Query 003717
Match_columns 800
No_of_seqs 251 out of 1634
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 18:25:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003717.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1764-1768//hhsearch_pdb/003717hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 1.0 1 1 163.3 10.4 162 12-210 14-181 (213)
2 3tyt_A Heterogeneous nuclear r 1.0 1 1 160.1 10.5 171 12-198 3-194 (205)
3 1l3k_A Heterogeneous nuclear r 1.0 1 1 158.8 12.4 176 1-211 1-184 (196)
4 3sde_A Paraspeckle component 1 1.0 1 1 156.7 11.9 158 8-210 17-179 (261)
5 3pgw_A U1-A; protein-RNA compl 1.0 1 1 156.3 12.8 176 6-195 2-270 (282)
6 2qfj_A FBP-interacting repress 1.0 1 1 156.1 12.1 172 10-209 25-204 (216)
7 2adc_A Polypyrimidine tract-bi 1.0 1 1 148.8 8.7 171 10-195 31-215 (229)
8 3md3_A Nuclear and cytoplasmic 1.0 1 1 148.7 12.1 148 14-195 1-155 (166)
9 3nmr_A Cugbp ELAV-like family 1.0 1 1 148.5 10.4 158 12-204 2-171 (175)
10 1fje_B Nucleolin RBD12, protei 1.0 1 1 148.3 6.4 157 9-205 9-169 (175)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=1.00 E-value=1 Score=163.28 Aligned_cols=162 Identities=20% Similarity=0.259 Sum_probs=128.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECC--CC--CCEEEEEECCCCHHHHHHHHHHCCCCEECCEEEEEEE
Q ss_conf 7849999079988998899985303896249999656--99--7679999368998899999984599476793779974
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--KG--RSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLER 87 (800)
Q Consensus 12 q~rtLFVGNLp~sVTEEdLrelFskFGeV~sVrVIRd--TG--RGFGFVeFaS~D~EDAeKAIeeLNG~eLdGRkLkVe~ 87 (800)
..++|||||||+.+++++|+++|++||.|.+|+++++ ++ +|||||+|.+ .++|.+|+..+|+..+.|+.|++.+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~--~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ--PADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS--HHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCEECC--HHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 97589993999878799999999861987999873146888756646100089--9999999998402102783320023
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCC-CCCCCC-CCCC
Q ss_conf 24013688765488886521799998988999987334799888888520000114676423660158-999721-1113
Q 003717 88 AKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPFC-GTGKHK-YSFQ 165 (800)
Q Consensus 88 AkPk~l~R~krErkeakakk~~sp~sDsvd~q~pkl~is~~Lk~svsesd~LreyFskyGKVKsVp~k-gTGK~K-YGFg 165 (800)
+........ . ...++++.+ |+..+++ ++|+.+|..||.|..++.. +.+..+ |||
T Consensus 92 ~~~~~~~~~------~---------------~~~~l~v~n-l~~~~t~-~~l~~~F~~~G~i~~~~i~~d~~~~~g~~f- 147 (213)
T 4f02_A 92 SQRDPSLRK------S---------------GVGNIFIKN-LDKSIDN-KALYDTFSAFGNILSCKVVCDENGSKGYGF- 147 (213)
T ss_dssp CCCCTHHHH------H---------------CTTEEEEES-CCTTCCH-HHHHHHHGGGSCEEEEEEEEETTEEEEEEE-
T ss_pred CCCCCCCCC------C---------------CCCCCEECC-CCCCCHH-HHHHHHHHHCCCEEEEEEECCCCCCCEEEE-
T ss_conf 332110101------3---------------455534777-6444279-999999856699679976325898842899-
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHC
Q ss_conf 336899996434410212354641468102689986321021102
Q 003717 166 RVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHPAAGQEEIHDMEEL 210 (800)
Q Consensus 166 ~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n~~q~~i~~~ee~ 210 (800)
|.|.+.+++..|++.|||..+ ++....|..+.++
T Consensus 148 --------V~f~~~~~a~~Ai~~lng~~~---~g~~i~V~~a~~~ 181 (213)
T 4f02_A 148 --------VHFETQEAAERAIEKMNGMLL---NDRKVFVGRFKSR 181 (213)
T ss_dssp --------EEESSHHHHHHHHHHHTTCEE---TTEECEEEECCCH
T ss_pred --------EEECCHHHHHHHHHHHCCCEE---CCEEEEEEECCCC
T ss_conf --------986889999999998199988---9988899975787
No 2
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=1.00 E-value=1 Score=160.11 Aligned_cols=171 Identities=11% Similarity=0.150 Sum_probs=124.0
Q ss_pred CCCEEEEECCC-CCCCHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHCCCCEECCEEEEEEECCC
Q ss_conf 78499990799-88998899985303896249999656997679999368998899999984599476793779974240
Q 003717 12 EQTRIYVGGLG-EKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKE 90 (800)
Q Consensus 12 q~rtLFVGNLp-~sVTEEdLrelFskFGeV~sVrVIRdTGRGFGFVeFaS~D~EDAeKAIeeLNG~eLdGRkLkVe~AkP 90 (800)
+..+|||+||+ +.+++++|+.+|++||.|.+|+++++ .||||||+|.+ .++|.+|+..|||..+.||+|+|.+|+.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~--~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMAD--GYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESS--HHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEECC-CCCEEEEEECC--HHHHHHHHHHHCCCEECCCEEEEEECCC
T ss_conf 88889994898011999999999983598589999508-99889999898--9999999998689977896589998158
Q ss_pred HHHHHHHHHH-HHHHH----HHC-CCCC----------CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCE--EEE
Q ss_conf 1368876548-88865----217-9999----------8988999987334799888888520000114676423--660
Q 003717 91 HYLARLKREW-AEDDA----QLV-NPPV----------TDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKV--KTL 152 (800)
Q Consensus 91 k~l~R~krEr-keaka----kk~-~sp~----------sDsvd~q~pkl~is~~Lk~svsesd~LreyFskyGKV--KsV 152 (800)
..... ++. ..... +.. ..+. ..........+++. .|+..+++ ++|+.+|.+||.| ..+
T Consensus 80 ~~~~p--~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~-NLp~~~t~-~~L~~~F~~~G~v~~~~v 155 (205)
T 3tyt_A 80 PAIMP--GQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFF-NAPLEVTE-ENFFEICDELGVKRPTSV 155 (205)
T ss_dssp SCCCC--CSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEE-EECTTCCH-HHHHHHHHHHTCCCCSEE
T ss_pred CCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-CCCCCCCH-HHHHHHHHHCCCCCEEEE
T ss_conf 76578--765566667844334677754464675433335568985467773-79987899-999999986498241799
Q ss_pred CC-CCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 15-899972-11113336899996434410212354641468102689
Q 003717 153 PF-CGTGKH-KYSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHPA 198 (800)
Q Consensus 153 p~-kgTGK~-KYGFg~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n 198 (800)
.. ++.|+. .||| |.|.+.+++..|+..|||..+...+
T Consensus 156 ~~~~~~~~~~g~gf---------V~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 156 KVFSGKSERSSSGL---------LEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp EECSCCSSSSEEEE---------EECSSHHHHHHHHHHHTTCEECCSS
T ss_pred EEECCCCCCCEEEE---------EEECCHHHHHHHHHHHCCCCCCCCC
T ss_conf 99738998760799---------9969999999999986788826988
No 3
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=1.00 E-value=1 Score=158.85 Aligned_cols=176 Identities=19% Similarity=0.276 Sum_probs=137.8
Q ss_pred CCCCCCHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECC--CC--CCEEEEEECCCCHHHHHHHHHHCCCC
Q ss_conf 974210010057849999079988998899985303896249999656--99--76799993689988999999845994
Q 003717 1 MEKKEAEAEVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--KG--RSFGYVDFFPSSHKSLSKLFSTYNGC 76 (800)
Q Consensus 1 MekkeA~~Ev~q~rtLFVGNLp~sVTEEdLrelFskFGeV~sVrVIRd--TG--RGFGFVeFaS~D~EDAeKAIeeLNG~ 76 (800)
|++...+.+....++|||+|||+.+++++|+++|+.||.|..|.++++ ++ +|||||+|.+ .++|.+|+.. ++.
T Consensus 1 ms~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~--~~~A~~A~~~-~~~ 77 (196)
T 1l3k_A 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT--VEEVDAAMNA-RPH 77 (196)
T ss_dssp -------CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS--HHHHHHHHHT-CSC
T ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEECC--HHHHHHHHHC-CCC
T ss_conf 9855688887778789990889989999999999737987999999729999836359999688--9999999823-997
Q ss_pred EECCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEE---EEC
Q ss_conf 76793779974240136887654888865217999989889999873347998888885200001146764236---601
Q 003717 77 VWKGGRLRLERAKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVK---TLP 153 (800)
Q Consensus 77 eLdGRkLkVe~AkPk~l~R~krErkeakakk~~sp~sDsvd~q~pkl~is~~Lk~svsesd~LreyFskyGKVK---sVp 153 (800)
.+.|+.|.|.++.++..... . ........+++.+ |+..+++ ++|+.+|..||.|. +++
T Consensus 78 ~~~g~~l~v~~~~~~~~~~~------~-----------~~~~~~~~l~V~n-Lp~~~t~-~~l~~~F~~~G~i~~v~i~~ 138 (196)
T 1l3k_A 78 KVDGRVVEPKRAVSREDSQR------P-----------GAHLTVKKIFVGG-IKEDTEE-HHLRDYFEQYGKIEVIEIMT 138 (196)
T ss_dssp EETTEECEEEECCC----------------------------CCSEEEEEC-CTTTCCH-HHHHHHHTTTSCEEEEEEEE
T ss_pred EECCEEEEEECCCCCCCCCC------C-----------CCCCCCCEEEEEC-CCCCCCH-HHHHHHHHCCCCEEEEEEEE
T ss_conf 79988850000557654456------5-----------6678732699807-9987899-99999985278767999751
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHCC
Q ss_conf 58999721-11133368999964344102123546414681026899863210211027
Q 003717 154 FCGTGKHK-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHPAAGQEEIHDMEELG 211 (800)
Q Consensus 154 ~kgTGK~K-YGFg~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n~~q~~i~~~ee~~ 211 (800)
++.+|+++ |+| |.|.+.+++..|+.. +|. .++|..+.|..+.++.
T Consensus 139 ~~~~g~~~g~af---------V~F~~~~~A~~A~~~-~~~---~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 139 DRGSGKKRGFAF---------VTFDDHDSVDKIVIQ-KYH---TVNGHNCEVRKALSKQ 184 (196)
T ss_dssp CTTTCCEEEEEE---------EEESSHHHHHHHHHC-SCC---EETTEECEEEECC---
T ss_pred CCCCCCCCCEEE---------EEECCHHHHHHHHHH-CCC---EECCEEEEEEECCCHH
T ss_conf 488897064599---------997879999999972-782---8898799998647966
No 4
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=1.00 E-value=1 Score=156.71 Aligned_cols=158 Identities=20% Similarity=0.322 Sum_probs=127.9
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHCCCCEECCEEEEEEE
Q ss_conf 10057849999079988998899985303896249999656997679999368998899999984599476793779974
Q 003717 8 AEVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLER 87 (800)
Q Consensus 8 ~Ev~q~rtLFVGNLp~sVTEEdLrelFskFGeV~sVrVIRdTGRGFGFVeFaS~D~EDAeKAIeeLNG~eLdGRkLkVe~ 87 (800)
......++|||||||+.+++++|+.+|+.||.|..|.+++ .+|||||+|.+ .++|.+|+..|||..+.|+.|+|.+
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~--~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLES--RTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSS--HHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEC--CCCEEEEEECC--HHHHHHHHHHCCCCEECCCEEEEEE
T ss_conf 7889988899979999999999999998559979999837--89679999799--9999999987599698782457621
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEE---ECCCCCCCCC-CC
Q ss_conf 2401368876548888652179999898899998733479988888852000011467642366---0158999721-11
Q 003717 88 AKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKT---LPFCGTGKHK-YS 163 (800)
Q Consensus 88 AkPk~l~R~krErkeakakk~~sp~sDsvd~q~pkl~is~~Lk~svsesd~LreyFskyGKVKs---Vp~kgTGK~K-YG 163 (800)
+.+. ..+++.+ |+..+++ ++|+.+|..||.|.. +++ .+|+++ ||
T Consensus 93 a~~~-----------------------------~~l~v~n-l~~~~t~-~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~a 140 (261)
T 3sde_A 93 ATHG-----------------------------AALTVKN-LSPVVSN-ELLEQAFSQFGPVEKAVVVVD-DRGRATGKG 140 (261)
T ss_dssp CCCS-----------------------------SEEEEES-CCTTCCH-HHHHHHHGGGSCEEEEEEEEE-TTSCEEEEE
T ss_pred CCCC-----------------------------CCCCCCC-CCCCCCH-HHHHHHHHHCCCEEEEEEEEC-CCCCCCCEE
T ss_conf 1467-----------------------------7630158-9997899-999999974599689982137-899958679
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHH-CCCCCCCCCCCCCCCCHHHHC
Q ss_conf 13336899996434410212354641-468102689986321021102
Q 003717 164 FQRVEAPPLPKYFCDCEEHSAAFHAA-EGKQIHHPAAGQEEIHDMEEL 210 (800)
Q Consensus 164 Fg~ve~Ps~pV~F~sfEea~aA~eAm-NG~~i~n~n~~q~~i~~~ee~ 210 (800)
| |.|.+.+++..|+..+ +|.++....+..+.|.-+.+.
T Consensus 141 f---------V~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 141 F---------VEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp E---------EEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred E---------EEECCHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCC
T ss_conf 9---------99588999999999865986874589956898625556
No 5
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=1.00 E-value=1 Score=156.27 Aligned_cols=176 Identities=22% Similarity=0.286 Sum_probs=124.8
Q ss_pred CHHHCCCCCEEEEECCCCCCCHHHHH----HHHHCCCCEEEEEEECC-CCCCEEEEEECCCCHHHHHHHHHHCCCCEECC
Q ss_conf 00100578499990799889988999----85303896249999656-99767999936899889999998459947679
Q 003717 6 AEAEVEEQTRIYVGGLGEKVTDDDLA----KVFSSLGEVKAVDIVRT-KGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKG 80 (800)
Q Consensus 6 A~~Ev~q~rtLFVGNLp~sVTEEdLr----elFskFGeV~sVrVIRd-TGRGFGFVeFaS~D~EDAeKAIeeLNG~eLdG 80 (800)
+..+.+..++|||+||++.+++++|+ ++|+.||.|..|.+++. ..||||||+|.+ .++|.+|+..|||..|.|
T Consensus 2 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~--~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 2 AVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKE--VSSATNALRSMQGFPFYD 79 (282)
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEECC--HHHHHHHHHHHCCCEECC
T ss_conf 988899987799959998889999999999997336976899976799846289999799--999999999966986179
Q ss_pred EEEEEEECCCHHHHHHHH-------HHH--HH--------HHHHCCC--CC-----------------------------
Q ss_conf 377997424013688765-------488--88--------6521799--99-----------------------------
Q 003717 81 GRLRLERAKEHYLARLKR-------EWA--ED--------DAQLVNP--PV----------------------------- 112 (800)
Q Consensus 81 RkLkVe~AkPk~l~R~kr-------Erk--ea--------kakk~~s--p~----------------------------- 112 (800)
+.|+|.+|+.+......+ ... .. ....... ..
T Consensus 80 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 80 KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred CEEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67999983268543333138844223555541102330156653136767765577899888887865456665445778
Q ss_pred ----------------------------------------CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEE
Q ss_conf ----------------------------------------8988999987334799888888520000114676423660
Q 003717 113 ----------------------------------------TDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTL 152 (800)
Q Consensus 113 ----------------------------------------sDsvd~q~pkl~is~~Lk~svsesd~LreyFskyGKVKsV 152 (800)
..........+++ +.|...+++ ++|+.+|.+||.|..+
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v-~nl~~~~~~-~~l~~~F~~~G~i~~v 237 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFL-TNLPEETNE-LMLSMLFNQFPGFKEV 237 (282)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE-ECCCCCCCH-HHHHHHHHHCCCEEEE
T ss_conf 88899999889999988655676667655557433576677667999778999-389976789-9999999856985899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 1589997211113336899996434410212354641468102
Q 003717 153 PFCGTGKHKYSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIH 195 (800)
Q Consensus 153 p~kgTGK~KYGFg~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~ 195 (800)
.+. .++..|+| |.|.+.+++..|+.++||..+.
T Consensus 238 ~~~-~~~~g~af---------V~f~~~~~A~~A~~~l~g~~~~ 270 (282)
T 3pgw_A 238 RLV-PGRHDIAF---------VEFDNEVQAGAARDALQGFKIT 270 (282)
T ss_pred EEE-CCCCCEEE---------EEECCHHHHHHHHHHCCCCEEC
T ss_conf 995-39973899---------9959999999999983896857
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=1.00 E-value=1 Score=156.11 Aligned_cols=172 Identities=16% Similarity=0.259 Sum_probs=131.4
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECC--C--CCCEEEEEECCCCHHHHHHHHHHCCCCEECCEEEEE
Q ss_conf 057849999079988998899985303896249999656--9--976799993689988999999845994767937799
Q 003717 10 VEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--K--GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRL 85 (800)
Q Consensus 10 v~q~rtLFVGNLp~sVTEEdLrelFskFGeV~sVrVIRd--T--GRGFGFVeFaS~D~EDAeKAIeeLNG~eLdGRkLkV 85 (800)
....++|||+|||+.+++++|+++|+.||.|..|.++++ + .+|||||+|.+ .++|.+|+..|||..|.|+.|+|
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~--~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEV--PEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESS--HHHHHHHHHHHSSCCCC-CCCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEECC--HHHHHHHHHHCCCCEECCEEEEE
T ss_conf 6768779997899989999999999857997899986658888637669999689--99999999874677269916898
Q ss_pred EECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEE---EECCCCCCCCC-
Q ss_conf 74240136887654888865217999989889999873347998888885200001146764236---60158999721-
Q 003717 86 ERAKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVK---TLPFCGTGKHK- 161 (800)
Q Consensus 86 e~AkPk~l~R~krErkeakakk~~sp~sDsvd~q~pkl~is~~Lk~svsesd~LreyFskyGKVK---sVp~kgTGK~K- 161 (800)
.++................ . .....+++. .|+..+++ ++|+.+|.+||.|. +++++.+|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~-~-----------~~~~~l~v~-nlp~~~t~-~~l~~~f~~~G~v~~v~i~~~~~~g~~~g 168 (216)
T 2qfj_A 103 GRPSNIGQAQPIIDQLAEE-A-----------RAFNRIYVA-SVHQDLSD-DDIKSVFEAFGKIKSATLARDPTTGKHKG 168 (216)
T ss_dssp ECCSCCGGGHHHHHHHHHH-H-----------TTSCEEEEE-CCCTTCCH-HHHHHHHTTSSCEEEEEEEECTTTCCEEE
T ss_pred ECCCCCCCCCHHHHHHHCC-C-----------CCCCEEEEE-CCCCCCCH-HHHHHHHHCCCCEEEEEEEECCCCCCCCC
T ss_conf 5688843101023433002-6-----------787579993-78975889-99999974369866899873588997575
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 111333689999643441021235464146810268998632102110
Q 003717 162 YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHPAAGQEEIHDMEE 209 (800)
Q Consensus 162 YGFg~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n~~q~~i~~~ee 209 (800)
|+| |.|.+.+++..|+..+||..+ .+....|..+.+
T Consensus 169 ~af---------V~F~~~~~A~~A~~~l~g~~~---~g~~i~V~~a~~ 204 (216)
T 2qfj_A 169 YGF---------IEYEKAQSSQDAVSSMNLFDL---GGQYLRVGKAVT 204 (216)
T ss_dssp EEE---------EEESSHHHHHHHHHHHTTCBC---SSSBCEEEECSS
T ss_pred EEE---------EEECCHHHHHHHHHHCCCCEE---CCCEEEEEEECC
T ss_conf 699---------996689999999997368772---895899998127
No 7
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=1.00 E-value=1 Score=148.79 Aligned_cols=171 Identities=17% Similarity=0.222 Sum_probs=122.3
Q ss_pred CCCCCEEEEECCCC-CCCHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHCCCCEECCEEEEEEEC
Q ss_conf 05784999907998-89988999853038962499996569976799993689988999999845994767937799742
Q 003717 10 VEEQTRIYVGGLGE-KVTDDDLAKVFSSLGEVKAVDIVRTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERA 88 (800)
Q Consensus 10 v~q~rtLFVGNLp~-sVTEEdLrelFskFGeV~sVrVIRdTGRGFGFVeFaS~D~EDAeKAIeeLNG~eLdGRkLkVe~A 88 (800)
....++|||+|||+ .+++++|+++|+.||.|..|.++++. +|||||+|.+ .++|.+|+..|||..+.|+.|+|.+|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~--~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMAD--GNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESC--HHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEECC-CCEEEEEECC--HHHHHHHHHHHCCCEECCEEEEEEEE
T ss_conf 99978899948881439999999999827986899999789-9879999799--99999999986897278857899980
Q ss_pred CCHHHHHHHHH-HHHHHHH--------HCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC-CEEEECCC
Q ss_conf 40136887654-8888652--------1799998---9889999873347998888885200001146764-23660158
Q 003717 89 KEHYLARLKRE-WAEDDAQ--------LVNPPVT---DSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLR-KVKTLPFC 155 (800)
Q Consensus 89 kPk~l~R~krE-rkeakak--------k~~sp~s---Dsvd~q~pkl~is~~Lk~svsesd~LreyFskyG-KVKsVp~k 155 (800)
.+......+.. ......+ ....+.. .........+++. .|+..+++ ++|+.+|.+|| .|..+..-
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~-nlp~~~t~-~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 108 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLS-NIPPSVSE-EDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp SCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEE-CCCTTCCH-HHHHHHHHTTSCCEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-CCCCCCCH-HHHHHHHHHCCCCEEEEEEE
T ss_conf 68654576666655430134456840024873223445678997779996-99965899-99999998759970589999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 9997211113336899996434410212354641468102
Q 003717 156 GTGKHKYSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIH 195 (800)
Q Consensus 156 gTGK~KYGFg~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~ 195 (800)
... ..|+| |.|.+.+++..|+..+||..+.
T Consensus 186 ~~~-~g~af---------V~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 186 QKD-RKMAL---------IQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp SSS-TTCEE---------EEESSHHHHHHHHHHHTTCBSS
T ss_pred ECC-CCEEE---------EEECCHHHHHHHHHHHCCCCCC
T ss_conf 789-86899---------9979899999999997787658
No 8
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=148.66 Aligned_cols=148 Identities=18% Similarity=0.297 Sum_probs=122.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCC---CCCEEEEEECCCCHHHHHHHHHHCCCCEECCEEEEEEECCC
Q ss_conf 499990799889988999853038962499996569---97679999368998899999984599476793779974240
Q 003717 14 TRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRTK---GRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRLERAKE 90 (800)
Q Consensus 14 rtLFVGNLp~sVTEEdLrelFskFGeV~sVrVIRdT---GRGFGFVeFaS~D~EDAeKAIeeLNG~eLdGRkLkVe~AkP 90 (800)
++|||+|||+.+++++|+++|++||.|.++.++++. .+|||||+|.+ .++|.+|+..|||..+.|+.|.|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~--~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQ--SHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESS--HHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEECC--HHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf 97999799986799999999986199479999989999978779999689--9999999998289745897259997577
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEE---EECCCCCCCCC-CCCCC
Q ss_conf 136887654888865217999989889999873347998888885200001146764236---60158999721-11133
Q 003717 91 HYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVK---TLPFCGTGKHK-YSFQR 166 (800)
Q Consensus 91 k~l~R~krErkeakakk~~sp~sDsvd~q~pkl~is~~Lk~svsesd~LreyFskyGKVK---sVp~kgTGK~K-YGFg~ 166 (800)
.... .......+++. .|+..+++ ++|+.+|.+||.|. .++++.+|+++ |+|
T Consensus 79 ~~~~---------------------~~~~~~~l~v~-nl~~~~t~-~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~af-- 133 (166)
T 3md3_A 79 SQQS---------------------SSDDTFNLFVG-DLNVNVDD-ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGF-- 133 (166)
T ss_dssp CCCC---------------------CCTTCEEEEEE-SCCTTCCH-HHHHHHHTTSTTEEEEEEEECTTTCCEEEEEE--
T ss_pred CCCC---------------------CCCCCCEEEEC-CCCCCCCH-HHHHHHHHCCCCEEEEEEEECCCCCCCCEEEE--
T ss_conf 7778---------------------89988669988-99987999-99999986069805799975489998660899--
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 36899996434410212354641468102
Q 003717 167 VEAPPLPKYFCDCEEHSAAFHAAEGKQIH 195 (800)
Q Consensus 167 ve~Ps~pV~F~sfEea~aA~eAmNG~~i~ 195 (800)
|.|.+.+++..|+..+||..+.
T Consensus 134 -------V~f~~~~~A~~A~~~l~g~~~~ 155 (166)
T 3md3_A 134 -------VSFTSQDDAQNAMDSMQGQDLN 155 (166)
T ss_dssp -------EEESCHHHHHHHHHHHTTCEET
T ss_pred -------EEECCHHHHHHHHHHHCCCCCC
T ss_conf -------9959999999999986799659
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=1.00 E-value=1 Score=148.48 Aligned_cols=158 Identities=13% Similarity=0.251 Sum_probs=121.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECC--C----CCCEEEEEECCCCHHHHHHHHHHCCCCEEC---CEE
Q ss_conf 7849999079988998899985303896249999656--9----976799993689988999999845994767---937
Q 003717 12 EQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIVRT--K----GRSFGYVDFFPSSHKSLSKLFSTYNGCVWK---GGR 82 (800)
Q Consensus 12 q~rtLFVGNLp~sVTEEdLrelFskFGeV~sVrVIRd--T----GRGFGFVeFaS~D~EDAeKAIeeLNG~eLd---GRk 82 (800)
..++|||+|||+.+++++|+++|++||.|.++.++++ + .+|||||+|.+ .++|.+|+..|||..+. ++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~--~~~A~~A~~~l~~~~~~~~~~~~ 79 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYT--RKAALEAQNALHNMKVLPGMHHP 79 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESS--HHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEEEEEEECC--HHHHHHHHHHHCCCEECCCCCCC
T ss_conf 8549999689997899999999985798789999854788988730699999788--99999999985595781688534
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCC--CCCCC
Q ss_conf 7997424013688765488886521799998988999987334799888888520000114676423660158--99972
Q 003717 83 LRLERAKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPFC--GTGKH 160 (800)
Q Consensus 83 LkVe~AkPk~l~R~krErkeakakk~~sp~sDsvd~q~pkl~is~~Lk~svsesd~LreyFskyGKVKsVp~k--gTGK~ 160 (800)
+.+.++.+.... ......+++. .|+..+++ ++|+.+|.+||.|..+... .+|++
T Consensus 80 ~~~~~~~~~~~~----------------------~~~~~~l~v~-nl~~~~t~-~~l~~~F~~~G~i~~v~~~~~~~g~~ 135 (175)
T 3nmr_A 80 IQMKPADSEKNN----------------------AVEDRKLFIG-MISKKCTE-NDIRVMFSSFGQIEECRILRGPDGLS 135 (175)
T ss_dssp CEEEECGGGCCS----------------------CGGGSEEEEE-SCCTTCCH-HHHHHHHGGGSCEEEEEEEECTTSCE
T ss_pred EEECCCCCCCCC----------------------CCCCCEEEEC-CCCCCCCH-HHHHHHHHHCCCEEEEEEEECCCCCE
T ss_conf 487314446433----------------------5788769991-79986899-99999997178879999888899988
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 1-1113336899996434410212354641468102689986321
Q 003717 161 K-YSFQRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHPAAGQEEI 204 (800)
Q Consensus 161 K-YGFg~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n~~q~~i 204 (800)
+ |+| |.|.+.+++..|+.+|||..+....+....|
T Consensus 136 ~g~af---------V~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 136 RGCAF---------VTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp EEEEE---------EEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred EEEEE---------EEECCHHHHHHHHHHHCCCCCCCCCCCCEEE
T ss_conf 88899---------9978889999999985577303889977399
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=1.00 E-value=1 Score=148.25 Aligned_cols=157 Identities=18% Similarity=0.294 Sum_probs=122.4
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEE---CCCCCCEEEEEECCCCHHHHHHHHHHCCCCEECCEEEEE
Q ss_conf 00578499990799889988999853038962499996---569976799993689988999999845994767937799
Q 003717 9 EVEEQTRIYVGGLGEKVTDDDLAKVFSSLGEVKAVDIV---RTKGRSFGYVDFFPSSHKSLSKLFSTYNGCVWKGGRLRL 85 (800)
Q Consensus 9 Ev~q~rtLFVGNLp~sVTEEdLrelFskFGeV~sVrVI---RdTGRGFGFVeFaS~D~EDAeKAIeeLNG~eLdGRkLkV 85 (800)
+....++|||+|||+.+++++|+++|..||.+..+.+. ....+|||||+|.+ .++|.+|+ .|||..+.|+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~--~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFES--AEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESS--HHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECC--HHHHHHHH-HCCCCEECCEEEEE
T ss_conf 8899747999689987798999999998577330799988889634189999789--99999998-64897867768998
Q ss_pred EECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCC-CCC
Q ss_conf 7424013688765488886521799998988999987334799888888520000114676423660158999721-111
Q 003717 86 ERAKEHYLARLKREWAEDDAQLVNPPVTDSVAPDNKDATRLDTPKKLLDKDKKLNIFFPRLRKVKTLPFCGTGKHK-YSF 164 (800)
Q Consensus 86 e~AkPk~l~R~krErkeakakk~~sp~sDsvd~q~pkl~is~~Lk~svsesd~LreyFskyGKVKsVp~kgTGK~K-YGF 164 (800)
.++.++.... ......+++. .|+..+++ ++|+.+|.+||.|..+ ..+|+++ |+|
T Consensus 86 ~~~~~~~~~~---------------------~~~~~~l~v~-nlp~~~t~-~~l~~~F~~~g~v~~~--~~~~~~~g~af 140 (175)
T 1fje_B 86 EKPKGRDSKK---------------------VRAARTLLAK-NLSFNITE-DELKEVFEDALEIRLV--SQDGKSKGIAY 140 (175)
T ss_dssp ECCCCSSCST---------------------TGGGGEEEEE-SCCSSCCH-HHHHHHCTTCSEEEEE--CSSSSCCSEEE
T ss_pred ECCCCCCCCC---------------------CCCCCEEEEE-CCCCCCCH-HHHHHHHHHCCEEEEE--CCCCCCCEEEE
T ss_conf 6377765445---------------------5657789996-99988999-9999999865769980--68998766899
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 33368999964344102123546414681026899863210
Q 003717 165 QRVEAPPLPKYFCDCEEHSAAFHAAEGKQIHHPAAGQEEIH 205 (800)
Q Consensus 165 g~ve~Ps~pV~F~sfEea~aA~eAmNG~~i~n~n~~q~~i~ 205 (800)
|.|.+.+++..|+..|||..+. +....|.
T Consensus 141 ---------V~f~~~~~A~~A~~~l~g~~~~---g~~i~v~ 169 (175)
T 1fje_B 141 ---------IEFKSEADAEKNLEEKQGAEID---GRSVSLY 169 (175)
T ss_dssp ---------EECSSHHHHHHHHHHHTEEEET---TEEEEEE
T ss_pred ---------EEECCHHHHHHHHHHHCCCEEC---CEEEEEE
T ss_conf ---------9977899999999984798888---8489999
Done!