++. .++.-+|||||||||+|
T Consensus 610 LRs~IGVVPQDtvLFNd-TI~yNIry-ak~~-AsneevyaAAkAA~IHdrIl~fPe-gY~t~VGERGLkLSGGEKQRVAi 685 (790)
T KOG0056|consen 610 LRSSIGVVPQDTVLFND-TILYNIRY-AKPS-ASNEEVYAAAKAAQIHDRILQFPE-GYNTRVGERGLKLSGGEKQRVAI 685 (790)
T ss_pred HHHhcCcccCcceeecc-eeeeheee-cCCC-CChHHHHHHHHHhhHHHHHhcCch-hhhhhhhhcccccCCcchhhHHH
Confidence 89999999999999998 99999985 4332 1222222222111 11 133432 221 23445799999999999
Q ss_pred HHHHcCCCcEEEEc
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 A~ALig~P~vlLLD 790 (800)
||+++.+|.+++||
T Consensus 686 ARtiLK~P~iIlLD 699 (790)
T KOG0056|consen 686 ARTILKAPSIILLD 699 (790)
T ss_pred HHHHhcCCcEEEEc
Confidence 99999999999999
No 324
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.92 E-value=3.8e-25 Score=233.47 Aligned_cols=127 Identities=25% Similarity=0.303 Sum_probs=109.3
Q ss_pred eeeeeEEEEc-----CCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCC
Q 003716 647 AVNGLSLALP-----SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLT 721 (800)
Q Consensus 647 al~~lsl~I~-----~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LT 721 (800)
.+++++|+++ +||++||+||||||||||+++|+|+++|++|+|.++|. .|+|+||+......+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-----------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-----------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-----------eEEEecccccCCCCCC
Confidence 5667777775 79999999999999999999999999999999999884 5899999988778899
Q ss_pred HHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 722 GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 722 v~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
++|++.+.....+ . ....++++++.++|. +..++++++|||||||||+||+||+.+|+++|||
T Consensus 78 v~e~l~~~~~~~~--~--~~~~~~~~l~~l~l~--~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllD 140 (246)
T cd03237 78 VRDLLSSITKDFY--T--HPYFKTEIAKPLQIE--QILDREVPELSGGELQRVAIAACLSKDADIYLLD 140 (246)
T ss_pred HHHHHHHHhhhcc--c--cHHHHHHHHHHcCCH--HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999976433221 1 123467889999996 4789999999999999999999999999999999
No 325
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.5e-25 Score=229.10 Aligned_cols=160 Identities=25% Similarity=0.363 Sum_probs=136.3
Q ss_pred CCCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cH-
Q 003716 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM- 700 (800)
Q Consensus 623 ~~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~- 700 (800)
+.+.|+++|++.+|++ |++|++||++|++||-.+|+||||||||||+++++|.++|++|.+.+.|+...+ +.
T Consensus 28 ~~~li~l~~v~v~r~g------k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~ 101 (257)
T COG1119 28 NEPLIELKNVSVRRNG------KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETI 101 (257)
T ss_pred CcceEEecceEEEECC------EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcch
Confidence 3457999999999975 689999999999999999999999999999999999999999999999998853 34
Q ss_pred HHhhcceEEecC--CCCCCCCCCHHHHHH--HHhhhc--C-CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHH
Q 003716 701 DRIYTSMGVCPQ--EDLLWETLTGREHLL--FYGRLK--N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 701 ~~~r~~IGycpQ--~~~L~~~LTv~E~L~--~~~~lk--g-~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR 773 (800)
.++|++||+|.- +..+.+..+++|-+. +|+.+- . ...++..+++..+++.+++.+ .+|++.++||-|||||
T Consensus 102 ~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~--la~r~~~~LS~Ge~rr 179 (257)
T COG1119 102 FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH--LADRPFGSLSQGEQRR 179 (257)
T ss_pred HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh--hccCchhhcCHhHHHH
Confidence 789999999964 344555678888664 333321 1 234566778999999999974 8999999999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
+-|||||+.+|+++|||
T Consensus 180 vLiaRALv~~P~LLiLD 196 (257)
T COG1119 180 VLIARALVKDPELLILD 196 (257)
T ss_pred HHHHHHHhcCCCEEEec
Confidence 99999999999999999
No 326
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.92 E-value=8e-25 Score=216.84 Aligned_cols=105 Identities=27% Similarity=0.446 Sum_probs=96.3
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc--HHHhh
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRIY 704 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~--~~~~r 704 (800)
++++|++|.|++ +++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... .+..+
T Consensus 1 l~~~~l~~~~~~------~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~ 74 (163)
T cd03216 1 LELRGITKRFGG------VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARR 74 (163)
T ss_pred CEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHh
Confidence 468999999963 4699999999999999999999999999999999999999999999999998642 23456
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
+.+||+|| ||||||||+++|+||+.+|
T Consensus 75 ~~i~~~~q-----------------------------------------------------LS~G~~qrl~laral~~~p 101 (163)
T cd03216 75 AGIAMVYQ-----------------------------------------------------LSVGERQMVEIARALARNA 101 (163)
T ss_pred cCeEEEEe-----------------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 78999999 9999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
++++||
T Consensus 102 ~illlD 107 (163)
T cd03216 102 RLLILD 107 (163)
T ss_pred CEEEEE
Confidence 999999
No 327
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.92 E-value=4.5e-25 Score=280.71 Aligned_cols=161 Identities=24% Similarity=0.388 Sum_probs=130.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEE-CCeecCc-cHHHh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-QGLDIRT-DMDRI 703 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i-~G~~i~~-~~~~~ 703 (800)
.|+++||++.|+++ +++++++|+||+|++||++||+||||||||||+++|+|+++|++|+|++ +|.++.. +...+
T Consensus 382 ~I~~~nVsf~Y~~~---~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~l 458 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR---KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWW 458 (1466)
T ss_pred cEEEEEEEEEcCCC---CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHH
Confidence 59999999999753 2356999999999999999999999999999999999999999999999 5688854 45667
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhh-cCC-----------------------------------------------
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRL-KNL----------------------------------------------- 735 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~l-kg~----------------------------------------------- 735 (800)
|++|||+||++.||+. |++||+.+.... ++.
T Consensus 459 r~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 537 (1466)
T PTZ00265 459 RSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM 537 (1466)
T ss_pred HHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhc
Confidence 8899999999999985 999999874210 000
Q ss_pred ---CchhHHHHHHHHHHHcCCCCC---------ccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 736 ---KGPALTQAVEESLKSVNLFHG---------GVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 736 ---~~~~~~~~v~~~L~~l~L~~~---------~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.....++++.++++.+++.+. ...++...+||||||||++|||||+.+|+|||||
T Consensus 538 ~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLD 604 (1466)
T PTZ00265 538 RKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILD 604 (1466)
T ss_pred ccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 001123567778888776420 1135678899999999999999999999999999
No 328
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.92 E-value=6.5e-25 Score=261.25 Aligned_cols=148 Identities=22% Similarity=0.370 Sum_probs=123.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..|+++|+++.|++ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +
T Consensus 450 ~~i~~~nv~~~~~~-----~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----------~ 514 (659)
T TIGR00954 450 NGIKFENIPLVTPN-----GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----------K 514 (659)
T ss_pred CeEEEEeeEEECCC-----CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----------C
Confidence 46999999999963 24699999999999999999999999999999999999999999998763 4
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCCCcccccc---------CCCCChhHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFHGGVADKQ---------AGKYSGGMKRRL 774 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~-~~~~~~~v~~~L~~l~L~~~~~~d~~---------~~~LSGG~KrRL 774 (800)
+++||+||++.+++. |++||+.+.....+.. ....+++++++++.+++.+ ..+++ .++||||||||+
T Consensus 515 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~--~~~~~~g~~~~~~~~~~LSgGqkQRl 591 (659)
T TIGR00954 515 GKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTH--ILEREGGWSAVQDWMDVLSGGEKQRI 591 (659)
T ss_pred CcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHH--HHhhcCCcccccccccCCCHHHHHHH
Confidence 679999999999887 9999998643222111 1122456788999999863 44443 379999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|++++||
T Consensus 592 ~iARal~~~p~illLD 607 (659)
T TIGR00954 592 AMARLFYHKPQFAILD 607 (659)
T ss_pred HHHHHHHcCCCEEEEe
Confidence 9999999999999999
No 329
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.4e-25 Score=233.19 Aligned_cols=133 Identities=25% Similarity=0.434 Sum_probs=117.3
Q ss_pred eeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-----HHHhhcceEEecCCCCCCCCCCHHH
Q 003716 650 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDRIYTSMGVCPQEDLLWETLTGRE 724 (800)
Q Consensus 650 ~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-----~~~~r~~IGycpQ~~~L~~~LTv~E 724 (800)
+++|+.+.--+++|-|++||||||++|||+|+++|++|.|.++|.-+... ...-+++|||+||+..||+++||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 68899988789999999999999999999999999999999999876431 2234678999999999999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 725 ~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
||.|. +.+. .....+++.+.+|+.| .+++++.+|||||||||+|+|||+.+|+++|||
T Consensus 96 NL~YG-~~~~-----~~~~fd~iv~lLGI~h--LL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmD 153 (352)
T COG4148 96 NLRYG-MWKS-----MRAQFDQLVALLGIEH--LLDRYPGTLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred chhhh-hccc-----chHhHHHHHHHhCcHH--HHhhCCCccCcchhhHHHHHHHHhcCCCeeeec
Confidence 99964 2221 3456788999999985 899999999999999999999999999999999
No 330
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.92 E-value=7.2e-25 Score=240.31 Aligned_cols=125 Identities=27% Similarity=0.447 Sum_probs=111.8
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH
Q 003716 663 MLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ 742 (800)
Q Consensus 663 LLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~ 742 (800)
|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++.+||+||+..+++.+|++||+.+..+.++.+..+.++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~-~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 68999999999999999999999999999999985422 23578999999999999999999999876655555556677
Q ss_pred HHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 743 AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 743 ~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+++++++.++|. ++.++++.+||||||||++|||||+.+|+++|||
T Consensus 80 ~~~~~l~~~~l~--~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLD 125 (325)
T TIGR01187 80 RVLEALRLVQLE--EFADRKPHQLSGGQQQRVALARALVFKPKILLLD 125 (325)
T ss_pred HHHHHHHHcCCc--chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 899999999997 4789999999999999999999999999999999
No 331
>PTZ00243 ABC transporter; Provisional
Probab=99.92 E-value=1e-24 Score=279.20 Aligned_cols=154 Identities=20% Similarity=0.340 Sum_probs=130.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++||+++|++. ...+|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|+|||.|+.+ ..+++
T Consensus 1307 G~I~f~nVsf~Y~~~----~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREG----LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred CeEEEEEEEEEeCCC----CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHH
Confidence 359999999999642 2459999999999999999999999999999999999999999999999999976 56788
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-----cccc----ccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-----GVAD----KQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~-----~~~d----~~~~~LSGG~KrRL 774 (800)
|++|||+||++.||+. |++|||..+. . ..++++.++++.+++.+. +-.| ....+||||||||+
T Consensus 1383 R~~I~iVpQdp~LF~g-TIreNIdp~~---~----~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrL 1454 (1560)
T PTZ00243 1383 RRQFSMIPQDPVLFDG-TVRQNVDPFL---E----ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLM 1454 (1560)
T ss_pred HhcceEECCCCccccc-cHHHHhCccc---C----CCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHH
Confidence 9999999999999987 9999997532 1 124567888888877520 0123 33457999999999
Q ss_pred HHHHHHcCC-CcEEEEc
Q 003716 775 SVAISLIGN-PKVRLSL 790 (800)
Q Consensus 775 siA~ALig~-P~vlLLD 790 (800)
+|||||+++ |+||+||
T Consensus 1455 aLARALL~~~~~ILlLD 1471 (1560)
T PTZ00243 1455 CMARALLKKGSGFILMD 1471 (1560)
T ss_pred HHHHHHhcCCCCEEEEe
Confidence 999999995 9999999
No 332
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.92 E-value=6.3e-25 Score=233.03 Aligned_cols=147 Identities=20% Similarity=0.294 Sum_probs=122.2
Q ss_pred EeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEE-----------ECCeecCc
Q 003716 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-----------VQGLDIRT 698 (800)
Q Consensus 630 ~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~-----------i~G~~i~~ 698 (800)
.+|+|.|++ .+.+++|+| .+++||+++|+||||||||||+|+|+|+++|++|+|. ++|+++..
T Consensus 4 ~~~~~~y~~-----~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~ 77 (255)
T cd03236 4 DEPVHRYGP-----NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN 77 (255)
T ss_pred cCcceeecC-----cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhh
Confidence 478999964 235999999 4999999999999999999999999999999999996 78888754
Q ss_pred cHHHhh---cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHH
Q 003716 699 DMDRIY---TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 699 ~~~~~r---~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLs 775 (800)
...+.+ ..++|++|+..+++. ++.+++.... .....++.++++++.+++. +..++.+.+||||||||++
T Consensus 78 ~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 78 YFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL-----KKKDERGKLDELVDQLELR--HVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred hhHHhhhcccceeeecchhccCch-HHHHHHHHHh-----chhHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHH
Confidence 322222 247999999888874 7888876532 2233456788999999997 4789999999999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
+|+||+.+|++++||
T Consensus 150 laral~~~p~illlD 164 (255)
T cd03236 150 IAAALARDADFYFFD 164 (255)
T ss_pred HHHHHHhCCCEEEEE
Confidence 999999999999999
No 333
>PRK13409 putative ATPase RIL; Provisional
Probab=99.92 E-value=1.6e-24 Score=254.43 Aligned_cols=140 Identities=23% Similarity=0.233 Sum_probs=123.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+++++|++|.|++ ..++++||+|++||++||+||||||||||+|+|+|+++|++|+|.++
T Consensus 339 ~~l~~~~ls~~~~~-------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~------------ 399 (590)
T PRK13409 339 TLVEYPDLTKKLGD-------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------------ 399 (590)
T ss_pred eEEEEcceEEEECC-------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe------------
Confidence 47999999999963 24999999999999999999999999999999999999999999885
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P 784 (800)
..+||+||+..+.+.+||+|++.+..... . ....++++++.++|. +..++++.+|||||||||+||+||+.+|
T Consensus 400 ~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~--~---~~~~~~~~L~~l~l~--~~~~~~~~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 400 LKISYKPQYIKPDYDGTVEDLLRSITDDL--G---SSYYKSEIIKPLQLE--RLLDKNVKDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred eeEEEecccccCCCCCcHHHHHHHHhhhc--C---hHHHHHHHHHHCCCH--HHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 15999999988889999999998743211 1 123578899999996 4789999999999999999999999999
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
+++|||
T Consensus 473 ~llLLD 478 (590)
T PRK13409 473 DLYLLD 478 (590)
T ss_pred CEEEEe
Confidence 999999
No 334
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.92 E-value=1.5e-24 Score=233.32 Aligned_cols=140 Identities=19% Similarity=0.311 Sum_probs=112.1
Q ss_pred CCCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHH
Q 003716 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 702 (800)
Q Consensus 623 ~~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~ 702 (800)
....|+++|+++. . +.+++++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~~l~i~nls~~-~-------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--------- 98 (282)
T cd03291 36 DDNNLFFSNLCLV-G-------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--------- 98 (282)
T ss_pred CCCeEEEEEEEEe-c-------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---------
Confidence 3457999999985 1 3599999999999999999999999999999999999999999999988
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrR 773 (800)
.+||+||++.+++. |++||+.+..... . ..+.+.++.+++.+ ....++.+.+||||||||
T Consensus 99 ---~i~yv~q~~~l~~~-tv~enl~~~~~~~---~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qr 167 (282)
T cd03291 99 ---RISFSSQFSWIMPG-TIKENIIFGVSYD---E----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRAR 167 (282)
T ss_pred ---EEEEEeCccccccc-CHHHHhhcccccC---H----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHH
Confidence 39999999988875 9999998632211 1 11222333333321 012345678999999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
+++|+||+.+|++++||
T Consensus 168 v~lAraL~~~p~iLiLD 184 (282)
T cd03291 168 ISLARAVYKDADLYLLD 184 (282)
T ss_pred HHHHHHHhcCCCEEEEE
Confidence 99999999999999999
No 335
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=1.9e-24 Score=254.48 Aligned_cols=160 Identities=29% Similarity=0.415 Sum_probs=141.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CcceEEECCeecCccHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT---TSGTAYVQGLDIRTDMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p---tsG~I~i~G~~i~~~~~~ 702 (800)
.+..++++..-+++.+ +.+++|+|||..+++||+.||+||+|||||||+++|+|.... .+|+|.+||+.. +.+.
T Consensus 25 ~~~~~~~~~~~~~~~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~--~~~~ 101 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR--DSRS 101 (613)
T ss_pred eeEEEEEEEEecCCCC-ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC--chhh
Confidence 4667788887765432 358899999999999999999999999999999999999874 799999999653 3456
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCccccccCC-----CCChhHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAG-----KYSGGMKRRL 774 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg---~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~-----~LSGG~KrRL 774 (800)
.++..||+.|+|.+++.|||+|+|.+.+.+|- ++.++.+++|+++++++||. ..+|+.++ .+||||||||
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~--~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE--KCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh--hhccceecCCCCCccccchhhHH
Confidence 78889999999999999999999999998863 35588899999999999997 48888887 4999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||.-|+.||+|++||
T Consensus 180 sia~Ell~~P~iLflD 195 (613)
T KOG0061|consen 180 SIALELLTDPSILFLD 195 (613)
T ss_pred HHHHHHHcCCCEEEec
Confidence 9999999999999999
No 336
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.92 E-value=1.1e-24 Score=279.39 Aligned_cols=154 Identities=18% Similarity=0.282 Sum_probs=130.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|++.+|++. ...+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.|||.|+++ ..+.+
T Consensus 1283 g~I~f~nVsf~Y~~~----~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED----LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred CcEEEEEEEEEeCCC----CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHH
Confidence 469999999999742 2469999999999999999999999999999999999999999999999999976 56788
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC------C---ccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH------G---GVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~------~---~~~d~~~~~LSGG~KrRL 774 (800)
|++|||+||++.||+. |+||||..+. .. .++++.++++..++.+ + ........+||||||||+
T Consensus 1359 R~~i~iVpQdp~LF~g-TIr~NLdp~~---~~----sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1430 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFSG-SLRMNLDPFS---QY----SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLV 1430 (1522)
T ss_pred HhcCeEECCCCcccCc-cHHHHcCccc---CC----CHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHH
Confidence 9999999999999997 9999997543 12 2445666777766642 0 122234457999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+||+||
T Consensus 1431 ~LARALLr~~~ILiLD 1446 (1522)
T TIGR00957 1431 CLARALLRKTKILVLD 1446 (1522)
T ss_pred HHHHHHHcCCCEEEEE
Confidence 9999999999999999
No 337
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=1.2e-24 Score=208.33 Aligned_cols=155 Identities=26% Similarity=0.425 Sum_probs=136.2
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---cceEEECCeecCccHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt---sG~I~i~G~~i~~~~~~ 702 (800)
++.++|++.+-++ .-.|-++|++|.+|||+.|+||+|||||||+.-+.|.+.++ +|+++++++++..-. .
T Consensus 2 ~l~l~nvsl~l~g------~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP-a 74 (213)
T COG4136 2 MLCLKNVSLRLPG------SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP-A 74 (213)
T ss_pred ceeeeeeeecCCC------ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc-h
Confidence 4678899977764 46899999999999999999999999999999999999875 799999999986533 3
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
.++++|+.+|++.||++++|.+||.|. .-..+++...+..++..|++.+|. +..++.+.+||||||-|+++-|+|+.
T Consensus 75 ~qRq~GiLFQD~lLFphlsVg~Nl~fA-lp~~~KG~aRr~~a~aAL~~~gL~--g~f~~dP~tlSGGQrARvaL~R~Lla 151 (213)
T COG4136 75 AQRQIGILFQDALLFPHLSVGQNLLFA-LPATLKGNARRNAANAALERSGLD--GAFHQDPATLSGGQRARVALLRALLA 151 (213)
T ss_pred hhhheeeeecccccccccccccceEEe-cCcccccHHHHhhHHHHHHHhccc--hhhhcChhhcCcchHHHHHHHHHHHh
Confidence 467899999999999999999999873 222344556778899999999997 58899999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
.||.++||
T Consensus 152 ~Pk~lLLD 159 (213)
T COG4136 152 QPKALLLD 159 (213)
T ss_pred CcceeeeC
Confidence 99999999
No 338
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.4e-24 Score=254.29 Aligned_cols=147 Identities=18% Similarity=0.277 Sum_probs=117.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+|.++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..
T Consensus 1 ~i~i~nls~~~g~------~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~---------- 64 (638)
T PRK10636 1 MIVFSSLQIRRGV------RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW---------- 64 (638)
T ss_pred CEEEEEEEEEeCC------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC----------
Confidence 4789999999974 569999999999999999999999999999999999999999999998742
Q ss_pred ceEEecCCCCCCCCCCHHHHHH-----------------------HHhhhc----CCCchhHHHHHHHHHHHcCCCCCcc
Q 003716 706 SMGVCPQEDLLWETLTGREHLL-----------------------FYGRLK----NLKGPALTQAVEESLKSVNLFHGGV 758 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~-----------------------~~~~lk----g~~~~~~~~~v~~~L~~l~L~~~~~ 758 (800)
.+||++|+.... ..|+.+.+. .+..+. .....+.+.+++++++.+|+.+ +.
T Consensus 65 ~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~-~~ 142 (638)
T PRK10636 65 QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN-EQ 142 (638)
T ss_pred EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc-hh
Confidence 377777754332 234444321 111111 1122344567899999999962 36
Q ss_pred ccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 759 ADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 759 ~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.++++++|||||||||+||+||+.+|+|||||
T Consensus 143 ~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLD 174 (638)
T PRK10636 143 LERPVSDFSGGWRMRLNLAQALICRSDLLLLD 174 (638)
T ss_pred hcCchhhcCHHHHHHHHHHHHHccCCCEEEEc
Confidence 79999999999999999999999999999999
No 339
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.91 E-value=1.9e-24 Score=274.44 Aligned_cols=145 Identities=19% Similarity=0.236 Sum_probs=123.0
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC----CCCcceEEECCeecCccHHHhhcceEEecCCCCCCCC
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT----RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWET 719 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~----~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~ 719 (800)
.+.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++.....+.|+.++|++|+|.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 467999999999999999999999999999999999986 5799999999998854333456679999999999999
Q ss_pred CCHHHHHHHHhhhcC-------CCchhHHHH-HHHHHHHcCCCCCcccccc-----CCCCChhHHHHHHHHHHHcCCCcE
Q 003716 720 LTGREHLLFYGRLKN-------LKGPALTQA-VEESLKSVNLFHGGVADKQ-----AGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 720 LTv~E~L~~~~~lkg-------~~~~~~~~~-v~~~L~~l~L~~~~~~d~~-----~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
+||+|+|.|.++++. .++++..++ ++++++.+||.+ .+|++ ++.|||||||||+||+||+.+|+|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH--TRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc--ccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 999999999776552 233333333 567899999974 55554 567999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 231 lllD 234 (1394)
T TIGR00956 231 QCWD 234 (1394)
T ss_pred EEEe
Confidence 9999
No 340
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.91 E-value=5.7e-24 Score=235.98 Aligned_cols=160 Identities=28% Similarity=0.486 Sum_probs=125.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~ 702 (800)
...+.++++...=++. ++++|+++||++.+||.+||+||+|||||||.|+|.|..+|++|.|.+||-+++. +.++
T Consensus 332 ~g~L~Ve~l~~~PPg~----~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~ 407 (580)
T COG4618 332 QGALSVERLTAAPPGQ----KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQ 407 (580)
T ss_pred CceeeEeeeeecCCCC----CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHH
Confidence 4568999999876542 4789999999999999999999999999999999999999999999999999975 7788
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHcCCCCCccccccCCCCChhHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~-----~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA 777 (800)
.-++|||.||+-.||+. |+.||+.=|.. ..+.+.+-+ .+.+++-.+--..+.....--..||||||||+.+|
T Consensus 408 lG~hiGYLPQdVeLF~G-TIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLA 484 (580)
T COG4618 408 LGRHIGYLPQDVELFDG-TIAENIARFGE--EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALA 484 (580)
T ss_pred hccccCcCcccceecCC-cHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHH
Confidence 88999999999999998 99999964431 111111111 13333333222100112223347999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
|||.|+|.+++||
T Consensus 485 RAlYG~P~lvVLD 497 (580)
T COG4618 485 RALYGDPFLVVLD 497 (580)
T ss_pred HHHcCCCcEEEec
Confidence 9999999999999
No 341
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.3e-24 Score=253.39 Aligned_cols=144 Identities=24% Similarity=0.365 Sum_probs=122.7
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
..+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 310 ~~~l~~~~l~~~y~~------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------- 374 (638)
T PRK10636 310 NPLLKMEKVSAGYGD------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--------- 374 (638)
T ss_pred CceEEEEeeEEEeCC------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC---------
Confidence 457999999999963 56999999999999999999999999999999999999999999999641
Q ss_pred hcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 704 YTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 704 r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
..+||++|+. .+.+..|+.+++.-. ......+.++++|+.+++.. +..++++++|||||||||+||+||+
T Consensus 375 -~~igy~~Q~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~L~~~~l~~-~~~~~~~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 375 -IKLGYFAQHQLEFLRADESPLQHLARL------APQELEQKLRDYLGGFGFQG-DKVTEETRRFSGGEKARLVLALIVW 446 (638)
T ss_pred -EEEEEecCcchhhCCccchHHHHHHHh------CchhhHHHHHHHHHHcCCCh-hHhcCchhhCCHHHHHHHHHHHHHh
Confidence 2599999974 455667888776421 11233567889999999962 3679999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|+|+|||
T Consensus 447 ~~p~lLlLD 455 (638)
T PRK10636 447 QRPNLLLLD 455 (638)
T ss_pred cCCCEEEEc
Confidence 999999999
No 342
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.91 E-value=6.1e-24 Score=229.91 Aligned_cols=165 Identities=27% Similarity=0.382 Sum_probs=146.5
Q ss_pred CCcEEEEeEEEEcCCCCCC-----CcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGN-----PEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~-----~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~ 698 (800)
...++.++++..|+-+.|- ....||+++||++++||.+||+|.+|||||||=.+|.++++++ |+|.++|+++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 3568899999999865431 2357999999999999999999999999999999999999887 999999999963
Q ss_pred ----cHHHhhcceEEecCCC--CCCCCCCHHHHHHHHhhhcC--CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhH
Q 003716 699 ----DMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (800)
Q Consensus 699 ----~~~~~r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg--~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~ 770 (800)
++..+|++|-+|||++ .|-|.|||.|-+.-....++ .+..+.++++.++|+++||+. .-++++++++||||
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp-~~r~RYPhEFSGGQ 431 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP-ATRNRYPHEFSGGQ 431 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCCh-hHhhcCCcccCcch
Confidence 5566789999999997 58999999999887666653 567888999999999999986 68899999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEc
Q 003716 771 KRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 771 KrRLsiA~ALig~P~vlLLD 790 (800)
|||++||||++.+|++++||
T Consensus 432 RQRIAIARAliLkP~~i~LD 451 (534)
T COG4172 432 RQRIAIARALILKPELILLD 451 (534)
T ss_pred hhHHHHHHHHhcCCcEEEec
Confidence 99999999999999999999
No 343
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.1e-25 Score=244.17 Aligned_cols=154 Identities=25% Similarity=0.395 Sum_probs=133.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHHhh
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIY 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~~r 704 (800)
.++++||+++|++. +.+|++|+||++++||.++|+|++||||||+++.|+|..+|++|+|.++|.++..- ..++|
T Consensus 336 ~l~~~~vsF~y~~~----~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~ 411 (573)
T COG4987 336 ALELRNVSFTYPGQ----QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALR 411 (573)
T ss_pred eeeeccceeecCCC----ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHH
Confidence 78999999999863 35799999999999999999999999999999999999999999999999999763 34578
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---C------ccccccCCCCChhHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---G------GVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---~------~~~d~~~~~LSGG~KrRLs 775 (800)
+.|++++|...+|.. |+|+||.+.. ....++++.++++++||++ + ...+.-...|||||||||+
T Consensus 412 e~i~vl~Qr~hlF~~-Tlr~NL~lA~------~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA 484 (573)
T COG4987 412 ETISVLTQRVHLFSG-TLRDNLRLAN------PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484 (573)
T ss_pred HHHhhhccchHHHHH-HHHHHHhhcC------CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence 899999999999997 9999998742 2244677888899988864 0 1334455689999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
|||+|+.|.++++||
T Consensus 485 lAR~LL~dapl~lLD 499 (573)
T COG4987 485 LARALLHDAPLWLLD 499 (573)
T ss_pred HHHHHHcCCCeEEec
Confidence 999999999999999
No 344
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=1.3e-22 Score=245.08 Aligned_cols=160 Identities=24% Similarity=0.334 Sum_probs=137.1
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCC--CCcceEEECCeecCccHHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQGLDIRTDMDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~--ptsG~I~i~G~~i~~~~~~ 702 (800)
+....+|+.+.-+.+. ..+..|+||+=-++||-.+||+|+|||||||||++|+|-.. ..+|+|+|+|....+ +.
T Consensus 786 ~V~~w~dl~~~~~~qG--~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q--~t 861 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQG--GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ--ET 861 (1391)
T ss_pred ceEEEEeCCccccccc--cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch--hh
Confidence 3455667766654332 35789999999999999999999999999999999999754 358999999998753 45
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCccccccCCC----CChhHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGK----YSGGMKRRLS 775 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg---~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~----LSGG~KrRLs 775 (800)
.+|.+|||-|+|.-.+.+||||-|.|.|.+|. ++.++..+.|+++++.++|. +++|.-++. ||.+||+||+
T Consensus 862 F~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~--~~~daiVG~~G~GLs~eQRKrLT 939 (1391)
T KOG0065|consen 862 FARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK--EYADALVGLPGSGLSTEQRKRLT 939 (1391)
T ss_pred hccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch--hhhhhhccCCCCCCCHHHhceee
Confidence 67889999999999999999999999998873 44455567899999999997 488888887 9999999999
Q ss_pred HHHHHcCCC-cEEEEc
Q 003716 776 VAISLIGNP-KVRLSL 790 (800)
Q Consensus 776 iA~ALig~P-~vlLLD 790 (800)
||.-|+.+| .||+||
T Consensus 940 IgVELvA~P~~ilFLD 955 (1391)
T KOG0065|consen 940 IGVELVANPSSILFLD 955 (1391)
T ss_pred EEEEEecCCceeEEec
Confidence 999999999 999999
No 345
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.90 E-value=7.2e-24 Score=271.12 Aligned_cols=153 Identities=22% Similarity=0.332 Sum_probs=129.4
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++||+++|++. .+.+|+|+||+|++||.+||+|++|||||||+++|.|+++ ++|+|+|||.|+.+ ..+.+
T Consensus 1216 g~I~f~nVs~~Y~~~----~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEA----GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred CeEEEEEEEEEeCCC----CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHH
Confidence 469999999999742 3579999999999999999999999999999999999997 89999999999976 56778
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-----ccccc----cCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-----GVADK----QAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~-----~~~d~----~~~~LSGG~KrRL 774 (800)
|++|+|+||++.+|+. |+||||..+.. ..++++.++++.++|.+. +-.|. ....||||||||+
T Consensus 1291 R~~is~IpQdp~LF~G-TIR~NLdp~~~-------~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL 1362 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFSG-TFRKNLDPYEQ-------WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLM 1362 (1490)
T ss_pred HhceEEEeCCCccCcc-CHHHHhCcccC-------CCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHH
Confidence 9999999999999997 99999975421 125577788888877420 01222 2347999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||||+.+|+||+||
T Consensus 1363 ~LARALLr~~~ILlLD 1378 (1490)
T TIGR01271 1363 CLARSILSKAKILLLD 1378 (1490)
T ss_pred HHHHHHhCCCCEEEEe
Confidence 9999999999999999
No 346
>PLN03073 ABC transporter F family; Provisional
Probab=99.90 E-value=2.9e-23 Score=248.14 Aligned_cols=144 Identities=25% Similarity=0.350 Sum_probs=120.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+++++||++.|++ .+.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|++++ +
T Consensus 507 ~~L~~~~ls~~y~~-----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~----------~ 571 (718)
T PLN03073 507 PIISFSDASFGYPG-----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA----------K 571 (718)
T ss_pred ceEEEEeeEEEeCC-----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC----------c
Confidence 57999999999963 24699999999999999999999999999999999999999999999865 2
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHH-hh-hcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFY-GR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~-~~-lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
..|||++|+. .+.+++.++..++ .. ..+. .++.++++|+.+++.+ +..++++.+|||||||||+||+||+.
T Consensus 572 ~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~~----~~~~i~~~L~~~gl~~-~~~~~~~~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 572 VRMAVFSQHH--VDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred eeEEEEeccc--cccCCcchhHHHHHHHhcCCC----CHHHHHHHHHHCCCCh-HHhcCCccccCHHHHHHHHHHHHHhc
Confidence 4699999985 3455666664432 22 1121 2456889999999963 36789999999999999999999999
Q ss_pred CCcEEEEc
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~vlLLD 790 (800)
+|+++|||
T Consensus 645 ~p~lLLLD 652 (718)
T PLN03073 645 KPHILLLD 652 (718)
T ss_pred CCCEEEEc
Confidence 99999999
No 347
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=7.1e-24 Score=206.68 Aligned_cols=165 Identities=18% Similarity=0.243 Sum_probs=140.8
Q ss_pred CcEEEEeEEEEcCCC-CCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeec----Cc-
Q 003716 625 HAIISDNLRKIYPGR-DGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI----RT- 698 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~-~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i----~~- 698 (800)
..+.++|++|+|--. .+.-.-++++++||+|+.|||++|-||+|+||||++|+|-|-+.|++|+|++.-..- ..
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 368899999998421 112346799999999999999999999999999999999999999999999975432 11
Q ss_pred c---HHHh-hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHH
Q 003716 699 D---MDRI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 699 ~---~~~~-r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRL 774 (800)
+ .-++ |+-|||+.|+-...|.....|-+.--..-+|++.+....++.++|.++++.+ ...+-.+.++|||+|||+
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlpe-rLW~LaPaTFSGGEqQRV 161 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPE-RLWSLAPATFSGGEQQRV 161 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCH-HHhcCCCcccCCchheeh
Confidence 1 1223 4569999999988898888888777667789999999999999999999985 688999999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
.|||.++.|-+|+|||
T Consensus 162 NIaRgfivd~pILLLD 177 (235)
T COG4778 162 NIARGFIVDYPILLLD 177 (235)
T ss_pred hhhhhhhccCceEEec
Confidence 9999999999999999
No 348
>PRK13409 putative ATPase RIL; Provisional
Probab=99.90 E-value=8.2e-24 Score=248.41 Aligned_cols=144 Identities=22% Similarity=0.307 Sum_probs=118.7
Q ss_pred EeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEE-----------ECCeecCc
Q 003716 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-----------VQGLDIRT 698 (800)
Q Consensus 630 ~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~-----------i~G~~i~~ 698 (800)
++++++|++ +..+|++++ .+++||++||+||||||||||+|+|+|+++|++|+|. ++|+++..
T Consensus 77 ~~~~~~yg~-----~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 77 EEPVHRYGV-----NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred cCceEEecC-----CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHH
Confidence 348999964 346999999 9999999999999999999999999999999999997 89998854
Q ss_pred cHHHh---hcceEEecCCCCCCCCC---CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHH
Q 003716 699 DMDRI---YTSMGVCPQEDLLWETL---TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 772 (800)
Q Consensus 699 ~~~~~---r~~IGycpQ~~~L~~~L---Tv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~Kr 772 (800)
...+. +..+++.+|.....+.+ |++|++... +..+.++++++.++|. ...|+++++|||||||
T Consensus 151 ~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~--~~~~~~~~~LSgGe~q 219 (590)
T PRK13409 151 YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLE--NILDRDISELSGGELQ 219 (590)
T ss_pred HHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHH
Confidence 32222 23467777754443332 999988631 2345789999999996 4789999999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
||+||+||+.+|+++|||
T Consensus 220 rv~ia~al~~~p~lllLD 237 (590)
T PRK13409 220 RVAIAAALLRDADFYFFD 237 (590)
T ss_pred HHHHHHHHhcCCCEEEEE
Confidence 999999999999999999
No 349
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.90 E-value=5.5e-23 Score=244.09 Aligned_cols=145 Identities=21% Similarity=0.202 Sum_probs=113.8
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
+|.++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..
T Consensus 3 ~l~i~~ls~~~~~------~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~---------- 66 (635)
T PRK11147 3 LISIHGAWLSFSD------APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL---------- 66 (635)
T ss_pred EEEEeeEEEEeCC------ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC----------
Confidence 6899999999964 469999999999999999999999999999999999999999999998731
Q ss_pred ceEEecCCCCCCCCCCHHHH------------------------------HHHHhhh----cCCCchhHHHHHHHHHHHc
Q 003716 706 SMGVCPQEDLLWETLTGREH------------------------------LLFYGRL----KNLKGPALTQAVEESLKSV 751 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~------------------------------L~~~~~l----kg~~~~~~~~~v~~~L~~l 751 (800)
.+++++|++......++.++ +..+..+ ......+.+.+++++++.+
T Consensus 67 ~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 146 (635)
T PRK11147 67 IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL 146 (635)
T ss_pred EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC
Confidence 25666665432222333332 2222211 1111223456789999999
Q ss_pred CCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 752 NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 752 ~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
|+. .++++++|||||||||+||+||+.+|+|+|||
T Consensus 147 gl~----~~~~~~~LSgGekqRv~LAraL~~~P~lLLLD 181 (635)
T PRK11147 147 GLD----PDAALSSLSGGWLRKAALGRALVSNPDVLLLD 181 (635)
T ss_pred CCC----CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 995 38899999999999999999999999999999
No 350
>PLN03140 ABC transporter G family member; Provisional
Probab=99.89 E-value=1.3e-23 Score=266.70 Aligned_cols=145 Identities=21% Similarity=0.237 Sum_probs=122.7
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---cceEEECCeecCccHHHhhcceEEecCCCCCCCCC
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 720 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt---sG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~L 720 (800)
++.+|+|+|+.|++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++.... .++.+||++|+|.+++.+
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV--PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc--ccceeEEecccccCCCcC
Confidence 467999999999999999999999999999999999999998 999999999885321 267899999999999999
Q ss_pred CHHHHHHHHhhhcCCC----------chhH------------------------HHHHHHHHHHcCCCCC---ccccccC
Q 003716 721 TGREHLLFYGRLKNLK----------GPAL------------------------TQAVEESLKSVNLFHG---GVADKQA 763 (800)
Q Consensus 721 Tv~E~L~~~~~lkg~~----------~~~~------------------------~~~v~~~L~~l~L~~~---~~~d~~~ 763 (800)
||+|+|.|.++.++.. .++. +..++++++.+||.+. ...|+.+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 9999999987766421 1110 1135779999999741 1236678
Q ss_pred CCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 764 GKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 764 ~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+.|||||||||+||++|+++|++++||
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllD 361 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMD 361 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEe
Confidence 899999999999999999999999999
No 351
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.89 E-value=3.7e-23 Score=201.05 Aligned_cols=95 Identities=35% Similarity=0.552 Sum_probs=89.4
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcc
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~ 706 (800)
++++|+++.|++ ..+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|. +.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----------~~ 64 (144)
T cd03221 1 IELENLSKTYGG------KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----------VK 64 (144)
T ss_pred CEEEEEEEEECC------ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----------EE
Confidence 468999999964 36999999999999999999999999999999999999999999999984 46
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcE
Q 003716 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (800)
Q Consensus 707 IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~v 786 (800)
++|+|| ||+|||||+++||||+.+|++
T Consensus 65 i~~~~~-----------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 65 IGYFEQ-----------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEEEcc-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 999999 999999999999999999999
Q ss_pred EEEc
Q 003716 787 RLSL 790 (800)
Q Consensus 787 lLLD 790 (800)
++||
T Consensus 92 lllD 95 (144)
T cd03221 92 LLLD 95 (144)
T ss_pred EEEe
Confidence 9999
No 352
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=9.7e-23 Score=207.92 Aligned_cols=160 Identities=22% Similarity=0.324 Sum_probs=139.7
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCcceEEECCeecCc--cH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRT--DM 700 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~--~ptsG~I~i~G~~i~~--~~ 700 (800)
.+++++||+..-.+ ++.+|+++||+|++||+.+|+||||||||||.++|+|.. ++|+|+|.++|+||.. ..
T Consensus 2 ~~L~I~dLhv~v~~-----~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ 76 (251)
T COG0396 2 MMLEIKDLHVEVEG-----KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPD 76 (251)
T ss_pred ceeEEeeeEEEecC-----chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHh
Confidence 46899999999864 157999999999999999999999999999999999985 7899999999999975 34
Q ss_pred HHhhcceEEecCCCCCCCCCCHHHHHHHHhhhc-CCC--chhHHHHHHHHHHHcCCCCCccccccCC-CCChhHHHHHHH
Q 003716 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLK--GPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRRLSV 776 (800)
Q Consensus 701 ~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk-g~~--~~~~~~~v~~~L~~l~L~~~~~~d~~~~-~LSGG~KrRLsi 776 (800)
+++|..|..-+|.|.=++..|+.+.|......+ +-. ..+..+.+++.++.+++.+ +++++.+. .+|||+|+|..|
T Consensus 77 ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~-~~l~R~vN~GFSGGEkKR~Ei 155 (251)
T COG0396 77 ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDE-EFLERYVNEGFSGGEKKRNEI 155 (251)
T ss_pred HHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCH-HHhhcccCCCcCcchHHHHHH
Confidence 567888999999999999999999998755432 211 2466788999999999985 68888887 599999999999
Q ss_pred HHHHcCCCcEEEEc
Q 003716 777 AISLIGNPKVRLSL 790 (800)
Q Consensus 777 A~ALig~P~vlLLD 790 (800)
+.+++.+|++.+||
T Consensus 156 lQ~~~lePkl~ILD 169 (251)
T COG0396 156 LQLLLLEPKLAILD 169 (251)
T ss_pred HHHHhcCCCEEEec
Confidence 99999999999999
No 353
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.89 E-value=8.3e-23 Score=235.46 Aligned_cols=147 Identities=29% Similarity=0.378 Sum_probs=124.8
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
.+|.++++++.|++ +.+++++|+++.+|+++||+|+||||||||||+|+|.+.|++|+|...+.
T Consensus 2 ~~i~~~~ls~~~g~------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~---------- 65 (530)
T COG0488 2 SMITLENLSLAYGD------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG---------- 65 (530)
T ss_pred ceEEEeeeEEeeCC------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----------
Confidence 46899999999964 68999999999999999999999999999999999999999999987642
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHh-hhc-----------------------------CCCchhHHHHHHHHHHHcCCC
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYG-RLK-----------------------------NLKGPALTQAVEESLKSVNLF 754 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~-~lk-----------------------------g~~~~~~~~~v~~~L~~l~L~ 754 (800)
-++||++|+..+.+..||.+.+.... .+. .+...+.+.+++.+|..+|+.
T Consensus 66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 25999999999999999998765421 000 011123456788899999997
Q ss_pred CCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 755 HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 755 ~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+ . ++++++||||||+||++|+||+.+|++||||
T Consensus 146 ~--~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLD 178 (530)
T COG0488 146 D--E-DRPVSSLSGGWRRRVALARALLEEPDLLLLD 178 (530)
T ss_pred c--c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4 3 9999999999999999999999999999999
No 354
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.88 E-value=3.2e-22 Score=216.65 Aligned_cols=165 Identities=22% Similarity=0.320 Sum_probs=141.5
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CcceEEECCeecCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-----tsG~I~i~G~~i~~ 698 (800)
.+.+.++||+..|+..+ ....||++|||+|++||.++|+|++|||||-+.+.+.|+++- -+|+|.++|.|+-.
T Consensus 4 ~~lL~v~nLsV~f~~~~--~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 4 MPLLSIRNLSVAFHQEG--GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred CcceeeeccEEEEecCC--cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 35789999999997543 357899999999999999999999999999999999999875 37999999999853
Q ss_pred ----cHHHhh-cceEEecCCCC--CCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCC-CccccccCCCCChh
Q 003716 699 ----DMDRIY-TSMGVCPQEDL--LWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFH-GGVADKQAGKYSGG 769 (800)
Q Consensus 699 ----~~~~~r-~~IGycpQ~~~--L~~~LTv~E~L~~~~~-lkg~~~~~~~~~v~~~L~~l~L~~-~~~~d~~~~~LSGG 769 (800)
.+..+| .+|+++||++. |.|-.|+...+.-..+ -+|+.+++.++++.++|+.+|+.+ +...+.++++||||
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGG 161 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGG 161 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcc
Confidence 233444 46999999974 7888888887765444 468888999999999999999975 34668999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEc
Q 003716 770 MKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 770 ~KrRLsiA~ALig~P~vlLLD 790 (800)
||||+.||+||+.+|++++-|
T Consensus 162 qRQRVMIAMALan~P~lLIAD 182 (534)
T COG4172 162 QRQRVMIAMALANEPDLLIAD 182 (534)
T ss_pred hhhHHHHHHHHcCCCCeEeec
Confidence 999999999999999999999
No 355
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=2e-22 Score=202.69 Aligned_cols=93 Identities=28% Similarity=0.338 Sum_probs=85.2
Q ss_pred EeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEE
Q 003716 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV 709 (800)
Q Consensus 630 ~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGy 709 (800)
.||+|.|++ +.+++++ |++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ++|
T Consensus 4 ~~l~~~~~~------~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----------i~~ 65 (177)
T cd03222 4 PDCVKRYGV------FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----------PVY 65 (177)
T ss_pred CCeEEEECC------EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----------EEE
Confidence 589999964 5688885 9999999999999999999999999999999999999999853 789
Q ss_pred ecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEE
Q 003716 710 CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLS 789 (800)
Q Consensus 710 cpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLL 789 (800)
+||+.. ||||||||+++||||+.+|++++|
T Consensus 66 ~~q~~~--------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 66 KPQYID--------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred EcccCC--------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 988542 999999999999999999999999
Q ss_pred c
Q 003716 790 L 790 (800)
Q Consensus 790 D 790 (800)
|
T Consensus 96 D 96 (177)
T cd03222 96 D 96 (177)
T ss_pred E
Confidence 9
No 356
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.8e-22 Score=195.10 Aligned_cols=103 Identities=35% Similarity=0.649 Sum_probs=95.1
Q ss_pred EEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhcce
Q 003716 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSM 707 (800)
Q Consensus 629 i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~~I 707 (800)
++++++.|++ +.++++++|++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. ...+.++.+
T Consensus 2 ~~~~~~~~~~------~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i 75 (157)
T cd00267 2 IENLSFRYGG------RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRI 75 (157)
T ss_pred eEEEEEEeCC------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhce
Confidence 5789999964 469999999999999999999999999999999999999999999999998864 244566789
Q ss_pred EEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEE
Q 003716 708 GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVR 787 (800)
Q Consensus 708 GycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vl 787 (800)
+|+|| ||||||||+++|+|++.+|+++
T Consensus 76 ~~~~q-----------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 76 GYVPQ-----------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred EEEee-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 99999 9999999999999999999999
Q ss_pred EEc
Q 003716 788 LSL 790 (800)
Q Consensus 788 LLD 790 (800)
+||
T Consensus 103 ilD 105 (157)
T cd00267 103 LLD 105 (157)
T ss_pred EEe
Confidence 999
No 357
>PLN03232 ABC transporter C family member; Provisional
Probab=99.87 E-value=5.9e-22 Score=253.92 Aligned_cols=144 Identities=24% Similarity=0.352 Sum_probs=117.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..++++|+++.|++++ ++++|+|+||+|++||.++|+||+|||||||+++|.|+++|++|.+. .++
T Consensus 613 ~~I~~~~vsF~y~~~~---~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-----------~~~ 678 (1495)
T PLN03232 613 PAISIKNGYFSWDSKT---SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-----------VIR 678 (1495)
T ss_pred CcEEEEeeEEEcCCCC---CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----------Eec
Confidence 3699999999997421 35699999999999999999999999999999999999999998763 246
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRLs 775 (800)
++|+||||++.+++. |++||+.|... .. +++.+++++..+|.+ +.....+..+||||||||++
T Consensus 679 ~~Iayv~Q~p~Lf~g-TIreNI~fg~~---~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 750 (1495)
T PLN03232 679 GSVAYVPQVSWIFNA-TVRENILFGSD---FE----SERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVS 750 (1495)
T ss_pred CcEEEEcCccccccc-cHHHHhhcCCc---cC----HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHH
Confidence 789999999999986 99999998532 12 345555666555532 01223445679999999999
Q ss_pred HHHHHcCCCcEEEEc
Q 003716 776 VAISLIGNPKVRLSL 790 (800)
Q Consensus 776 iA~ALig~P~vlLLD 790 (800)
||||+..+|+|+|||
T Consensus 751 LARAly~~~~IlLLD 765 (1495)
T PLN03232 751 MARAVYSNSDIYIFD 765 (1495)
T ss_pred HHHHHhcCCCEEEEc
Confidence 999999999999999
No 358
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.87 E-value=8.7e-22 Score=252.71 Aligned_cols=146 Identities=23% Similarity=0.374 Sum_probs=116.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
..++++|+++.|++. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 635 ~~i~~~~~~~~~~~~----~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------- 699 (1522)
T TIGR00957 635 NSITVHNATFTWARD----LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----------- 699 (1522)
T ss_pred CcEEEEEeEEEcCCC----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-----------
Confidence 369999999999742 24699999999999999999999999999999999999999999999987
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHH--HHHHHcCCCC---CccccccCCCCChhHHHHHHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE--ESLKSVNLFH---GGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~--~~L~~l~L~~---~~~~d~~~~~LSGG~KrRLsiA~A 779 (800)
+||||||++.+++ .|++||+.+.... ..+..++.++ ++.+.++..+ +...+++..+||||||||++||||
T Consensus 700 -~i~yv~Q~~~l~~-~Ti~eNI~~g~~~---~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARA 774 (1522)
T TIGR00957 700 -SVAYVPQQAWIQN-DSLRENILFGKAL---NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 774 (1522)
T ss_pred -EEEEEcCCccccC-CcHHHHhhcCCcc---CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence 4999999999875 6999999974321 2222222111 1122233221 123467788999999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
++.+|++++||
T Consensus 775 l~~~~~illLD 785 (1522)
T TIGR00957 775 VYSNADIYLFD 785 (1522)
T ss_pred HhcCCCEEEEc
Confidence 99999999999
No 359
>PLN03130 ABC transporter C family member; Provisional
Probab=99.86 E-value=7.6e-22 Score=253.54 Aligned_cols=143 Identities=24% Similarity=0.368 Sum_probs=118.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-ceEEECCeecCccHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS-GTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts-G~I~i~G~~i~~~~~~~ 703 (800)
..|+++|+++.|+.++ ++.+|+|+||+|++||.++|+||+|||||||+++|.|+++|++ |+|.+
T Consensus 613 ~~I~~~nvsf~y~~~~---~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l------------ 677 (1622)
T PLN03130 613 PAISIKNGYFSWDSKA---ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------------ 677 (1622)
T ss_pred CceEEEeeEEEccCCC---CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE------------
Confidence 3699999999997421 3569999999999999999999999999999999999999999 89974
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrRL 774 (800)
+++|+||||++.+++. |++||+.|.... .+++.+++++..+|.+ ......+..+||||||||+
T Consensus 678 ~~~Iayv~Q~p~Lfng-TIreNI~fg~~~-------d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRI 749 (1622)
T PLN03130 678 RGTVAYVPQVSWIFNA-TVRDNILFGSPF-------DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRV 749 (1622)
T ss_pred cCeEEEEcCccccCCC-CHHHHHhCCCcc-------cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHH
Confidence 4579999999999986 999999985321 2445566666655532 0122345567999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+||||+..+|+|+|||
T Consensus 750 aLARAly~~~~IlLLD 765 (1622)
T PLN03130 750 SMARAVYSNSDVYIFD 765 (1622)
T ss_pred HHHHHHhCCCCEEEEC
Confidence 9999999999999999
No 360
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.86 E-value=1.5e-21 Score=250.00 Aligned_cols=130 Identities=20% Similarity=0.323 Sum_probs=104.3
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHH
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E 724 (800)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||||++.+++. |++|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g------------~iayv~Q~~~l~~~-Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------RISFSPQTSWIMPG-TIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC------------EEEEEeCCCccCCc-cHHH
Confidence 4689999999999999999999999999999999999999999999988 39999999999985 9999
Q ss_pred HHHHHhhhcCCCchhHHHH-----HHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 725 HLLFYGRLKNLKGPALTQA-----VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 725 ~L~~~~~lkg~~~~~~~~~-----v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
|+.|.... .....++. .++.++.+...+....+++..+||||||||++||||++.+|+++|||
T Consensus 506 NI~~g~~~---~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLD 573 (1490)
T TIGR01271 506 NIIFGLSY---DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLD 573 (1490)
T ss_pred HHHhcccc---chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99975322 11111111 22233333222111345678899999999999999999999999999
No 361
>PLN03073 ABC transporter F family; Provisional
Probab=99.85 E-value=7.4e-22 Score=236.18 Aligned_cols=160 Identities=20% Similarity=0.250 Sum_probs=117.2
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC---CCCcceEEECCeecCc--
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT---RTTSGTAYVQGLDIRT-- 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~---~ptsG~I~i~G~~i~~-- 698 (800)
...|.++|++|.|++ +.+|+|+||+|.+||++||+|+||||||||+|+|+|.. .|++|+|.+.++++..
T Consensus 175 ~~~I~i~nls~~y~~------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~ 248 (718)
T PLN03073 175 IKDIHMENFSISVGG------RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDD 248 (718)
T ss_pred ceeEEEceEEEEeCC------CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCC
Confidence 346999999999964 45999999999999999999999999999999999964 6889999865554211
Q ss_pred --c--------H---HHhhcceEEecCCCCCCCC-C---------------CHHHHHH-HHhhhcCCCchhHHHHHHHHH
Q 003716 699 --D--------M---DRIYTSMGVCPQEDLLWET-L---------------TGREHLL-FYGRLKNLKGPALTQAVEESL 748 (800)
Q Consensus 699 --~--------~---~~~r~~IGycpQ~~~L~~~-L---------------Tv~E~L~-~~~~lkg~~~~~~~~~v~~~L 748 (800)
. . ...++.+|+++|.+.+... . ...+.+. .+.++........+++++++|
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L 328 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASIL 328 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 0 0 1123457888876433211 0 0111111 111221122335567788899
Q ss_pred HHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 749 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 749 ~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+.+|+.+ +..++++++|||||||||+||+||+.+|+++|||
T Consensus 329 ~~lgl~~-~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLD 369 (718)
T PLN03073 329 AGLSFTP-EMQVKATKTFSGGWRMRIALARALFIEPDLLLLD 369 (718)
T ss_pred HHCCCCh-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999963 3678999999999999999999999999999999
No 362
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.5e-21 Score=191.07 Aligned_cols=156 Identities=24% Similarity=0.363 Sum_probs=123.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCee-----cCc
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-----IRT 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~-----i~~ 698 (800)
.+.+.+++|+|.|+++ ...+++||++++||+.||+|++|+|||||+++|+|-+.|+.|+|...-.+ +-.
T Consensus 4 ~PLL~V~~lsk~Yg~~------~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 4 KPLLSVSGLSKLYGPG------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred CcceeehhhhhhhCCC------cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhh
Confidence 3578999999999863 46899999999999999999999999999999999999999999886432 211
Q ss_pred --cHH---HhhcceEEecCCCC--CCCCC----CHHHHHHHH-hhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCC
Q 003716 699 --DMD---RIYTSMGVCPQEDL--LWETL----TGREHLLFY-GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 766 (800)
Q Consensus 699 --~~~---~~r~~IGycpQ~~~--L~~~L----Tv~E~L~~~-~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~L 766 (800)
+.+ -.|..-|++.|++. |-... .+-|-+.-. .+-+ -.+++.+.++|+++++.. ...|..+.++
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHY----G~iR~~a~~WL~~VEI~~-~RiDD~PrtF 152 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY----GNIRAEAQDWLEEVEIDL-DRIDDLPRTF 152 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhh----hhHHHHHHHHHHhcccCc-ccccCccccc
Confidence 111 13456899999964 33322 233443322 2222 356778899999999985 5789999999
Q ss_pred ChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 767 SGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 767 SGG~KrRLsiA~ALig~P~vlLLD 790 (800)
||||+|||.|||-|+..|+++|+|
T Consensus 153 SGGMqQRLQiARnLVt~PrLvfMD 176 (258)
T COG4107 153 SGGMQQRLQIARNLVTRPRLVFMD 176 (258)
T ss_pred chHHHHHHHHHHHhccCCceEEec
Confidence 999999999999999999999999
No 363
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.84 E-value=6.4e-21 Score=191.68 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=89.9
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHH
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 723 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~ 723 (800)
.+.|++|+||++++||+++|+||||||||||+|++. +++|++.++|..-. ..++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~----~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPK----FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccc----cccccEEEEhH-----------
Confidence 467999999999999999999999999999999995 37999999876321 11345888877
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC--CcEEEEc
Q 003716 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN--PKVRLSL 790 (800)
Q Consensus 724 E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~--P~vlLLD 790 (800)
.+.++.++|.+ ...++++.+||||||||+++|+||+.+ |+++|||
T Consensus 68 ---------------------~~~l~~~~L~~-~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlD 114 (176)
T cd03238 68 ---------------------LQFLIDVGLGY-LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILD 114 (176)
T ss_pred ---------------------HHHHHHcCCCc-cccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 24678888863 247899999999999999999999999 9999999
No 364
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.8e-21 Score=209.63 Aligned_cols=154 Identities=25% Similarity=0.454 Sum_probs=123.6
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..+..+++++.|.. .+++++++||+++.|+.++++|++|+||||++++|-.++.+++|.|.++|+|++. ..+.+
T Consensus 261 g~v~F~~V~F~y~~-----~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~sl 335 (497)
T COG5265 261 GAVAFINVSFAYDP-----RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSL 335 (497)
T ss_pred ceEEEEEEEeeccc-----cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHH
Confidence 45889999999974 5789999999999999999999999999999999999999999999999999976 34567
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC-----CccccccCC----CCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH-----GGVADKQAG----KYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~-----~~~~d~~~~----~LSGG~KrRL 774 (800)
|+.||.+||+..||.+ |...|+.+. +.. .. ++++...++...+.+ .+-.|..++ .|||||||||
T Consensus 336 R~aIg~VPQDtvLFND-ti~yni~yg-r~~-at----~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrv 408 (497)
T COG5265 336 RRAIGIVPQDTVLFND-TIAYNIKYG-RPD-AT----AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRV 408 (497)
T ss_pred HHHhCcCcccceehhh-hHHHHHhcc-Ccc-cc----HHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHH
Confidence 8999999999999987 888888753 221 11 223333333332221 012233443 6999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
+|||+++.+|+|++||
T Consensus 409 aiar~ilk~p~il~~d 424 (497)
T COG5265 409 AIARTILKNPPILILD 424 (497)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 9999999999999999
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.84 E-value=1.8e-20 Score=216.24 Aligned_cols=146 Identities=28% Similarity=0.314 Sum_probs=126.5
Q ss_pred CCCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHH
Q 003716 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 702 (800)
Q Consensus 623 ~~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~ 702 (800)
.+..++++|++|.|++ .+.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|+|.+.-.
T Consensus 318 g~~vl~~~~~~~~y~~-----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-------- 384 (530)
T COG0488 318 GKLVLEFENVSKGYDG-----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-------- 384 (530)
T ss_pred CCeeEEEeccccccCC-----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc--------
Confidence 3567899999999975 267999999999999999999999999999999999999999999987531
Q ss_pred hhcceEEecCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 703 IYTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 703 ~r~~IGycpQ~~-~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
-++||.+|+. .+.++.|+.|++.-... ...+..+..+|..+++.. +...++++.||||||.||.+|+.++
T Consensus 385 --v~igyf~Q~~~~l~~~~t~~d~l~~~~~------~~~e~~~r~~L~~f~F~~-~~~~~~v~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 385 --VKIGYFDQHRDELDPDKTVLEELSEGFP------DGDEQEVRAYLGRFGFTG-EDQEKPVGVLSGGEKARLLLAKLLL 455 (530)
T ss_pred --eEEEEEEehhhhcCccCcHHHHHHhhCc------cccHHHHHHHHHHcCCCh-HHHhCchhhcCHhHHHHHHHHHHhc
Confidence 3599999986 45577899998875431 111678999999999985 5779999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|.+||||
T Consensus 456 ~~pNvLiLD 464 (530)
T COG0488 456 QPPNLLLLD 464 (530)
T ss_pred cCCCEEEEc
Confidence 999999999
No 366
>PTZ00243 ABC transporter; Provisional
Probab=99.83 E-value=1.2e-20 Score=242.24 Aligned_cols=129 Identities=26% Similarity=0.423 Sum_probs=105.9
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHH
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 723 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~ 723 (800)
++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+. ++||||||++.+++ .|++
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------------~~i~yv~Q~~~l~~-~Tv~ 738 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RSIAYVPQQAWIMN-ATVR 738 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------------CeEEEEeCCCccCC-CcHH
Confidence 3569999999999999999999999999999999999999999999863 46999999999875 6999
Q ss_pred HHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 724 EHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 724 E~L~~~~~lkg~~~~~~~~-----~v~~~L~~l--~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
||+.++... ..+..++ .+++.++.+ |+. ...+++..+||||||||++|||||+.+|+|+|||
T Consensus 739 enI~~~~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~--t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLD 807 (1560)
T PTZ00243 739 GNILFFDEE---DAARLADAVRVSQLEADLAQLGGGLE--TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLD 807 (1560)
T ss_pred HHHHcCChh---hHHHHHHHHHHhhhHHHHHHhhccch--HHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999985321 1111111 233445555 553 3567889999999999999999999999999999
No 367
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=1.2e-20 Score=232.91 Aligned_cols=154 Identities=23% Similarity=0.397 Sum_probs=130.0
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~ 703 (800)
..|+++|++.+|... -..+|+||||+|++||.+||+|..|||||||+++|-.+..|++|+|.|||.||.+ ...+.
T Consensus 1137 G~I~f~~~~~RYrp~----lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPN----LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred CeEEEEEeEEEeCCC----CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHH
Confidence 469999999999752 3479999999999999999999999999999999999999999999999999976 67889
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC-----Ccccc----ccCCCCChhHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH-----GGVAD----KQAGKYSGGMKRRL 774 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~-----~~~~d----~~~~~LSGG~KrRL 774 (800)
|++++++||+|.||.. |+|+||.=+... .++++-++||..+|.+ ...+| +-..++|-||||-+
T Consensus 1213 RsrlsIIPQdPvLFsG-TvR~NLDPf~e~-------sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLl 1284 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFSG-TVRFNLDPFDEY-------SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLL 1284 (1381)
T ss_pred HhcCeeeCCCCceecC-ccccccCccccc-------CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHH
Confidence 9999999999999998 999999754332 2445556666665542 01122 23457999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
++||||+.++||++||
T Consensus 1285 CLARALLr~skILvLD 1300 (1381)
T KOG0054|consen 1285 CLARALLRKSKILVLD 1300 (1381)
T ss_pred HHHHHHhccCCEEEEe
Confidence 9999999999999999
No 368
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.80 E-value=2.5e-19 Score=221.51 Aligned_cols=145 Identities=22% Similarity=0.338 Sum_probs=121.0
Q ss_pred CCCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHH
Q 003716 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 702 (800)
Q Consensus 623 ~~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~ 702 (800)
.+..++++|.+...... .....|+||||+|++||.+|++|+-|||||+|+.+|.|.++..+|++.++|.
T Consensus 515 ~~~~i~i~~~sfsW~~~---~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------- 583 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSE---SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------- 583 (1381)
T ss_pred CCceEEEeeeeEecCCC---CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--------
Confidence 34579999999998752 2345999999999999999999999999999999999999999999999884
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CccccccCCCCChhHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~---------~~~~d~~~~~LSGG~KrR 773 (800)
++||||.+.++.. |+|||+.|...+ .+++-++.++...|.+ .....++.-+||||||||
T Consensus 584 ----iaYv~Q~pWI~ng-TvreNILFG~~~-------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqR 651 (1381)
T KOG0054|consen 584 ----VAYVPQQPWIQNG-TVRENILFGSPY-------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQR 651 (1381)
T ss_pred ----EEEeccccHhhCC-cHHHhhhcCccc-------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHH
Confidence 8999999999987 999999985433 2445555566555542 112345667899999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
+++|||+-.|++|+|||
T Consensus 652 IsLARAVY~~adIYLLD 668 (1381)
T KOG0054|consen 652 ISLARAVYQDADIYLLD 668 (1381)
T ss_pred HHHHHHHhccCCEEEEc
Confidence 99999999999999999
No 369
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.76 E-value=1e-18 Score=189.09 Aligned_cols=150 Identities=23% Similarity=0.369 Sum_probs=123.5
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~ 702 (800)
-..|+++|+++.|.. +.--|..||++|++||++-|+|.|||||||+++.|+|+++|++|+|++||+++.. ..++
T Consensus 320 ~~~lelrnvrfay~~-----~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~led 394 (546)
T COG4615 320 WKTLELRNVRFAYQD-----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLED 394 (546)
T ss_pred ccceeeeeeeeccCc-----ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHH
Confidence 346999999999975 2246899999999999999999999999999999999999999999999999975 5678
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-cccccc--CCCCChhHHHHHHHHHH
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADKQ--AGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~-~~~d~~--~~~LSGG~KrRLsiA~A 779 (800)
.|+-++-++-+-.||+.+ .|.+.....+.++..|+++.|.+. ...|.. .-+||.|||+||++-.|
T Consensus 395 YR~LfSavFsDyhLF~~l------------l~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~A 462 (546)
T COG4615 395 YRKLFSAVFSDYHLFDQL------------LGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLA 462 (546)
T ss_pred HHHHHHHHhhhHhhhHhh------------hCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHH
Confidence 888888777777666653 233333456788888888888641 233333 34799999999999999
Q ss_pred HcCCCcEEEEc
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~vlLLD 790 (800)
++-+.+|+++|
T Consensus 463 llEeR~Ilv~D 473 (546)
T COG4615 463 LLEERDILVLD 473 (546)
T ss_pred HHhhCCeEEee
Confidence 99999999999
No 370
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.75 E-value=9.5e-19 Score=183.46 Aligned_cols=138 Identities=16% Similarity=0.198 Sum_probs=97.5
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHh----------------CCCCCCcc--------eEEECCeec----
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI----------------GITRTTSG--------TAYVQGLDI---- 696 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~Lt----------------Gl~~ptsG--------~I~i~G~~i---- 696 (800)
+.++++++ |++++|+||||||||||+++|. +++.+++| ++.+++.+-
T Consensus 15 ~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~ 89 (243)
T cd03272 15 QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPI 89 (243)
T ss_pred CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCC
Confidence 46788876 8999999999999999999998 55666666 666655321
Q ss_pred CccHHHhhcceEEecCCCCCCC-CCCHHHHHHHHhhhcCCCchhHHH--HHHHHHHHcCCCCCccccccCCCCChhHHHH
Q 003716 697 RTDMDRIYTSMGVCPQEDLLWE-TLTGREHLLFYGRLKNLKGPALTQ--AVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (800)
Q Consensus 697 ~~~~~~~r~~IGycpQ~~~L~~-~LTv~E~L~~~~~lkg~~~~~~~~--~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR 773 (800)
..+...+++.+|++||+..+++ ..|..|...+.... |+....... ...+..+.+++. +..++++.+||||||||
T Consensus 90 ~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~~~~~~~~~~qg~i~~l~~l~--~~~~~~~~~lS~G~~~r 166 (243)
T cd03272 90 DKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFSRSNPYYIVPQGKINSLTNMK--QDEQQEMQQLSGGQKSL 166 (243)
T ss_pred CCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCCCCCCcEEEEcCchHHhhhcc--ccccccccccCHHHHHH
Confidence 1122345678999999988887 46777766665543 544321000 011233334454 35788999999999999
Q ss_pred HHHHHHHc----CCCcEEEEc
Q 003716 774 LSVAISLI----GNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALi----g~P~vlLLD 790 (800)
+++|+||+ .+|++++||
T Consensus 167 ~~la~~l~~~~~~~~~illlD 187 (243)
T cd03272 167 VALALIFAIQKCDPAPFYLFD 187 (243)
T ss_pred HHHHHHHHHhccCCCCEEEEE
Confidence 99999996 368999999
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.74 E-value=1.5e-18 Score=177.60 Aligned_cols=116 Identities=18% Similarity=0.265 Sum_probs=92.7
Q ss_pred eeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---------ceEEECCeecCccHHHhhcceEEecCCCCCCCC
Q 003716 649 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---------GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWET 719 (800)
Q Consensus 649 ~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts---------G~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~ 719 (800)
+++++++++| +++|+||||||||||+++|.|+.++.. |++.+.|+++... ..++++|++||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~vfq~~~~~-- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP--ANFAEVTLTFDNSDGR-- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC--CceEEEEEEEEcCCCc--
Confidence 6789999999 999999999999999999999987653 4677778776432 2357899999998766
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc----CCCcEEEEc
Q 003716 720 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI----GNPKVRLSL 790 (800)
Q Consensus 720 LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi----g~P~vlLLD 790 (800)
+. .. ..++++++++. . +..++++.+||||||||+++|++++ .+|++++||
T Consensus 89 ---------~~----~~---~~~~~~~~l~~---~--~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlD 142 (197)
T cd03278 89 ---------YS----II---SQGDVSEIIEA---P--GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLD 142 (197)
T ss_pred ---------ee----EE---ehhhHHHHHhC---C--CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEe
Confidence 11 10 13466677776 2 3678999999999999999999987 567999999
No 372
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.74 E-value=9.1e-18 Score=175.14 Aligned_cols=138 Identities=16% Similarity=0.144 Sum_probs=89.1
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHH-HHHhCCCCCCcceEEEC-C------ee---cC-ccHHHhh-cceEEe
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFI-SMMIGITRTTSGTAYVQ-G------LD---IR-TDMDRIY-TSMGVC 710 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLl-k~LtGl~~ptsG~I~i~-G------~~---i~-~~~~~~r-~~IGyc 710 (800)
...+|+++||+|++||++||+|+||||||||+ ..+.+ +|++.+. + .. +. .+..+.+ ...++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 46799999999999999999999999999995 55432 3432211 0 00 10 0111111 234455
Q ss_pred cCCCC--CCCCCCHH---HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC-
Q 003716 711 PQEDL--LWETLTGR---EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP- 784 (800)
Q Consensus 711 pQ~~~--L~~~LTv~---E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P- 784 (800)
.|++. +.+..++. |...++..+. ......++ .+.++.++|.+ ...++++.+||||||||+++|+||+.+|
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~-~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~laral~~~p~ 157 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLF--ARVGIRER-LGFLVDVGLGY-LTLSRSAPTLSGGEAQRIRLATQIGSGLT 157 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHh--hhhhHHHH-HHHHHHCCCCc-ccccCccCcCCHHHHHHHHHHHHHHhCCC
Confidence 55543 23344543 3333332221 12222333 56899999963 3579999999999999999999999998
Q ss_pred -cEEEEc
Q 003716 785 -KVRLSL 790 (800)
Q Consensus 785 -~vlLLD 790 (800)
++++||
T Consensus 158 ~~llllD 164 (226)
T cd03270 158 GVLYVLD 164 (226)
T ss_pred CCEEEEe
Confidence 599999
No 373
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.73 E-value=1.5e-19 Score=186.83 Aligned_cols=137 Identities=16% Similarity=0.219 Sum_probs=105.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh-
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY- 704 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r- 704 (800)
.|+++|.. .|++ +.+++++++ +++||+|||||||||++++|. ++.|.+.. ..+
T Consensus 5 ~l~l~nfk-~~~~------~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~----~~~~ 58 (212)
T cd03274 5 KLVLENFK-SYAG------EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS----KMRQ 58 (212)
T ss_pred EEEEECcc-cCCC------CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH----Hhhh
Confidence 46777776 7753 568999987 899999999999999999997 34554432 223
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhc--------CCCchhHHH--HHHHHHHHcCCCCCccccccCCCCChhHHHHH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLK--------NLKGPALTQ--AVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lk--------g~~~~~~~~--~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRL 774 (800)
+++|+++|+..+++.+|++|++.+++... |+..++... ..+++++.++|. +..++++..||+|||||+
T Consensus 59 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~--~~~~~~~~~lS~G~~~r~ 136 (212)
T cd03274 59 KKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMP--KKSWKNISNLSGGEKTLS 136 (212)
T ss_pred hhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccc--cccccchhhcCHHHHHHH
Confidence 57999999999999999999988877543 332221111 125666778886 467889999999999999
Q ss_pred HHHHHHcC----CCcEEEEc
Q 003716 775 SVAISLIG----NPKVRLSL 790 (800)
Q Consensus 775 siA~ALig----~P~vlLLD 790 (800)
++|+|++. +|++++||
T Consensus 137 ~la~al~~~~~~~p~ililD 156 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMD 156 (212)
T ss_pred HHHHHHHhcccCCCCEEEEc
Confidence 99999963 58999999
No 374
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.73 E-value=2.9e-17 Score=186.19 Aligned_cols=155 Identities=21% Similarity=0.333 Sum_probs=132.5
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecC--ccHHH
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--TDMDR 702 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~--~~~~~ 702 (800)
..+++++++.. ..++|+||++++|||+||-|-=|||+|-+++.|.|..++++|+|.++|+++. +..+.
T Consensus 262 ~~l~v~~l~~~----------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~A 331 (500)
T COG1129 262 PVLEVRNLSGG----------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDA 331 (500)
T ss_pred cEEEEecCCCC----------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHH
Confidence 45677777542 1589999999999999999999999999999999999999999999999875 34566
Q ss_pred hhcceEEecCC---CCCCCCCCHHHHHHHHh--hhc---CCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHH
Q 003716 703 IYTSMGVCPQE---DLLWETLTGREHLLFYG--RLK---NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 703 ~r~~IGycpQ~---~~L~~~LTv~E~L~~~~--~lk---g~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRL 774 (800)
++..|+|||.+ +.++..++++||+.+.. +.. -+.....++.++++.+.+++.. .-.+.++.+||||+|||+
T Consensus 332 i~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~-~s~~~~v~~LSGGNQQKV 410 (500)
T COG1129 332 IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKT-PSPEQPIGTLSGGNQQKV 410 (500)
T ss_pred HHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCccc-CCccchhhcCCchhhhhH
Confidence 78899999987 67999999999998752 111 1455666778899999999974 467899999999999999
Q ss_pred HHHHHHcCCCcEEEEc
Q 003716 775 SVAISLIGNPKVRLSL 790 (800)
Q Consensus 775 siA~ALig~P~vlLLD 790 (800)
.||+.|..+|+|||||
T Consensus 411 vlarwL~~~p~vLilD 426 (500)
T COG1129 411 VLARWLATDPKVLILD 426 (500)
T ss_pred HHHHHHhcCCCEEEEC
Confidence 9999999999999999
No 375
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.67 E-value=1.8e-17 Score=175.30 Aligned_cols=133 Identities=19% Similarity=0.219 Sum_probs=100.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCC-cceEEECCe-ecCcc--H-HHhhcceEEecCCC---------CCCCCCCHH
Q 003716 658 GECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGL-DIRTD--M-DRIYTSMGVCPQED---------LLWETLTGR 723 (800)
Q Consensus 658 GEi~gLLGpNGAGKTTLlk~LtGl~~pt-sG~I~i~G~-~i~~~--~-~~~r~~IGycpQ~~---------~L~~~LTv~ 723 (800)
..+++|+|||||||||++++|.|++.++ .|++...|. ++... . ...+.++++.+|++ .+.+.+||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6699999999999999999999999887 468888776 43211 1 11235799999985 356688888
Q ss_pred HHHHHHhhhcC-C-CchhHHHHHHHHHHHcCCCCC------------------ccccccCCCCChhHHHHHHHHHHHc--
Q 003716 724 EHLLFYGRLKN-L-KGPALTQAVEESLKSVNLFHG------------------GVADKQAGKYSGGMKRRLSVAISLI-- 781 (800)
Q Consensus 724 E~L~~~~~lkg-~-~~~~~~~~v~~~L~~l~L~~~------------------~~~d~~~~~LSGG~KrRLsiA~ALi-- 781 (800)
+++......+. + .+....+++.++|+.+++..+ +..++++.+||||||||+++|+||+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88764322111 1 123345789999999998521 2457889999999999999999997
Q ss_pred --CCCcEEEEc
Q 003716 782 --GNPKVRLSL 790 (800)
Q Consensus 782 --g~P~vlLLD 790 (800)
.+|++++||
T Consensus 185 ~~~~~~illlD 195 (251)
T cd03273 185 LFKPAPMYILD 195 (251)
T ss_pred hccCCCEEEEe
Confidence 688999999
No 376
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.67 E-value=3.2e-16 Score=180.95 Aligned_cols=145 Identities=26% Similarity=0.306 Sum_probs=119.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
.+.|.++||+..-++ .+..|++++|+|++||-+-|.|+||||||||+|+|+|+-|--+|+|..-.
T Consensus 390 ~~~i~~~nl~l~~p~-----~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~---------- 454 (604)
T COG4178 390 DHGITLENLSLRTPD-----GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA---------- 454 (604)
T ss_pred cceeEEeeeeEECCC-----CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC----------
Confidence 478999999999875 24799999999999999999999999999999999999999999886531
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccc------cCCCCChhHHHHHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK------QAGKYSGGMKRRLSVA 777 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~------~~~~LSGG~KrRLsiA 777 (800)
-..+-|+||.+.+... |.||-+.+-.... +-.++++.+.|.++||.+ ..++ =-..||+||||||++|
T Consensus 455 ~~~~lflpQ~PY~p~G-tLre~l~YP~~~~----~~~d~~l~~vL~~vgL~~--L~~rl~~~~~W~~vLS~GEqQRlafA 527 (604)
T COG4178 455 DSALLFLPQRPYLPQG-TLREALCYPNAAP----DFSDAELVAVLHKVGLGD--LAERLDEEDRWDRVLSGGEQQRLAFA 527 (604)
T ss_pred CCceEEecCCCCCCCc-cHHHHHhCCCCCC----CCChHHHHHHHHHcCcHH--HHHHHhccCcHhhhcChhHHHHHHHH
Confidence 1347899999998777 9999887543221 123567888999999963 3322 2346999999999999
Q ss_pred HHHcCCCcEEEEc
Q 003716 778 ISLIGNPKVRLSL 790 (800)
Q Consensus 778 ~ALig~P~vlLLD 790 (800)
|.|+++|++++||
T Consensus 528 RilL~kP~~v~LD 540 (604)
T COG4178 528 RLLLHKPKWVFLD 540 (604)
T ss_pred HHHHcCCCEEEEe
Confidence 9999999999999
No 377
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.66 E-value=9.3e-17 Score=179.97 Aligned_cols=146 Identities=18% Similarity=0.244 Sum_probs=118.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
.+.+.++|+++.|.+ +-.+.++++|.|..++.++++||||||||||+|+++|++.|+.|.|.-.-+
T Consensus 387 ~pvi~~~nv~F~y~~-----~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H--------- 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD-----NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH--------- 452 (614)
T ss_pred CCeEEEeccccCCCC-----cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc---------
Confidence 467899999999975 237899999999999999999999999999999999999999999864432
Q ss_pred hcceEEecCC--CCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 704 YTSMGVCPQE--DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 704 r~~IGycpQ~--~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
-.+++--|| +.+.-+.++.|++.= .. ++....+.+..+|.++||.. +..+.+.++||+|||+||.+|++++
T Consensus 453 -~~~~~y~Qh~~e~ldl~~s~le~~~~--~~---~~~~~~e~~r~ilgrfgLtg-d~q~~p~~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 453 -NKLPRYNQHLAEQLDLDKSSLEFMMP--KF---PDEKELEEMRSILGRFGLTG-DAQVVPMSQLSDGQRRRVLFARLAV 525 (614)
T ss_pred -ccchhhhhhhHhhcCcchhHHHHHHH--hc---cccchHHHHHHHHHHhCCCc-cccccchhhcccccchhHHHHHHHh
Confidence 234555555 344445567666542 11 22334678899999999983 6889999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
..|.+|+||
T Consensus 526 kqP~lLlLD 534 (614)
T KOG0927|consen 526 KQPHLLLLD 534 (614)
T ss_pred cCCcEEEec
Confidence 999999999
No 378
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.66 E-value=2.4e-16 Score=167.83 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=106.0
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHh--------CC--CCCCc-----------ceEEECCeecCcc----
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI--------GI--TRTTS-----------GTAYVQGLDIRTD---- 699 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~Lt--------Gl--~~pts-----------G~I~i~G~~i~~~---- 699 (800)
...|+|++++|+.|+.+++.|++|||||||++.+. +. ..|.. --|.|+..+|...
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998552 11 01211 1467777666321
Q ss_pred -------HHHhhc----------------ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC
Q 003716 700 -------MDRIYT----------------SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG 756 (800)
Q Consensus 700 -------~~~~r~----------------~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~ 756 (800)
.+++|+ .++|..++...+..||+.|++.|+..+++ .+++.++|+.+||.+
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~------~~~~~~~L~~vgL~~- 160 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK------IARKLQTLCDVGLGY- 160 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh------HHHHHHHHHHcCCch-
Confidence 122222 25666677777789999999999877642 245678999999962
Q ss_pred ccccccCCCCChhHHHHHHHHHHHcCC---CcEEEEc
Q 003716 757 GVADKQAGKYSGGMKRRLSVAISLIGN---PKVRLSL 790 (800)
Q Consensus 757 ~~~d~~~~~LSGG~KrRLsiA~ALig~---P~vlLLD 790 (800)
...++++.+||||||||+.+|+||+.+ |++++||
T Consensus 161 l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLD 197 (261)
T cd03271 161 IKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILD 197 (261)
T ss_pred hhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 247999999999999999999999996 7999999
No 379
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.65 E-value=1.6e-15 Score=169.27 Aligned_cols=161 Identities=20% Similarity=0.316 Sum_probs=135.9
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeec-Cc-cH-
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RT-DM- 700 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i-~~-~~- 700 (800)
...+++++|+..=.. ...+|+++||+|.+|||+||.|..|-|.+.|+.+|+|+.+|.+|+|.++|+++ .. ..
T Consensus 255 ~~vL~V~~L~v~~~~-----~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~ 329 (501)
T COG3845 255 EVVLEVEDLSVKDRR-----GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPR 329 (501)
T ss_pred CeEEEEeeeEeecCC-----CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHH
Confidence 457899999986532 25789999999999999999999999999999999999999999999999997 21 33
Q ss_pred HHhhcceEEecCC---CCCCCCCCHHHHHHHHhhh------cC-CCchhHHHHHHHHHHHcCCCCCccccccCCCCChhH
Q 003716 701 DRIYTSMGVCPQE---DLLWETLTGREHLLFYGRL------KN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (800)
Q Consensus 701 ~~~r~~IGycpQ~---~~L~~~LTv~E~L~~~~~l------kg-~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~ 770 (800)
+..+..+||+|.+ ..+..++|+.||+.+...- +| +....+.+.++++++++++.. .-.+.++++||||+
T Consensus 330 ~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~-~~~~~~a~~LSGGN 408 (501)
T COG3845 330 ERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA-PSPDAPARSLSGGN 408 (501)
T ss_pred HHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC-CCCCcchhhcCCcc
Confidence 3345679999997 4688999999999874321 12 456778888999999999963 34677899999999
Q ss_pred HHHHHHHHHHcCCCcEEEEc
Q 003716 771 KRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 771 KrRLsiA~ALig~P~vlLLD 790 (800)
+||+-+||-|..+|++|+..
T Consensus 409 qQK~IlaREl~~~p~lLI~~ 428 (501)
T COG3845 409 QQKLILARELARRPDLLIAA 428 (501)
T ss_pred eehhhhhhhhccCCCEEEEc
Confidence 99999999999999999986
No 380
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.62 E-value=9.4e-16 Score=168.86 Aligned_cols=139 Identities=25% Similarity=0.303 Sum_probs=108.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~ 705 (800)
.+.-.+++|.|++. .|+-=.=++..||++|++||||-||||+.++|+|.++|++|. ..+ -
T Consensus 342 lv~y~~~~k~~g~F-------~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~---------~ 401 (591)
T COG1245 342 LVEYPDLKKTYGDF-------KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED---------L 401 (591)
T ss_pred eeecchheeecCce-------EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc---------c
Confidence 45667788888742 333334567889999999999999999999999999999997 222 3
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCc
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~ 785 (800)
+++|=||.-.--.+.||++.|.-..+-. ... .....++++-++|+ ...++++.+||||+.|||+||.||..+++
T Consensus 402 ~vSyKPQyI~~~~~gtV~~~l~~~~~~~-~~~---s~~~~ei~~pl~l~--~i~e~~v~~LSGGELQRvaIaa~L~reAD 475 (591)
T COG1245 402 KVSYKPQYISPDYDGTVEDLLRSAIRSA-FGS---SYFKTEIVKPLNLE--DLLERPVDELSGGELQRVAIAAALSREAD 475 (591)
T ss_pred eEeecceeecCCCCCcHHHHHHHhhhhh-ccc---chhHHhhcCccchH--HHHhcccccCCchhHHHHHHHHHhccccC
Confidence 4889999865556679999776432211 111 22345677888886 58999999999999999999999999999
Q ss_pred EEEEc
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 vlLLD 790 (800)
+.+||
T Consensus 476 lYllD 480 (591)
T COG1245 476 LYLLD 480 (591)
T ss_pred EEEec
Confidence 99999
No 381
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.61 E-value=3.1e-15 Score=168.96 Aligned_cols=155 Identities=24% Similarity=0.277 Sum_probs=121.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
+.+|++++|+..=+.. ...+++|+||+|++|+-+-|.||||||||+|+|+|.|+-+-++|++.--...-
T Consensus 431 Dn~i~~e~v~l~tPt~----g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~------- 499 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN----GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG------- 499 (659)
T ss_pred cceEEeeeeeecCCCC----CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-------
Confidence 4689999999988752 35789999999999999999999999999999999999999999986543211
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCC----Ccccccc-----CCCCChhHHHH
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFH----GGVADKQ-----AGKYSGGMKRR 773 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~-~lkg~~~~~~~~~v~~~L~~l~L~~----~~~~d~~-----~~~LSGG~KrR 773 (800)
-+.+-|+||.|..-.. |.||.+.+-. ......+...++.+.+.|+.++|.| .+-.|.+ ...||+|||||
T Consensus 500 ~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQR 578 (659)
T KOG0060|consen 500 PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQR 578 (659)
T ss_pred CCceEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHH
Confidence 1458899999987665 9999988752 2222233344567788888888764 0112222 24699999999
Q ss_pred HHHHHHHcCCCcEEEEc
Q 003716 774 LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 774 LsiA~ALig~P~vlLLD 790 (800)
++.||-+..+|++-+||
T Consensus 579 La~ARLfy~kPk~AiLD 595 (659)
T KOG0060|consen 579 LAFARLFYHKPKFAILD 595 (659)
T ss_pred HHHHHHHhcCCceEEee
Confidence 99999999999999999
No 382
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.60 E-value=3.2e-15 Score=167.75 Aligned_cols=160 Identities=20% Similarity=0.338 Sum_probs=112.6
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEE--CCeecCccHH
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV--QGLDIRTDMD 701 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i--~G~~i~~~~~ 701 (800)
...+.++++++.|.+ +..++|++|++.+||-+||+|+|||||||+|++|+|-+.|..-++-+ -.+++.....
T Consensus 73 s~dvk~~sls~s~~g------~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG------VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEK 146 (614)
T ss_pred cccceeeeeeeccCC------ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchH
Confidence 446899999999975 67999999999999999999999999999999999999886554433 3333322111
Q ss_pred Hh-----------hcceEEecCCCCCC-CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChh
Q 003716 702 RI-----------YTSMGVCPQEDLLW-ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 769 (800)
Q Consensus 702 ~~-----------r~~IGycpQ~~~L~-~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG 769 (800)
.. ++++-|--.+-... ++---.+-...|.++-.+..+..+.++.++|..++... +..++++.++|||
T Consensus 147 ~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~-~m~~k~~~~~SgG 225 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLS-EMQDKKVKDLSGG 225 (614)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCH-hHHHHHhhccCch
Confidence 11 11111111000000 11011122223444444455666777888888888774 6889999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEc
Q 003716 770 MKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 770 ~KrRLsiA~ALig~P~vlLLD 790 (800)
+++|+++||||..+|+++|||
T Consensus 226 wrmR~aLAr~Lf~kP~LLLLD 246 (614)
T KOG0927|consen 226 WRMRAALARALFQKPDLLLLD 246 (614)
T ss_pred HHHHHHHHHHHhcCCCEEEec
Confidence 999999999999999999999
No 383
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.59 E-value=4.7e-16 Score=152.90 Aligned_cols=136 Identities=21% Similarity=0.267 Sum_probs=114.2
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc-cHHHhhcceEEecCCCCCCCCCCHHHH
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREH 725 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~-~~~~~r~~IGycpQ~~~L~~~LTv~E~ 725 (800)
-+-.+|.++..||+.-++||||||||||+-.|+|+++ -+|+|.++|+++.. ...+..++-.|..|+..-...|.|.+.
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 3667899999999999999999999999999999975 68999999999864 344556667899888766666788887
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC-------CCcEEEEc
Q 003716 726 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG-------NPKVRLSL 790 (800)
Q Consensus 726 L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig-------~P~vlLLD 790 (800)
|.++ .+.++....++++...++|. ++..+.+.+|||||-|||-+|...+. ..++++||
T Consensus 93 L~L~-----qP~~~~a~~i~~i~~~L~l~--DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllD 157 (248)
T COG4138 93 LTLH-----QPDKTRTELLNDVAGALALD--DKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLD 157 (248)
T ss_pred hhhc-----CchHHHHHHHHHHHhhhccc--chhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEec
Confidence 7765 25567788899999999997 48899999999999999999987765 45688888
No 384
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.58 E-value=8.1e-16 Score=158.92 Aligned_cols=141 Identities=14% Similarity=0.065 Sum_probs=92.0
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEc-CCcEEEEEcCCCCcHHHHHHHHhCC-CCCCcceEEECC-eecCccHHH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALP-SGECFGMLGPNGAGKTTFISMMIGI-TRTTSGTAYVQG-LDIRTDMDR 702 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~-~GEi~gLLGpNGAGKTTLlk~LtGl-~~ptsG~I~i~G-~~i~~~~~~ 702 (800)
.|+++|+. .|.+ -++++|... +||+++|+|||||||||++++|++. ..+..+....+. .+.. ...+
T Consensus 5 ~i~l~nf~-~y~~---------~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~-~~~~ 73 (213)
T cd03279 5 KLELKNFG-PFRE---------EQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVF-APGE 73 (213)
T ss_pred EEEEECCc-CcCC---------ceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHh-cCCC
Confidence 47888887 6643 156677654 5999999999999999999999964 344444444320 0110 1122
Q ss_pred hhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 703 ~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig 782 (800)
.+..|++.+|++... .++.. ..+++.++..+.+ .++..++. ++.++++.+||||||||+++|+||+.
T Consensus 74 ~~~~v~~~f~~~~~~--~~~~r-------~~gl~~~~~~~~~--~l~~g~l~--~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 74 DTAEVSFTFQLGGKK--YRVER-------SRGLDYDQFTRIV--LLPQGEFD--RFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred ccEEEEEEEEECCeE--EEEEE-------ecCCCHHHHHHhh--hhhhcchH--HHhcCCccccCHHHHHHHHHHHHHHh
Confidence 345699999986321 11111 1144433322222 24444454 47799999999999999999999974
Q ss_pred ----------CCcEEEEc
Q 003716 783 ----------NPKVRLSL 790 (800)
Q Consensus 783 ----------~P~vlLLD 790 (800)
+|++++||
T Consensus 141 ~p~~~~~~~~~~~~lllD 158 (213)
T cd03279 141 SEVLQNRGGARLEALFID 158 (213)
T ss_pred HHHhhhccCCCCCEEEEe
Confidence 67999999
No 385
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.57 E-value=2e-15 Score=183.52 Aligned_cols=145 Identities=26% Similarity=0.336 Sum_probs=121.9
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CcceEEECCeecCccHHHhhcceEEecCCCCCCCCC
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT---TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 720 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p---tsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~L 720 (800)
...+++|++.-+++||.+-++||.|||||||++.++|-++- ..|+|..+|++.+.... ++.++|++|+|..+++|
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~--~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP--KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc--CceEEecccccccccee
Confidence 35799999999999999999999999999999999998753 35799999999876444 67899999999999999
Q ss_pred CHHHHHHHHhhhcCC----CchhHHH----HHHHHHHHcCCCCC---ccccccCCCCChhHHHHHHHHHHHcCCCcEEEE
Q 003716 721 TGREHLLFYGRLKNL----KGPALTQ----AVEESLKSVNLFHG---GVADKQAGKYSGGMKRRLSVAISLIGNPKVRLS 789 (800)
Q Consensus 721 Tv~E~L~~~~~lkg~----~~~~~~~----~v~~~L~~l~L~~~---~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLL 789 (800)
||+|.|.|.++.++. ++-+.++ ..+.+++.+||.+. .+-|.-.+-.|||||+||++|-+++++++++++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 999999999998865 1111122 46789999999851 233444557999999999999999999999999
Q ss_pred c
Q 003716 790 L 790 (800)
Q Consensus 790 D 790 (800)
|
T Consensus 285 D 285 (1391)
T KOG0065|consen 285 D 285 (1391)
T ss_pred e
Confidence 9
No 386
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.57 E-value=1.6e-15 Score=155.99 Aligned_cols=115 Identities=22% Similarity=0.188 Sum_probs=84.5
Q ss_pred EEEEcCCcEEEEEcCCCCcHHHHHHHH----hCCCCCCcceEEECCeecCccHHHhhcceEEecCCC-----CCCCCCCH
Q 003716 652 SLALPSGECFGMLGPNGAGKTTFISMM----IGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQED-----LLWETLTG 722 (800)
Q Consensus 652 sl~I~~GEi~gLLGpNGAGKTTLlk~L----tGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~-----~L~~~LTv 722 (800)
++++.+| +++|+||||||||||+++| .|..+|++|.+..+...+.. ...+..+++++|++ .+...+|+
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~--~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE--GEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC--CCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 3556677 9999999999999999999 49999988877622222222 22356799999998 34455677
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHH------HHHHHHHcCCCcEEEEc
Q 003716 723 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR------LSVAISLIGNPKVRLSL 790 (800)
Q Consensus 723 ~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrR------LsiA~ALig~P~vlLLD 790 (800)
.|++.+. + ++.+++ ..++++++||+||||| +++|+|++.+|++++||
T Consensus 94 ~~~~~~~------~----~~~~~~-----------~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlD 146 (204)
T cd03240 94 LENVIFC------H----QGESNW-----------PLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALD 146 (204)
T ss_pred hhceeee------c----hHHHHH-----------HHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEc
Confidence 7776531 1 112222 2367789999999996 78999999999999999
No 387
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=6.8e-15 Score=164.38 Aligned_cols=144 Identities=24% Similarity=0.359 Sum_probs=101.5
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
..-|.+.+.+..|++ +..|++-++++..|..+||+|+||+|||||||+|+. |.|.+-. +..+ +
T Consensus 78 ~~Di~~~~fdLa~G~------k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~--veqE---~ 140 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG------KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFH--VEQE---V 140 (582)
T ss_pred ccceeeeeeeeeecc------hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccC--chhh---e
Confidence 345888999999985 679999999999999999999999999999999987 4443322 2111 1
Q ss_pred hcceEEecC-CCCCCCCCCHHHHHHHHhhhcCCCch-hHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc
Q 003716 704 YTSMGVCPQ-EDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 704 r~~IGycpQ-~~~L~~~LTv~E~L~~~~~lkg~~~~-~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
+. -+++- .+.+-.++.+.+-+ .+-+.+... +.++...++|..+|.++ +...+++++||||.|-||++||||.
T Consensus 141 ~g--~~t~~~~~~l~~D~~~~dfl---~~e~~l~~~~~l~ei~~~~L~glGFt~-emq~~pt~slSGGWrMrlaLARAlf 214 (582)
T KOG0062|consen 141 RG--DDTEALQSVLESDTERLDFL---AEEKELLAGLTLEEIYDKILAGLGFTP-EMQLQPTKSLSGGWRMRLALARALF 214 (582)
T ss_pred ec--cchHHHhhhhhccHHHHHHH---HhhhhhhccchHHHHHHHHHHhCCCCH-HHHhccccccCcchhhHHHHHHHHh
Confidence 00 01111 11222332222222 222112112 33444555999999986 6889999999999999999999999
Q ss_pred CCCcEEEEc
Q 003716 782 GNPKVRLSL 790 (800)
Q Consensus 782 g~P~vlLLD 790 (800)
.+|++||||
T Consensus 215 ~~pDlLLLD 223 (582)
T KOG0062|consen 215 AKPDLLLLD 223 (582)
T ss_pred cCCCEEeec
Confidence 999999999
No 388
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.51 E-value=6.5e-14 Score=141.02 Aligned_cols=151 Identities=23% Similarity=0.299 Sum_probs=111.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHH-H
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD-R 702 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~-~ 702 (800)
+.+|++.++++.|+.. -+++-|+|++++.|...-|+|.||||||||+|+|+|-.-.-.|.|.+.|.+--.+.. .
T Consensus 11 ~~aievsgl~f~y~~~-----dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~ 85 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS-----DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE 85 (291)
T ss_pred cceEEEeccEEecccC-----CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc
Confidence 4689999999999863 379999999999999999999999999999999999877777999999987632110 0
Q ss_pred hhcceEEecC----------CCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHH
Q 003716 703 IYTSMGVCPQ----------EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 772 (800)
Q Consensus 703 ~r~~IGycpQ----------~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~Kr 772 (800)
-.....|.-- +-.+-.++++.+ +.| |+.+.+ .++-+++++.+++. ..-+.+.+|-||||
T Consensus 86 ~Sgdl~YLGgeW~~~~~~agevplq~D~sae~-mif-----gV~g~d-p~Rre~LI~iLDId----l~WRmHkvSDGqrR 154 (291)
T KOG2355|consen 86 SSGDLSYLGGEWSKTVGIAGEVPLQGDISAEH-MIF-----GVGGDD-PERREKLIDILDID----LRWRMHKVSDGQRR 154 (291)
T ss_pred ccCceeEecccccccccccccccccccccHHH-HHh-----hccCCC-hhHhhhhhhheecc----ceEEEeeccccchh
Confidence 0111233211 222334555544 433 222222 25566777777774 45678899999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
||.|++.|+..=+|+|||
T Consensus 155 RVQicMGLL~PfkVLLLD 172 (291)
T KOG2355|consen 155 RVQICMGLLKPFKVLLLD 172 (291)
T ss_pred hhHHHHhcccceeEEEee
Confidence 999999999999999999
No 389
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.48 E-value=2.4e-14 Score=159.88 Aligned_cols=144 Identities=25% Similarity=0.372 Sum_probs=108.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
+.|.++|+-..-+. ...++..++|+|++|-.+-|+||||||||+|+|+|.|+-|...|...+- -+
T Consensus 480 ~gI~lenIpvItP~-----~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P----------~~ 544 (728)
T KOG0064|consen 480 NGIILENIPVITPA-----GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP----------RP 544 (728)
T ss_pred cceEEecCceeccC-----cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC----------CC
Confidence 46889998888775 3568999999999999999999999999999999999999877766431 13
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHh-----hhcCCCchhHHHHHHHHHHHcCCCCCccccccC---------CCCChhH
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYG-----RLKNLKGPALTQAVEESLKSVNLFHGGVADKQA---------GKYSGGM 770 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~-----~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~---------~~LSGG~ 770 (800)
.+|-|+||.|..= .=|.||.+.+-- +-||..++ ..+.+|+.++|+| .+.+-. ..||||+
T Consensus 545 ~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~----dL~~iL~~v~L~~--i~qr~~g~da~~dWkd~LsgGe 617 (728)
T KOG0064|consen 545 NNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQ----DLEAILDIVHLEH--ILQREGGWDAVRDWKDVLSGGE 617 (728)
T ss_pred cceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCHH----HHHHHHHHhhHHH--HHHhccChhhhccHHhhccchH
Confidence 4599999997643 235566554321 12455543 4455666666642 222222 3699999
Q ss_pred HHHHHHHHHHcCCCcEEEEc
Q 003716 771 KRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 771 KrRLsiA~ALig~P~vlLLD 790 (800)
|||+.+||.+-++|+..+||
T Consensus 618 kQR~~mARm~yHrPkyalLD 637 (728)
T KOG0064|consen 618 KQRMGMARMFYHRPKYALLD 637 (728)
T ss_pred HHHHHHHHHHhcCcchhhhh
Confidence 99999999999999999999
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.46 E-value=1.5e-13 Score=140.90 Aligned_cols=122 Identities=15% Similarity=0.108 Sum_probs=84.2
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc--cHHHhhcceEEecCCCCCCCCCCHHH
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRIYTSMGVCPQEDLLWETLTGRE 724 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~--~~~~~r~~IGycpQ~~~L~~~LTv~E 724 (800)
.++++++++.+| +.+|+|||||||||++..|........+ ....|..+.. ........|++.+|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~----- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN----- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC-----
Confidence 457788888887 8899999999999999998754332211 1111321110 001113568899988776651
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH----cCCCcEEEEc
Q 003716 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL----IGNPKVRLSL 790 (800)
Q Consensus 725 ~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL----ig~P~vlLLD 790 (800)
. .....++.++++++. . +..++++++||+|||||++||+|+ +.+|++++||
T Consensus 84 ------~----~~~~~~~~~~~~l~~---~--~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlD 138 (198)
T cd03276 84 ------P----LCVLSQDMARSFLTS---N--KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLD 138 (198)
T ss_pred ------c----CCHHHHHHHHHHhcc---c--cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEec
Confidence 0 111123567777776 3 467999999999999999999999 6999999999
No 391
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.46 E-value=2.7e-13 Score=165.87 Aligned_cols=65 Identities=22% Similarity=0.214 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC---cEEEEc
Q 003716 719 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---KVRLSL 790 (800)
Q Consensus 719 ~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P---~vlLLD 790 (800)
.||+.|++.|+..++++ ....+.|+.+||.+ ...++++.+||||||||+.||++|+.+| ++++||
T Consensus 791 ~ltv~E~l~~f~~~~~i------~~~l~~L~~vgL~~-l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILD 858 (943)
T PRK00349 791 DMTVEEALEFFEAIPKI------ARKLQTLVDVGLGY-IKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILD 858 (943)
T ss_pred cCcHHHHHHHHHhchhh------hHHHHHHHHCCCCc-ccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 37999999998776432 23467899999963 2479999999999999999999999999 999999
No 392
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.45 E-value=3.1e-13 Score=172.06 Aligned_cols=151 Identities=17% Similarity=0.223 Sum_probs=103.3
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHH---------HHhCCCCCCcc----e----
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFIS---------MMIGITRTTSG----T---- 688 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk---------~LtGl~~ptsG----~---- 688 (800)
.+++++++. ..|+++|++|++||++||.|+||||||||++ .|.|...+-.+ .
T Consensus 600 ~L~l~~~~~-----------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~v 668 (1809)
T PRK00635 600 TLTLSKATK-----------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRL 668 (1809)
T ss_pred eEEEecccc-----------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCccccccccccccee
Confidence 467777641 2699999999999999999999999999999 67776433111 1
Q ss_pred EEECCeecCc-----------cHHHhh---------cceE-----EecCC------------------------------
Q 003716 689 AYVQGLDIRT-----------DMDRIY---------TSMG-----VCPQE------------------------------ 713 (800)
Q Consensus 689 I~i~G~~i~~-----------~~~~~r---------~~IG-----ycpQ~------------------------------ 713 (800)
|.|+-..+.. -.+++| +..| +.++.
T Consensus 669 i~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~G 748 (1809)
T PRK00635 669 VHITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLG 748 (1809)
T ss_pred EEecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCC
Confidence 2333322211 011222 1111 11111
Q ss_pred --------CCCCCCCCHHHHHHHHhhh---cCCCchhHHHHHHHHHHHcCCCCCcc-ccccCCCCChhHHHHHHHHHHHc
Q 003716 714 --------DLLWETLTGREHLLFYGRL---KNLKGPALTQAVEESLKSVNLFHGGV-ADKQAGKYSGGMKRRLSVAISLI 781 (800)
Q Consensus 714 --------~~L~~~LTv~E~L~~~~~l---kg~~~~~~~~~v~~~L~~l~L~~~~~-~d~~~~~LSGG~KrRLsiA~ALi 781 (800)
...|..+||.|+|.+...- .+...++..+++ +.|+.+||. +. .++++.+||||||||++||+||+
T Consensus 749 kRy~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~--~l~l~q~~~tLSGGE~QRV~LAraL~ 825 (1809)
T PRK00635 749 KRFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLD--YLPLGRPLSSLSGGEIQRLKLAYELL 825 (1809)
T ss_pred cccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCc--chhhcCccccCCHHHHHHHHHHHHHh
Confidence 1256788999999875431 122344556666 588999996 34 69999999999999999999997
Q ss_pred ---CCCcEEEEc
Q 003716 782 ---GNPKVRLSL 790 (800)
Q Consensus 782 ---g~P~vlLLD 790 (800)
.+|+++|||
T Consensus 826 ~~~~~P~LLILD 837 (1809)
T PRK00635 826 APSKKPTLYVLD 837 (1809)
T ss_pred hcCCCCCEEEEe
Confidence 699999999
No 393
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.8e-13 Score=149.53 Aligned_cols=143 Identities=26% Similarity=0.324 Sum_probs=116.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
.+.+-++++++.|++ .++.+++++|.|.-...++|+||||.|||||+++|+|-+.|+.|+..-+ -
T Consensus 584 PPvLGlH~VtFgy~g-----qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn----------h 648 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPG-----QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN----------H 648 (807)
T ss_pred CCeeecccccccCCC-----CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc----------c
Confidence 356789999999986 4689999999999999999999999999999999999999999976432 2
Q ss_pred hcceEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCcccc-ccCCCCChhHHHHHHHHHHH
Q 003716 704 YTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD-KQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 704 r~~IGycpQ~~--~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d-~~~~~LSGG~KrRLsiA~AL 780 (800)
|-+||+--|+. .|-..-|..|.|. +..+++. +.+++.|-.+||.. +++ -++..||||||-||++|---
T Consensus 649 rL~iG~FdQh~~E~L~~Eetp~EyLq---r~FNlpy----q~ARK~LG~fGL~s--HAHTikikdLSGGQKaRValaeLa 719 (807)
T KOG0066|consen 649 RLRIGWFDQHANEALNGEETPVEYLQ---RKFNLPY----QEARKQLGTFGLAS--HAHTIKIKDLSGGQKARVALAELA 719 (807)
T ss_pred eeeeechhhhhHHhhccccCHHHHHH---HhcCCCh----HHHHHHhhhhhhhh--ccceEeeeecCCcchHHHHHHHHh
Confidence 34699999984 3555556666553 4445554 34567788899973 444 57899999999999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
++.|+|||||
T Consensus 720 l~~PDvlILD 729 (807)
T KOG0066|consen 720 LGGPDVLILD 729 (807)
T ss_pred cCCCCEEEec
Confidence 9999999999
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=3.5e-13 Score=150.87 Aligned_cols=148 Identities=18% Similarity=0.159 Sum_probs=123.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHh
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~ 703 (800)
.+.+++.++++.|... .-..+.+++++++.-+..+++|+||+||||++|++.|...|++|.+.+.+
T Consensus 360 ~p~l~i~~V~f~y~p~----~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~---------- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPS----EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP---------- 425 (582)
T ss_pred CCeeEEEeeeccCCCc----chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc----------
Confidence 4568999999999642 11689999999999999999999999999999999999999999987754
Q ss_pred hcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~ 783 (800)
|.+|+|-.|+..=+-++.+-+--.+.+..-|. .++++++.+..+||.. +.+.+.+.+||||||-||.+|.....+
T Consensus 426 r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~----~~ee~r~hl~~~Gl~g-~la~~si~~LSGGQKsrvafA~~~~~~ 500 (582)
T KOG0062|consen 426 RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK----TEEEIRRHLGSFGLSG-ELALQSIASLSGGQKSRVAFAACTWNN 500 (582)
T ss_pred cceecchhHhhhhHHHHHhHHHHHHHHhCCCC----CHHHHHHHHHhcCCCc-hhhhccccccCCcchhHHHHHHHhcCC
Confidence 57799999997766555555533333333344 4677889999999984 788888999999999999999999999
Q ss_pred CcEEEEc
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~vlLLD 790 (800)
|.+|+||
T Consensus 501 PhlLVLD 507 (582)
T KOG0062|consen 501 PHLLVLD 507 (582)
T ss_pred CcEEEec
Confidence 9999999
No 395
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.36 E-value=1.3e-12 Score=142.88 Aligned_cols=129 Identities=29% Similarity=0.389 Sum_probs=99.9
Q ss_pred cceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCC--------CCCCcceEEECCeecCccHHHhhcceEEecCC-C
Q 003716 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--------TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQE-D 714 (800)
Q Consensus 644 ~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl--------~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~-~ 714 (800)
...+++|+||+|++||+++++|++||||||+++||.|. ++|++|.|.+--..+ -..+|-. +
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~----------~a~iPge~E 464 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV----------SALIPGEYE 464 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch----------hhccCcccc
Confidence 45799999999999999999999999999999999984 468999887643221 1223332 1
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 715 LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 715 ~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.-+..-|+.||+.- . .+ ....+.++|+..||.+.-....+.++||-|||-|+.||.++...|.+++.|
T Consensus 465 p~f~~~tilehl~s--~----tG--D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 465 PEFGEVTILEHLRS--K----TG--DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cccCchhHHHHHhh--c----cC--chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 22335688888742 1 11 123567899999998755667788999999999999999999999999998
No 396
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.36 E-value=5.6e-13 Score=134.58 Aligned_cols=163 Identities=18% Similarity=0.209 Sum_probs=117.9
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CcceEEECCeecCc-cH
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT----TSGTAYVQGLDIRT-DM 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p----tsG~I~i~G~~i~~-~~ 700 (800)
.+.++||+..+....| ...||+++|+++.+||+-||+|++|+|||-.-|.|+|..+- |.....+++.|+.. ..
T Consensus 3 LLDIrnL~IE~~TsqG--~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 3 LLDIRNLTIEFKTSQG--WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred cccccceEEEEecCCC--ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 4568899988876544 57799999999999999999999999999999999998763 55666777777643 12
Q ss_pred HH----hhcceEEecCCCC--CCCCCCHHHHHHHH---hhhcCCCc---hhHHHHHHHHHHHcCCCC-CccccccCCCCC
Q 003716 701 DR----IYTSMGVCPQEDL--LWETLTGREHLLFY---GRLKNLKG---PALTQAVEESLKSVNLFH-GGVADKQAGKYS 767 (800)
Q Consensus 701 ~~----~r~~IGycpQ~~~--L~~~LTv~E~L~~~---~~lkg~~~---~~~~~~v~~~L~~l~L~~-~~~~d~~~~~LS 767 (800)
.+ +-+.|++++|++. |.+.-++-..|.-- -..+|.-. .=.+.++-++|.++|+.+ .+....++.+|.
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 22 2356889999975 44433332222110 00111100 012446678999999973 234557899999
Q ss_pred hhHHHHHHHHHHHcCCCcEEEEc
Q 003716 768 GGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 768 GG~KrRLsiA~ALig~P~vlLLD 790 (800)
.|+-|||.||+|++..|++++.|
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIAD 183 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIAD 183 (330)
T ss_pred cCcceeeeeehhhccCCceEecc
Confidence 99999999999999999999999
No 397
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.35 E-value=1e-12 Score=121.55 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=63.2
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHH-HhhcceEEecCCCCCCCCCCHH
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD-RIYTSMGVCPQEDLLWETLTGR 723 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~-~~r~~IGycpQ~~~L~~~LTv~ 723 (800)
+.++++++|++++||+++|+||||||||||++++. +|++.++|.|+..... +.++.++++||+ ++. -|++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IRLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hhHH
Confidence 46999999999999999999999999999999986 8999999999865333 345567788777 444 3899
Q ss_pred HHHHH
Q 003716 724 EHLLF 728 (800)
Q Consensus 724 E~L~~ 728 (800)
|||.+
T Consensus 73 ~Ni~~ 77 (107)
T cd00820 73 LNIFL 77 (107)
T ss_pred hhcee
Confidence 99987
No 398
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.31 E-value=9.5e-13 Score=139.18 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=88.6
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCee--cCccH---
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD--IRTDM--- 700 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~--i~~~~--- 700 (800)
.|+++|. |.|.+ .. ++...++ +.+|+|||||||||++.+|.+.+.++.|++...+.+ +....
T Consensus 3 ~i~l~nf-~~~~~------~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~ 69 (247)
T cd03275 3 RLELENF-KSYKG------RH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGK 69 (247)
T ss_pred EEEEECc-cccCC------Ce-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCcccc
Confidence 3667776 66642 11 1222334 999999999999999999999998887877654421 11110
Q ss_pred ---HHhhcceEEecCCCCC-CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC--------------------
Q 003716 701 ---DRIYTSMGVCPQEDLL-WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-------------------- 756 (800)
Q Consensus 701 ---~~~r~~IGycpQ~~~L-~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~-------------------- 756 (800)
....-.+.+..|++.. .-..++++....| .+.| .....+.++++++.+++...
T Consensus 70 ~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~-~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~ 146 (247)
T cd03275 70 PDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY-RING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPP 146 (247)
T ss_pred CCCceEEEEEEEEcCCCcEEEEEEEEECCceEE-EECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCc
Confidence 1112234454444321 0001111111101 1122 12234556788888888421
Q ss_pred ccccccCCCCChhHHHHHHHHHHHcCC----CcEEEEc
Q 003716 757 GVADKQAGKYSGGMKRRLSVAISLIGN----PKVRLSL 790 (800)
Q Consensus 757 ~~~d~~~~~LSGG~KrRLsiA~ALig~----P~vlLLD 790 (800)
...++++.+||||||||+++|+|++.+ |++++||
T Consensus 147 ~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllD 184 (247)
T cd03275 147 GKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLD 184 (247)
T ss_pred chhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEe
Confidence 122445689999999999999999864 9999999
No 399
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.28 E-value=1.3e-11 Score=151.10 Aligned_cols=65 Identities=20% Similarity=0.184 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC---CCcEEEEc
Q 003716 719 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG---NPKVRLSL 790 (800)
Q Consensus 719 ~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig---~P~vlLLD 790 (800)
+||+.|.+.|+..++++ ....++|+.+||.+ ...++++.+||||||||+.||++|+. +|++++||
T Consensus 789 ~~tv~e~~~f~~~~~~i------~~~l~~L~~~gL~~-l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILD 856 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPSI------SRKLQTLCDVGLGY-IKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILD 856 (924)
T ss_pred CCcHHHHHHHHHhccch------hHHHHHHHHcCCCc-hhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEE
Confidence 57888988888766432 13457889999963 24699999999999999999999997 59999999
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.28 E-value=2.3e-12 Score=142.51 Aligned_cols=142 Identities=23% Similarity=0.313 Sum_probs=91.4
Q ss_pred eEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEE-----------CCeecCcc
Q 003716 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-----------QGLDIRTD 699 (800)
Q Consensus 631 nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i-----------~G~~i~~~ 699 (800)
++..+|+.. --.|.++- ...+|+++||+|+||-||||.+|+|+|.+.|.=|+--= .|.++..-
T Consensus 79 e~vHRYg~N-----gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~Y 152 (591)
T COG1245 79 EVVHRYGVN-----GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNY 152 (591)
T ss_pred cceeeccCC-----ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHH
Confidence 456777631 12222222 34689999999999999999999999999998775410 11111100
Q ss_pred HHHhhc---ceEEecCCCCC----CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHH
Q 003716 700 MDRIYT---SMGVCPQEDLL----WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 772 (800)
Q Consensus 700 ~~~~r~---~IGycpQ~~~L----~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~Kr 772 (800)
..++.. ++..=||.--+ +.. ||.|-|.- .+.+...+++.++++|. ...|+.+++||||+-|
T Consensus 153 F~~l~~g~~r~v~K~QYVd~iPk~~KG-~v~elLk~---------~de~g~~devve~l~L~--nvl~r~v~~LSGGELQ 220 (591)
T COG1245 153 FKKLYEGELRAVHKPQYVDLIPKVVKG-KVGELLKK---------VDERGKFDEVVERLGLE--NVLDRDVSELSGGELQ 220 (591)
T ss_pred HHHHHcCCcceecchHHHHHHHHHhcc-hHHHHHHh---------hhhcCcHHHHHHHhcch--hhhhhhhhhcCchHHH
Confidence 011110 12222332111 111 33333321 11123567889999997 5899999999999999
Q ss_pred HHHHHHHHcCCCcEEEEc
Q 003716 773 RLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 773 RLsiA~ALig~P~vlLLD 790 (800)
|++||.|+..++++++.|
T Consensus 221 r~aIaa~l~rdADvY~FD 238 (591)
T COG1245 221 RVAIAAALLRDADVYFFD 238 (591)
T ss_pred HHHHHHHHhccCCEEEEc
Confidence 999999999999999999
No 401
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=8.9e-11 Score=128.83 Aligned_cols=158 Identities=21% Similarity=0.337 Sum_probs=118.4
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCcceEEECCeecCcc----
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTD---- 699 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtG--l~~ptsG~I~i~G~~i~~~---- 699 (800)
-|.++|.+.+-.+ +..+.+-|+.|--|..+||+||||-|||||++-|+. +--|..=++++..+++..+
T Consensus 264 DIKiEnF~ISA~G------k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~A 337 (807)
T KOG0066|consen 264 DIKIENFDISAQG------KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSA 337 (807)
T ss_pred cceeeeeeeeccc------ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHH
Confidence 4788888877654 568999999999999999999999999999999986 3345566777877776321
Q ss_pred HHHh----hcceEEecCCC-----CCCCCCCHHHHHH-HHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChh
Q 003716 700 MDRI----YTSMGVCPQED-----LLWETLTGREHLL-FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 769 (800)
Q Consensus 700 ~~~~----r~~IGycpQ~~-----~L~~~LTv~E~L~-~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG 769 (800)
.+.+ .++....-..+ .--.+.|+.|.|. .+..++.+.....+.+++++|.-+|... +..+++...+|||
T Consensus 338 i~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFsk-EMQ~rPt~kFSGG 416 (807)
T KOG0066|consen 338 IDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSK-EMQERPTTKFSGG 416 (807)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCCh-hHhcCCccccCCc
Confidence 1100 01111111111 1123568888875 3556666655666778999999999985 6889999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEc
Q 003716 770 MKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 770 ~KrRLsiA~ALig~P~vlLLD 790 (800)
.|-|+|+||||...|.++.||
T Consensus 417 WRMRvSLARALflEPTLLMLD 437 (807)
T KOG0066|consen 417 WRMRVSLARALFLEPTLLMLD 437 (807)
T ss_pred eeeehhHHHHHhcCceeeeec
Confidence 999999999999999999999
No 402
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.09 E-value=8.5e-11 Score=120.42 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=65.2
Q ss_pred eeeeeEEEEcCCc-EEEEEcCCCCcHHHHHHHHh--------CCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCC
Q 003716 647 AVNGLSLALPSGE-CFGMLGPNGAGKTTFISMMI--------GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW 717 (800)
Q Consensus 647 al~~lsl~I~~GE-i~gLLGpNGAGKTTLlk~Lt--------Gl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~ 717 (800)
.+-++|+++.+|+ +++|.||||+||||++|+|. |...|....+ .++|+.|.-
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----------------~~~~~~~~~--- 76 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----------------SLPVFENIF--- 76 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----------------cCcCccEEE---
Confidence 4567999999995 89999999999999999998 5444421111 133333321
Q ss_pred CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 718 ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 718 ~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
..++.. +..++..+++|+||||++.++++ +.+|+++++|
T Consensus 77 -------------------------------~~lg~~--~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllD 115 (200)
T cd03280 77 -------------------------------ADIGDE--QSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLD 115 (200)
T ss_pred -------------------------------EecCch--hhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEc
Confidence 111221 23456678999999999999988 4899999999
No 403
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.07 E-value=3.8e-10 Score=124.18 Aligned_cols=128 Identities=29% Similarity=0.381 Sum_probs=97.8
Q ss_pred ceeeeeeEEEEcCC-----cEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCC
Q 003716 645 KVAVNGLSLALPSG-----ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWET 719 (800)
Q Consensus 645 ~~al~~lsl~I~~G-----Ei~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~ 719 (800)
+.-+-+..|.|+.| |++..+|.||.||||+++|++|.++|++|. ++. .-.++|=||.-.-=..
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p------~lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIP------VLNVSYKPQKISPKRE 416 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccc------ccceeccccccCcccc
Confidence 44567788888877 588999999999999999999999998762 111 1247777887554445
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 720 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 720 LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
-|||+.+. ..++. .-...+-+.+.++-+.++ ...|+.+.+||||++||+++|.+|-..+++.+.|
T Consensus 417 ~tvR~ll~--~kIr~--ay~~pqF~~dvmkpL~ie--~i~dqevq~lSggelQRval~KOGGKpAdvYliD 481 (592)
T KOG0063|consen 417 GTVRQLLH--TKIRD--AYMHPQFVNDVMKPLQIE--NIIDQEVQGLSGGELQRVALALCLGKPADVYLID 481 (592)
T ss_pred chHHHHHH--HHhHh--hhcCHHHHHhhhhhhhHH--HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEec
Confidence 58888654 23332 112245577778888886 4789999999999999999999999999999999
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.06 E-value=1.9e-10 Score=120.15 Aligned_cols=97 Identities=22% Similarity=0.177 Sum_probs=75.9
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceE-EecCCCCCCCCCCHH
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG-VCPQEDLLWETLTGR 723 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IG-ycpQ~~~L~~~LTv~ 723 (800)
+.+.+|++++..+|++++|.||||+||||+++++.- ..+..++| ++|.+....+
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~--------------------~~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV--------------------IVLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH--------------------HHHHHHhCCCcCcccEEEe-----
Confidence 468999999999999999999999999999999981 12344566 6776543222
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH--cCCCcEEEEc
Q 003716 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL--IGNPKVRLSL 790 (800)
Q Consensus 724 E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL--ig~P~vlLLD 790 (800)
.++++++.+++. |...+.+|+||++++.+++++ +.+|+++|||
T Consensus 72 -------------------~~~~il~~~~l~-----d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLD 116 (222)
T cd03285 72 -------------------IVDCILARVGAS-----DSQLKGVSTFMAEMLETAAILKSATENSLIIID 116 (222)
T ss_pred -------------------ccceeEeeeccc-----cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 123455566664 334688999999999999999 9999999999
No 405
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=99.05 E-value=3.9e-11 Score=128.62 Aligned_cols=166 Identities=22% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHchHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeccchHHHHHHHHHHHHHHHHH
Q 003716 367 ILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIAL 446 (800)
Q Consensus 367 ~v~~iV~EKe~klK~~m~m~Gl~~~~YWl~~~~~~l~~~~i~li~~ii~~~~~~~~~f~~~~~~~~fll~~lyg~s~I~~ 446 (800)
+...+++|||+|.++.|+++|++...||++.++++++.+++..++++++ +++...+...++...++++++|+++.+++
T Consensus 178 ~~~~i~~ek~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~i--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 255 (344)
T PF12698_consen 178 IAMSIVEEKESGTRERLLSSGVSPWSYWLSKFLAYFLVSLIQSLIIIII--IFGISGIPFGNFLLLLLLLLLFSLAFISF 255 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hchhhhhHhhhhhhHhhhcccCCHHHHHHHHHHHHhhHHHHHHHHHHHH--HhccccCcccchHHHHHHHHHHHHHHHHH
Confidence 3557899999999999999999999999999888776665544433332 33322233345666778899999999999
Q ss_pred HHHHHHhhCchhHHHHHHHHHHH-HhHHHHHHHHHHhhcCCCCchhhhhhhcccchHHHHHHHHHHHhhhhccccCCCCC
Q 003716 447 AFLVAALFSNVKTASVIGYICVF-GTGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDG 525 (800)
Q Consensus 447 ayllS~fFs~~~tA~v~~~i~~~-~~~ll~~~l~~~~~~~~~~~~~~~~~l~l~P~~~l~~gl~~l~~~~~~~~~~~~~g 525 (800)
++++|.+|++.+.|..++.++.+ ..++.+.+.. .+.. +..+..+..++|.+.+..++..+.. |
T Consensus 256 ~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~i~~~~P~~~~~~~~~~~~~-----------~ 319 (344)
T PF12698_consen 256 GFLISSFFKNSSTAISVASIIILLLSFLSGGFFP---LSSL--PSFLQWISSFLPFYWFIQGLRNIIY-----------G 319 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh---HHhh--HHHHHHHHHHhhHHHHHHHHHHHHH-----------h
Confidence 99999999999988765544333 2222111111 1111 1222334557899988888765541 1
Q ss_pred CccccCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 003716 526 MSWADLSDSENGMKEVLIIMFVEWLLLLGIAYY 558 (800)
Q Consensus 526 ~~w~~l~~~~~gi~~~li~m~i~~ilyllL~~y 558 (800)
- |. .+...++++++.+++++++++|
T Consensus 320 ~-~~-------~~~~~~~~l~~~~~v~~~l~~~ 344 (344)
T PF12698_consen 320 D-WS-------EIWISLIILLLFAVVYLLLAIL 344 (344)
T ss_dssp ---------------------------------
T ss_pred c-HH-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 1 11 1234677888888899888775
No 406
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.98 E-value=3.4e-10 Score=116.76 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=74.6
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHH
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E 724 (800)
+.+.+|+++++++|++++|.||||+||||++++++|+. +..++|. +- ++....+++.|
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------------------~la~~G~-~v-pa~~~~l~~~d 73 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA--------------------IMAQIGC-FV-PAEYATLPIFN 73 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH--------------------HHHHcCC-Cc-chhhcCccChh
Confidence 57999999999999999999999999999999998873 2333442 11 33444555555
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 725 ~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
++. ..++.. +..++..+++|+||||+ +.+.+++.+|++++||
T Consensus 74 ~I~---------------------~~~~~~--d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllD 115 (204)
T cd03282 74 RLL---------------------SRLSND--DSMERNLSTFASEMSET-AYILDYADGDSLVLID 115 (204)
T ss_pred hee---------------------EecCCc--cccchhhhHHHHHHHHH-HHHHHhcCCCcEEEec
Confidence 552 223332 24567788999999975 6778889999999999
No 407
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.97 E-value=2.8e-10 Score=116.93 Aligned_cols=125 Identities=14% Similarity=0.018 Sum_probs=84.2
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHH
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E 724 (800)
+.+.+|++++. |++++|+|||||||||++|+|+|... +...|.++.. -.+.+|++.++..+|+.|
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a--------~~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA--------SSFELPPVKIFTSIRVSD 78 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec--------CccCcccceEEEeccchh
Confidence 45788887776 79999999999999999999987543 1234555432 136677888999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC--ccccccCCCCChhHHHHHH--HHHHHcC-CCcEEE
Q 003716 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRLS--VAISLIG-NPKVRL 788 (800)
Q Consensus 725 ~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~--~~~d~~~~~LSGG~KrRLs--iA~ALig-~P~vlL 788 (800)
++.+.... ...+. +++.++++.+++.+. -..|++...++-..++.+. +...+.. ++.+++
T Consensus 79 ~l~~~~s~---~~~e~-~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiii 143 (199)
T cd03283 79 DLRDGISY---FYAEL-RRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGII 143 (199)
T ss_pred ccccccCh---HHHHH-HHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99763211 12233 568888988884211 2568888888877776553 3344433 334443
No 408
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.88 E-value=2.1e-09 Score=111.51 Aligned_cols=34 Identities=12% Similarity=0.080 Sum_probs=28.7
Q ss_pred ccccccCCCCChhHHHHHHHHHH----HcCCCcEEEEc
Q 003716 757 GVADKQAGKYSGGMKRRLSVAIS----LIGNPKVRLSL 790 (800)
Q Consensus 757 ~~~d~~~~~LSGG~KrRLsiA~A----Lig~P~vlLLD 790 (800)
++.+..+++||||||||+.+|.+ ++.+|+++++|
T Consensus 118 ~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllD 155 (213)
T cd03277 118 QLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVD 155 (213)
T ss_pred CccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEe
Confidence 35677899999999999887754 46899999999
No 409
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.86 E-value=3.2e-09 Score=114.34 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=27.1
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHh
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 679 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~Lt 679 (800)
-++++.+++.+| ..+|+|||||||||++.+|.
T Consensus 11 ~~~~~~i~~~~~-~~~i~G~nGsGKS~il~ai~ 42 (276)
T cd03241 11 LIEELELDFEEG-LTVLTGETGAGKSILLDALS 42 (276)
T ss_pred ceeeeEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 456778888776 89999999999999998875
No 410
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=3.3e-08 Score=106.15 Aligned_cols=141 Identities=23% Similarity=0.318 Sum_probs=79.6
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC----------------c-----------------------c
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT----------------S-----------------------G 687 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt----------------s-----------------------G 687 (800)
.+++.++++.+| +.+|+|||||||||++.+|.-+.... . |
T Consensus 11 ~~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~ 89 (270)
T cd03242 11 NYAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGG 89 (270)
T ss_pred CcceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCC
Confidence 456677777776 78899999999999998875443211 0 1
Q ss_pred --eEEECCeecCccHHHhh---cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhH---HHHHHHHHHHcCCC-CCcc
Q 003716 688 --TAYVQGLDIRTDMDRIY---TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL---TQAVEESLKSVNLF-HGGV 758 (800)
Q Consensus 688 --~I~i~G~~i~~~~~~~r---~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~---~~~v~~~L~~l~L~-~~~~ 758 (800)
.+++||..+.. ..++. ..|.+.|++..|.. .+..++..|.-.+-+....+. .++.++++++.+-. .+.+
T Consensus 90 ~~~~~ing~~~~~-l~~l~~~l~~i~~~~~~~~l~~-~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 167 (270)
T cd03242 90 GRKARLNGIKVRR-LSDLLGVLNAVWFAPEDLELVK-GSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRNALLKGPH 167 (270)
T ss_pred ceEEEECCeeccC-HHHHhCcCcEEEEecchhhhhc-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 22344444322 12222 23566666666652 355677666544322111111 11222222211100 0011
Q ss_pred c---------cccCCCCChhHHHHHHHHHHHc---------CCCcEEEEc
Q 003716 759 A---------DKQAGKYSGGMKRRLSVAISLI---------GNPKVRLSL 790 (800)
Q Consensus 759 ~---------d~~~~~LSGG~KrRLsiA~ALi---------g~P~vlLLD 790 (800)
+ ....+.+|+||||++++|++|+ ++|++++||
T Consensus 168 ~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlD 217 (270)
T cd03242 168 RDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLD 217 (270)
T ss_pred hhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEc
Confidence 1 1234568999999999999985 899999999
No 411
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.84 E-value=3.6e-09 Score=121.43 Aligned_cols=123 Identities=19% Similarity=0.285 Sum_probs=87.8
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHH
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 726 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L 726 (800)
++++.+..+++|++++|+||||+||||++..|++.+....|. ++|+++.++. ...++.|+|
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~----------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA----------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC----------------CeEEEEeCCc---cchhHHHHH
Confidence 445556667789999999999999999999999887665553 2478888875 447899999
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHH-HHHHHHHHcCCC-----cEEEEc
Q 003716 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR-RLSVAISLIGNP-----KVRLSL 790 (800)
Q Consensus 727 ~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~Kr-RLsiA~ALig~P-----~vlLLD 790 (800)
.+|+.+.|++........+..++..++.+ +....+.+...+++- .+.-..+++.++ .++.||
T Consensus 306 r~~AeilGVpv~~~~~~~Dl~~aL~~L~d--~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLd 373 (484)
T PRK06995 306 RIYGKILGVPVHAVKDAADLRLALSELRN--KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLN 373 (484)
T ss_pred HHHHHHhCCCeeccCCchhHHHHHHhccC--CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEe
Confidence 99999988875544445555666667753 456677775444432 234555666655 678888
No 412
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.83 E-value=1.4e-09 Score=123.33 Aligned_cols=67 Identities=12% Similarity=0.197 Sum_probs=53.2
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcc-eEEECCeecCccHHHhhcceEEecCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQGLDIRTDMDRIYTSMGVCPQE 713 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG-~I~i~G~~i~~~~~~~r~~IGycpQ~ 713 (800)
+.||++||+++++||+++|+||||||||||++ .|+..|++| +|.++|.++....+.....+-+++|+
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR~VFQ~ 86 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLDEIFDG 86 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999999999999999 788888888 79999999964221111111177775
No 413
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.78 E-value=1.1e-08 Score=109.87 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=54.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc--cHHHhhcceEEecCCCCCCCCCCHHHH
Q 003716 659 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRIYTSMGVCPQEDLLWETLTGREH 725 (800)
Q Consensus 659 Ei~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~--~~~~~r~~IGycpQ~~~L~~~LTv~E~ 725 (800)
.-++|+||||||||||+++|+|+++|++|++.++|+++.. +..++.+.++++||++ +...++|.|+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDG 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-cccccccccc
Confidence 5689999999999999999999999999999999999863 3455666788999976 3455555553
No 414
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.71 E-value=9.7e-09 Score=116.45 Aligned_cols=88 Identities=17% Similarity=0.265 Sum_probs=70.7
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcc---eEEECCeecCccH-------HHhhcceEEecCCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG---TAYVQGLDIRTDM-------DRIYTSMGVCPQED 714 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG---~I~i~G~~i~~~~-------~~~r~~IGycpQ~~ 714 (800)
..|++++ +.+.+||++||+|+||+|||||+++|+|..+++.+ .|-.+|.++..-. ...|..+++.||+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 5799999 99999999999999999999999999999998864 3333444443211 11245799999999
Q ss_pred CCCCCCCHHHHHHHHhhhc
Q 003716 715 LLWETLTGREHLLFYGRLK 733 (800)
Q Consensus 715 ~L~~~LTv~E~L~~~~~lk 733 (800)
..+..+++.|++...+...
T Consensus 222 s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 222 SPLMRIKATELCHAIATYY 240 (434)
T ss_pred ChhhhHHHHHHHHHHHHHh
Confidence 9999999999998877553
No 415
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.68 E-value=2e-08 Score=99.67 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=60.0
Q ss_pred eeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEE-ecCCCCCCCCCCHHHHH
Q 003716 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV-CPQEDLLWETLTGREHL 726 (800)
Q Consensus 648 l~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGy-cpQ~~~L~~~LTv~E~L 726 (800)
....++.+.++.+..|+||||+||||+++.+....-..+|.+... .++ +.|+ +|+...-+
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~---------~~g~~~~~~~~~~--------- 71 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV---------KAGCIVAAVSAEL--------- 71 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc---------cCCCcceeeEEEE---------
Confidence 344555666667999999999999999999877665555544331 110 1111 12211110
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcC----CCcEEEEc
Q 003716 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG----NPKVRLSL 790 (800)
Q Consensus 727 ~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig----~P~vlLLD 790 (800)
+. ...+||+||+||+++|++|.. +|++++||
T Consensus 72 --------------------------i~-------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllD 106 (162)
T cd03227 72 --------------------------IF-------TRLQLSGGEKELSALALILALASLKPRPLYILD 106 (162)
T ss_pred --------------------------eh-------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 10 012299999999999999986 88999999
No 416
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.66 E-value=4.3e-08 Score=99.06 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHHHHc----CCCcEEEEc
Q 003716 766 YSGGMKRRLSVAISLI----GNPKVRLSL 790 (800)
Q Consensus 766 LSGG~KrRLsiA~ALi----g~P~vlLLD 790 (800)
||||||||+++|++++ .+|+++++|
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilD 123 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLD 123 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 9999999999999996 799999999
No 417
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.63 E-value=5.2e-08 Score=100.00 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=27.9
Q ss_pred eeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCC
Q 003716 649 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 649 ~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl 681 (800)
-..++++.+|++++|+|||||||||++++|++.
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHH
Confidence 344556668999999999999999999999954
No 418
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.62 E-value=3.1e-08 Score=102.10 Aligned_cols=128 Identities=18% Similarity=0.116 Sum_probs=69.4
Q ss_pred EEEEEcCCCCcHHHHH-HHHhCCCCC-----------------CcceEEECCeecCccHHHhhcceEEecCCCCC--CCC
Q 003716 660 CFGMLGPNGAGKTTFI-SMMIGITRT-----------------TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLL--WET 719 (800)
Q Consensus 660 i~gLLGpNGAGKTTLl-k~LtGl~~p-----------------tsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L--~~~ 719 (800)
.++|+|+||+|||||+ +.++|..++ +.|.+.+++.|+....+......+|..+.+.+ .-+
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 90 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFD 90 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEE
Confidence 3789999999999999 689998764 46788888888753211111112333333221 111
Q ss_pred CCH---HHHHHHH-hhh----cCC-------C----chhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH
Q 003716 720 LTG---REHLLFY-GRL----KNL-------K----GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 720 LTv---~E~L~~~-~~l----kg~-------~----~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL 780 (800)
+|- .+++..+ ..+ .++ + ..+......+..+..++. +....+.+-.|-+++++.||+++
T Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 91 VTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQ---YYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCE---EEEEeCCCCCCHHHHHHHHHHHH
Confidence 221 1222111 000 111 1 111111222334444432 33333333344499999999999
Q ss_pred cCCCcEEEEc
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~vlLLD 790 (800)
+.+|++++||
T Consensus 168 ~~~p~~~~ld 177 (215)
T PTZ00132 168 TNDPNLVFVG 177 (215)
T ss_pred hhcccceecC
Confidence 9999999999
No 419
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.60 E-value=1e-07 Score=108.33 Aligned_cols=86 Identities=15% Similarity=0.251 Sum_probs=70.7
Q ss_pred CCcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEEC---CeecCc--
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ---GLDIRT-- 698 (800)
Q Consensus 624 ~~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~---G~~i~~-- 698 (800)
...+..+++++.|.. ...+++.++ .|.+||+++|+|+||+|||||+++|+|+.+|+.|.+.+. |.++..
T Consensus 137 p~~~~r~~v~~~l~T-----Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~ 210 (450)
T PRK06002 137 PPAMTRARVETGLRT-----GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFL 210 (450)
T ss_pred CCCeEeecceEEcCC-----CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHh
Confidence 457899999999974 257999996 999999999999999999999999999999999999885 455542
Q ss_pred --cHHHh-hcceEEecCCCC
Q 003716 699 --DMDRI-YTSMGVCPQEDL 715 (800)
Q Consensus 699 --~~~~~-r~~IGycpQ~~~ 715 (800)
..... ++.|++++|.+.
T Consensus 211 ~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 211 EDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHHHHhhCCeEEEEEcCCC
Confidence 11222 357999999864
No 420
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.58 E-value=5.7e-08 Score=98.54 Aligned_cols=84 Identities=14% Similarity=0.044 Sum_probs=62.7
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCC--CCCCCCCCHHH
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQE--DLLWETLTGRE 724 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~--~~L~~~LTv~E 724 (800)
..+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.+.+.+..-... ..+..+++..|. +...+..+..+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL--PHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC--CCCCEEEEEEecCCCCCCCccCHHH
Confidence 34455677899999999999999999999999999999999999977432211 112345665544 44567789999
Q ss_pred HHHHHhhh
Q 003716 725 HLLFYGRL 732 (800)
Q Consensus 725 ~L~~~~~l 732 (800)
.+....+.
T Consensus 92 ~l~~~lR~ 99 (186)
T cd01130 92 LLRSALRM 99 (186)
T ss_pred HHHHHhcc
Confidence 88765554
No 421
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.58 E-value=2.7e-07 Score=104.80 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=89.3
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r 704 (800)
+++..+.+++.|.. ...+++++ +.+.+||.++|+|+||+|||||+++|+|..+|+.|.|.+.|+..
T Consensus 129 ~~~~r~~i~~~l~T-----GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg-------- 194 (432)
T PRK06793 129 HAFEREEITDVFET-----GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG-------- 194 (432)
T ss_pred CchheechhhccCC-----CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc--------
Confidence 35667778888853 25688885 99999999999999999999999999999999998887666432
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHc---
Q 003716 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--- 781 (800)
Q Consensus 705 ~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALi--- 781 (800)
.+++|.+....... ++.+ ...=....+.|.|+|+|+..+.+.+
T Consensus 195 ---------------~ev~e~~~~~l~~~------------------gl~~-tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 195 ---------------REVKDFIRKELGEE------------------GMRK-SVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred ---------------ccHHHHHHHHhhhc------------------ccce-eEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 24455433211111 1211 1112446778999999999999888
Q ss_pred ----CCCcEEEEccCCc
Q 003716 782 ----GNPKVRLSLSSNR 794 (800)
Q Consensus 782 ----g~P~vlLLD~~~~ 794 (800)
|++-++++|.=-|
T Consensus 241 fr~~G~~VLlilDslTr 257 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHcCCcEEEEecchHH
Confidence 9999999994333
No 422
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.41 E-value=1.9e-07 Score=103.41 Aligned_cols=132 Identities=18% Similarity=0.239 Sum_probs=80.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhc-ceEEecCC---CCCCCCCCHHHHHHHHhh
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT-SMGVCPQE---DLLWETLTGREHLLFYGR 731 (800)
Q Consensus 656 ~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~-~IGycpQ~---~~L~~~LTv~E~L~~~~~ 731 (800)
.+||+.||+|.||-||||-+++++|-++|.-|.- .++-+-.+-....|. .+---+|. +.+-......+-..+...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~-~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRY-DNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCC-CCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 4799999999999999999999999999987743 111111110000000 00000111 111111111111122222
Q ss_pred hcCC-----CchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 732 LKNL-----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 732 lkg~-----~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.+|. ...+.++..+++++.++|. ...++.+.+||||+-||.++|.+.+.+.++...|
T Consensus 177 ~k~~v~~~l~~~~~r~~~~~~~~~~~L~--~~~~re~~~lsggelqrfaia~~~vq~advyMFD 238 (592)
T KOG0063|consen 177 VKGTVGSLLDRKDERDNKEEVCDQLDLN--NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFD 238 (592)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHh--hHHHhhhhhcccchhhhhhhhhhhhhhcceeEec
Confidence 2221 1122233566777888886 4789999999999999999999999999999999
No 423
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.37 E-value=7.5e-07 Score=101.51 Aligned_cols=121 Identities=17% Similarity=0.226 Sum_probs=82.3
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CcceEEE---CCeecCccHHH-h---hcceEEe-----c
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYV---QGLDIRTDMDR-I---YTSMGVC-----P 711 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~p-tsG~I~i---~G~~i~~~~~~-~---r~~IGyc-----p 711 (800)
..|++++ +.+.+||.++|+|+||+|||||+++|+|..++ +.|.+.+ .|.++..-.++ . ..+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 5699998 99999999999999999999999999999854 4466666 44555321111 1 1234555 8
Q ss_pred CCCC--CCCCCCHHHHHHHHhhhcCCC---chhHHHHHHHHHHHcCCC---CCccccccCCCCC
Q 003716 712 QEDL--LWETLTGREHLLFYGRLKNLK---GPALTQAVEESLKSVNLF---HGGVADKQAGKYS 767 (800)
Q Consensus 712 Q~~~--L~~~LTv~E~L~~~~~lkg~~---~~~~~~~v~~~L~~l~L~---~~~~~d~~~~~LS 767 (800)
|.+. +.+.+ +...+.-+.+.+|.. ..+...++.++++.++|. .......+++.+|
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS 293 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS 293 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence 8753 34444 444454444445533 256678899999999994 1135677777776
No 424
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.35 E-value=3.2e-07 Score=93.60 Aligned_cols=105 Identities=12% Similarity=0.072 Sum_probs=64.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 739 (800)
Q Consensus 660 i~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~ 739 (800)
++||.|++||||||+.++|.+++ ..|.+.+-+. ++. +..++..+.........+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~------------------D~~-~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQ------------------DSY-YKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEe------------------ccc-ccccccccHHHhccCCCCCCCcc
Confidence 57999999999999999999988 3344433333 221 11122222222111112222222
Q ss_pred HHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 740 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 740 ~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
..+...+.++.+... +..+.+..++|.|++++..+ .+.+++++++|
T Consensus 60 ~~~~~~~~l~~l~~~--~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~e 105 (198)
T cd02023 60 DFDLLISHLQDLKNG--KSVEIPVYDFKTHSRLKETV---TVYPADVIILE 105 (198)
T ss_pred cHHHHHHHHHHHHCC--CCEeccccccccCcccCCce---ecCCCCEEEEe
Confidence 233445566666554 35678888999999876655 57889999999
No 425
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.33 E-value=4.1e-07 Score=91.82 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=51.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHH
Q 003716 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF 728 (800)
Q Consensus 657 ~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~ 728 (800)
+||+++|+|+|||||||++++|+|++.+ +.++|.++.......+...|+.+|+...++.+++.++..+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999999887 6889988854322222346777777666666666666653
No 426
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.33 E-value=2.3e-06 Score=110.50 Aligned_cols=137 Identities=17% Similarity=0.119 Sum_probs=93.7
Q ss_pred eeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHh----------CCCCCCcceEEECCeecCc-----------cHHHhh
Q 003716 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI----------GITRTTSGTAYVQGLDIRT-----------DMDRIY 704 (800)
Q Consensus 646 ~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~Lt----------Gl~~ptsG~I~i~G~~i~~-----------~~~~~r 704 (800)
.=|+|++.+|+-|..+++.|.+|||||||++=.. |.. .-+--|.|+-.+|.. -.+++|
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~-~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR 1582 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPS-VFSEIIFLDSHPQISSQRSDISTYFDIAPSLR 1582 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhccccc-ccCcEEEEeCCCCCCCCCCchhhhhhhHHHHH
Confidence 3489999999999999999999999999996433 322 223347777666521 112222
Q ss_pred cc----------------------eEEe----------------cCCC-----------------CCC--------CCCC
Q 003716 705 TS----------------------MGVC----------------PQED-----------------LLW--------ETLT 721 (800)
Q Consensus 705 ~~----------------------IGyc----------------pQ~~-----------------~L~--------~~LT 721 (800)
+- =|-| |.-. .-| -+||
T Consensus 1583 ~lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mt 1662 (1809)
T PRK00635 1583 NFYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTP 1662 (1809)
T ss_pred HHHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCC
Confidence 11 1222 2110 001 2578
Q ss_pred HHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCC---CcEEEEc
Q 003716 722 GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN---PKVRLSL 790 (800)
Q Consensus 722 v~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~---P~vlLLD 790 (800)
|.|-+.||... .. -.+.-+.|+.+||.. -.+.++..+|||||.||+-+|.-|..+ +.+++||
T Consensus 1663 v~ea~~~F~~~-----~~-i~~~L~~L~~vGLgY-l~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilD 1727 (1809)
T PRK00635 1663 IEEVAETFPFL-----KK-IQKPLQALIDNGLGY-LPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLD 1727 (1809)
T ss_pred HHHHHHHhhcc-----HH-HHHHHHHHHHcCCCe-eeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 88888887432 11 234467888999974 356899999999999999999999865 7899999
No 427
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.29 E-value=9.5e-07 Score=92.01 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=50.4
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHH
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E 724 (800)
+.+.+|++++..+ ++++|+||||+||||++|++++..-.. + .|..+.. .+..++++.| ++..+++.|
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~--~---~g~~vp~----~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA--Q---IGSFVPA----SKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh--c---cCCeecc----ccceecceee---EeccCCchh
Confidence 4689999999987 999999999999999999998754221 1 1222211 1245677654 567788888
Q ss_pred HHHH
Q 003716 725 HLLF 728 (800)
Q Consensus 725 ~L~~ 728 (800)
++..
T Consensus 85 ~ls~ 88 (216)
T cd03284 85 DLAG 88 (216)
T ss_pred hhcc
Confidence 7753
No 428
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.27 E-value=5.5e-07 Score=109.59 Aligned_cols=94 Identities=18% Similarity=0.178 Sum_probs=62.3
Q ss_pred eeEEEEcCC-cEEEEEcCCCCcHHHHHHHHhCC-CCCCcceEEECCeecCccHHHhhcceEEecCCCC-CCCCCCHHHHH
Q 003716 650 GLSLALPSG-ECFGMLGPNGAGKTTFISMMIGI-TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL-LWETLTGREHL 726 (800)
Q Consensus 650 ~lsl~I~~G-Ei~gLLGpNGAGKTTLlk~LtGl-~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~-L~~~LTv~E~L 726 (800)
.+++.+.++ ++++|.||||+||||++|+|+|. +.+..| .++|.+.. .++ ..+.+
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G--------------------~~Vpa~~~~~~~---~~d~i 369 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG--------------------IPIPANEHSEIP---YFEEI 369 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC--------------------CCccCCcccccc---chhhe
Confidence 478888877 99999999999999999999986 233222 14444431 111 11111
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 727 ~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+..+ +.. +......+++|+||+|+..+++++ .+|+++|||
T Consensus 370 --~~~i-------------------~~~--~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlD 409 (771)
T TIGR01069 370 --FADI-------------------GDE--QSIEQNLSTFSGHMKNISAILSKT-TENSLVLFD 409 (771)
T ss_pred --eeec-------------------ChH--hHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEec
Confidence 1111 000 122344678999999999998876 899999999
No 429
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.24 E-value=1.2e-06 Score=91.90 Aligned_cols=73 Identities=21% Similarity=0.385 Sum_probs=55.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCcce----EEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhh
Q 003716 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGT----AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 732 (800)
Q Consensus 657 ~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~----I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~l 732 (800)
+..++||.|+||||||||.+.|++++++++|. +.+++.... ...++..|++++.+. .+.+++.+.+.++..+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~---~~~~~~~g~~~~~~~-~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLD---NAVLDAHGLRPRKGA-PETFDVAGLAALLRRL 107 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCC---HHHHHhcccccccCC-CCCCCHHHHHHHHHHH
Confidence 45799999999999999999999999999998 444443322 223445788887543 4677888888887776
Q ss_pred c
Q 003716 733 K 733 (800)
Q Consensus 733 k 733 (800)
+
T Consensus 108 ~ 108 (229)
T PRK09270 108 R 108 (229)
T ss_pred H
Confidence 5
No 430
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.23 E-value=5.7e-07 Score=95.70 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=71.0
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceE--EEC--CeecCccHHHhhcc---eEEecCCCCCCCCCCHHHH
Q 003716 653 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA--YVQ--GLDIRTDMDRIYTS---MGVCPQEDLLWETLTGREH 725 (800)
Q Consensus 653 l~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I--~i~--G~~i~~~~~~~r~~---IGycpQ~~~L~~~LTv~E~ 725 (800)
+.+.+||..+|+|++|+||||++++|.+......+++ ++. |.. ..+..++.+. +-++-+.+. ...++
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er-~~ev~el~~~I~~~~v~~~~~~-----~~~~~ 84 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER-PEEVTDMQRSVKGEVIASTFDE-----PPERH 84 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC-CccHHHHHHHhccEEEEecCCC-----CHHHH
Confidence 5788999999999999999999999999988764433 222 111 1123333332 233334332 12222
Q ss_pred HHH-H------h--hhcCCC----chhHHHHHHHHHHHcCCCCCccccccCCCCChhH--------HHHHHHHHHHcCCC
Q 003716 726 LLF-Y------G--RLKNLK----GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM--------KRRLSVAISLIGNP 784 (800)
Q Consensus 726 L~~-~------~--~lkg~~----~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~--------KrRLsiA~ALig~P 784 (800)
... + . +-.|.. -+++. +..+..+.+.+ .....+|||+ +||+++|+++..++
T Consensus 85 ~~~~~~~~~~a~~~~~~G~~vll~iDei~-r~a~a~~ev~~-------~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~g 156 (249)
T cd01128 85 VQVAEMVLEKAKRLVEHGKDVVILLDSIT-RLARAYNTVVP-------PSGKILSGGVDANALHKPKRFFGAARNIEEGG 156 (249)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHH-Hhhhhhhhccc-------cCCCCCCCCcChhhhhhhHHHHHHhcCCCCCC
Confidence 211 0 0 111211 01221 22223333333 2334579999 99999999998999
Q ss_pred cEEEE
Q 003716 785 KVRLS 789 (800)
Q Consensus 785 ~vlLL 789 (800)
+|.+|
T Consensus 157 sIt~l 161 (249)
T cd01128 157 SLTII 161 (249)
T ss_pred ceEEe
Confidence 99876
No 431
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.21 E-value=1.8e-06 Score=98.64 Aligned_cols=70 Identities=23% Similarity=0.325 Sum_probs=58.0
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeec---Cc------cHHHhhcceEEecCCCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI---RT------DMDRIYTSMGVCPQEDL 715 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i---~~------~~~~~r~~IGycpQ~~~ 715 (800)
..+++++ +.+.+||+++|+|+||+|||||+++|+|..+|+.|.|.+.|++- .. ....+++.++++.+.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 4689999 99999999999999999999999999999999999999965443 21 12235678999987543
No 432
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.21 E-value=1.1e-06 Score=95.29 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=56.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC--CCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhc
Q 003716 659 ECFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 733 (800)
Q Consensus 659 Ei~gLLGpNGAGKTTLlk~LtGl~~--ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lk 733 (800)
.++||.|+||||||||.++|.+++. |++|+|.+-+.|--......++..|+. |.....+.+++.+.+.+...++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 4899999999999999999999998 788998876655432222334456654 6666778889998888877765
No 433
>PRK00064 recF recombination protein F; Reviewed
Probab=98.15 E-value=2e-05 Score=88.32 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=30.0
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~ 682 (800)
-++++++++.+| +.+|+|+|||||||++.+|..+.
T Consensus 13 ~~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~l~ 47 (361)
T PRK00064 13 NYEELDLELSPG-VNVLVGENGQGKTNLLEAIYLLA 47 (361)
T ss_pred cccceEEEecCC-eEEEECCCCCCHHHHHHHHHHhC
Confidence 456788898887 99999999999999999987544
No 434
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.13 E-value=1.3e-05 Score=95.31 Aligned_cols=65 Identities=22% Similarity=0.214 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC---cEEEEc
Q 003716 719 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---KVRLSL 790 (800)
Q Consensus 719 ~LTv~E~L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P---~vlLLD 790 (800)
+|||.|-..||..... + .+.-+.|..+||.- -.+.+++.+|||||.||+-+|.-|.... .+++||
T Consensus 783 ~MTveEA~~FF~~~p~-----I-~rkLqtL~dVGLgY-i~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLD 850 (935)
T COG0178 783 DMTVEEALEFFEAIPK-----I-ARKLQTLVDVGLGY-IKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILD 850 (935)
T ss_pred hccHHHHHHHHhcchH-----H-HHHHHHHHHcCcce-EecCCccccccchHHHHHHHHHHHhhccCCCeEEEeC
Confidence 5888998888865421 2 23345677799963 3568999999999999999999999877 999999
No 435
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.06 E-value=9.2e-06 Score=84.48 Aligned_cols=56 Identities=14% Similarity=0.241 Sum_probs=36.9
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCcceEEECCeecCccHHHhhcceEEecCC
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQE 713 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtG--l~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~ 713 (800)
+=+|++++=..+.++.|.||||+||||++|.+.. .+ +..|...... .-.++|..|.
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~----------~~~~~~~d~i 75 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD----------SATIGLVDKI 75 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC----------CcEEeeeeee
Confidence 4456665422237899999999999999999984 33 4455543321 1346777775
No 436
>PRK01889 GTPase RsgA; Reviewed
Probab=98.05 E-value=7.4e-06 Score=91.62 Aligned_cols=78 Identities=23% Similarity=0.385 Sum_probs=61.0
Q ss_pred eeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHH
Q 003716 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 727 (800)
Q Consensus 648 l~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~ 727 (800)
++.+.-.+++|++++++|+||+|||||++.|+|...++.|+|.+++..... ...++.+++++|...+++. .+..++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~--tt~~~~l~~l~~~~~l~Dt-pG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH--TTTHRELHPLPSGGLLIDT-PGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc--hhhhccEEEecCCCeecCC-Cchhhhc
Confidence 555666678999999999999999999999999999999999998754322 1235679999998777764 4554444
Q ss_pred H
Q 003716 728 F 728 (800)
Q Consensus 728 ~ 728 (800)
+
T Consensus 262 l 262 (356)
T PRK01889 262 L 262 (356)
T ss_pred c
Confidence 3
No 437
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.04 E-value=6.4e-06 Score=83.46 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=51.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHHhhcceEEecCCCC-CCCCCCHHHHHHHHhhhcCC
Q 003716 658 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNL 735 (800)
Q Consensus 658 GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~~r~~IGycpQ~~~-L~~~LTv~E~L~~~~~lkg~ 735 (800)
|++++|+|||||||||++++|++...+ .+.+.+..+... ....+..+++.+|+.. ..+.-...|.-.+++..+|.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~ 78 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGV 78 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence 789999999999999999999999876 577877777542 2234467888888732 11221223333445555666
Q ss_pred C
Q 003716 736 K 736 (800)
Q Consensus 736 ~ 736 (800)
+
T Consensus 79 ~ 79 (186)
T PRK10078 79 G 79 (186)
T ss_pred c
Confidence 5
No 438
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.04 E-value=3.2e-06 Score=91.80 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=62.7
Q ss_pred eeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEE---CCeecCccHHHhhc-ceEEecCCCCC---C-CC
Q 003716 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRIYT-SMGVCPQEDLL---W-ET 719 (800)
Q Consensus 648 l~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i---~G~~i~~~~~~~r~-~IGycpQ~~~L---~-~~ 719 (800)
++.+...+. +++++++|+||+|||||+|.|.|...++.|++.. .|...+.....++. ..|++.+.+.+ . ..
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~ 230 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLH 230 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCcc
Confidence 344444454 5899999999999999999999999999999976 45544443333332 37899998877 3 46
Q ss_pred CCHHHHHHHHhhhc
Q 003716 720 LTGREHLLFYGRLK 733 (800)
Q Consensus 720 LTv~E~L~~~~~lk 733 (800)
++..|....|..++
T Consensus 231 ~~~~~~~~~f~~~~ 244 (287)
T cd01854 231 IDPEELAHYFPEFR 244 (287)
T ss_pred CCHHHHHHHhHHHH
Confidence 88888888766543
No 439
>PRK08149 ATP synthase SpaL; Validated
Probab=98.04 E-value=7.1e-06 Score=93.29 Aligned_cols=68 Identities=21% Similarity=0.370 Sum_probs=57.3
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---ceEEECCeecCccHHHh-----hcceEEecCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---GTAYVQGLDIRTDMDRI-----YTSMGVCPQE 713 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts---G~I~i~G~~i~~~~~~~-----r~~IGycpQ~ 713 (800)
..+++++ +.+.+||+++|+|+||+|||||+++|++...++. |.|..+|.++..-.++. ++++++++..
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 5799999 9999999999999999999999999999999987 99999999886422222 3567777654
No 440
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=4.1e-06 Score=95.11 Aligned_cols=95 Identities=22% Similarity=0.390 Sum_probs=56.1
Q ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcC
Q 003716 655 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN 734 (800)
Q Consensus 655 I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg 734 (800)
+++|++++|+||||+|||||++.|+|...-..| ...+|++..+.. .....|.+..++++.|
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~----------------~~~v~~i~~d~~---rigalEQL~~~a~ilG 248 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHG----------------ADKVALLTTDSY---RIGGHEQLRIYGKLLG 248 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC----------------CCeEEEEecCCc---chhHHHHHHHHHHHcC
Confidence 368999999999999999999999985311000 012344443332 1356788888998888
Q ss_pred CCchhHHHH--HHHHHHHcCCCCCccccccCCCCChhHHHHH
Q 003716 735 LKGPALTQA--VEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 735 ~~~~~~~~~--v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRL 774 (800)
++....... ....+. ++. +.....+.+ .|+.||.
T Consensus 249 vp~~~v~~~~dl~~al~--~l~--~~d~VLIDT--aGrsqrd 284 (420)
T PRK14721 249 VSVRSIKDIADLQLMLH--ELR--GKHMVLIDT--VGMSQRD 284 (420)
T ss_pred CceecCCCHHHHHHHHH--Hhc--CCCEEEecC--CCCCcch
Confidence 764322222 222333 333 233444554 4777654
No 441
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.00 E-value=2.3e-06 Score=88.17 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=27.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGITRT 684 (800)
Q Consensus 656 ~~GEi~gLLGpNGAGKTTLlk~LtGl~~p 684 (800)
++|+++||.|+||||||||.+.|+|++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
No 442
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.95 E-value=7.3e-06 Score=90.30 Aligned_cols=73 Identities=15% Similarity=0.045 Sum_probs=57.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-----H--HHhhcceEEecCCCCCCCCCCHHHHHHH
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----M--DRIYTSMGVCPQEDLLWETLTGREHLLF 728 (800)
Q Consensus 656 ~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-----~--~~~r~~IGycpQ~~~L~~~LTv~E~L~~ 728 (800)
++|++++++||||+||||++..|++.+.+..|+|.+-+.|.... . ...+..+++++|.....+..++.+.+..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999999889999988887421 1 1224568999997666665667777654
No 443
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.95 E-value=9.9e-06 Score=92.26 Aligned_cols=65 Identities=17% Similarity=0.306 Sum_probs=56.7
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCee
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~ 695 (800)
..+..+.+++.+.. ...+++++ +.+.+||.++|+|+||+|||||+++|+|...++.|.+.+.|..
T Consensus 128 ~~~~r~~v~~~l~t-----Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 128 PAMVRQPITQPLMT-----GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred CceeccCHhheeCC-----Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 35777788888853 36799999 9999999999999999999999999999999999988776654
No 444
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.95 E-value=1.4e-05 Score=88.04 Aligned_cols=50 Identities=26% Similarity=0.450 Sum_probs=46.0
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCee
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~ 695 (800)
..+++++ +.+.+||+++|+|+||+|||||+++|+|...|+.|.+..-|++
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 5799999 9999999999999999999999999999999999888776643
No 445
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=97.94 E-value=2.6e-06 Score=88.20 Aligned_cols=42 Identities=24% Similarity=0.214 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHH----cCCCcEEEEc
Q 003716 741 TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL----IGNPKVRLSL 790 (800)
Q Consensus 741 ~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~AL----ig~P~vlLLD 790 (800)
.+.+.+.++.+++.. ..+|||||..++||.-| .++.++++||
T Consensus 120 ~~~~~~~l~~~~i~~--------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilD 165 (220)
T PF02463_consen 120 LKDLEELLPEVGISP--------EFLSGGEKSLVALALLLALQRYKPSPFLILD 165 (220)
T ss_dssp HHHHHHHHHCTTTTT--------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEE
T ss_pred ccccccccccccccc--------ccccccccccccccccccccccccccccccc
Confidence 356677777777752 19999999999998654 4688999999
No 446
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.91 E-value=4.9e-06 Score=84.41 Aligned_cols=32 Identities=9% Similarity=-0.006 Sum_probs=24.2
Q ss_pred cccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 758 VADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 758 ~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
..++..+++|+|++|...++ ..+.+|+++|+|
T Consensus 54 ~~~~~~s~fs~~~~~l~~~l-~~~~~~~llllD 85 (185)
T smart00534 54 SLAQGLSTFMVEMKETANIL-KNATENSLVLLD 85 (185)
T ss_pred chhccccHHHHHHHHHHHHH-HhCCCCeEEEEe
Confidence 56778889999998743333 335699999999
No 447
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.88 E-value=1.1e-05 Score=93.68 Aligned_cols=61 Identities=23% Similarity=0.404 Sum_probs=55.3
Q ss_pred EeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeec
Q 003716 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 696 (800)
Q Consensus 630 ~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i 696 (800)
+++++.|+. +.+++++++.+..|+.++|+|+||+||||+++.|.|+++|.+|++.+++..|
T Consensus 188 ~d~~~v~Gq------~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 188 HDLSDVIGQ------EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred cCeEEEECc------HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 478888863 4699999999999999999999999999999999999999999998887665
No 448
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.85 E-value=1.7e-05 Score=90.52 Aligned_cols=69 Identities=23% Similarity=0.388 Sum_probs=56.4
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---ceEEECCeecCccHHHh----hcceEEecCCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---GTAYVQGLDIRTDMDRI----YTSMGVCPQED 714 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts---G~I~i~G~~i~~~~~~~----r~~IGycpQ~~ 714 (800)
..|++.+ +.+.+||+++|+|+||+|||||+++|+|+.+|+. |.|.++|.++..-.+.. .+..++++|..
T Consensus 163 iraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ 238 (455)
T PRK07960 163 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAP 238 (455)
T ss_pred ceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEEC
Confidence 4577777 9999999999999999999999999999999986 99999999985422221 24577787764
No 449
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.82 E-value=7e-06 Score=91.83 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=67.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhCCCCC--Cc-ceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhh
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGITRT--TS-GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 732 (800)
Q Consensus 656 ~~GEi~gLLGpNGAGKTTLlk~LtGl~~p--ts-G~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~l 732 (800)
++|..+.+.||+|||||||++.|.+.+.+ .. +.|...+.++.-..+..++..+.+.|...--...+-.+-+.- .+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~--aL 209 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRN--AL 209 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHH--Hh
Confidence 58899999999999999999999998843 33 456555544433333344456788887532112233333332 12
Q ss_pred cCCC------chhHHHHHHHHHHHcCCCC-----------CccccccCCCCChhHHHHH
Q 003716 733 KNLK------GPALTQAVEESLKSVNLFH-----------GGVADKQAGKYSGGMKRRL 774 (800)
Q Consensus 733 kg~~------~~~~~~~v~~~L~~l~L~~-----------~~~~d~~~~~LSGG~KrRL 774 (800)
+.-+ +-...+.++.+++...-.| .+..++....+|+|+|--+
T Consensus 210 R~~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i~Rl~~~~~~~~~~~~ 268 (358)
T TIGR02524 210 RRKPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVAETIRRLVGSFPAEERIGR 268 (358)
T ss_pred ccCCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHHHHHHHhCCccchhhH
Confidence 2111 1222344555666532221 0234556677999887543
No 450
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.80 E-value=3.5e-05 Score=88.01 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=57.5
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc---cHHHh----hcceEEecCCCCCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDRI----YTSMGVCPQEDLLW 717 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~---~~~~~----r~~IGycpQ~~~L~ 717 (800)
..+++++ +.+.+||.++|+|+||+|||||+++|+|...|+.|.+...|.+-+. -.++. ....+++.|.....
T Consensus 133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~ 211 (422)
T TIGR02546 133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDR 211 (422)
T ss_pred ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccC
Confidence 5699999 9999999999999999999999999999999999998885543321 11111 12356777776665
Q ss_pred CCC
Q 003716 718 ETL 720 (800)
Q Consensus 718 ~~L 720 (800)
+.+
T Consensus 212 p~~ 214 (422)
T TIGR02546 212 PSL 214 (422)
T ss_pred CHH
Confidence 554
No 451
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.79 E-value=8e-05 Score=78.39 Aligned_cols=52 Identities=23% Similarity=0.432 Sum_probs=41.6
Q ss_pred EEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHH-HHHHhCCCCCCcceEEECC
Q 003716 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTF-ISMMIGITRTTSGTAYVQG 693 (800)
Q Consensus 627 i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTL-lk~LtGl~~ptsG~I~i~G 693 (800)
+.+++|.+.+++ .+++|+++.|.|+|||||||+ ++++.+..++....+++..
T Consensus 8 ~~~~~ld~~l~g---------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 8 LSRDELHKRLGG---------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred EEEeeeehhhCC---------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 567778877753 278999999999999999999 7999998776555566553
No 452
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=1.9e-05 Score=88.58 Aligned_cols=73 Identities=19% Similarity=0.401 Sum_probs=55.0
Q ss_pred eeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHH
Q 003716 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREH 725 (800)
Q Consensus 646 ~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~ 725 (800)
.++++.++.+++|++++|+||||+|||||+..|++......| +++++++..+.. .....|+
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G----------------~~~V~lit~D~~---R~ga~Eq 185 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFG----------------ASKVALLTTDSY---RIGGHEQ 185 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC----------------CCeEEEEecccc---cccHHHH
Confidence 467788888999999999999999999999999885422111 134666665443 2367899
Q ss_pred HHHHhhhcCCCc
Q 003716 726 LLFYGRLKNLKG 737 (800)
Q Consensus 726 L~~~~~lkg~~~ 737 (800)
|..|+++.|++-
T Consensus 186 L~~~a~~~gv~~ 197 (374)
T PRK14722 186 LRIFGKILGVPV 197 (374)
T ss_pred HHHHHHHcCCce
Confidence 999998888753
No 453
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.76 E-value=0.00016 Score=66.73 Aligned_cols=40 Identities=35% Similarity=0.620 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-ceEEECCeec
Q 003716 657 SGECFGMLGPNGAGKTTFISMMIGITRTTS-GTAYVQGLDI 696 (800)
Q Consensus 657 ~GEi~gLLGpNGAGKTTLlk~LtGl~~pts-G~I~i~G~~i 696 (800)
+++.+.|.||+|+||||+++.|+..+.... +-++++....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 467899999999999999999999987765 5666665443
No 454
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.76 E-value=3.1e-05 Score=88.51 Aligned_cols=51 Identities=27% Similarity=0.446 Sum_probs=47.5
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeec
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 696 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i 696 (800)
..+++++ +.+.+||+++|+|+||+|||||+++|+|...++.|.+...|+.-
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~ 201 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERG 201 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccCh
Confidence 5699999 99999999999999999999999999999999999998888543
No 455
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.75 E-value=3.1e-05 Score=88.08 Aligned_cols=52 Identities=25% Similarity=0.329 Sum_probs=47.3
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 697 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~ 697 (800)
..+++ .++.+.+||.++|+|+||+|||||+++|+|..+|+.|.+.+.|+.-+
T Consensus 128 i~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ 179 (418)
T TIGR03498 128 VRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGR 179 (418)
T ss_pred cEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeech
Confidence 45776 69999999999999999999999999999999999999998887654
No 456
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=9e-05 Score=89.44 Aligned_cols=71 Identities=21% Similarity=0.403 Sum_probs=49.1
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHH
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 726 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L 726 (800)
++++.++.+++|++++++||||+||||++..|++.+....|. ++|+++..+. ......|.+
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~----------------kkV~lit~Dt---~RigA~eQL 234 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGA----------------DQLALLTTDS---FRIGALEQL 234 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCC----------------CeEEEecCcc---cchHHHHHH
Confidence 455666777889999999999999999999999987655541 1233333332 112346777
Q ss_pred HHHhhhcCCC
Q 003716 727 LFYGRLKNLK 736 (800)
Q Consensus 727 ~~~~~lkg~~ 736 (800)
..|+.+.|++
T Consensus 235 ~~~a~~~gvp 244 (767)
T PRK14723 235 RIYGRILGVP 244 (767)
T ss_pred HHHHHhCCCC
Confidence 7777766654
No 457
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.73 E-value=3.8e-05 Score=87.37 Aligned_cols=69 Identities=23% Similarity=0.364 Sum_probs=56.2
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccH---------HHhhcceEEecCCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM---------DRIYTSMGVCPQED 714 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~---------~~~r~~IGycpQ~~ 714 (800)
..+++++ +.+.+||+++|+|+||+|||||+++|++..+++.|.+...|+..++-. +..++.+-++.+.|
T Consensus 125 i~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd 202 (413)
T TIGR03497 125 IKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSD 202 (413)
T ss_pred ceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCC
Confidence 5699999 999999999999999999999999999999999999988887653211 11234566777765
No 458
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.72 E-value=2.5e-05 Score=81.71 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC--CcceEEE
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITRT--TSGTAYV 691 (800)
Q Consensus 660 i~gLLGpNGAGKTTLlk~LtGl~~p--tsG~I~i 691 (800)
++||.|+||||||||.+.|.+.+.+ .+|+|.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v 34 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence 5899999999999999999999875 4455544
No 459
>PRK00098 GTPase RsgA; Reviewed
Probab=97.68 E-value=5e-05 Score=82.99 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=55.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEE---CCeecCccHHHh-hcceEEecCCCCCC----CCCCHHHHHHH
Q 003716 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRI-YTSMGVCPQEDLLW----ETLTGREHLLF 728 (800)
Q Consensus 657 ~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i---~G~~i~~~~~~~-r~~IGycpQ~~~L~----~~LTv~E~L~~ 728 (800)
+|++++++|+||+|||||+|.|.|...+..|+|.. .|+..++..... ....|++.+.+.+. ..++..|....
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 242 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHY 242 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHH
Confidence 58999999999999999999999999999999987 455444322211 12467888887776 45777766555
Q ss_pred Hhh
Q 003716 729 YGR 731 (800)
Q Consensus 729 ~~~ 731 (800)
|..
T Consensus 243 f~~ 245 (298)
T PRK00098 243 FPE 245 (298)
T ss_pred HHH
Confidence 543
No 460
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.68 E-value=4.1e-05 Score=87.74 Aligned_cols=51 Identities=24% Similarity=0.412 Sum_probs=46.1
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeec
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 696 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i 696 (800)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++.|.+...|+.-
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~ 201 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERG 201 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecc
Confidence 5799999 99999999999999999999999999999999998777765543
No 461
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.66 E-value=3.8e-05 Score=89.74 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=52.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHH
Q 003716 659 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF 728 (800)
Q Consensus 659 Ei~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~ 728 (800)
-++||.|||||||||+.++|.|.+ |..|.|.++|+.-. .+.+++.+|++.+++..++.|||.-
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~~------~~~i~~nfD~P~a~D~d~L~enL~~ 128 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYNDS------SRIIDGNFDDPRLTDYDTLLDNIHD 128 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceecc------hhhhCccCCChhhcchhHHHHHHHH
Confidence 389999999999999999999997 57899999998521 1236788999888888889998864
No 462
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.66 E-value=5.6e-05 Score=85.93 Aligned_cols=64 Identities=23% Similarity=0.344 Sum_probs=52.7
Q ss_pred cEEEEeEEEEcCCCCCCCcceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCee
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695 (800)
Q Consensus 626 ~i~i~nL~k~Y~~~~~~~~~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~ 695 (800)
++.-+.+++.|.. ...+++.+ +.+.+||+++|+|+||+|||||+++|++..+|+.|.+...|+.
T Consensus 111 ~~~R~~~~~~~~t-----Gi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer 174 (411)
T TIGR03496 111 PLKRAPIDEPLDV-----GVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER 174 (411)
T ss_pred HHhccCcceEeee-----eEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence 3444556666653 25799999 9999999999999999999999999999999998877666654
No 463
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.66 E-value=5.3e-05 Score=63.61 Aligned_cols=38 Identities=24% Similarity=0.516 Sum_probs=30.2
Q ss_pred eeeeEEEEcC-CcEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 003716 648 VNGLSLALPS-GECFGMLGPNGAGKTTFISMMIGITRTT 685 (800)
Q Consensus 648 l~~lsl~I~~-GEi~gLLGpNGAGKTTLlk~LtGl~~pt 685 (800)
.++-.+++.+ |+++.|.|+|||||||++.+|.=.+-+.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4456677775 6799999999999999999887666554
No 464
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.66 E-value=3.5e-05 Score=78.81 Aligned_cols=39 Identities=31% Similarity=0.573 Sum_probs=34.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhCCCC------------CCcceEEECCeec
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGITR------------TTSGTAYVQGLDI 696 (800)
Q Consensus 656 ~~GEi~gLLGpNGAGKTTLlk~LtGl~~------------ptsG~I~i~G~~i 696 (800)
++|++++|+||+|||||||+++|.+..+ |..|+ ++|.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~ 53 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDY 53 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCee
Confidence 5899999999999999999999999985 77788 577775
No 465
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.65 E-value=4.1e-05 Score=87.56 Aligned_cols=52 Identities=27% Similarity=0.539 Sum_probs=44.2
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---ceEEECCeecC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---GTAYVQGLDIR 697 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts---G~I~i~G~~i~ 697 (800)
..|++++ +.+.+||+++|+|+||+|||||+++|+|...|+- |.|-..|.+++
T Consensus 156 i~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev~ 210 (451)
T PRK05688 156 IRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVK 210 (451)
T ss_pred eeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhHH
Confidence 6799999 9999999999999999999999999999988863 55555555543
No 466
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.65 E-value=3.3e-05 Score=80.96 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=41.9
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhC-CCCCCcceEEE
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG-ITRTTSGTAYV 691 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtG-l~~ptsG~I~i 691 (800)
+.+.+|+++++.+|++++|.||||+||||++++++| .+.+..|....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 468999999999999999999999999999999999 66777886543
No 467
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.63 E-value=8.7e-05 Score=92.13 Aligned_cols=69 Identities=23% Similarity=0.294 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHhhhcCCCc----------hhHHHHHHHHHHHcCCCCCcc-ccccCCCCChhHHHHHHHHHHHcCCC--
Q 003716 718 ETLTGREHLLFYGRLKNLKG----------PALTQAVEESLKSVNLFHGGV-ADKQAGKYSGGMKRRLSVAISLIGNP-- 784 (800)
Q Consensus 718 ~~LTv~E~L~~~~~lkg~~~----------~~~~~~v~~~L~~l~L~~~~~-~d~~~~~LSGG~KrRLsiA~ALig~P-- 784 (800)
-.+||.|.+.|...+ +.+. +++.++++ .|+.+||.+ . +|+++.+|||||||||.||+||..+|
T Consensus 435 ~~~~v~~~~~~~~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~--l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~ 510 (943)
T PRK00349 435 SELSIGEALEFFENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDY--LTLSRSAGTLSGGEAQRIRLATQIGSGLTG 510 (943)
T ss_pred hcCcHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCC--CCCCCchhhCCHHHHHHHHHHHHHhhCCCC
Confidence 457888888886554 2222 13344454 688899963 4 79999999999999999999999997
Q ss_pred cEEEEc
Q 003716 785 KVRLSL 790 (800)
Q Consensus 785 ~vlLLD 790 (800)
++++||
T Consensus 511 ~llILD 516 (943)
T PRK00349 511 VLYVLD 516 (943)
T ss_pred cEEEec
Confidence 999999
No 468
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.62 E-value=5e-05 Score=86.64 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=48.3
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCc
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 698 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~ 698 (800)
..+++++ +.+.+||+++|+|+||+|||||+++|++...++.+.+...|+.-+.
T Consensus 145 i~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergre 197 (434)
T PRK08472 145 VKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGRE 197 (434)
T ss_pred hHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchh
Confidence 4589999 9999999999999999999999999999999999999888877643
No 469
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.62 E-value=0.00011 Score=91.21 Aligned_cols=70 Identities=21% Similarity=0.214 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHhhhcCCCc---------hhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCC--cEE
Q 003716 719 TLTGREHLLFYGRLKNLKG---------PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP--KVR 787 (800)
Q Consensus 719 ~LTv~E~L~~~~~lkg~~~---------~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P--~vl 787 (800)
.||+.|.+.|+..+.--+. +++.+++ +.|+.+||.+ -.+++.+.+|||||+|||.||+||+.+| +++
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~-l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ll 511 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDY-LTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLY 511 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccc-cccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 5789999888876531110 1122222 2367788852 1269999999999999999999999986 899
Q ss_pred EEc
Q 003716 788 LSL 790 (800)
Q Consensus 788 LLD 790 (800)
+||
T Consensus 512 ILD 514 (924)
T TIGR00630 512 VLD 514 (924)
T ss_pred EEc
Confidence 999
No 470
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.61 E-value=0.00012 Score=73.43 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=44.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEE-----------CCeecCc----cHH-Hh-hcceEEecCCCCCCCCC
Q 003716 658 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-----------QGLDIRT----DMD-RI-YTSMGVCPQEDLLWETL 720 (800)
Q Consensus 658 GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i-----------~G~~i~~----~~~-~~-r~~IGycpQ~~~L~~~L 720 (800)
|++++|+|||||||||+++.|++.+.+. |.+.+ +|.+... +.. .. .+.++..+|...++...
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGI 79 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccC
Confidence 6789999999999999999999987654 54444 4444321 111 12 23488888887776666
Q ss_pred CHH
Q 003716 721 TGR 723 (800)
Q Consensus 721 Tv~ 723 (800)
++.
T Consensus 80 ~~~ 82 (179)
T TIGR02322 80 PAE 82 (179)
T ss_pred hHH
Confidence 653
No 471
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.56 E-value=9e-05 Score=81.32 Aligned_cols=81 Identities=19% Similarity=0.133 Sum_probs=55.8
Q ss_pred eeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCC-CCCCCCHHHHHH
Q 003716 649 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL-LWETLTGREHLL 727 (800)
Q Consensus 649 ~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~-L~~~LTv~E~L~ 727 (800)
+=+++.++.|+.+++.|++||||||++++|+|++++..|.+.++. ..+-....+..+++..+... -....|..+.+.
T Consensus 135 ~~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 212 (308)
T TIGR02788 135 EFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQ 212 (308)
T ss_pred HHHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCCCCEEEEEecCCCCCcCccCHHHHHH
Confidence 336788999999999999999999999999999999999988863 21100011234555444321 134567877776
Q ss_pred HHhh
Q 003716 728 FYGR 731 (800)
Q Consensus 728 ~~~~ 731 (800)
...+
T Consensus 213 ~~Lr 216 (308)
T TIGR02788 213 SCLR 216 (308)
T ss_pred HHhc
Confidence 5433
No 472
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.55 E-value=5.3e-05 Score=77.58 Aligned_cols=56 Identities=18% Similarity=0.325 Sum_probs=43.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-cceEEECCeecCccHHHhhcceEEecCCC
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGLDIRTDMDRIYTSMGVCPQED 714 (800)
Q Consensus 656 ~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt-sG~I~i~G~~i~~~~~~~r~~IGycpQ~~ 714 (800)
++|++++|+|+|||||||+.+.|.+.+.+. .|.++++|.++... ....+||.+|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~---~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHG---LCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhh---hhhcCCcCcccH
Confidence 367899999999999999999999977654 46899999877532 223578877764
No 473
>PRK05922 type III secretion system ATPase; Validated
Probab=97.55 E-value=0.0001 Score=84.02 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=45.0
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCee
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~ 695 (800)
..+++.+ +.+.+||.++|+|+||+|||||+++|+|..+++.|.+..-|..
T Consensus 145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGer 194 (434)
T PRK05922 145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGER 194 (434)
T ss_pred ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCC
Confidence 4588887 9999999999999999999999999999999999988766654
No 474
>PRK13695 putative NTPase; Provisional
Probab=97.55 E-value=2.9e-05 Score=77.69 Aligned_cols=31 Identities=6% Similarity=-0.082 Sum_probs=28.0
Q ss_pred cccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 760 DKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 760 d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.+....+||+++.+..+++..+.+|+++++|
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllD 103 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIID 103 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEE
Confidence 4556679999999999999999999999999
No 475
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.55 E-value=6.6e-05 Score=81.10 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=39.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCC
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQED 714 (800)
Q Consensus 660 i~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~ 714 (800)
++||.|+|||||||+.++|+|++++..|.+...+ ++.......++..|+.++++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~D-d~~~~~~~~r~~~g~~~~~p 54 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLD-DYHSLDRKGRKETGITALDP 54 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECc-ccccCCHHHHHHhhcccccc
Confidence 4799999999999999999999999877655433 44332222345577777654
No 476
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.54 E-value=6.3e-05 Score=75.49 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=41.4
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhC--------CCCCCcceEEECCeec
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--------ITRTTSGTAYVQGLDI 696 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtG--------l~~ptsG~I~i~G~~i 696 (800)
+++++++..+++++ +++|++|||||||++.+++ ...|+.|++.++|.++
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~ 65 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKF 65 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEE
Confidence 68888999888888 9999999999999999998 4556678888887654
No 477
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.52 E-value=3e-05 Score=73.87 Aligned_cols=37 Identities=24% Similarity=0.482 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCC--------------CCCCcceEEECCeecC
Q 003716 661 FGMLGPNGAGKTTFISMMIGI--------------TRTTSGTAYVQGLDIR 697 (800)
Q Consensus 661 ~gLLGpNGAGKTTLlk~LtGl--------------~~ptsG~I~i~G~~i~ 697 (800)
++|+|++|||||||++.|+|. ..++.|.+.+...|+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~ 52 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLG 52 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECC
Confidence 589999999999999999998 3333455566666653
No 478
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.50 E-value=8.9e-05 Score=76.39 Aligned_cols=56 Identities=29% Similarity=0.365 Sum_probs=40.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCcc-HHHhhcceEEecCCCCC
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQEDLL 716 (800)
Q Consensus 660 i~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~-~~~~r~~IGycpQ~~~L 716 (800)
.++|+|++|||||||++.+.+.+++..| +.+-..++... ..+..+..|+++|+..+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 59 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERIL 59 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCcee
Confidence 5799999999999999999999888756 44444555432 23334567888887653
No 479
>PLN02796 D-glycerate 3-kinase
Probab=97.49 E-value=3.6e-05 Score=85.13 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=43.0
Q ss_pred eeeeeeEEEE---cCCcE-----EEEEcCCCCcHHHHHHHHhCCCCCC---cceEEECCeecCc
Q 003716 646 VAVNGLSLAL---PSGEC-----FGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRT 698 (800)
Q Consensus 646 ~al~~lsl~I---~~GEi-----~gLLGpNGAGKTTLlk~LtGl~~pt---sG~I~i~G~~i~~ 698 (800)
.+++++++.+ ++|+. +||.|++|||||||.+.|.+++++. .|.|.++|..+..
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~ 143 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTA 143 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccch
Confidence 3556666665 45665 9999999999999999999999875 6889999988754
No 480
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.48 E-value=0.00022 Score=80.41 Aligned_cols=56 Identities=21% Similarity=0.409 Sum_probs=49.2
Q ss_pred CcEEEEeEEEEcCCCCCCCcceeee-----------eeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 003716 625 HAIISDNLRKIYPGRDGNPEKVAVN-----------GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685 (800)
Q Consensus 625 ~~i~i~nL~k~Y~~~~~~~~~~al~-----------~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt 685 (800)
..+.++||+..|++ ++.+|+ |+.+.|.+||..+|+||.|+||||++++|...+...
T Consensus 129 ~ri~Fe~LTf~YP~-----er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 129 NRVLFENLTPLYPN-----ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCeEEEEeeecCCC-----ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 35899999999985 246786 999999999999999999999999999999976543
No 481
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.47 E-value=6.6e-05 Score=72.23 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=25.0
Q ss_pred EEEEcCCCCcHHHHHHHHh--CCCCCCcceE
Q 003716 661 FGMLGPNGAGKTTFISMMI--GITRTTSGTA 689 (800)
Q Consensus 661 ~gLLGpNGAGKTTLlk~Lt--Gl~~ptsG~I 689 (800)
++|+|++|||||||++.|+ +..++.+|+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~ 32 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTP 32 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCC
Confidence 6899999999999999999 6777777664
No 482
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.46 E-value=7.7e-05 Score=91.32 Aligned_cols=97 Identities=14% Similarity=0.198 Sum_probs=61.8
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceE-EecCCCCCCCCCCHHHH
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG-VCPQEDLLWETLTGREH 725 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IG-ycpQ~~~L~~~LTv~E~ 725 (800)
+=+|+++. ..+.++.|.|||++||||++|.+.... +-.++| +||-... ..+.+.++
T Consensus 317 Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~--------------------~maq~G~~vpa~~~--~~i~~~~~ 373 (782)
T PRK00409 317 VPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAA--------------------LMAKSGLPIPANEP--SEIPVFKE 373 (782)
T ss_pred ECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHH--------------------HHHHhCCCcccCCC--ccccccce
Confidence 33445543 346789999999999999999995321 112333 4554421 01111121
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 726 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 726 L~~~~~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
+ +. .+|-. +-..+..+++|+||+|++.+++++ .+|+++|||
T Consensus 374 i--~~-------------------~ig~~--~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlD 414 (782)
T PRK00409 374 I--FA-------------------DIGDE--QSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFD 414 (782)
T ss_pred E--EE-------------------ecCCc--cchhhchhHHHHHHHHHHHHHHhC-CcCcEEEec
Confidence 1 11 12221 234567889999999999999998 899999999
No 483
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.44 E-value=0.00015 Score=93.78 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=43.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHH----hCCCCCC-cceEEECCeecCccHHHhhcceEEecCC
Q 003716 658 GECFGMLGPNGAGKTTFISMM----IGITRTT-SGTAYVQGLDIRTDMDRIYTSMGVCPQE 713 (800)
Q Consensus 658 GEi~gLLGpNGAGKTTLlk~L----tGl~~pt-sG~I~i~G~~i~~~~~~~r~~IGycpQ~ 713 (800)
..+++|+|||||||||++.+| +|..+|. .|.++|.|.++... ...+..|.+.+++
T Consensus 28 ~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~-~~~~a~V~l~F~~ 87 (1311)
T TIGR00606 28 SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQE-TDVRAQIRLQFRD 87 (1311)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCcc-HhhhheeEEEEEc
Confidence 349999999999999999999 6999996 79999988776543 2445667777753
No 484
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.43 E-value=0.00028 Score=67.94 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=55.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 739 (800)
Q Consensus 660 i~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~~~~~lkg~~~~~ 739 (800)
++.|.|++|+||||+++.+++...+..|.+.+-+.+.... ..+ +.+. ...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~--~~~-------------------~~~~---~~~------ 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE--ELT-------------------ERLI---GES------ 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH--HHH-------------------HHHh---hhh------
Confidence 3679999999999999999998877666665544332111 000 1000 000
Q ss_pred HHHHHHHHHHHcCCCCCccccccCCCCChhHHHHHHHHHHHcCCCcEEEEc
Q 003716 740 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVRLSL 790 (800)
Q Consensus 740 ~~~~v~~~L~~l~L~~~~~~d~~~~~LSGG~KrRLsiA~ALig~P~vlLLD 790 (800)
.....+.. ..........+.+..++...+++...+|+++++|
T Consensus 51 ----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviD 92 (165)
T cd01120 51 ----LKGALDNL-----IIVFATADDPAAARLLSKAERLRERGGDDLIILD 92 (165)
T ss_pred ----hccccccE-----EEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEE
Confidence 00000111 1223333445566777888999999999999999
No 485
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.42 E-value=4.2e-05 Score=76.16 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=45.2
Q ss_pred EcCCCCcHHHHHHHHhCCCCCCcceEEECCeecCccHHHhh-cceEEecCCCCCCCCCCHHHHHHHH
Q 003716 664 LGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY-TSMGVCPQEDLLWETLTGREHLLFY 729 (800)
Q Consensus 664 LGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~~~~~~~r-~~IGycpQ~~~L~~~LTv~E~L~~~ 729 (800)
+|++||||||+.++|.+.+ |.++++|..+.. ...++ ...|+.+|+....+.++..++..+-
T Consensus 1 ~G~sGsGKSTla~~la~~l----~~~~~~~d~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 62 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP-RRNIEKMASGEPLNDDDRKPWLQALNDAAFA 62 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh----CCeEEeCccCCc-hhhhccccCCCCCChhhHHHHHHHHHHHHHH
Confidence 5999999999999999987 678999854432 22233 3568888887666777777777653
No 486
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.38 E-value=0.00019 Score=92.73 Aligned_cols=47 Identities=17% Similarity=0.139 Sum_probs=41.9
Q ss_pred eeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCee
Q 003716 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695 (800)
Q Consensus 648 l~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~ 695 (800)
+.+..|.+.+| +++|+|+|||||||+|++|.|++.|+.|.+.+++.+
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~ 64 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence 45667888876 999999999999999999999999999999988765
No 487
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.37 E-value=0.00018 Score=82.00 Aligned_cols=40 Identities=28% Similarity=0.512 Sum_probs=37.2
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 685 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pt 685 (800)
..+++.+ +.+.+||.++|+|+||+|||||+++|+|...++
T Consensus 150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 5688888 999999999999999999999999999988775
No 488
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.31 E-value=0.00028 Score=69.43 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=32.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC----CCCCcc----eEEECCeec
Q 003716 660 CFGMLGPNGAGKTTFISMMIGI----TRTTSG----TAYVQGLDI 696 (800)
Q Consensus 660 i~gLLGpNGAGKTTLlk~LtGl----~~ptsG----~I~i~G~~i 696 (800)
.++++|+||||||||++.|+|. ..|+.| .+.++|.++
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~ 60 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKL 60 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEE
Confidence 4889999999999999999997 568889 888888765
No 489
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.28 E-value=0.00015 Score=84.52 Aligned_cols=53 Identities=26% Similarity=0.405 Sum_probs=49.0
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCeecC
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 697 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~~i~ 697 (800)
..+++.+++.+..|+.+.|+||||+||||++++|.|+++|.+|++.+++..+.
T Consensus 198 ~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~ 250 (499)
T TIGR00368 198 QHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIW 250 (499)
T ss_pred HHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccc
Confidence 56889999999999999999999999999999999999999999998877663
No 490
>PRK14079 recF recombination protein F; Provisional
Probab=97.27 E-value=0.00054 Score=76.57 Aligned_cols=30 Identities=33% Similarity=0.625 Sum_probs=25.2
Q ss_pred eeeeEEEEcCCcEEEEEcCCCCcHHHHHHHH
Q 003716 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMM 678 (800)
Q Consensus 648 l~~lsl~I~~GEi~gLLGpNGAGKTTLlk~L 678 (800)
+++.++++.+| +.+|+|+|||||||++..|
T Consensus 14 ~~~~~l~f~~g-~nvi~G~NGsGKT~lLeAI 43 (349)
T PRK14079 14 LAPPTLAFPPG-VTAVVGENAAGKTNLLEAI 43 (349)
T ss_pred cccceEEeCCC-eEEEECCCCCCHHHHHHHH
Confidence 45667777776 8899999999999999884
No 491
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.25 E-value=0.00032 Score=72.27 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=25.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGIT 682 (800)
Q Consensus 656 ~~GEi~gLLGpNGAGKTTLlk~LtGl~ 682 (800)
.++.++||.|++|||||||.+.|.+.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999999987
No 492
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.21 E-value=5e-05 Score=76.11 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=43.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHh---CCCCCCcceEEECCeecCccHHHhhcceEEecCCCCCCCCCCHHHHHH
Q 003716 658 GECFGMLGPNGAGKTTFISMMI---GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 727 (800)
Q Consensus 658 GEi~gLLGpNGAGKTTLlk~Lt---Gl~~ptsG~I~i~G~~i~~~~~~~r~~IGycpQ~~~L~~~LTv~E~L~ 727 (800)
..+++++|++||||||+.+.|+ |+..++.|++.......... ..+.++.+.|...+.+..++.+++.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ 72 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSE---RGKQLQAIMESGDLVPLDTVLDLLK 72 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCH---HHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 4689999999999999999999 98888888765442111111 1123444445545555555555554
No 493
>PRK06820 type III secretion system ATPase; Validated
Probab=97.21 E-value=0.00043 Score=79.23 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=42.9
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCe
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL 694 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~ 694 (800)
..+++.+ +.+.+||.++|+|+||+|||||+++|++...++.+-+-.-|+
T Consensus 151 i~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iGe 199 (440)
T PRK06820 151 IRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGE 199 (440)
T ss_pred Cceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEcc
Confidence 5799999 999999999999999999999999999999998754433343
No 494
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.19 E-value=0.0004 Score=79.34 Aligned_cols=41 Identities=24% Similarity=0.511 Sum_probs=38.6
Q ss_pred ceeeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc
Q 003716 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686 (800)
Q Consensus 645 ~~al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtGl~~pts 686 (800)
..+++++ +.+.+||.++|+|+||+|||||+++|++...++-
T Consensus 150 i~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv 190 (439)
T PRK06936 150 VRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV 190 (439)
T ss_pred cceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence 5699999 9999999999999999999999999999998864
No 495
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.15 E-value=0.00095 Score=79.99 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=32.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcc--------eEEECCeec
Q 003716 656 PSGECFGMLGPNGAGKTTFISMMIGITRTTSG--------TAYVQGLDI 696 (800)
Q Consensus 656 ~~GEi~gLLGpNGAGKTTLlk~LtGl~~ptsG--------~I~i~G~~i 696 (800)
...+.+.|+||||+||||+.+++.++.++..| -+.++|.++
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 34567999999999999999999998865544 367776554
No 496
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.13 E-value=0.00025 Score=71.39 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 003716 660 CFGMLGPNGAGKTTFISMMIGI 681 (800)
Q Consensus 660 i~gLLGpNGAGKTTLlk~LtGl 681 (800)
.++|+|++|+|||||++.++|.
T Consensus 26 ~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 26 EIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3889999999999999999994
No 497
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.07 E-value=0.0014 Score=67.41 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC-CcceEEECCeec
Q 003716 660 CFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDI 696 (800)
Q Consensus 660 i~gLLGpNGAGKTTLlk~LtGl~~p-tsG~I~i~G~~i 696 (800)
++.+.||+||||||+++.|.+.+.+ ..|.|...+.++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI 40 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence 6789999999999999998888764 356766654443
No 498
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.02 E-value=0.00056 Score=69.98 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=30.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCCcceEEECCe
Q 003716 661 FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL 694 (800)
Q Consensus 661 ~gLLGpNGAGKTTLlk~LtGl~~ptsG~I~i~G~ 694 (800)
++++|++|+|||||+|+|+|...+++|.+..+..
T Consensus 4 I~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~ 37 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGVGHEEEGAAPTGVV 37 (197)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCCccccCcc
Confidence 6899999999999999999999888888877643
No 499
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.99 E-value=0.00057 Score=68.30 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC
Q 003716 658 GECFGMLGPNGAGKTTFISMMIGITR 683 (800)
Q Consensus 658 GEi~gLLGpNGAGKTTLlk~LtGl~~ 683 (800)
|++++|+|||||||||+++.|++..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999764
No 500
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=96.98 E-value=0.00058 Score=68.48 Aligned_cols=33 Identities=27% Similarity=0.523 Sum_probs=26.4
Q ss_pred eeeeeEEEEcCCcEEEEEcCCCCcHHHHHHHHhC
Q 003716 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 680 (800)
Q Consensus 647 al~~lsl~I~~GEi~gLLGpNGAGKTTLlk~LtG 680 (800)
.++++++++.+| +.+|.|+||+||||++.+|.-
T Consensus 9 ~~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~ 41 (202)
T PF13476_consen 9 SFKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRY 41 (202)
T ss_dssp TEEEEEEE--SE-EEEEEESTTSSHHHHHHHHHH
T ss_pred CCcceEEEcCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 457888888777 999999999999999987654
Done!