Query 003716
Match_columns 800
No_of_seqs 323 out of 2643
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 18:10:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003716.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1764-1768//hhsearch_pdb/003716hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 1.0 1 1 267.8 21.3 163 624-790 22-188 (366)
2 3fvq_A Fe(3+) IONS import ATP- 1.0 1 1 266.6 18.3 157 626-790 4-163 (359)
3 3rlf_A Maltose/maltodextrin im 1.0 1 1 263.9 19.2 156 626-790 3-158 (381)
4 1z47_A CYSA, putative ABC-tran 1.0 1 1 261.0 19.1 160 623-790 11-170 (355)
5 1oxx_K GLCV, glucose, ABC tran 1.0 1 1 260.7 16.9 157 626-790 3-165 (353)
6 2yyz_A Sugar ABC transporter, 1.0 1 1 260.0 18.1 156 626-790 3-158 (359)
7 1g29_1 MALK, maltose transport 1.0 1 1 259.5 19.3 157 626-790 3-164 (372)
8 1v43_A Sugar-binding transport 1.0 1 1 258.9 17.7 156 626-790 11-166 (372)
9 2it1_A 362AA long hypothetical 1.0 1 1 258.4 21.2 156 626-790 3-158 (362)
10 1vpl_A ABC transporter, ATP-bi 1.0 1 1 257.3 21.0 159 624-790 13-171 (256)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=1.00 E-value=1 Score=267.76 Aligned_cols=163 Identities=29% Similarity=0.414 Sum_probs=148.1
Q ss_pred CCCEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC----C
Q ss_conf 770999948999199888986301332278771995999986999938899999839998992169997863676----5
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----D 699 (800)
Q Consensus 624 ~~~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~----~ 699 (800)
...+.++|++|.|++.+ ..+.|++++||++++||++||+|||||||||++|+|+|+++|++|++.++|.++.. +
T Consensus 22 ~~mi~v~~ls~~y~~~~--~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGT--RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp -CCEEEEEEEEEEECSS--SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCEEEEEEEEEEECCCC--CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHH
T ss_conf 86599984899938988--7737887469998489899999589955999999996699999629999999987589879
Q ss_pred HHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88862243886488888999999999999856049991569999999999849998761236689889669999999999
Q 003716 700 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 700 ~~~~~~~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiA 779 (800)
..+.++.+||+||+..+++.+|++|++.+..++++.+.++..+.++++++.++|. +..++++.+||||||||+.+|+|
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~--~~~~~~~~~LSGGqkQRVaIArA 177 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG--DKHDSYPSNLSGGQKQRVAIARA 177 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG--GGTTCCTTTSCHHHHHHHHHHHH
T ss_pred HHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC--HHHCCCHHHCCHHHHHHHHHHHH
T ss_conf 9987386899927875688889999999999865998789999999999976993--47619945589999999999999
Q ss_pred HCCCCCEEEEC
Q ss_conf 90899579982
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~VvlLD 790 (800)
|+.+|++++||
T Consensus 178 L~~~P~lLLlD 188 (366)
T 3tui_C 178 LASNPKVLLCD 188 (366)
T ss_dssp TTTCCSEEEEE
T ss_pred HHCCCCEEEEE
T ss_conf 96699999997
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=1.00 E-value=1 Score=266.58 Aligned_cols=157 Identities=25% Similarity=0.343 Sum_probs=143.9
Q ss_pred CEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECC---CCHHH
Q ss_conf 099994899919988898630133227877199599998699993889999983999899216999786367---65888
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR---TDMDR 702 (800)
Q Consensus 626 ~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~---~~~~~ 702 (800)
.+.++|++|.|++ +.+++++||++++||+++|+|||||||||++|+|+|+++|++|++.++|.++. .+...
T Consensus 4 ~l~i~~ls~~y~~------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~ 77 (359)
T 3fvq_A 4 ALHIGHLSKSFQN------TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77 (359)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCG
T ss_pred EEEEEEEEEEECC------EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCH
T ss_conf 8999969999899------8889753899959989999999980599999999669989973899999997545566554
Q ss_pred HHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 62243886488888999999999999856049991569999999999849998761236689889669999999999908
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 703 ~~~~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiALig 782 (800)
.++.+||++|...+++.+|++|++.+..+.++.+.++..+.++++++.++|. ++.++++.+||||||||+.+|+||+.
T Consensus 78 ~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~--~~~~r~~~~LSGGq~QRValArAL~~ 155 (359)
T 3fvq_A 78 RERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS--ELAGRYPHELSGGQQQRAALARALAP 155 (359)
T ss_dssp GGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG--GGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred HHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC--HHHCCCHHHCCHHHHHHHHHHHHHHC
T ss_conf 1088899907875789999999999999876998689999999999886990--37558924579999999999999973
Q ss_pred CCCEEEEC
Q ss_conf 99579982
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~VvlLD 790 (800)
+|+++|||
T Consensus 156 ~P~lLLLD 163 (359)
T 3fvq_A 156 DPELILLD 163 (359)
T ss_dssp CCSEEEEE
T ss_pred CCCEEEEE
T ss_conf 99999996
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=1.00 E-value=1 Score=263.89 Aligned_cols=156 Identities=24% Similarity=0.397 Sum_probs=144.6
Q ss_pred CEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHC
Q ss_conf 09999489991998889863013322787719959999869999388999998399989921699978636765888622
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~~~~~~~ 705 (800)
.+.++|++|.|++ +.+++++||++++||+++|+|||||||||++|+|+|+++|++|+++++|.++.... ..++
T Consensus 3 ~l~~~~l~~~yg~------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~-~~~r 75 (381)
T 3rlf_A 3 SVQLQNVTKAWGE------VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP-PAER 75 (381)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-GGGS
T ss_pred EEEEEEEEEEECC------EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCC-HHHC
T ss_conf 8999848999899------99996568998799899999689955999999997699889719999999998799-7788
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 43886488888999999999999856049991569999999999849998761236689889669999999999908995
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiALig~P~ 785 (800)
.+||++|+..|++.+|++|++.+..+.++.++++..+.++++++.++|. +..++++.+||||||||+.+|+||+.+|+
T Consensus 76 ~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~p~~LSGGqrQRVaiArAL~~~P~ 153 (381)
T 3rlf_A 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA--HLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (381)
T ss_dssp CEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCG--GGTTCCGGGSCHHHHHHHHHHHHHHHCCS
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC--HHHCCCHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 8899906875789999999999999775999899999999999885994--16539925799999999999999981999
Q ss_pred EEEEC
Q ss_conf 79982
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 VvlLD 790 (800)
+++||
T Consensus 154 lLLLD 158 (381)
T 3rlf_A 154 VFLLD 158 (381)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99998
No 4
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=1.00 E-value=1 Score=261.03 Aligned_cols=160 Identities=29% Similarity=0.453 Sum_probs=144.4
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHH
Q ss_conf 97709999489991998889863013322787719959999869999388999998399989921699978636765888
Q 003716 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 702 (800)
Q Consensus 623 ~~~~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~~~~ 702 (800)
.+..+.++|++|.|++ .+.+++++||++++||+++|+|||||||||++|+|+|+++|++|++.++|.++... ..
T Consensus 11 ~~~~l~~~~l~~~y~g-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~-~~ 84 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPG-----GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDL-PP 84 (355)
T ss_dssp CCEEEEEEEEEECCTT-----STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC-CG
T ss_pred CCCEEEEEEEEEEECC-----CCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-CH
T ss_conf 9866999979999759-----97899634899979979999989997099999999679988961999999999868-76
Q ss_pred HHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 62243886488888999999999999856049991569999999999849998761236689889669999999999908
Q 003716 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (800)
Q Consensus 703 ~~~~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiALig 782 (800)
.++.+||+||+..+++.+|++|++.+..+.++.+.++..+.++++++.++|. +..++++.+||||||||+.+|+||+.
T Consensus 85 ~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~--~~~~r~~~~LSGGq~QRvalArAL~~ 162 (355)
T 1z47_A 85 QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE--SYANRFPHELSGGQQQRVALARALAP 162 (355)
T ss_dssp GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred HHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH--HHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 4574899926863578988999999999774998789999999999876994--58609920189999999999999973
Q ss_pred CCCEEEEC
Q ss_conf 99579982
Q 003716 783 NPKVRLSL 790 (800)
Q Consensus 783 ~P~VvlLD 790 (800)
+|++++||
T Consensus 163 ~P~lLLLD 170 (355)
T 1z47_A 163 RPQVLLFD 170 (355)
T ss_dssp CCSEEEEE
T ss_pred CCCEEEEE
T ss_conf 99989996
No 5
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=1.00 E-value=1 Score=260.71 Aligned_cols=157 Identities=26% Similarity=0.445 Sum_probs=142.4
Q ss_pred CEEEEEEEEECCCCCCCCCCE--EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC----
Q ss_conf 099994899919988898630--13322787719959999869999388999998399989921699978636765----
Q 003716 626 AIISDNLRKIYPGRDGNPEKV--AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---- 699 (800)
Q Consensus 626 ~i~i~nL~K~y~~~~~~~~~~--av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~---- 699 (800)
.+.++|++|.|++ +. +++++||++++||+++|+|||||||||++|+|+|+++|++|++.++|.++...
T Consensus 3 ~l~i~~l~~~y~~------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~ 76 (353)
T 1oxx_K 3 RIIVKNVSKVFKK------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76 (353)
T ss_dssp CEEEEEEEEEEGG------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEES
T ss_pred EEEEEEEEEEECC------EEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCCCC
T ss_conf 8999869999899------8201481348999799899999799970999999996799888409999999986555456
Q ss_pred HHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88862243886488888999999999999856049991569999999999849998761236689889669999999999
Q 003716 700 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (800)
Q Consensus 700 ~~~~~~~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiA 779 (800)
....++.+||+||+..+++++|++|++.+..+.++.+.++..+.++++++.++|. +..++++.+||||||||+.+|+|
T Consensus 77 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~~~~LSGGq~QRvalAra 154 (353)
T 1oxx_K 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH--HVLNHFPRELSGAQQQRVALARA 154 (353)
T ss_dssp SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHH
T ss_pred CCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC--HHHCCCHHHCCHHHHHHHHHHHH
T ss_conf 8764397899947874679989999999999875999899999999999886990--37509935699999999999999
Q ss_pred HCCCCCEEEEC
Q ss_conf 90899579982
Q 003716 780 LIGNPKVRLSL 790 (800)
Q Consensus 780 Lig~P~VvlLD 790 (800)
|+.+|++++||
T Consensus 155 L~~~P~lLLLD 165 (353)
T 1oxx_K 155 LVKDPSLLLLD 165 (353)
T ss_dssp HTTCCSEEEEE
T ss_pred HHHCCCEEEEE
T ss_conf 97099999997
No 6
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=260.02 Aligned_cols=156 Identities=29% Similarity=0.442 Sum_probs=140.8
Q ss_pred CEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHC
Q ss_conf 09999489991998889863013322787719959999869999388999998399989921699978636765888622
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~~~~~~~ 705 (800)
.+.++|++|.|++ +.+++++||++++||+++|+|||||||||++|+|+|+++|++|++.++|.++.... ..++
T Consensus 3 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r 75 (359)
T 2yyz_A 3 SIRVVNLKKYFGK------VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP-PKYR 75 (359)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGT
T ss_pred EEEEEEEEEEECC------EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCC-HHHC
T ss_conf 8999979999899------88896558998699899999689823999999997799889629999999998798-6458
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 43886488888999999999999856049991569999999999849998761236689889669999999999908995
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiALig~P~ 785 (800)
.+||+||+..+++++|++|++.+..+.++.+.++..+.++++++.++|. +..++++.+||||||||+.+|+||+.+|+
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSgGq~QRvalArAL~~~P~ 153 (359)
T 2yyz_A 76 EVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLID--NLLDRKPTQLSGGQQQRVALARALVKQPK 153 (359)
T ss_dssp TEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC--HHHCCCHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 4899906864579988999999999765998799999999999886995--37628934699999999999999971999
Q ss_pred EEEEC
Q ss_conf 79982
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 VvlLD 790 (800)
+++||
T Consensus 154 lLLLD 158 (359)
T 2yyz_A 154 VLLFD 158 (359)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 89998
No 7
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=1.00 E-value=1 Score=259.46 Aligned_cols=157 Identities=22% Similarity=0.383 Sum_probs=142.6
Q ss_pred CEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-----H
Q ss_conf 09999489991998889863013322787719959999869999388999998399989921699978636765-----8
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----M 700 (800)
Q Consensus 626 ~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~-----~ 700 (800)
.+.++|++|.|++ +.+++++||++++||+++|+|||||||||++|+|+|+++|++|++.++|.++... .
T Consensus 3 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~ 76 (372)
T 1g29_1 3 GVRLVDVWKVFGE------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (372)
T ss_dssp EEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred EEEEEEEEEEECC------EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCC
T ss_conf 8999969999899------8888313899969989999999993799999999769989963899999998654443458
Q ss_pred HHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 88622438864888889999999999998560499915699999999998499987612366898896699999999999
Q 003716 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (800)
Q Consensus 701 ~~~~~~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiAL 780 (800)
...++.+||+||+..+++++|++|++.+..+.++.+..+..+.++++++.++|. +..++++.+||||||||+.+|+||
T Consensus 77 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSGGq~QRvalArAL 154 (372)
T 1g29_1 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT--ELLNRKPRELSGGQRQRVALGRAI 154 (372)
T ss_dssp CGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG--GGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred CHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC--HHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 876798899927875689988999999999775999799999999999987991--376089112999999999999998
Q ss_pred CCCCCEEEEC
Q ss_conf 0899579982
Q 003716 781 IGNPKVRLSL 790 (800)
Q Consensus 781 ig~P~VvlLD 790 (800)
+.+|++++||
T Consensus 155 ~~~P~lLLLD 164 (372)
T 1g29_1 155 VRKPQVFLMD 164 (372)
T ss_dssp HTCCSEEEEE
T ss_pred HCCCCEEEEC
T ss_conf 6589999987
No 8
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=1.00 E-value=1 Score=258.95 Aligned_cols=156 Identities=26% Similarity=0.402 Sum_probs=142.0
Q ss_pred CEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHC
Q ss_conf 09999489991998889863013322787719959999869999388999998399989921699978636765888622
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~~~~~~~ 705 (800)
.+.++|++|.|++ +.+++++||++++||+++|+|||||||||++|+|+|+++|++|++.++|.++.... ..++
T Consensus 11 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r 83 (372)
T 1v43_A 11 EVKLENLTKRFGN------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-PKDR 83 (372)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGG
T ss_pred EEEEEEEEEEECC------EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCC-HHHC
T ss_conf 6999989999899------78886548999799899999999986999999997699888409999999998798-6568
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 43886488888999999999999856049991569999999999849998761236689889669999999999908995
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiALig~P~ 785 (800)
.+||+||+..+++++|++|++.+..+.++.+.++..+.++++++.++|. ++.++++.+||||||||+.+|+||+.+|+
T Consensus 84 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSGGq~QRvalArAL~~~P~ 161 (372)
T 1v43_A 84 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE--ELLNRYPAQLSGGQRQRVAVARAIVVEPD 161 (372)
T ss_dssp TEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG--GGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH--HHHCCCHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 5899916764579988999999888764898799999999999985992--48639910399999999999999961999
Q ss_pred EEEEC
Q ss_conf 79982
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 VvlLD 790 (800)
+++||
T Consensus 162 lLLLD 166 (372)
T 1v43_A 162 VLLMD 166 (372)
T ss_dssp EEEEE
T ss_pred EEEEC
T ss_conf 99971
No 9
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=1.00 E-value=1 Score=258.38 Aligned_cols=156 Identities=26% Similarity=0.398 Sum_probs=142.3
Q ss_pred CEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHC
Q ss_conf 09999489991998889863013322787719959999869999388999998399989921699978636765888622
Q 003716 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (800)
Q Consensus 626 ~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~~~~~~~ 705 (800)
.+.++|++|.|++ +.+++++||++++||+++|+|||||||||++|+|+|+++|++|++.++|.++.... ..++
T Consensus 3 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r 75 (362)
T 2it1_A 3 EIKLENIVKKFGN------FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP-PKDR 75 (362)
T ss_dssp CEEEEEEEEESSS------SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGT
T ss_pred EEEEEEEEEEECC------EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCC-HHHC
T ss_conf 7999969999899------78897558999799899999999935999999996699888509999999998699-7578
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 43886488888999999999999856049991569999999999849998761236689889669999999999908995
Q 003716 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (800)
Q Consensus 706 ~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiALig~P~ 785 (800)
.+||+||+..+++++|++|++.+..+.++.+.++..+.++++++.++|. +..++++.+||||||||+.+|+||+.+|+
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSGGq~QRvalArAL~~~P~ 153 (362)
T 2it1_A 76 NVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID--KLLNRYPWQLSGGQQQRVAIARALVKEPE 153 (362)
T ss_dssp TEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT--TCTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC--HHHHCCHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 4899946764578987999999998764898799999999999885990--47608930389999999999999972999
Q ss_pred EEEEC
Q ss_conf 79982
Q 003716 786 VRLSL 790 (800)
Q Consensus 786 VvlLD 790 (800)
+++||
T Consensus 154 lLLLD 158 (362)
T 2it1_A 154 VLLLD 158 (362)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99998
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=1.00 E-value=1 Score=257.35 Aligned_cols=159 Identities=27% Similarity=0.441 Sum_probs=144.6
Q ss_pred CCCEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHH
Q ss_conf 77099994899919988898630133227877199599998699993889999983999899216999786367658886
Q 003716 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (800)
Q Consensus 624 ~~~i~i~nL~K~y~~~~~~~~~~av~~lsl~i~~Gei~gLLG~NGAGKTTll~mLtG~~~ptsG~v~I~G~~i~~~~~~~ 703 (800)
-..+.++|++|.|++ +.+++++||++++||++||+|||||||||++++|+|+++|++|++.++|.++.....+.
T Consensus 13 ~~~l~i~~l~~~y~~------~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp -CCEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHH
T ss_pred CCEEEEEEEEEEECC------EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHH
T ss_conf 773999979999899------88897427998299299999999999999999996699888639999999988567988
Q ss_pred HCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 22438864888889999999999998560499915699999999998499987612366898896699999999999089
Q 003716 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (800)
Q Consensus 704 ~~~iGycPQ~d~L~~~LT~~EhL~~ya~lkg~~~~~~~~~v~~~L~~l~L~~~~~~d~~~~~lSGG~KRrLSiAiALig~ 783 (800)
++.+||+||...+++.+|++|++.++.++++.+..+..+.++++++.++|. +..++++.+||||||||+++|+||+.+
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~qRv~lAraL~~~ 164 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG--EKIKDRVSTYSKGMVRKLLIARALMVN 164 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG--GGGGSBGGGCCHHHHHHHHHHHHHTTC
T ss_pred HHCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC--HHHCCCHHHCCHHHHHHHHHHHHHHCC
T ss_conf 501899837887888994999999999872998689999999999987995--476199545899999999999999749
Q ss_pred CCEEEEC
Q ss_conf 9579982
Q 003716 784 PKVRLSL 790 (800)
Q Consensus 784 P~VvlLD 790 (800)
|++++||
T Consensus 165 p~lllLD 171 (256)
T 1vpl_A 165 PRLAILD 171 (256)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
T ss_conf 9999995
Done!