BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003717
(800 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3UHX0|NOL8_MOUSE Nucleolar protein 8 OS=Mus musculus GN=Nol8 PE=1 SV=2
Length = 1147
Score = 66.6 bits (161), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKG------RSFGYVDFFPSSHKS 65
E R++VGGLG+ +++ DL F GEV V+I+ K + F YV+ +
Sbjct: 6 EMKRLFVGGLGQGISETDLQNQFGRFGEVSDVEIITRKDDQGNSQKVFAYVN-IQITEAD 64
Query: 66 LSKLFSTYNGCVWKGGRLRLERAKEHYLARLKRE 99
L K S N WKGG L+++ AKE +L RL +E
Sbjct: 65 LKKCMSILNKTKWKGGTLQIQLAKESFLHRLAQE 98
>sp|Q76FK4|NOL8_HUMAN Nucleolar protein 8 OS=Homo sapiens GN=NOL8 PE=1 SV=1
Length = 1167
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKG------RSFGYVDFFPSSHKS 65
E R+YVGGL + +++ DL FS GEV V+I+ K + F Y++ +
Sbjct: 6 ETKRLYVGGLSQDISEADLQNQFSRFGEVSDVEIITRKDDQGNPQKVFAYIN-ISVAEAD 64
Query: 66 LSKLFSTYNGCVWKGGRLRLERAKEHYLARLKRE 99
L K S N WKGG L+++ AKE +L RL +E
Sbjct: 65 LKKCMSVLNKTKWKGGTLQIQLAKESFLHRLAQE 98
>sp|Q9HFE6|YNW6_SCHPO Uncharacterized RNA-binding protein P16F5.06 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP16F5.06 PE=1 SV=1
Length = 478
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 10 VEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKG-----RSFGYVDFFPSSHK 64
+E + RIYVGGL + DL FS G V ++I+ + F Y++F K
Sbjct: 1 MELEKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDK 60
Query: 65 SLSKLFSTYNGCVWKGGRLRLERAKEHYLARLKREWAEDDAQLVN 109
K S + +KG +LR+E A+ +YL +L++E D Q N
Sbjct: 61 -WQKCKSYLSNATFKGSKLRIEEARPYYLVKLQQEKKIADLQSTN 104
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 57/99 (57%), Gaps = 9/99 (9%)
Query: 1 MEKKEAEAEVEEQ----TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR---TKGRSF 53
+ KK+ +++ EE T +YV + +VTD++ ++F+ GEV + + R K R F
Sbjct: 224 IPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGF 283
Query: 54 GYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEHY 92
G+V+F ++H++ ++ NG ++G L + RA++ +
Sbjct: 284 GFVNF--TTHEAAAQAVDELNGKDFRGQDLYVGRAQKKH 320
>sp|Q04047|NONA_DROME Protein no-on-transient A OS=Drosophila melanogaster GN=nonA PE=1
SV=2
Length = 700
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 7 EAEVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSL 66
E + + R+YVG L +TDD+L ++F GE+ + K +F VD+ P++ K+
Sbjct: 295 ETKFSGRNRLYVGNLTNDITDDELREMFKPYGEISEIFSNLDKNFTFLKVDYHPNAEKAK 354
Query: 67 SKLFSTYNGCVWKGGRLRLERAKEHYLARL 96
L +G + KG +LR+ A + R+
Sbjct: 355 RAL----DGSMRKGRQLRVRFAPNATILRV 380
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 20/134 (14%)
Query: 1 MEKKEAEAEVEEQ----TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR---TKGRSF 53
+ KK+ +++ EE T +Y+ + ++VTD++ K+F GE+ + + R K R F
Sbjct: 216 ISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGF 275
Query: 54 GYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA-----------KEHYLARLKREWAE 102
G+V+F S+H S N KG +L + RA K++ ARL++
Sbjct: 276 GFVNF--STHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKY 333
Query: 103 DDAQLVNPPVTDSV 116
L +TD V
Sbjct: 334 QGVNLYVKNLTDDV 347
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 20/134 (14%)
Query: 1 MEKKEAEAEVEEQ----TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR---TKGRSF 53
+ KK+ +++ EE T +Y+ + ++VTD++ K+F GE+ + + R K R F
Sbjct: 216 ISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGF 275
Query: 54 GYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA-----------KEHYLARLKREWAE 102
G+V+F S+H S N KG +L + RA K++ ARL++
Sbjct: 276 GFVNF--STHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKY 333
Query: 103 DDAQLVNPPVTDSV 116
L +TD V
Sbjct: 334 QGVNLYVKNLTDDV 347
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFF--PSSHKSLSKLFS 71
T I+VGGL VTD+DL + FS GE+ +V I G+ G+V F P++ ++L KL
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI--PVGKGCGFVQFVNRPNAEEALEKL-- 361
Query: 72 TYNGCVWKGGRLRLERAK 89
NG V +RL +
Sbjct: 362 --NGTVIGKQTVRLSWGR 377
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 16 IYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK--GRSFGYVDFFPSSHKSLSKLFSTY 73
I+VGGL ++T+ D+ VFS GE+ +++VR K G+S G+ +S +
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 74 NGCVWKGGRLRLERAKEHYLAR-------LKREWAEDDAQLVNPPVTDSVAPDNKDA 123
NG KG +R++ + + + RE E + PP + +++DA
Sbjct: 98 NGIKIKGRTIRVDHVSNYRAPQESEDVDDVTRELQEKGCGVKTPPSSPPEVSEDEDA 154
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFF--PSSHKSLSKLFS 71
T I+VGGL VTD+DL + F+ GE+ +V I G+ G+V F P++ ++L KL
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI--PVGKGCGFVQFVNRPNAEEALEKL-- 359
Query: 72 TYNGCVWKGGRLRLERAK 89
NG V +RL +
Sbjct: 360 --NGTVIGKQTVRLSWGR 375
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 11/107 (10%)
Query: 3 KKEAEAEV----EEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR---TKGRSFGY 55
+KE EAE+ +E T +Y+ GE+V D+ L ++FS G+ +V ++R K + FG+
Sbjct: 176 RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 56 VDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA--KEHYLARLKREW 100
V + H+ +K NG G + + RA K A LKR++
Sbjct: 236 VSY--EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKF 280
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 16 IYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRS--FGYVDFFPSSHKSLSKLFSTY 73
+Y+ L + + D+ L K FS G + + ++ GRS FG+V F SS + +K +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCF--SSPEEATKAVTEM 353
Query: 74 NGCVWKGGRLRLERAKEHYLARLKREWAEDDAQLVN 109
NG R+ +K Y+A +R+ E A L N
Sbjct: 354 NG--------RIVGSKPLYVALAQRK-EERKAHLTN 380
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 2 EKKEAEAEVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK--GRSFGYVDFF 59
EK +E ++ I++GGL ++T+ D+ VFS GE+ +++VR K G+S G+
Sbjct: 24 EKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLC 83
Query: 60 PSSHKSLSKLFSTYNGCVWKGGRLRLERAKEHYLAR-------LKREWAEDDAQLVNPPV 112
+S +NG KG +R++ + + + RE E PP
Sbjct: 84 YEDQRSTVLAVDNFNGIKIKGRTIRVDHVANYRAPQESEDVDDVTRELQEKGCGAKTPPS 143
Query: 113 TDSVAPDNKDA 123
+ +++DA
Sbjct: 144 SPPEVSEDEDA 154
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 1 MEKKEAEAEVEEQ----TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR---TKGRSF 53
+ KK+ +++ EE T IYV + + TD++ +F+ G+V + + R K R F
Sbjct: 229 IPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGF 288
Query: 54 GYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEHY 92
G+V+F ++H+ +K NG ++G L + RA++ +
Sbjct: 289 GFVNF--TTHECAAKAVEELNGKEFRGQDLYVGRAQKKH 325
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 5 EAEAEVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR---TKGRSFGYVDFFPS 61
E A+V E T +Y+ GE + D L ++FS+ G +V ++ + R FG+V++
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNY--G 239
Query: 62 SHKSLSKLFSTYNGCVWKGGRLRLERAKEHY--LARLKREWAEDDAQLVN 109
+H+ K S NG G + + RA++ LKR++ + + +N
Sbjct: 240 NHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERIN 289
Score = 33.5 bits (75), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 21/134 (15%)
Query: 16 IYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRS--FGYVDFFPSSHKSLSKLFSTY 73
+YV L + + DD L K FS G + + ++ G S FG+V F SS + +K +
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCF--SSPEEATKAVTEM 353
Query: 74 NGCVWKGGRLRLERAKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLL 133
NG R+ K Y+A +R+ E A L N + + AT P LL
Sbjct: 354 NG--------RIVSTKPLYVALAQRK-EERKAILTNQYM-------QRLATMRAMPGPLL 397
Query: 134 DKDKK-LNIFFPRL 146
++ N F P +
Sbjct: 398 GSFQQPANYFLPAM 411
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 5 EAEAEVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR---TKGRSFGYVDFFPS 61
E A+V E T +Y+ GE + D L ++FS+ G +V ++ + R FG+V++
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNY--G 239
Query: 62 SHKSLSKLFSTYNGCVWKGGRLRLERAKEHY--LARLKREWAEDDAQLVN 109
+H+ K S NG G + + RA++ + LKR++ + + +N
Sbjct: 240 NHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERIN 289
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR----TKGRSFGYVDFFPSSHKSLSKL 69
T IYV + +VTDD+ +F G+V + + R K R FG+V+F +SH+ SK
Sbjct: 242 TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNF--TSHEDASKA 299
Query: 70 FSTYNGCVWKGGRLRLERAKEHY 92
N + G L + RA++ +
Sbjct: 300 VQELNEKEFHGQNLYVGRAQKKH 322
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 8 AEVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK--GRSFGYVDFFPSSHKS 65
+E ++ I++GGL ++T+ D+ VFS GE+ +++VR K G+S G+ +S
Sbjct: 30 SEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRS 89
Query: 66 LSKLFSTYNGCVWKGGRLRLE 86
+NG KG +R++
Sbjct: 90 TILAVDNFNGIKIKGRTIRVD 110
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 3 KKEAEAEVEEQ----TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR---TKGRSFGY 55
KKE ++ EE T IYV + VTD+D ++F G++ + I R K R FG+
Sbjct: 214 KKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGF 273
Query: 56 VDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEHY 92
V++ H++ + N +KG +L + RA++ +
Sbjct: 274 VNYI--RHEAAAVAVDHLNDIEFKGQKLYVGRAQKKH 308
Score = 37.0 bits (84), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 16 IYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR--TKGRSFGYVDFFPSSHKSLSKLFSTY 73
+YVG L VT+ L ++FSS+G+V ++ + R RS GY +S + K
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 74 NGCVWKGGRLRL 85
N V KG R+
Sbjct: 110 NYTVIKGKPCRI 121
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 10 VEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRS----FGYVDFFPSSHKS 65
VE ++Y+G L + VT++ L FS G+V + RT G S FG+V F SS +
Sbjct: 180 VESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSF--SSEEE 237
Query: 66 LSKLFSTYNGCVWKGGRLRLERA 88
+ N V +G ++R+ +A
Sbjct: 238 VEAAIQALNNSVLEGQKIRVNKA 260
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
Query: 5 EAEAEVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR---TKGRSFGYVDFFPS 61
E A+V E T +Y+ GE + D L ++FS+ G +V ++ + R FG+V++
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNY--G 239
Query: 62 SHKSLSKLFSTYNG------CVWKG-GRLRLERAKEHYLARLKREWAEDDAQLVN 109
+H+ K + NG V+ G + R+ER E LKR++ + + +N
Sbjct: 240 NHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGE-----LKRKFEQIKQERIN 289
Score = 33.1 bits (74), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 21/134 (15%)
Query: 16 IYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRS--FGYVDFFPSSHKSLSKLFSTY 73
+YV L + + DD L K FS G + + ++ G S FG+V F SS + +K +
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCF--SSPEEATKAVTEM 353
Query: 74 NGCVWKGGRLRLERAKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLL 133
NG R+ K Y+A +R+ E A L N + + AT P LL
Sbjct: 354 NG--------RIVSTKPLYVALAQRK-EERKAILTNQYM-------QRLATMRAMPGPLL 397
Query: 134 DKDKK-LNIFFPRL 146
++ N F P +
Sbjct: 398 GSFQQPANYFLPTM 411
>sp|Q6NZZ9|RBM22_DANRE Pre-mRNA-splicing factor RBM22 OS=Danio rerio GN=rbm22 PE=2 SV=1
Length = 425
Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSF 53
T +Y+GGLGE VTD +L F GE++ + IV+ + +F
Sbjct: 232 TTLYIGGLGENVTDSELRNHFYQFGEIRTITIVQRQQCAF 271
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 1 MEKKEAEAEVEEQ----TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR---TKGRSF 53
+ +KE +A++EE T +Y + +VTDD+ K+F+ G++ + + R K + F
Sbjct: 210 IPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGF 269
Query: 54 GYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKE 90
G+V+F H K + +KG +L + RA++
Sbjct: 270 GFVNF--EDHNEAQKAVDELHDSDFKGQKLFVARAQK 304
Score = 34.7 bits (78), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 8 AEVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR--TKGRSFG--YVDFF 59
A+ T +YVG L VT+ L ++FS +G V ++ + R RS G YV+F
Sbjct: 41 ADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFL 96
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 1 MEKKEAEAEVEEQ----TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR----TKGRS 52
+ KK+ +++ EE T +YV + + T+++ +F GE+ + + R K R
Sbjct: 219 IAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRG 278
Query: 53 FGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEHY 92
FG+V+F +SH + + N +KG +L + RA++ +
Sbjct: 279 FGFVNF--TSHDNAAAAVEALNDKDFKGQKLYVGRAQKKH 316
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR---TKGRSFGYVDFFPSSHKSLSKLF 70
T +Y+ L ++T+ + + +F GE+ ++ +V+ K R FG+V++ ++H+ K
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNY--ANHECAQKAV 318
Query: 71 STYNGCVWKGGRLRLERAKEHY 92
N +KG +L + RA++ +
Sbjct: 319 DELNDKEYKGKKLYVGRAQKKH 340
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 42.4 bits (98), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDF--FPSSHKSLSKL 69
T I V L + VT+++L K FS LGEV V I TKG +GYV F PS+ +++ ++
Sbjct: 237 TTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKG--YGYVQFKTRPSAEEAVQRM 292
Score = 42.0 bits (97), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 20/159 (12%)
Query: 10 VEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK----GRSFGYVDFFPSSHKS 65
+EE +++G L V ++ L FS GE+ +V ++R K +G+++F SH +
Sbjct: 20 LEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFI--SHAA 77
Query: 66 LSKLFSTYNGCVWKGGRLRLERAKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATR 125
+ TYNG G L + + K + D + V +APD D
Sbjct: 78 AERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVG-----DLAPDVTD--- 129
Query: 126 LDTPKKLLDKDKKLNIFFPRLRKVKTLPFCGTGKHKYSF 164
LL + +++ R KV T P G K Y F
Sbjct: 130 -----YLLQETFRVHYSSVRGAKVVTDPSTGRSK-GYGF 162
>sp|Q4V7D7|RBM22_RAT Pre-mRNA-splicing factor RBM22 OS=Rattus norvegicus GN=Rbm22 PE=2
SV=1
Length = 420
Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFP------SSHKSLS 67
T +YVGGLG+ +T+ DL F GE++ V +V+ + +F + F ++ KS +
Sbjct: 232 TTLYVGGLGDTITETDLRNHFYQFGEIRTVTVVQRQQCAF--IQFATRQAAEVAAEKSFN 289
Query: 68 KLFSTYNGCVWKGGRLRLERAKE 90
KL K GR + R KE
Sbjct: 290 KLIVNGRRLNVKWGRSQAARGKE 312
>sp|Q5ZM16|RBM22_CHICK Pre-mRNA-splicing factor RBM22 OS=Gallus gallus GN=RBM22 PE=2 SV=1
Length = 420
Score = 42.0 bits (97), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFP------SSHKSLS 67
T +YVGGLG+ +T+ DL F GE++ + +V+ + +F + F ++ KS +
Sbjct: 232 TTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAF--IQFATRQAAEVAAEKSFN 289
Query: 68 KLFSTYNGCVWKGGRLRLERAKE 90
KL K GR + R KE
Sbjct: 290 KLIVNGRRLNVKWGRSQAARGKE 312
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 42.0 bits (97), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 1 MEKKEAEAEVEEQ----TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR---TKGRSF 53
+ KK+ +++ EE T +Y+ L ++ DD+ K+F GE+ + + R K R F
Sbjct: 218 ISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGF 277
Query: 54 GYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEHY 92
G+V+F S+H+S N + +L + RA++ +
Sbjct: 278 GFVNF--STHESAQAAVEEMNDKEIRSQKLYVGRAQKKH 314
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3
OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 41.6 bits (96), Expect = 0.022, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFS 71
E ++YVG L V + ++ +F G +K VDI +G +F +V+F H+
Sbjct: 7 EDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEF--EDHRDAEDAVR 64
Query: 72 TYNGCVWKGGRLRLE 86
+G + G R+R+E
Sbjct: 65 ARDGYEFDGRRIRVE 79
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 41.6 bits (96), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 1 MEKKEAEAEVEEQ----TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT---KGRSF 53
+ KKE E++ EE T +Y+ + + TD + ++ + G+ +V + RT + + F
Sbjct: 199 LSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGF 258
Query: 54 GYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEHY 92
G+V+F +H+ K N +KG L + RA++ Y
Sbjct: 259 GFVNF--VNHEDAVKCVEELNNTEFKGQPLYVNRAQKKY 295
>sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpE PE=3 SV=3
Length = 99
Score = 41.2 bits (95), Expect = 0.035, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 16 IYVGGLGEKVTDDDLAKVFSSLGEVKAVDIV--RTKG--RSFGYVDFFPSSHKSLSKLFS 71
IYVG L VT DDL KVFS G V V + R G R FG+V+ S+ + +
Sbjct: 3 IYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAA--IQ 60
Query: 72 TYNGCVWKGGRLRLERAK 89
+G W G L++ +A+
Sbjct: 61 ALDGAEWMGRVLKVNKAR 78
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 40.8 bits (94), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 3 KKEAEAEV----EEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIV---RTKGRSFGY 55
+KE EAE+ +E T +Y+ GE + D+ L ++F G +V ++ K + FG+
Sbjct: 176 RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGF 235
Query: 56 VDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKE 90
V F H+ K NG G ++ + RA++
Sbjct: 236 VSF--ERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 37.0 bits (84), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 16 IYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRS--FGYVDFFPSSHKSLSKLFSTY 73
+YV L + + D+ L K FS G + + ++ GRS FG+V F SS + +K +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCF--SSPEEATKAVTEM 353
Query: 74 NGCVWKGGRLRLERAKEHYLARLKREWAEDDAQLVN 109
NG R+ K Y+A +R+ E A L N
Sbjct: 354 NG--------RIVATKPLYVALAQRK-EERQAHLTN 380
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 40.8 bits (94), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDI---VRTKGRSFGYVDFFPSSHKSLSKLF 70
T IYV + + TD++ ++FS GE+ + + K + FG+V+F H + +K
Sbjct: 231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNF--VDHNAAAKAV 288
Query: 71 STYNGCVWKGGRLRLERAKEHY--LARLKREW 100
NG +K L + RA++ Y LK+++
Sbjct: 289 EELNGKEFKSQALYVGRAQKKYERAEELKKQY 320
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 40.8 bits (94), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 3 KKEAEAEV----EEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIV---RTKGRSFGY 55
+KE EAE+ +E T +Y+ GE + D+ L ++F G +V ++ K + FG+
Sbjct: 176 RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGF 235
Query: 56 VDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKE 90
V F H+ K NG G ++ + RA++
Sbjct: 236 VSF--ERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 36.6 bits (83), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 16 IYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRS--FGYVDFFPSSHKSLSKLFSTY 73
+YV L + + D+ L K FS G + + ++ GRS FG+V F SS + +K +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCF--SSPEEATKAVTEM 353
Query: 74 NGCVWKGGRLRLERAKEHYLARLKREWAEDDAQLVN 109
NG R+ K Y+A +R+ E A L N
Sbjct: 354 NG--------RIVATKPLYVALAQRK-EERQAHLTN 380
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 40.4 bits (93), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 16 IYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNG 75
I+VGG+ V D+DL + FS GEV +V I KG G+V F + KS + NG
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKG--CGFVQF--ADRKSAEDAIESLNG 378
Query: 76 CVWKGGRLRLERAKEHYLARLKREWAEDDAQLVN 109
V +RL + ++W D Q N
Sbjct: 379 TVIGKNTVRLSWGRS-----PNKQWRGDSGQQWN 407
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 40.4 bits (93), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 1 MEKKEAEAEVEEQ----TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR---TKGRSF 53
+ KK+ +++ EE T IY+ + +V D++ K+F GE+ + + R K R F
Sbjct: 206 ISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGF 265
Query: 54 GYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEHY 92
G+V+F S+H+S N + +L + RA++ +
Sbjct: 266 GFVNF--STHESAQAAVEEMNDKEVRSQKLYVGRAQKKH 302
Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 10/76 (13%)
Query: 16 IYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR--TKGRSFG--YVDFFPSSH--KSLSKL 69
+YVG L VT+ L ++FSS+G+V ++ + R RS G YV++ ++H ++L +L
Sbjct: 44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103
Query: 70 FSTYNGCVWKGGRLRL 85
N + KG R+
Sbjct: 104 ----NYTLIKGKPCRI 115
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 40.4 bits (93), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 3 KKEAEAEV----EEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIV---RTKGRSFGY 55
+KE EAE+ +E T +Y+ GE + D+ L +F G +V ++ K + FG+
Sbjct: 176 RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGF 235
Query: 56 VDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKE 90
V F H+ K NG G ++ + RA++
Sbjct: 236 VSF--ERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 37.0 bits (84), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 16 IYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRS--FGYVDFFPSSHKSLSKLFSTY 73
+YV L + + D+ L K FS G + + ++ GRS FG+V F SS + +K +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCF--SSPEEATKAVTEM 353
Query: 74 NGCVWKGGRLRLERAKEHYLARLKREWAEDDAQLVN 109
NG R+ K Y+A +R+ E A L N
Sbjct: 354 NG--------RIVATKPLYVALAQRK-EERQAHLTN 380
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 40.4 bits (93), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 3 KKEAEAEV----EEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIV---RTKGRSFGY 55
+KE EAE+ +E T +Y+ GE + D+ L +F G +V ++ K + FG+
Sbjct: 176 RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGF 235
Query: 56 VDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKE 90
V F H+ K NG G ++ + RA++
Sbjct: 236 VSF--ERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 37.0 bits (84), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 16 IYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRS--FGYVDFFPSSHKSLSKLFSTY 73
+YV L + + D+ L K FS G + + ++ GRS FG+V F SS + +K +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCF--SSPEEATKAVTEM 353
Query: 74 NGCVWKGGRLRLERAKEHYLARLKREWAEDDAQLVN 109
NG R+ K Y+A +R+ E A L N
Sbjct: 354 NG--------RIVATKPLYVALAQRK-EERQAHLTN 380
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 40.4 bits (93), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 3 KKEAEAEV----EEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIV---RTKGRSFGY 55
+KE EAE+ +E T +Y+ GE + D+ L +F G +V ++ K + FG+
Sbjct: 176 RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGF 235
Query: 56 VDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKE 90
V F H+ K NG G ++ + RA++
Sbjct: 236 VSF--ERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 37.0 bits (84), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 16 IYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRS--FGYVDFFPSSHKSLSKLFSTY 73
+YV L + + D+ L K FS G + + ++ GRS FG+V F SS + +K +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCF--SSPEEATKAVTEM 353
Query: 74 NGCVWKGGRLRLERAKEHYLARLKREWAEDDAQLVN 109
NG R+ K Y+A +R+ E A L N
Sbjct: 354 NG--------RIVATKPLYVALAQRK-EERQAHLTN 380
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 40.0 bits (92), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 1 MEKKEAEAEVEEQ----TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR---TKGRSF 53
+ KK+ +++ EE T +Y+ L +++++++ ++F GE+ + + R K R F
Sbjct: 212 ISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGF 271
Query: 54 GYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEHY 92
G+V++ S+H S N KG +L + RA++ +
Sbjct: 272 GFVNY--STHDSAQAAVDEMNDKEVKGQKLYVGRAQKKH 308
>sp|Q44556|RBPD_NOSS1 Putative RNA-binding protein RbpD OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpD PE=3 SV=3
Length = 94
Score = 39.7 bits (91), Expect = 0.10, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 16 IYVGGLGEKVTDDDLAKVFSSLGEVKAV----DIVRTKGRSFGYVDFFPSSHKSLSKLFS 71
IYVG L + T+ DL VF+ GEVK V D + R F +V+ + + + +
Sbjct: 3 IYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAA--IT 60
Query: 72 TYNGCVWKGGRLRLERAK 89
+G W G +LR+ +AK
Sbjct: 61 ELDGAEWMGRQLRVNKAK 78
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 20/134 (14%)
Query: 1 MEKKEAEAEVEEQ----TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR---TKGRSF 53
+ KK+ +++ EE T +Y+ + + VT+++ ++F GE+ + + R K R F
Sbjct: 213 ISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGF 272
Query: 54 GYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA-----------KEHYLARLKREWAE 102
G+V+F S+H+S N + +L + RA K++ ARL++
Sbjct: 273 GFVNF--STHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKY 330
Query: 103 DDAQLVNPPVTDSV 116
L +TD V
Sbjct: 331 QGVNLYVKNLTDDV 344
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 8 AEVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKG 50
A+ ++ ++VGG+ +T+ DL VF+ GEV V++VR KG
Sbjct: 30 AKFKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKG 72
>sp|Q44560|RBPA_NOSS1 Putative RNA-binding protein RbpA OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpA PE=3 SV=3
Length = 102
Score = 38.1 bits (87), Expect = 0.31, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 16 IYVGGLGEKVTDDDLAKVFSSLGEVKAVDIV--RTKG--RSFGYVDFFPSSHKSLSKLFS 71
IYVG L +VT D L+ VF+ G VK V + R G R FG+V+ S +
Sbjct: 3 IYVGNLSYEVTQDTLSAVFAEYGTVKRVQLPTDRETGQPRGFGFVEM--GSEAEEAAAIE 60
Query: 72 TYNGCVWKGGRLRLERAK 89
+G W G L++ +AK
Sbjct: 61 ALDGAEWMGRDLKVNKAK 78
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 37.7 bits (86), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR---TKGRSFGYVDFFPSSHKS 65
T IY+ + VT+++ K+F GE+ + + R K R FG+V++ S+H+S
Sbjct: 232 TNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNY--STHES 284
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 16 IYVGGLGEKVTDDDLAKVFSSLGEVKAVDIV------RTKGRSFGYVDF 58
++VG L T+DDL+ F G+++++ + R KG FGYV F
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKG--FGYVTF 414
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.124 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 297,788,205
Number of Sequences: 539616
Number of extensions: 12894957
Number of successful extensions: 39667
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 936
Number of HSP's that attempted gapping in prelim test: 37135
Number of HSP's gapped (non-prelim): 2670
length of query: 800
length of database: 191,569,459
effective HSP length: 126
effective length of query: 674
effective length of database: 123,577,843
effective search space: 83291466182
effective search space used: 83291466182
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 65 (29.6 bits)