Query 003717
Match_columns 800
No_of_seqs 346 out of 1634
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 04:40:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03213 repressor of silencin 100.0 4E-101 9E-106 830.3 29.7 346 12-424 9-360 (759)
2 PLN03213 repressor of silencin 100.0 5.8E-35 1.3E-39 317.6 4.7 135 437-587 219-359 (759)
3 TIGR01659 sex-lethal sex-letha 99.8 3E-19 6.4E-24 191.9 12.9 164 11-211 105-276 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 3.5E-18 7.5E-23 178.0 13.5 147 13-195 3-157 (352)
5 KOG0131 Splicing factor 3b, su 99.7 1.8E-18 3.8E-23 171.9 7.6 154 9-197 5-167 (203)
6 TIGR01645 half-pint poly-U bin 99.7 8.5E-18 1.8E-22 191.7 11.2 170 11-208 105-282 (612)
7 TIGR01628 PABP-1234 polyadenyl 99.7 1.3E-16 2.9E-21 178.1 11.9 147 15-195 2-155 (562)
8 TIGR01622 SF-CC1 splicing fact 99.7 2.8E-16 6.1E-21 170.1 14.0 168 12-207 88-263 (457)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.5E-16 5.3E-21 164.3 12.9 172 12-196 88-338 (352)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 6.5E-16 1.4E-20 171.2 12.4 173 12-198 274-465 (481)
11 TIGR01628 PABP-1234 polyadenyl 99.6 1.1E-15 2.3E-20 170.9 13.1 176 12-208 177-362 (562)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.3E-15 2.8E-20 168.8 12.7 157 13-196 2-161 (481)
13 KOG0127 Nucleolar protein fibr 99.6 2E-15 4.3E-20 167.9 9.1 170 13-195 5-184 (678)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.6 4.2E-15 9E-20 162.9 10.7 173 12-195 294-490 (509)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.6 3.9E-15 8.5E-20 163.1 10.4 178 11-207 173-372 (509)
16 KOG0148 Apoptosis-promoting RN 99.5 1.5E-14 3.2E-19 151.0 9.1 164 10-195 59-226 (321)
17 KOG4205 RNA-binding protein mu 99.5 8.9E-15 1.9E-19 156.0 7.1 167 12-212 5-178 (311)
18 TIGR01622 SF-CC1 splicing fact 99.5 5.6E-14 1.2E-18 152.4 12.7 75 13-89 186-264 (457)
19 PLN03134 glycine-rich RNA-bind 99.5 1.1E-13 2.5E-18 132.3 11.1 78 12-91 33-114 (144)
20 TIGR01648 hnRNP-R-Q heterogene 99.5 1.8E-13 3.8E-18 156.1 12.3 180 12-211 57-308 (578)
21 KOG0144 RNA-binding protein CU 99.4 1.3E-13 2.9E-18 150.5 7.0 164 12-210 33-206 (510)
22 KOG0145 RNA-binding protein EL 99.4 3.6E-13 7.9E-18 140.2 8.5 145 13-193 41-193 (360)
23 PF00076 RRM_1: RNA recognitio 99.4 9.1E-13 2E-17 106.1 8.5 67 16-84 1-70 (70)
24 KOG0117 Heterogeneous nuclear 99.4 4.7E-13 1E-17 146.7 9.0 160 13-211 164-332 (506)
25 KOG0125 Ataxin 2-binding prote 99.4 4E-13 8.7E-18 143.1 7.7 87 5-93 88-176 (376)
26 KOG0124 Polypyrimidine tract-b 99.4 3.9E-13 8.5E-18 144.6 6.5 157 13-196 113-284 (544)
27 KOG0109 RNA-binding protein LA 99.3 3.9E-12 8.6E-17 134.1 8.8 133 14-193 3-136 (346)
28 PLN03120 nucleic acid binding 99.3 1.2E-11 2.6E-16 129.4 10.3 75 13-90 4-79 (260)
29 KOG0123 Polyadenylate-binding 99.3 1.3E-11 2.8E-16 134.5 10.5 153 14-195 77-234 (369)
30 KOG0127 Nucleolar protein fibr 99.2 3.1E-11 6.7E-16 135.1 10.5 187 13-211 117-379 (678)
31 KOG0145 RNA-binding protein EL 99.2 2.1E-11 4.5E-16 127.4 8.6 175 10-196 124-347 (360)
32 KOG0110 RNA-binding protein (R 99.2 1.2E-11 2.7E-16 141.2 7.3 156 14-194 516-680 (725)
33 PF14259 RRM_6: RNA recognitio 99.2 5.8E-11 1.3E-15 97.5 9.0 67 16-84 1-70 (70)
34 smart00362 RRM_2 RNA recogniti 99.2 8.1E-11 1.7E-15 92.3 9.3 70 15-86 1-72 (72)
35 KOG0123 Polyadenylate-binding 99.2 3.1E-11 6.7E-16 131.6 9.2 138 14-196 2-142 (369)
36 COG0724 RNA-binding proteins ( 99.2 9E-11 2E-15 111.1 10.0 76 13-90 115-194 (306)
37 KOG0149 Predicted RNA-binding 99.2 3.4E-11 7.3E-16 124.1 6.9 74 13-89 12-89 (247)
38 TIGR01645 half-pint poly-U bin 99.2 7.8E-11 1.7E-15 135.4 10.5 78 12-91 203-284 (612)
39 TIGR01648 hnRNP-R-Q heterogene 99.2 1.2E-10 2.6E-15 133.3 11.6 75 12-92 232-308 (578)
40 KOG0121 Nuclear cap-binding pr 99.2 4.5E-11 9.7E-16 114.5 6.6 81 7-89 30-114 (153)
41 TIGR01659 sex-lethal sex-letha 99.1 1.3E-10 2.8E-15 125.7 10.0 78 12-91 192-275 (346)
42 KOG0122 Translation initiation 99.1 1.4E-10 2.9E-15 120.3 9.0 81 9-91 185-269 (270)
43 KOG0107 Alternative splicing f 99.1 1.1E-10 2.3E-15 116.5 7.8 79 11-92 8-86 (195)
44 KOG4207 Predicted splicing fac 99.1 7.5E-11 1.6E-15 120.1 6.6 85 4-90 4-92 (256)
45 KOG0111 Cyclophilin-type pepti 99.1 4.7E-11 1E-15 122.5 4.5 78 12-91 9-90 (298)
46 smart00360 RRM RNA recognition 99.1 4.4E-10 9.5E-15 87.6 8.1 67 18-86 1-71 (71)
47 PLN03121 nucleic acid binding 99.1 4.2E-10 9.2E-15 116.8 10.2 75 12-89 4-79 (243)
48 cd00590 RRM RRM (RNA recogniti 99.1 1E-09 2.3E-14 86.4 9.4 71 15-87 1-74 (74)
49 KOG0144 RNA-binding protein CU 99.0 3.2E-10 6.9E-15 124.6 5.1 87 4-92 112-207 (510)
50 KOG0114 Predicted RNA-binding 99.0 4.9E-09 1.1E-13 97.8 10.7 77 13-91 18-95 (124)
51 PF13893 RRM_5: RNA recognitio 99.0 3.4E-09 7.4E-14 84.9 8.4 56 30-88 1-56 (56)
52 KOG0126 Predicted RNA-binding 98.9 3.2E-10 6.9E-15 113.8 1.8 77 11-89 33-113 (219)
53 KOG0117 Heterogeneous nuclear 98.9 2.2E-09 4.8E-14 118.4 7.8 78 12-95 258-335 (506)
54 KOG0113 U1 small nuclear ribon 98.9 3.8E-09 8.1E-14 112.2 9.1 79 11-91 99-181 (335)
55 KOG0105 Alternative splicing f 98.9 2.1E-09 4.5E-14 108.4 6.7 77 12-90 5-82 (241)
56 KOG0148 Apoptosis-promoting RN 98.9 4.2E-09 9.2E-14 110.8 9.1 76 12-91 163-238 (321)
57 KOG0108 mRNA cleavage and poly 98.9 5.3E-09 1.2E-13 116.5 8.6 77 14-92 19-99 (435)
58 KOG4206 Spliceosomal protein s 98.8 1.6E-08 3.4E-13 104.0 9.4 81 9-91 5-90 (221)
59 KOG0130 RNA-binding protein RB 98.7 1.3E-08 2.9E-13 98.7 6.2 76 12-89 71-150 (170)
60 KOG0147 Transcriptional coacti 98.7 1.1E-08 2.3E-13 115.2 5.0 157 13-193 179-344 (549)
61 smart00361 RRM_1 RNA recogniti 98.6 9.2E-08 2E-12 80.6 7.8 57 27-85 2-69 (70)
62 KOG0106 Alternative splicing f 98.6 3.3E-08 7.2E-13 101.6 5.4 150 14-196 2-160 (216)
63 KOG0147 Transcriptional coacti 98.6 5.4E-08 1.2E-12 109.7 6.2 75 14-90 279-357 (549)
64 KOG0109 RNA-binding protein LA 98.6 4.3E-08 9.3E-13 104.2 5.1 74 12-91 77-150 (346)
65 KOG4661 Hsp27-ERE-TATA-binding 98.5 9.5E-08 2.1E-12 108.0 6.5 77 13-91 405-485 (940)
66 KOG0153 Predicted RNA-binding 98.5 1.9E-07 4.1E-12 101.0 8.0 80 7-90 222-302 (377)
67 KOG0110 RNA-binding protein (R 98.5 1.1E-07 2.3E-12 109.8 6.1 79 13-93 613-695 (725)
68 KOG0146 RNA-binding protein ET 98.5 1.9E-07 4.2E-12 98.5 7.2 89 1-91 5-101 (371)
69 KOG0132 RNA polymerase II C-te 98.5 2E-07 4.4E-12 108.3 7.2 75 13-91 421-495 (894)
70 KOG0146 RNA-binding protein ET 98.4 1.7E-07 3.7E-12 98.9 4.2 80 11-92 283-366 (371)
71 KOG1457 RNA binding protein (c 98.4 1.6E-06 3.6E-11 89.9 11.1 80 10-91 31-118 (284)
72 KOG0415 Predicted peptidyl pro 98.4 4.4E-07 9.6E-12 98.6 6.6 78 12-91 238-319 (479)
73 KOG0131 Splicing factor 3b, su 98.3 4.7E-07 1E-11 91.4 5.2 81 9-91 92-177 (203)
74 KOG0124 Polypyrimidine tract-b 98.3 6.2E-07 1.3E-11 97.7 6.4 79 9-89 206-288 (544)
75 KOG4205 RNA-binding protein mu 98.3 9.6E-07 2.1E-11 95.2 5.8 77 13-92 97-177 (311)
76 KOG0151 Predicted splicing reg 98.2 2E-06 4.4E-11 99.5 6.6 78 11-90 172-256 (877)
77 KOG4212 RNA-binding protein hn 98.2 4.2E-06 9.2E-11 93.0 8.3 74 14-89 45-122 (608)
78 KOG4208 Nucleolar RNA-binding 98.1 4.1E-06 8.9E-11 85.9 7.0 78 12-91 48-130 (214)
79 KOG1548 Transcription elongati 98.1 1.1E-05 2.4E-10 87.7 10.4 78 10-89 131-219 (382)
80 KOG4211 Splicing factor hnRNP- 98.1 1.3E-05 2.9E-10 90.1 10.2 154 9-191 6-164 (510)
81 KOG4212 RNA-binding protein hn 98.0 8.7E-06 1.9E-10 90.6 6.6 77 9-88 532-608 (608)
82 KOG0533 RRM motif-containing p 98.0 1.7E-05 3.7E-10 83.3 7.7 77 13-91 83-162 (243)
83 KOG0120 Splicing factor U2AF, 97.9 5.2E-06 1.1E-10 94.3 3.6 178 12-197 288-482 (500)
84 KOG0116 RasGAP SH3 binding pro 97.9 1.9E-05 4E-10 88.4 7.0 77 13-92 288-368 (419)
85 KOG1190 Polypyrimidine tract-b 97.8 7.9E-05 1.7E-09 82.7 10.1 160 13-190 297-473 (492)
86 KOG0226 RNA-binding proteins [ 97.8 3.2E-05 6.9E-10 81.6 5.4 78 11-90 188-269 (290)
87 KOG4454 RNA binding protein (R 97.7 1.8E-05 3.8E-10 82.2 1.8 73 14-88 10-84 (267)
88 KOG4660 Protein Mei2, essentia 97.6 3E-05 6.4E-10 88.3 3.3 70 12-84 74-143 (549)
89 KOG4209 Splicing factor RNPS1, 97.6 0.0001 2.2E-09 76.8 6.3 76 12-90 100-179 (231)
90 KOG1190 Polypyrimidine tract-b 97.6 9.7E-05 2.1E-09 82.0 5.8 176 12-205 27-221 (492)
91 COG5175 MOT2 Transcriptional r 97.0 0.0013 2.9E-08 72.0 6.7 80 13-94 114-206 (480)
92 KOG1457 RNA binding protein (c 96.9 0.00081 1.8E-08 70.5 4.3 67 11-79 208-274 (284)
93 KOG0129 Predicted RNA-binding 96.9 0.001 2.2E-08 75.8 5.2 168 12-197 258-438 (520)
94 PF04059 RRM_2: RNA recognitio 96.7 0.0079 1.7E-07 55.7 8.4 75 14-90 2-86 (97)
95 KOG4210 Nuclear localization s 96.7 0.001 2.2E-08 71.4 2.7 77 12-91 183-264 (285)
96 KOG4210 Nuclear localization s 96.6 0.0024 5.2E-08 68.5 4.7 152 12-187 87-245 (285)
97 PLN03134 glycine-rich RNA-bind 96.6 0.0013 2.9E-08 63.6 2.5 75 122-210 36-114 (144)
98 KOG4206 Spliceosomal protein s 96.4 0.0094 2E-07 62.3 7.6 77 10-89 143-220 (221)
99 PF08777 RRM_3: RNA binding mo 96.2 0.0084 1.8E-07 55.7 5.5 70 14-87 2-76 (105)
100 PF11608 Limkain-b1: Limkain b 96.2 0.012 2.5E-07 54.0 6.2 68 14-89 3-75 (90)
101 KOG0226 RNA-binding proteins [ 96.2 0.0015 3.3E-08 69.4 0.7 155 13-197 96-260 (290)
102 KOG0106 Alternative splicing f 96.1 0.004 8.6E-08 64.9 2.9 70 13-88 99-168 (216)
103 KOG0149 Predicted RNA-binding 96.0 0.0021 4.5E-08 67.6 0.6 63 117-190 9-75 (247)
104 KOG1456 Heterogeneous nuclear 96.0 0.037 8E-07 61.8 9.9 172 12-200 286-478 (494)
105 KOG0112 Large RNA-binding prot 95.8 0.0045 9.7E-08 74.3 2.0 148 10-197 369-519 (975)
106 KOG1548 Transcription elongati 95.4 0.042 9.2E-07 60.7 7.5 77 10-88 262-349 (382)
107 PF00076 RRM_1: RNA recognitio 95.3 0.0071 1.5E-07 48.7 1.0 58 129-196 6-66 (70)
108 KOG0112 Large RNA-binding prot 95.3 0.017 3.6E-07 69.7 4.4 80 9-92 451-532 (975)
109 KOG0120 Splicing factor U2AF, 95.0 0.053 1.1E-06 62.6 7.4 61 28-90 424-491 (500)
110 KOG3152 TBP-binding protein, a 94.6 0.021 4.6E-07 60.9 2.7 69 12-82 73-157 (278)
111 KOG0128 RNA-binding protein SA 94.4 0.0059 1.3E-07 73.0 -2.3 125 11-190 665-795 (881)
112 KOG4849 mRNA cleavage factor I 94.3 0.05 1.1E-06 60.3 4.7 82 14-97 81-168 (498)
113 KOG2193 IGF-II mRNA-binding pr 94.3 0.05 1.1E-06 61.5 4.7 149 14-205 2-155 (584)
114 KOG1995 Conserved Zn-finger pr 94.1 0.052 1.1E-06 60.1 4.2 80 10-91 63-154 (351)
115 KOG4211 Splicing factor hnRNP- 93.9 0.12 2.5E-06 59.4 6.7 75 14-91 104-182 (510)
116 KOG1456 Heterogeneous nuclear 93.3 0.27 5.9E-06 55.2 8.0 73 18-93 127-201 (494)
117 smart00361 RRM_1 RNA recogniti 93.2 0.045 9.9E-07 46.3 1.6 51 137-196 3-64 (70)
118 smart00360 RRM RNA recognition 93.0 0.071 1.5E-06 41.3 2.3 55 130-194 5-63 (71)
119 KOG0122 Translation initiation 92.9 0.058 1.3E-06 57.5 2.1 59 129-197 197-259 (270)
120 KOG2314 Translation initiation 92.6 0.14 3.1E-06 59.7 4.9 72 13-86 58-139 (698)
121 PF14605 Nup35_RRM_2: Nup53/35 92.5 0.28 6E-06 40.6 5.2 52 14-70 2-53 (53)
122 KOG4676 Splicing factor, argin 92.4 0.2 4.3E-06 56.5 5.5 72 14-88 8-86 (479)
123 KOG0129 Predicted RNA-binding 92.3 0.26 5.7E-06 56.9 6.5 61 10-72 367-432 (520)
124 PF13893 RRM_5: RNA recognitio 92.1 0.071 1.5E-06 42.7 1.3 46 139-194 1-46 (56)
125 PF08952 DUF1866: Domain of un 92.1 0.55 1.2E-05 46.8 7.6 80 13-99 27-115 (146)
126 PF05172 Nup35_RRM: Nup53/35/4 91.9 0.88 1.9E-05 42.6 8.3 73 14-90 7-91 (100)
127 KOG1855 Predicted RNA-binding 91.8 0.17 3.7E-06 57.4 4.2 62 12-75 230-308 (484)
128 KOG2202 U2 snRNP splicing fact 91.5 0.092 2E-06 56.2 1.6 59 28-88 83-145 (260)
129 KOG4307 RNA binding protein RB 91.2 0.53 1.1E-05 56.3 7.4 72 14-87 868-943 (944)
130 PF14259 RRM_6: RNA recognitio 90.9 0.12 2.5E-06 42.6 1.4 58 129-196 6-66 (70)
131 COG0724 RNA-binding proteins ( 90.6 0.14 3E-06 49.0 1.8 71 122-206 117-191 (306)
132 PLN03120 nucleic acid binding 90.4 0.14 2.9E-06 55.1 1.7 70 123-207 7-77 (260)
133 KOG2416 Acinus (induces apopto 90.0 0.33 7.2E-06 57.0 4.5 79 12-94 443-525 (718)
134 smart00362 RRM_2 RNA recogniti 89.9 0.21 4.6E-06 38.9 2.1 55 130-194 8-64 (72)
135 KOG0105 Alternative splicing f 89.6 0.83 1.8E-05 47.6 6.5 66 9-79 111-176 (241)
136 KOG2068 MOT2 transcription fac 89.4 0.16 3.5E-06 56.0 1.3 82 14-97 78-169 (327)
137 KOG1996 mRNA splicing factor [ 89.0 0.9 2E-05 50.0 6.5 60 28-89 301-365 (378)
138 KOG4207 Predicted splicing fac 88.9 0.17 3.7E-06 53.2 1.0 49 137-194 28-80 (256)
139 PLN03121 nucleic acid binding 88.5 0.24 5.3E-06 52.8 1.8 58 129-197 13-71 (243)
140 KOG1365 RNA-binding protein Fu 87.7 0.68 1.5E-05 52.3 4.7 79 13-93 280-364 (508)
141 KOG0128 RNA-binding protein SA 87.4 0.27 5.9E-06 59.5 1.6 76 13-90 736-814 (881)
142 KOG0113 U1 small nuclear ribon 86.6 0.3 6.6E-06 53.5 1.3 62 122-194 103-168 (335)
143 KOG0115 RNA-binding protein p5 85.9 0.77 1.7E-05 49.5 3.8 71 14-86 32-109 (275)
144 KOG4208 Nucleolar RNA-binding 85.2 0.46 1E-05 49.7 1.7 90 128-236 56-150 (214)
145 KOG4307 RNA binding protein RB 84.7 0.89 1.9E-05 54.5 3.9 77 13-91 434-514 (944)
146 PF03880 DbpA: DbpA RNA bindin 83.9 1 2.2E-05 39.1 3.1 67 15-88 2-74 (74)
147 KOG0130 RNA-binding protein RB 83.0 0.4 8.6E-06 47.8 0.2 51 137-196 87-141 (170)
148 KOG0125 Ataxin 2-binding prote 82.7 1.1 2.4E-05 49.8 3.4 57 129-195 104-162 (376)
149 PF04847 Calcipressin: Calcipr 82.0 4.1 8.9E-05 41.8 6.9 61 27-91 9-71 (184)
150 KOG0111 Cyclophilin-type pepti 81.4 0.47 1E-05 50.4 0.1 60 127-196 16-79 (298)
151 KOG0126 Predicted RNA-binding 80.1 0.91 2E-05 47.2 1.6 61 123-196 38-104 (219)
152 KOG0108 mRNA cleavage and poly 79.5 1.2 2.5E-05 51.2 2.3 60 127-196 24-87 (435)
153 KOG1365 RNA-binding protein Fu 76.6 6.5 0.00014 44.9 6.9 68 15-85 163-237 (508)
154 KOG2253 U1 snRNP complex, subu 76.2 1.2 2.6E-05 53.0 1.3 68 13-87 40-107 (668)
155 PF03467 Smg4_UPF3: Smg-4/UPF3 75.7 5.6 0.00012 40.3 5.6 74 13-88 7-95 (176)
156 PF08675 RNA_bind: RNA binding 75.3 13 0.00027 34.7 7.2 53 15-74 11-63 (87)
157 KOG0114 Predicted RNA-binding 73.5 2.3 4.9E-05 41.1 2.1 63 125-197 22-85 (124)
158 PF10309 DUF2414: Protein of u 72.1 14 0.00031 32.2 6.4 55 13-73 5-62 (62)
159 KOG4365 Uncharacterized conser 71.1 2.8 6E-05 48.3 2.5 87 14-103 4-94 (572)
160 KOG0107 Alternative splicing f 70.2 2.4 5.2E-05 43.9 1.6 58 129-197 18-75 (195)
161 PF15023 DUF4523: Protein of u 65.2 14 0.0003 37.6 5.6 72 12-89 85-160 (166)
162 cd00590 RRM RRM (RNA recogniti 62.9 4.8 0.0001 31.4 1.7 56 129-194 7-65 (74)
163 KOG4660 Protein Mei2, essentia 61.0 2.5 5.4E-05 49.6 -0.3 58 129-197 83-140 (549)
164 PF07576 BRAP2: BRCA1-associat 59.9 46 0.001 31.8 7.9 65 13-79 13-80 (110)
165 KOG4285 Mitotic phosphoprotein 58.9 15 0.00033 40.9 5.1 68 16-89 200-268 (350)
166 KOG4574 RNA-binding protein (c 56.5 6.7 0.00015 48.3 2.1 73 15-91 300-374 (1007)
167 KOG2135 Proteins containing th 55.3 8 0.00017 45.1 2.4 62 26-92 386-447 (526)
168 PF11767 SET_assoc: Histone ly 54.3 44 0.00095 29.5 6.2 55 24-85 11-65 (66)
169 KOG2591 c-Mpl binding protein, 53.3 20 0.00043 42.8 5.1 66 13-83 175-244 (684)
170 KOG4661 Hsp27-ERE-TATA-binding 44.2 9.5 0.00021 45.4 0.8 50 137-195 420-473 (940)
171 KOG2318 Uncharacterized conser 33.1 1.2E+02 0.0027 36.7 7.3 71 12-84 173-299 (650)
172 KOG4676 Splicing factor, argin 32.5 9.8 0.00021 43.6 -1.4 75 14-91 152-226 (479)
173 KOG0151 Predicted splicing reg 31.6 32 0.00069 42.2 2.5 69 117-197 171-247 (877)
174 KOG4410 5-formyltetrahydrofola 27.6 1.1E+02 0.0023 34.5 5.3 47 13-60 330-376 (396)
175 KOG2891 Surface glycoprotein [ 27.3 48 0.001 36.9 2.7 95 13-109 149-286 (445)
176 KOG0804 Cytoplasmic Zn-finger 26.7 1.3E+02 0.0028 35.5 6.0 66 13-80 74-142 (493)
177 KOG0415 Predicted peptidyl pro 26.7 79 0.0017 36.3 4.3 62 125-196 243-308 (479)
178 COG5175 MOT2 Transcriptional r 24.4 75 0.0016 36.3 3.6 47 139-194 137-190 (480)
179 KOG2193 IGF-II mRNA-binding pr 23.7 4.6 0.0001 46.5 -5.8 74 13-88 80-154 (584)
180 smart00427 H2B Histone H2B. 21.6 70 0.0015 30.0 2.3 21 214-234 19-39 (89)
No 1
>PLN03213 repressor of silencing 3; Provisional
Probab=100.00 E-value=4e-101 Score=830.29 Aligned_cols=346 Identities=47% Similarity=0.729 Sum_probs=305.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccch
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEH 91 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKpr 91 (800)
...+||||||++.+++++|+.+|..||.|.+|.|+|.+|||||||+|...+..++.+||..|||+.|+||.|+|..|+|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 45899999999999999999999999999999999999999999999973347899999999999999999999999999
Q ss_pred hhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceeeeccCCCCCcccccccccCC-
Q 003717 92 YLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPFCGTGKHKYSFQRVEAP- 170 (800)
Q Consensus 92 ~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKsVp~pgTGK~KYGF~~ve~P- 170 (800)
|+.|++++|+++... .+ . . ..+.+...+..+|++||+++|+|+.+||.+||||||.|+++++|
T Consensus 89 YLeRLkrEReea~s~------~~----~-~-----~kl~k~~~e~~qLnifFPrLrKvKslPfsGTGKHkYSFr~ieVp~ 152 (759)
T PLN03213 89 YLARLKREWEAASST------SD----N-T-----IKAPSDSPPATHLNIFFPRLRKVKAMPLSGTGKHKYSFQRVPLSS 152 (759)
T ss_pred HHHHHHHHHHHhhcc------cc----c-c-----ccccccCCccceeeEeccccccccccccCCCccceeeeeeccCCC
Confidence 999999998876311 11 0 0 11233344448999999999999999999999999999999999
Q ss_pred CCCcccccccchhhhhhhhccCccccCCCCccccchhhhcCcccchHHHHHHhHHHHHHhhhhcccCCCCCCCCcccccc
Q 003717 171 PLPKYFCDCEEHSAAFHAAEGKQIHHPAAGQEEIHDMEELGASVINEEELNLMNSVMNKLFERENVSNAGLSGTELTNYE 250 (800)
Q Consensus 171 s~pV~F~sfEea~aA~eAmNG~~i~n~n~~q~~i~~~ee~~gsg~~~~e~n~MnsVmnklfeke~vs~~~~~~~~~d~~~ 250 (800)
|+|+||||||+||.++.+....|+| .|++|+| |+|++|+|+|||||||||+|||+++
T Consensus 153 slP~HFCDCEEH~gp~~~pk~~~~~----------~~e~~~~-g~~~eE~niMNSVMNKLFEken~~n------------ 209 (759)
T PLN03213 153 SLPKSFCDCEEHSNNSLTPREIHLH----------DLEALNV-GRNEAEVNVMNSVMNKLFEKNNIDI------------ 209 (759)
T ss_pred CCCccccchhhccCCCCChhhcccc----------chhhhcc-cccHHHHHHHHHHHHHHHhhhcccc------------
Confidence 9999999999999987666555554 5699999 9999999999999999999999877
Q ss_pred cCcccccccccCCCCCCcccccccCcEEEEeecCCccccccccccccccccccccccccccccccccccccchhhhhccc
Q 003717 251 RNSYNFIGDLQIGGNEVDSVADEYNLVINAVSGGNNRMVLSRCQEKTTILPTNKKLTLSEARTSKDRSAQSLPREQKKND 330 (800)
Q Consensus 251 ~~s~~~~d~~~~~e~e~~~~~~~~~lvin~~~~~~~~~s~~~~~e~~~i~~~~~~s~~n~~~~s~~~~~~~~~~~~k~~~ 330 (800)
+++|| +.++|+|||||||+++ +++|+ +++++| +++|++|||+||+++|+|+| .||+|+
T Consensus 210 ----------~~~en--e~e~D~DnLIiNv~s~-~~~~a----~ele~i-s~~~ks~~N~~~~sed~p~e----~~k~~~ 267 (759)
T PLN03213 210 ----------AEEDN--EIEADQDNLIINVASS-GNDMD----SALDKL-SRKRKSILNEKTPSEEGYSE----GRKGNH 267 (759)
T ss_pred ----------ccccc--cccccccceEEeeccc-cchhH----HHHHHh-hhhhHhhhccccccccCCcc----cccccc
Confidence 46777 4568999999999999 89998 788888 79999999999999999994 569999
Q ss_pred cchhhhccccccchh----hhhcCCC-CCCcccccCCCCCCCccCcccccccccccccCCcccccccchhhhccCCCCCc
Q 003717 331 LLRSKKRKSLHNDEI----LMAASPL-DDMNVQTNMNKPSTPLATQHAETDSGVRKSTASHSWSQKMSWKALVGDKDSRA 405 (800)
Q Consensus 331 ~~~~kkrk~~~~~e~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sw~qk~sw~~l~~~~~~~~ 405 (800)
++++||||+||++|+ +.+++|+ +|+++||+.+..+.|++ .. ++.+++++||||||||||+|||++||++
T Consensus 268 ~~s~KKRksls~~ES~~n~~~s~~~~~~K~s~q~p~~~~g~~s~--t~----el~g~~~~vSWSQKSSWreLvg~~~nn~ 341 (759)
T PLN03213 268 IHPSKKRQTISLEESGRQESSQAIREKKKPSEVVPDKSLDEPSR--TK----DLEQSIDNISWSQKSSWKSLMANGNSND 341 (759)
T ss_pred cccchhccccccCccCCcceeeecccCCCccccccccccccccC--Cc----cccccccCcchhhcchHHHHhccCCCCc
Confidence 999999999999999 8899999 99999999999666666 33 3336999999999999999999999999
Q ss_pred ceecccCCCCCChhhhccC
Q 003717 406 FSVSNILPSDASTEEADNG 424 (800)
Q Consensus 406 ~~~s~~~p~~~s~~~~~~~ 424 (800)
||||+||||++|++++.-.
T Consensus 342 fsiS~~lPg~~S~k~~Q~~ 360 (759)
T PLN03213 342 FSVSSFLPGVGSSKAVQPA 360 (759)
T ss_pred cchhhhcCCCCcccccCCC
Confidence 9999999999999986543
No 2
>PLN03213 repressor of silencing 3; Provisional
Probab=100.00 E-value=5.8e-35 Score=317.64 Aligned_cols=135 Identities=21% Similarity=0.290 Sum_probs=123.8
Q ss_pred cCccceeeeccccCccccccccccccccccccccccccCCCCcccCCCccccccccc----cccccccccccccccCCce
Q 003717 437 ESDDLMINVVSKKKPKMALSSSQKWETTSTTYRKSVSNEDNNTTKDRPIQQEKSTLP----SKKKRKSVIDDESDKNKSV 512 (800)
Q Consensus 437 ~~d~l~~n~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~----~~kkrks~~~~e~~~n~~~ 512 (800)
.-|||||||+|+|| +|| ++||+|++||++|| |++|+++|+|+|. ++| ++||||+|+++||++|+++
T Consensus 219 D~DnLIiNv~s~~~-~~a----~ele~is~~~ks~~--N~~~~sed~p~e~---~k~~~~~s~KKRksls~~ES~~n~~~ 288 (759)
T PLN03213 219 DQDNLIINVASSGN-DMD----SALDKLSRKRKSIL--NEKTPSEEGYSEG---RKGNHIHPSKKRQTISLEESGRQESS 288 (759)
T ss_pred cccceEEeeccccc-hhH----HHHHHhhhhhHhhh--ccccccccCCccc---ccccccccchhccccccCccCCccee
Confidence 34999999999999 999 99999999999999 9999999999998 666 8999999999999999999
Q ss_pred eeccC-CCCcccccc-CCCCCCCCCccCcchhhhcccccCCcCcCCccceeecCCCCCcccccccCCCCchhhhhhc
Q 003717 513 HTVPE-TDGCAQTYT-ESQMPTGPQLVEPESVVEQSISDHSESKKPSQRVVIGSKGNDESSVSNVLPDNSAKEEQRV 587 (800)
Q Consensus 513 ~~~~~-~~~~~q~~~-~~~~~~~~q~~e~~~~~~~~~~~~s~s~k~s~r~~~g~~~n~~~~~s~~~p~~~~~~~~~~ 587 (800)
+++|+ +|++|||+. +.++|++ +.|++ +++++||||||||||||||++|||+||||+||||+++.++||.
T Consensus 289 s~~~~~~K~s~q~p~~~~g~~s~--t~el~----g~~~~vSWSQKSSWreLvg~~~nn~fsiS~~lPg~~S~k~~Q~ 359 (759)
T PLN03213 289 QAIREKKKPSEVVPDKSLDEPSR--TKDLE----QSIDNISWSQKSSWKSLMANGNSNDFSVSSFLPGVGSSKAVQP 359 (759)
T ss_pred eecccCCCccccccccccccccC--Ccccc----ccccCcchhhcchHHHHhccCCCCccchhhhcCCCCcccccCC
Confidence 99999 999999999 5555555 33433 6999999999999999999999999999999999999999875
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.80 E-value=3e-19 Score=191.87 Aligned_cols=164 Identities=20% Similarity=0.275 Sum_probs=132.9
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc--C--CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEE
Q 003717 11 EEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--K--GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLE 86 (800)
Q Consensus 11 ~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd--T--GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe 86 (800)
...++|||+|||+++|+++|+++|+.||.|++|+|+++ + .+|||||+|.+ .++|.+|+..|||..|.+++|+|.
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~--~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGS--EADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEcc--HHHHHHHHHHcCCCccCCceeeee
Confidence 35689999999999999999999999999999999854 3 37999999997 999999999999999999999999
Q ss_pred eccchhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCcccee---eeccCCCCCcc-c
Q 003717 87 RAKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVK---TLPFCGTGKHK-Y 162 (800)
Q Consensus 87 ~AKpr~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVK---sVp~pgTGK~K-Y 162 (800)
+|++... .....++++.+ |+..+++ ++|+.+|.+||.|. +++++.+|+++ |
T Consensus 183 ~a~p~~~-----------------------~~~~~~lfV~n-Lp~~vte-e~L~~~F~~fG~V~~v~i~~d~~tg~~kG~ 237 (346)
T TIGR01659 183 YARPGGE-----------------------SIKDTNLYVTN-LPRTITD-DQLDTIFGKYGQIVQKNILRDKLTGTPRGV 237 (346)
T ss_pred ccccccc-----------------------ccccceeEEeC-CCCcccH-HHHHHHHHhcCCEEEEEEeecCCCCccceE
Confidence 9875310 00122355544 6777766 89999999999864 45667799987 7
Q ss_pred ccccccCCCCCcccccccchhhhhhhhccCccccCCCCccccchhhhcC
Q 003717 163 SFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHPAAGQEEIHDMEELG 211 (800)
Q Consensus 163 GF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n~~q~~i~~~ee~~ 211 (800)
+| |.|.+.+++..|+++||+..+.. .+..+.|+.++++.
T Consensus 238 aF---------V~F~~~e~A~~Ai~~lng~~~~g-~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 238 AF---------VRFNKREEAQEAISALNNVIPEG-GSQPLTVRLAEEHG 276 (346)
T ss_pred EE---------EEECCHHHHHHHHHHhCCCccCC-CceeEEEEECCccc
Confidence 77 99999999999999999887643 23456666666654
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.76 E-value=3.5e-18 Score=178.04 Aligned_cols=147 Identities=20% Similarity=0.329 Sum_probs=121.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc--C--CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--K--GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd--T--GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
..+|||||||+.+++++|+++|+.||+|.+|+|+++ + .+|||||+|.+ .++|.+|+..|||..|.|++|+|.++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~--~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVR--PEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECc--HHHHHHHHhhcccEEECCeeEEEEee
Confidence 479999999999999999999999999999999954 3 37999999997 99999999999999999999999998
Q ss_pred cchhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceee---eccCCCCCcc-ccc
Q 003717 89 KEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKT---LPFCGTGKHK-YSF 164 (800)
Q Consensus 89 Kpr~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKs---Vp~pgTGK~K-YGF 164 (800)
++.... .....+++.+ |+..+++ ++|+.+|..||.|.. +.+..+|.++ |||
T Consensus 81 ~~~~~~-----------------------~~~~~l~v~~-l~~~~~~-~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~f 135 (352)
T TIGR01661 81 RPSSDS-----------------------IKGANLYVSG-LPKTMTQ-HELESIFSPFGQIITSRILSDNVTGLSKGVGF 135 (352)
T ss_pred cccccc-----------------------cccceEEECC-ccccCCH-HHHHHHHhccCCEEEEEEEecCCCCCcCcEEE
Confidence 764210 0012345543 5677766 899999999999754 4445677776 777
Q ss_pred ccccCCCCCcccccccchhhhhhhhccCccc
Q 003717 165 QRVEAPPLPKYFCDCEEHSAAFHAAEGKQIH 195 (800)
Q Consensus 165 ~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~ 195 (800)
|.|.+.+++..|+..|||..+.
T Consensus 136 ---------v~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 136 ---------IRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred ---------EEECCHHHHHHHHHHhCCCccC
Confidence 8999999999999999998664
No 5
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.75 E-value=1.8e-18 Score=171.88 Aligned_cols=154 Identities=22% Similarity=0.338 Sum_probs=129.2
Q ss_pred hccCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc----CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEE
Q 003717 9 EVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT----KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLR 84 (800)
Q Consensus 9 Ev~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd----TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~Lr 84 (800)
+.++..+||||||+..++++.|+++|-+.|+|+++.++++ .++|||||+|.+ +++|+.|+..||+..|.||+|+
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~--eedadYAikiln~VkLYgrpIr 82 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRT--EEDADYAIKILNMVKLYGRPIR 82 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEec--hhhhHHHHHHHHHHHhcCceeE
Confidence 4567799999999999999999999999999999999854 358999999998 9999999999999999999999
Q ss_pred EEeccchhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccce----eeeccCCCCCc
Q 003717 85 LERAKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKV----KTLPFCGTGKH 160 (800)
Q Consensus 85 Ve~AKpr~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKV----KsVp~pgTGK~ 160 (800)
|..|..+.. ..+. ..++++++ |.+.+++ ..|...|+.||.+ +++|++.||.+
T Consensus 83 v~kas~~~~---------------------nl~v-ganlfvgN-Ld~~vDe-~~L~dtFsafG~l~~~P~i~rd~~tg~~ 138 (203)
T KOG0131|consen 83 VNKASAHQK---------------------NLDV-GANLFVGN-LDPEVDE-KLLYDTFSAFGVLISPPKIMRDPDTGNP 138 (203)
T ss_pred EEecccccc---------------------cccc-cccccccc-cCcchhH-HHHHHHHHhccccccCCcccccccCCCC
Confidence 998762210 0111 12455544 5667766 7888888888884 67899999999
Q ss_pred c-cccccccCCCCCcccccccchhhhhhhhccCccccC
Q 003717 161 K-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHP 197 (800)
Q Consensus 161 K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~ 197 (800)
+ ||| +.|.+||.+++|+++|||+++|++
T Consensus 139 ~~~g~---------i~~~sfeasd~ai~s~ngq~l~nr 167 (203)
T KOG0131|consen 139 KGFGF---------INYASFEASDAAIGSMNGQYLCNR 167 (203)
T ss_pred CCCeE---------EechhHHHHHHHHHHhccchhcCC
Confidence 8 665 899999999999999999999997
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.73 E-value=8.5e-18 Score=191.67 Aligned_cols=170 Identities=15% Similarity=0.230 Sum_probs=128.3
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc--C--CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEE
Q 003717 11 EEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--K--GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLE 86 (800)
Q Consensus 11 ~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd--T--GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe 86 (800)
....+||||||++.+++++|+++|.+||.|.+|+|+++ + .+|||||+|.+ .++|..|+..|||..|+||.|+|.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s--~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEV--PEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCc--HHHHHHHHHhcCCeEEecceeeec
Confidence 34679999999999999999999999999999999854 3 47999999997 999999999999999999999998
Q ss_pred eccchhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceeee---ccCCCCCcc-c
Q 003717 87 RAKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTL---PFCGTGKHK-Y 162 (800)
Q Consensus 87 ~AKpr~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKsV---p~pgTGK~K-Y 162 (800)
+.......+ . .... . .. .......+++++ |...+++ ++|+.+|..||.|..+ +++.+|+++ |
T Consensus 183 rp~~~p~a~---~---~~~~-~---~~--~~~~~~rLfVgn-Lp~~vte-edLk~lFs~FG~I~svrl~~D~~tgksKGf 248 (612)
T TIGR01645 183 RPSNMPQAQ---P---IIDM-V---QE--EAKKFNRIYVAS-VHPDLSE-TDIKSVFEAFGEIVKCQLARAPTGRGHKGY 248 (612)
T ss_pred ccccccccc---c---cccc-c---cc--cccccceEEeec-CCCCCCH-HHHHHHHhhcCCeeEEEEEecCCCCCcCCe
Confidence 643221000 0 0000 0 00 011123455544 6777766 8999999999997654 556788887 7
Q ss_pred ccccccCCCCCcccccccchhhhhhhhccCccccCCCCccccchhh
Q 003717 163 SFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHPAAGQEEIHDME 208 (800)
Q Consensus 163 GF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n~~q~~i~~~e 208 (800)
|| |.|.+.+++..|+++|||..+ +|...+|.++-
T Consensus 249 GF---------VeFe~~e~A~kAI~amNg~el---gGr~LrV~kAi 282 (612)
T TIGR01645 249 GF---------IEYNNLQSQSEAIASMNLFDL---GGQYLRVGKCV 282 (612)
T ss_pred EE---------EEECCHHHHHHHHHHhCCCee---CCeEEEEEecC
Confidence 77 899999999999999998865 35556665433
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.68 E-value=1.3e-16 Score=178.05 Aligned_cols=147 Identities=24% Similarity=0.349 Sum_probs=119.3
Q ss_pred EEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccC----CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccc
Q 003717 15 RIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK----GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKE 90 (800)
Q Consensus 15 TLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdT----GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKp 90 (800)
.|||||||+++|+++|+++|++||.|.+|+|+++. .+|||||+|.+ .++|.+|+..||+..|.|+.|+|.++..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~--~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQN--PADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECC--HHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 79999999999999999999999999999999652 36999999997 9999999999999999999999998753
Q ss_pred hhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceeeecc--CCCCCcc-cccccc
Q 003717 91 HYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPF--CGTGKHK-YSFQRV 167 (800)
Q Consensus 91 r~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKsVp~--pgTGK~K-YGF~~v 167 (800)
....+ .....++++.+ |..+++. +.|+.+|+.||.|..+.. ..+|+++ |||
T Consensus 80 ~~~~~---------------------~~~~~~vfV~n-Lp~~~~~-~~L~~~F~~~G~i~~~~i~~~~~g~skg~af--- 133 (562)
T TIGR01628 80 DPSLR---------------------RSGVGNIFVKN-LDKSVDN-KALFDTFSKFGNILSCKVATDENGKSRGYGF--- 133 (562)
T ss_pred ccccc---------------------ccCCCceEEcC-CCccCCH-HHHHHHHHhcCCcceeEeeecCCCCcccEEE---
Confidence 21000 00122355544 5777766 899999999999765544 2467776 777
Q ss_pred cCCCCCcccccccchhhhhhhhccCccc
Q 003717 168 EAPPLPKYFCDCEEHSAAFHAAEGKQIH 195 (800)
Q Consensus 168 e~Ps~pV~F~sfEea~aA~eAmNG~~i~ 195 (800)
|.|.+.+++..|++.+||..+.
T Consensus 134 ------V~F~~~e~A~~Ai~~lng~~~~ 155 (562)
T TIGR01628 134 ------VHFEKEESAKAAIQKVNGMLLN 155 (562)
T ss_pred ------EEECCHHHHHHHHHHhcccEec
Confidence 8999999999999999987664
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.68 E-value=2.8e-16 Score=170.13 Aligned_cols=168 Identities=19% Similarity=0.309 Sum_probs=126.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc--C--CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEe
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--K--GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLER 87 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd--T--GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~ 87 (800)
..++|||+|||+.+++++|+++|++||.|..|.++++ + .+|||||+|.+ .++|.+||. |+|..|.|++|.|..
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~--~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYD--VESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECC--HHHHHHHHH-hCCCEECCeeeEEee
Confidence 4579999999999999999999999999999999954 2 37999999997 999999996 999999999999987
Q ss_pred ccchhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceee---eccCCCCCcc-cc
Q 003717 88 AKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKT---LPFCGTGKHK-YS 163 (800)
Q Consensus 88 AKpr~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKs---Vp~pgTGK~K-YG 163 (800)
+....... ..... . .....+....+++++ |...+++ ++|+.+|..||.|.. ++++.+|+++ ||
T Consensus 165 ~~~~~~~~------~~~~~--~---~~~~~p~~~~l~v~n-l~~~~te-~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~a 231 (457)
T TIGR01622 165 SQAEKNRA------AKAAT--H---QPGDIPNFLKLYVGN-LHFNITE-QELRQIFEPFGDIEDVQLHRDPETGRSKGFG 231 (457)
T ss_pred cchhhhhh------hhccc--c---cCCCCCCCCEEEEcC-CCCCCCH-HHHHHHHHhcCCeEEEEEEEcCCCCccceEE
Confidence 65432110 00000 0 000111133455544 5677766 899999999999754 4556788887 77
Q ss_pred cccccCCCCCcccccccchhhhhhhhccCccccCCCCccccchh
Q 003717 164 FQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHPAAGQEEIHDM 207 (800)
Q Consensus 164 F~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n~~q~~i~~~ 207 (800)
| |.|.+.+++..|+..|||..+ .|..+.|..+
T Consensus 232 f---------V~f~~~e~A~~A~~~l~g~~i---~g~~i~v~~a 263 (457)
T TIGR01622 232 F---------IQFHDAEEAKEALEVMNGFEL---AGRPIKVGYA 263 (457)
T ss_pred E---------EEECCHHHHHHHHHhcCCcEE---CCEEEEEEEc
Confidence 7 899999999999999999655 3555555543
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.68 E-value=2.5e-16 Score=164.26 Aligned_cols=172 Identities=20% Similarity=0.317 Sum_probs=121.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc----CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCC--eEEEE
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT----KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKG--GRLRL 85 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd----TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdG--R~LrV 85 (800)
...+|||+|||..+++++|+.+|++||.|..+.++.+ ..+|||||+|.+ .++|..|+..|||..+.| ++|.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~--~~~A~~ai~~l~g~~~~g~~~~i~v 165 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDK--RDEADRAIKTLNGTTPSGCTEPITV 165 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECC--HHHHHHHHHHhCCCccCCCceeEEE
Confidence 3568999999999999999999999999999998843 247999999997 999999999999999987 67889
Q ss_pred EeccchhhHHHhhhHH--H--Hhh----------------------------------------------------hhCC
Q 003717 86 ERAKEHYLARLKREWA--E--DDA----------------------------------------------------QLVN 109 (800)
Q Consensus 86 e~AKpr~~~RlkrEra--q--~ra----------------------------------------------------k~~~ 109 (800)
.+|............. . ... ....
T Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (352)
T TIGR01661 166 KFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRAS 245 (352)
T ss_pred EECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCC
Confidence 8885432100000000 0 000 0000
Q ss_pred CCCCCC----C--CCCC-------CCcccCCCCCCCCCcchhhcccccCccceee---eccCCCCCcc-cccccccCCCC
Q 003717 110 PPVTDS----V--APDN-------KDATRLDTPKKLLDKDKKLNIFFPRLRKVKT---LPFCGTGKHK-YSFQRVEAPPL 172 (800)
Q Consensus 110 sp~sD~----V--d~~~-------~kl~is~~Lkksvdesd~LreyFskyGKVKs---Vp~pgTGK~K-YGF~~ve~Ps~ 172 (800)
.+..+. . .... ..+++.+ |+..+++ ++|+.+|+.||.|.. ++++.||++| |||
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~N-L~~~~~e-~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aF-------- 315 (352)
T TIGR01661 246 PPATDGQTAGLAAGAQIAASDGAGYCIFVYN-LSPDTDE-TVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGF-------- 315 (352)
T ss_pred CccccccccccccCCCCCCCCCCCcEEEEeC-CCCCCCH-HHHHHHHHhCCCeEEEEEeEcCCCCCccceEE--------
Confidence 000000 0 0000 0144443 5666655 899999999999754 5566799997 777
Q ss_pred CcccccccchhhhhhhhccCcccc
Q 003717 173 PKYFCDCEEHSAAFHAAEGKQIHH 196 (800)
Q Consensus 173 pV~F~sfEea~aA~eAmNG~~i~n 196 (800)
|.|.+.+++..|+.+|||..+..
T Consensus 316 -V~F~~~~~A~~Ai~~lnG~~~~g 338 (352)
T TIGR01661 316 -VSMTNYDEAAMAILSLNGYTLGN 338 (352)
T ss_pred -EEECCHHHHHHHHHHhCCCEECC
Confidence 99999999999999999988743
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.65 E-value=6.5e-16 Score=171.15 Aligned_cols=173 Identities=18% Similarity=0.265 Sum_probs=123.3
Q ss_pred CCcEEEEeCCCC-CCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccc
Q 003717 12 EQTRIYVGGLGE-KVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKE 90 (800)
Q Consensus 12 qsrTLFVGNLP~-nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKp 90 (800)
...+|||+||++ .+++++|+++|+.||.|..|+++++ .+|||||+|.+ .++|..|+..|||+.|.|++|+|.+++.
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~--~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMAD--PYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECC--HHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 457999999998 6999999999999999999999875 47999999997 9999999999999999999999999865
Q ss_pred hhhHHHhhhH-H------HHh--hh--hCCCCCC---CCCCCCCCCcccCCCCCCCCCcchhhcccccCccc--eeeecc
Q 003717 91 HYLARLKREW-A------EDD--AQ--LVNPPVT---DSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRK--VKTLPF 154 (800)
Q Consensus 91 r~~~RlkrEr-a------q~r--ak--~~~sp~s---D~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGK--VKsVp~ 154 (800)
......+... . .+. .. ....+.. ....+....+++.+ |+..+++ ++|+.+|..||. |..+..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~N-Lp~~~te-e~L~~lF~~~G~~~i~~ik~ 428 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSN-IPLSVSE-EDLKELFAENGVHKVKKFKF 428 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEec-CCCCCCH-HHHHHHHHhcCCccceEEEE
Confidence 4221100000 0 000 00 0000000 00111223444444 5666765 899999999998 544433
Q ss_pred -C-CCCCcccccccccCCCCCcccccccchhhhhhhhccCccccCC
Q 003717 155 -C-GTGKHKYSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHPA 198 (800)
Q Consensus 155 -p-gTGK~KYGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n 198 (800)
+ .+++.+||| |.|.+.+++..|+.+|||..+....
T Consensus 429 ~~~~~~~~~~gf---------VeF~~~e~A~~Al~~ln~~~l~~~~ 465 (481)
T TIGR01649 429 FPKDNERSKMGL---------LEWESVEDAVEALIALNHHQLNEPN 465 (481)
T ss_pred ecCCCCcceeEE---------EEcCCHHHHHHHHHHhcCCccCCCC
Confidence 2 234556888 8999999999999999998886553
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.64 E-value=1.1e-15 Score=170.94 Aligned_cols=176 Identities=19% Similarity=0.326 Sum_probs=130.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc---CCCcEEEEEecCCCHHHHHHHHHhcCCcEeC----CeEEE
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT---KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWK----GGRLR 84 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd---TGRGFGFVEFeS~D~EdAekAIe~LNG~eLd----GR~Lr 84 (800)
..++|||+||++.+|+++|+++|+.||.|.++.++++ ..+|||||+|.+ .++|.+|+..|||..|. |+.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~--~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEK--HEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECC--HHHHHHHHHHhCCcEecccccceeeE
Confidence 3468999999999999999999999999999999854 237999999997 99999999999999999 99999
Q ss_pred EEeccchhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceeeecc--CCCCCcc-
Q 003717 85 LERAKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPF--CGTGKHK- 161 (800)
Q Consensus 85 Ve~AKpr~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKsVp~--pgTGK~K- 161 (800)
|.++..+........+......... .......++++.+ |...+++ +.|+.+|..||.|..+.. ..+|+++
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~-----~~~~~~~~l~V~n-l~~~~~~-~~L~~~F~~~G~i~~~~i~~d~~g~~~g 327 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQER-----KMKAQGVNLYVKN-LDDTVTD-EKLRELFSECGEITSAKVMLDEKGVSRG 327 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhh-----hcccCCCEEEEeC-CCCccCH-HHHHHHHHhcCCeEEEEEEECCCCCcCC
Confidence 9998776433211111111000000 0112233455544 5666766 899999999999765433 2678877
Q ss_pred cccccccCCCCCcccccccchhhhhhhhccCccccCCCCccccchhh
Q 003717 162 YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHPAAGQEEIHDME 208 (800)
Q Consensus 162 YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n~~q~~i~~~e 208 (800)
||| |.|.+.+++..|+..|||..+ +|+...|.-+.
T Consensus 328 ~gf---------V~f~~~~~A~~A~~~~~g~~~---~gk~l~V~~a~ 362 (562)
T TIGR01628 328 FGF---------VCFSNPEEANRAVTEMHGRML---GGKPLYVALAQ 362 (562)
T ss_pred eEE---------EEeCCHHHHHHHHHHhcCCee---CCceeEEEecc
Confidence 777 899999999999999999555 46666666443
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.63 E-value=1.3e-15 Score=168.82 Aligned_cols=157 Identities=15% Similarity=0.107 Sum_probs=117.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHh--cCCcEeCCeEEEEEeccc
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFST--YNGCVWKGGRLRLERAKE 90 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~--LNG~eLdGR~LrVe~AKp 90 (800)
.+.|||||||+.+++++|+++|++||.|.+|.+++ .+|||||+|.+ .++|.+|+.. +++..|.|++|+|.++..
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~--~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFED--EESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCc--hHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 47899999999999999999999999999999986 57899999997 9999999987 478999999999999976
Q ss_pred hhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceeeecc-CCCCCcccccccccC
Q 003717 91 HYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPF-CGTGKHKYSFQRVEA 169 (800)
Q Consensus 91 r~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKsVp~-pgTGK~KYGF~~ve~ 169 (800)
+...+.. . . .. ..... .....+++.+ |...+++ +.|+.+|+.||.|..+.. +..+. .|||
T Consensus 78 ~~~~~~~-----~--~-~~--~~~~~-~~~~~v~v~n-l~~~vt~-~~L~~~F~~~G~V~~v~i~~~~~~-~~af----- 138 (481)
T TIGR01649 78 QEIKRDG-----N--S-DF--DSAGP-NKVLRVIVEN-PMYPITL-DVLYQIFNPYGKVLRIVTFTKNNV-FQAL----- 138 (481)
T ss_pred cccccCC-----C--C-cc--cCCCC-CceEEEEEcC-CCCCCCH-HHHHHHHhccCCEEEEEEEecCCc-eEEE-----
Confidence 5322110 0 0 00 00000 0111233333 4556655 899999999999765432 22221 2577
Q ss_pred CCCCcccccccchhhhhhhhccCcccc
Q 003717 170 PPLPKYFCDCEEHSAAFHAAEGKQIHH 196 (800)
Q Consensus 170 Ps~pV~F~sfEea~aA~eAmNG~~i~n 196 (800)
|.|.+.++|..|+++|||..+..
T Consensus 139 ----Vef~~~~~A~~A~~~Lng~~i~~ 161 (481)
T TIGR01649 139 ----VEFESVNSAQHAKAALNGADIYN 161 (481)
T ss_pred ----EEECCHHHHHHHHHHhcCCcccC
Confidence 99999999999999999999864
No 13
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=2e-15 Score=167.91 Aligned_cols=170 Identities=18% Similarity=0.248 Sum_probs=127.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccC----CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK----GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdT----GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
..||||++||+.++.++|.++|+.+|+|..|.++.++ +||||||+|+- .++++.|+...++..|.||.|+|+.|
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam--~ED~qrA~~e~~~~kf~Gr~l~v~~A 82 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAM--EEDVQRALAETEQSKFEGRILNVDPA 82 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeeh--HhHHHHHHHHhhcCcccceecccccc
Confidence 3799999999999999999999999999999999654 38999999998 99999999999999999999999999
Q ss_pred cchhhHHHhhh-HHHHhhhhCCCCCC--CCCCCCCCCcccCCCCCCCCCcchhhcccccCccceeeecc--CCCC-Cccc
Q 003717 89 KEHYLARLKRE-WAEDDAQLVNPPVT--DSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPF--CGTG-KHKY 162 (800)
Q Consensus 89 Kpr~~~RlkrE-raq~rak~~~sp~s--D~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKsVp~--pgTG-K~KY 162 (800)
+++........ ...+.......+.. +.++...+.+.| +.|++.... .+|..+|+.||+|.-|.+ +..| .+.|
T Consensus 83 ~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLII-RNLPf~~k~-~dLk~vFs~~G~V~Ei~IP~k~dgklcGF 160 (678)
T KOG0127|consen 83 KKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLII-RNLPFKCKK-PDLKNVFSNFGKVVEIVIPRKKDGKLCGF 160 (678)
T ss_pred cccccchhcccccchhhhcccccCCcchhhccCccceEEe-ecCCcccCc-HHHHHHHhhcceEEEEEcccCCCCCccce
Confidence 87743321110 01111111222222 222322444544 557888877 699999999999765433 3444 4557
Q ss_pred ccccccCCCCCcccccccchhhhhhhhccCccc
Q 003717 163 SFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIH 195 (800)
Q Consensus 163 GF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~ 195 (800)
|| |.|...-++..|++-+||..|-
T Consensus 161 aF---------V~fk~~~dA~~Al~~~N~~~i~ 184 (678)
T KOG0127|consen 161 AF---------VQFKEKKDAEKALEFFNGNKID 184 (678)
T ss_pred EE---------EEEeeHHHHHHHHHhccCceec
Confidence 77 8999999999999999988773
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.58 E-value=4.2e-15 Score=162.88 Aligned_cols=173 Identities=14% Similarity=0.214 Sum_probs=112.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc--C--CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEe
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--K--GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLER 87 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd--T--GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~ 87 (800)
...+|||||||+.+++++|+++|..||.|..+.++++ + .+|||||+|.+ .++|..|+..|||..|+|+.|.|.+
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~--~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKD--PSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECC--HHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4579999999999999999999999999999998854 3 47999999997 9999999999999999999999999
Q ss_pred ccchhhHHHhhhHHHHhhhhCCCCCC--CCC----CCCCCCcccCCCC-CCCC-Cc-----c-hhhcccccCccceeeec
Q 003717 88 AKEHYLARLKREWAEDDAQLVNPPVT--DSV----APDNKDATRLDTP-KKLL-DK-----D-KKLNIFFPRLRKVKTLP 153 (800)
Q Consensus 88 AKpr~~~RlkrEraq~rak~~~sp~s--D~V----d~~~~kl~is~~L-kksv-de-----s-d~LreyFskyGKVKsVp 153 (800)
|......... ............+.. ... ......+.+.+.. ...+ ++ . ++|+..|.+||.|..|.
T Consensus 372 a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~ 450 (509)
T TIGR01642 372 ACVGANQATI-DTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIV 450 (509)
T ss_pred CccCCCCCCc-cccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEE
Confidence 8643211000 000000000000000 000 0000001111100 0001 11 0 46889999999988665
Q ss_pred cCC------CCCcccccccccCCCCCcccccccchhhhhhhhccCccc
Q 003717 154 FCG------TGKHKYSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIH 195 (800)
Q Consensus 154 ~pg------TGK~KYGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~ 195 (800)
++- ++.. +||. +|.|.+.++|..|+.+|||..+.
T Consensus 451 i~~~~~~~~~~~~-~G~~-------fV~F~~~e~A~~A~~~lnGr~~~ 490 (509)
T TIGR01642 451 IPRPNGDRNSTPG-VGKV-------FLEYADVRSAEKAMEGMNGRKFN 490 (509)
T ss_pred eeccCcCCCcCCC-cceE-------EEEECCHHHHHHHHHHcCCCEEC
Confidence 431 2222 2332 49999999999999999998873
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.58 E-value=3.9e-15 Score=163.06 Aligned_cols=178 Identities=17% Similarity=0.310 Sum_probs=119.0
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHhhhcC------------CceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEe
Q 003717 11 EEQTRIYVGGLGEKVTDDDLAKVFSSL------------GEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVW 78 (800)
Q Consensus 11 ~qsrTLFVGNLP~nVTEEDLrelFSqF------------G~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eL 78 (800)
...++|||||||+.+|+++|+++|.+| +.|..+.+ ...+|||||+|.+ .++|..|| .|||..|
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~--~~~kg~afVeF~~--~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI--NKEKNFAFLEFRT--VEEATFAM-ALDSIIY 247 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE--CCCCCEEEEEeCC--HHHHhhhh-cCCCeEe
Confidence 346799999999999999999999975 23443333 2358999999998 99999999 5999999
Q ss_pred CCeEEEEEeccchhhHH-HhhhHHHH----hhhhCC-CCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceee-
Q 003717 79 KGGRLRLERAKEHYLAR-LKREWAED----DAQLVN-PPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKT- 151 (800)
Q Consensus 79 dGR~LrVe~AKpr~~~R-lkrEraq~----rak~~~-sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKs- 151 (800)
.|+.|+|.......... ........ ...... ......+......+++++ |+..+++ ++|+.+|..||.|..
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n-lp~~~~~-~~l~~~f~~~G~i~~~ 325 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGN-LPLYLGE-DQIKELLESFGDLKAF 325 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeC-CCCCCCH-HHHHHHHHhcCCeeEE
Confidence 99999997543211000 00000000 000000 000001111223455554 5777766 899999999999764
Q ss_pred --eccCCCCCcc-cccccccCCCCCcccccccchhhhhhhhccCccccCCCCccccchh
Q 003717 152 --LPFCGTGKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHPAAGQEEIHDM 207 (800)
Q Consensus 152 --Vp~pgTGK~K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n~~q~~i~~~ 207 (800)
+.++.+|+++ ||| |.|.+.+.+..|+.+|||..+. |..+.|..+
T Consensus 326 ~~~~~~~~g~~~g~af---------v~f~~~~~a~~A~~~l~g~~~~---~~~l~v~~a 372 (509)
T TIGR01642 326 NLIKDIATGLSKGYAF---------CEYKDPSVTDVAIAALNGKDTG---DNKLHVQRA 372 (509)
T ss_pred EEEecCCCCCcCeEEE---------EEECCHHHHHHHHHHcCCCEEC---CeEEEEEEC
Confidence 4556789886 777 8999999999999999998874 333444443
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.5e-14 Score=150.96 Aligned_cols=164 Identities=18% Similarity=0.316 Sum_probs=121.7
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc----CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEE
Q 003717 10 VEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT----KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRL 85 (800)
Q Consensus 10 v~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd----TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrV 85 (800)
.++.-.+|||-|...++.++|++.|.+||+|.+++|+|| +++|||||.|.. .++|+.||..|||..|++|.||-
T Consensus 59 ~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~--k~dAEnAI~~MnGqWlG~R~IRT 136 (321)
T KOG0148|consen 59 SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPN--KEDAENAIQQMNGQWLGRRTIRT 136 (321)
T ss_pred cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccc--hHHHHHHHHHhCCeeeccceeec
Confidence 334567999999999999999999999999999999977 347999999998 99999999999999999999999
Q ss_pred EeccchhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceeeeccCCCCCcccccc
Q 003717 86 ERAKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPFCGTGKHKYSFQ 165 (800)
Q Consensus 86 e~AKpr~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKsVp~pgTGK~KYGF~ 165 (800)
.||..+..++......-+ +...+. .+.+.....++ +...+.+ +.+|..|+.||.|..||.-- -..|+|
T Consensus 137 NWATRKp~e~n~~~ltfd--eV~NQs-----sp~NtsVY~G~-I~~~lte-~~mr~~Fs~fG~I~EVRvFk--~qGYaF- 204 (321)
T KOG0148|consen 137 NWATRKPSEMNGKPLTFD--EVYNQS-----SPDNTSVYVGN-IASGLTE-DLMRQTFSPFGPIQEVRVFK--DQGYAF- 204 (321)
T ss_pred cccccCccccCCCCccHH--HHhccC-----CCCCceEEeCC-cCccccH-HHHHHhcccCCcceEEEEec--ccceEE-
Confidence 999765422111110000 111111 22233333333 3333544 89999999999987665421 113888
Q ss_pred cccCCCCCcccccccchhhhhhhhccCccc
Q 003717 166 RVEAPPLPKYFCDCEEHSAAFHAAEGKQIH 195 (800)
Q Consensus 166 ~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~ 195 (800)
|.|..-|.|..|+..|||..++
T Consensus 205 --------VrF~tkEaAahAIv~mNntei~ 226 (321)
T KOG0148|consen 205 --------VRFETKEAAAHAIVQMNNTEIG 226 (321)
T ss_pred --------EEecchhhHHHHHHHhcCceeC
Confidence 8899999999999999998884
No 17
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.53 E-value=8.9e-15 Score=156.02 Aligned_cols=167 Identities=17% Similarity=0.247 Sum_probs=126.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc--C--CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEe
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--K--GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLER 87 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd--T--GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~ 87 (800)
...+||||+|+|.++++.|+.+|++||.|.+|.++++ + .|||+||+|++ .+....++ ...-+.|+|+.|.++.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~--~~~v~~vl-~~~~h~~dgr~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFAT--PEGVDAVL-NARTHKLDGRSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCC--Ccchheee-cccccccCCcccccee
Confidence 4589999999999999999999999999999999965 3 37999999996 55555544 3456899999999999
Q ss_pred ccchhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCcccee---eeccCCCCCccccc
Q 003717 88 AKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVK---TLPFCGTGKHKYSF 164 (800)
Q Consensus 88 AKpr~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVK---sVp~pgTGK~KYGF 164 (800)
|.++...... .......+++++ .++.++.+ .+++.||.+||+|. ++.+..+.+++ ||
T Consensus 82 av~r~~~~~~-----------------~~~~~tkkiFvG-G~~~~~~e-~~~r~yfe~~g~v~~~~~~~d~~~~~~r-gF 141 (311)
T KOG4205|consen 82 AVSREDQTKV-----------------GRHLRTKKIFVG-GLPPDTTE-EDFKDYFEQFGKVADVVIMYDKTTSRPR-GF 141 (311)
T ss_pred ccCccccccc-----------------ccccceeEEEec-CcCCCCch-HHHhhhhhccceeEeeEEeecccccccc-cc
Confidence 9887311100 001123456665 46777766 99999999999854 55666777776 44
Q ss_pred ccccCCCCCcccccccchhhhhhhhccCccccCCCCccccchhhhcCc
Q 003717 165 QRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHPAAGQEEIHDMEELGA 212 (800)
Q Consensus 165 ~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n~~q~~i~~~ee~~g 212 (800)
+|..|++++++-.++. ++.|++++++|||++|.+++.
T Consensus 142 ----------gfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 142 ----------GFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred ----------eeeEeccccccceecc-cceeeecCceeeEeeccchhh
Confidence 3455555555656565 899999999999999999984
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.52 E-value=5.6e-14 Score=152.35 Aligned_cols=75 Identities=23% Similarity=0.560 Sum_probs=69.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc--C--CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--K--GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd--T--GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
..+|||+|||+.+++++|+++|++||.|..|.++++ + .+|||||+|.+ .++|.+|+..|||..|.|++|.|.+|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~--~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHD--AEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECC--HHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 479999999999999999999999999999999844 2 37999999997 99999999999999999999999997
Q ss_pred c
Q 003717 89 K 89 (800)
Q Consensus 89 K 89 (800)
.
T Consensus 264 ~ 264 (457)
T TIGR01622 264 Q 264 (457)
T ss_pred c
Confidence 5
No 19
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.50 E-value=1.1e-13 Score=132.30 Aligned_cols=78 Identities=24% Similarity=0.534 Sum_probs=71.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc----CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEe
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT----KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLER 87 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd----TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~ 87 (800)
..++|||+|||+.+++++|+++|.+||.|.+|.++.+ ..+|||||+|.+ .++|+.|++.|||+.|+|++|+|++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~--~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFND--EGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECC--HHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4579999999999999999999999999999999844 247999999997 9999999999999999999999999
Q ss_pred ccch
Q 003717 88 AKEH 91 (800)
Q Consensus 88 AKpr 91 (800)
+.++
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 8754
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.47 E-value=1.8e-13 Score=156.10 Aligned_cols=180 Identities=17% Similarity=0.279 Sum_probs=123.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc---CCCcEEEEEecCCCHHHHHHHHHhcCCcEeC-CeEEEEEe
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT---KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWK-GGRLRLER 87 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd---TGRGFGFVEFeS~D~EdAekAIe~LNG~eLd-GR~LrVe~ 87 (800)
..++|||||||+++++++|+++|++||.|.+|+|+++ ..||||||+|.+ .++|.+||+.||+..|. |+.|.|..
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~--~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCG--KEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCC--HHHHHHHHHHcCCCeecCCccccccc
Confidence 4589999999999999999999999999999999865 348999999997 99999999999999985 77776654
Q ss_pred ccc----------hhhHH--Hhh----------------------------------hHHHHhh--hhCC----------
Q 003717 88 AKE----------HYLAR--LKR----------------------------------EWAEDDA--QLVN---------- 109 (800)
Q Consensus 88 AKp----------r~~~R--lkr----------------------------------Eraq~ra--k~~~---------- 109 (800)
+.. ..... +.. ......+ +...
T Consensus 135 S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I 214 (578)
T TIGR01648 135 SVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVI 214 (578)
T ss_pred cccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceE
Confidence 421 00000 000 0000000 0000
Q ss_pred -----CCCCC---CCCCCCCCcccCCCCCCCCCcchhhcccccCc--cceeeeccCCCCCcccccccccCCCCCcccccc
Q 003717 110 -----PPVTD---SVAPDNKDATRLDTPKKLLDKDKKLNIFFPRL--RKVKTLPFCGTGKHKYSFQRVEAPPLPKYFCDC 179 (800)
Q Consensus 110 -----sp~sD---~Vd~~~~kl~is~~Lkksvdesd~LreyFsky--GKVKsVp~pgTGK~KYGF~~ve~Ps~pV~F~sf 179 (800)
.+... ........+++.+ |...+++ +.|+.+|..| |.|..+... ..|+| |.|.+.
T Consensus 215 ~VdwA~p~~~~d~~~~~~~k~LfVgN-L~~~~te-e~L~~~F~~f~~G~I~rV~~~----rgfAF---------VeF~s~ 279 (578)
T TIGR01648 215 AVDWAEPEEEVDEDVMAKVKILYVRN-LMTTTTE-EIIEKSFSEFKPGKVERVKKI----RDYAF---------VHFEDR 279 (578)
T ss_pred EEEeecccccccccccccccEEEEeC-CCCCCCH-HHHHHHHHhcCCCceEEEEee----cCeEE---------EEeCCH
Confidence 00000 0001122344543 5677766 8999999999 998876432 13777 899999
Q ss_pred cchhhhhhhhccCccccCCCCccccchhhhcC
Q 003717 180 EEHSAAFHAAEGKQIHHPAAGQEEIHDMEELG 211 (800)
Q Consensus 180 Eea~aA~eAmNG~~i~n~n~~q~~i~~~ee~~ 211 (800)
+++..|+++|||..+ +|..++|..+.+.+
T Consensus 280 e~A~kAi~~lnG~~i---~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 280 EDAVKAMDELNGKEL---EGSEIEVTLAKPVD 308 (578)
T ss_pred HHHHHHHHHhCCCEE---CCEEEEEEEccCCC
Confidence 999999999999876 45677777555443
No 21
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=1.3e-13 Score=150.49 Aligned_cols=164 Identities=15% Similarity=0.272 Sum_probs=125.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCC----CcEEEEEecCCCHHHHHHHHHhcCCc-EeCC--eEEE
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKG----RSFGYVDFFPSSHKSLSKLFSTYNGC-VWKG--GRLR 84 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTG----RGFGFVEFeS~D~EdAekAIe~LNG~-eLdG--R~Lr 84 (800)
..-+||||.+|..++|.+|+.+|++||.|.+|.|++|+. +|||||.|.+ .++|.+|+.+|+.. .|-| .+|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~t--rk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYT--RKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEecc--HHHHHHHHHHhhcccccCCCCccee
Confidence 356899999999999999999999999999999997742 7999999998 99999999999874 5544 6888
Q ss_pred EEeccchhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceeeecc--CCCCCcc-
Q 003717 85 LERAKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPF--CGTGKHK- 161 (800)
Q Consensus 85 Ve~AKpr~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKsVp~--pgTGK~K- 161 (800)
|++|.... ++. +...++|++. |.+...+ .+++++|.+||.|+.+.. ...|.++
T Consensus 111 vk~Ad~E~------er~----------------~~e~KLFvg~-lsK~~te-~evr~iFs~fG~Ied~~ilrd~~~~sRG 166 (510)
T KOG0144|consen 111 VKYADGER------ERI----------------VEERKLFVGM-LSKQCTE-NEVREIFSRFGHIEDCYILRDPDGLSRG 166 (510)
T ss_pred ecccchhh------hcc----------------ccchhhhhhh-ccccccH-HHHHHHHHhhCccchhhheecccccccc
Confidence 88875321 100 1233566655 5666656 899999999999875432 2345555
Q ss_pred cccccccCCCCCcccccccchhhhhhhhccCccccCCCCccccchhhhc
Q 003717 162 YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHPAAGQEEIHDMEEL 210 (800)
Q Consensus 162 YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n~~q~~i~~~ee~ 210 (800)
++| |.|..-|-+.+|+++|||.+.+-.-..-.-|+-++.+
T Consensus 167 caF---------V~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtq 206 (510)
T KOG0144|consen 167 CAF---------VKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQ 206 (510)
T ss_pred eeE---------EEEehHHHHHHHHHhhccceeeccCCCceEEEecccC
Confidence 888 8999999999999999999987654444444544443
No 22
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=3.6e-13 Score=140.22 Aligned_cols=145 Identities=23% Similarity=0.383 Sum_probs=119.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccC--C--CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK--G--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdT--G--RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
.++|.|.-||.++|+++|+.+|+..|+|.+|+++|++ | -|||||.|.. +.+|++|+..|||..|..+.|+|.+|
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~--p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVR--PKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecC--hHHHHHHHhhhcceeeccceEEEEec
Confidence 4689999999999999999999999999999999874 4 3999999996 99999999999999999999999999
Q ss_pred cchhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCcccee---eeccCCCCCcc-ccc
Q 003717 89 KEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVK---TLPFCGTGKHK-YSF 164 (800)
Q Consensus 89 Kpr~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVK---sVp~pgTGK~K-YGF 164 (800)
+|.... . .-.++.+++ |++.+.. ..|..+|..||.|. ++-+..||-.+ .||
T Consensus 119 RPSs~~---------------------I--k~aNLYvSG-lPktMtq-kelE~iFs~fGrIItSRiL~dqvtg~srGVgF 173 (360)
T KOG0145|consen 119 RPSSDS---------------------I--KDANLYVSG-LPKTMTQ-KELEQIFSPFGRIITSRILVDQVTGLSRGVGF 173 (360)
T ss_pred cCChhh---------------------h--cccceEEec-CCccchH-HHHHHHHHHhhhhhhhhhhhhcccceecceeE
Confidence 986311 0 112456665 4566645 88999999999964 45566788876 677
Q ss_pred ccccCCCCCcccccccchhhhhhhhccCc
Q 003717 165 QRVEAPPLPKYFCDCEEHSAAFHAAEGKQ 193 (800)
Q Consensus 165 ~~ve~Ps~pV~F~sfEea~aA~eAmNG~~ 193 (800)
+.|--.+|+..|+..+||+.
T Consensus 174 ---------iRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 174 ---------IRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ---------EEecchhHHHHHHHhccCCC
Confidence 77888888999999988764
No 23
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.41 E-value=9.1e-13 Score=106.11 Aligned_cols=67 Identities=27% Similarity=0.644 Sum_probs=62.4
Q ss_pred EEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc-C--CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEE
Q 003717 16 IYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT-K--GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLR 84 (800)
Q Consensus 16 LFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd-T--GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~Lr 84 (800)
|||+|||+++++++|+++|++||.|..+.++++ . .+|||||+|.+ .++|.+|+..|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~--~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFES--EEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESS--HHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcC--HHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999863 2 36999999997 9999999999999999999986
No 24
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=4.7e-13 Score=146.70 Aligned_cols=160 Identities=17% Similarity=0.289 Sum_probs=123.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCc-eeEEEEec---c--CCCcEEEEEecCCCHHHHHHHHHhc-CC-cEeCCeEEE
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGE-VKAVDIVR---T--KGRSFGYVDFFPSSHKSLSKLFSTY-NG-CVWKGGRLR 84 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~-VksVrVIR---d--TGRGFGFVEFeS~D~EdAekAIe~L-NG-~eLdGR~Lr 84 (800)
..+|||||+|.+.+.++|.+.|.+.++ |++|.|.. + ++||||||+|.+ ...|..|-+.| +| ..+.|..+.
T Consensus 164 n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~--H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 164 NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYES--HRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeec--chhHHHHHhhccCCceeecCCcce
Confidence 579999999999999999999999987 77776662 2 468999999997 77777776664 44 577899999
Q ss_pred EEeccchhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceeeeccCCCCCcc-cc
Q 003717 85 LERAKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPFCGTGKHK-YS 163 (800)
Q Consensus 85 Ve~AKpr~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKsVp~pgTGK~K-YG 163 (800)
|+||.|.... ..+ +..+.+.+++.+ |..++++ +.|+..|.+||+|.-|.. .+ |+
T Consensus 242 VdWAep~~e~-----------------ded-~ms~VKvLYVRN-L~~~tTe-E~lk~~F~~~G~veRVkk-----~rDYa 296 (506)
T KOG0117|consen 242 VDWAEPEEEP-----------------DED-TMSKVKVLYVRN-LMESTTE-ETLKKLFNEFGKVERVKK-----PRDYA 296 (506)
T ss_pred eeccCcccCC-----------------Chh-hhhheeeeeeec-cchhhhH-HHHHHHHHhccceEEeec-----cccee
Confidence 9999886311 011 222334454533 5666655 999999999999876522 23 99
Q ss_pred cccccCCCCCcccccccchhhhhhhhccCccccCCCCccccchhhhcC
Q 003717 164 FQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHPAAGQEEIHDMEELG 211 (800)
Q Consensus 164 F~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n~~q~~i~~~ee~~ 211 (800)
| |||...+++-.|++.|||..| +|+-.||.-+-+++
T Consensus 297 F---------VHf~eR~davkAm~~~ngkel---dG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 297 F---------VHFAEREDAVKAMKETNGKEL---DGSPIEVTLAKPVD 332 (506)
T ss_pred E---------EeecchHHHHHHHHHhcCcee---cCceEEEEecCChh
Confidence 9 999999999999999999987 67778888777766
No 25
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=4e-13 Score=143.09 Aligned_cols=87 Identities=21% Similarity=0.418 Sum_probs=78.4
Q ss_pred cchhhccCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEe-ccCC-CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeE
Q 003717 5 EAEAEVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIV-RTKG-RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGR 82 (800)
Q Consensus 5 eAe~Ev~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVI-RdTG-RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~ 82 (800)
+.++.....+||+|.|||+...+.||+.+|++||.|.+|.|| .++| +|||||+|++ .++|++|-.+|||..+.||+
T Consensus 88 t~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen--~~dadRARa~LHgt~VEGRk 165 (376)
T KOG0125|consen 88 TNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMEN--PADADRARAELHGTVVEGRK 165 (376)
T ss_pred CcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecC--hhhHHHHHHHhhcceeeceE
Confidence 344445567899999999999999999999999999999999 5555 8999999998 99999999999999999999
Q ss_pred EEEEeccchhh
Q 003717 83 LRLERAKEHYL 93 (800)
Q Consensus 83 LrVe~AKpr~~ 93 (800)
|+|..|.+|..
T Consensus 166 IEVn~ATarV~ 176 (376)
T KOG0125|consen 166 IEVNNATARVH 176 (376)
T ss_pred EEEeccchhhc
Confidence 99999988743
No 26
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=3.9e-13 Score=144.59 Aligned_cols=157 Identities=17% Similarity=0.367 Sum_probs=113.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc----CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT----KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd----TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
..+||||.+++.+.++.||..|..||+|+++.+-.+ +++||+||+|+- ++.|.-|++.|||..++||.|+|..-
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEv--PEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEV--PEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeC--cHHHHHHHHHhccccccCccccccCC
Confidence 579999999999999999999999999999998744 468999999998 99999999999999999999999843
Q ss_pred cchhhHHHhh--hHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceee---eccCCCCCcc-c
Q 003717 89 KEHYLARLKR--EWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKT---LPFCGTGKHK-Y 162 (800)
Q Consensus 89 Kpr~~~Rlkr--Eraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKs---Vp~pgTGK~K-Y 162 (800)
..+..... ..-+..++... .+. + .-.-.++.+ ++++..|..||+|.. .+.+.++.|| |
T Consensus 191 --sNmpQAQpiID~vqeeAk~fn-----RiY-------V-aSvHpDLSe-~DiKSVFEAFG~I~~C~LAr~pt~~~HkGy 254 (544)
T KOG0124|consen 191 --SNMPQAQPIIDMVQEEAKKFN-----RIY-------V-ASVHPDLSE-TDIKSVFEAFGEIVKCQLARAPTGRGHKGY 254 (544)
T ss_pred --CCCcccchHHHHHHHHHHhhh-----eEE-------e-eecCCCccH-HHHHHHHHhhcceeeEEeeccCCCCCccce
Confidence 22211110 00011111111 111 0 011234555 788888888888654 4556777887 7
Q ss_pred ccccccCCCCCcccccccchhhhhhhhc-----cCcccc
Q 003717 163 SFQRVEAPPLPKYFCDCEEHSAAFHAAE-----GKQIHH 196 (800)
Q Consensus 163 GF~~ve~Ps~pV~F~sfEea~aA~eAmN-----G~~i~n 196 (800)
|| +.|......+.|+..|| |+|+-+
T Consensus 255 Gf---------iEy~n~qs~~eAiasMNlFDLGGQyLRV 284 (544)
T KOG0124|consen 255 GF---------IEYNNLQSQSEAIASMNLFDLGGQYLRV 284 (544)
T ss_pred ee---------EEeccccchHHHhhhcchhhcccceEec
Confidence 77 78888888888888887 666655
No 27
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.31 E-value=3.9e-12 Score=134.10 Aligned_cols=133 Identities=19% Similarity=0.349 Sum_probs=104.7
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccchhh
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEHYL 93 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKpr~~ 93 (800)
.+|||||||..+++.+|+.+|++||.|.+|.|+++ ||||..++ ...+..||..|+|.+|+|..|+|+.++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN----YgFVHiEd--ktaaedairNLhgYtLhg~nInVeaSksKs- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN----YGFVHIED--KTAAEDAIRNLHGYTLHGVNINVEASKSKS- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc----cceEEeec--ccccHHHHhhcccceecceEEEEEeccccC-
Confidence 57999999999999999999999999999999864 99999996 999999999999999999999999887541
Q ss_pred HHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceeeeccCCCCCcc-cccccccCCCC
Q 003717 94 ARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPFCGTGKHK-YSFQRVEAPPL 172 (800)
Q Consensus 94 ~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKsVp~pgTGK~K-YGF~~ve~Ps~ 172 (800)
...+++++++ +...... ..+|.-|.+||.|..+ --.| |+|
T Consensus 76 ------------------------k~stkl~vgN-is~tctn-~ElRa~fe~ygpviec-----divkdy~f-------- 116 (346)
T KOG0109|consen 76 ------------------------KASTKLHVGN-ISPTCTN-QELRAKFEKYGPVIEC-----DIVKDYAF-------- 116 (346)
T ss_pred ------------------------CCccccccCC-CCccccC-HHHhhhhcccCCceee-----eeecceeE--------
Confidence 1123344443 2222322 7899999999997533 1124 888
Q ss_pred CcccccccchhhhhhhhccCc
Q 003717 173 PKYFCDCEEHSAAFHAAEGKQ 193 (800)
Q Consensus 173 pV~F~sfEea~aA~eAmNG~~ 193 (800)
|+|--.+++-.|...+++..
T Consensus 117 -vh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 117 -VHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred -EEEeeccchHHHHhcccccc
Confidence 78888888888886666443
No 28
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.28 E-value=1.2e-11 Score=129.44 Aligned_cols=75 Identities=17% Similarity=0.308 Sum_probs=69.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccC-CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccc
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK-GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKE 90 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdT-GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKp 90 (800)
.++|||||||+.+++++|+++|+.||.|.+|.|+++. .+|||||+|.+ .++|..|+. |||..|.|+.|+|..+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d--~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKD--PQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCc--HHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 4799999999999999999999999999999999764 47999999997 999999995 999999999999999864
No 29
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.3e-11 Score=134.51 Aligned_cols=153 Identities=16% Similarity=0.298 Sum_probs=115.7
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccC-C-CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccch
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK-G-RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEH 91 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdT-G-RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKpr 91 (800)
..|||.||+..++..+|.++|+.||.|.+|++.++. | +|| ||+|++ .+.|.+|+..|||..+.|++|.|..+..+
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~--e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFES--EESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCC--HHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 449999999999999999999999999999999553 3 799 999997 99999999999999999999999988765
Q ss_pred hhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceeeeccC--CCCCcc-ccccccc
Q 003717 92 YLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPFC--GTGKHK-YSFQRVE 168 (800)
Q Consensus 92 ~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKsVp~p--gTGK~K-YGF~~ve 168 (800)
..+.. .... . .+ .. .+..+.. +....+. ..|..+|+.||.|.++... ..|+++ |||
T Consensus 154 ~er~~-~~~~-~-~~-----~~-------t~v~vk~-~~~~~~~-~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gf---- 212 (369)
T KOG0123|consen 154 EEREA-PLGE-Y-KK-----RF-------TNVYVKN-LEEDSTD-EELKDLFSAYGSITSVAVMRDSIGKSKGFGF---- 212 (369)
T ss_pred hhhcc-cccc-h-hh-----hh-------hhhheec-cccccch-HHHHHhhcccCcceEEEEeecCCCCCCCccc----
Confidence 32211 1100 0 00 00 0111111 1122323 7999999999998876554 567765 777
Q ss_pred CCCCCcccccccchhhhhhhhccCccc
Q 003717 169 APPLPKYFCDCEEHSAAFHAAEGKQIH 195 (800)
Q Consensus 169 ~Ps~pV~F~sfEea~aA~eAmNG~~i~ 195 (800)
|.|..-+++..|++.|+|..+-
T Consensus 213 -----v~f~~~e~a~~av~~l~~~~~~ 234 (369)
T KOG0123|consen 213 -----VNFENPEDAKKAVETLNGKIFG 234 (369)
T ss_pred -----eeecChhHHHHHHHhccCCcCC
Confidence 8999999999999999988774
No 30
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=3.1e-11 Score=135.10 Aligned_cols=187 Identities=22% Similarity=0.252 Sum_probs=124.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccC-C--CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEecc
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK-G--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAK 89 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdT-G--RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AK 89 (800)
..+|.|.||||.+...+|+.+|+.||.|..|.|++.. + +|||||.|.. ..+|..|+..|||++|+||+|-|+||-
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~--~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKE--KKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEee--HHHHHHHHHhccCceecCceeEEeeec
Confidence 5799999999999999999999999999999998432 2 6999999997 999999999999999999999999996
Q ss_pred ch--hhHHH-------hh--hHHHHhh------h----------hCCCC-----------------CCCCCCC-------
Q 003717 90 EH--YLARL-------KR--EWAEDDA------Q----------LVNPP-----------------VTDSVAP------- 118 (800)
Q Consensus 90 pr--~~~Rl-------kr--Eraq~ra------k----------~~~sp-----------------~sD~Vd~------- 118 (800)
++ |.... +. ....+.. . ..... ..+.++.
T Consensus 195 ~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~ 274 (678)
T KOG0127|consen 195 DKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKK 274 (678)
T ss_pred ccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccC
Confidence 54 22200 00 0000000 0 00000 0000000
Q ss_pred ------CCC---------CcccCCCCCCCCCcchhhcccccCcccee---eeccCCCCCcc-cccccccCCCCCcccccc
Q 003717 119 ------DNK---------DATRLDTPKKLLDKDKKLNIFFPRLRKVK---TLPFCGTGKHK-YSFQRVEAPPLPKYFCDC 179 (800)
Q Consensus 119 ------~~~---------kl~is~~Lkksvdesd~LreyFskyGKVK---sVp~pgTGK~K-YGF~~ve~Ps~pV~F~sf 179 (800)
++. ...+.+.|+.++.+ +.|...|.+||.|+ +|..+.||.++ -+| |+|.+-
T Consensus 275 ~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tE-Eel~~~fskFG~v~ya~iV~~k~T~~skGtAF---------v~Fkt~ 344 (678)
T KOG0127|consen 275 ESDKKAQNKTTRENITEGKTVFVRNLPFDTTE-EELKEHFSKFGEVKYAIIVKDKDTGHSKGTAF---------VKFKTQ 344 (678)
T ss_pred cccchhccccccccccccceEEEecCCccccH-HHHHHHHHhhccceeEEEEeccCCCCcccceE---------EEeccH
Confidence 000 11222334555545 88999999999976 56778999987 566 788888
Q ss_pred cchhhhhhhh---ccCccccCCCCccccchhhhcC
Q 003717 180 EEHSAAFHAA---EGKQIHHPAAGQEEIHDMEELG 211 (800)
Q Consensus 180 Eea~aA~eAm---NG~~i~n~n~~q~~i~~~ee~~ 211 (800)
.++..+++++ +|---..+.|.|..|..+-.+.
T Consensus 345 ~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 345 IAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred HHHHHHHHhcCccCCCceEEEeccEEeeeeccchH
Confidence 8888887776 2222234555666665554444
No 31
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=2.1e-11 Score=127.36 Aligned_cols=175 Identities=19% Similarity=0.265 Sum_probs=120.2
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc--CC--CcEEEEEecCCCHHHHHHHHHhcCCcEeCC--eEE
Q 003717 10 VEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--KG--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKG--GRL 83 (800)
Q Consensus 10 v~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd--TG--RGFGFVEFeS~D~EdAekAIe~LNG~eLdG--R~L 83 (800)
.-...+|||.+||..+|..+|.++|++||.|..-+|+.+ ++ ||.|||.|.. ..+|+.||..|||..-.| .+|
T Consensus 124 ~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDK--r~EAe~AIk~lNG~~P~g~tepI 201 (360)
T KOG0145|consen 124 SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDK--RIEAEEAIKGLNGQKPSGCTEPI 201 (360)
T ss_pred hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecc--hhHHHHHHHhccCCCCCCCCCCe
Confidence 334679999999999999999999999999988888743 33 8999999998 999999999999998876 589
Q ss_pred EEEeccchhhHH-Hh------h----------hHHHHhh-----------hhCCCCCC-CCCCCCC-CCcc--cCCC---
Q 003717 84 RLERAKEHYLAR-LK------R----------EWAEDDA-----------QLVNPPVT-DSVAPDN-KDAT--RLDT--- 128 (800)
Q Consensus 84 rVe~AKpr~~~R-lk------r----------Eraq~ra-----------k~~~sp~s-D~Vd~~~-~kl~--is~~--- 128 (800)
.|++|....... .. . ..+..+- ....+|.. |....-. .++. .+..
T Consensus 202 tVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ci 281 (360)
T KOG0145|consen 202 TVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCI 281 (360)
T ss_pred EEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEE
Confidence 999984321100 00 0 0000000 00011111 1110000 0000 0000
Q ss_pred ----CCCCCCcchhhcccccCccc---eeeeccCCCCCcc-cccccccCCCCCcccccccchhhhhhhhccCcccc
Q 003717 129 ----PKKLLDKDKKLNIFFPRLRK---VKTLPFCGTGKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHH 196 (800)
Q Consensus 129 ----Lkksvdesd~LreyFskyGK---VKsVp~pgTGK~K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n 196 (800)
|..+.++ .-|+.+|+.||- ||++++..|.++| ||| |.+...+|+.-|+..+||-.+-+
T Consensus 282 FvYNLspd~de-~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgF---------VtMtNYdEAamAi~sLNGy~lg~ 347 (360)
T KOG0145|consen 282 FVYNLSPDADE-SILWQLFGPFGAVTNVKVIRDFTTNKCKGFGF---------VTMTNYDEAAMAIASLNGYRLGD 347 (360)
T ss_pred EEEecCCCchH-hHHHHHhCcccceeeEEEEecCCcccccceeE---------EEecchHHHHHHHHHhcCccccc
Confidence 2344444 778889999988 6789999999998 877 89999999999999999876643
No 32
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=1.2e-11 Score=141.22 Aligned_cols=156 Identities=21% Similarity=0.319 Sum_probs=108.1
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEec-cCC------CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEE
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR-TKG------RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLE 86 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIR-dTG------RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe 86 (800)
.+|||.||+|.+|.++|...|..+|.|.++.|.. ..+ .|||||+|.+ .++|..|+..|+|+.|+|+.|.|.
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~--~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAK--PESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecC--HHHHHHHHHHhcCceecCceEEEE
Confidence 3499999999999999999999999999998872 212 3999999997 999999999999999999999999
Q ss_pred eccchhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceeeeccCCC-CCcc-ccc
Q 003717 87 RAKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPFCGT-GKHK-YSF 164 (800)
Q Consensus 87 ~AKpr~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKsVp~pgT-GK~K-YGF 164 (800)
++..+..... ++ . .......+++.+.+ +++...- ..++.+|+.||.+++|++|-- |+.. +||
T Consensus 594 ~S~~k~~~~~--------gK-~-----~~~kk~~tKIlVRN-ipFeAt~-rEVr~LF~aFGqlksvRlPKK~~k~a~rGF 657 (725)
T KOG0110|consen 594 ISENKPASTV--------GK-K-----KSKKKKGTKILVRN-IPFEATK-REVRKLFTAFGQLKSVRLPKKIGKGAHRGF 657 (725)
T ss_pred eccCcccccc--------cc-c-----cccccccceeeeec-cchHHHH-HHHHHHHhcccceeeeccchhhcchhhccc
Confidence 9862211100 00 0 00111123343322 3333322 889999999999999988732 3322 344
Q ss_pred ccccCCCCCcccccccchhhhhhhhccCcc
Q 003717 165 QRVEAPPLPKYFCDCEEHSAAFHAAEGKQI 194 (800)
Q Consensus 165 ~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i 194 (800)
+ .|.|.+-.++..|++++..-|+
T Consensus 658 ~-------Fv~f~t~~ea~nA~~al~STHl 680 (725)
T KOG0110|consen 658 G-------FVDFLTPREAKNAFDALGSTHL 680 (725)
T ss_pred e-------eeeccCcHHHHHHHHhhcccce
Confidence 2 2555555566667766664443
No 33
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.22 E-value=5.8e-11 Score=97.54 Aligned_cols=67 Identities=30% Similarity=0.617 Sum_probs=60.1
Q ss_pred EEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccC---CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEE
Q 003717 16 IYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK---GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLR 84 (800)
Q Consensus 16 LFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdT---GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~Lr 84 (800)
|||+|||+.+++++|+++|+.||.|..+.++..+ .+|+|||+|.+ .++|.+|+..++|..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~--~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSS--EEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESS--HHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCC--HHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999998542 36999999997 9999999999999999999985
No 34
>smart00362 RRM_2 RNA recognition motif.
Probab=99.21 E-value=8.1e-11 Score=92.28 Aligned_cols=70 Identities=31% Similarity=0.622 Sum_probs=64.3
Q ss_pred EEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccC--CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEE
Q 003717 15 RIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK--GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLE 86 (800)
Q Consensus 15 TLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdT--GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe 86 (800)
+|||+|||..++.++|+++|.+||.|..+.+++.. .+|+|||+|.+ .++|..|+..++|..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~--~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFES--EEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCC--HHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999888543 47999999997 999999999999999999999873
No 35
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=3.1e-11 Score=131.57 Aligned_cols=138 Identities=22% Similarity=0.297 Sum_probs=112.8
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc-CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccchh
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT-KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEHY 92 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd-TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKpr~ 92 (800)
..|||| +.+|+..|.++|+.+|+|.+++|+++ ++-|||||.|.+ ..+|++|+.+||...+.|++|+|-|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~--~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQ--PADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCC--HHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 469999 99999999999999999999999965 445999999997 999999999999999999999999875321
Q ss_pred hHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceeeeccC--CCCCcccccccccCC
Q 003717 93 LARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPFC--GTGKHKYSFQRVEAP 170 (800)
Q Consensus 93 ~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKsVp~p--gTGK~KYGF~~ve~P 170 (800)
. . +++.+ |..+++. ..|..+|+.||+|.++... ..| .|++|
T Consensus 77 ~-------------------~---------~~i~n-l~~~~~~-~~~~d~f~~~g~ilS~kv~~~~~g-~kg~F------ 119 (369)
T KOG0123|consen 77 S-------------------L---------VFIKN-LDESIDN-KSLYDTFSEFGNILSCKVATDENG-SKGYF------ 119 (369)
T ss_pred c-------------------e---------eeecC-CCcccCc-HHHHHHHHhhcCeeEEEEEEcCCC-ceeeE------
Confidence 0 0 23322 4555655 8999999999997765443 334 56228
Q ss_pred CCCcccccccchhhhhhhhccCcccc
Q 003717 171 PLPKYFCDCEEHSAAFHAAEGKQIHH 196 (800)
Q Consensus 171 s~pV~F~sfEea~aA~eAmNG~~i~n 196 (800)
|+|.+-+++..|++.+||..++.
T Consensus 120 ---V~f~~e~~a~~ai~~~ng~ll~~ 142 (369)
T KOG0123|consen 120 ---VQFESEESAKKAIEKLNGMLLNG 142 (369)
T ss_pred ---EEeCCHHHHHHHHHHhcCcccCC
Confidence 89999999999999999998865
No 36
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.19 E-value=9e-11 Score=111.12 Aligned_cols=76 Identities=34% Similarity=0.615 Sum_probs=70.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc--C--CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--K--GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd--T--GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
..+|||||||+.+++++|+++|.+||.|..+.+..+ + .+|||||+|.+ .++|..|+..|+|..|.|++|.|..+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~--~~~~~~a~~~~~~~~~~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFES--EESAEKAIEELNGKELEGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecC--HHHHHHHHHHcCCCeECCceeEeecc
Confidence 489999999999999999999999999999998854 2 37999999997 99999999999999999999999996
Q ss_pred cc
Q 003717 89 KE 90 (800)
Q Consensus 89 Kp 90 (800)
.+
T Consensus 193 ~~ 194 (306)
T COG0724 193 QP 194 (306)
T ss_pred cc
Confidence 53
No 37
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=3.4e-11 Score=124.11 Aligned_cols=74 Identities=23% Similarity=0.469 Sum_probs=65.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc--CC--CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--KG--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd--TG--RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
-++||||||+|.+..+.|+++|++||+|+++.||.| ++ +|||||+|.+ .+.|.+|+...| -.|+||+-.|..|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d--~~aa~rAc~dp~-piIdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRD--AEAATRACKDPN-PIIDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeec--HHHHHHHhcCCC-Ccccccccccchh
Confidence 478999999999999999999999999999999954 33 6999999995 999999998654 5789999999887
Q ss_pred c
Q 003717 89 K 89 (800)
Q Consensus 89 K 89 (800)
-
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 3
No 38
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.17 E-value=7.8e-11 Score=135.39 Aligned_cols=78 Identities=22% Similarity=0.451 Sum_probs=71.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc--C--CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEe
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--K--GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLER 87 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd--T--GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~ 87 (800)
...+||||||++.+++++|+++|+.||.|.+|+|+++ + .||||||+|.+ .++|.+|+..|||..|+|+.|+|.+
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~--~e~A~kAI~amNg~elgGr~LrV~k 280 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN--LQSQSEAIASMNLFDLGGQYLRVGK 280 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECC--HHHHHHHHHHhCCCeeCCeEEEEEe
Confidence 3479999999999999999999999999999999954 2 47999999997 9999999999999999999999999
Q ss_pred ccch
Q 003717 88 AKEH 91 (800)
Q Consensus 88 AKpr 91 (800)
|.+.
T Consensus 281 Ai~p 284 (612)
T TIGR01645 281 CVTP 284 (612)
T ss_pred cCCC
Confidence 8754
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.17 E-value=1.2e-10 Score=133.30 Aligned_cols=75 Identities=25% Similarity=0.407 Sum_probs=69.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcC--CceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEecc
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSL--GEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAK 89 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqF--G~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AK 89 (800)
..++|||+||++.+++++|+++|++| |.|.+|.++ ++||||+|.+ .++|.+|+..|||..|+|+.|+|.+|+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s--~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFED--REDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCC--HHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 35789999999999999999999999 999999875 4699999997 999999999999999999999999998
Q ss_pred chh
Q 003717 90 EHY 92 (800)
Q Consensus 90 pr~ 92 (800)
|..
T Consensus 306 p~~ 308 (578)
T TIGR01648 306 PVD 308 (578)
T ss_pred CCC
Confidence 863
No 40
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=4.5e-11 Score=114.53 Aligned_cols=81 Identities=15% Similarity=0.360 Sum_probs=72.1
Q ss_pred hhhccCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEec----cCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeE
Q 003717 7 EAEVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR----TKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGR 82 (800)
Q Consensus 7 e~Ev~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIR----dTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~ 82 (800)
....+...+||||||++-+++++|.++|+.+|.|..|.|-. .+..|||||+|.+ .++|..|+.-++|..|+.++
T Consensus 30 ~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~--~~dA~~AlryisgtrLddr~ 107 (153)
T KOG0121|consen 30 LEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYS--RDDAEDALRYISGTRLDDRP 107 (153)
T ss_pred HHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEec--chhHHHHHHHhccCcccccc
Confidence 34556788999999999999999999999999999986652 2457999999998 99999999999999999999
Q ss_pred EEEEecc
Q 003717 83 LRLERAK 89 (800)
Q Consensus 83 LrVe~AK 89 (800)
|+|++.-
T Consensus 108 ir~D~D~ 114 (153)
T KOG0121|consen 108 IRIDWDA 114 (153)
T ss_pred eeeeccc
Confidence 9999853
No 41
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.14 E-value=1.3e-10 Score=125.72 Aligned_cols=78 Identities=29% Similarity=0.538 Sum_probs=70.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc--CC--CcEEEEEecCCCHHHHHHHHHhcCCcEeCC--eEEEE
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--KG--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKG--GRLRL 85 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd--TG--RGFGFVEFeS~D~EdAekAIe~LNG~eLdG--R~LrV 85 (800)
..++|||+|||+.+|+++|+++|++||.|..|.|+++ ++ +|||||+|.+ .++|++||..||++.+.| ++|+|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~--~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNK--REEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECC--HHHHHHHHHHhCCCccCCCceeEEE
Confidence 3578999999999999999999999999999999855 33 6999999997 999999999999999976 79999
Q ss_pred Eeccch
Q 003717 86 ERAKEH 91 (800)
Q Consensus 86 e~AKpr 91 (800)
.+|..+
T Consensus 270 ~~a~~~ 275 (346)
T TIGR01659 270 RLAEEH 275 (346)
T ss_pred EECCcc
Confidence 998765
No 42
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.4e-10 Score=120.34 Aligned_cols=81 Identities=26% Similarity=0.509 Sum_probs=74.3
Q ss_pred hccCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc--CC--CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEE
Q 003717 9 EVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--KG--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLR 84 (800)
Q Consensus 9 Ev~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd--TG--RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~Lr 84 (800)
+.+...+|-|.||+.++++++|+++|..||.|..|.+.++ +| ||||||.|.+ .++|.+||..|||+-++.-.|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~s--RddA~rAI~~LnG~gyd~LILr 262 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFES--RDDAARAIADLNGYGYDNLILR 262 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEec--HHHHHHHHHHccCcccceEEEE
Confidence 3345678999999999999999999999999999999854 45 7999999997 9999999999999999999999
Q ss_pred EEeccch
Q 003717 85 LERAKEH 91 (800)
Q Consensus 85 Ve~AKpr 91 (800)
|+|++|+
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9999986
No 43
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1.1e-10 Score=116.47 Aligned_cols=79 Identities=27% Similarity=0.495 Sum_probs=70.9
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccc
Q 003717 11 EEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKE 90 (800)
Q Consensus 11 ~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKp 90 (800)
.-.++||||||+..++..+|..+|..||.|..|-|.+ ...|||||+|+. ..+|+.|+..|+|..|+|..|+|++..-
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed--~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFED--PRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccC--cccHHHHHhhcCCccccCceEEEEeecC
Confidence 3468999999999999999999999999999886655 467999999996 9999999999999999999999999865
Q ss_pred hh
Q 003717 91 HY 92 (800)
Q Consensus 91 r~ 92 (800)
++
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 53
No 44
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.12 E-value=7.5e-11 Score=120.13 Aligned_cols=85 Identities=29% Similarity=0.499 Sum_probs=77.3
Q ss_pred ccchhhccCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccC----CCcEEEEEecCCCHHHHHHHHHhcCCcEeC
Q 003717 4 KEAEAEVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK----GRSFGYVDFFPSSHKSLSKLFSTYNGCVWK 79 (800)
Q Consensus 4 keAe~Ev~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdT----GRGFGFVEFeS~D~EdAekAIe~LNG~eLd 79 (800)
.--+++++.+..|-|-||.+.++.++|+.+|++||.|-+|.|.++. .+|||||-|.. ..+|+.|+++|+|.+|+
T Consensus 4 g~~PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~--k~daedA~damDG~~ld 81 (256)
T KOG4207|consen 4 GRPPPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHD--KRDAEDALDAMDGAVLD 81 (256)
T ss_pred CCCCCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeee--cchHHHHHHhhcceeec
Confidence 3346788888999999999999999999999999999999999663 37999999996 99999999999999999
Q ss_pred CeEEEEEeccc
Q 003717 80 GGRLRLERAKE 90 (800)
Q Consensus 80 GR~LrVe~AKp 90 (800)
|+.|+|.+|+-
T Consensus 82 gRelrVq~ary 92 (256)
T KOG4207|consen 82 GRELRVQMARY 92 (256)
T ss_pred cceeeehhhhc
Confidence 99999999863
No 45
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.7e-11 Score=122.51 Aligned_cols=78 Identities=29% Similarity=0.538 Sum_probs=72.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEec----cCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEe
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR----TKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLER 87 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIR----dTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~ 87 (800)
+.++||||+|...+++.-|...|-.||.|.++.++. .++||||||+|.. .++|.+||..||+.+|.||.|+|.+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~--aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEE--AEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeec--cchhHHHhhcCchhhhcceeEEEee
Confidence 357999999999999999999999999999999983 3679999999997 9999999999999999999999999
Q ss_pred ccch
Q 003717 88 AKEH 91 (800)
Q Consensus 88 AKpr 91 (800)
|+|.
T Consensus 87 AkP~ 90 (298)
T KOG0111|consen 87 AKPE 90 (298)
T ss_pred cCCc
Confidence 9885
No 46
>smart00360 RRM RNA recognition motif.
Probab=99.08 E-value=4.4e-10 Score=87.60 Aligned_cols=67 Identities=31% Similarity=0.629 Sum_probs=61.0
Q ss_pred EeCCCCCCCHHHHHHhhhcCCceeEEEEeccC----CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEE
Q 003717 18 VGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK----GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLE 86 (800)
Q Consensus 18 VGNLP~nVTEEDLrelFSqFG~VksVrVIRdT----GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe 86 (800)
|+|||..+++++|+++|.+||.|..+.+.... .+|||||+|.+ .++|..|+..|++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~--~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFES--EEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCC--HHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999888542 37999999997 999999999999999999999873
No 47
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.08 E-value=4.2e-10 Score=116.84 Aligned_cols=75 Identities=24% Similarity=0.317 Sum_probs=68.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCC-CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEecc
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKG-RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAK 89 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTG-RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AK 89 (800)
...+|||+||++.+|+++|+++|+.||.|.+|+|+++.. +|||||+|.+ .+++..|+ .|+|..|.+++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d--~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKD--AYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECC--HHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 357999999999999999999999999999999997643 5899999996 89998888 699999999999998764
No 48
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.06 E-value=1e-09 Score=86.41 Aligned_cols=71 Identities=37% Similarity=0.639 Sum_probs=65.2
Q ss_pred EEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccC---CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEe
Q 003717 15 RIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK---GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLER 87 (800)
Q Consensus 15 TLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdT---GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~ 87 (800)
+|||+|||+.+++++|+++|..||.|..+.+.... ++|+|||+|.+ .++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s--~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFED--EEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECC--HHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999988543 47999999998 9999999999999999999998863
No 49
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=3.2e-10 Score=124.57 Aligned_cols=87 Identities=24% Similarity=0.445 Sum_probs=75.5
Q ss_pred ccchhhccC---CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc---CCCcEEEEEecCCCHHHHHHHHHhcCCc-
Q 003717 4 KEAEAEVEE---QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT---KGRSFGYVDFFPSSHKSLSKLFSTYNGC- 76 (800)
Q Consensus 4 keAe~Ev~q---srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd---TGRGFGFVEFeS~D~EdAekAIe~LNG~- 76 (800)
+-|+.|.+. .++||||.|+..+++.+++++|++||.|.+|.|+|+ ..||||||.|.+ .+.|..||+.|||.
T Consensus 112 k~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fst--ke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 112 KYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFST--KEMAVAAIKALNGTQ 189 (510)
T ss_pred cccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEeh--HHHHHHHHHhhccce
Confidence 445555554 689999999999999999999999999999999976 459999999998 99999999999995
Q ss_pred EeCC--eEEEEEeccchh
Q 003717 77 VWKG--GRLRLERAKEHY 92 (800)
Q Consensus 77 eLdG--R~LrVe~AKpr~ 92 (800)
++.| .+|.|+||.+..
T Consensus 190 tmeGcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQK 207 (510)
T ss_pred eeccCCCceEEEecccCC
Confidence 5555 699999997653
No 50
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=4.9e-09 Score=97.82 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=70.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccC-CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccch
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK-GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEH 91 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdT-GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKpr 91 (800)
.+-|||.|||+.+|.+++.++|++||.|..++|-... -||-|||.|+. ..+|.+|+..|+|..++++.|.|-+-++.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYed--i~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYED--IFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehH--hhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 4789999999999999999999999999999986443 38999999996 99999999999999999999999987764
No 51
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.95 E-value=3.4e-09 Score=84.85 Aligned_cols=56 Identities=36% Similarity=0.620 Sum_probs=51.0
Q ss_pred HHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 30 LAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 30 LrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
|+++|++||.|..+.+.+.. +|+|||+|.+ .++|..|+..|||..++|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~--~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFAS--VEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESS--HHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECC--HHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999988654 7999999997 99999999999999999999999986
No 52
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=3.2e-10 Score=113.84 Aligned_cols=77 Identities=26% Similarity=0.549 Sum_probs=70.2
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc--CC--CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEE
Q 003717 11 EEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--KG--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLE 86 (800)
Q Consensus 11 ~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd--TG--RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe 86 (800)
....-|||||||+..|+.||.-.|++||.|++|.++|+ || +||||+.|+. .....-|+..|||..|.||.|+|+
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYED--QRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYED--QRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecC--ccceEEEEeccCCceecceeEEee
Confidence 34678999999999999999999999999999999976 44 6999999995 999999999999999999999999
Q ss_pred ecc
Q 003717 87 RAK 89 (800)
Q Consensus 87 ~AK 89 (800)
...
T Consensus 111 Hv~ 113 (219)
T KOG0126|consen 111 HVS 113 (219)
T ss_pred ecc
Confidence 753
No 53
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=2.2e-09 Score=118.44 Aligned_cols=78 Identities=26% Similarity=0.402 Sum_probs=72.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccch
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEH 91 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKpr 91 (800)
+.+-|||.||+.+||++.|+++|.+||.|..|..++| ||||.|.. .++|.+||+.+||++|+|..|.|.+|+|.
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~e--R~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAE--REDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecc--hHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 4568999999999999999999999999999988766 99999997 99999999999999999999999999997
Q ss_pred hhHH
Q 003717 92 YLAR 95 (800)
Q Consensus 92 ~~~R 95 (800)
...+
T Consensus 332 ~k~k 335 (506)
T KOG0117|consen 332 DKKK 335 (506)
T ss_pred hhhc
Confidence 5443
No 54
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=3.8e-09 Score=112.22 Aligned_cols=79 Identities=14% Similarity=0.441 Sum_probs=71.7
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc--C--CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEE
Q 003717 11 EEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--K--GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLE 86 (800)
Q Consensus 11 ~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd--T--GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe 86 (800)
++-+||||+-|++.+++..|+..|+.||.|..++|+++ + .+|||||+|.. ..+...|....+|..|+|+.|.|+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~--erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEH--ERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEecc--HHHHHHHHHhccCceecCcEEEEE
Confidence 34589999999999999999999999999999999955 3 47999999996 999999999999999999999999
Q ss_pred eccch
Q 003717 87 RAKEH 91 (800)
Q Consensus 87 ~AKpr 91 (800)
.-..+
T Consensus 177 vERgR 181 (335)
T KOG0113|consen 177 VERGR 181 (335)
T ss_pred ecccc
Confidence 86544
No 55
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=2.1e-09 Score=108.44 Aligned_cols=77 Identities=22% Similarity=0.504 Sum_probs=69.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccC-CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccc
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK-GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKE 90 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdT-GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKp 90 (800)
...+|||||||.++.+.+|.++|.+||.|..|.+.... ..+||||+|+. ..+|+.||..-+|..++|..|+|+++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd--~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFED--PRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecC--ccchhhhhhcccccccCcceEEEEeccC
Confidence 45799999999999999999999999999999886333 36899999995 9999999999999999999999999864
No 56
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=4.2e-09 Score=110.80 Aligned_cols=76 Identities=22% Similarity=0.461 Sum_probs=71.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccch
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEH 91 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKpr 91 (800)
..++|||||++..+++++||+.|+.||.|.+|+|.+ -+||+||.|.+ .|.|..||..||+.++.|..+++.|.+..
T Consensus 163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~t--kEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFET--KEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred CCceEEeCCcCccccHHHHHHhcccCCcceEEEEec--ccceEEEEecc--hhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 357999999999999999999999999999999976 57999999998 99999999999999999999999998754
No 57
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.85 E-value=5.3e-09 Score=116.53 Aligned_cols=77 Identities=25% Similarity=0.581 Sum_probs=71.5
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEe--ccCC--CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEecc
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIV--RTKG--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAK 89 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqFG~VksVrVI--RdTG--RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AK 89 (800)
..+||||+|+++++++|..+|+..|.|.+++++ +++| +||||++|.. .++|..|++.|||.++.||+|+|.++.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~--~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTD--EETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCc--hhhHHHHHHhcCCcccCCceEEeeccc
Confidence 789999999999999999999999999999999 4455 7999999996 999999999999999999999999997
Q ss_pred chh
Q 003717 90 EHY 92 (800)
Q Consensus 90 pr~ 92 (800)
.+.
T Consensus 97 ~~~ 99 (435)
T KOG0108|consen 97 NRK 99 (435)
T ss_pred ccc
Confidence 653
No 58
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.81 E-value=1.6e-08 Score=104.01 Aligned_cols=81 Identities=25% Similarity=0.468 Sum_probs=72.4
Q ss_pred hccCCcEEEEeCCCCCCCHHHHHH----hhhcCCceeEEEEe-ccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEE
Q 003717 9 EVEEQTRIYVGGLGEKVTDDDLAK----VFSSLGEVKAVDIV-RTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRL 83 (800)
Q Consensus 9 Ev~qsrTLFVGNLP~nVTEEDLre----lFSqFG~VksVrVI-RdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~L 83 (800)
+..+..||||.||+..+..++|++ +|++||.|..|.+. +.+.||-|||.|.. .+.|..|+..|+|..+.|+++
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~--~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKE--TEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecC--hhHHHHHHHHhcCCcccCchh
Confidence 445556999999999999999888 99999999998877 34569999999997 999999999999999999999
Q ss_pred EEEeccch
Q 003717 84 RLERAKEH 91 (800)
Q Consensus 84 rVe~AKpr 91 (800)
+|.+|+..
T Consensus 83 riqyA~s~ 90 (221)
T KOG4206|consen 83 RIQYAKSD 90 (221)
T ss_pred heecccCc
Confidence 99999754
No 59
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=1.3e-08 Score=98.65 Aligned_cols=76 Identities=24% Similarity=0.459 Sum_probs=70.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEe--ccCC--CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEe
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIV--RTKG--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLER 87 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVI--RdTG--RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~ 87 (800)
...-|||.++...++++++.+.|..||.|+.+.+- +.+| +||+.|+|++ .+.|++|+..|||..|.|+.|.|+|
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet--~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYET--LKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHh--HHHHHHHHHhccchhhhCCceeEEE
Confidence 46789999999999999999999999999999887 4456 7999999998 9999999999999999999999999
Q ss_pred cc
Q 003717 88 AK 89 (800)
Q Consensus 88 AK 89 (800)
+-
T Consensus 149 ~F 150 (170)
T KOG0130|consen 149 CF 150 (170)
T ss_pred EE
Confidence 84
No 60
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.71 E-value=1.1e-08 Score=115.20 Aligned_cols=157 Identities=18% Similarity=0.315 Sum_probs=114.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccC----CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK----GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdT----GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
.+++|+-.|+..++.-+|.++|+.+|.|..|++|.++ .+|.|||+|.. ......|| .|.|..+.|.+|.|...
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D--~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCD--EQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEec--ccchhhHh-hhcCCcccCceeEeccc
Confidence 5789999999999999999999999999999999542 36999999995 77777777 79999999999999865
Q ss_pred cchhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCc-ccCCCCCCCCCcchhhcccccCccceeeecc---CCCCCcc-cc
Q 003717 89 KEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDA-TRLDTPKKLLDKDKKLNIFFPRLRKVKTLPF---CGTGKHK-YS 163 (800)
Q Consensus 89 Kpr~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl-~is~~Lkksvdesd~LreyFskyGKVKsVp~---pgTGK~K-YG 163 (800)
.... .+++. ..+...+.....+-. ...+.|-..+++ ++++.+|..||+|..|.+ ..||..| ||
T Consensus 256 Eaek------nr~a~-----~s~a~~~k~~~~p~~rl~vgnLHfNite-~~lr~ifepfg~Ie~v~l~~d~~tG~skgfG 323 (549)
T KOG0147|consen 256 EAEK------NRAAN-----ASPALQGKGFTGPMRRLYVGNLHFNITE-DMLRGIFEPFGKIENVQLTKDSETGRSKGFG 323 (549)
T ss_pred HHHH------HHHHh-----ccccccccccccchhhhhhcccccCchH-HHHhhhccCcccceeeeeccccccccccCcc
Confidence 3211 11111 111111100000001 122334556656 899999999999876543 4599998 66
Q ss_pred cccccCCCCCcccccccchhhhhhhhccCc
Q 003717 164 FQRVEAPPLPKYFCDCEEHSAAFHAAEGKQ 193 (800)
Q Consensus 164 F~~ve~Ps~pV~F~sfEea~aA~eAmNG~~ 193 (800)
| +.|..-+.+..|++.|||..
T Consensus 324 f---------i~f~~~~~ar~a~e~lngfe 344 (549)
T KOG0147|consen 324 F---------ITFVNKEDARKALEQLNGFE 344 (549)
T ss_pred e---------EEEecHHHHHHHHHHhccce
Confidence 6 78999999999999999933
No 61
>smart00361 RRM_1 RNA recognition motif.
Probab=98.65 E-value=9.2e-08 Score=80.61 Aligned_cols=57 Identities=25% Similarity=0.452 Sum_probs=49.6
Q ss_pred HHHHHHhhh----cCCceeEEE-Ee--ccC----CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEE
Q 003717 27 DDDLAKVFS----SLGEVKAVD-IV--RTK----GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRL 85 (800)
Q Consensus 27 EEDLrelFS----qFG~VksVr-VI--RdT----GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrV 85 (800)
+++|+++|+ .||.|.++. |+ +.+ .+|||||.|.+ .++|.+|+..|||..+.||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~--~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFER--SEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECC--HHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999995 43 322 38999999997 99999999999999999999986
No 62
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=3.3e-08 Score=101.64 Aligned_cols=150 Identities=20% Similarity=0.380 Sum_probs=105.6
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccchhh
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEHYL 93 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKpr~~ 93 (800)
.++|||+||+.+.+.+|..+|..||.|.+|.+ -.|||||+|.. ..+|..|+..+||..|.|-.+.|++|+...-
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m----k~gf~fv~fed--~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM----KNGFGFVEFED--PRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee----ecccceeccCc--hhhhhcccchhcCceecceeeeeeccccccc
Confidence 57999999999999999999999999999877 34899999995 9999999999999999999999999875421
Q ss_pred HHHhhhHHHHhhhhCCCCCCC-C---C----CCCCCC-cccCCCCCCCCCcchhhcccccCccceeeeccCCCCCccccc
Q 003717 94 ARLKREWAEDDAQLVNPPVTD-S---V----APDNKD-ATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPFCGTGKHKYSF 164 (800)
Q Consensus 94 ~RlkrEraq~rak~~~sp~sD-~---V----d~~~~k-l~is~~Lkksvdesd~LreyFskyGKVKsVp~pgTGK~KYGF 164 (800)
.+ ..+... . . -+.... ..+...+...+.. .+|..+|..+|.+..... ...++|
T Consensus 76 ~~-------------g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~-qdl~d~~~~~g~~~~~~~----~~~~~~ 137 (216)
T KOG0106|consen 76 GR-------------GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSW-QDLKDHFRPAGEVTYVDA----RRNFAF 137 (216)
T ss_pred cc-------------CCCCCCCccchhhccCCcccccceeeeccchhhhhH-HHHhhhhcccCCCchhhh----hccccc
Confidence 11 000000 0 0 000000 0111112222222 789999999999843211 222344
Q ss_pred ccccCCCCCcccccccchhhhhhhhccCcccc
Q 003717 165 QRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHH 196 (800)
Q Consensus 165 ~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n 196 (800)
|.|..-++++.|++.++|..+-.
T Consensus 138 ---------v~Fs~~~da~ra~~~l~~~~~~~ 160 (216)
T KOG0106|consen 138 ---------VEFSEQEDAKRALEKLDGKKLNG 160 (216)
T ss_pred ---------eeehhhhhhhhcchhccchhhcC
Confidence 89999999999999988776644
No 63
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.59 E-value=5.4e-08 Score=109.70 Aligned_cols=75 Identities=27% Similarity=0.595 Sum_probs=68.4
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc--CC--CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEecc
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--KG--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAK 89 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd--TG--RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AK 89 (800)
.+||||||.+++++++|+.+|+.||.|..|.++++ +| +|||||+|.. .++|.+|+..|||.+|-||.|+|..-.
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~--~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVN--KEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEec--HHHHHHHHHHhccceecCceEEEEEee
Confidence 34999999999999999999999999999999865 56 6999999997 999999999999999999999997654
Q ss_pred c
Q 003717 90 E 90 (800)
Q Consensus 90 p 90 (800)
.
T Consensus 357 ~ 357 (549)
T KOG0147|consen 357 E 357 (549)
T ss_pred e
Confidence 3
No 64
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.59 E-value=4.3e-08 Score=104.19 Aligned_cols=74 Identities=20% Similarity=0.431 Sum_probs=69.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccch
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEH 91 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKpr 91 (800)
..++||||||.+.++..+|+..|++||+|.+|.|++ +|+||.|.. .++|..|+..||+.+++|++|+|..+..|
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk----dy~fvh~d~--~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK----DYAFVHFDR--AEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeec----ceeEEEEee--ccchHHHHhcccccccccceeeeeeeccc
Confidence 467999999999999999999999999999999876 599999998 99999999999999999999999998765
No 65
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.54 E-value=9.5e-08 Score=107.98 Aligned_cols=77 Identities=25% Similarity=0.477 Sum_probs=70.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccC---C-CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK---G-RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdT---G-RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
.++|||.+|+..+...+|+.+|++||.|+.+.|+++. | |+||||++.+ .++|.+||..|+.++|.|+.|-|+.|
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSt--s~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMST--SAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecc--hHHHHHHHHHhhhhhhcceeeeeeec
Confidence 5799999999999999999999999999999999542 3 7999999998 99999999999999999999999998
Q ss_pred cch
Q 003717 89 KEH 91 (800)
Q Consensus 89 Kpr 91 (800)
+..
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 754
No 66
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.53 E-value=1.9e-07 Score=101.03 Aligned_cols=80 Identities=24% Similarity=0.495 Sum_probs=70.6
Q ss_pred hhhccCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHh-cCCcEeCCeEEEE
Q 003717 7 EAEVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFST-YNGCVWKGGRLRL 85 (800)
Q Consensus 7 e~Ev~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~-LNG~eLdGR~LrV 85 (800)
.++....++||||+|...+++.+|++.|.+||.|..++++. ++|+|||+|.+ ..+|+.|... +|...|+|++|.|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftT--R~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTT--REAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehh--hHHHHHHHHhhcceeeecceEEEE
Confidence 45566678999999999999999999999999999998875 56799999998 8888888765 6667889999999
Q ss_pred Eeccc
Q 003717 86 ERAKE 90 (800)
Q Consensus 86 e~AKp 90 (800)
.|+.+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99988
No 67
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=1.1e-07 Score=109.75 Aligned_cols=79 Identities=29% Similarity=0.503 Sum_probs=72.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc----CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT----KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd----TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
..+|.|.|||+..+-.+++.+|..||.|.+|+++.. .+||||||+|-+ ..+|.+|+..|.++.|.||+|.++||
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t--~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLT--PREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccC--cHHHHHHHHhhcccceechhhheehh
Confidence 579999999999999999999999999999999833 358999999998 99999999999999999999999999
Q ss_pred cchhh
Q 003717 89 KEHYL 93 (800)
Q Consensus 89 Kpr~~ 93 (800)
+....
T Consensus 691 ~~d~~ 695 (725)
T KOG0110|consen 691 KSDNT 695 (725)
T ss_pred ccchH
Confidence 87654
No 68
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=1.9e-07 Score=98.53 Aligned_cols=89 Identities=20% Similarity=0.464 Sum_probs=75.5
Q ss_pred CCcccchhhccC--CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc---CCCcEEEEEecCCCHHHHHHHHHhcCC
Q 003717 1 MEKKEAEAEVEE--QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT---KGRSFGYVDFFPSSHKSLSKLFSTYNG 75 (800)
Q Consensus 1 mEKkeAe~Ev~q--srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd---TGRGFGFVEFeS~D~EdAekAIe~LNG 75 (800)
|+-|.|+.|.+. .++||||-|...-.|+|++++|..||.|.+|.+.+. ..+||+||.|.+ ..+|..||..|+|
T Consensus 5 iqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s--~~eAqaAI~aLHg 82 (371)
T KOG0146|consen 5 IQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSS--HAEAQAAINALHG 82 (371)
T ss_pred ccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEecc--chHHHHHHHHhcc
Confidence 456677766663 679999999999999999999999999999999954 358999999998 9999999999999
Q ss_pred cEe-CC--eEEEEEeccch
Q 003717 76 CVW-KG--GRLRLERAKEH 91 (800)
Q Consensus 76 ~eL-dG--R~LrVe~AKpr 91 (800)
..- -| ..|.|++|...
T Consensus 83 SqTmpGASSSLVVK~ADTd 101 (371)
T KOG0146|consen 83 SQTMPGASSSLVVKFADTD 101 (371)
T ss_pred cccCCCCccceEEEeccch
Confidence 644 34 68999998544
No 69
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.48 E-value=2e-07 Score=108.31 Aligned_cols=75 Identities=19% Similarity=0.448 Sum_probs=70.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccch
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEH 91 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKpr 91 (800)
.+|||||+|+.++++.+|..+|+.||.|.+|.++. .||||||.+.. ..+|.+|+.+|+.+.+.++.|+|.||...
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~--RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVR--RQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEee--hhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 57999999999999999999999999999998865 68999999997 99999999999999999999999999543
No 70
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.42 E-value=1.7e-07 Score=98.87 Aligned_cols=80 Identities=20% Similarity=0.381 Sum_probs=72.2
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEe--ccC--CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEE
Q 003717 11 EEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIV--RTK--GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLE 86 (800)
Q Consensus 11 ~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVI--RdT--GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe 86 (800)
....+|||-.||.+..+.+|..+|-.||.|++.+|. |.+ .++||||.|.+ ...|+.||..|||..|+-++|+|.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN--p~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN--PASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC--chhHHHHHHHhcchhhhhhhhhhh
Confidence 357899999999999999999999999999999887 333 47999999998 999999999999999999999998
Q ss_pred eccchh
Q 003717 87 RAKEHY 92 (800)
Q Consensus 87 ~AKpr~ 92 (800)
.-+|+.
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 877764
No 71
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.41 E-value=1.6e-06 Score=89.88 Aligned_cols=80 Identities=20% Similarity=0.386 Sum_probs=67.2
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEe-ccCC----CcEEEEEecCCCHHHHHHHHHhcCCcEeC---Ce
Q 003717 10 VEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIV-RTKG----RSFGYVDFFPSSHKSLSKLFSTYNGCVWK---GG 81 (800)
Q Consensus 10 v~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVI-RdTG----RGFGFVEFeS~D~EdAekAIe~LNG~eLd---GR 81 (800)
....+||||.+||.++...+|..+|..|-.-..+.+. ..++ +-+|||+|.+ ...|..|+.+|||..|+ +.
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s--~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTS--HQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecc--hHHHHHHHHHhcCeeeccccCc
Confidence 3346899999999999999999999998666666554 2222 3699999997 99999999999999997 88
Q ss_pred EEEEEeccch
Q 003717 82 RLRLERAKEH 91 (800)
Q Consensus 82 ~LrVe~AKpr 91 (800)
.|+|++|+..
T Consensus 109 tLhiElAKSN 118 (284)
T KOG1457|consen 109 TLHIELAKSN 118 (284)
T ss_pred eeEeeehhcC
Confidence 9999998653
No 72
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=4.4e-07 Score=98.59 Aligned_cols=78 Identities=18% Similarity=0.452 Sum_probs=71.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc--CC--CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEe
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--KG--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLER 87 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd--TG--RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~ 87 (800)
+..-|||.-|.+-+++++|.-+|+.||.|.+|.||++ +| -.||||+|.+ .+++++|.-.|+...|+.++|.|++
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen--~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFEN--KESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecc--hhhHHHHHhhhcceeeccceEEeeh
Confidence 3567999999999999999999999999999999976 34 2699999998 9999999999999999999999999
Q ss_pred ccch
Q 003717 88 AKEH 91 (800)
Q Consensus 88 AKpr 91 (800)
++.-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8653
No 73
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.35 E-value=4.7e-07 Score=91.36 Aligned_cols=81 Identities=19% Similarity=0.392 Sum_probs=70.1
Q ss_pred hccCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEE-EEecc----CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEE
Q 003717 9 EVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAV-DIVRT----KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRL 83 (800)
Q Consensus 9 Ev~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksV-rVIRd----TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~L 83 (800)
......+||||||.+.+++..|.+.|+.||.+... .++++ .++|||||.|.+ .+.+.+|+..|||..+..++|
T Consensus 92 nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~s--feasd~ai~s~ngq~l~nr~i 169 (203)
T KOG0131|consen 92 NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYAS--FEASDAAIGSMNGQYLCNRPI 169 (203)
T ss_pred cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechh--HHHHHHHHHHhccchhcCCce
Confidence 34456899999999999999999999999997663 55543 347999999997 999999999999999999999
Q ss_pred EEEeccch
Q 003717 84 RLERAKEH 91 (800)
Q Consensus 84 rVe~AKpr 91 (800)
.|.+|..+
T Consensus 170 tv~ya~k~ 177 (203)
T KOG0131|consen 170 TVSYAFKK 177 (203)
T ss_pred EEEEEEec
Confidence 99999654
No 74
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=6.2e-07 Score=97.73 Aligned_cols=79 Identities=23% Similarity=0.471 Sum_probs=71.3
Q ss_pred hccCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc----CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEE
Q 003717 9 EVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT----KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLR 84 (800)
Q Consensus 9 Ev~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd----TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~Lr 84 (800)
|...-.+|||..+..+.+++||+..|+.||.|..|.+.+. ++|||||++|.+ ......||..||-..|+|+.|+
T Consensus 206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n--~qs~~eAiasMNlFDLGGQyLR 283 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN--LQSQSEAIASMNLFDLGGQYLR 283 (544)
T ss_pred HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEecc--ccchHHHhhhcchhhcccceEe
Confidence 3445679999999999999999999999999999999854 358999999998 9999999999999999999999
Q ss_pred EEecc
Q 003717 85 LERAK 89 (800)
Q Consensus 85 Ve~AK 89 (800)
|..+.
T Consensus 284 VGk~v 288 (544)
T KOG0124|consen 284 VGKCV 288 (544)
T ss_pred ccccc
Confidence 98763
No 75
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.27 E-value=9.6e-07 Score=95.22 Aligned_cols=77 Identities=26% Similarity=0.465 Sum_probs=66.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc----CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT----KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd----TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
.++||||+||..+++++|+++|.+||.|..+.++.+ ..||||||.|.. +++...+.....+.|.|+.+.|..|
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~---e~sVdkv~~~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDS---EDSVDKVTLQKFHDFNGKKVEVKRA 173 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecc---ccccceecccceeeecCceeeEeec
Confidence 458999999999999999999999999999888843 347999999996 5555555567889999999999999
Q ss_pred cchh
Q 003717 89 KEHY 92 (800)
Q Consensus 89 Kpr~ 92 (800)
.|+.
T Consensus 174 ~pk~ 177 (311)
T KOG4205|consen 174 IPKE 177 (311)
T ss_pred cchh
Confidence 9874
No 76
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.19 E-value=2e-06 Score=99.51 Aligned_cols=78 Identities=24% Similarity=0.489 Sum_probs=71.2
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEe--c-----cCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEE
Q 003717 11 EEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIV--R-----TKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRL 83 (800)
Q Consensus 11 ~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVI--R-----dTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~L 83 (800)
...++||||||++.+++..|...|+.||+|.+++++ + ++.+-||||.|-+ ..+|++|+..|+|..+.+..+
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmn--R~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMN--RADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehh--hhhHHHHHHHhcceeeeeeee
Confidence 457899999999999999999999999999999998 2 2346899999998 999999999999999999999
Q ss_pred EEEeccc
Q 003717 84 RLERAKE 90 (800)
Q Consensus 84 rVe~AKp 90 (800)
++.|+++
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999954
No 77
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.17 E-value=4.2e-06 Score=93.00 Aligned_cols=74 Identities=19% Similarity=0.317 Sum_probs=66.8
Q ss_pred cEEEEeCCCCCCCHHHHHHhhh-cCCceeEEEEecc---CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEecc
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFS-SLGEVKAVDIVRT---KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAK 89 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFS-qFG~VksVrVIRd---TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AK 89 (800)
+.+||.|+||++.+.+|+++|. +.|.|..|.++-+ +.||||.|+|.. ++.+++|++.||.+.+.||+|.|+...
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~--~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKD--PENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeC--HHHHHHHHHHhhhccccCceEEEeccC
Confidence 4599999999999999999996 5799999999843 458999999996 999999999999999999999998653
No 78
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.15 E-value=4.1e-06 Score=85.85 Aligned_cols=78 Identities=15% Similarity=0.278 Sum_probs=67.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcC-CceeEEEEecc--CC--CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEE
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSL-GEVKAVDIVRT--KG--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLE 86 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqF-G~VksVrVIRd--TG--RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe 86 (800)
...-+||+.+|..+.+.++..+|.+| |.|..+++-|. || +|||||+|++ .+.|.-|.+.||++.|.|+.|.|.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs--~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFES--EEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEecc--HHHHHHHHHHhhhhhhhhheeeeE
Confidence 34568999999999999999999999 66777777543 44 8999999998 999999999999999999999998
Q ss_pred eccch
Q 003717 87 RAKEH 91 (800)
Q Consensus 87 ~AKpr 91 (800)
+-.|.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87665
No 79
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.14 E-value=1.1e-05 Score=87.74 Aligned_cols=78 Identities=28% Similarity=0.438 Sum_probs=66.8
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHhhhcCCceeE--------EEEecc-CC--CcEEEEEecCCCHHHHHHHHHhcCCcEe
Q 003717 10 VEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKA--------VDIVRT-KG--RSFGYVDFFPSSHKSLSKLFSTYNGCVW 78 (800)
Q Consensus 10 v~qsrTLFVGNLP~nVTEEDLrelFSqFG~Vks--------VrVIRd-TG--RGFGFVEFeS~D~EdAekAIe~LNG~eL 78 (800)
....+.|||.|||.++|.+++.++|+.||.|.. |.+-++ .| +|=|.++|-. .+...-|+..|++..|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K--~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIK--RESVELAIKILDEDEL 208 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeec--ccHHHHHHHHhCcccc
Confidence 445678999999999999999999999998754 333333 23 6999999997 8999999999999999
Q ss_pred CCeEEEEEecc
Q 003717 79 KGGRLRLERAK 89 (800)
Q Consensus 79 dGR~LrVe~AK 89 (800)
.|+.|+|+.|+
T Consensus 209 rg~~~rVerAk 219 (382)
T KOG1548|consen 209 RGKKLRVERAK 219 (382)
T ss_pred cCcEEEEehhh
Confidence 99999999985
No 80
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.09 E-value=1.3e-05 Score=90.09 Aligned_cols=154 Identities=19% Similarity=0.230 Sum_probs=106.8
Q ss_pred hccCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCC--CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEE
Q 003717 9 EVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKG--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLE 86 (800)
Q Consensus 9 Ev~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTG--RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe 86 (800)
+.....-|=+.+|||++|+++|.++|+.++ |.++.+.+.++ .|=|||+|.+ .+++.+|++ .+...+..|-|.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~s--eedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTS--EEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeec--hHHHHHHHH-hhHHHhCCceEEEE
Confidence 444445677889999999999999999995 67766667656 4999999998 999999996 47788889999998
Q ss_pred eccchhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceee-eccC--CCCCcccc
Q 003717 87 RAKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKT-LPFC--GTGKHKYS 163 (800)
Q Consensus 87 ~AKpr~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKs-Vp~p--gTGK~KYG 163 (800)
.+.+..... ......+.+.. ....+-++.|++.+++ ++|..||..+--|.. +.++ ..|+
T Consensus 82 ~~~~~e~d~---------~~~~~g~~s~~----~d~vVRLRGLPfscte-~dI~~FFaGL~Iv~~gi~l~~d~rgR---- 143 (510)
T KOG4211|consen 82 TAGGAEADW---------VMRPGGPNSSA----NDGVVRLRGLPFSCTE-EDIVEFFAGLEIVPDGILLPMDQRGR---- 143 (510)
T ss_pred ccCCccccc---------cccCCCCCCCC----CCceEEecCCCccCcH-HHHHHHhcCCcccccceeeeccCCCC----
Confidence 886543211 11111222211 1123455668999977 999999998765543 2222 2222
Q ss_pred cccccCCCCCcccccccchhhhhhhhcc
Q 003717 164 FQRVEAPPLPKYFCDCEEHSAAFHAAEG 191 (800)
Q Consensus 164 F~~ve~Ps~pV~F~sfEea~aA~eAmNG 191 (800)
+-.-+||.|+..+.|..||.+
T Consensus 144 -------~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 144 -------PTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred -------cccceEEEecCHHHHHHHHHH
Confidence 223578888888888888773
No 81
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.01 E-value=8.7e-06 Score=90.61 Aligned_cols=77 Identities=23% Similarity=0.351 Sum_probs=67.2
Q ss_pred hccCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 9 EVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 9 Ev~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
-.++.++|||.|||++.|+..|++-|..||.|..+.|+. .++.-|.|.|.+ +++|+.|+..|||..|+||.|.|.++
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime-~GkskGVVrF~s--~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME-NGKSKGVVRFFS--PEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc-cCCccceEEecC--HHHHHHHHHHhccCcccCceeeeeeC
Confidence 345667899999999999999999999999999999862 243344899998 99999999999999999999999763
No 82
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.97 E-value=1.7e-05 Score=83.27 Aligned_cols=77 Identities=26% Similarity=0.415 Sum_probs=67.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc-CC--CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEecc
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT-KG--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAK 89 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd-TG--RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AK 89 (800)
..+|+|.||++.|+++||+++|..||.+..+.|..+ .| .|.|-|.|.. .++|.+|+..|||..++|++|.+....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r--~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNR--RDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecc--hHhHHHHHHHhcCcccCCceeeeEEec
Confidence 368999999999999999999999998888877743 34 4999999997 889999999999999999999998765
Q ss_pred ch
Q 003717 90 EH 91 (800)
Q Consensus 90 pr 91 (800)
+.
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 43
No 83
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.95 E-value=5.2e-06 Score=94.25 Aligned_cols=178 Identities=16% Similarity=0.233 Sum_probs=115.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc----CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEe
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT----KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLER 87 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd----TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~ 87 (800)
...++|||+||...++..+.++...||.+....++.+ .++||||.+|.. ......|+..|||..++++.|.|..
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~d--psvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCD--PSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeC--CcchhhhhcccchhhhcCceeEeeh
Confidence 4568999999999999999999999999999888843 348999999996 8999999999999999999999998
Q ss_pred ccchhhHHHhhhHHHHhhhhCCCCCC----CCCCC---CCCCcccCCCCCCCC-Ccc--hhhcccccCccceeeeccC--
Q 003717 88 AKEHYLARLKREWAEDDAQLVNPPVT----DSVAP---DNKDATRLDTPKKLL-DKD--KKLNIFFPRLRKVKTLPFC-- 155 (800)
Q Consensus 88 AKpr~~~RlkrEraq~rak~~~sp~s----D~Vd~---~~~kl~is~~Lkksv-des--d~LreyFskyGKVKsVp~p-- 155 (800)
|-+.......... -.+.+....+.. .+... -..++.-...|+.+- .++ ++++.-+++||.|.+|..+
T Consensus 366 A~~g~~~~~~~~~-~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 366 AIVGASNANVNFN-ISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred hhccchhccccCC-ccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 8553211110000 000000000000 00000 001111111122111 011 6788889999998876443
Q ss_pred -CCCCcccccccccCCCCCcccccccchhhhhhhhccCccccC
Q 003717 156 -GTGKHKYSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHP 197 (800)
Q Consensus 156 -gTGK~KYGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~ 197 (800)
..+...+| +.--+|.|.+.++.+.|.++|+|--+.+.
T Consensus 445 ~~~~~~~~G-----~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 445 YPDENPVPG-----TGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred CCCCCcCCC-----cccEEEEecChHHHHHHHHHccCceeCCc
Confidence 22222222 23446899999999999999999887664
No 84
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.91 E-value=1.9e-05 Score=88.41 Aligned_cols=77 Identities=23% Similarity=0.390 Sum_probs=65.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc----CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT----KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd----TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
..+|||+|||.+++..+|+++|..||.|+...|... +..+||||+|.+ .+++..||.+- -..|+|++|.|+.-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~--~~~~~~~i~As-p~~ig~~kl~Veek 364 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFEN--AAAVQNAIEAS-PLEIGGRKLNVEEK 364 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEee--cchhhhhhhcC-ccccCCeeEEEEec
Confidence 456999999999999999999999999999888732 223899999997 88888888764 88899999999976
Q ss_pred cchh
Q 003717 89 KEHY 92 (800)
Q Consensus 89 Kpr~ 92 (800)
++.+
T Consensus 365 ~~~~ 368 (419)
T KOG0116|consen 365 RPGF 368 (419)
T ss_pred cccc
Confidence 6543
No 85
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.83 E-value=7.9e-05 Score=82.70 Aligned_cols=160 Identities=21% Similarity=0.225 Sum_probs=103.2
Q ss_pred CcEEEEeCCC-CCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccch
Q 003717 13 QTRIYVGGLG-EKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEH 91 (800)
Q Consensus 13 srTLFVGNLP-~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKpr 91 (800)
...|.|.||. +.+|.+-|..+|+-||.|.+|.|+..++ --|.|.|.+ ...|+-|+..|+|+.|.|++|+|.+++..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd--~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSD--GQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-cceeeeecc--hhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 4678899986 5699999999999999999999986544 579999995 99999999999999999999999998754
Q ss_pred hhHHHhhhHHHHhhhhCCCCCCCCCCCC--------CCCccc------CCCCCCCCCcchhhcccccCccc-eeeeccCC
Q 003717 92 YLARLKREWAEDDAQLVNPPVTDSVAPD--------NKDATR------LDTPKKLLDKDKKLNIFFPRLRK-VKTLPFCG 156 (800)
Q Consensus 92 ~~~RlkrEraq~rak~~~sp~sD~Vd~~--------~~kl~i------s~~Lkksvdesd~LreyFskyGK-VKsVp~pg 156 (800)
... ++++.+.++.- ..+.....-+. ..+.++ .-.++.++.+ ++++..|.+-|- |+.. +.
T Consensus 374 ~vq-lp~egq~d~gl--T~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svse-e~lk~~f~~~g~~vkaf--kf 447 (492)
T KOG1190|consen 374 NVQ-LPREGQEDQGL--TKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSE-EDLKNLFQEPGGQVKAF--KF 447 (492)
T ss_pred ccc-CCCCCCccccc--cccCCCCchhhccCcccccccccCCchhheeeccCCcccch-hHHHHhhhcCCceEEee--ee
Confidence 322 22221111110 00000000000 001111 1123555655 788888887766 3432 22
Q ss_pred CCC-cccccccccCCCCCcccccccchhhhhhhhc
Q 003717 157 TGK-HKYSFQRVEAPPLPKYFCDCEEHSAAFHAAE 190 (800)
Q Consensus 157 TGK-~KYGF~~ve~Ps~pV~F~sfEea~aA~eAmN 190 (800)
-++ +||+. .++.++|++..|+..|.
T Consensus 448 f~kd~kmal---------~q~~sveeA~~ali~~h 473 (492)
T KOG1190|consen 448 FQKDRKMAL---------PQLESVEEAIQALIDLH 473 (492)
T ss_pred cCCCcceee---------cccCChhHhhhhccccc
Confidence 222 23433 78889999888887754
No 86
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.75 E-value=3.2e-05 Score=81.63 Aligned_cols=78 Identities=26% Similarity=0.532 Sum_probs=69.0
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc--CC--CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEE
Q 003717 11 EEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--KG--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLE 86 (800)
Q Consensus 11 ~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd--TG--RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe 86 (800)
....+||.|.|..+++++.|-+.|.+|-.....+++++ ++ +|||||.|.+ ..++..|+.+|||..++.|+|++.
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~--pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRD--PADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecC--HHHHHHHHHhhcccccccchhHhh
Confidence 34579999999999999999999999988888888865 33 6999999996 999999999999999999999887
Q ss_pred eccc
Q 003717 87 RAKE 90 (800)
Q Consensus 87 ~AKp 90 (800)
....
T Consensus 266 kS~w 269 (290)
T KOG0226|consen 266 KSEW 269 (290)
T ss_pred hhhH
Confidence 6543
No 87
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.66 E-value=1.8e-05 Score=82.24 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=64.6
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEec--cCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR--TKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIR--dTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
++|||+|+...++++-|.++|-+.|+|..|.|.. +...-||||.|.. +-...-|+..|||..+.++.|.|.+-
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~--E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPN--ENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeeccc--ccchhhhhhhcccchhccchhhcccc
Confidence 7999999999999999999999999999988773 3223499999996 88999999999999999999888753
No 88
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=3e-05 Score=88.30 Aligned_cols=70 Identities=21% Similarity=0.436 Sum_probs=63.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEE
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLR 84 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~Lr 84 (800)
..++|+|-|||..|++++|+.+|+.||+|+.++.-+ ..+|..||+|.+ ..+|+.|+++||+.++.|+.|.
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyD--vR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYD--VRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEee--hHhHHHHHHHHHHHHhhhhhhc
Confidence 467999999999999999999999999999965422 247999999995 9999999999999999999988
No 89
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.60 E-value=0.0001 Score=76.80 Aligned_cols=76 Identities=18% Similarity=0.394 Sum_probs=67.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc--C--CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEe
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--K--GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLER 87 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd--T--GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~ 87 (800)
..+.+||||+.+.+|.+++...|+.||.|..+.|..+ . .+||+||+|.. .+.+..|+. |||..|.|+.+.|.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~--~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSS--YELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEeccc--HhhhHHHhh-cCCcccccccceeee
Confidence 3578999999999999999999999999998888733 3 48999999997 999999998 999999999999987
Q ss_pred ccc
Q 003717 88 AKE 90 (800)
Q Consensus 88 AKp 90 (800)
.+-
T Consensus 177 ~r~ 179 (231)
T KOG4209|consen 177 KRT 179 (231)
T ss_pred eee
Confidence 643
No 90
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.56 E-value=9.7e-05 Score=82.02 Aligned_cols=176 Identities=18% Similarity=0.240 Sum_probs=110.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCC--cEeCCeEEEEEecc
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNG--CVWKGGRLRLERAK 89 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG--~eLdGR~LrVe~AK 89 (800)
..+-|.++|||+++++++|-.++.+||.|..+.+++ |+..||++|.+ .+.|..-+..+.. -.+.|++|.|.++.
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk--GknQAflem~d--~~sAvtmv~~y~~~~p~lr~~~~yiq~sn 102 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK--GKNQAFLEMAD--EESAVTMVNYYTSVTPVLRGQPIYIQYSN 102 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeec--cchhhhhhhcc--hhhhhheeecccccCccccCcceeehhhh
Confidence 457899999999999999999999999999988876 55589999996 7777664433333 25689999999875
Q ss_pred chhhHHH---hhhHHHH--hhh----hCCCCCC---CCCCCCCCCcccCCC----CCCCCCcchhhcccccCccce-eee
Q 003717 90 EHYLARL---KREWAED--DAQ----LVNPPVT---DSVAPDNKDATRLDT----PKKLLDKDKKLNIFFPRLRKV-KTL 152 (800)
Q Consensus 90 pr~~~Rl---krEraq~--rak----~~~sp~s---D~Vd~~~~kl~is~~----Lkksvdesd~LreyFskyGKV-KsV 152 (800)
-++.... .+.|.+. .+. ....+.+ +.+-....+..+... +-..++- +-|..+|++||.| |++
T Consensus 103 ~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVsl-DVLHqvFS~fG~VlKIi 181 (492)
T KOG1190|consen 103 HSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSL-DVLHQVFSKFGFVLKII 181 (492)
T ss_pred HHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEH-HHHHHHHhhcceeEEEE
Confidence 5433211 0111111 000 0000101 110000001111111 1111211 7788999999996 677
Q ss_pred ccCCCCCcccccccccCCCCCcccccccchhhhhhhhccCccccCCCCccccc
Q 003717 153 PFCGTGKHKYSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHPAAGQEEIH 205 (800)
Q Consensus 153 p~pgTGK~KYGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n~~q~~i~ 205 (800)
+|.-. =||. .-++|.+.+.+..|--++.|+.|-+ +.|-.+
T Consensus 182 TF~Kn----n~FQ------ALvQy~d~~sAq~AK~aLdGqnIyn---gcCtLr 221 (492)
T KOG1190|consen 182 TFTKN----NGFQ------ALVQYTDAVSAQAAKLALDGQNIYN---GCCTLR 221 (492)
T ss_pred EEecc----cchh------hhhhccchhhHHHHHHhccCCcccC---ceeEEE
Confidence 66421 2553 5689999999999999999999877 455444
No 91
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.00 E-value=0.0013 Score=71.98 Aligned_cols=80 Identities=20% Similarity=0.453 Sum_probs=66.2
Q ss_pred CcEEEEeCCCCCCCHHH----H--HHhhhcCCceeEEEEeccCC-----CcEE--EEEecCCCHHHHHHHHHhcCCcEeC
Q 003717 13 QTRIYVGGLGEKVTDDD----L--AKVFSSLGEVKAVDIVRTKG-----RSFG--YVDFFPSSHKSLSKLFSTYNGCVWK 79 (800)
Q Consensus 13 srTLFVGNLP~nVTEED----L--relFSqFG~VksVrVIRdTG-----RGFG--FVEFeS~D~EdAekAIe~LNG~eLd 79 (800)
..-+||-+|+..+..++ | .++|++||.|..+.|-+.+. .+.+ ||+|.+ .++|.+||.+.+|..++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~--kedAarcIa~vDgs~~D 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYST--KEDAARCIAEVDGSLLD 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecc--hHHHHHHHHHhcccccc
Confidence 44689999999988876 3 48999999999988765431 2433 999998 99999999999999999
Q ss_pred CeEEEEEeccchhhH
Q 003717 80 GGRLRLERAKEHYLA 94 (800)
Q Consensus 80 GR~LrVe~AKpr~~~ 94 (800)
||.|+..+..-+|-.
T Consensus 192 Gr~lkatYGTTKYCt 206 (480)
T COG5175 192 GRVLKATYGTTKYCT 206 (480)
T ss_pred CceEeeecCchHHHH
Confidence 999999998777543
No 92
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.94 E-value=0.00081 Score=70.46 Aligned_cols=67 Identities=16% Similarity=0.358 Sum_probs=56.7
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeC
Q 003717 11 EEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWK 79 (800)
Q Consensus 11 ~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLd 79 (800)
+.-.+|||.||..++++++|+.+|+.|-.....+|....|-..+||+|.. .+.|..||..|.|..|-
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~--~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEE--IEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHH--HHHHHHHHHHhhcceec
Confidence 34468999999999999999999999987766666544456799999996 99999999999988763
No 93
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.92 E-value=0.001 Score=75.84 Aligned_cols=168 Identities=17% Similarity=0.259 Sum_probs=96.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc---C----CCc---EEEEEecCCCHHHHHHHHHhcCCcEeCCe
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT---K----GRS---FGYVDFFPSSHKSLSKLFSTYNGCVWKGG 81 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd---T----GRG---FGFVEFeS~D~EdAekAIe~LNG~eLdGR 81 (800)
-.++||||+||+.++++.|...|..||.+. |.+.+. . .+| |.|+.|+. +......+ +.+.....
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~--E~sV~~Ll---~aC~~~~~ 331 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFED--ERSVQSLL---SACSEGEG 331 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecc--hHHHHHHH---HHHhhccc
Confidence 357999999999999999999999999963 455521 1 246 99999995 44433333 44555666
Q ss_pred EEEEEeccchhhHHHh--hhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhccccc-CccceeeeccCCCC
Q 003717 82 RLRLERAKEHYLARLK--REWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFP-RLRKVKTLPFCGTG 158 (800)
Q Consensus 82 ~LrVe~AKpr~~~Rlk--rEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFs-kyGKVKsVp~pgTG 158 (800)
.+.+....++...+.- +.|.-.... .-.-..-.+++. ...|+++ +...+.. ..|..+|. -||-|--+-+....
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~-fv~d~sq~lDpr-rTVFVGg-vprpl~A-~eLA~imd~lyGgV~yaGIDtD~ 407 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSD-FVLDHNQPIDPR-RTVFVGG-LPRPLTA-EELAMIMEDLFGGVLYVGIDTDP 407 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccch-hhhccCcccCcc-ceEEecC-CCCcchH-HHHHHHHHHhcCceEEEEeccCc
Confidence 7777666555433210 011000000 000011123332 2344444 5555656 77888888 68888766555444
Q ss_pred CcccccccccCCCCCcccccccchhhhhhhhccCccccC
Q 003717 159 KHKYSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHP 197 (800)
Q Consensus 159 K~KYGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~ 197 (800)
+.||== ..+=|+|.....--+|+.+ .++...
T Consensus 408 k~KYPk-----GaGRVtFsnqqsYi~AIsa---rFvql~ 438 (520)
T KOG0129|consen 408 KLKYPK-----GAGRVTFSNQQAYIKAISA---RFVQLD 438 (520)
T ss_pred ccCCCC-----CcceeeecccHHHHHHHhh---heEEEe
Confidence 666411 1344566665555555555 666554
No 94
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.70 E-value=0.0079 Score=55.67 Aligned_cols=75 Identities=15% Similarity=0.329 Sum_probs=60.4
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcC--CceeEEEEecc----CCCcEEEEEecCCCHHHHHHHHHhcCCcEeC----CeEE
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSL--GEVKAVDIVRT----KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWK----GGRL 83 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqF--G~VksVrVIRd----TGRGFGFVEFeS~D~EdAekAIe~LNG~eLd----GR~L 83 (800)
+||-|.|+|...|.++|.+++... |...-+.++-| .+.|||||.|.+ .+.|.+-...++|..|. .+.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~--~~~~~~F~~~f~g~~w~~~~s~Kvc 79 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTS--PQAAIRFYKAFNGKKWPNFNSKKVC 79 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCC--HHHHHHHHHHHcCCccccCCCCcEE
Confidence 689999999999999999888653 44444455422 347999999997 99999999999999996 5677
Q ss_pred EEEeccc
Q 003717 84 RLERAKE 90 (800)
Q Consensus 84 rVe~AKp 90 (800)
.|.+|+-
T Consensus 80 ~i~yAri 86 (97)
T PF04059_consen 80 EISYARI 86 (97)
T ss_pred EEehhHh
Confidence 8888854
No 95
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.67 E-value=0.001 Score=71.39 Aligned_cols=77 Identities=32% Similarity=0.484 Sum_probs=66.1
Q ss_pred CCcEEE-EeCCCCCCCHHHHHHhhhcCCceeEEEEecc--CC--CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEE
Q 003717 12 EQTRIY-VGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--KG--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLE 86 (800)
Q Consensus 12 qsrTLF-VGNLP~nVTEEDLrelFSqFG~VksVrVIRd--TG--RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe 86 (800)
...++| |++|++.++.++|+.+|..+|.|..+++... ++ +|||||.|.. ...+..++.. +...+.|+++.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSA--GNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhh--chhHHHHhhc-ccCcccCcccccc
Confidence 345666 9999999999999999999999999998833 33 6999999997 7888888777 8899999999999
Q ss_pred eccch
Q 003717 87 RAKEH 91 (800)
Q Consensus 87 ~AKpr 91 (800)
+..++
T Consensus 260 ~~~~~ 264 (285)
T KOG4210|consen 260 EDEPR 264 (285)
T ss_pred cCCCC
Confidence 88776
No 96
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.57 E-value=0.0024 Score=68.54 Aligned_cols=152 Identities=14% Similarity=0.136 Sum_probs=100.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc----CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEe
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT----KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLER 87 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd----TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~ 87 (800)
...++|+|++.+.+.+.+...+|..+|.+..+.+... ..+||+++.|.. .+.+..|+.....+.+.++.+....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~--ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAG--KSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeecccc--HHHHHHHHHhhhccccccccccCcc
Confidence 4678999999999999999999999999888877632 347999999998 8999988877666788888887776
Q ss_pred ccchhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceeeeccC---CCCCccccc
Q 003717 88 AKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPFC---GTGKHKYSF 164 (800)
Q Consensus 88 AKpr~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKsVp~p---gTGK~KYGF 164 (800)
...+... .+. ... .. .. .. ...++....+...++. +.|+.+|..++.|..++.+ .+|..+ ||
T Consensus 165 ~~~~~~~-~~n--~~~-~~-~~-------~~-s~~~~~~~~~~f~~~~-d~~~~~~~~~~~i~~~r~~~~~~s~~~k-g~ 229 (285)
T KOG4210|consen 165 NTRRGLR-PKN--KLS-RL-SS-------GP-SDTIFFVGELDFSLTR-DDLKEHFVSSGEITSVRLPTDEESGDSK-GF 229 (285)
T ss_pred ccccccc-ccc--hhc-cc-cc-------Cc-cccceeecccccccch-HHHhhhccCcCcceeeccCCCCCccchh-hh
Confidence 6544210 000 000 00 00 00 0111222223455544 8888999999998877665 688887 55
Q ss_pred ccccCCCCCcccccccchhhhhh
Q 003717 165 QRVEAPPLPKYFCDCEEHSAAFH 187 (800)
Q Consensus 165 ~~ve~Ps~pV~F~sfEea~aA~e 187 (800)
. |+.|..-.....++.
T Consensus 230 a-------~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 230 A-------YVDFSAGNSKKLALN 245 (285)
T ss_pred h-------hhhhhhchhHHHHhh
Confidence 2 344544444444444
No 97
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=96.57 E-value=0.0013 Score=63.59 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=57.6
Q ss_pred CcccCCCCCCCCCcchhhcccccCccceee---eccCCCCCcc-cccccccCCCCCcccccccchhhhhhhhccCccccC
Q 003717 122 DATRLDTPKKLLDKDKKLNIFFPRLRKVKT---LPFCGTGKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHP 197 (800)
Q Consensus 122 kl~is~~Lkksvdesd~LreyFskyGKVKs---Vp~pgTGK~K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~ 197 (800)
.+++. .|...+++ ++|+.+|.+||.|.. +.++.+|+++ |+| |.|.+.+++..|++.|||..+
T Consensus 36 ~lfVg-nL~~~~te-~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaF---------V~F~~~e~A~~Al~~lng~~i--- 101 (144)
T PLN03134 36 KLFIG-GLSWGTDD-ASLRDAFAHFGDVVDAKVIVDRETGRSRGFGF---------VNFNDEGAATAAISEMDGKEL--- 101 (144)
T ss_pred EEEEe-CCCCCCCH-HHHHHHHhcCCCeEEEEEEecCCCCCcceEEE---------EEECCHHHHHHHHHHcCCCEE---
Confidence 45554 46777766 999999999999764 5556899988 777 899999999999999998765
Q ss_pred CCCccccchhhhc
Q 003717 198 AAGQEEIHDMEEL 210 (800)
Q Consensus 198 n~~q~~i~~~ee~ 210 (800)
++..+.|..+.++
T Consensus 102 ~Gr~l~V~~a~~~ 114 (144)
T PLN03134 102 NGRHIRVNPANDR 114 (144)
T ss_pred CCEEEEEEeCCcC
Confidence 3456666654443
No 98
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.40 E-value=0.0094 Score=62.30 Aligned_cols=77 Identities=12% Similarity=0.296 Sum_probs=66.5
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeC-CeEEEEEec
Q 003717 10 VEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWK-GGRLRLERA 88 (800)
Q Consensus 10 v~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLd-GR~LrVe~A 88 (800)
..+...||+-|||..++.+.|..+|.+|.....++++.. -.|.|||+|.+ ...|..|...+.|..|- ...+.|.+|
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~-~~~iAfve~~~--d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP-RSGIAFVEFLS--DRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC-CCceeEEecch--hhhhHHHhhhhccceeccCceEEeccc
Confidence 345678999999999999999999999999999988752 35899999997 67789999999999886 788888876
Q ss_pred c
Q 003717 89 K 89 (800)
Q Consensus 89 K 89 (800)
+
T Consensus 220 ~ 220 (221)
T KOG4206|consen 220 K 220 (221)
T ss_pred C
Confidence 4
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.21 E-value=0.0084 Score=55.67 Aligned_cols=70 Identities=33% Similarity=0.510 Sum_probs=43.2
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCC-----cEeCCeEEEEEe
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNG-----CVWKGGRLRLER 87 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG-----~eLdGR~LrVe~ 87 (800)
.-|+|.+++..++.++|+..|.+||.|..|.+.+ |..-|||-|.+ .+.|..|+..+.- ..+.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~--~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKT--PEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS-----HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECC--cchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 3578889999999999999999999999988754 55689999997 7788888876543 355666665554
No 100
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.21 E-value=0.012 Score=54.02 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=48.2
Q ss_pred cEEEEeCCCCCCCHHH----HHHhhhcCCc-eeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 14 TRIYVGGLGEKVTDDD----LAKVFSSLGE-VKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 14 rTLFVGNLP~nVTEED----LrelFSqFG~-VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
.-|||.|||.+.+... |++++..+|. |..| ..|-|+|.|.+ .+.|.+|...|+|..+-|++|.|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~--~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPN--QEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESS--HHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCC--HHHHHHHHHhhcccccccceEEEEEc
Confidence 4699999999998765 5677777865 6554 34789999998 99999999999999999999999987
Q ss_pred c
Q 003717 89 K 89 (800)
Q Consensus 89 K 89 (800)
.
T Consensus 75 ~ 75 (90)
T PF11608_consen 75 P 75 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 101
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=96.20 E-value=0.0015 Score=69.39 Aligned_cols=155 Identities=22% Similarity=0.223 Sum_probs=99.7
Q ss_pred CcEEEEeCCCCCCCHHH-H--HHhhhcCCceeEEEEeccC---CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEE
Q 003717 13 QTRIYVGGLGEKVTDDD-L--AKVFSSLGEVKAVDIVRTK---GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLE 86 (800)
Q Consensus 13 srTLFVGNLP~nVTEED-L--relFSqFG~VksVrVIRdT---GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe 86 (800)
...+|++++-..+..+- | ...|+.|-.+....++++. -++++|+.|.. .....++-..-+++.++-+++++.
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~--s~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKA--SDALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcch--hhhhhhhccccccccccCcceeec
Confidence 34678888877776665 3 6778877766666666442 36999999984 555555555556666666666555
Q ss_pred eccchhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccc---eeeeccCCCCCcc-c
Q 003717 87 RAKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRK---VKTLPFCGTGKHK-Y 162 (800)
Q Consensus 87 ~AKpr~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGK---VKsVp~pgTGK~K-Y 162 (800)
.+..-...-+ .+| +..|. .++-++ |--++.. +.|.-.|.+|.. .++++++-|||.| |
T Consensus 174 ~gtswedPsl-~ew-------------~~~Df---RIfcgd-lgNevnd-~vl~raf~Kfpsf~~akviRdkRTgKSkgy 234 (290)
T KOG0226|consen 174 AGTSWEDPSL-AEW-------------DEDDF---RIFCGD-LGNEVND-DVLARAFKKFPSFQKAKVIRDKRTGKSKGY 234 (290)
T ss_pred cccccCCccc-ccC-------------ccccc---eeeccc-ccccccH-HHHHHHHHhccchhhccccccccccccccc
Confidence 4432211100 011 11111 122221 2333434 666666666654 6789999999998 9
Q ss_pred ccccccCCCCCcccccccchhhhhhhhccCccccC
Q 003717 163 SFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHP 197 (800)
Q Consensus 163 GF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~ 197 (800)
|| |.|.+..+...|+..|+|.|.-+.
T Consensus 235 gf---------VSf~~pad~~rAmrem~gkyVgsr 260 (290)
T KOG0226|consen 235 GF---------VSFRDPADYVRAMREMNGKYVGSR 260 (290)
T ss_pred ee---------eeecCHHHHHHHHHhhcccccccc
Confidence 88 899999999999999999998764
No 102
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.07 E-value=0.004 Score=64.89 Aligned_cols=70 Identities=29% Similarity=0.490 Sum_probs=62.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
..+|+|-+++..+.+.+|.+.|+++|.+....+ .++|+||.|.. .++|..|+..++|..+.|+.|.+..+
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~--~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSE--QEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhh----hccccceeehh--hhhhhhcchhccchhhcCceeeeccc
Confidence 568999999999999999999999999855433 56899999998 99999999999999999999999443
No 103
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=96.01 E-value=0.0021 Score=67.59 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=50.6
Q ss_pred CCCCCCcccCCCCCCCCCcchhhcccccCccce---eeeccCCCCCcc-cccccccCCCCCcccccccchhhhhhhhc
Q 003717 117 APDNKDATRLDTPKKLLDKDKKLNIFFPRLRKV---KTLPFCGTGKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAE 190 (800)
Q Consensus 117 d~~~~kl~is~~Lkksvdesd~LreyFskyGKV---KsVp~pgTGK~K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmN 190 (800)
|...+++++++ |.+.... +.|+.||.+||.| .+|.++.|||+| ||| |.|+|.|.+..|..-.|
T Consensus 9 DT~~TKifVgg-L~w~T~~-~~l~~yFeqfGeI~eavvitd~~t~rskGyGf---------VTf~d~~aa~rAc~dp~ 75 (247)
T KOG0149|consen 9 DTTFTKIFVGG-LAWETHK-ETLRRYFEQFGEIVEAVVITDKNTGRSKGYGF---------VTFRDAEAATRACKDPN 75 (247)
T ss_pred CceEEEEEEcC-cccccch-HHHHHHHHHhCceEEEEEEeccCCccccceee---------EEeecHHHHHHHhcCCC
Confidence 34456677765 6777756 8999999999996 468999999998 999 89999888888876554
No 104
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.97 E-value=0.037 Score=61.76 Aligned_cols=172 Identities=15% Similarity=0.202 Sum_probs=107.7
Q ss_pred CCcEEEEeCCCCC-CCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccc
Q 003717 12 EQTRIYVGGLGEK-VTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKE 90 (800)
Q Consensus 12 qsrTLFVGNLP~n-VTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKp 90 (800)
+..-+.|-+|... +.-+.|..+|..||.|..|.+|+ +..|-|.|++.+ ..+.++|+..||+..+-|.+|.|..++.
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk-Tk~gtamVemgd--~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK-TKPGTAMVEMGD--AYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee-cccceeEEEcCc--HHHHHHHHHHhccCccccceEEEeeccc
Confidence 3566888999876 45577999999999999999986 245889999996 9999999999999999999999998875
Q ss_pred hhhHHHh-----------hhHHHHhhhhCCCCCCCCCCCCCCCcccCCCC-----CCCCCcchhhcccccCccc----ee
Q 003717 91 HYLARLK-----------REWAEDDAQLVNPPVTDSVAPDNKDATRLDTP-----KKLLDKDKKLNIFFPRLRK----VK 150 (800)
Q Consensus 91 r~~~Rlk-----------rEraq~rak~~~sp~sD~Vd~~~~kl~is~~L-----kksvdesd~LreyFskyGK----VK 150 (800)
....... .+....+.....+|... ..+--.+++..| +..+++ +.|-.+|..... |+
T Consensus 363 ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qA---sKNrIq~Ps~vLHffNaP~~vtE-e~l~~i~nek~v~~~svk 438 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQA---SKNRIQPPSNVLHFFNAPLGVTE-EQLIGICNEKDVPPTSVK 438 (494)
T ss_pred cccccCCceecCCCCcchhhcccccccccCChhHh---hcccccCCcceeEEecCCCccCH-HHHHHHhhhcCCCcceEE
Confidence 4332110 00000000001110000 000001111111 334544 666666655433 44
Q ss_pred eeccCCCCCcccccccccCCCCCcccccccchhhhhhhhccCccccCCCC
Q 003717 151 TLPFCGTGKHKYSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHPAAG 200 (800)
Q Consensus 151 sVp~pgTGK~KYGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n~~ 200 (800)
+.+.+ +.+.- ++-..|...+++-.|+..+|--.+.+++|+
T Consensus 439 vFp~k-serSs---------sGllEfe~~s~Aveal~~~NH~pi~~p~gs 478 (494)
T KOG1456|consen 439 VFPLK-SERSS---------SGLLEFENKSDAVEALMKLNHYPIEGPNGS 478 (494)
T ss_pred eeccc-ccccc---------cceeeeehHHHHHHHHHHhccccccCCCCC
Confidence 44443 22332 445788888899999988887777777655
No 105
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.77 E-value=0.0045 Score=74.31 Aligned_cols=148 Identities=17% Similarity=0.255 Sum_probs=104.2
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc---CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEE
Q 003717 10 VEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT---KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLE 86 (800)
Q Consensus 10 v~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd---TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe 86 (800)
...+++||+|||+..+++.+|+..|..||.|..|.|-+. ++--||||.|.+ ...+-.|...+.|..|....+++.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n--~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLN--TDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhc--cccCcccchhhcCCccccCccccc
Confidence 345789999999999999999999999999999988632 234699999998 788888888888887766566655
Q ss_pred eccchhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceeeeccCCCCCccccccc
Q 003717 87 RAKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPFCGTGKHKYSFQR 166 (800)
Q Consensus 87 ~AKpr~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKsVp~pgTGK~KYGF~~ 166 (800)
+..+... ..+.+.+++ |..-. +-..|.-.|..||.|..|-.. |.
T Consensus 447 lG~~kst-------------------------~ttr~~sgg-lg~w~-p~~~l~r~fd~fGpir~Idy~----hg----- 490 (975)
T KOG0112|consen 447 LGQPKST-------------------------PTTRLQSGG-LGPWS-PVSRLNREFDRFGPIRIIDYR----HG----- 490 (975)
T ss_pred ccccccc-------------------------cceeeccCC-CCCCC-hHHHHHHHhhccCcceeeecc----cC-----
Confidence 5433100 001111211 11112 226788889999999887332 21
Q ss_pred ccCCCCCcccccccchhhhhhhhccCccccC
Q 003717 167 VEAPPLPKYFCDCEEHSAAFHAAEGKQIHHP 197 (800)
Q Consensus 167 ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~ 197 (800)
-|=.|+.+-+...+.+|.+.|.|..+--+
T Consensus 491 --q~yayi~yes~~~aq~a~~~~rgap~G~P 519 (975)
T KOG0112|consen 491 --QPYAYIQYESPPAAQAATHDMRGAPLGGP 519 (975)
T ss_pred --CcceeeecccCccchhhHHHHhcCcCCCC
Confidence 01136888889999999999998888665
No 106
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.38 E-value=0.042 Score=60.74 Aligned_cols=77 Identities=14% Similarity=0.200 Sum_probs=62.0
Q ss_pred ccCCcEEEEeCCC----CCCC-------HHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEe
Q 003717 10 VEEQTRIYVGGLG----EKVT-------DDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVW 78 (800)
Q Consensus 10 v~qsrTLFVGNLP----~nVT-------EEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eL 78 (800)
.+..++|.+.|+= +..+ .++|++...+||.|..|.|.-....|.+-|.|.+ .++|..||..|+|..|
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n--~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRN--NEEADQCIQTMDGRWF 339 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCC--hHHHHHHHHHhcCeee
Confidence 3456788888872 2333 3567777899999999987654567999999997 9999999999999999
Q ss_pred CCeEEEEEec
Q 003717 79 KGGRLRLERA 88 (800)
Q Consensus 79 dGR~LrVe~A 88 (800)
+||.|....-
T Consensus 340 dgRql~A~i~ 349 (382)
T KOG1548|consen 340 DGRQLTASIW 349 (382)
T ss_pred cceEEEEEEe
Confidence 9999987654
No 107
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=95.29 E-value=0.0071 Score=48.65 Aligned_cols=58 Identities=26% Similarity=0.451 Sum_probs=45.9
Q ss_pred CCCCCCcchhhcccccCccceeeeccC--CCCCcc-cccccccCCCCCcccccccchhhhhhhhccCcccc
Q 003717 129 PKKLLDKDKKLNIFFPRLRKVKTLPFC--GTGKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHH 196 (800)
Q Consensus 129 Lkksvdesd~LreyFskyGKVKsVp~p--gTGK~K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n 196 (800)
|+..+++ ++|+.+|+.||.|..+... .+|+.+ ||| |.|.+.+++..|++.++|..+..
T Consensus 6 lp~~~t~-~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~---------V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 6 LPPDVTE-EELRDFFSQFGKIESIKVMRNSSGKSKGYAF---------VEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp ETTTSSH-HHHHHHHHTTSTEEEEEEEEETTSSEEEEEE---------EEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCcCCH-HHHHHHHHHhhhcccccccccccccccceEE---------EEEcCHHHHHHHHHHcCCCEECc
Confidence 4566656 8999999999998655443 456654 888 89999999999999999976644
No 108
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.28 E-value=0.017 Score=69.70 Aligned_cols=80 Identities=23% Similarity=0.414 Sum_probs=70.1
Q ss_pred hccCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCC--eEEEEE
Q 003717 9 EVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKG--GRLRLE 86 (800)
Q Consensus 9 Ev~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdG--R~LrVe 86 (800)
.....+++|||+|..++.-..|...|..||.|..+.+ +.+..|+||.|++ ...+..|+..|-|..|+| ++|+|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy--~hgq~yayi~yes--~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY--RHGQPYAYIQYES--PPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec--ccCCcceeeeccc--CccchhhHHHHhcCcCCCCCcccccc
Confidence 3445689999999999999999999999999987655 5577899999998 999999999999999986 789999
Q ss_pred eccchh
Q 003717 87 RAKEHY 92 (800)
Q Consensus 87 ~AKpr~ 92 (800)
+|.+-.
T Consensus 527 la~~~~ 532 (975)
T KOG0112|consen 527 LASPPG 532 (975)
T ss_pred cccCCC
Confidence 997653
No 109
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.05 E-value=0.053 Score=62.60 Aligned_cols=61 Identities=18% Similarity=0.319 Sum_probs=52.2
Q ss_pred HHHHHhhhcCCceeEEEEecc-------CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccc
Q 003717 28 DDLAKVFSSLGEVKAVDIVRT-------KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKE 90 (800)
Q Consensus 28 EDLrelFSqFG~VksVrVIRd-------TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKp 90 (800)
++++..+++||.|..|.+.+. .|-|--||+|.+ .+++++|+.+|+|.+|.||.+...+.-+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas--~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFAD--TEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecC--hHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 456677889999999998854 246889999997 9999999999999999999999887643
No 110
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.64 E-value=0.021 Score=60.94 Aligned_cols=69 Identities=20% Similarity=0.350 Sum_probs=58.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccC----------C--C----cEEEEEecCCCHHHHHHHHHhcCC
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK----------G--R----SFGYVDFFPSSHKSLSKLFSTYNG 75 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdT----------G--R----GFGFVEFeS~D~EdAekAIe~LNG 75 (800)
...-||+++||+.+.-..|+++|+.||.|-.|.+-+.. + + --|+|+|.+ ...|..+...||+
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~--KrvAK~iAe~Lnn 150 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFIS--KRVAKRIAELLNN 150 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHH--HHHHHHHHHHhCC
Confidence 45679999999999999999999999999999886321 1 1 247899997 9999999999999
Q ss_pred cEeCCeE
Q 003717 76 CVWKGGR 82 (800)
Q Consensus 76 ~eLdGR~ 82 (800)
..|+|++
T Consensus 151 ~~Iggkk 157 (278)
T KOG3152|consen 151 TPIGGKK 157 (278)
T ss_pred CccCCCC
Confidence 9999975
No 111
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.39 E-value=0.0059 Score=73.02 Aligned_cols=125 Identities=22% Similarity=0.329 Sum_probs=86.6
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEe--cc--CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEE
Q 003717 11 EEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIV--RT--KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLE 86 (800)
Q Consensus 11 ~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVI--Rd--TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe 86 (800)
+...++||.||+..+.+++|...|..+|.+..+++. .. .-||+|||+|.. .+.+.+|+....++.++-..
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~--~~~~~aaV~f~d~~~~gK~~---- 738 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLK--PEHAGAAVAFRDSCFFGKIS---- 738 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeec--CCchhhhhhhhhhhhhhhhh----
Confidence 345689999999999999999999999998777655 22 337999999997 88899888765555444000
Q ss_pred eccchhhHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceeeeccC--CCCCccccc
Q 003717 87 RAKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPFC--GTGKHKYSF 164 (800)
Q Consensus 87 ~AKpr~~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKsVp~p--gTGK~KYGF 164 (800)
+++.+. ++.-+. +.++.+|+..|.++.++.. -.|++|
T Consensus 739 ------------------------------------v~i~g~-pf~gt~-e~~k~l~~~~gn~~~~~~vt~r~gkpk--- 777 (881)
T KOG0128|consen 739 ------------------------------------VAISGP-PFQGTK-EELKSLASKTGNVTSLRLVTVRAGKPK--- 777 (881)
T ss_pred ------------------------------------hheeCC-CCCCch-HHHHhhccccCCccccchhhhhccccc---
Confidence 111111 111212 6788999999999877654 356666
Q ss_pred ccccCCCCCcccccccchhhhhhhhc
Q 003717 165 QRVEAPPLPKYFCDCEEHSAAFHAAE 190 (800)
Q Consensus 165 ~~ve~Ps~pV~F~sfEea~aA~eAmN 190 (800)
.+.|+++++...+....+
T Consensus 778 --------g~a~v~y~~ea~~s~~~~ 795 (881)
T KOG0128|consen 778 --------GKARVDYNTEADASRKVA 795 (881)
T ss_pred --------cceeccCCCcchhhhhcc
Confidence 356777777766665533
No 112
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.33 E-value=0.05 Score=60.34 Aligned_cols=82 Identities=20% Similarity=0.228 Sum_probs=62.7
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcCCc--eeEEEEe--ccC--CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEe
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGE--VKAVDIV--RTK--GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLER 87 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqFG~--VksVrVI--RdT--GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~ 87 (800)
--+|||||-|.+|++||.+.....|- +.++++. |.. .+|||.|...+ .....+.++.|-..+|.|+.-.|.-
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~S--dAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNS--DAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecc--hHHHHHHHHhcccceecCCCCeeec
Confidence 35899999999999999998888775 4444444 222 37999999997 7888888999999999998777766
Q ss_pred ccchhhHHHh
Q 003717 88 AKEHYLARLK 97 (800)
Q Consensus 88 AKpr~~~Rlk 97 (800)
....+..++.
T Consensus 159 ~NK~~~ak~E 168 (498)
T KOG4849|consen 159 YNKTNQAKLE 168 (498)
T ss_pred cchhhHHHHH
Confidence 5555544443
No 113
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.27 E-value=0.05 Score=61.51 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=96.6
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCC-cEeCCeEEEEEeccchh
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNG-CVWKGGRLRLERAKEHY 92 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG-~eLdGR~LrVe~AKpr~ 92 (800)
.+||+|||++.++..+|+.+|...-.-.+-.++- .-||+||++.. ...|.+|++.++| .++.|+++.|...-++.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~--k~gyafvd~pd--q~wa~kaie~~sgk~elqGkr~e~~~sv~kk 77 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--KSGYAFVDCPD--QQWANKAIETLSGKVELQGKRQEVEHSVPKK 77 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee--ecceeeccCCc--hhhhhhhHHhhchhhhhcCceeeccchhhHH
Confidence 4799999999999999999998751111111110 24899999985 9999999999999 58899999999887653
Q ss_pred hHHHhhhHHHHhhhhCCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcccccCccceeee----ccCCCCCccccccccc
Q 003717 93 LARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTL----PFCGTGKHKYSFQRVE 168 (800)
Q Consensus 93 ~~RlkrEraq~rak~~~sp~sD~Vd~~~~kl~is~~Lkksvdesd~LreyFskyGKVKsV----p~pgTGK~KYGF~~ve 168 (800)
.+-.+. +-+ . +...+.+ +-+..+...||.|..+ +++.+--.
T Consensus 78 qrsrk~-----Qir--n---------------ippql~w-----evld~Ll~qyg~ve~~eqvnt~~etavv-------- 122 (584)
T KOG2193|consen 78 QRSRKI-----QIR--N---------------IPPQLQW-----EVLDSLLAQYGTVENCEQVNTDSETAVV-------- 122 (584)
T ss_pred HHhhhh-----hHh--c---------------CCHHHHH-----HHHHHHHhccCCHhHhhhhccchHHHHH--------
Confidence 222110 000 0 0000111 3455566788887643 22322222
Q ss_pred CCCCCcccccccchhhhhhhhccCccccCCCCccccc
Q 003717 169 APPLPKYFCDCEEHSAAFHAAEGKQIHHPAAGQEEIH 205 (800)
Q Consensus 169 ~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n~~q~~i~ 205 (800)
-+.+..-+.|..|++.+||-.+.+-.-++--|+
T Consensus 123 ----nvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 123 ----NVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred ----HHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 257778888999998888877776554444444
No 114
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=94.07 E-value=0.052 Score=60.07 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=66.0
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEE--------Eec--cC--CCcEEEEEecCCCHHHHHHHHHhcCCcE
Q 003717 10 VEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVD--------IVR--TK--GRSFGYVDFFPSSHKSLSKLFSTYNGCV 77 (800)
Q Consensus 10 v~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVr--------VIR--dT--GRGFGFVEFeS~D~EdAekAIe~LNG~e 77 (800)
.....+|||-+|+..++..+|.++|.++|.|..-+ +-+ .| .+|=|.|.|.+ ...|+.|+..+++..
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D--~~~akaai~~~agkd 140 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYED--PPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecC--hhhhhhhhhhhcccc
Confidence 44567999999999999999999999999875421 112 23 36999999996 999999999999999
Q ss_pred eCCeEEEEEeccch
Q 003717 78 WKGGRLRLERAKEH 91 (800)
Q Consensus 78 LdGR~LrVe~AKpr 91 (800)
+.|..|+|..|..+
T Consensus 141 f~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 141 FCGNTIKVSLAERR 154 (351)
T ss_pred ccCCCchhhhhhhc
Confidence 99999999887544
No 115
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=93.94 E-value=0.12 Score=59.44 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=59.0
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcCCceeE-EEEecc---CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEecc
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKA-VDIVRT---KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAK 89 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqFG~Vks-VrVIRd---TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AK 89 (800)
-.|=+.+|||.+|+++|.++|+-.-.|.. +.++.+ +..|-|||.|++ .+.|++|+.. |...|+.|-|.|-.+.
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~s--qe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFES--QESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecC--HHHHHHHHHH-HHHhhccceEEeehhH
Confidence 45677899999999999999998866555 223322 234899999998 9999999864 6788899999998775
Q ss_pred ch
Q 003717 90 EH 91 (800)
Q Consensus 90 pr 91 (800)
..
T Consensus 181 ~~ 182 (510)
T KOG4211|consen 181 RA 182 (510)
T ss_pred HH
Confidence 44
No 116
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=93.26 E-value=0.27 Score=55.22 Aligned_cols=73 Identities=22% Similarity=0.207 Sum_probs=62.0
Q ss_pred EeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeC--CeEEEEEeccchhh
Q 003717 18 VGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWK--GGRLRLERAKEHYL 93 (800)
Q Consensus 18 VGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLd--GR~LrVe~AKpr~~ 93 (800)
|-|--+.+|-+-|..+.-..|.|.++.|++.++ -.|.|+|++ .+.|++|...|||..|. -..|+|++|+|..+
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkkng-VQAmVEFds--v~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKKNG-VQAMVEFDS--VEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEeccc-eeeEEeech--hHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 345557899999999999999999998886533 379999998 99999999999999885 47999999999744
No 117
>smart00361 RRM_1 RNA recognition motif.
Probab=93.23 E-value=0.045 Score=46.27 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=37.9
Q ss_pred hhhccccc----Cccceeee----ccCCC--CCcc-cccccccCCCCCcccccccchhhhhhhhccCcccc
Q 003717 137 KKLNIFFP----RLRKVKTL----PFCGT--GKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHH 196 (800)
Q Consensus 137 d~LreyFs----kyGKVKsV----p~pgT--GK~K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n 196 (800)
++|+.+|. .||.|..+ ..+.+ |+++ ||| |.|.+.+++..|+..|||..+.-
T Consensus 3 ~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~f---------V~f~~~~dA~~A~~~l~g~~~~g 64 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVY---------ITFERSEDAARAIVDLNGRYFDG 64 (70)
T ss_pred hhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEE---------EEECCHHHHHHHHHHhCCCEECC
Confidence 56777777 88886543 33444 7666 555 89999999999999999987643
No 118
>smart00360 RRM RNA recognition motif.
Probab=93.00 E-value=0.071 Score=41.30 Aligned_cols=55 Identities=25% Similarity=0.423 Sum_probs=40.2
Q ss_pred CCCCCcchhhcccccCccceeee---ccCCCCCcc-cccccccCCCCCcccccccchhhhhhhhccCcc
Q 003717 130 KKLLDKDKKLNIFFPRLRKVKTL---PFCGTGKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQI 194 (800)
Q Consensus 130 kksvdesd~LreyFskyGKVKsV---p~pgTGK~K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i 194 (800)
+..+.. ++|+.+|..||.|..+ +.+.+++++ |+| +.|.+.+++..|+..++|..+
T Consensus 5 ~~~~~~-~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~---------v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 5 PPDVTE-EELRELFSKFGKIESVRLVRDKDTGKSKGFAF---------VEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CcccCH-HHHHHHHHhhCCEeEEEEEeCCCCCCCCceEE---------EEeCCHHHHHHHHHHcCCCee
Confidence 334444 8899999999986544 334456666 666 889999999999888886555
No 119
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=92.89 E-value=0.058 Score=57.49 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=48.5
Q ss_pred CCCCCCcchhhcccccCcccee---eeccCCCCCcc-cccccccCCCCCcccccccchhhhhhhhccCccccC
Q 003717 129 PKKLLDKDKKLNIFFPRLRKVK---TLPFCGTGKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHP 197 (800)
Q Consensus 129 Lkksvdesd~LreyFskyGKVK---sVp~pgTGK~K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~ 197 (800)
|..+..+ ++|.++|..||-|. .++++.||.+| |+| |+|.+.++|..|++.+||--+.++
T Consensus 197 Lsed~~E-~dL~eLf~~fg~i~rvylardK~TG~~kGFAF---------VtF~sRddA~rAI~~LnG~gyd~L 259 (270)
T KOG0122|consen 197 LSEDMRE-DDLEELFRPFGPITRVYLARDKETGLSKGFAF---------VTFESRDDAARAIADLNGYGYDNL 259 (270)
T ss_pred CccccCh-hHHHHHhhccCccceeEEEEccccCcccceEE---------EEEecHHHHHHHHHHccCcccceE
Confidence 3555555 88999999999854 57889999998 555 999999999999999998766654
No 120
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.61 E-value=0.14 Score=59.66 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=56.6
Q ss_pred CcEEEEeCCCCCCCH--H----HHHHhhhcCCceeEEEEecc--CC-CcEEEEEecCCCHHHHHHHHHhcCCcEeC-CeE
Q 003717 13 QTRIYVGGLGEKVTD--D----DLAKVFSSLGEVKAVDIVRT--KG-RSFGYVDFFPSSHKSLSKLFSTYNGCVWK-GGR 82 (800)
Q Consensus 13 srTLFVGNLP~nVTE--E----DLrelFSqFG~VksVrVIRd--TG-RGFGFVEFeS~D~EdAekAIe~LNG~eLd-GR~ 82 (800)
..-|+|-|+|---.. + -|..+|+++|.|+...++.+ .| +||.|++|.+ ..+|+.|+..|||+.|+ ...
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~--~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYAS--MRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecC--hhhHHHHHHhcccceecccce
Confidence 457899998854332 2 35688999999999888722 33 7999999997 99999999999999886 556
Q ss_pred EEEE
Q 003717 83 LRLE 86 (800)
Q Consensus 83 LrVe 86 (800)
+.|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 6664
No 121
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=92.53 E-value=0.28 Score=40.58 Aligned_cols=52 Identities=21% Similarity=0.441 Sum_probs=40.2
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHH
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLF 70 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAI 70 (800)
+.|-|.|.+....+ .+...|.+||.|..+.+. ...-+.||.|.+ ..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~--~~~~~~~l~y~~--~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP--ESTNWMYLKYKS--RKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC--CCCcEEEEEECC--HHHHHhhC
Confidence 45778888766554 455689999999998774 235689999997 99998885
No 122
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=92.40 E-value=0.2 Score=56.47 Aligned_cols=72 Identities=18% Similarity=0.305 Sum_probs=55.5
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc---C----CCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEE
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT---K----GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLE 86 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd---T----GRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe 86 (800)
.-|-|.||++.+|.++++.+|+-.|.|..+.+... . ..-.|||.|.+ ...+ .+...|-.+.+-++.|.|-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d--~~sv-~vaQhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLD--SQSV-TVAQHLTNTVFVDRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccC--Ccce-eHHhhhccceeeeeeEEEE
Confidence 47899999999999999999999999999988732 1 14689999995 4444 4445667777777777665
Q ss_pred ec
Q 003717 87 RA 88 (800)
Q Consensus 87 ~A 88 (800)
.+
T Consensus 85 p~ 86 (479)
T KOG4676|consen 85 PY 86 (479)
T ss_pred ec
Confidence 54
No 123
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=92.32 E-value=0.26 Score=56.90 Aligned_cols=61 Identities=28% Similarity=0.458 Sum_probs=51.1
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHhhh-cCCceeEEEEecc-C---CCcEEEEEecCCCHHHHHHHHHh
Q 003717 10 VEEQTRIYVGGLGEKVTDDDLAKVFS-SLGEVKAVDIVRT-K---GRSFGYVDFFPSSHKSLSKLFST 72 (800)
Q Consensus 10 v~qsrTLFVGNLP~nVTEEDLrelFS-qFG~VksVrVIRd-T---GRGFGFVEFeS~D~EdAekAIe~ 72 (800)
++..+|||||+||.-++.++|-.+|. -||.|..|-|=+| . .+|-|-|+|.+ ..+-.+||.+
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsn--qqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSN--QQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecc--cHHHHHHHhh
Confidence 45678999999999999999999999 6999998887554 1 37999999997 7777778763
No 124
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=92.10 E-value=0.071 Score=42.73 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=35.7
Q ss_pred hcccccCccceeeeccCCCCCcccccccccCCCCCcccccccchhhhhhhhccCcc
Q 003717 139 LNIFFPRLRKVKTLPFCGTGKHKYSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQI 194 (800)
Q Consensus 139 LreyFskyGKVKsVp~pgTGK~KYGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i 194 (800)
|..+|++||+|..+...... ..++| |.|.+.++|..|...+||..+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~---------V~f~~~~~A~~a~~~l~~~~~ 46 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAF---------VEFASVEDAQKAIEQLNGRQF 46 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEE---------EEESSHHHHHHHHHHHTTSEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEE---------EEECCHHHHHHHHHHhCCCEE
Confidence 46789999999876554433 23456 899999999999999999886
No 125
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.09 E-value=0.55 Score=46.80 Aligned_cols=80 Identities=25% Similarity=0.335 Sum_probs=49.4
Q ss_pred CcEEEEeCCC-----CCCCHH----HHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEE
Q 003717 13 QTRIYVGGLG-----EKVTDD----DLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRL 83 (800)
Q Consensus 13 srTLFVGNLP-----~nVTEE----DLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~L 83 (800)
..+|-|.=+. ...-++ +|-+.|..||.|.-++++. +.-+|+|.. -..|.+|+. |+|..++|+.|
T Consensus 27 DaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~d--g~sALaals-~dg~~v~g~~l 99 (146)
T PF08952_consen 27 DATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRD--GQSALAALS-LDGIQVNGRTL 99 (146)
T ss_dssp T-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESS--CHHHHHHHH-GCCSEETTEEE
T ss_pred CceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECc--cHHHHHHHc-cCCcEECCEEE
Confidence 3566666555 112222 6778899999988887764 357899996 788888775 89999999999
Q ss_pred EEEeccchhhHHHhhh
Q 003717 84 RLERAKEHYLARLKRE 99 (800)
Q Consensus 84 rVe~AKpr~~~RlkrE 99 (800)
+|..-.|.+......+
T Consensus 100 ~i~LKtpdW~~~l~~E 115 (146)
T PF08952_consen 100 KIRLKTPDWLKGLEEE 115 (146)
T ss_dssp EEEE------------
T ss_pred EEEeCCccHHHHHHHH
Confidence 9999888877655443
No 126
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=91.86 E-value=0.88 Score=42.55 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=50.6
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEe-----------ccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCe-
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIV-----------RTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGG- 81 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqFG~VksVrVI-----------RdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR- 81 (800)
.-|.|=+.|.. ....+.++|++||.|.+..-+ ...+...-.|.|.+ ..+|.+|+. .||..|.|.
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~--~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDN--PLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESS--HHHHHHHHT-TTTEEETTCE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCC--HHHHHHHHH-hCCeEEcCcE
Confidence 45778888888 445677889999999876411 11356789999998 999999997 599999885
Q ss_pred EEEEEeccc
Q 003717 82 RLRLERAKE 90 (800)
Q Consensus 82 ~LrVe~AKp 90 (800)
.+-|.++++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 455666643
No 127
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=91.80 E-value=0.17 Score=57.42 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=53.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc-----CC------------CcEEEEEecCCCHHHHHHHHHhcC
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT-----KG------------RSFGYVDFFPSSHKSLSKLFSTYN 74 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd-----TG------------RGFGFVEFeS~D~EdAekAIe~LN 74 (800)
+.++|.+-|||.+-.-+.|.++|+.+|.|..|+|+.- .. +-+|||+|.. .+.|.+|.+.||
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~--~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEE--VEAARKARELLN 307 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhh--hHHHHHHHHhhc
Confidence 5789999999999999999999999999999999822 11 2489999997 999999999886
Q ss_pred C
Q 003717 75 G 75 (800)
Q Consensus 75 G 75 (800)
-
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 4
No 128
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=91.51 E-value=0.092 Score=56.17 Aligned_cols=59 Identities=17% Similarity=0.324 Sum_probs=49.4
Q ss_pred HHHHHhhh-cCCceeEEEEeccCC---CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 28 DDLAKVFS-SLGEVKAVDIVRTKG---RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 28 EDLrelFS-qFG~VksVrVIRdTG---RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
++|...|+ +||.|..+.|..+.+ +|=.||.|.. .++|++|+..||+..+.|++|..++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~--Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRS--EEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhccc--HHHHHHHHHHHcCccccCCcceeeec
Confidence 44555555 899999987764333 7999999998 99999999999999999999999876
No 129
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=91.16 E-value=0.53 Score=56.30 Aligned_cols=72 Identities=13% Similarity=0.106 Sum_probs=60.6
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEe--ccCC--CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEe
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIV--RTKG--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLER 87 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqFG~VksVrVI--RdTG--RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~ 87 (800)
+-|-+.|+|+.++-+|+.++|..|-.+-.-.++ .+.| .|-|-|.|++ .++|..|...|++..|..|.|.+.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes--~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFES--QEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecC--HHHHHhhhhccccCcccceeEEEEe
Confidence 367899999999999999999999766544334 2344 4899999998 9999999999999999999998764
No 130
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=90.90 E-value=0.12 Score=42.56 Aligned_cols=58 Identities=22% Similarity=0.399 Sum_probs=42.1
Q ss_pred CCCCCCcchhhcccccCccceeeeccCC--CCCcc-cccccccCCCCCcccccccchhhhhhhhccCcccc
Q 003717 129 PKKLLDKDKKLNIFFPRLRKVKTLPFCG--TGKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHH 196 (800)
Q Consensus 129 Lkksvdesd~LreyFskyGKVKsVp~pg--TGK~K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n 196 (800)
++..++. ++|+.+|..||.|..+.... .|..+ |+| |.|.+.+++..|+...+|..++.
T Consensus 6 lp~~~~~-~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~---------v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 6 LPPSTTE-EDLRNFFSRFGPVEKVRLIKNKDGQSRGFAF---------VEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp STTT--H-HHHHHHCTTSSBEEEEEEEESTTSSEEEEEE---------EEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCH-HHHHHHHHhcCCcceEEEEeeeccccCCEEE---------EEeCCHHHHHHHHHHCCCcEECC
Confidence 4555655 89999999999876554432 25544 666 89999999999999988766643
No 131
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=90.62 E-value=0.14 Score=48.98 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=53.4
Q ss_pred CcccCCCCCCCCCcchhhcccccCccceee---eccCCCCCcc-cccccccCCCCCcccccccchhhhhhhhccCccccC
Q 003717 122 DATRLDTPKKLLDKDKKLNIFFPRLRKVKT---LPFCGTGKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHP 197 (800)
Q Consensus 122 kl~is~~Lkksvdesd~LreyFskyGKVKs---Vp~pgTGK~K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~ 197 (800)
.++++ .|...+++ +.|+.+|..||.|.. +.++.+|+.+ |+| |.|.+.+++..|++.++|..+..
T Consensus 117 ~l~v~-nL~~~~~~-~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~---------v~f~~~~~~~~a~~~~~~~~~~~- 184 (306)
T COG0724 117 TLFVG-NLPYDVTE-EDLRELFKKFGPVKRVRLVRDRETGKSRGFAF---------VEFESEESAEKAIEELNGKELEG- 184 (306)
T ss_pred eEEEe-CCCCCCCH-HHHHHHHHhcCceeEEEeeeccccCccCceEE---------EEecCHHHHHHHHHHcCCCeECC-
Confidence 34444 46777766 999999999999744 4445688887 666 89999999999999999877755
Q ss_pred CCCccccch
Q 003717 198 AAGQEEIHD 206 (800)
Q Consensus 198 n~~q~~i~~ 206 (800)
.-+.|..
T Consensus 185 --~~~~v~~ 191 (306)
T COG0724 185 --RPLRVQK 191 (306)
T ss_pred --ceeEeec
Confidence 3444544
No 132
>PLN03120 nucleic acid binding protein; Provisional
Probab=90.45 E-value=0.14 Score=55.08 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=48.1
Q ss_pred cccCCCCCCCCCcchhhcccccCccceeeeccCCCCC-cccccccccCCCCCcccccccchhhhhhhhccCccccCCCCc
Q 003717 123 ATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPFCGTGK-HKYSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHPAAGQ 201 (800)
Q Consensus 123 l~is~~Lkksvdesd~LreyFskyGKVKsVp~pgTGK-~KYGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n~~q 201 (800)
+++++ |...+++ ++|+.||+.||+|..+.....+. .+||| |.|-+-+++..|+. |||..+. |..
T Consensus 7 VfVgN-Ls~~tTE-~dLrefFS~~G~I~~V~I~~d~~~~GfAF---------VtF~d~eaAe~All-LnG~~l~---gr~ 71 (260)
T PLN03120 7 VKVSN-VSLKATE-RDIKEFFSFSGDIEYVEMQSENERSQIAY---------VTFKDPQGAETALL-LSGATIV---DQS 71 (260)
T ss_pred EEEeC-CCCCCCH-HHHHHHHHhcCCeEEEEEeecCCCCCEEE---------EEeCcHHHHHHHHH-hcCCeeC---Cce
Confidence 34433 5666766 89999999999998776654332 34666 78888888888884 7776664 455
Q ss_pred cccchh
Q 003717 202 EEIHDM 207 (800)
Q Consensus 202 ~~i~~~ 207 (800)
+.|..+
T Consensus 72 V~Vt~a 77 (260)
T PLN03120 72 VTITPA 77 (260)
T ss_pred EEEEec
Confidence 666543
No 133
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=90.04 E-value=0.33 Score=57.02 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=64.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhhcC-CceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEe---CCeEEEEEe
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSL-GEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVW---KGGRLRLER 87 (800)
Q Consensus 12 qsrTLFVGNLP~nVTEEDLrelFSqF-G~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eL---dGR~LrVe~ 87 (800)
...-|||.||=.-.|.-+|+.++++- |.|... +| ++-+..|||.|.+ .++|...+.+|||..| +++.|.+.|
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-DkIKShCyV~yss--~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-DKIKSHCYVSYSS--VEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH-HH-HHhhcceeEeccc--HHHHHHHHHHHhccccCCCCCceeEeee
Confidence 35679999999999999999999964 555554 43 3346789999998 9999999999999999 578999999
Q ss_pred ccchhhH
Q 003717 88 AKEHYLA 94 (800)
Q Consensus 88 AKpr~~~ 94 (800)
+....+.
T Consensus 519 ~~~deld 525 (718)
T KOG2416|consen 519 VRADELD 525 (718)
T ss_pred cchhHHH
Confidence 8765444
No 134
>smart00362 RRM_2 RNA recognition motif.
Probab=89.92 E-value=0.21 Score=38.86 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=40.0
Q ss_pred CCCCCcchhhcccccCccceeeeccCCC-CCcc-cccccccCCCCCcccccccchhhhhhhhccCcc
Q 003717 130 KKLLDKDKKLNIFFPRLRKVKTLPFCGT-GKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQI 194 (800)
Q Consensus 130 kksvdesd~LreyFskyGKVKsVp~pgT-GK~K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i 194 (800)
+..++. ++|+.+|..||.|..+..... |.++ |+| +.|.+.+++..|+..++|..+
T Consensus 8 ~~~~~~-~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~---------v~f~~~~~a~~a~~~~~~~~~ 64 (72)
T smart00362 8 PPDVTE-EDLKELFSKFGPIESVKIPKDTGKSKGFAF---------VEFESEEDAEKAIEALNGTKL 64 (72)
T ss_pred CCcCCH-HHHHHHHHhcCCEEEEEEecCCCCCCceEE---------EEeCCHHHHHHHHHHhCCcEE
Confidence 444544 889999999999775544322 4443 666 899999999999999888665
No 135
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=89.64 E-value=0.83 Score=47.59 Aligned_cols=66 Identities=18% Similarity=0.316 Sum_probs=57.2
Q ss_pred hccCCcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeC
Q 003717 9 EVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWK 79 (800)
Q Consensus 9 Ev~qsrTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLd 79 (800)
..+...++.|.+||...++.+|++.....|.|....+.++ |+|.|+|.. .++...|+..|....+.
T Consensus 111 srrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD---g~GvV~~~r--~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 111 SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD---GVGVVEYLR--KEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc---cceeeeeee--hhhHHHHHHhhcccccc
Confidence 3445678999999999999999999999999988877554 699999997 99999999999876664
No 136
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.39 E-value=0.16 Score=56.00 Aligned_cols=82 Identities=16% Similarity=0.291 Sum_probs=65.8
Q ss_pred cEEEEeCCCCCCCHHHHH---HhhhcCCceeEEEEeccC----C---CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEE
Q 003717 14 TRIYVGGLGEKVTDDDLA---KVFSSLGEVKAVDIVRTK----G---RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRL 83 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLr---elFSqFG~VksVrVIRdT----G---RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~L 83 (800)
.-+||-+|+..+.++.+. ++|++||.|..+.+-+++ + -.-+||+|.. .++|..||...+|..++|+.|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~--~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEE--EEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccc--hHhhhhHHHHhhhHHhhhhhh
Confidence 457888999887766543 789999999998876543 1 2358999997 899999999999999999999
Q ss_pred EEEeccchhhHHHh
Q 003717 84 RLERAKEHYLARLK 97 (800)
Q Consensus 84 rVe~AKpr~~~Rlk 97 (800)
+..++..+|-....
T Consensus 156 ka~~gttkycs~~l 169 (327)
T KOG2068|consen 156 KASLGTTKYCSFYL 169 (327)
T ss_pred HHhhCCCcchhHHh
Confidence 98888877655443
No 137
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.97 E-value=0.9 Score=49.95 Aligned_cols=60 Identities=20% Similarity=0.153 Sum_probs=49.4
Q ss_pred HHHHHhhhcCCceeEEEEeccCC-----CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEecc
Q 003717 28 DDLAKVFSSLGEVKAVDIVRTKG-----RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAK 89 (800)
Q Consensus 28 EDLrelFSqFG~VksVrVIRdTG-----RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AK 89 (800)
+++.+..++||.|..|.|.-..+ .---||+|.. .+.|.+|+-.|||..|+||.++..|..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r--~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFER--VESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeecc--HHHHHHHHHhcCCceecceeeeheecc
Confidence 46778899999999987762211 2458999997 999999999999999999999887754
No 138
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=88.89 E-value=0.17 Score=53.16 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=41.4
Q ss_pred hhhcccccCcccee---eeccCCCCCcc-cccccccCCCCCcccccccchhhhhhhhccCcc
Q 003717 137 KKLNIFFPRLRKVK---TLPFCGTGKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQI 194 (800)
Q Consensus 137 d~LreyFskyGKVK---sVp~pgTGK~K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i 194 (800)
++|+-.|.+||.|- +.+++.|+..+ |+| |-|.+-.++..|++||.|..+
T Consensus 28 d~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaF---------Vrf~~k~daedA~damDG~~l 80 (256)
T KOG4207|consen 28 DDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAF---------VRFHDKRDAEDALDAMDGAVL 80 (256)
T ss_pred HHHHHHHHHhCcccceecccccccccccceeE---------EEeeecchHHHHHHhhcceee
Confidence 89999999999964 45566788887 777 889999999999999998765
No 139
>PLN03121 nucleic acid binding protein; Provisional
Probab=88.45 E-value=0.24 Score=52.76 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=44.3
Q ss_pred CCCCCCcchhhcccccCccceeeeccCCCCCcc-cccccccCCCCCcccccccchhhhhhhhccCccccC
Q 003717 129 PKKLLDKDKKLNIFFPRLRKVKTLPFCGTGKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHP 197 (800)
Q Consensus 129 Lkksvdesd~LreyFskyGKVKsVp~pgTGK~K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~ 197 (800)
|...+++ ++|++||+.||+|..+.....++.+ ||| |.|.+.+.+..|+ -++|..|...
T Consensus 13 LS~~tTE-~dLrefFS~~G~I~~V~I~~D~et~gfAf---------VtF~d~~aaetAl-lLnGa~l~d~ 71 (243)
T PLN03121 13 LSPKATE-KDVYDFFSHCGAIEHVEIIRSGEYACTAY---------VTFKDAYALETAV-LLSGATIVDQ 71 (243)
T ss_pred CCCCCCH-HHHHHHHHhcCCeEEEEEecCCCcceEEE---------EEECCHHHHHHHH-hcCCCeeCCc
Confidence 4566656 9999999999998877666555544 555 8899999998888 4888877543
No 140
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=87.74 E-value=0.68 Score=52.35 Aligned_cols=79 Identities=11% Similarity=0.177 Sum_probs=62.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCc-eeE--EEEe-ccCC--CcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEE
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGE-VKA--VDIV-RTKG--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLE 86 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~-Vks--VrVI-RdTG--RGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe 86 (800)
..-|-..+||+..+-++|..+|..|.. |.- |.|+ ...| .|-|||.|.+ .++|..|+..-+.+...+|.|+|-
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~n--ae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRN--AERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhh--hHHHHHHHHHHHHhhcccceEEEe
Confidence 446788999999999999999999976 333 5555 3344 4999999998 899999988877777789999998
Q ss_pred eccchhh
Q 003717 87 RAKEHYL 93 (800)
Q Consensus 87 ~AKpr~~ 93 (800)
.+.-..+
T Consensus 358 p~S~eel 364 (508)
T KOG1365|consen 358 PCSVEEL 364 (508)
T ss_pred eccHHHH
Confidence 7765443
No 141
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=87.38 E-value=0.27 Score=59.49 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=65.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc---CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEecc
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT---KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAK 89 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd---TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AK 89 (800)
...+||.|+|+..|.+.|+.+|..+|.+.+.+++.. ..+|.+||.|.+ ..++.+++..+++..+.-+.+.|..+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~--ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNT--EADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCC--cchhhhhcccchhhhhhhcCccccccC
Confidence 457999999999999999999999999999987732 347999999998 999999999888888887777777766
Q ss_pred c
Q 003717 90 E 90 (800)
Q Consensus 90 p 90 (800)
|
T Consensus 814 p 814 (881)
T KOG0128|consen 814 P 814 (881)
T ss_pred C
Confidence 5
No 142
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=86.61 E-value=0.3 Score=53.47 Aligned_cols=62 Identities=24% Similarity=0.234 Sum_probs=47.4
Q ss_pred CcccCCCCCCCCCcchhhcccccCcccee---eeccCCCCCcc-cccccccCCCCCcccccccchhhhhhhhccCcc
Q 003717 122 DATRLDTPKKLLDKDKKLNIFFPRLRKVK---TLPFCGTGKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQI 194 (800)
Q Consensus 122 kl~is~~Lkksvdesd~LreyFskyGKVK---sVp~pgTGK~K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i 194 (800)
.+|+.. |+-++++ ..|+.+|..||.|+ .|++.-|||++ |+| |.|-.--+-..|...+.|+.|
T Consensus 103 TLFv~R-LnydT~E-skLrreF~~YG~IkrirlV~d~vTgkskGYAF---------Ieye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 103 TLFVAR-LNYDTSE-SKLRREFEKYGPIKRIRLVRDKVTGKSKGYAF---------IEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred eeeeee-ccccccH-HHHHHHHHhcCcceeEEEeeecccCCccceEE---------EEeccHHHHHHHHHhccCcee
Confidence 455543 4556655 89999999999976 46777899998 999 677777777888888777665
No 143
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=85.94 E-value=0.77 Score=49.53 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=54.3
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEec-cC--CCcEEEEEecCCCHHHHHHHHHhcCCc----EeCCeEEEEE
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVR-TK--GRSFGYVDFFPSSHKSLSKLFSTYNGC----VWKGGRLRLE 86 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIR-dT--GRGFGFVEFeS~D~EdAekAIe~LNG~----eLdGR~LrVe 86 (800)
.-|||.||+.-++.+.|.+.|+.||+|....++- +. +-|-++|.|.. ...|.+|+...+-. ...|++.-|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~--k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAK--KPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhc--chhHHHHHHHhccCccccCCCCCccCCC
Confidence 5799999999999999999999999998877763 23 34789999997 77888887765322 3344554444
No 144
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=85.19 E-value=0.46 Score=49.75 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=60.1
Q ss_pred CCCCCCCcchhhcccccCc-cceeeecc---CCCCCcc-cccccccCCCCCcccccccchhhhhhhhccCccccCCCCcc
Q 003717 128 TPKKLLDKDKKLNIFFPRL-RKVKTLPF---CGTGKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHPAAGQE 202 (800)
Q Consensus 128 ~Lkksvdesd~LreyFsky-GKVKsVp~---pgTGK~K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n~~q~ 202 (800)
.++..+.+ ..+..||.++ |.|..+++ +-||.+| ||| |.|-+-|.|.-|-+.|| .|+.- ++-.
T Consensus 56 ~~p~g~~e-~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAF---------VEFEs~eVA~IaAETMN-NYLl~--e~lL 122 (214)
T KOG4208|consen 56 HIPHGFFE-TEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAF---------VEFESEEVAKIAAETMN-NYLLM--EHLL 122 (214)
T ss_pred ccccchhH-HHHhhhhhhcCCeeEEEEeecccccCCcCceEE---------EEeccHHHHHHHHHHhh-hhhhh--hhee
Confidence 34556666 6677777777 66766555 5799998 999 89999999999999999 56543 2223
Q ss_pred ccchhhhcCcccchHHHHHHhHHHHHHhhhhccc
Q 003717 203 EIHDMEELGASVINEEELNLMNSVMNKLFERENV 236 (800)
Q Consensus 203 ~i~~~ee~~gsg~~~~e~n~MnsVmnklfeke~v 236 (800)
+.+-|.+-+ ...+.|-.|...+|.+..-
T Consensus 123 ~c~vmppe~------~v~~~~~k~~~~~~~~~~~ 150 (214)
T KOG4208|consen 123 ECHVMPPEQ------KVEKNLKKVSGTPFKPGKT 150 (214)
T ss_pred eeEEeCchh------hhhhhhhhhcCCcCCCCCc
Confidence 334344331 1256666677777766543
No 145
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=84.71 E-value=0.89 Score=54.50 Aligned_cols=77 Identities=13% Similarity=0.060 Sum_probs=62.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeE-EEEe---ccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKA-VDIV---RTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~Vks-VrVI---RdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
..-|||-.||..+++.++-++|...-.|++ +.+- ++.-++-|||.|.. .+++..|...-..+.++.|.|+|.-.
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~--~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIH--PTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheecc--ccccchhhhcccccccCceEEEeech
Confidence 467999999999999999999998888877 4443 33447999999996 78888888877778888899999865
Q ss_pred cch
Q 003717 89 KEH 91 (800)
Q Consensus 89 Kpr 91 (800)
...
T Consensus 512 ~~~ 514 (944)
T KOG4307|consen 512 ADY 514 (944)
T ss_pred hhH
Confidence 433
No 146
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=83.95 E-value=1 Score=39.13 Aligned_cols=67 Identities=25% Similarity=0.501 Sum_probs=39.9
Q ss_pred EEEEe-CCCCCCCHHHHHHhhhcCCce-----eEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 15 RIYVG-GLGEKVTDDDLAKVFSSLGEV-----KAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 15 TLFVG-NLP~nVTEEDLrelFSqFG~V-----ksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
+|||. |--..++..+|..++...+.| -.+.|. .-|.||+-. .+.|..++..|++..+.|++|+|+.|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~----~~~S~vev~---~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF----DNFSFVEVP---EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE----TT-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe----eeEEEEEEC---HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45553 123467888999888877544 344443 359999998 58999999999999999999999876
No 147
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=83.03 E-value=0.4 Score=47.83 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=44.5
Q ss_pred hhhcccccCccceeeecc---CCCCCcc-cccccccCCCCCcccccccchhhhhhhhccCcccc
Q 003717 137 KKLNIFFPRLRKVKTLPF---CGTGKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHH 196 (800)
Q Consensus 137 d~LreyFskyGKVKsVp~---pgTGK~K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n 196 (800)
+++...|..||.||.+.+ +-||..| |+. |.|...+++.+|++++||+.+..
T Consensus 87 edi~d~F~dyGeiKNihLNLDRRtGy~KGYaL---------vEYet~keAq~A~~~~Ng~~ll~ 141 (170)
T KOG0130|consen 87 EDIHDKFADYGEIKNIHLNLDRRTGYVKGYAL---------VEYETLKEAQAAIDALNGAELLG 141 (170)
T ss_pred HHHHHHHhhcccccceeeccccccccccceee---------eehHhHHHHHHHHHhccchhhhC
Confidence 889999999999998766 4688887 766 78899999999999999988765
No 148
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=82.72 E-value=1.1 Score=49.80 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=44.0
Q ss_pred CCCCCCcchhhcccccCccceee--eccCCCCCcccccccccCCCCCcccccccchhhhhhhhccCccc
Q 003717 129 PKKLLDKDKKLNIFFPRLRKVKT--LPFCGTGKHKYSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIH 195 (800)
Q Consensus 129 Lkksvdesd~LreyFskyGKVKs--Vp~pgTGK~KYGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~ 195 (800)
+++.+.+ .+|+..|.+||+|-. |-+.+.|-..||| |.|-..++++.|-++++|-++.
T Consensus 104 IPFrFRd-pDL~aMF~kfG~VldVEIIfNERGSKGFGF---------VTmen~~dadRARa~LHgt~VE 162 (376)
T KOG0125|consen 104 IPFRFRD-PDLRAMFEKFGKVLDVEIIFNERGSKGFGF---------VTMENPADADRARAELHGTVVE 162 (376)
T ss_pred CCccccC-ccHHHHHHhhCceeeEEEEeccCCCCccce---------EEecChhhHHHHHHHhhcceee
Confidence 5777766 899999999999753 3356677777888 7777778888888888877663
No 149
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=81.99 E-value=4.1 Score=41.85 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=44.6
Q ss_pred HHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcC--CcEeCCeEEEEEeccch
Q 003717 27 DDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYN--GCVWKGGRLRLERAKEH 91 (800)
Q Consensus 27 EEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LN--G~eLdGR~LrVe~AKpr 91 (800)
...|+++|..|+.+.....++.-+| ..|.|.+ .+.|..|...|+ +..+.|..|+|.++.+-
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sFrR--i~v~f~~--~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSFRR--IRVVFES--PESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTTTE--EEEE-SS--TTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCCCCE--EEEEeCC--HHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4689999999999888777653333 6788887 999999999999 99999999999998543
No 150
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=81.44 E-value=0.47 Score=50.38 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=47.5
Q ss_pred CCCCCCCCcchhhcccccCccceeeeccC---CCCCcc-cccccccCCCCCcccccccchhhhhhhhccCcccc
Q 003717 127 DTPKKLLDKDKKLNIFFPRLRKVKTLPFC---GTGKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHH 196 (800)
Q Consensus 127 ~~Lkksvdesd~LreyFskyGKVKsVp~p---gTGK~K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n 196 (800)
+.|...+++ .-|...|=.||.|+.|..| .++||+ ||| |.|--.|++.+|+.-||+..++-
T Consensus 16 GGladeVte-kvLhaAFIPFGDI~dIqiPlDyesqkHRgFgF---------Vefe~aEDAaaAiDNMnesEL~G 79 (298)
T KOG0111|consen 16 GGLADEVTE-KVLHAAFIPFGDIKDIQIPLDYESQKHRGFGF---------VEFEEAEDAAAAIDNMNESELFG 79 (298)
T ss_pred ccchHHHHH-HHHHhccccccchhhcccccchhcccccceeE---------EEeeccchhHHHhhcCchhhhcc
Confidence 345666756 7788899999998765444 689998 777 88999999999999999877754
No 151
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=80.08 E-value=0.91 Score=47.17 Aligned_cols=61 Identities=20% Similarity=0.164 Sum_probs=41.6
Q ss_pred cccCCCCCCCCCcchhhcccccCcccee---eeccCCCCCcccccccccCCCCCcccccccchh---hhhhhhccCcccc
Q 003717 123 ATRLDTPKKLLDKDKKLNIFFPRLRKVK---TLPFCGTGKHKYSFQRVEAPPLPKYFCDCEEHS---AAFHAAEGKQIHH 196 (800)
Q Consensus 123 l~is~~Lkksvdesd~LreyFskyGKVK---sVp~pgTGK~KYGF~~ve~Ps~pV~F~sfEea~---aA~eAmNG~~i~n 196 (800)
+++ +.|+..+++ .+|-..|++||.|. .||++.||++| || .|.-.|+.. -|..-+||.-|.-
T Consensus 38 Iyi-ggl~~~LtE-gDil~VFSqyGe~vdinLiRDk~TGKSK-GF----------aFLcYEDQRSTILAVDN~NGiki~g 104 (219)
T KOG0126|consen 38 IYI-GGLPYELTE-GDILCVFSQYGEIVDINLIRDKKTGKSK-GF----------AFLCYEDQRSTILAVDNLNGIKILG 104 (219)
T ss_pred EEE-CCCcccccC-CcEEEEeeccCceEEEEEEecCCCCccc-ce----------EEEEecCccceEEEEeccCCceecc
Confidence 344 447888877 78889999999954 57999999999 44 233334443 3555667766543
No 152
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=79.51 E-value=1.2 Score=51.20 Aligned_cols=60 Identities=22% Similarity=0.194 Sum_probs=48.1
Q ss_pred CCCCCCCCcchhhcccccCcccee---eeccCCCCCcc-cccccccCCCCCcccccccchhhhhhhhccCcccc
Q 003717 127 DTPKKLLDKDKKLNIFFPRLRKVK---TLPFCGTGKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHH 196 (800)
Q Consensus 127 ~~Lkksvdesd~LreyFskyGKVK---sVp~pgTGK~K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n 196 (800)
+.++.++.+ +.|..+|+++|.|. .+-++.||+.+ ||| +.|-+-+++..|.+-+||..+--
T Consensus 24 gnip~~~se-~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f---------~~~~~~~~~~~a~~~lNg~~~~g 87 (435)
T KOG0108|consen 24 GNIPYEGSE-EQLLSIFSGVGPVLSFRLVYDRETGKPKGFGF---------CEFTDEETAERAIRNLNGAEFNG 87 (435)
T ss_pred cCCCCcccH-HHHHHHHhccCccceeeecccccCCCcCceee---------EecCchhhHHHHHHhcCCcccCC
Confidence 445777766 89999999999975 45667999998 666 78888888999999999877643
No 153
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=76.56 E-value=6.5 Score=44.87 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=49.1
Q ss_pred EEEEeCCCCCCCHHHHHHhhhcC----CceeEEEEe-ccCCC--cEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEE
Q 003717 15 RIYVGGLGEKVTDDDLAKVFSSL----GEVKAVDIV-RTKGR--SFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRL 85 (800)
Q Consensus 15 TLFVGNLP~nVTEEDLrelFSqF----G~VksVrVI-RdTGR--GFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrV 85 (800)
-|-..+||+++++.++.++|..- |....+-++ +..|| |=|||.|.. +++|+.|+.. |...|+-|.|++
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~--ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFAC--EEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecC--HHHHHHHHHH-HHHHHhHHHHHH
Confidence 45678999999999999999642 345566556 32454 999999998 9999999974 333444444443
No 154
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=76.17 E-value=1.2 Score=53.00 Aligned_cols=68 Identities=15% Similarity=0.231 Sum_probs=60.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEe
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLER 87 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~ 87 (800)
..++||||+.+.+..+-++.+...+|-|.++..+. |||++|.. ......|+..+.-..++|..+.+..
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~--~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLK--HIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhh--HHHHHHHHHHhcccCCCcchhhccc
Confidence 46899999999999999999999999998775444 99999997 9999999999999999998887654
No 155
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=75.65 E-value=5.6 Score=40.31 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=48.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhc-CCce---eEEEEe-ccC-----CCcEEEEEecCCCHHHHHHHHHhcCCcEeCC--
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSS-LGEV---KAVDIV-RTK-----GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKG-- 80 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSq-FG~V---ksVrVI-RdT-----GRGFGFVEFeS~D~EdAekAIe~LNG~eLdG-- 80 (800)
..+|-|.+||++.|++++.+.+.. ++.. ..+.-. ... .-.-|||.|.+ .+++..-+..++|+.|.+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~--~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKN--PEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESS--CHHHHHHHHHCTTEEEE-TT
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCC--HHHHHHHHHhcCCcEEECCC
Confidence 468999999999999999997777 6665 333311 111 12679999997 889999999999988853
Q ss_pred ---eEEEEEec
Q 003717 81 ---GRLRLERA 88 (800)
Q Consensus 81 ---R~LrVe~A 88 (800)
.+..|++|
T Consensus 85 g~~~~~~VE~A 95 (176)
T PF03467_consen 85 GNEYPAVVEFA 95 (176)
T ss_dssp S-EEEEEEEE-
T ss_pred CCCcceeEEEc
Confidence 23455555
No 156
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=75.29 E-value=13 Score=34.67 Aligned_cols=53 Identities=13% Similarity=0.293 Sum_probs=39.3
Q ss_pred EEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcC
Q 003717 15 RIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYN 74 (800)
Q Consensus 15 TLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LN 74 (800)
-.||+ .|......||.++|+.||.| .|.++.++ -|||.... .+.|..|+..+.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT---SAfV~l~~--r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT---SAFVALHN--RDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT---EEEEEECC--CHHHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC---cEEEEeec--HHHHHHHHHHhc
Confidence 34454 99999999999999999997 46676554 58999997 888888888775
No 157
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=73.52 E-value=2.3 Score=41.08 Aligned_cols=63 Identities=10% Similarity=0.177 Sum_probs=48.2
Q ss_pred cCCCCCCCCCcchhhcccccCccceeeeccCCCCCcc-cccccccCCCCCcccccccchhhhhhhhccCccccC
Q 003717 125 RLDTPKKLLDKDKKLNIFFPRLRKVKTLPFCGTGKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHP 197 (800)
Q Consensus 125 is~~Lkksvdesd~LreyFskyGKVKsVp~pgTGK~K-YGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~ 197 (800)
....|+..++. +..-.+|++||.|.-+|.-.+-..+ =+| |-+.++.+|..|.+-|+|.+.++.
T Consensus 22 yirNLp~~ITs-eemydlFGkyg~IrQIRiG~~k~TrGTAF---------VVYedi~dAk~A~dhlsg~n~~~r 85 (124)
T KOG0114|consen 22 YIRNLPFKITS-EEMYDLFGKYGTIRQIRIGNTKETRGTAF---------VVYEDIFDAKKACDHLSGYNVDNR 85 (124)
T ss_pred EEecCCccccH-HHHHHHhhcccceEEEEecCccCcCceEE---------EEehHhhhHHHHHHHhcccccCCc
Confidence 33446777766 8899999999999888775433333 344 778899999999999999998874
No 158
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=72.05 E-value=14 Score=32.19 Aligned_cols=55 Identities=13% Similarity=0.250 Sum_probs=42.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcC---CceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhc
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSL---GEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTY 73 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqF---G~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~L 73 (800)
...|+|.|+. +++.++++.+|..| .....+.++.++. |=|.|.+ ...|.+|+..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS---cNvvf~d--~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTS---CNVVFKD--EETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCc---EEEEECC--HHHHHHHHHcC
Confidence 3579999995 47888999999998 2245788886653 4688886 99999998764
No 159
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.14 E-value=2.8 Score=48.34 Aligned_cols=87 Identities=7% Similarity=-0.115 Sum_probs=72.1
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEecc----CCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEecc
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT----KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAK 89 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRd----TGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AK 89 (800)
++.|+..|+..+.+++|.=+|..||-|..+..-+. -+.-.+||+... .++..||..+....+.|..+++..|.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~---~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK---ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec---cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 46788889999999999999999999987766532 124588999884 88999999888888999999999999
Q ss_pred chhhHHHhhhHHHH
Q 003717 90 EHYLARLKREWAED 103 (800)
Q Consensus 90 pr~~~RlkrEraq~ 103 (800)
..+..|.++++...
T Consensus 81 ~s~~~r~k~~~~~~ 94 (572)
T KOG4365|consen 81 SSSEKRSKNPISRP 94 (572)
T ss_pred hhhhhhhcCccccc
Confidence 99999988776554
No 160
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=70.25 E-value=2.4 Score=43.87 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=40.4
Q ss_pred CCCCCCcchhhcccccCccceeeeccCCCCCcccccccccCCCCCcccccccchhhhhhhhccCccccC
Q 003717 129 PKKLLDKDKKLNIFFPRLRKVKTLPFCGTGKHKYSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHP 197 (800)
Q Consensus 129 Lkksvdesd~LreyFskyGKVKsVp~pgTGK~KYGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~ 197 (800)
|...+.. .+|...|..||.+..|=..- ..+.|+| |.|-+.-+|..|..+|+|..||-.
T Consensus 18 L~~~a~k-~eLE~~F~~yG~lrsvWvAr-nPPGfAF---------VEFed~RDA~DAvr~LDG~~~cG~ 75 (195)
T KOG0107|consen 18 LGSRATK-RELERAFSKYGPLRSVWVAR-NPPGFAF---------VEFEDPRDAEDAVRYLDGKDICGS 75 (195)
T ss_pred CCCCcch-HHHHHHHHhcCcceeEEEee-cCCCceE---------EeccCcccHHHHHhhcCCccccCc
Confidence 4555545 78999999999876542111 2234666 677777788888888899888864
No 161
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=65.16 E-value=14 Score=37.61 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=54.7
Q ss_pred CCcEEEEeCCCCCCCH-HHH---HHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEe
Q 003717 12 EQTRIYVGGLGEKVTD-DDL---AKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLER 87 (800)
Q Consensus 12 qsrTLFVGNLP~nVTE-EDL---relFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~ 87 (800)
...+|.|.=|..++.. +|| ...++.||+|.+|.. .||--|.|.|.+ ...|-+|+.++.. ..-|..+.+.|
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~---cGrqsavVvF~d--~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL---CGRQSAVVVFKD--ITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee---cCCceEEEEehh--hHHHHHHHHhhcC-CCCCceEEeec
Confidence 4568888877666543 444 456778999999865 466689999995 9999999999876 56678888877
Q ss_pred cc
Q 003717 88 AK 89 (800)
Q Consensus 88 AK 89 (800)
-.
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 43
No 162
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=62.94 E-value=4.8 Score=31.37 Aligned_cols=56 Identities=23% Similarity=0.382 Sum_probs=36.6
Q ss_pred CCCCCCcchhhcccccCccceeeeccCC--CCCc-ccccccccCCCCCcccccccchhhhhhhhccCcc
Q 003717 129 PKKLLDKDKKLNIFFPRLRKVKTLPFCG--TGKH-KYSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQI 194 (800)
Q Consensus 129 Lkksvdesd~LreyFskyGKVKsVp~pg--TGK~-KYGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i 194 (800)
++..++. +.++.+|..||.|..+.... .++. .|+| +.|-+.+++..|++.++|..+
T Consensus 7 l~~~~~~-~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~---------v~f~s~~~a~~a~~~~~~~~~ 65 (74)
T cd00590 7 LPPDVTE-EDLRELFSKFGKVESVRIVRDKDTKSKGFAF---------VEFEDEEDAEKALEALNGKEL 65 (74)
T ss_pred CCCccCH-HHHHHHHHhcCCEEEEEEeeCCCCCcceEEE---------EEECCHHHHHHHHHHhCCCeE
Confidence 3444544 88999999999876543332 1122 2444 788888888888887776653
No 163
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=61.00 E-value=2.5 Score=49.57 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=44.4
Q ss_pred CCCCCCcchhhcccccCccceeeeccCCCCCcccccccccCCCCCcccccccchhhhhhhhccCccccC
Q 003717 129 PKKLLDKDKKLNIFFPRLRKVKTLPFCGTGKHKYSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHP 197 (800)
Q Consensus 129 Lkksvdesd~LreyFskyGKVKsVp~pgTGK~KYGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~ 197 (800)
|+..++. ++|+..|+.||.|+.++.--.-++ ..| |+|.|+-+|.+|+.++|+.++-.-
T Consensus 83 l~~~Vsn-~~L~~~f~~yGeir~ir~t~~~~~-~~~---------v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 83 LPRSVSN-DTLLRIFGAYGEIREIRETPNKRG-IVF---------VEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred cCCcCCH-HHHHHHHHhhcchhhhhcccccCc-eEE---------EEEeehHhHHHHHHHHHHHHhhhh
Confidence 4556655 899999999999998654321111 233 899999999999999999998653
No 164
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=59.92 E-value=46 Score=31.81 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=49.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCC-ceeEEEEeccC--CCcEEEEEecCCCHHHHHHHHHhcCCcEeC
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLG-EVKAVDIVRTK--GRSFGYVDFFPSSHKSLSKLFSTYNGCVWK 79 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG-~VksVrVIRdT--GRGFGFVEFeS~D~EdAekAIe~LNG~eLd 79 (800)
..-+.+...|+.++.++|..+.+.+- .|..++|+++. +|=...+.|.+ ..+|..-...+||..+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~--~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRD--QESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECC--HHHHHHHHHHhCCCccC
Confidence 44556666777777788876666664 47778888763 35678899997 99999999999999885
No 165
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=58.89 E-value=15 Score=40.93 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=48.6
Q ss_pred EEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCe-EEEEEecc
Q 003717 16 IYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGG-RLRLERAK 89 (800)
Q Consensus 16 LFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR-~LrVe~AK 89 (800)
|-|-+++..-. ..|..+|++||.|+..... ..-.+-+|.|.+ ..+|.+||. .||..|+|. .|-|..+.
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYss--r~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSS--RTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCceEEEEecc--hhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 34446655543 3566789999999876443 233599999998 999999997 589999885 44555543
No 166
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=56.50 E-value=6.7 Score=48.31 Aligned_cols=73 Identities=21% Similarity=0.200 Sum_probs=61.3
Q ss_pred EEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEe--CCeEEEEEeccch
Q 003717 15 RIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVW--KGGRLRLERAKEH 91 (800)
Q Consensus 15 TLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eL--dGR~LrVe~AKpr 91 (800)
+.++-|.+-+.+...|..+|.+||.|.++..+| +-..+.|+|.. .+.|..|..+++|.++ -|-+.+|-+|+.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr--~~N~alvs~~s--~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLR--DLNMALVSFSS--VESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecc--cccchhhhhHH--HHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 455667777888899999999999999987765 33478999998 9999999999999877 4889999998754
No 167
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=55.32 E-value=8 Score=45.07 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=48.9
Q ss_pred CHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccchh
Q 003717 26 TDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEHY 92 (800)
Q Consensus 26 TEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKpr~ 92 (800)
+..+|...|.+||.|..|.|-.. -=.|.|+|.+ ..+|-.|. ...+..|++|.|+|-|.++..
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t--~aeag~a~-~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKT--RAEAGEAY-ASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hHhhhhhhhhhcCccccccccCc--hhhheeeeec--cccccchh-ccccceecCceeEEEEecCCc
Confidence 45789999999999999987421 2358899997 77775554 368999999999999988753
No 168
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=54.28 E-value=44 Score=29.47 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=42.5
Q ss_pred CCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEE
Q 003717 24 KVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRL 85 (800)
Q Consensus 24 nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrV 85 (800)
.++-++++..+..|+-. .|.. ...|| ||.|.+ ..+|++|....+|..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~I~~---d~tGf-YIvF~~--~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-RIRD---DRTGF-YIVFND--SKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-eEEe---cCCEE-EEEECC--hHHHHHHHHhcCCCEEEEEEEEe
Confidence 56778999999999652 2222 12366 899997 89999999999999988877654
No 169
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=53.25 E-value=20 Score=42.76 Aligned_cols=66 Identities=9% Similarity=0.195 Sum_probs=49.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhc--CCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCC--cEeCCeEE
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSS--LGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNG--CVWKGGRL 83 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSq--FG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG--~eLdGR~L 83 (800)
.+-|.+.-||.++-.++++.+|.. +-.+++|.+.... -=||+|++ ..||+.|...|.- .+|.|++|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~---nWyITfes--d~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND---NWYITFES--DTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC---ceEEEeec--chhHHHHHHHHHHHHHhhcCcch
Confidence 345778899999999999999975 7788888875322 23899998 8999999876643 45566655
No 170
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=44.21 E-value=9.5 Score=45.43 Aligned_cols=50 Identities=20% Similarity=0.365 Sum_probs=36.7
Q ss_pred hhhcccccCccce---eeeccCCC-CCcccccccccCCCCCcccccccchhhhhhhhccCccc
Q 003717 137 KKLNIFFPRLRKV---KTLPFCGT-GKHKYSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIH 195 (800)
Q Consensus 137 d~LreyFskyGKV---KsVp~pgT-GK~KYGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~ 195 (800)
.+|+.+|++||+| ++|+..-+ |..=||| |.+++-+++...++-+....+|
T Consensus 420 tDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGf---------VTMSts~eAtkCI~hLHrTELH 473 (940)
T KOG4661|consen 420 TDLKNLFSKYGKVVGAKVVTNARSPGARCYGF---------VTMSTSAEATKCIEHLHRTELH 473 (940)
T ss_pred hHHHHHHHHhcceeceeeeecCCCCCcceeEE---------EEecchHHHHHHHHHhhhhhhc
Confidence 7899999999997 45554433 3334899 8999999999988766544443
No 171
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.07 E-value=1.2e+02 Score=36.66 Aligned_cols=71 Identities=21% Similarity=0.372 Sum_probs=54.7
Q ss_pred CCcEEEEeCCCCC-CCHHHHHHhhhcC----CceeEEEEecc------------CC------------------------
Q 003717 12 EQTRIYVGGLGEK-VTDDDLAKVFSSL----GEVKAVDIVRT------------KG------------------------ 50 (800)
Q Consensus 12 qsrTLFVGNLP~n-VTEEDLrelFSqF----G~VksVrVIRd------------TG------------------------ 50 (800)
.+++|-|-||.|. +...+|.-+|..| |.|.+|.|... .|
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4689999999997 7789999988876 58888877510 01
Q ss_pred ------C---------cEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEE
Q 003717 51 ------R---------SFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLR 84 (800)
Q Consensus 51 ------R---------GFGFVEFeS~D~EdAekAIe~LNG~eLdGR~Lr 84 (800)
| =||.|+|.+ .+.|.+.....+|.+|...-..
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDs--i~tA~~vYe~CDG~EfEsS~~~ 299 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDS--IETAKAVYEECDGIEFESSANK 299 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecC--chHHHHHHHhcCcceeccccce
Confidence 1 178899997 9999999999999998744333
No 172
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=32.48 E-value=9.8 Score=43.58 Aligned_cols=75 Identities=19% Similarity=0.072 Sum_probs=54.1
Q ss_pred cEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEeccch
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKEH 91 (800)
Q Consensus 14 rTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~AKpr 91 (800)
++++|++|+..+...++-++|..+|.|...++......-+|-|.|.. ......|+. ++|..+.-+-..+..-+|+
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~--qts~~halr-~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRK--QTSSKHALR-SHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhh--hhhHHHHHH-hcchhhhhhhhhhhhcCcc
Confidence 68999999999999999999999999988877533334677799985 555566654 5566665433333333444
No 173
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=31.63 E-value=32 Score=42.17 Aligned_cols=69 Identities=13% Similarity=0.163 Sum_probs=50.0
Q ss_pred CCCCCCcccCCCCCCCCCcchhhcccccCccceeeecc--CC------CCCcccccccccCCCCCcccccccchhhhhhh
Q 003717 117 APDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPF--CG------TGKHKYSFQRVEAPPLPKYFCDCEEHSAAFHA 188 (800)
Q Consensus 117 d~~~~kl~is~~Lkksvdesd~LreyFskyGKVKsVp~--pg------TGK~KYGF~~ve~Ps~pV~F~sfEea~aA~eA 188 (800)
+++.+++..++ +...+++ +.|...|++||-|-++.. +- .++. -|| |+|.+.-++.+|+..
T Consensus 171 DP~TTNlyv~N-lnpsv~E-~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~-cgf---------vafmnR~D~era~k~ 238 (877)
T KOG0151|consen 171 DPQTTNLYVGN-LNPSVDE-NFLLRTFGRFGPLASVKIMWPRTEEEKRRERN-CGF---------VAFMNRADAERALKE 238 (877)
T ss_pred CCcccceeeec-CCccccH-HHHHHHhcccCcccceeeecccchhhhccccc-cce---------eeehhhhhHHHHHHH
Confidence 55556666554 5667766 888899999998654432 21 2222 466 899999999999999
Q ss_pred hccCccccC
Q 003717 189 AEGKQIHHP 197 (800)
Q Consensus 189 mNG~~i~n~ 197 (800)
|+|+++...
T Consensus 239 lqg~iv~~~ 247 (877)
T KOG0151|consen 239 LQGIIVMEY 247 (877)
T ss_pred hcceeeeee
Confidence 999998774
No 174
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=27.65 E-value=1.1e+02 Score=34.50 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=36.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEeccCCCcEEEEEecC
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFP 60 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVIRdTGRGFGFVEFeS 60 (800)
..-||++||+.++.-.||+..+.+.|.+- ..+-...++|-||..|.+
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k~flh~~~ 376 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFGKCFLHFGN 376 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCcceeEecCC
Confidence 34699999999999999999998887642 233334457889999975
No 175
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=27.30 E-value=48 Score=36.89 Aligned_cols=95 Identities=22% Similarity=0.488 Sum_probs=0.0
Q ss_pred CcEEEEeCCCCC------------CCHHHHHHhhhcCCceeEEEEe-----------ccCC---CcEEE---------EE
Q 003717 13 QTRIYVGGLGEK------------VTDDDLAKVFSSLGEVKAVDIV-----------RTKG---RSFGY---------VD 57 (800)
Q Consensus 13 srTLFVGNLP~n------------VTEEDLrelFSqFG~VksVrVI-----------RdTG---RGFGF---------VE 57 (800)
..+||+.+||-. -+++-|+..|..||.|..|.|+ +.+| .|||| |.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Q ss_pred ecCCCHHHHHHHHHhcCCcEe----CCe----EEEEEeccchhhHHHhhhHHHHhhhhCC
Q 003717 58 FFPSSHKSLSKLFSTYNGCVW----KGG----RLRLERAKEHYLARLKREWAEDDAQLVN 109 (800)
Q Consensus 58 FeS~D~EdAekAIe~LNG~eL----dGR----~LrVe~AKpr~~~RlkrEraq~rak~~~ 109 (800)
|-. ......|+..|.|..| +|+ .++|++.+.+.+....-...........
T Consensus 229 fme--ykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrhlsevqiakraeerrqie 286 (445)
T KOG2891|consen 229 FME--YKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRHLSEVQIAKRAEERRQIE 286 (445)
T ss_pred HHH--HHhHHHHHHHHhcchHHhhcCCcccccccccccchhhhhhHHHHHHHHHHHhhhh
No 176
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.72 E-value=1.3e+02 Score=35.50 Aligned_cols=66 Identities=18% Similarity=0.317 Sum_probs=56.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCC-ceeEEEEeccCC--CcEEEEEecCCCHHHHHHHHHhcCCcEeCC
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLG-EVKAVDIVRTKG--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKG 80 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG-~VksVrVIRdTG--RGFGFVEFeS~D~EdAekAIe~LNG~eLdG 80 (800)
.+.|+|-.+|-.++--||-.|...|= .|.+++++|+.. |=...+.|.+ .++|..-...+||..|.-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~--q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRD--QADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEecc--chhHHHHHHHcCCCcCCC
Confidence 67899999999999999999998764 488999998532 4467799996 999999999999998863
No 177
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.66 E-value=79 Score=36.34 Aligned_cols=62 Identities=23% Similarity=0.329 Sum_probs=45.7
Q ss_pred cCCCCCCCCCcchhhcccccCcccee---eeccCCCCCc-ccccccccCCCCCcccccccchhhhhhhhccCcccc
Q 003717 125 RLDTPKKLLDKDKKLNIFFPRLRKVK---TLPFCGTGKH-KYSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHH 196 (800)
Q Consensus 125 is~~Lkksvdesd~LreyFskyGKVK---sVp~pgTGK~-KYGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n 196 (800)
+..+|.+-. ++++|.++|++||+|. +|++..||-. .|+| |.|-.-+.-.+|+=.|...-|-.
T Consensus 243 FVCKLNPVT-tDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaF---------iEFen~escE~AyFKMdNvLIDD 308 (479)
T KOG0415|consen 243 FVCKLNPVT-TDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAF---------IEFENKESCEQAYFKMDNVLIDD 308 (479)
T ss_pred EEEecCCcc-cccchhhHHhhcccceeeeEEecccccchhheee---------eeecchhhHHHHHhhhcceeecc
Confidence 334444444 4489999999999965 6899999977 5999 67777777778888887665544
No 178
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=24.39 E-value=75 Score=36.30 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=32.8
Q ss_pred hcccccCcccee-eeccCCC------CCcccccccccCCCCCcccccccchhhhhhhhccCcc
Q 003717 139 LNIFFPRLRKVK-TLPFCGT------GKHKYSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQI 194 (800)
Q Consensus 139 LreyFskyGKVK-sVp~pgT------GK~KYGF~~ve~Ps~pV~F~sfEea~aA~eAmNG~~i 194 (800)
-.+||++||+|+ ++-.+-+ .-| ||- |+.|..-|++..++.++-|-++
T Consensus 137 ~~eyFGQyGkI~KIvvNkkt~s~nst~~h-~gv--------YITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 137 RHEYFGQYGKIKKIVVNKKTSSLNSTASH-AGV--------YITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred chhhhhhccceeEEEeccccccccccccc-ceE--------EEEecchHHHHHHHHHhccccc
Confidence 357999999975 3322221 112 444 7999999999999999877655
No 179
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=23.65 E-value=4.6 Score=46.49 Aligned_cols=74 Identities=12% Similarity=0.204 Sum_probs=61.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhhcCCceeEEEEe-ccCCCcEEEEEecCCCHHHHHHHHHhcCCcEeCCeEEEEEec
Q 003717 13 QTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIV-RTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 13 srTLFVGNLP~nVTEEDLrelFSqFG~VksVrVI-RdTGRGFGFVEFeS~D~EdAekAIe~LNG~eLdGR~LrVe~A 88 (800)
.+++-|.|+|....++-|..+..+||.|..|..+ .+.-...--|+|.. .+.+..||..++|..+...-++|.+-
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~--~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSA--QQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHH--HHHHHHHHHhhcchHhhhhhhhcccC
Confidence 4678899999999999999999999999999765 33333344477886 89999999999999999998888764
No 180
>smart00427 H2B Histone H2B.
Probab=21.55 E-value=70 Score=29.99 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=19.5
Q ss_pred cchHHHHHHhHHHHHHhhhhc
Q 003717 214 VINEEELNLMNSVMNKLFERE 234 (800)
Q Consensus 214 g~~~~e~n~MnsVmnklfeke 234 (800)
|+..+.+++||+.+|.+|++=
T Consensus 19 giS~kam~imnSfvnDiferI 39 (89)
T smart00427 19 GISSKAMSIMNSFVNDIFERI 39 (89)
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999974
Done!